Add tier-2 training assemblies
Browse files- .gitattributes +3 -0
- GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz +3 -0
- GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz.fai +17 -0
- GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz.gzi +3 -0
- GCF_018687715.1_C.illinoinensisPawnee_v1/labels.bed.gz +3 -0
- GCF_031755915.1_ASM3175591v1/genome.fa.gz +3 -0
- GCF_031755915.1_ASM3175591v1/genome.fa.gz.fai +14 -0
- GCF_031755915.1_ASM3175591v1/genome.fa.gz.gzi +0 -0
- GCF_031755915.1_ASM3175591v1/labels.bed.gz +3 -0
- GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz +3 -0
- GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz.fai +177 -0
- GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz.gzi +3 -0
- GCF_036884655.1_Cavendish_Baxijiao_AAA/labels.bed.gz +3 -0
- GCF_958298935.1_lpPhrAust1.1/genome.fa.gz +3 -0
- GCF_958298935.1_lpPhrAust1.1/genome.fa.gz.fai +24 -0
- GCF_958298935.1_lpPhrAust1.1/genome.fa.gz.gzi +3 -0
- GCF_958298935.1_lpPhrAust1.1/labels.bed.gz +3 -0
- IRGSP-1.0/genome.fa.gz +3 -0
- IRGSP-1.0/genome.fa.gz.fai +12 -0
- IRGSP-1.0/genome.fa.gz.gzi +0 -0
- IRGSP-1.0/labels.bed.gz +3 -0
- class_counts.json +85 -0
- class_weights.json +15 -15
- reference_curves.csv +21 -0
.gitattributes
CHANGED
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@@ -61,3 +61,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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| 61 |
GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_016808095.1_ASM1680809v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_030704535.1_ASM3070453v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_016808095.1_ASM1680809v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_030704535.1_ASM3070453v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_958298935.1_lpPhrAust1.1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz
ADDED
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GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz.fai
ADDED
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GCF_018687715.1_C.illinoinensisPawnee_v1/genome.fa.gz.gzi
ADDED
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GCF_018687715.1_C.illinoinensisPawnee_v1/labels.bed.gz
ADDED
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size 4056095
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GCF_031755915.1_ASM3175591v1/genome.fa.gz
ADDED
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GCF_031755915.1_ASM3175591v1/genome.fa.gz.fai
ADDED
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GCF_031755915.1_ASM3175591v1/genome.fa.gz.gzi
ADDED
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Binary file (98.1 kB). View file
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GCF_031755915.1_ASM3175591v1/labels.bed.gz
ADDED
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GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz
ADDED
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GCF_036884655.1_Cavendish_Baxijiao_AAA/genome.fa.gz.fai
ADDED
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| 12 |
+
"splice_donor_p0": 2.232413838286931,
|
| 13 |
+
"splice_donor_p1": 2.2527808861642047,
|
| 14 |
+
"splice_donor_p2": 0.8695190774639706,
|
| 15 |
+
"start_codon": 2.1268694162776716,
|
| 16 |
+
"stop_codon": 2.1268694162776716
|
| 17 |
}
|
reference_curves.csv
ADDED
|
@@ -0,0 +1,21 @@
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|
| 1 |
+
source,tokens,val_gene_f1,val_cds_f1
|
| 2 |
+
"full preset, 1x H100 (~50 min)",100139008,0.0,0.0
|
| 3 |
+
"full preset, 1x H100 (~50 min)",200015872,6.164690621351667,12.636238385623354
|
| 4 |
+
"full preset, 1x H100 (~50 min)",300154880,21.48521181158158,18.046800860487963
|
| 5 |
+
"full preset, 1x H100 (~50 min)",400031744,24.349722078521502,25.60567917030285
|
| 6 |
+
"full preset, 1x H100 (~50 min)",500170752,27.35069039990487,24.516703985321328
|
| 7 |
+
"full preset, 1x H100 (~50 min)",600047616,35.51197933885465,34.982382303437305
|
| 8 |
+
"full preset, 1x H100 (~50 min)",700186624,36.062172194422246,44.39337034485389
|
| 9 |
+
"full preset, 1x H100 (~50 min)",800063488,36.358242188455804,41.7198590366458
|
| 10 |
+
"full preset, 1x H100 (~50 min)",900202496,33.97361107951998,44.03810379566441
|
| 11 |
+
"full preset, 1x H100 (~50 min)",999817216,37.11196785533312,45.849103435166924
|
| 12 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",100002693120,70.44890414891415,90.49042448196676
|
| 13 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",200005386240,74.98977134732324,92.30285878166312
|
| 14 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",300008079360,75.8737837756621,92.64432143924344
|
| 15 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",400010772480,74.83126843922804,92.26302676452372
|
| 16 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",500013465600,75.34592819604107,92.4442318184102
|
| 17 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",600016158720,75.12319488384372,92.311518368352
|
| 18 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",700018851840,76.14052455574125,92.64642296431656
|
| 19 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",800021544960,75.92397357153311,92.62031607328603
|
| 20 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",900024238080,76.23202936994943,92.65944043685262
|
| 21 |
+
"NTv3_annot_plants (released), 2-4x H100, ~680 GPU-h",920024776704,76.42119594163564,92.72100456867798
|