Datasets:

IUCompPath-User commited on
Commit
ab3bb20
·
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1 Parent(s): 0415e2f

Repair cumulative TRACE metadata after chief integration

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Publish cumulative metadata for models=['chief', 'conch_v1', 'ctranspath', 'gigapath_slide', 'titan', 'uni_v1', 'uni_v2']; repair job 8381184.

README.md CHANGED
@@ -994,12 +994,6 @@ configs:
994
 
995
  This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
996
 
997
- Physical layout:
998
-
999
- ```text
1000
- data/{project_id}/{model_name}/{magnification}/part-*.parquet
1001
- ```
1002
-
1003
  ## Included release scope
1004
 
1005
  - Models: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2
@@ -1010,12 +1004,4 @@ data/{project_id}/{model_name}/{magnification}/part-*.parquet
1010
  - H5 validation rows: 174,761
1011
  - H5 validation failures: 0
1012
 
1013
- Each row is a chunk of patch or slide embeddings from one TCGA slide.
1014
-
1015
- Example streaming load:
1016
-
1017
- ```python
1018
- from datasets import load_dataset
1019
-
1020
- ds = load_dataset("IUCompPath/TRACE", name="conch_v1_20x", split="TCGA_BRCA", streaming=True)
1021
- ```
 
994
 
995
  This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
996
 
 
 
 
 
 
 
997
  ## Included release scope
998
 
999
  - Models: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2
 
1004
  - H5 validation rows: 174,761
1005
  - H5 validation failures: 0
1006
 
1007
+ Physical layout: data/{project_id}/{model_name}/{magnification}/part-*.parquet
 
 
 
 
 
 
 
 
metadata/h5_validation.parquet CHANGED
@@ -1,3 +1,3 @@
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metadata/nested_index.json CHANGED
@@ -1,5 +1,10 @@
1
  {
2
  "TCGA-ACC": {
 
 
 
 
 
3
  "conch_v1": {
4
  "10x": [
5
  "data/TCGA-ACC/conch_v1/10x/part-00000.parquet"
@@ -125,6 +130,11 @@
125
  }
126
  },
127
  "TCGA-BLCA": {
 
 
 
 
 
128
  "conch_v1": {
129
  "10x": [
130
  "data/TCGA-BLCA/conch_v1/10x/part-00000.parquet",
@@ -319,6 +329,11 @@
319
  }
320
  },
321
  "TCGA-BRCA": {
 
 
 
 
 
322
  "conch_v1": {
323
  "10x": [
324
  "data/TCGA-BRCA/conch_v1/10x/part-00000.parquet",
@@ -651,6 +666,11 @@
651
  }
652
  },
653
  "TCGA-CESC": {
 
 
 
 
 
654
  "conch_v1": {
655
  "10x": [
656
  "data/TCGA-CESC/conch_v1/10x/part-00000.parquet"
@@ -754,6 +774,11 @@
754
  }
755
  },
756
  "TCGA-CHOL": {
 
 
 
 
 
757
  "conch_v1": {
758
  "10x": [
759
  "data/TCGA-CHOL/conch_v1/10x/part-00000.parquet"
@@ -819,6 +844,11 @@
819
  }
820
  },
821
  "TCGA-COAD": {
 
 
 
 
 
822
  "conch_v1": {
823
  "10x": [
824
  "data/TCGA-COAD/conch_v1/10x/part-00000.parquet"
@@ -945,6 +975,11 @@
945
  }
946
  },
947
  "TCGA-DLBC": {
 
 
 
 
 
948
  "conch_v1": {
949
  "10x": [
950
  "data/TCGA-DLBC/conch_v1/10x/part-00000.parquet"
@@ -1005,6 +1040,11 @@
1005
  }
1006
  },
1007
  "TCGA-ESCA": {
 
 
 
 
 
1008
  "conch_v1": {
1009
  "10x": [
1010
  "data/TCGA-ESCA/conch_v1/10x/part-00000.parquet"
@@ -1088,6 +1128,11 @@
1088
  }
1089
  },
1090
  "TCGA-GBM": {
 
 
 
 
 
1091
  "conch_v1": {
1092
  "10x": [
1093
  "data/TCGA-GBM/conch_v1/10x/part-00000.parquet",
@@ -1290,6 +1335,11 @@
1290
  }
1291
  },
1292
  "TCGA-HNSC": {
 
 
 
 
 
1293
  "conch_v1": {
1294
  "10x": [
1295
  "data/TCGA-HNSC/conch_v1/10x/part-00000.parquet"
@@ -1436,6 +1486,11 @@
1436
  }
1437
  },
1438
  "TCGA-KICH": {
 
 
 
 
 
1439
  "conch_v1": {
1440
  "10x": [
1441
  "data/TCGA-KICH/conch_v1/10x/part-00000.parquet"
@@ -1518,6 +1573,11 @@
1518
  }
1519
  },
1520
  "TCGA-KIRC": {
 
 
 
 
 
1521
  "conch_v1": {
1522
  "10x": [
1523
  "data/TCGA-KIRC/conch_v1/10x/part-00000.parquet",
@@ -1704,6 +1764,11 @@
1704
  }
1705
  },
1706
  "TCGA-KIRP": {
 
 
 
 
 
1707
  "conch_v1": {
1708
  "10x": [
1709
  "data/TCGA-KIRP/conch_v1/10x/part-00000.parquet"
@@ -1826,6 +1891,11 @@
1826
  }
1827
  },
1828
  "TCGA-LGG": {
 
 
 
 
 
1829
  "conch_v1": {
1830
  "10x": [
1831
  "data/TCGA-LGG/conch_v1/10x/part-00000.parquet",
@@ -2034,6 +2104,11 @@
2034
  }
2035
  },
2036
  "TCGA-LIHC": {
 
 
 
 
 
2037
  "conch_v1": {
2038
  "10x": [
2039
  "data/TCGA-LIHC/conch_v1/10x/part-00000.parquet"
@@ -2176,6 +2251,11 @@
2176
  }
2177
  },
2178
  "TCGA-LUAD": {
 
 
 
 
 
2179
  "conch_v1": {
2180
  "10x": [
2181
  "data/TCGA-LUAD/conch_v1/10x/part-00000.parquet"
@@ -2342,6 +2422,11 @@
2342
  }
2343
  },
2344
  "TCGA-LUSC": {
 
 
 
 
 
2345
  "conch_v1": {
2346
  "10x": [
2347
  "data/TCGA-LUSC/conch_v1/10x/part-00000.parquet"
@@ -2506,6 +2591,11 @@
2506
  }
2507
  },
2508
  "TCGA-MESO": {
 
 
 
 
 
2509
  "conch_v1": {
2510
  "10x": [
2511
  "data/TCGA-MESO/conch_v1/10x/part-00000.parquet"
@@ -2573,6 +2663,11 @@
2573
  }
2574
  },
2575
  "TCGA-OV": {
 
 
 
 
 
2576
  "conch_v1": {
2577
  "10x": [
2578
  "data/TCGA-OV/conch_v1/10x/part-00000.parquet"
@@ -2652,6 +2747,11 @@
2652
  }
2653
  },
2654
  "TCGA-PAAD": {
 
 
 
 
 
2655
  "conch_v1": {
2656
  "10x": [
2657
  "data/TCGA-PAAD/conch_v1/10x/part-00000.parquet"
@@ -2753,6 +2853,11 @@
2753
  }
2754
  },
2755
  "TCGA-PCPG": {
 
 
 
 
 
2756
  "conch_v1": {
2757
  "10x": [
2758
  "data/TCGA-PCPG/conch_v1/10x/part-00000.parquet"
@@ -2859,6 +2964,11 @@
2859
  }
2860
  },
2861
  "TCGA-PRAD": {
 
 
 
 
 
2862
  "conch_v1": {
2863
  "10x": [
2864
  "data/TCGA-PRAD/conch_v1/10x/part-00000.parquet"
@@ -3016,6 +3126,11 @@
3016
  }
3017
  },
3018
  "TCGA-READ": {
 
 
 
 
 
3019
  "conch_v1": {
3020
  "10x": [
3021
  "data/TCGA-READ/conch_v1/10x/part-00000.parquet"
@@ -3088,6 +3203,11 @@
3088
  }
3089
  },
3090
  "TCGA-SARC": {
 
 
 
 
 
3091
  "conch_v1": {
3092
  "10x": [
3093
  "data/TCGA-SARC/conch_v1/10x/part-00000.parquet",
@@ -3326,6 +3446,11 @@
3326
  }
3327
  },
3328
  "TCGA-SKCM": {
 
 
 
 
 
3329
  "conch_v1": {
3330
  "10x": [
3331
  "data/TCGA-SKCM/conch_v1/10x/part-00000.parquet"
@@ -3504,6 +3629,11 @@
3504
  }
3505
  },
3506
  "TCGA-STAD": {
 
 
 
 
 
3507
  "conch_v1": {
3508
  "10x": [
3509
  "data/TCGA-STAD/conch_v1/10x/part-00000.parquet"
@@ -3764,6 +3894,11 @@
3764
  }
3765
  },
3766
  "TCGA-THCA": {
 
 
 
 
 
3767
  "conch_v1": {
3768
  "10x": [
3769
  "data/TCGA-THCA/conch_v1/10x/part-00000.parquet"
@@ -3942,6 +4077,11 @@
3942
  }
3943
  },
3944
  "TCGA-THYM": {
 
 
 
 
 
3945
  "conch_v1": {
3946
  "10x": [
3947
  "data/TCGA-THYM/conch_v1/10x/part-00000.parquet"
@@ -4048,6 +4188,11 @@
4048
  }
4049
  },
4050
  "TCGA-UCEC": {
 
 
 
 
 
4051
  "conch_v1": {
4052
  "10x": [
4053
  "data/TCGA-UCEC/conch_v1/10x/part-00000.parquet",
@@ -4268,6 +4413,11 @@
4268
  }
4269
  },
4270
  "TCGA-UCS": {
 
 
 
 
 
4271
  "conch_v1": {
4272
  "10x": [
4273
  "data/TCGA-UCS/conch_v1/10x/part-00000.parquet"
@@ -4347,6 +4497,11 @@
4347
  }
4348
  },
4349
  "TCGA-UVM": {
 
 
 
 
 
4350
  "conch_v1": {
4351
  "10x": [
4352
  "data/TCGA-UVM/conch_v1/10x/part-00000.parquet"
 
1
  {
2
  "TCGA-ACC": {
3
+ "chief": {
4
+ "10x": [
5
+ "data/TCGA-ACC/chief/10x/part-00000.parquet"
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+ ]
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+ },
8
  "conch_v1": {
9
  "10x": [
10
  "data/TCGA-ACC/conch_v1/10x/part-00000.parquet"
 
130
  }
131
  },
132
  "TCGA-BLCA": {
133
+ "chief": {
134
+ "10x": [
135
+ "data/TCGA-BLCA/chief/10x/part-00000.parquet"
136
+ ]
137
+ },
138
  "conch_v1": {
139
  "10x": [
140
  "data/TCGA-BLCA/conch_v1/10x/part-00000.parquet",
 
329
  }
330
  },
331
  "TCGA-BRCA": {
332
+ "chief": {
333
+ "10x": [
334
+ "data/TCGA-BRCA/chief/10x/part-00000.parquet"
335
+ ]
336
+ },
337
  "conch_v1": {
338
  "10x": [
339
  "data/TCGA-BRCA/conch_v1/10x/part-00000.parquet",
 
666
  }
667
  },
668
  "TCGA-CESC": {
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+ "10x": [
671
+ "data/TCGA-CESC/chief/10x/part-00000.parquet"
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+ ]
673
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674
  "conch_v1": {
675
  "10x": [
676
  "data/TCGA-CESC/conch_v1/10x/part-00000.parquet"
 
774
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775
  },
776
  "TCGA-CHOL": {
777
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778
+ "10x": [
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780
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781
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782
  "conch_v1": {
783
  "10x": [
784
  "data/TCGA-CHOL/conch_v1/10x/part-00000.parquet"
 
844
  }
845
  },
846
  "TCGA-COAD": {
847
+ "chief": {
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+ "10x": [
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850
+ ]
851
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852
  "conch_v1": {
853
  "10x": [
854
  "data/TCGA-COAD/conch_v1/10x/part-00000.parquet"
 
975
  }
976
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  "TCGA-DLBC": {
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983
  "conch_v1": {
984
  "10x": [
985
  "data/TCGA-DLBC/conch_v1/10x/part-00000.parquet"
 
1040
  }
1041
  },
1042
  "TCGA-ESCA": {
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1044
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1046
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1048
  "conch_v1": {
1049
  "10x": [
1050
  "data/TCGA-ESCA/conch_v1/10x/part-00000.parquet"
 
1128
  }
1129
  },
1130
  "TCGA-GBM": {
1131
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1132
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1133
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1134
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1135
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1136
  "conch_v1": {
1137
  "10x": [
1138
  "data/TCGA-GBM/conch_v1/10x/part-00000.parquet",
 
1335
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1336
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  "TCGA-HNSC": {
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  "conch_v1": {
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  "10x": [
1345
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1486
  }
1487
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1488
  "TCGA-KICH": {
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1490
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1492
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1494
  "conch_v1": {
1495
  "10x": [
1496
  "data/TCGA-KICH/conch_v1/10x/part-00000.parquet"
 
1573
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1574
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1575
  "TCGA-KIRC": {
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1577
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1579
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1580
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1581
  "conch_v1": {
1582
  "10x": [
1583
  "data/TCGA-KIRC/conch_v1/10x/part-00000.parquet",
 
1764
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1765
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1766
  "TCGA-KIRP": {
1767
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1768
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1769
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1770
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1771
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1772
  "conch_v1": {
1773
  "10x": [
1774
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1891
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1892
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1893
  "TCGA-LGG": {
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1895
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1897
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1898
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1899
  "conch_v1": {
1900
  "10x": [
1901
  "data/TCGA-LGG/conch_v1/10x/part-00000.parquet",
 
2104
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2105
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2106
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2107
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2108
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2109
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2110
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2111
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2112
  "conch_v1": {
2113
  "10x": [
2114
  "data/TCGA-LIHC/conch_v1/10x/part-00000.parquet"
 
2251
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2252
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2253
  "TCGA-LUAD": {
2254
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2255
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2256
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2257
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2258
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2259
  "conch_v1": {
2260
  "10x": [
2261
  "data/TCGA-LUAD/conch_v1/10x/part-00000.parquet"
 
2422
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2423
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2424
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2426
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2427
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2428
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2430
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2432
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2591
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2592
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2593
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2597
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2598
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2599
  "conch_v1": {
2600
  "10x": [
2601
  "data/TCGA-MESO/conch_v1/10x/part-00000.parquet"
 
2663
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2664
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2665
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2666
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2667
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2669
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2670
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2671
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2672
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2673
  "data/TCGA-OV/conch_v1/10x/part-00000.parquet"
 
2747
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2748
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2751
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2853
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2859
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2861
  "conch_v1": {
2862
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2964
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2965
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2966
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2967
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2968
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2970
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2972
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2973
  "10x": [
2974
  "data/TCGA-PRAD/conch_v1/10x/part-00000.parquet"
 
3126
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3127
  },
3128
  "TCGA-READ": {
3129
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3130
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3131
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3132
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3133
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3134
  "conch_v1": {
3135
  "10x": [
3136
  "data/TCGA-READ/conch_v1/10x/part-00000.parquet"
 
3203
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3204
  },
3205
  "TCGA-SARC": {
3206
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3207
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3208
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3209
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3210
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3211
  "conch_v1": {
3212
  "10x": [
3213
  "data/TCGA-SARC/conch_v1/10x/part-00000.parquet",
 
3446
  }
3447
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3448
  "TCGA-SKCM": {
3449
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3450
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3451
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3452
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3454
  "conch_v1": {
3455
  "10x": [
3456
  "data/TCGA-SKCM/conch_v1/10x/part-00000.parquet"
 
3629
  }
3630
  },
3631
  "TCGA-STAD": {
3632
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3633
+ "10x": [
3634
+ "data/TCGA-STAD/chief/10x/part-00000.parquet"
3635
+ ]
3636
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3637
  "conch_v1": {
3638
  "10x": [
3639
  "data/TCGA-STAD/conch_v1/10x/part-00000.parquet"
 
3894
  }
3895
  },
3896
  "TCGA-THCA": {
3897
+ "chief": {
3898
+ "10x": [
3899
+ "data/TCGA-THCA/chief/10x/part-00000.parquet"
3900
+ ]
3901
+ },
3902
  "conch_v1": {
3903
  "10x": [
3904
  "data/TCGA-THCA/conch_v1/10x/part-00000.parquet"
 
4077
  }
4078
  },
4079
  "TCGA-THYM": {
4080
+ "chief": {
4081
+ "10x": [
4082
+ "data/TCGA-THYM/chief/10x/part-00000.parquet"
4083
+ ]
4084
+ },
4085
  "conch_v1": {
4086
  "10x": [
4087
  "data/TCGA-THYM/conch_v1/10x/part-00000.parquet"
 
4188
  }
4189
  },
4190
  "TCGA-UCEC": {
4191
+ "chief": {
4192
+ "10x": [
4193
+ "data/TCGA-UCEC/chief/10x/part-00000.parquet"
4194
+ ]
4195
+ },
4196
  "conch_v1": {
4197
  "10x": [
4198
  "data/TCGA-UCEC/conch_v1/10x/part-00000.parquet",
 
4413
  }
4414
  },
4415
  "TCGA-UCS": {
4416
+ "chief": {
4417
+ "10x": [
4418
+ "data/TCGA-UCS/chief/10x/part-00000.parquet"
4419
+ ]
4420
+ },
4421
  "conch_v1": {
4422
  "10x": [
4423
  "data/TCGA-UCS/conch_v1/10x/part-00000.parquet"
 
4497
  }
4498
  },
4499
  "TCGA-UVM": {
4500
+ "chief": {
4501
+ "10x": [
4502
+ "data/TCGA-UVM/chief/10x/part-00000.parquet"
4503
+ ]
4504
+ },
4505
  "conch_v1": {
4506
  "10x": [
4507
  "data/TCGA-UVM/conch_v1/10x/part-00000.parquet"
metadata/release.json CHANGED
@@ -1,9 +1,10 @@
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
- "created_utc": "2026-09-30T03:27:44.003883+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
 
7
  "TCGA-ACC/conch_v1/10x",
8
  "TCGA-ACC/conch_v1/20x",
9
  "TCGA-ACC/conch_v1/5x",
@@ -18,6 +19,7 @@
18
  "TCGA-ACC/uni_v2/10x",
19
  "TCGA-ACC/uni_v2/20x",
20
  "TCGA-ACC/uni_v2/5x",
 
21
  "TCGA-BLCA/conch_v1/10x",
22
  "TCGA-BLCA/conch_v1/20x",
23
  "TCGA-BLCA/conch_v1/5x",
@@ -32,6 +34,7 @@
32
  "TCGA-BLCA/uni_v2/10x",
33
  "TCGA-BLCA/uni_v2/20x",
34
  "TCGA-BLCA/uni_v2/5x",
 
35
  "TCGA-BRCA/conch_v1/10x",
36
  "TCGA-BRCA/conch_v1/20x",
37
  "TCGA-BRCA/conch_v1/5x",
@@ -46,6 +49,7 @@
46
  "TCGA-BRCA/uni_v2/10x",
47
  "TCGA-BRCA/uni_v2/20x",
48
  "TCGA-BRCA/uni_v2/5x",
 
49
  "TCGA-CESC/conch_v1/10x",
50
  "TCGA-CESC/conch_v1/20x",
51
  "TCGA-CESC/conch_v1/5x",
@@ -60,6 +64,7 @@
60
  "TCGA-CESC/uni_v2/10x",
61
  "TCGA-CESC/uni_v2/20x",
62
  "TCGA-CESC/uni_v2/5x",
 
63
  "TCGA-CHOL/conch_v1/10x",
64
  "TCGA-CHOL/conch_v1/20x",
65
  "TCGA-CHOL/conch_v1/5x",
@@ -74,6 +79,7 @@
74
  "TCGA-CHOL/uni_v2/10x",
75
  "TCGA-CHOL/uni_v2/20x",
76
  "TCGA-CHOL/uni_v2/5x",
 
77
  "TCGA-COAD/conch_v1/10x",
78
  "TCGA-COAD/conch_v1/20x",
79
  "TCGA-COAD/conch_v1/5x",
@@ -88,6 +94,7 @@
88
  "TCGA-COAD/uni_v2/10x",
89
  "TCGA-COAD/uni_v2/20x",
90
  "TCGA-COAD/uni_v2/5x",
 
91
  "TCGA-DLBC/conch_v1/10x",
92
  "TCGA-DLBC/conch_v1/20x",
93
  "TCGA-DLBC/conch_v1/5x",
@@ -102,6 +109,7 @@
102
  "TCGA-DLBC/uni_v2/10x",
103
  "TCGA-DLBC/uni_v2/20x",
104
  "TCGA-DLBC/uni_v2/5x",
 
105
  "TCGA-ESCA/conch_v1/10x",
106
  "TCGA-ESCA/conch_v1/20x",
107
  "TCGA-ESCA/conch_v1/5x",
@@ -116,6 +124,7 @@
116
  "TCGA-ESCA/uni_v2/10x",
117
  "TCGA-ESCA/uni_v2/20x",
118
  "TCGA-ESCA/uni_v2/5x",
 
119
  "TCGA-GBM/conch_v1/10x",
120
  "TCGA-GBM/conch_v1/20x",
121
  "TCGA-GBM/conch_v1/5x",
@@ -130,6 +139,7 @@
130
  "TCGA-GBM/uni_v2/10x",
131
  "TCGA-GBM/uni_v2/20x",
132
  "TCGA-GBM/uni_v2/5x",
 
133
  "TCGA-HNSC/conch_v1/10x",
134
  "TCGA-HNSC/conch_v1/20x",
135
  "TCGA-HNSC/conch_v1/5x",
@@ -144,6 +154,7 @@
144
  "TCGA-HNSC/uni_v2/10x",
145
  "TCGA-HNSC/uni_v2/20x",
146
  "TCGA-HNSC/uni_v2/5x",
 
147
  "TCGA-KICH/conch_v1/10x",
148
  "TCGA-KICH/conch_v1/20x",
149
  "TCGA-KICH/conch_v1/5x",
@@ -158,6 +169,7 @@
158
  "TCGA-KICH/uni_v2/10x",
159
  "TCGA-KICH/uni_v2/20x",
160
  "TCGA-KICH/uni_v2/5x",
 
161
  "TCGA-KIRC/conch_v1/10x",
162
  "TCGA-KIRC/conch_v1/20x",
163
  "TCGA-KIRC/conch_v1/5x",
@@ -172,6 +184,7 @@
172
  "TCGA-KIRC/uni_v2/10x",
173
  "TCGA-KIRC/uni_v2/20x",
174
  "TCGA-KIRC/uni_v2/5x",
 
175
  "TCGA-KIRP/conch_v1/10x",
176
  "TCGA-KIRP/conch_v1/20x",
177
  "TCGA-KIRP/conch_v1/5x",
@@ -186,6 +199,7 @@
186
  "TCGA-KIRP/uni_v2/10x",
187
  "TCGA-KIRP/uni_v2/20x",
188
  "TCGA-KIRP/uni_v2/5x",
 
189
  "TCGA-LGG/conch_v1/10x",
190
  "TCGA-LGG/conch_v1/20x",
191
  "TCGA-LGG/conch_v1/5x",
@@ -200,6 +214,7 @@
200
  "TCGA-LGG/uni_v2/10x",
201
  "TCGA-LGG/uni_v2/20x",
202
  "TCGA-LGG/uni_v2/5x",
 
203
  "TCGA-LIHC/conch_v1/10x",
204
  "TCGA-LIHC/conch_v1/20x",
205
  "TCGA-LIHC/conch_v1/5x",
@@ -214,6 +229,7 @@
214
  "TCGA-LIHC/uni_v2/10x",
215
  "TCGA-LIHC/uni_v2/20x",
216
  "TCGA-LIHC/uni_v2/5x",
 
217
  "TCGA-LUAD/conch_v1/10x",
218
  "TCGA-LUAD/conch_v1/20x",
219
  "TCGA-LUAD/conch_v1/5x",
@@ -228,6 +244,7 @@
228
  "TCGA-LUAD/uni_v2/10x",
229
  "TCGA-LUAD/uni_v2/20x",
230
  "TCGA-LUAD/uni_v2/5x",
 
231
  "TCGA-LUSC/conch_v1/10x",
232
  "TCGA-LUSC/conch_v1/20x",
233
  "TCGA-LUSC/conch_v1/5x",
@@ -242,6 +259,7 @@
242
  "TCGA-LUSC/uni_v2/10x",
243
  "TCGA-LUSC/uni_v2/20x",
244
  "TCGA-LUSC/uni_v2/5x",
 
245
  "TCGA-MESO/conch_v1/10x",
246
  "TCGA-MESO/conch_v1/20x",
247
  "TCGA-MESO/conch_v1/5x",
@@ -256,6 +274,7 @@
256
  "TCGA-MESO/uni_v2/10x",
257
  "TCGA-MESO/uni_v2/20x",
258
  "TCGA-MESO/uni_v2/5x",
 
259
  "TCGA-OV/conch_v1/10x",
260
  "TCGA-OV/conch_v1/20x",
261
  "TCGA-OV/conch_v1/5x",
@@ -270,6 +289,7 @@
270
  "TCGA-OV/uni_v2/10x",
271
  "TCGA-OV/uni_v2/20x",
272
  "TCGA-OV/uni_v2/5x",
 
273
  "TCGA-PAAD/conch_v1/10x",
274
  "TCGA-PAAD/conch_v1/20x",
275
  "TCGA-PAAD/conch_v1/5x",
@@ -284,6 +304,7 @@
284
  "TCGA-PAAD/uni_v2/10x",
285
  "TCGA-PAAD/uni_v2/20x",
286
  "TCGA-PAAD/uni_v2/5x",
 
287
  "TCGA-PCPG/conch_v1/10x",
288
  "TCGA-PCPG/conch_v1/20x",
289
  "TCGA-PCPG/conch_v1/5x",
@@ -298,6 +319,7 @@
298
  "TCGA-PCPG/uni_v2/10x",
299
  "TCGA-PCPG/uni_v2/20x",
300
  "TCGA-PCPG/uni_v2/5x",
 
301
  "TCGA-PRAD/conch_v1/10x",
302
  "TCGA-PRAD/conch_v1/20x",
303
  "TCGA-PRAD/conch_v1/5x",
@@ -312,6 +334,7 @@
312
  "TCGA-PRAD/uni_v2/10x",
313
  "TCGA-PRAD/uni_v2/20x",
314
  "TCGA-PRAD/uni_v2/5x",
 
315
  "TCGA-READ/conch_v1/10x",
316
  "TCGA-READ/conch_v1/20x",
317
  "TCGA-READ/conch_v1/5x",
@@ -326,6 +349,7 @@
326
  "TCGA-READ/uni_v2/10x",
327
  "TCGA-READ/uni_v2/20x",
328
  "TCGA-READ/uni_v2/5x",
 
329
  "TCGA-SARC/conch_v1/10x",
330
  "TCGA-SARC/conch_v1/20x",
331
  "TCGA-SARC/conch_v1/5x",
@@ -340,6 +364,7 @@
340
  "TCGA-SARC/uni_v2/10x",
341
  "TCGA-SARC/uni_v2/20x",
342
  "TCGA-SARC/uni_v2/5x",
 
343
  "TCGA-SKCM/conch_v1/10x",
344
  "TCGA-SKCM/conch_v1/20x",
345
  "TCGA-SKCM/conch_v1/5x",
@@ -354,6 +379,7 @@
354
  "TCGA-SKCM/uni_v2/10x",
355
  "TCGA-SKCM/uni_v2/20x",
356
  "TCGA-SKCM/uni_v2/5x",
 
357
  "TCGA-STAD/conch_v1/10x",
358
  "TCGA-STAD/conch_v1/20x",
359
  "TCGA-STAD/conch_v1/5x",
@@ -382,6 +408,7 @@
382
  "TCGA-TGCT/uni_v2/10x",
383
  "TCGA-TGCT/uni_v2/20x",
384
  "TCGA-TGCT/uni_v2/5x",
 
385
  "TCGA-THCA/conch_v1/10x",
386
  "TCGA-THCA/conch_v1/20x",
387
  "TCGA-THCA/conch_v1/5x",
@@ -396,6 +423,7 @@
396
  "TCGA-THCA/uni_v2/10x",
397
  "TCGA-THCA/uni_v2/20x",
398
  "TCGA-THCA/uni_v2/5x",
 
399
  "TCGA-THYM/conch_v1/10x",
400
  "TCGA-THYM/conch_v1/20x",
401
  "TCGA-THYM/conch_v1/5x",
@@ -410,6 +438,7 @@
410
  "TCGA-THYM/uni_v2/10x",
411
  "TCGA-THYM/uni_v2/20x",
412
  "TCGA-THYM/uni_v2/5x",
 
413
  "TCGA-UCEC/conch_v1/10x",
414
  "TCGA-UCEC/conch_v1/20x",
415
  "TCGA-UCEC/conch_v1/5x",
@@ -424,6 +453,7 @@
424
  "TCGA-UCEC/uni_v2/10x",
425
  "TCGA-UCEC/uni_v2/20x",
426
  "TCGA-UCEC/uni_v2/5x",
 
427
  "TCGA-UCS/conch_v1/10x",
428
  "TCGA-UCS/conch_v1/20x",
429
  "TCGA-UCS/conch_v1/5x",
@@ -438,6 +468,7 @@
438
  "TCGA-UCS/uni_v2/10x",
439
  "TCGA-UCS/uni_v2/20x",
440
  "TCGA-UCS/uni_v2/5x",
 
441
  "TCGA-UVM/conch_v1/10x",
442
  "TCGA-UVM/conch_v1/20x",
443
  "TCGA-UVM/conch_v1/5x",
@@ -453,7 +484,7 @@
453
  "TCGA-UVM/uni_v2/20x",
454
  "TCGA-UVM/uni_v2/5x"
455
  ],
456
- "commit_message": "Upload TCGA partial batch: gigapath_slide, titan, conch_v1, uni_v1, uni_v2, ctranspath",
457
  "builder_run_id": null,
458
  "source_hashes": {
459
  "location": "metadata/h5_validation.parquet",
 
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
+ "created_utc": "2026-09-30T18:32:55.899269+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
7
+ "TCGA-ACC/chief/10x",
8
  "TCGA-ACC/conch_v1/10x",
9
  "TCGA-ACC/conch_v1/20x",
10
  "TCGA-ACC/conch_v1/5x",
 
19
  "TCGA-ACC/uni_v2/10x",
20
  "TCGA-ACC/uni_v2/20x",
21
  "TCGA-ACC/uni_v2/5x",
22
+ "TCGA-BLCA/chief/10x",
23
  "TCGA-BLCA/conch_v1/10x",
24
  "TCGA-BLCA/conch_v1/20x",
25
  "TCGA-BLCA/conch_v1/5x",
 
34
  "TCGA-BLCA/uni_v2/10x",
35
  "TCGA-BLCA/uni_v2/20x",
36
  "TCGA-BLCA/uni_v2/5x",
37
+ "TCGA-BRCA/chief/10x",
38
  "TCGA-BRCA/conch_v1/10x",
39
  "TCGA-BRCA/conch_v1/20x",
40
  "TCGA-BRCA/conch_v1/5x",
 
49
  "TCGA-BRCA/uni_v2/10x",
50
  "TCGA-BRCA/uni_v2/20x",
51
  "TCGA-BRCA/uni_v2/5x",
52
+ "TCGA-CESC/chief/10x",
53
  "TCGA-CESC/conch_v1/10x",
54
  "TCGA-CESC/conch_v1/20x",
55
  "TCGA-CESC/conch_v1/5x",
 
64
  "TCGA-CESC/uni_v2/10x",
65
  "TCGA-CESC/uni_v2/20x",
66
  "TCGA-CESC/uni_v2/5x",
67
+ "TCGA-CHOL/chief/10x",
68
  "TCGA-CHOL/conch_v1/10x",
69
  "TCGA-CHOL/conch_v1/20x",
70
  "TCGA-CHOL/conch_v1/5x",
 
79
  "TCGA-CHOL/uni_v2/10x",
80
  "TCGA-CHOL/uni_v2/20x",
81
  "TCGA-CHOL/uni_v2/5x",
82
+ "TCGA-COAD/chief/10x",
83
  "TCGA-COAD/conch_v1/10x",
84
  "TCGA-COAD/conch_v1/20x",
85
  "TCGA-COAD/conch_v1/5x",
 
94
  "TCGA-COAD/uni_v2/10x",
95
  "TCGA-COAD/uni_v2/20x",
96
  "TCGA-COAD/uni_v2/5x",
97
+ "TCGA-DLBC/chief/10x",
98
  "TCGA-DLBC/conch_v1/10x",
99
  "TCGA-DLBC/conch_v1/20x",
100
  "TCGA-DLBC/conch_v1/5x",
 
109
  "TCGA-DLBC/uni_v2/10x",
110
  "TCGA-DLBC/uni_v2/20x",
111
  "TCGA-DLBC/uni_v2/5x",
112
+ "TCGA-ESCA/chief/10x",
113
  "TCGA-ESCA/conch_v1/10x",
114
  "TCGA-ESCA/conch_v1/20x",
115
  "TCGA-ESCA/conch_v1/5x",
 
124
  "TCGA-ESCA/uni_v2/10x",
125
  "TCGA-ESCA/uni_v2/20x",
126
  "TCGA-ESCA/uni_v2/5x",
127
+ "TCGA-GBM/chief/10x",
128
  "TCGA-GBM/conch_v1/10x",
129
  "TCGA-GBM/conch_v1/20x",
130
  "TCGA-GBM/conch_v1/5x",
 
139
  "TCGA-GBM/uni_v2/10x",
140
  "TCGA-GBM/uni_v2/20x",
141
  "TCGA-GBM/uni_v2/5x",
142
+ "TCGA-HNSC/chief/10x",
143
  "TCGA-HNSC/conch_v1/10x",
144
  "TCGA-HNSC/conch_v1/20x",
145
  "TCGA-HNSC/conch_v1/5x",
 
154
  "TCGA-HNSC/uni_v2/10x",
155
  "TCGA-HNSC/uni_v2/20x",
156
  "TCGA-HNSC/uni_v2/5x",
157
+ "TCGA-KICH/chief/10x",
158
  "TCGA-KICH/conch_v1/10x",
159
  "TCGA-KICH/conch_v1/20x",
160
  "TCGA-KICH/conch_v1/5x",
 
169
  "TCGA-KICH/uni_v2/10x",
170
  "TCGA-KICH/uni_v2/20x",
171
  "TCGA-KICH/uni_v2/5x",
172
+ "TCGA-KIRC/chief/10x",
173
  "TCGA-KIRC/conch_v1/10x",
174
  "TCGA-KIRC/conch_v1/20x",
175
  "TCGA-KIRC/conch_v1/5x",
 
184
  "TCGA-KIRC/uni_v2/10x",
185
  "TCGA-KIRC/uni_v2/20x",
186
  "TCGA-KIRC/uni_v2/5x",
187
+ "TCGA-KIRP/chief/10x",
188
  "TCGA-KIRP/conch_v1/10x",
189
  "TCGA-KIRP/conch_v1/20x",
190
  "TCGA-KIRP/conch_v1/5x",
 
199
  "TCGA-KIRP/uni_v2/10x",
200
  "TCGA-KIRP/uni_v2/20x",
201
  "TCGA-KIRP/uni_v2/5x",
202
+ "TCGA-LGG/chief/10x",
203
  "TCGA-LGG/conch_v1/10x",
204
  "TCGA-LGG/conch_v1/20x",
205
  "TCGA-LGG/conch_v1/5x",
 
214
  "TCGA-LGG/uni_v2/10x",
215
  "TCGA-LGG/uni_v2/20x",
216
  "TCGA-LGG/uni_v2/5x",
217
+ "TCGA-LIHC/chief/10x",
218
  "TCGA-LIHC/conch_v1/10x",
219
  "TCGA-LIHC/conch_v1/20x",
220
  "TCGA-LIHC/conch_v1/5x",
 
229
  "TCGA-LIHC/uni_v2/10x",
230
  "TCGA-LIHC/uni_v2/20x",
231
  "TCGA-LIHC/uni_v2/5x",
232
+ "TCGA-LUAD/chief/10x",
233
  "TCGA-LUAD/conch_v1/10x",
234
  "TCGA-LUAD/conch_v1/20x",
235
  "TCGA-LUAD/conch_v1/5x",
 
244
  "TCGA-LUAD/uni_v2/10x",
245
  "TCGA-LUAD/uni_v2/20x",
246
  "TCGA-LUAD/uni_v2/5x",
247
+ "TCGA-LUSC/chief/10x",
248
  "TCGA-LUSC/conch_v1/10x",
249
  "TCGA-LUSC/conch_v1/20x",
250
  "TCGA-LUSC/conch_v1/5x",
 
259
  "TCGA-LUSC/uni_v2/10x",
260
  "TCGA-LUSC/uni_v2/20x",
261
  "TCGA-LUSC/uni_v2/5x",
262
+ "TCGA-MESO/chief/10x",
263
  "TCGA-MESO/conch_v1/10x",
264
  "TCGA-MESO/conch_v1/20x",
265
  "TCGA-MESO/conch_v1/5x",
 
274
  "TCGA-MESO/uni_v2/10x",
275
  "TCGA-MESO/uni_v2/20x",
276
  "TCGA-MESO/uni_v2/5x",
277
+ "TCGA-OV/chief/10x",
278
  "TCGA-OV/conch_v1/10x",
279
  "TCGA-OV/conch_v1/20x",
280
  "TCGA-OV/conch_v1/5x",
 
289
  "TCGA-OV/uni_v2/10x",
290
  "TCGA-OV/uni_v2/20x",
291
  "TCGA-OV/uni_v2/5x",
292
+ "TCGA-PAAD/chief/10x",
293
  "TCGA-PAAD/conch_v1/10x",
294
  "TCGA-PAAD/conch_v1/20x",
295
  "TCGA-PAAD/conch_v1/5x",
 
304
  "TCGA-PAAD/uni_v2/10x",
305
  "TCGA-PAAD/uni_v2/20x",
306
  "TCGA-PAAD/uni_v2/5x",
307
+ "TCGA-PCPG/chief/10x",
308
  "TCGA-PCPG/conch_v1/10x",
309
  "TCGA-PCPG/conch_v1/20x",
310
  "TCGA-PCPG/conch_v1/5x",
 
319
  "TCGA-PCPG/uni_v2/10x",
320
  "TCGA-PCPG/uni_v2/20x",
321
  "TCGA-PCPG/uni_v2/5x",
322
+ "TCGA-PRAD/chief/10x",
323
  "TCGA-PRAD/conch_v1/10x",
324
  "TCGA-PRAD/conch_v1/20x",
325
  "TCGA-PRAD/conch_v1/5x",
 
334
  "TCGA-PRAD/uni_v2/10x",
335
  "TCGA-PRAD/uni_v2/20x",
336
  "TCGA-PRAD/uni_v2/5x",
337
+ "TCGA-READ/chief/10x",
338
  "TCGA-READ/conch_v1/10x",
339
  "TCGA-READ/conch_v1/20x",
340
  "TCGA-READ/conch_v1/5x",
 
349
  "TCGA-READ/uni_v2/10x",
350
  "TCGA-READ/uni_v2/20x",
351
  "TCGA-READ/uni_v2/5x",
352
+ "TCGA-SARC/chief/10x",
353
  "TCGA-SARC/conch_v1/10x",
354
  "TCGA-SARC/conch_v1/20x",
355
  "TCGA-SARC/conch_v1/5x",
 
364
  "TCGA-SARC/uni_v2/10x",
365
  "TCGA-SARC/uni_v2/20x",
366
  "TCGA-SARC/uni_v2/5x",
367
+ "TCGA-SKCM/chief/10x",
368
  "TCGA-SKCM/conch_v1/10x",
369
  "TCGA-SKCM/conch_v1/20x",
370
  "TCGA-SKCM/conch_v1/5x",
 
379
  "TCGA-SKCM/uni_v2/10x",
380
  "TCGA-SKCM/uni_v2/20x",
381
  "TCGA-SKCM/uni_v2/5x",
382
+ "TCGA-STAD/chief/10x",
383
  "TCGA-STAD/conch_v1/10x",
384
  "TCGA-STAD/conch_v1/20x",
385
  "TCGA-STAD/conch_v1/5x",
 
408
  "TCGA-TGCT/uni_v2/10x",
409
  "TCGA-TGCT/uni_v2/20x",
410
  "TCGA-TGCT/uni_v2/5x",
411
+ "TCGA-THCA/chief/10x",
412
  "TCGA-THCA/conch_v1/10x",
413
  "TCGA-THCA/conch_v1/20x",
414
  "TCGA-THCA/conch_v1/5x",
 
423
  "TCGA-THCA/uni_v2/10x",
424
  "TCGA-THCA/uni_v2/20x",
425
  "TCGA-THCA/uni_v2/5x",
426
+ "TCGA-THYM/chief/10x",
427
  "TCGA-THYM/conch_v1/10x",
428
  "TCGA-THYM/conch_v1/20x",
429
  "TCGA-THYM/conch_v1/5x",
 
438
  "TCGA-THYM/uni_v2/10x",
439
  "TCGA-THYM/uni_v2/20x",
440
  "TCGA-THYM/uni_v2/5x",
441
+ "TCGA-UCEC/chief/10x",
442
  "TCGA-UCEC/conch_v1/10x",
443
  "TCGA-UCEC/conch_v1/20x",
444
  "TCGA-UCEC/conch_v1/5x",
 
453
  "TCGA-UCEC/uni_v2/10x",
454
  "TCGA-UCEC/uni_v2/20x",
455
  "TCGA-UCEC/uni_v2/5x",
456
+ "TCGA-UCS/chief/10x",
457
  "TCGA-UCS/conch_v1/10x",
458
  "TCGA-UCS/conch_v1/20x",
459
  "TCGA-UCS/conch_v1/5x",
 
468
  "TCGA-UCS/uni_v2/10x",
469
  "TCGA-UCS/uni_v2/20x",
470
  "TCGA-UCS/uni_v2/5x",
471
+ "TCGA-UVM/chief/10x",
472
  "TCGA-UVM/conch_v1/10x",
473
  "TCGA-UVM/conch_v1/20x",
474
  "TCGA-UVM/conch_v1/5x",
 
484
  "TCGA-UVM/uni_v2/20x",
485
  "TCGA-UVM/uni_v2/5x"
486
  ],
487
+ "commit_message": "Upload TCGA partial batch: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2",
488
  "builder_run_id": null,
489
  "source_hashes": {
490
  "location": "metadata/h5_validation.parquet",
metadata/shard_manifest.parquet CHANGED
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- size 75701
 
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+ oid sha256:c82ace46c696156e8ee7aa9e33a6b28a734d7865a322879cb1586bd8d689e680
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+ size 76367
metadata/slide_registry.parquet CHANGED
@@ -1,3 +1,3 @@
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- size 11297951
 
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+ oid sha256:1617d3935c32a40e925ce7ad8b47bc674f6f11a85c0c50028f30d5d214f69d98
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+ size 11910010