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1.48M
NickMonzillo/SmartCloud
SmartCloud/__init__.py
Cloud.directory_cloud
python
def directory_cloud(self,directory,max_text_size=72,min_text_size=12,expand_width=50,expand_height=50,max_count=100000): '''Creates a word cloud using files from a directory. The color of the words correspond to the amount of documents the word occurs in.''' worddict = assign_fonts(tuplecount(re...
Creates a word cloud using files from a directory. The color of the words correspond to the amount of documents the word occurs in.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/__init__.py#L60-L85
[ "def tuplecount(text):\n '''Changes a dictionary into a list of tuples.'''\n worddict = wordcount(text)\n countlist = []\n for key in worddict.keys():\n countlist.append((key,worddict[key]))\n countlist = list(reversed(sorted(countlist,key = lambda x: x[1])))\n return countlist\n", "def d...
class Cloud(object): def __init__(self,width=500,height=500): pygame.init() pygame.font.init() self.width = width self.height = height self.cloud = pygame.Surface((width,height)) self.used_pos = [] def render_word(self,word,size,color): '''Creates a surfa...
NickMonzillo/SmartCloud
SmartCloud/__init__.py
Cloud.text_cloud
python
def text_cloud(self,text,max_text_size=72,min_text_size=12,expand_width=50,expand_height=50,max_count=100000): '''Creates a word cloud using plain text.''' worddict = assign_fonts(tuplecount(text),max_text_size,min_text_size,self.exclude_words) sorted_worddict = list(reversed(sorted(worddict.key...
Creates a word cloud using plain text.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/__init__.py#L87-L107
[ "def tuplecount(text):\n '''Changes a dictionary into a list of tuples.'''\n worddict = wordcount(text)\n countlist = []\n for key in worddict.keys():\n countlist.append((key,worddict[key]))\n countlist = list(reversed(sorted(countlist,key = lambda x: x[1])))\n return countlist\n", "def a...
class Cloud(object): def __init__(self,width=500,height=500): pygame.init() pygame.font.init() self.width = width self.height = height self.cloud = pygame.Surface((width,height)) self.used_pos = [] def render_word(self,word,size,color): '''Creates a surfa...
NickMonzillo/SmartCloud
SmartCloud/__init__.py
Cloud.display
python
def display(self): '''Displays the word cloud to the screen.''' pygame.init() self.display = pygame.display.set_mode((self.width,self.height)) self.display.blit(self.cloud,(0,0)) pygame.display.update() while True: for event in pygame.event.get(): ...
Displays the word cloud to the screen.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/__init__.py#L109-L119
null
class Cloud(object): def __init__(self,width=500,height=500): pygame.init() pygame.font.init() self.width = width self.height = height self.cloud = pygame.Surface((width,height)) self.used_pos = [] def render_word(self,word,size,color): '''Creates a surfa...
NickMonzillo/SmartCloud
SmartCloud/utils.py
dir_freq
python
def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory + '/' + filename)) for word in filewords: if freqdict....
Returns a list of tuples of (word,# of directories it occurs)
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L3-L19
[ "def read_file(filename):\n '''Reads in a .txt file.'''\n with open(filename,'r') as f:\n content = f.read()\n return content\n", "def dir_list(directory):\n '''Returns the list of all files in the directory.'''\n try:\n content = listdir(directory)\n return content\n except...
from os import listdir from wordplay import eliminate_repeats, read_file def dir_list(directory): '''Returns the list of all files in the directory.''' try: content = listdir(directory) return content except WindowsError as winErr: print("Directory error: " + str((winErr))) def re...
NickMonzillo/SmartCloud
SmartCloud/utils.py
dir_list
python
def dir_list(directory): '''Returns the list of all files in the directory.''' try: content = listdir(directory) return content except WindowsError as winErr: print("Directory error: " + str((winErr)))
Returns the list of all files in the directory.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L21-L27
null
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
NickMonzillo/SmartCloud
SmartCloud/utils.py
read_dir
python
def read_dir(directory): '''Returns the text of all files in a directory.''' content = dir_list(directory) text = '' for filename in content: text += read_file(directory + '/' + filename) text += ' ' return text
Returns the text of all files in a directory.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L29-L36
[ "def read_file(filename):\n '''Reads in a .txt file.'''\n with open(filename,'r') as f:\n content = f.read()\n return content\n", "def dir_list(directory):\n '''Returns the list of all files in the directory.'''\n try:\n content = listdir(directory)\n return content\n except...
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
NickMonzillo/SmartCloud
SmartCloud/utils.py
assign_colors
python
def assign_colors(dir_counts): '''Defines the color of a word in the cloud. Counts is a list of tuples in the form (word,occurences) The more files a word occurs in, the more red it appears in the cloud.''' frequencies = map(lambda x: x[1],dir_counts) words = map(lambda x: x[0],dir_counts) maxoc...
Defines the color of a word in the cloud. Counts is a list of tuples in the form (word,occurences) The more files a word occurs in, the more red it appears in the cloud.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L38-L48
null
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
NickMonzillo/SmartCloud
SmartCloud/utils.py
colorize
python
def colorize(occurence,maxoccurence,minoccurence): '''A formula for determining colors.''' if occurence == maxoccurence: color = (255,0,0) elif occurence == minoccurence: color = (0,0,255) else: color = (int((float(occurence)/maxoccurence*255)),0,int(float(minoccurence)/occurence...
A formula for determining colors.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L50-L58
null
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
NickMonzillo/SmartCloud
SmartCloud/utils.py
assign_fonts
python
def assign_fonts(counts,maxsize,minsize,exclude_words): '''Defines the font size of a word in the cloud. Counts is a list of tuples in the form (word,count)''' valid_counts = [] if exclude_words: for i in counts: if i[1] != 1: valid_counts.append(i) else: ...
Defines the font size of a word in the cloud. Counts is a list of tuples in the form (word,count)
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L60-L75
null
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
NickMonzillo/SmartCloud
SmartCloud/utils.py
fontsize
python
def fontsize(count,maxsize,minsize,maxcount): '''A formula for determining font sizes.''' size = int(maxsize - (maxsize)*((float(maxcount-count)/maxcount))) if size < minsize: size = minsize return size
A formula for determining font sizes.
train
https://github.com/NickMonzillo/SmartCloud/blob/481d1ef428427b452a8a787999c1d4a8868a3824/SmartCloud/utils.py#L77-L82
null
from os import listdir from wordplay import eliminate_repeats, read_file def dir_freq(directory): '''Returns a list of tuples of (word,# of directories it occurs)''' content = dir_list(directory) i = 0 freqdict = {} for filename in content: filewords = eliminate_repeats(read_file(directory +...
ONSdigital/sdc-rabbit
sdc/rabbit/publishers.py
Publisher._connect
python
def _connect(self): logger.info("Connecting to rabbit") for url in self._urls: try: self._connection = pika.BlockingConnection(pika.URLParameters(url)) self._channel = self._connection.channel() self._declare() if self._confirm_...
Connect to a RabbitMQ instance :returns: Boolean corresponding to success of connection :rtype: bool
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/publishers.py#L38-L65
[ "def _declare(self):\n raise NotImplementedError('_declare not implemented')\n", "def _declare(self):\n self._channel.exchange_declare(exchange=self._exchange,\n exchange_type=self._exchange_type,\n durable=self._durable_exchange,\n ...
class Publisher(object): """Base class for publishers to RabbitMQ.""" def __init__(self, urls, **kwargs): """Create a new instance of a Publisher class :param urls: List of RabbitMQ cluster URLs :param confirm_delivery: Delivery confirmations toggle :param **kwargs: Custom key/...
ONSdigital/sdc-rabbit
sdc/rabbit/publishers.py
Publisher._disconnect
python
def _disconnect(self): try: self._connection.close() logger.debug("Disconnected from rabbit") except Exception: logger.exception("Unable to close connection")
Cleanly close a RabbitMQ connection. :returns: None
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/publishers.py#L67-L78
null
class Publisher(object): """Base class for publishers to RabbitMQ.""" def __init__(self, urls, **kwargs): """Create a new instance of a Publisher class :param urls: List of RabbitMQ cluster URLs :param confirm_delivery: Delivery confirmations toggle :param **kwargs: Custom key/...
ONSdigital/sdc-rabbit
sdc/rabbit/publishers.py
Publisher.publish_message
python
def publish_message(self, message, content_type=None, headers=None, mandatory=False, immediate=False): logger.debug("Publishing message") try: self._connect() return self._do_publish(mandatory=mandatory, immediate=immediate, ...
Publish a response message to a RabbitMQ instance. :param message: Response message :param content_type: Pika BasicProperties content_type value :param headers: Message header properties :param mandatory: The mandatory flag :param immediate: The immediate flag :returns:...
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/publishers.py#L83-L120
[ "def _connect(self):\n \"\"\"\n Connect to a RabbitMQ instance\n\n :returns: Boolean corresponding to success of connection\n :rtype: bool\n\n \"\"\"\n logger.info(\"Connecting to rabbit\")\n for url in self._urls:\n try:\n self._connection = pika.BlockingConnection(pika.URLPa...
class Publisher(object): """Base class for publishers to RabbitMQ.""" def __init__(self, urls, **kwargs): """Create a new instance of a Publisher class :param urls: List of RabbitMQ cluster URLs :param confirm_delivery: Delivery confirmations toggle :param **kwargs: Custom key/...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.connect
python
def connect(self): count = 1 no_of_servers = len(self._rabbit_urls) while True: server_choice = (count % no_of_servers) - 1 self._url = self._rabbit_urls[server_choice] try: logger.info('Connecting', attempt=count) return pi...
This method connects to RabbitMQ using a SelectConnection object, returning the connection handle. When the connection is established, the on_connection_open method will be invoked by pika. :rtype: pika.SelectConnection
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L58-L88
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.on_channel_open
python
def on_channel_open(self, channel): logger.info('Channel opened', channel=channel) self._channel = channel self.add_on_channel_close_callback() self.setup_exchange(self._exchange)
This method is invoked by pika when the channel has been opened. The channel object is passed in so we can make use of it. Since the channel is now open, we'll declare the exchange to use. :param pika.channel.Channel channel: The channel object
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L172-L184
[ "def add_on_channel_close_callback(self):\n \"\"\"This method tells pika to call the on_channel_closed method if\n RabbitMQ unexpectedly closes the channel.\n\n \"\"\"\n logger.info('Adding channel close callback')\n self._channel.add_on_close_callback(self.on_channel_closed)\n", "def setup_exchang...
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.setup_exchange
python
def setup_exchange(self, exchange_name): logger.info('Declaring exchange', name=exchange_name) self._channel.exchange_declare(self.on_exchange_declareok, exchange_name, self._exchange_type)
Setup the exchange on RabbitMQ by invoking the Exchange.Declare RPC command. When it is complete, the on_exchange_declareok method will be invoked by pika. :param str|unicode exchange_name: The name of the exchange to declare
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L186-L197
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.setup_queue
python
def setup_queue(self, queue_name): logger.info('Declaring queue', name=queue_name) self._channel.queue_declare( self.on_queue_declareok, queue_name, durable=self._durable_queue )
Setup the queue on RabbitMQ by invoking the Queue.Declare RPC command. When it is complete, the on_queue_declareok method will be invoked by pika. :param str|unicode queue_name: The name of the queue to declare.
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L209-L220
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.on_queue_declareok
python
def on_queue_declareok(self, method_frame): logger.info('Binding to rabbit', exchange=self._exchange, queue=self._queue) self._channel.queue_bind(self.on_bindok, self._queue, self._exchange)
Method invoked by pika when the Queue.Declare RPC call made in setup_queue has completed. In this method we will bind the queue and exchange together with the routing key by issuing the Queue.Bind RPC command. When this command is complete, the on_bindok method will be invoked by pika. ...
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L222-L233
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.on_consumer_cancelled
python
def on_consumer_cancelled(self, method_frame): msg = 'Consumer was cancelled remotely, shutting down: {0!r}' logger.info(msg.format(method_frame)) if self._channel: self._channel.close()
Invoked by pika when RabbitMQ sends a Basic.Cancel for a consumer receiving messages. :param pika.frame.Method method_frame: The Basic.Cancel frame
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L244-L254
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.acknowledge_message
python
def acknowledge_message(self, delivery_tag, **kwargs): logger.info('Acknowledging message', delivery_tag=delivery_tag, **kwargs) self._channel.basic_ack(delivery_tag)
Acknowledge the message delivery from RabbitMQ by sending a Basic.Ack RPC method for the delivery tag. :param int delivery_tag: The delivery tag from the Basic.Deliver frame
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L256-L264
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.nack_message
python
def nack_message(self, delivery_tag, **kwargs): logger.info('Nacking message', delivery_tag=delivery_tag, **kwargs) self._channel.basic_nack(delivery_tag)
Negative acknowledge a message :param int delivery_tag: The deliver tag from the Basic.Deliver frame
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L266-L273
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.reject_message
python
def reject_message(self, delivery_tag, requeue=False, **kwargs): logger.info('Rejecting message', delivery_tag=delivery_tag, **kwargs) self._channel.basic_reject(delivery_tag, requeue=requeue)
Reject the message delivery from RabbitMQ by sending a Basic.Reject RPC method for the delivery tag. :param int delivery_tag: The delivery tag from the Basic.Deliver frame
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L275-L282
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.on_message
python
def on_message(self, unused_channel, basic_deliver, properties, body): logger.info( 'Received message', delivery_tag=basic_deliver.delivery_tag, app_id=properties.app_id, msg=body, ) self.acknowledge_message(basic_deliver.delivery_tag)
Invoked by pika when a message is delivered from RabbitMQ. The channel is passed for your convenience. The basic_deliver object that is passed in carries the exchange, routing key, delivery tag and a redelivered flag for the message. The properties passed in is an instance of BasicProper...
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L284-L304
[ "def acknowledge_message(self, delivery_tag, **kwargs):\n \"\"\"Acknowledge the message delivery from RabbitMQ by sending a\n Basic.Ack RPC method for the delivery tag.\n\n :param int delivery_tag: The delivery tag from the Basic.Deliver frame\n\n \"\"\"\n logger.info('Acknowledging message', deliver...
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.stop_consuming
python
def stop_consuming(self): if self._channel: logger.info('Sending a Basic.Cancel RPC command to RabbitMQ') self._channel.basic_cancel(self.on_cancelok, self._consumer_tag)
Tell RabbitMQ that you would like to stop consuming by sending the Basic.Cancel RPC command.
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L318-L325
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.open_channel
python
def open_channel(self): logger.info('Creating a new channel') self._connection.channel(on_open_callback=self.on_channel_open)
Open a new channel with RabbitMQ by issuing the Channel.Open RPC command. When RabbitMQ responds that the channel is open, the on_channel_open callback will be invoked by pika.
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L362-L369
null
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.run
python
def run(self): logger.debug('Running rabbit consumer') self._connection = self.connect() self._connection.ioloop.start()
Run the example consumer by connecting to RabbitMQ and then starting the IOLoop to block and allow the SelectConnection to operate.
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L371-L378
[ "def connect(self):\n \"\"\"This method connects to RabbitMQ using a SelectConnection object,\n returning the connection handle.\n\n When the connection is established, the on_connection_open method\n will be invoked by pika.\n\n :rtype: pika.SelectConnection\n\n \"\"\"\n\n count = 1\n no_of...
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
AsyncConsumer.stop
python
def stop(self): logger.info('Stopping') self._closing = True self.stop_consuming() logger.info('Stopped')
Cleanly shutdown the connection to RabbitMQ by stopping the consumer with RabbitMQ. When RabbitMQ confirms the cancellation, on_cancelok will be invoked by pika, which will then closing the channel and connection. The IOLoop is started again because this method is invoked when CTRL-C is ...
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L380-L394
[ "def stop_consuming(self):\n \"\"\"Tell RabbitMQ that you would like to stop consuming by sending the\n Basic.Cancel RPC command.\n\n \"\"\"\n if self._channel:\n logger.info('Sending a Basic.Cancel RPC command to RabbitMQ')\n self._channel.basic_cancel(self.on_cancelok, self._consumer_tag...
class AsyncConsumer: """This is an example consumer that will handle unexpected interactions with RabbitMQ such as channel and connection closures. If RabbitMQ closes the connection, it will reopen it. You should look at the output, as there are limited reasons why the connection may be closed, whi...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
MessageConsumer.tx_id
python
def tx_id(properties): tx_id = properties.headers['tx_id'] logger.info("Retrieved tx_id from message properties: tx_id={}".format(tx_id)) return tx_id
Gets the tx_id for a message from a rabbit queue, using the message properties. Will raise KeyError if tx_id is missing from message headers. : param properties: Message properties : returns: tx_id of survey response : rtype: str
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L444-L457
null
class MessageConsumer(TornadoConsumer): """This is a queue consumer that handles messages from RabbitMQ message queues. On receipt of a message it takes a number of params from the message properties, processes the message, and (if successful) positively acknowledges the publishing queue. If a mes...
ONSdigital/sdc-rabbit
sdc/rabbit/consumers.py
MessageConsumer.on_message
python
def on_message(self, unused_channel, basic_deliver, properties, body): if self.check_tx_id: try: tx_id = self.tx_id(properties) logger.info('Received message', queue=self._queue, delivery_tag=basic_deliver.deliv...
Called on receipt of a message from a queue. Processes the message using the self._process method or function and positively acknowledges the queue if successful. If processing is not succesful, the message can either be rejected, quarantined or negatively acknowledged, depending on the...
train
https://github.com/ONSdigital/sdc-rabbit/blob/985adfdb09cf1b263a1f311438baeb42cbcb503a/sdc/rabbit/consumers.py#L500-L580
[ "def acknowledge_message(self, delivery_tag, **kwargs):\n \"\"\"Acknowledge the message delivery from RabbitMQ by sending a\n Basic.Ack RPC method for the delivery tag.\n\n :param int delivery_tag: The delivery tag from the Basic.Deliver frame\n\n \"\"\"\n logger.info('Acknowledging message', deliver...
class MessageConsumer(TornadoConsumer): """This is a queue consumer that handles messages from RabbitMQ message queues. On receipt of a message it takes a number of params from the message properties, processes the message, and (if successful) positively acknowledges the publishing queue. If a mes...
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/file_queue_handlers.py
RegexFileQueueHandlerIncoming.process
python
def process(self, event): logger.info(f"{self}: put {event.src_path}") self.queue.put(os.path.basename(event.src_path))
Put and process tasks in queue.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/file_queue_handlers.py#L26-L30
null
class RegexFileQueueHandlerIncoming(RegexMatchingEventHandler): def __init__(self, queue=None, regexes=None, **kwargs): super().__init__(regexes=regexes) self.queue = queue def __repr__(self, queue=None, regexes=None, **kwargs): return f"{self.__class__.__name__}({self.queue})" def...
erikvw/django-collect-offline-files
django_collect_offline_files/confirmation.py
Confirmation.confirm
python
def confirm(self, batch_id=None, filename=None): if batch_id or filename: export_history = self.history_model.objects.using(self.using).filter( Q(batch_id=batch_id) | Q(filename=filename), sent=True, confirmation_code__isnull=True, ) ...
Flags the batch as confirmed by updating confirmation_datetime on the history model for this batch.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/confirmation.py#L24-L48
null
class Confirmation: """A class to manage confirmation of sent / transferred transaction files. """ def __init__(self, history_model=None, using=None, **kwargs): self.history_model = history_model self.using = using
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/base_file_queue.py
BaseFileQueue.reload
python
def reload(self, regexes=None, **kwargs): combined = re.compile("(" + ")|(".join(regexes) + ")", re.I) pending_files = os.listdir(self.src_path) or [] pending_files.sort() for filename in pending_files: if re.match(combined, filename): self.put(os.path.join(se...
Reloads /path/to/filenames into the queue that match the regexes.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/base_file_queue.py#L34-L43
null
class BaseFileQueue(Queue): file_archiver_cls = FileArchiver def __init__(self, src_path=None, dst_path=None, **kwargs): super().__init__(maxsize=kwargs.get("maxsize", 0)) self.src_path = src_path self.dst_path = dst_path try: self.file_archiver = self.file_archiver...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_file_sender.py
TransactionFileSender.send
python
def send(self, filenames=None): try: with self.ssh_client.connect() as ssh_conn: with self.sftp_client.connect(ssh_conn) as sftp_conn: for filename in filenames: sftp_conn.copy(filename=filename) self.archive(filenam...
Sends the file to the remote host and archives the sent file locally.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_file_sender.py#L39-L55
[ "def update_history(self, filename=None):\n try:\n obj = self.history_model.objects.using(self.using).get(filename=filename)\n except self.history_model.DoesNotExist as e:\n raise TransactionFileSenderError(\n f\"History does not exist for file '{filename}'. Got {e}\"\n ) from ...
class TransactionFileSender: def __init__( self, remote_host=None, username=None, src_path=None, dst_tmp=None, dst_path=None, archive_path=None, history_model=None, using=None, update_history_model=None, **kwargs, ): ...
erikvw/django-collect-offline-files
django_collect_offline_files/sftp_client.py
SFTPClient.copy
python
def copy(self, filename=None): dst = os.path.join(self.dst_path, filename) src = os.path.join(self.src_path, filename) dst_tmp = os.path.join(self.dst_tmp, filename) self.put(src=src, dst=dst_tmp, callback=self.update_progress, confirm=True) self.rename(src=dst_tmp, dst=dst)
Puts on destination as a temp file, renames on the destination.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/sftp_client.py#L38-L46
null
class SFTPClient(ClosingContextManager): """Wraps open_sftp with folder defaults for copy. Copy is two steps; put then rename. """ def __init__( self, src_path=None, dst_path=None, dst_tmp=None, verbose=None, **kwargs ): self.src_path = src_path self.dst_tmp = dst_tmp ...
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/process_queue.py
process_queue
python
def process_queue(queue=None, **kwargs): while True: item = queue.get() if item is None: queue.task_done() logger.info(f"{queue}: exiting process queue.") break filename = os.path.basename(item) try: queue.next_task(item, **kwargs) ...
Loops and waits on queue calling queue's `next_task` method. If an exception occurs, log the error, log the exception, and break.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/process_queue.py#L11-L39
[ "def next_task(self, item, raise_exceptions=None, **kwargs):\n \"\"\"Deserializes all transactions for this batch and\n archives the file.\n \"\"\"\n filename = os.path.basename(item)\n batch = self.get_batch(filename)\n tx_deserializer = self.tx_deserializer_cls(\n allow_self=self.allow_se...
import os import logging import sys from django.core.management.color import color_style logger = logging.getLogger("django_collect_offline_files") style = color_style()
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/incoming_transactions_file_queue.py
IncomingTransactionsFileQueue.next_task
python
def next_task(self, item, **kwargs): filename = os.path.basename(item) try: self.tx_importer.import_batch(filename=filename) except TransactionImporterError as e: raise TransactionsFileQueueError(e) from e else: self.archive(filename)
Calls import_batch for the next filename in the queue and "archives" the file. The archive folder is typically the folder for the deserializer queue.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/incoming_transactions_file_queue.py#L17-L29
[ "def archive(self, filename=None):\n try:\n self.file_archiver.archive(filename)\n except FileArchiverError as e:\n raise TransactionsFileQueueError(e) from e\n" ]
class IncomingTransactionsFileQueue(BaseFileQueue): tx_importer_cls = TransactionImporter def __init__(self, src_path=None, raise_exceptions=None, **kwargs): super().__init__(src_path=src_path, **kwargs) self.tx_importer = self.tx_importer_cls(import_path=src_path, **kwargs) self.raise...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
JSONLoadFile.read
python
def read(self): p = os.path.join(self.path, self.name) try: with open(p) as f: json_text = f.read() except FileNotFoundError as e: raise JSONFileError(e) from e try: json.loads(json_text) except (json.JSONDecodeError, TypeError)...
Returns the file contents as validated JSON text.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L62-L75
null
class JSONLoadFile: def __init__(self, name=None, path=None, **kwargs): self._deserialized_objects = None self.deserialize = deserialize self.name = name self.path = path def __str__(self): return os.path.join(self.path, self.name) def __repr__(self): return...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
JSONLoadFile.deserialized_objects
python
def deserialized_objects(self): if not self._deserialized_objects: json_text = self.read() self._deserialized_objects = self.deserialize(json_text=json_text) return self._deserialized_objects
Returns a generator of deserialized objects.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L78-L84
[ "def read(self):\n \"\"\"Returns the file contents as validated JSON text.\n \"\"\"\n p = os.path.join(self.path, self.name)\n try:\n with open(p) as f:\n json_text = f.read()\n except FileNotFoundError as e:\n raise JSONFileError(e) from e\n try:\n json.loads(json_...
class JSONLoadFile: def __init__(self, name=None, path=None, **kwargs): self._deserialized_objects = None self.deserialize = deserialize self.name = name self.path = path def __str__(self): return os.path.join(self.path, self.name) def __repr__(self): return...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
BatchHistory.exists
python
def exists(self, batch_id=None): try: self.model.objects.get(batch_id=batch_id) except self.model.DoesNotExist: return False return True
Returns True if batch_id exists in the history.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L91-L98
null
class BatchHistory: def __init__(self, model=None): self.model = model or ImportedTransactionFileHistory def close(self, batch_id): obj = self.model.objects.get(batch_id=batch_id) obj.consumed = True obj.consumed_datetime = get_utcnow() obj.save() def update( ...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
BatchHistory.update
python
def update( self, filename=None, batch_id=None, prev_batch_id=None, producer=None, count=None, ): # TODO: refactor model enforce unique batch_id # TODO: refactor model to not allow NULLs if not filename: raise BatchHistoryError("Inv...
Creates an history model instance.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L106-L140
[ "def exists(self, batch_id=None):\n \"\"\"Returns True if batch_id exists in the history.\n \"\"\"\n try:\n self.model.objects.get(batch_id=batch_id)\n except self.model.DoesNotExist:\n return False\n return True\n" ]
class BatchHistory: def __init__(self, model=None): self.model = model or ImportedTransactionFileHistory def exists(self, batch_id=None): """Returns True if batch_id exists in the history. """ try: self.model.objects.get(batch_id=batch_id) except self.model.D...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
ImportBatch.populate
python
def populate(self, deserialized_txs=None, filename=None, retry=None): if not deserialized_txs: raise BatchError("Failed to populate batch. There are no objects to add.") self.filename = filename if not self.filename: raise BatchError("Invalid filename. Got None") ...
Populates the batch with unsaved model instances from a generator of deserialized objects.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L160-L179
[ "def peek(self, deserialized_tx):\n \"\"\"Peeks into first tx and sets self attrs or raise.\n \"\"\"\n self.batch_id = deserialized_tx.object.batch_id\n self.prev_batch_id = deserialized_tx.object.prev_batch_id\n self.producer = deserialized_tx.object.producer\n if self.batch_history.exists(batch_...
class ImportBatch: def __init__(self, **kwargs): self._valid_sequence = None self.filename = None self.batch_id = None self.prev_batch_id = None self.producer = None self.objects = [] self.batch_history = BatchHistory() self.model = IncomingTransaction...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
ImportBatch.peek
python
def peek(self, deserialized_tx): self.batch_id = deserialized_tx.object.batch_id self.prev_batch_id = deserialized_tx.object.prev_batch_id self.producer = deserialized_tx.object.producer if self.batch_history.exists(batch_id=self.batch_id): raise BatchAlreadyProcessed( ...
Peeks into first tx and sets self attrs or raise.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L181-L197
null
class ImportBatch: def __init__(self, **kwargs): self._valid_sequence = None self.filename = None self.batch_id = None self.prev_batch_id = None self.producer = None self.objects = [] self.batch_history = BatchHistory() self.model = IncomingTransaction...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
ImportBatch.save
python
def save(self): saved = 0 if not self.objects: raise BatchError("Save failed. Batch is empty") for deserialized_tx in self.objects: try: self.model.objects.get(pk=deserialized_tx.pk) except self.model.DoesNotExist: data = {} ...
Saves all model instances in the batch as model.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L199-L217
null
class ImportBatch: def __init__(self, **kwargs): self._valid_sequence = None self.filename = None self.batch_id = None self.prev_batch_id = None self.producer = None self.objects = [] self.batch_history = BatchHistory() self.model = IncomingTransaction...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_importer.py
TransactionImporter.import_batch
python
def import_batch(self, filename): batch = self.batch_cls() json_file = self.json_file_cls(name=filename, path=self.path) try: deserialized_txs = json_file.deserialized_objects except JSONFileError as e: raise TransactionImporterError(e) from e try: ...
Imports the batch of outgoing transactions into model IncomingTransaction.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_importer.py#L264-L284
null
class TransactionImporter: """Imports transactions from a file as incoming transaction. """ batch_cls = ImportBatch json_file_cls = JSONLoadFile def __init__(self, import_path=None, **kwargs): self.path = import_path
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/deserialize_transactions_file_queue.py
DeserializeTransactionsFileQueue.next_task
python
def next_task(self, item, raise_exceptions=None, **kwargs): filename = os.path.basename(item) batch = self.get_batch(filename) tx_deserializer = self.tx_deserializer_cls( allow_self=self.allow_self, override_role=self.override_role ) try: tx_deserializer.d...
Deserializes all transactions for this batch and archives the file.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/deserialize_transactions_file_queue.py#L25-L42
[ "def archive(self, filename=None):\n try:\n self.file_archiver.archive(filename)\n except FileArchiverError as e:\n raise TransactionsFileQueueError(e) from e\n", "def get_batch(self, filename=None):\n \"\"\"Returns a batch instance given the filename.\n \"\"\"\n try:\n history...
class DeserializeTransactionsFileQueue(BaseFileQueue): batch_cls = TransactionImporterBatch tx_deserializer_cls = TransactionDeserializer def __init__( self, history_model=None, allow_self=None, override_role=None, **kwargs ): super().__init__(**kwargs) self.history_model = his...
erikvw/django-collect-offline-files
django_collect_offline_files/file_queues/deserialize_transactions_file_queue.py
DeserializeTransactionsFileQueue.get_batch
python
def get_batch(self, filename=None): try: history = self.history_model.objects.get(filename=filename) except self.history_model.DoesNotExist as e: raise TransactionsFileQueueError( f"Batch history not found for '{filename}'." ) from e if history...
Returns a batch instance given the filename.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/file_queues/deserialize_transactions_file_queue.py#L44-L60
null
class DeserializeTransactionsFileQueue(BaseFileQueue): batch_cls = TransactionImporterBatch tx_deserializer_cls = TransactionDeserializer def __init__( self, history_model=None, allow_self=None, override_role=None, **kwargs ): super().__init__(**kwargs) self.history_model = his...
erikvw/django-collect-offline-files
django_collect_offline_files/transaction/transaction_exporter.py
TransactionExporter.export_batch
python
def export_batch(self): batch = self.batch_cls( model=self.model, history_model=self.history_model, using=self.using ) if batch.items: try: json_file = self.json_file_cls(batch=batch, path=self.path) json_file.write() except JSO...
Returns a batch instance after exporting a batch of txs.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/transaction/transaction_exporter.py#L179-L193
null
class TransactionExporter: """Export pending OutgoingTransactions to a file in JSON format and update the export `History` model. """ batch_cls = ExportBatch json_file_cls = JSONDumpFile model = OutgoingTransaction history_model = ExportedTransactionFileHistory def __init__(self, expo...
erikvw/django-collect-offline-files
django_collect_offline_files/apps.py
AppConfig.make_required_folders
python
def make_required_folders(self): for folder in [ self.pending_folder, self.usb_incoming_folder, self.outgoing_folder, self.incoming_folder, self.archive_folder, self.tmp_folder, self.log_folder, ]: if not os....
Makes all folders declared in the config if they do not exist.
train
https://github.com/erikvw/django-collect-offline-files/blob/78f61c823ea3926eb88206b019b5dca3c36017da/django_collect_offline_files/apps.py#L31-L45
null
class AppConfig(DjangoAppConfig): name = "django_collect_offline_files" verbose_name = "File support for data synchronization" django_collect_offline_files_using = True user = settings.DJANGO_COLLECT_OFFLINE_FILES_USER remote_host = settings.DJANGO_COLLECT_OFFLINE_FILES_REMOTE_HOST usb_volume =...
GGiecold/Concurrent_AP
Concurrent_AP.py
chunk_generator
python
def chunk_generator(N, n): chunk_size = get_chunk_size(N, n) for start in range(0, N, chunk_size): yield slice(start, min(start + chunk_size, N))
Returns a generator of slice objects. Parameters ---------- N : int The size of one of the dimensions of a two-dimensional array. n : int The number of arrays of shape ('N', 'get_chunk_size(N, n)') that fit into memory. Returns ------- Slice objects of...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L118-L139
[ "def get_chunk_size(N, n):\n \"\"\"Given a two-dimensional array with a dimension of size 'N', \n determine the number of rows or columns that can fit into memory.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
parse_options
python
def parse_options(): parser = optparse.OptionParser( usage = "Usage: %prog [options] file_name\n\n" "file_name denotes the path where the data to be " "processed by affinity propagation clustering is stored" ) parse...
Specify the command line options to parse. Returns ------- opts : optparse.Values instance Contains the option values in its 'dict' member variable. args[0] : string or file-handler The name of the file storing the data-set submitted for Affinity Propagation clustering.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L142-L229
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
check_HDF5_arrays
python
def check_HDF5_arrays(hdf5_file, N, convergence_iter): Worker.hdf5_lock.acquire() with tables.open_file(hdf5_file, 'r+') as fileh: if not hasattr(fileh.root, 'aff_prop_group'): fileh.create_group(fileh.root, "aff_prop_group") atom = tables.Float32Atom() filters = None ...
Check that the HDF5 data structure of file handle 'hdf5_file' has all the required nodes organizing the various two-dimensional arrays required for Affinity Propagation clustering ('Responsibility' matrix, 'Availability', etc.). Parameters ---------- hdf5_file : string or fil...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L232-L276
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
get_sum
python
def get_sum(hdf5_file, path, array_out, out_lock, rows_slice): Worker.hdf5_lock.acquire() with tables.open_file(hdf5_file, 'r+') as fileh: hdf5_array = fileh.get_node(path) tmp = hdf5_array[rows_slice, ...] Worker.hdf5_lock.release() szum = np.sum(tmp, axis = 0) ...
Access an array at node 'path' of the 'hdf5_file', compute the sums along a slice of rows specified by 'rows_slice' and add the resulting vector to 'array_out'. Parameters ---------- hdf5_file : string or file handle The location of the HDF5 data structure containing the matri...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L433-L471
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
terminate_processes
python
def terminate_processes(pid_list): for proc in psutil.process_iter(): if proc.pid in pid_list: proc.terminate()
Terminate a list of processes by sending to each of them a SIGTERM signal, pre-emptively checking if its PID might have been reused. Parameters ---------- pid_list : list A list of process identifiers identifying active processes.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L522-L534
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
compute_similarities
python
def compute_similarities(hdf5_file, data, N_processes): slice_queue = multiprocessing.JoinableQueue() pid_list = [] for i in range(N_processes): worker = Similarities_worker(hdf5_file, '/aff_prop_group/similarities', data, slice_queue) worker.daemon...
Compute a matrix of pairwise L2 Euclidean distances among samples from 'data'. This computation is to be done in parallel by 'N_processes' distinct processes. Those processes (which are instances of the class 'Similarities_worker') are prevented from simultaneously accessing the HDF5 data stru...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L537-L562
[ "def chunk_generator(N, n):\n \"\"\"Returns a generator of slice objects.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n The number of arrays of shape ('N', 'get_chunk_size(N, n)') that fit into\n memory.\n\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
add_preference
python
def add_preference(hdf5_file, preference): Worker.hdf5_lock.acquire() with tables.open_file(hdf5_file, 'r+') as fileh: S = fileh.root.aff_prop_group.similarities diag_ind = np.diag_indices(S.nrows) S[diag_ind] = preference Worker.hdf5_lock.release()
Assign the value 'preference' to the diagonal entries of the matrix of similarities stored in the HDF5 data structure at 'hdf5_file'.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L565-L578
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
add_fluctuations
python
def add_fluctuations(hdf5_file, N_columns, N_processes): random_state = np.random.RandomState(0) slice_queue = multiprocessing.JoinableQueue() pid_list = [] for i in range(N_processes): worker = Fluctuations_worker(hdf5_file, '/aff_prop_group/similarities', ...
This procedure organizes the addition of small fluctuations on top of a matrix of similarities at 'hdf5_file' across 'N_processes' different processes. Each of those processes is an instance of the class 'Fluctuations_Worker' defined elsewhere in this module.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L581-L608
[ "def chunk_generator(N, n):\n \"\"\"Returns a generator of slice objects.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n The number of arrays of shape ('N', 'get_chunk_size(N, n)') that fit into\n memory.\n\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
compute_responsibilities
python
def compute_responsibilities(hdf5_file, N_columns, damping, N_processes): slice_queue = multiprocessing.JoinableQueue() pid_list = [] for i in range(N_processes): worker = Responsibilities_worker(hdf5_file, '/aff_prop_group', N_columns, damping, slice_queue) worker.d...
Organize the computation and update of the responsibility matrix for Affinity Propagation clustering with 'damping' as the eponymous damping parameter. Each of the processes concurrently involved in this task is an instance of the class 'Responsibilities_worker' defined above.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L611-L634
[ "def chunk_generator(N, n):\n \"\"\"Returns a generator of slice objects.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n The number of arrays of shape ('N', 'get_chunk_size(N, n)') that fit into\n memory.\n\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
rows_sum_init
python
def rows_sum_init(hdf5_file, path, out_lock, *numpy_args): global g_hdf5_file, g_path, g_out, g_out_lock g_hdf5_file, g_path, g_out_lock = hdf5_file, path, out_lock g_out = to_numpy_array(*numpy_args)
Create global variables sharing the same object as the one pointed by 'hdf5_file', 'path' and 'out_lock'. Also Create a NumPy array copy of a multiprocessing.Array ctypes array specified by '*numpy_args'.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L637-L647
[ "def to_numpy_array(multiprocessing_array, shape, dtype):\n \"\"\"Convert a share multiprocessing array to a numpy array.\n No data copying involved.\n \"\"\"\n\n return np.frombuffer(multiprocessing_array.get_obj(),\n dtype = dtype).reshape(shape)\n" ]
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
to_numpy_array
python
def to_numpy_array(multiprocessing_array, shape, dtype): return np.frombuffer(multiprocessing_array.get_obj(), dtype = dtype).reshape(shape)
Convert a share multiprocessing array to a numpy array. No data copying involved.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L655-L661
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
compute_rows_sum
python
def compute_rows_sum(hdf5_file, path, N_columns, N_processes, method = 'Process'): """Parallel computation of the sums across the rows of two-dimensional array accessible at the node specified by 'path' in the 'hdf5_file' hierarchical data format. """ assert isinstance(me...
Parallel computation of the sums across the rows of two-dimensional array accessible at the node specified by 'path' in the 'hdf5_file' hierarchical data format.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L664-L709
[ "def get_chunk_size(N, n):\n \"\"\"Given a two-dimensional array with a dimension of size 'N', \n determine the number of rows or columns that can fit into memory.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
compute_availabilities
python
def compute_availabilities(hdf5_file, N_columns, damping, N_processes, rows_sum): slice_queue = multiprocessing.JoinableQueue() pid_list = [] for i in range(N_processes): worker = Availabilities_worker(hdf5_file, '/aff_prop_group', N_columns, damping, slice_queue, rows_s...
Coordinates the computation and update of the availability matrix for Affinity Propagation clustering. Parameters ---------- hdf5_file : string or file handle Specify access to the hierarchical data format used throughout all the iterations of message-passing between data-point...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L712-L754
[ "def chunk_generator(N, n):\n \"\"\"Returns a generator of slice objects.\n\n Parameters\n ----------\n N : int\n The size of one of the dimensions of a two-dimensional array. \n\n n : int\n The number of arrays of shape ('N', 'get_chunk_size(N, n)') that fit into\n memory.\n\n ...
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
check_convergence
python
def check_convergence(hdf5_file, iteration, convergence_iter, max_iter): Worker.hdf5_lock.acquire() with tables.open_file(hdf5_file, 'r+') as fileh: A = fileh.root.aff_prop_group.availabilities R = fileh.root.aff_prop_group.responsibilities P = fileh.root.aff_prop_group.parallel_up...
If the estimated number of clusters has not changed for 'convergence_iter' consecutive iterations in a total of 'max_iter' rounds of message-passing, the procedure herewith returns 'True'. Otherwise, returns 'False'. Parameter 'iteration' identifies the run of message-passing t...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L757-L790
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
cluster_labels_A
python
def cluster_labels_A(hdf5_file, c, lock, I, rows_slice): with Worker.hdf5_lock: with tables.open_file(hdf5_file, 'r+') as fileh: S = fileh.root.aff_prop_group.similarities s = S[rows_slice, ...] s = np.argmax(s[:, I], axis = 1) with lock: ...
One of the task to be performed by a pool of subprocesses, as the first step in identifying the cluster labels and indices of the cluster centers for Affinity Propagation clustering.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L827-L843
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
cluster_labels_B
python
def cluster_labels_B(hdf5_file, s_reduced, lock, I, ii, iix, rows_slice): with Worker.hdf5_lock: with tables.open_file(hdf5_file, 'r+') as fileh: S = fileh.root.aff_prop_group.similarities s = S[rows_slice, ...] s = s[:, ii] s = s[iix[rows_slice]] with l...
Second task to be performed by a pool of subprocesses before the cluster labels and cluster center indices can be identified.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L846-L862
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
get_cluster_labels
python
def get_cluster_labels(hdf5_file, N_processes): with Worker.hdf5_lock: with tables.open_file(hdf5_file, 'r+') as fileh: A = fileh.root.aff_prop_group.availabilities R = fileh.root.aff_prop_group.responsibilities N = A.nrows diag_ind = np.diag_indices(N) ...
Returns ------- cluster_centers_indices : array of shape (n_clusters,) Indices of cluster centers labels : array of shape (n_samples,) Specify the label of the cluster to which each point has been assigned.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L884-L990
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
output_clusters
python
def output_clusters(labels, cluster_centers_indices): here = os.getcwd() try: output_directory = os.path.join(here, 'concurrent_AP_output') os.makedirs(output_directory) except OSError: if not os.path.isdir(output_directory): print("ERROR: concurrent_AP: outp...
Write in tab-separated files the vectors of cluster identities and of indices of cluster centers.
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L993-L1020
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
GGiecold/Concurrent_AP
Concurrent_AP.py
set_preference
python
def set_preference(data, chunk_size): N_samples, N_features = data.shape rng = np.arange(0, N_samples, dtype = int) medians = [] for i in range(15): selected_samples = np.random.choice(N_samples, size = chunk_size, replace = False) samples = data[selected_samples, :] ...
Return the median of the distribution of pairwise L2 Euclidean distances between samples (the rows of 'data') as the default preference parameter for Affinity Propagation clustering. Parameters ---------- data : array of shape (N_samples, N_features) The data-set submitted for Affi...
train
https://github.com/GGiecold/Concurrent_AP/blob/d4cebe06268b5d520352a83cadb2f7520650460c/Concurrent_AP.py#L1023-L1080
null
#!/usr/bin/env python # Concurrent_AP/Concurrent_AP.py # Author: Gregory Giecold for the GC Yuan Lab # Affiliation: Harvard University # Contact: g.giecold@gmail.com, ggiecold@jimmy.harvard.edu """Concurrent_AP is a scalable and concurrent programming implementation of Affinity Propagation clustering. Affinity ...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_primary_zone
python
def create_primary_zone(self, account_name, zone_name): zone_properties = {"name": zone_name, "accountName": account_name, "type": "PRIMARY"} primary_zone_info = {"forceImport": True, "createType": "NEW"} zone_data = {"properties": zone_properties, "primaryCreateInfo": primary_zone_info} ...
Creates a new primary zone. Arguments: account_name -- The name of the account that will contain this zone. zone_name -- The name of the zone. It must be unique.
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L29-L40
[ "def post(self, uri, json=None):\n if json is not None:\n return self._do_call(uri, \"POST\", body=json)\n else:\n return self._do_call(uri, \"POST\")\n" ]
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_primary_zone_by_upload
python
def create_primary_zone_by_upload(self, account_name, zone_name, bind_file): zone_properties = {"name": zone_name, "accountName": account_name, "type": "PRIMARY"} primary_zone_info = {"forceImport": True, "createType": "UPLOAD"} zone_data = {"properties": zone_properties, "primaryCreateInfo": pr...
Creates a new primary zone by uploading a bind file Arguments: account_name -- The name of the account that will contain this zone. zone_name -- The name of the zone. It must be unique. bind_file -- The file to upload.
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L43-L57
[ "def post_multi_part(self, uri, files):\n #use empty string for content type so we don't set it\n return self._do_call(uri, \"POST\", files=files, content_type=\"\")\n" ]
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_primary_zone_by_axfr
python
def create_primary_zone_by_axfr(self, account_name, zone_name, master, tsig_key=None, key_value=None): zone_properties = {"name": zone_name, "accountName": account_name, "type": "PRIMARY"} if tsig_key is not None and key_value is not None: name_server_info = {"ip": master, "tsigKey": tsig_ke...
Creates a new primary zone by zone transferring off a master. Arguments: account_name -- The name of the account that will contain this zone. zone_name -- The name of the zone. It must be unique. master -- Primary name server IP address. Keyword Arguments: tsig_key -- ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L60-L81
null
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_secondary_zone
python
def create_secondary_zone(self, account_name, zone_name, master, tsig_key=None, key_value=None): zone_properties = {"name": zone_name, "accountName": account_name, "type": "SECONDARY"} if tsig_key is not None and key_value is not None: name_server_info = {"ip": master, "tsigKey": tsig_key, "...
Creates a new secondary zone. Arguments: account_name -- The name of the account. zone_name -- The name of the zone. master -- Primary name server IP address. Keyword Arguments: tsig_key -- For TSIG-enabled zones: The transaction signature key. NOTE:...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L84-L107
null
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.get_zones_of_account
python
def get_zones_of_account(self, account_name, q=None, **kwargs): uri = "/v1/accounts/" + account_name + "/zones" params = build_params(q, kwargs) return self.rest_api_connection.get(uri, params)
Returns a list of zones for the specified account. Arguments: account_name -- The name of the account. Keyword Arguments: q -- The search parameters, in a dict. Valid keys are: name - substring match of the zone name zone_type - one of: PRIMAR...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L130-L155
[ "def build_params(q, args):\n params = {}\n params.update(args)\n if q is not None:\n all = []\n for k in q:\n all.append(\"%s:%s\" % (k, q[k]))\n params['q']= ' '.join(all)\n return params\n", "def get(self, uri, params=None):\n if params is None:\n params = ...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.get_zones
python
def get_zones(self, q=None, **kwargs): uri = "/v1/zones" params = build_params(q, kwargs) return self.rest_api_connection.get(uri, params)
Returns a list of zones across all of the user's accounts. Keyword Arguments: q -- The search parameters, in a dict. Valid keys are: name - substring match of the zone name zone_type - one of: PRIMARY SECONDARY ALIAS sor...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L158-L180
[ "def build_params(q, args):\n params = {}\n params.update(args)\n if q is not None:\n all = []\n for k in q:\n all.append(\"%s:%s\" % (k, q[k]))\n params['q']= ' '.join(all)\n return params\n", "def get(self, uri, params=None):\n if params is None:\n params = ...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.edit_secondary_name_server
python
def edit_secondary_name_server(self, zone_name, primary=None, backup=None, second_backup=None): name_server_info = {} if primary is not None: name_server_info['nameServerIp1'] = {'ip':primary} if backup is not None: name_server_info['nameServerIp2'] = {'ip':backup} ...
Edit the axfr name servers of a secondary zone. Arguments: zone_name -- The name of the secondary zone being edited. primary -- The primary name server value. Keyword Arguments: backup -- The backup name server if any. second_backup -- The second backup name server.
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L203-L225
null
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.get_rrsets
python
def get_rrsets(self, zone_name, q=None, **kwargs): uri = "/v1/zones/" + zone_name + "/rrsets" params = build_params(q, kwargs) return self.rest_api_connection.get(uri, params)
Returns the list of RRSets in the specified zone. Arguments: zone_name -- The name of the zone. Keyword Arguments: q -- The search parameters, in a dict. Valid keys are: ttl - must match the TTL for the rrset owner - substring match of the owner name ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L229-L251
[ "def build_params(q, args):\n params = {}\n params.update(args)\n if q is not None:\n all = []\n for k in q:\n all.append(\"%s:%s\" % (k, q[k]))\n params['q']= ' '.join(all)\n return params\n", "def get(self, uri, params=None):\n if params is None:\n params = ...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.get_rrsets_by_type
python
def get_rrsets_by_type(self, zone_name, rtype, q=None, **kwargs): uri = "/v1/zones/" + zone_name + "/rrsets/" + rtype params = build_params(q, kwargs) return self.rest_api_connection.get(uri, params)
Returns the list of RRSets in the specified zone of the specified type. Arguments: zone_name -- The name of the zone. rtype -- The type of the RRSets. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead. Keyword Argument...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L255-L279
[ "def build_params(q, args):\n params = {}\n params.update(args)\n if q is not None:\n all = []\n for k in q:\n all.append(\"%s:%s\" % (k, q[k]))\n params['q']= ' '.join(all)\n return params\n", "def get(self, uri, params=None):\n if params is None:\n params = ...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.get_rrsets_by_type_owner
python
def get_rrsets_by_type_owner(self, zone_name, rtype, owner_name, q=None, **kwargs): uri = "/v1/zones/" + zone_name + "/rrsets/" + rtype + "/" + owner_name params = build_params(q, kwargs) return self.rest_api_connection.get(uri, params)
Returns the list of RRSets in the specified zone of the specified type. Arguments: zone_name -- The name of the zone. rtype -- The type of the RRSets. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead. owner_name -- The...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L283-L308
[ "def build_params(q, args):\n params = {}\n params.update(args)\n if q is not None:\n all = []\n for k in q:\n all.append(\"%s:%s\" % (k, q[k]))\n params['q']= ' '.join(all)\n return params\n", "def get(self, uri, params=None):\n if params is None:\n params = ...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_rrset
python
def create_rrset(self, zone_name, rtype, owner_name, ttl, rdata): if type(rdata) is not list: rdata = [rdata] rrset = {"ttl": ttl, "rdata": rdata} return self.rest_api_connection.post("/v1/zones/" + zone_name + "/rrsets/" + rtype + "/" + owner_name, json.dumps(rrset))
Creates a new RRSet in the specified zone. Arguments: zone_name -- The zone that will contain the new RRSet. The trailing dot is optional. rtype -- The type of the RRSet. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead. ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L311-L330
[ "def post(self, uri, json=None):\n if json is not None:\n return self._do_call(uri, \"POST\", body=json)\n else:\n return self._do_call(uri, \"POST\")\n" ]
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.edit_rrset
python
def edit_rrset(self, zone_name, rtype, owner_name, ttl, rdata, profile=None): if type(rdata) is not list: rdata = [rdata] rrset = {"ttl": ttl, "rdata": rdata} if profile: rrset["profile"] = profile uri = "/v1/zones/" + zone_name + "/rrsets/" + rtype + "/" + owner_...
Updates an existing RRSet in the specified zone. Arguments: zone_name -- The zone that contains the RRSet. The trailing dot is optional. rtype -- The type of the RRSet. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead. ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L333-L356
[ "def put(self, uri, json):\n return self._do_call(uri, \"PUT\", body=json)\n" ]
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.edit_rrset_rdata
python
def edit_rrset_rdata(self, zone_name, rtype, owner_name, rdata, profile=None): if type(rdata) is not list: rdata = [rdata] rrset = {"rdata": rdata} method = "patch" if profile: rrset["profile"] = profile method = "put" uri = "/v1/zones/" + zone...
Updates an existing RRSet's Rdata in the specified zone. Arguments: zone_name -- The zone that contains the RRSet. The trailing dot is optional. rtype -- The type of the RRSet. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L359-L383
null
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.delete_rrset
python
def delete_rrset(self, zone_name, rtype, owner_name): return self.rest_api_connection.delete("/v1/zones/" + zone_name + "/rrsets/" + rtype + "/" + owner_name)
Deletes an RRSet. Arguments: zone_name -- The zone containing the RRSet to be deleted. The trailing dot is optional. rtype -- The type of the RRSet. This can be numeric (1) or if a well-known name is defined for the type (A), you can use it instead. owner_name -- The ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L386-L398
[ "def delete(self, uri):\n return self._do_call(uri, \"DELETE\")\n" ]
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_web_forward
python
def create_web_forward(self, zone_name, request_to, redirect_to, forward_type): web_forward = {"requestTo": request_to, "defaultRedirectTo": redirect_to, "defaultForwardType": forward_type} return self.rest_api_connection.post("/v1/zones/" + zone_name + "/webforwards", json.dumps(web_forward))
Create a web forward record. Arguments: zone_name -- The zone in which the web forward is to be created. request_to -- The URL to be redirected. You may use http:// and ftp://. forward_type -- The type of forward. Valid options include: Framed ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L413-L428
null
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_sb_pool
python
def create_sb_pool(self, zone_name, owner_name, ttl, pool_info, rdata_info, backup_record_list): rrset = self._build_sb_rrset(backup_record_list, pool_info, rdata_info, ttl) return self.rest_api_connection.post("/v1/zones/" + zone_name + "/rrsets/A/" + owner_name, json.dumps(rrset))
Creates a new SB Pool. Arguments: zone_name -- The zone that contains the RRSet. The trailing dot is optional. owner_name -- The owner name for the RRSet. If no trailing dot is supplied, the owner_name is assumed to be relative (foo). If a trailing d...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L551-L571
[ "def _build_sb_rrset(self, backup_record_list, pool_info, rdata_info, ttl):\n rdata = []\n rdata_info_list = []\n for rr in rdata_info:\n rdata.append(rr)\n rdata_info_list.append(rdata_info[rr])\n profile = {\"@context\": \"http://schemas.ultradns.com/SBPool.jsonschema\"}\n for p in po...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.edit_sb_pool
python
def edit_sb_pool(self, zone_name, owner_name, ttl, pool_info, rdata_info, backup_record_list): rrset = self._build_sb_rrset(backup_record_list, pool_info, rdata_info, ttl) return self.rest_api_connection.put("/v1/zones/" + zone_name + "/rrsets/A/" + owner_name, json.dumps(rrset))
Updates an existing SB Pool in the specified zone. :param zone_name: The zone that contains the RRSet. The trailing dot is optional. :param owner_name: The owner name for the RRSet. If no trailing dot is supplied, the owner_name is assumed to be relative (foo). ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L575-L592
[ "def _build_sb_rrset(self, backup_record_list, pool_info, rdata_info, ttl):\n rdata = []\n rdata_info_list = []\n for rr in rdata_info:\n rdata.append(rr)\n rdata_info_list.append(rdata_info[rr])\n profile = {\"@context\": \"http://schemas.ultradns.com/SBPool.jsonschema\"}\n for p in po...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.create_tc_pool
python
def create_tc_pool(self, zone_name, owner_name, ttl, pool_info, rdata_info, backup_record): rrset = self._build_tc_rrset(backup_record, pool_info, rdata_info, ttl) return self.rest_api_connection.post("/v1/zones/" + zone_name + "/rrsets/A/" + owner_name, json.dumps(rrset))
Creates a new TC Pool. Arguments: zone_name -- The zone that contains the RRSet. The trailing dot is optional. owner_name -- The owner name for the RRSet. If no trailing dot is supplied, the owner_name is assumed to be relative (foo). If a trailing d...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L661-L681
[ "def _build_tc_rrset(self, backup_record, pool_info, rdata_info, ttl):\n rdata = []\n rdata_info_list = []\n for rr in rdata_info:\n rdata.append(rr)\n rdata_info_list.append(rdata_info[rr])\n profile = {\"@context\": \"http://schemas.ultradns.com/TCPool.jsonschema\"}\n for p in pool_in...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
ultradns/python_rest_api_client
ultra_rest_client/ultra_rest_client.py
RestApiClient.edit_tc_pool
python
def edit_tc_pool(self, zone_name, owner_name, ttl, pool_info, rdata_info, backup_record): rrset = self._build_tc_rrset(backup_record, pool_info, rdata_info, ttl) return self.rest_api_connection.put("/v1/zones/" + zone_name + "/rrsets/A/" + owner_name, json.dumps(rrset))
Updates an existing TC Pool in the specified zone. :param zone_name: The zone that contains the RRSet. The trailing dot is optional. :param owner_name: The owner name for the RRSet. If no trailing dot is supplied, the owner_name is assumed to be relative (foo). ...
train
https://github.com/ultradns/python_rest_api_client/blob/e4095f28f5cb5e258b768c06ef7cf8b1915aa5ec/ultra_rest_client/ultra_rest_client.py#L685-L702
[ "def _build_tc_rrset(self, backup_record, pool_info, rdata_info, ttl):\n rdata = []\n rdata_info_list = []\n for rr in rdata_info:\n rdata.append(rr)\n rdata_info_list.append(rdata_info[rr])\n profile = {\"@context\": \"http://schemas.ultradns.com/TCPool.jsonschema\"}\n for p in pool_in...
class RestApiClient: def __init__(self, username, password, use_http=False, host="restapi.ultradns.com"): """Initialize a Rest API Client. Arguments: username -- The username of the user password -- The password of the user Keyword Arguments: use_http -- For interna...
pudo/jsonmapping
jsonmapping/transforms.py
transliterate
python
def transliterate(text): text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text
Utility to properly transliterate text.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L11-L15
null
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def coalesce(mapping, bind, values): """ Given a list of values, return the first non-null value. """ for value in values: if value is not None: return [value] ...
pudo/jsonmapping
jsonmapping/transforms.py
slugify
python
def slugify(mapping, bind, values): for value in values: if isinstance(value, six.string_types): value = transliterate(value) value = normality.slugify(value) yield value
Transform all values into URL-capable slugs.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L26-L32
[ "def transliterate(text):\n \"\"\" Utility to properly transliterate text. \"\"\"\n text = unidecode(six.text_type(text))\n text = text.replace('@', 'a')\n return text\n" ]
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/transforms.py
latinize
python
def latinize(mapping, bind, values): for v in values: if isinstance(v, six.string_types): v = transliterate(v) yield v
Transliterate a given string into the latin alphabet.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L35-L40
[ "def transliterate(text):\n \"\"\" Utility to properly transliterate text. \"\"\"\n text = unidecode(six.text_type(text))\n text = text.replace('@', 'a')\n return text\n" ]
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/transforms.py
join
python
def join(mapping, bind, values): return [' '.join([six.text_type(v) for v in values if v is not None])]
Merge all the strings. Put space between them.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L43-L45
null
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/transforms.py
str_func
python
def str_func(name): def func(mapping, bind, values): for v in values: if isinstance(v, six.string_types): v = getattr(v, name)() yield v return func
Apply functions like upper(), lower() and strip().
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L48-L55
null
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/transforms.py
hash
python
def hash(mapping, bind, values): for v in values: if v is None: continue if not isinstance(v, six.string_types): v = six.text_type(v) yield sha1(v.encode('utf-8')).hexdigest()
Generate a sha1 for each of the given values.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L58-L65
null
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/transforms.py
clean
python
def clean(mapping, bind, values): categories = {'C': ' '} for value in values: if isinstance(value, six.string_types): value = normality.normalize(value, lowercase=False, collapse=True, decompose=False, replace_c...
Perform several types of string cleaning for titles etc..
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/transforms.py#L68-L76
null
import re import six from hashlib import sha1 from unidecode import unidecode import normality COLLAPSE = re.compile(r'\s+') def transliterate(text): """ Utility to properly transliterate text. """ text = unidecode(six.text_type(text)) text = text.replace('@', 'a') return text def coalesce(mapping...
pudo/jsonmapping
jsonmapping/value.py
extract_value
python
def extract_value(mapping, bind, data): columns = mapping.get('columns', [mapping.get('column')]) values = [data.get(c) for c in columns] for transform in mapping.get('transforms', []): # any added transforms must also be added to the schema. values = list(TRANSFORMS[transform](mapping, bin...
Given a mapping and JSON schema spec, extract a value from ``data`` and apply certain transformations to normalize the value.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/value.py#L7-L25
[ "def convert_value(bind, value):\n \"\"\" Type casting. \"\"\"\n type_name = get_type(bind)\n try:\n return typecast.cast(type_name, value)\n except typecast.ConverterError:\n return value\n", "def is_empty(value):\n if value is None:\n return True\n if isinstance(value, six...
import six import typecast from jsonmapping.transforms import TRANSFORMS def get_type(bind): """ Detect the ideal type for the data, either using the explicit type definition or the format (for date, date-time, not supported by JSON). """ types = bind.types + [bind.schema.get('format')] for type_nam...
pudo/jsonmapping
jsonmapping/value.py
get_type
python
def get_type(bind): types = bind.types + [bind.schema.get('format')] for type_name in ('date-time', 'date', 'decimal', 'integer', 'boolean', 'number', 'string'): if type_name in types: return type_name return 'string'
Detect the ideal type for the data, either using the explicit type definition or the format (for date, date-time, not supported by JSON).
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/value.py#L28-L36
null
import six import typecast from jsonmapping.transforms import TRANSFORMS def extract_value(mapping, bind, data): """ Given a mapping and JSON schema spec, extract a value from ``data`` and apply certain transformations to normalize the value. """ columns = mapping.get('columns', [mapping.get('column')]) ...
pudo/jsonmapping
jsonmapping/value.py
convert_value
python
def convert_value(bind, value): type_name = get_type(bind) try: return typecast.cast(type_name, value) except typecast.ConverterError: return value
Type casting.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/value.py#L39-L45
[ "def get_type(bind):\n \"\"\" Detect the ideal type for the data, either using the explicit type\n definition or the format (for date, date-time, not supported by JSON). \"\"\"\n types = bind.types + [bind.schema.get('format')]\n for type_name in ('date-time', 'date', 'decimal', 'integer', 'boolean',\n ...
import six import typecast from jsonmapping.transforms import TRANSFORMS def extract_value(mapping, bind, data): """ Given a mapping and JSON schema spec, extract a value from ``data`` and apply certain transformations to normalize the value. """ columns = mapping.get('columns', [mapping.get('column')]) ...
pudo/jsonmapping
jsonmapping/elastic.py
generate_schema_mapping
python
def generate_schema_mapping(resolver, schema_uri, depth=1): visitor = SchemaVisitor({'$ref': schema_uri}, resolver) return _generate_schema_mapping(visitor, set(), depth)
Try and recursively iterate a JSON schema and to generate an ES mapping that encasulates it.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/elastic.py#L6-L10
[ "def _generate_schema_mapping(visitor, path, depth):\n if visitor.is_object:\n mapping = {\n 'type': 'nested',\n '_id': {'path': 'id'},\n 'properties': {\n '$schema': {'type': 'string', 'index': 'not_analyzed'},\n 'id': {'type': 'string', 'ind...
""" These are utility functions used by the OCCRP datamapper to generate a matching ElasticSearch schema, given a JSON Schema descriptor. """ from jsonmapping.visitor import SchemaVisitor def _generator_field_mapping(visitor): type_name = 'string' if 'number' in visitor.types: type_name = 'float' ...
pudo/jsonmapping
jsonmapping/util.py
validate_mapping
python
def validate_mapping(mapping): file_path = os.path.join(os.path.dirname(__file__), 'schemas', 'mapping.json') with open(file_path, 'r') as fh: validator = Draft4Validator(json.load(fh)) validator.validate(mapping) return mapping
Validate a mapping configuration file against the relevant schema.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/util.py#L7-L14
null
import os import json from jsonschema import Draft4Validator
pudo/jsonmapping
jsonmapping/mapper.py
Mapper.apply
python
def apply(self, data): if self.visitor.is_object: obj = {} if self.visitor.parent is None: obj['$schema'] = self.visitor.path obj_empty = True for child in self.children: empty, value = child.apply(data) if empty and...
Apply the given mapping to ``data``, recursively. The return type is a tuple of a boolean and the resulting data element. The boolean indicates whether any values were mapped in the child nodes of the mapping. It is used to skip optional branches of the object graph.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/mapper.py#L52-L79
[ "def extract_value(mapping, bind, data):\n \"\"\" Given a mapping and JSON schema spec, extract a value from ``data``\n and apply certain transformations to normalize the value. \"\"\"\n columns = mapping.get('columns', [mapping.get('column')])\n values = [data.get(c) for c in columns]\n\n for transf...
class Mapper(object): """ Given a JSON-specified mapping, this class will recursively transform a flat data structure (e.g. a CSV file or database table) into a nested JSON structure as specified by the JSON schema associated with the given mapping. """ def __init__(self, mapping, resolver, visitor...
pudo/jsonmapping
jsonmapping/mapper.py
Mapper.apply_iter
python
def apply_iter(cls, rows, mapping, resolver, scope=None): mapper = cls(mapping, resolver, scope=scope) for row in rows: _, data = mapper.apply(row) yield data
Given an iterable ``rows`` that yield data records, and a ``mapping`` which is to be applied to them, return a tuple of ``data`` (the generated object graph) and ``err``, a validation exception if the resulting data did not match the expected schema.
train
https://github.com/pudo/jsonmapping/blob/4cf0a20a393ba82e00651c6fd39522a67a0155de/jsonmapping/mapper.py#L82-L90
[ "def apply(self, data):\n \"\"\" Apply the given mapping to ``data``, recursively. The return type\n is a tuple of a boolean and the resulting data element. The boolean\n indicates whether any values were mapped in the child nodes of the\n mapping. It is used to skip optional branches of the object grap...
class Mapper(object): """ Given a JSON-specified mapping, this class will recursively transform a flat data structure (e.g. a CSV file or database table) into a nested JSON structure as specified by the JSON schema associated with the given mapping. """ def __init__(self, mapping, resolver, visitor...