metadata
configs:
- config_name: conch_v15_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/conch_v15/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/conch_v15/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/conch_v15/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/conch_v15/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/conch_v15/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/conch_v15/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/conch_v15/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/conch_v15/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/conch_v15/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/conch_v15/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/conch_v15/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/conch_v15/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/conch_v15/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/conch_v15/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/conch_v15/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/conch_v15/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/conch_v15/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/conch_v15/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/conch_v15/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/conch_v15/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/conch_v15/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/conch_v15/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/conch_v15/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/conch_v15/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/conch_v15/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/conch_v15/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/conch_v15/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/conch_v15/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/conch_v15/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/conch_v15/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/conch_v15/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/conch_v15/10x/*.parquet
TCGA Pathology Feature Atlas
This repository stores pathology foundation-model embeddings as sharded Parquet files.
Physical layout:
data/{project_id}/{model_name}/{magnification}/part-*.parquet
Example:
data/TCGA-BRCA/conch_v15/20x/part-00000.parquet
Example streaming load:
from datasets import load_dataset
ds = load_dataset("IUCompPath/CRAFT", name="conch_v15_20x", split="TCGA_BRCA", streaming=True)
Each row is a chunk of patch embeddings from one slide.