RipBench / tooling /eval /evaluate_classification.py
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#!/usr/bin/env python3
"""RipBench binary classification evaluator (framework-agnostic).
HOW TO USE (no CLI args - edit CONFIG below, then: python evaluate_classification.py)
1. Point PRED_DIR at a predictions/ folder (predict_ultralytics.py writes
one next to the checkpoints) of <stem>_preds_val.json / <stem>_preds_test.json
files (created by predict_ultralytics.py; each is a dict
{image basename: P(rip)}). Only stems containing _cls_ are evaluated -
a mixed folder is fine. Single model: PRED_DIR=None + PRED_VAL/PRED_TEST.
2. Run (numpy only). One TSV row per model x split appends to
eval/results/classification_eval.tsv (Sheets-ready).
PROTOCOL: the P(rip) decision threshold is selected PER MODEL on val (best
F2; rip = positive class - missing a rip is the costly error), frozen,
applied to test. Test-only: USE_VAL_SELECTION=False + FIXED_THRESHOLD.
AUROC and AP are threshold-free (computed from raw probabilities).
"""
import json
import os
_RIPBENCH_ROOT = os.environ.get("RIPBENCH_ROOT", os.path.normpath(os.path.join(os.path.dirname(os.path.abspath(__file__)), "..", ".."))) # release root (env RIPBENCH_ROOT overrides)
from datetime import datetime
import numpy as np
# --- configuration -----------------------------------------------------------
DATASET_ROOT = _RIPBENCH_ROOT
# EITHER a folder of prediction files (batch mode) ...
PRED_DIR = "/path/to/best_models/predictions" # None -> use the single pair below
TASK_TOKEN = "_cls_" # stems must contain this; "" = take every pair in PRED_DIR
# ... OR a single pair:
PRED_VAL = "/path/to/<model>_preds_val.json" # ignored if USE_VAL_SELECTION = False
PRED_TEST = "/path/to/<model>_preds_test.json"
USE_VAL_SELECTION = True
FIXED_THRESHOLD = 0.5 # used only when USE_VAL_SELECTION = False
THRESHOLD_SWEEP = [round(x / 100, 2) for x in range(1, 96)] # 0.01..0.95 step 0.01 (same grid as detection)
MODEL_TAG = None # None = derived from PRED_TEST filename
OUT_TSV = os.path.join(os.path.dirname(os.path.abspath(__file__)), "results", "classification_eval.tsv")
# ------------------------------------------------------------------------------
HEADER = ("timestamp\tmodel\ttask\tsplit\tselected_thr\tselected_on"
"\tn_images\tn_rip\tn_no_rip\tAUROC\tAP"
"\taccuracy\tP\tR\tF1\tF2\tspecificity\tTP\tFP\tFN\tTN\n")
def f_beta(p, r, beta):
denom = beta * beta * p + r
return (1 + beta * beta) * p * r / denom if denom > 0 else 0.0
def load_gt(split):
path = os.path.join(DATASET_ROOT, "labels", "classification", f"{split}.txt")
gt = {}
for line in open(path).read().splitlines():
if not line:
continue
image_rel, label = line.rsplit(" ", 1)
gt[os.path.basename(image_rel)] = int(label)
return gt
def load_preds(path, gt):
with open(path) as f:
preds = json.load(f)
assert isinstance(preds, dict), f"{path}: expected dict basename -> P(rip)"
missing = set(gt) - set(preds)
assert not missing, f"{path}: predictions missing for {len(missing)} GT images, e.g. {sorted(missing)[:3]}"
y = np.array([gt[k] for k in sorted(gt)], dtype=int)
s = np.array([float(preds[k]) for k in sorted(gt)], dtype=float)
return y, s
def counts_at(y, s, thr):
pred = s >= thr
tp = int(((pred == 1) & (y == 1)).sum())
fp = int(((pred == 1) & (y == 0)).sum())
fn = int(((pred == 0) & (y == 1)).sum())
tn = int(((pred == 0) & (y == 0)).sum())
return tp, fp, fn, tn
def metrics_at(y, s, thr):
tp, fp, fn, tn = counts_at(y, s, thr)
p = tp / (tp + fp) if tp + fp else 0.0
r = tp / (tp + fn) if tp + fn else 0.0
return {"TP": tp, "FP": fp, "FN": fn, "TN": tn, "P": p, "R": r,
"F1": f_beta(p, r, 1.0), "F2": f_beta(p, r, 2.0),
"acc": (tp + tn) / len(y), "spec": tn / (tn + fp) if tn + fp else 0.0}
def auroc(y, s):
"""Rank-based AUROC (equals Mann-Whitney U / (n_pos * n_neg)); ties get
average ranks."""
n_pos, n_neg = int((y == 1).sum()), int((y == 0).sum())
if n_pos == 0 or n_neg == 0:
return float("nan")
order = np.argsort(s, kind="mergesort")
ranks = np.empty(len(s), dtype=float)
sorted_s = s[order]
i = 0
while i < len(s):
j = i
while j + 1 < len(s) and sorted_s[j + 1] == sorted_s[i]:
j += 1
ranks[order[i:j + 1]] = (i + j) / 2 + 1 # average rank, 1-based
i = j + 1
return float((ranks[y == 1].sum() - n_pos * (n_pos + 1) / 2) / (n_pos * n_neg))
def average_precision(y, s):
"""Step-wise area under the precision-recall curve."""
order = np.argsort(-s, kind="mergesort")
y_sorted = y[order]
tp_cum = np.cumsum(y_sorted)
n_pos = int((y == 1).sum())
if n_pos == 0:
return float("nan")
precision = tp_cum / np.arange(1, len(y) + 1)
recall = tp_cum / n_pos
# sum precision at each new TP (step integration)
return float(precision[y_sorted == 1].sum() / n_pos)
def append_row(row):
os.makedirs(os.path.dirname(OUT_TSV), exist_ok=True)
write_header = not os.path.isfile(OUT_TSV)
with open(OUT_TSV, "a") as f:
if write_header:
f.write(HEADER)
f.write("\t".join(str(x) for x in row) + "\n")
def make_row(model, split, thr, selected_on, y, s):
m = metrics_at(y, s, thr)
return [datetime.now().strftime("%Y-%m-%d %H:%M"), model, "classification", split,
f"{thr:.2f}", selected_on, len(y), int((y == 1).sum()), int((y == 0).sum()),
f"{auroc(y, s):.6f}", f"{average_precision(y, s):.6f}",
f"{m['acc']:.6f}", f"{m['P']:.6f}", f"{m['R']:.6f}",
f"{m['F1']:.6f}", f"{m['F2']:.6f}", f"{m['spec']:.6f}",
m["TP"], m["FP"], m["FN"], m["TN"]]
def evaluate_pair(gt_val, gt_test, pred_val, pred_test, model):
if USE_VAL_SELECTION:
y_v, s_v = load_preds(pred_val, gt_val)
sweep = [(t, metrics_at(y_v, s_v, t)) for t in THRESHOLD_SWEEP]
best_thr, _ = max(sweep, key=lambda x: (x[1]["F2"], x[1]["R"], x[1]["P"], x[0]))
selected_on = "val"
print(f"[val] {model}: selected threshold={best_thr:.2f}")
append_row(make_row(model, "val", best_thr, selected_on, y_v, s_v))
else:
best_thr = FIXED_THRESHOLD
selected_on = "fixed"
y_t, s_t = load_preds(pred_test, gt_test)
append_row(make_row(model, "test", best_thr, selected_on, y_t, s_t))
m = metrics_at(y_t, s_t, best_thr)
print(f"[test] {model}: thr={best_thr:.2f} ({selected_on}) acc={m['acc']:.4f} "
f"P={m['P']:.4f} R={m['R']:.4f} F2={m['F2']:.4f} "
f"TP/FP/FN/TN={m['TP']}/{m['FP']}/{m['FN']}/{m['TN']} "
f"AUROC={auroc(y_t, s_t):.4f}\n")
def discover_pairs(pred_dir):
for f in sorted(os.listdir(pred_dir)):
if not f.endswith("_preds_test.json"):
continue
stem = f[: -len("_preds_test.json")]
if TASK_TOKEN and TASK_TOKEN not in stem:
continue
val = os.path.join(pred_dir, stem + "_preds_val.json")
yield stem, (val if os.path.isfile(val) else None), os.path.join(pred_dir, f)
def main():
gt_val = load_gt("val") if USE_VAL_SELECTION else None
gt_test = load_gt("test")
if PRED_DIR:
pairs = list(discover_pairs(PRED_DIR))
print(f"batch mode: {len(pairs)} model(s) in {PRED_DIR}\n")
failed = []
for stem, pred_val, pred_test in pairs:
if USE_VAL_SELECTION and pred_val is None:
print(f"SKIP {stem}: no _preds_val.json (needed for threshold selection)")
continue
try:
evaluate_pair(gt_val, gt_test, pred_val, pred_test, stem)
except Exception as e: # keep the batch going
failed.append((stem, repr(e)))
print(f"ERROR {stem}: {e!r}")
print(f"done: {len(pairs) - len(failed)}/{len(pairs)} ok -> {OUT_TSV}")
for stem, err in failed:
print(f" FAILED {stem}: {err}")
else:
model = MODEL_TAG or os.path.splitext(os.path.basename(PRED_TEST))[0]
evaluate_pair(gt_val, gt_test, PRED_VAL, PRED_TEST, model)
print(f"rows appended to {OUT_TSV}")
if __name__ == "__main__":
main()