repo stringlengths 5 51 | instance_id stringlengths 11 56 | base_commit stringlengths 40 40 | fixed_commit stringclasses 20
values | patch stringlengths 400 56.6k | test_patch stringlengths 0 895k | problem_statement stringlengths 27 55.6k | hints_text stringlengths 0 72k | created_at int64 1,447B 1,739B | labels listlengths 0 7 ⌀ | category stringclasses 4
values | edit_functions listlengths 1 10 | added_functions listlengths 0 19 | edit_functions_length int64 1 10 | __index_level_0__ int64 1 659 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UXARRAY/uxarray | UXARRAY__uxarray-1117 | fe4cae1311db7fb21187b505e06018334a015c48 | null | diff --git a/uxarray/grid/connectivity.py b/uxarray/grid/connectivity.py
index 78e936117..54bd1017e 100644
--- a/uxarray/grid/connectivity.py
+++ b/uxarray/grid/connectivity.py
@@ -146,13 +146,14 @@ def _build_n_nodes_per_face(face_nodes, n_face, n_max_face_nodes):
"""Constructs ``n_nodes_per_face``, which contain... | Optimize Face Centroid Calculations
If `Grid.face_lon` does not exist, `_populate_face_centroids()`, actually `_construct_face_centroids()` in it, takes extremely long for large datasets. For instance, the benchmark/profiling below is for a ~4GB SCREAM dataset, around 5 mins:
@rajeeja FYI: I'm already working on this ... | 1,734,798,627,000 | [
"run-benchmark"
] | Performance Issue | [
"uxarray/grid/connectivity.py:_build_n_nodes_per_face",
"uxarray/grid/coordinates.py:_construct_face_centroids"
] | [] | 2 | 1 | ||
ultralytics/ultralytics | ultralytics__ultralytics-17810 | d8c43874ae830a36d2adeac4a44a8ce5697e972c | null | diff --git a/ultralytics/utils/ops.py b/ultralytics/utils/ops.py
index 25e83c61c3a..ac53546ed1b 100644
--- a/ultralytics/utils/ops.py
+++ b/ultralytics/utils/ops.py
@@ -75,9 +75,8 @@ def segment2box(segment, width=640, height=640):
(np.ndarray): the minimum and maximum x and y values of the segment.
"""
... | Training labels not applied properly to training data
### Search before asking
- [X] I have searched the Ultralytics YOLO [issues](https://github.com/ultralytics/ultralytics/issues) and found no similar bug report.
### Ultralytics YOLO Component
Train
### Bug
# Bug
Labels are not included in the gener... | 👋 Hello @TheOfficialOzone, thank you for bringing this to our attention 🚀! We understand that you're encountering an issue with labels not being applied correctly during the training of a segmentation model on the Ultralytics repository.
For us to assist you effectively, please ensure that you've provided a [minimum... | 1,732,632,265,000 | [
"enhancement",
"segment"
] | Bug Report | [
"ultralytics/utils/ops.py:segment2box"
] | [] | 1 | 4 | |
Chainlit/chainlit | Chainlit__chainlit-1575 | 8b2d4bacfd4fa2c8af72e2d140d527d20125b07b | null | diff --git a/backend/chainlit/config.py b/backend/chainlit/config.py
index b90f162f07..18ee6be8db 100644
--- a/backend/chainlit/config.py
+++ b/backend/chainlit/config.py
@@ -311,6 +311,8 @@ class CodeSettings:
@dataclass()
class ProjectSettings(DataClassJsonMixin):
allow_origins: List[str] = Field(default_facto... | diff --git a/cypress/e2e/copilot/.chainlit/config.toml b/cypress/e2e/copilot/.chainlit/config.toml
index e2a93af08f..9c42755715 100644
--- a/cypress/e2e/copilot/.chainlit/config.toml
+++ b/cypress/e2e/copilot/.chainlit/config.toml
@@ -13,7 +13,7 @@ session_timeout = 3600
cache = false
# Authorized origins
-allow_or... | Security: allowed origins should not be * by default
CORS headers should be restricted to the current domain at least, by default.
| @dosu Where do we have to look in the settings/code to set this to a sensible/safe default value?
<!-- Answer -->
To set the allowed origins for CORS headers to a sensible/safe default value, you need to look at the `allow_origins` setting in the `config.toml` file.
```toml
# Authorized origins
allow_origins = ["*"]
`... | 1,733,733,602,000 | [
"size:M"
] | Security Vulnerability | [
"backend/chainlit/server.py:get_html_template",
"backend/chainlit/socket.py:build_anon_user_identifier",
"backend/chainlit/socket.py:connect",
"backend/chainlit/socket.py:connection_successful",
"backend/chainlit/socket.py:window_message"
] | [] | 5 | 5 |
huggingface/transformers | huggingface__transformers-22496 | 41d47db90fbe9937c0941f2f9cdb2ddd83e49a2e | null | diff --git a/src/transformers/models/whisper/modeling_whisper.py b/src/transformers/models/whisper/modeling_whisper.py
index 91de6810b17e..96f91a0a43dd 100644
--- a/src/transformers/models/whisper/modeling_whisper.py
+++ b/src/transformers/models/whisper/modeling_whisper.py
@@ -34,7 +34,12 @@
SequenceClassifierOut... | diff --git a/tests/models/whisper/test_modeling_whisper.py b/tests/models/whisper/test_modeling_whisper.py
index 883a2021b9bb..98bbbb3214a7 100644
--- a/tests/models/whisper/test_modeling_whisper.py
+++ b/tests/models/whisper/test_modeling_whisper.py
@@ -1013,6 +1013,48 @@ def test_mask_time_prob(self):
en... | Whisper Prompting
### Feature request
Add prompting for the Whisper model to control the style/formatting of the generated text.
### Motivation
During training, Whisper can be fed a "previous context window" to condition on longer passages of text.
The original OpenAI Whisper implementation provides the use... | cc @hollance
Hello, I'd like to pick up this issue! | 1,680,278,096,000 | [] | Feature Request | [
"src/transformers/models/whisper/modeling_whisper.py:WhisperForConditionalGeneration.generate",
"src/transformers/models/whisper/tokenization_whisper.py:WhisperTokenizer._decode",
"src/transformers/models/whisper/tokenization_whisper_fast.py:WhisperTokenizerFast._decode"
] | [
"src/transformers/models/whisper/processing_whisper.py:WhisperProcessor.get_prompt_ids",
"src/transformers/models/whisper/tokenization_whisper.py:WhisperTokenizer.get_prompt_ids",
"src/transformers/models/whisper/tokenization_whisper.py:WhisperTokenizer._strip_prompt",
"src/transformers/models/whisper/tokeniz... | 3 | 8 |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-24145 | 55af30d981ea2f72346ff93602f0b3b740cfe8d6 | e5c65906ee7fdab81c2950fab0fe4d04ed7ad522 | diff --git a/doc/whats_new/v1.3.rst b/doc/whats_new/v1.3.rst
index 9cab0db995c5d..ec1301844b877 100644
--- a/doc/whats_new/v1.3.rst
+++ b/doc/whats_new/v1.3.rst
@@ -487,6 +487,11 @@ Changelog
categorical encoding based on target mean conditioned on the value of the
category. :pr:`25334` by `Thomas Fan`_.
+- |En... | diff --git a/sklearn/preprocessing/tests/test_polynomial.py b/sklearn/preprocessing/tests/test_polynomial.py
index 727b31b793b1d..1062a3da820e7 100644
--- a/sklearn/preprocessing/tests/test_polynomial.py
+++ b/sklearn/preprocessing/tests/test_polynomial.py
@@ -35,6 +35,22 @@ def is_c_contiguous(a):
assert np.isfor... | Add sparse matrix output to SplineTransformer
### Describe the workflow you want to enable
As B-splines naturally have a sparse structure, I'd like to have the option that `SplineTransformer` returns a sparse matrix instead of always an ndarray.
```python
import numpy as np
from sklearn.preprocessing import SplineT... | 1,659,969,522,000 | [
"module:preprocessing"
] | Feature Request | [
"sklearn/preprocessing/_polynomial.py:SplineTransformer.__init__",
"sklearn/preprocessing/_polynomial.py:SplineTransformer.fit",
"sklearn/preprocessing/_polynomial.py:SplineTransformer.transform"
] | [] | 3 | 9 | |
avantifellows/quiz-backend | avantifellows__quiz-backend-84 | f970b54634a9a9ba000aaf76d05338a5d77b0d60 | null | diff --git a/app/models.py b/app/models.py
index cfb9644b..80f94b94 100644
--- a/app/models.py
+++ b/app/models.py
@@ -365,6 +365,11 @@ class Config:
schema_extra = {"example": {"answer": [0, 1, 2], "visited": True}}
+"""
+Note : The below model is not being used currently anywhere
+"""
+
+
class SessionA... | diff --git a/app/tests/test_session_answers.py b/app/tests/test_session_answers.py
index a2c04a1e..2d05a9be 100644
--- a/app/tests/test_session_answers.py
+++ b/app/tests/test_session_answers.py
@@ -7,12 +7,13 @@ class SessionAnswerTestCase(SessionsBaseTestCase):
def setUp(self):
super().setUp()
... | At some places we're updating just one key of an object or one element of an array but we send the whole object to MongoDB to update which is inefficient.
| 1,680,002,295,000 | [] | Performance Issue | [
"app/routers/session_answers.py:update_session_answer",
"app/routers/session_answers.py:get_session_answer",
"app/routers/sessions.py:create_session",
"app/routers/sessions.py:update_session"
] | [
"app/routers/session_answers.py:update_session_answer_in_a_session",
"app/routers/session_answers.py:get_session_answer_from_a_session"
] | 4 | 11 | |
internetarchive/openlibrary | internetarchive__openlibrary-7929 | dc49fddb78a3cb25138922790ddd6a5dd2b5741c | null | diff --git a/openlibrary/core/lending.py b/openlibrary/core/lending.py
index 6162ed5b081..d7e2a1949cb 100644
--- a/openlibrary/core/lending.py
+++ b/openlibrary/core/lending.py
@@ -511,13 +511,53 @@ def _get_ia_loan(identifier, userid):
def get_loans_of_user(user_key):
"""TODO: Remove inclusion of local data; s... | Cache Patron's Active Loans
<!-- A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] -->
On several pages (e.g. LoanStatus) we fetch the patron's active loans (which can be expensive) to see if they've borrowed a book (e.g. on the book page).
Ideally, we'd cache this every... | 1,685,797,378,000 | [
"Priority: 1",
"Needs: Patch Deploy"
] | Performance Issue | [
"openlibrary/core/lending.py:get_loans_of_user",
"openlibrary/core/models.py:User.get_loan_for",
"openlibrary/core/models.py:User.get_waiting_loan_for",
"openlibrary/plugins/upstream/borrow.py:borrow.POST"
] | [
"openlibrary/core/lending.py:get_user_waiting_loans",
"openlibrary/core/models.py:User.get_user_waiting_loans"
] | 4 | 13 | ||
rwth-i6/sisyphus | rwth-i6__sisyphus-191 | a5ddfaa5257beafb5fdce28d96e6ae1e574ee9fe | null | diff --git a/sisyphus/aws_batch_engine.py b/sisyphus/aws_batch_engine.py
index 4b0173f..80f454e 100644
--- a/sisyphus/aws_batch_engine.py
+++ b/sisyphus/aws_batch_engine.py
@@ -1,4 +1,4 @@
-""" This is an experimental implementation for the aws batch engine.
+"""This is an experimental implementation for the aws batch ... | Too many open file descriptors
Hi, I was using sisyphus today for a big recipe and I got an error in my worker which claimed `too many open files`:
```
OSError: [Errno 24] Unable to synchronously open file (unable to open file: name = <filename>, errno = 24, error message = 'Too many open files', flags = 0, o_flags... | I had this happen again. It was with a relatively big setup, but I'm not sure what causes the issue yet since my manager shouldn't be opening many files, if any. Please find attached the corresponding stack trace from the manager
[here](https://github.com/user-attachments/files/15509563/manager_too_many_open_files_gi... | 1,717,145,069,000 | [] | Performance Issue | [
"sisyphus/aws_batch_engine.py:AWSBatchEngine.system_call",
"sisyphus/load_sharing_facility_engine.py:LoadSharingFacilityEngine.system_call",
"sisyphus/simple_linux_utility_for_resource_management_engine.py:SimpleLinuxUtilityForResourceManagementEngine.system_call",
"sisyphus/son_of_grid_engine.py:SonOfGridEng... | [] | 4 | 14 | |
sympy/sympy | sympy__sympy-27223 | d293133e81194adc11177729af91c970f092a6e7 | null | diff --git a/sympy/utilities/lambdify.py b/sympy/utilities/lambdify.py
index a84d1a1c26c1..518f5cb67bf5 100644
--- a/sympy/utilities/lambdify.py
+++ b/sympy/utilities/lambdify.py
@@ -11,6 +11,7 @@
import keyword
import textwrap
import linecache
+import weakref
# Required despite static analysis claiming it is not... | diff --git a/sympy/utilities/tests/test_lambdify.py b/sympy/utilities/tests/test_lambdify.py
index 4a82290569ea..428cbaed92b6 100644
--- a/sympy/utilities/tests/test_lambdify.py
+++ b/sympy/utilities/tests/test_lambdify.py
@@ -1,6 +1,8 @@
from itertools import product
import math
import inspect
+import linecache
+im... | Memory Leak in `sympy.lambdify`
Hi there,
I'm working with an [algorithm](https://github.com/SymposiumOrganization/NeuralSymbolicRegressionThatScales) that relies on calling `sympy.lambdify` hundreds of millions of times (~200M) and noticed the memory usage of the process steadily creeping up and eventually crashing t... | > The memory usage increases by about +390KB per lambdified equation
I assume you mean per 10000 lambdified equations so it is about 400 bytes per lambdified equation.
My guess is that each call to lambdify creates a Dummy and then something creates a polynomial ring with that dummy and the polynomial ring never gets ... | 1,730,837,688,000 | [
"utilities.lambdify"
] | Bug Report | [
"sympy/utilities/lambdify.py:lambdify"
] | [] | 1 | 16 |
modin-project/modin | modin-project__modin-6836 | 097ea527c8e3f099e1f252b067a1d5eb055ad0b5 | null | diff --git a/modin/core/dataframe/algebra/binary.py b/modin/core/dataframe/algebra/binary.py
index f19040cc104..af0c6ee7e8e 100644
--- a/modin/core/dataframe/algebra/binary.py
+++ b/modin/core/dataframe/algebra/binary.py
@@ -415,7 +415,9 @@ def caller(
):
shape_hint = "colu... | FEAT: Do not put binary functions to the Ray storage multiple times.
Currently, the binary operations are wrapped into lambdas which are put into the Ray storage on each operation.
| 1,703,167,333,000 | [] | Feature Request | [
"modin/core/dataframe/algebra/binary.py:Binary.register",
"modin/core/dataframe/pandas/dataframe/dataframe.py:PandasDataframe.map",
"modin/core/dataframe/pandas/partitioning/partition_manager.py:PandasDataframePartitionManager.map_partitions",
"modin/core/dataframe/pandas/partitioning/partition_manager.py:Pan... | [] | 5 | 17 | ||
Open-MSS/MSS | Open-MSS__MSS-1967 | 56e9528b552a9d8f2e267661473b8f0e724fd093 | null | diff --git a/.github/workflows/python-flake8.yml b/.github/workflows/python-flake8.yml
index b578708e4..0e9003135 100644
--- a/.github/workflows/python-flake8.yml
+++ b/.github/workflows/python-flake8.yml
@@ -19,10 +19,10 @@ jobs:
timeout-minutes: 10
steps:
- uses: actions/checkout@v3
- - name: Set up... | diff --git a/conftest.py b/conftest.py
index be546d782..83f33ca85 100644
--- a/conftest.py
+++ b/conftest.py
@@ -211,9 +211,8 @@ def _load_module(module_name, path):
@pytest.fixture(autouse=True)
-def close_open_windows():
- """
- Closes all windows after every test
+def fail_if_open_message_boxes_left():
+ ... | What to do with "UserWarning: An unhandled message box popped up during your test!"?
There are many of these warnings in the CI logs basically spamming the output and drowning out other more interesting warnings.
These warnings are originating from https://github.com/Open-MSS/MSS/blob/1327ede1dbe3f4eb26bf3889934fa76... | see here, the warning comes from the fixture
https://github.com/Open-MSS/MSS/blob/develop/conftest.py#L214
tests better should fail instead of hiding one cause, some of the tests showing that have to do a second turn.
Sometimes functionality gets added but not the test improved e.g.
```
call(<mslib.msui.msc... | 1,693,392,061,000 | [] | Performance Issue | [
"mslib/msui/mscolab.py:MSUIMscolab.add_operation",
"mslib/msui/mscolab.py:MSUIMscolab.change_category_handler",
"mslib/msui/mscolab.py:MSUIMscolab.change_description_handler",
"mslib/msui/mscolab.py:MSUIMscolab.rename_operation_handler",
"mslib/msui/mscolab.py:MSUIMscolab.logout",
"mslib/msui/socket_contr... | [] | 7 | 18 |
vllm-project/vllm | vllm-project__vllm-5473 | 7d19de2e9c9a94658c36b55011b803a7991d0335 | null | diff --git a/vllm/config.py b/vllm/config.py
index 2513d43ce8e6b..a0bd6b0975a16 100644
--- a/vllm/config.py
+++ b/vllm/config.py
@@ -11,7 +11,8 @@
from vllm.model_executor.layers.quantization import QUANTIZATION_METHODS
from vllm.model_executor.models import ModelRegistry
from vllm.transformers_utils.config import g... | diff --git a/.buildkite/test-pipeline.yaml b/.buildkite/test-pipeline.yaml
index 6b12d19ba611f..6a2932db9f2dc 100644
--- a/.buildkite/test-pipeline.yaml
+++ b/.buildkite/test-pipeline.yaml
@@ -48,6 +48,7 @@ steps:
- TEST_DIST_MODEL=meta-llama/Llama-2-7b-hf DISTRIBUTED_EXECUTOR_BACKEND=mp pytest -v -s distributed/tes... | [Usage]: Is it possible to start 8 tp=1 LLMEngine on a 8-GPU machine?
### Your current environment
```text
Collecting environment information...
/home/corvo/.local/lib/python3.10/site-packages/transformers/utils/hub.py:124: FutureWarning: Using `TRANSFORMERS_CACHE` is deprecated and will be removed in v5 of Transfor... | Hi @sfc-gh-zhwang, I don't think this is easily doable in vLLM at the moment within a single python process. Possibly you could construct each model on GPU 0 and move each to GPU X before moving on.
I would recommend starting a separate process for each LLM and specifying `CUDA_VISIBLE_DEVICES` for each i.e. `CUDA_VI... | 1,718,233,771,000 | [] | Feature Request | [
"vllm/config.py:ParallelConfig.__init__",
"vllm/distributed/device_communicators/custom_all_reduce.py:CustomAllreduce.__init__",
"vllm/distributed/device_communicators/custom_all_reduce_utils.py:gpu_p2p_access_check",
"vllm/executor/multiproc_gpu_executor.py:MultiprocessingGPUExecutor._init_executor"
] | [
"vllm/utils.py:_cuda_device_count_stateless",
"vllm/utils.py:cuda_device_count_stateless"
] | 4 | 19 |
tardis-sn/tardis | tardis-sn__tardis-2782 | e1aa88723a6836e8a25cc1afb24b578b1b78651f | null | diff --git a/benchmarks/opacities_opacity.py b/benchmarks/opacities_opacity.py
index 5352ceccc89..7589632aabd 100644
--- a/benchmarks/opacities_opacity.py
+++ b/benchmarks/opacities_opacity.py
@@ -28,7 +28,7 @@ def time_photoabsorption_opacity_calculation(self):
)
def time_pair_creation_opacity_calculat... | No need to need benchmarks for different values of length for generate_rpacket_last_interaction_tracker_list.
@officialasishkumar Currently the said benchmark runs for different values of length, which is not required.
The related code:
https://github.com/tardis-sn/tardis/blob/e1aa88723a6836e8a25cc1afb24b578b1b78651f... | Yeah it can be removed and the repeat can be set to 3 or 4 for better accuracy. | 1,722,951,264,000 | [
"benchmarks"
] | Performance Issue | [
"benchmarks/opacities_opacity.py:BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation",
"benchmarks/transport_montecarlo_packet_trackers.py:BenchmarkTransportMontecarloPacketTrackers.setup",
"benchmarks/transport_montecarlo_packet_trackers.py:BenchmarkTransportMontecarloPacketTrack... | [] | 5 | 20 | |
sopel-irc/sopel | sopel-irc__sopel-2285 | 51300a1ab854d6ec82d90df1bc876188c03335ff | null | diff --git a/pyproject.toml b/pyproject.toml
index 5746b069a..60bac8dd7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -47,7 +47,6 @@ dependencies = [
"xmltodict>=0.12,<0.14",
"pytz",
"requests>=2.24.0,<3.0.0",
- "dnspython<3.0",
"sqlalchemy>=1.4,<1.5",
"importlib_metadata>=3.6",
"... | diff --git a/test/builtins/test_builtins_url.py b/test/builtins/test_builtins_url.py
index 54db06f24..eedce5411 100644
--- a/test/builtins/test_builtins_url.py
+++ b/test/builtins/test_builtins_url.py
@@ -22,6 +22,12 @@
"http://example..com/", # empty label
"http://?", # no host
)
+PRIVATE_URLS = (
+ # ... | url: private_resolution/dns_resolution useless
### Description
The url.enable_private_resolution and url.enable_dns_resolution settings do not work as advertised, and the concept of the latter is fatally flawed.
The current `url.py` private-address protection logic is as follows:
```python
if not enable_private_r... | 1,653,509,364,000 | [
"Bugfix",
"Security"
] | Security Vulnerability | [
"sopel/builtins/url.py:configure",
"sopel/builtins/url.py:title_command",
"sopel/builtins/url.py:title_auto",
"sopel/builtins/url.py:process_urls",
"sopel/builtins/url.py:find_title",
"sopel/builtins/url.py:get_tinyurl"
] | [] | 6 | 23 | |
mesonbuild/meson | mesonbuild__meson-11366 | 088727164de8496c4bada040c2f4690e42f66b69 | null | diff --git a/docs/markdown/Installing.md b/docs/markdown/Installing.md
index a692afe7deea..2d18c178fccd 100644
--- a/docs/markdown/Installing.md
+++ b/docs/markdown/Installing.md
@@ -102,6 +102,22 @@ Telling Meson to run this script at install time is a one-liner.
The argument is the name of the script file relative t... | 'ninja install' attempts to gain elevated privileges
It is disturbing for 'ninja install' to prompt for a sudo password with polkit.
This breaks user expectations, and introduces a security risk.
This has evidently been meson's behavior for a very long time, but it's distressing, and it's surprising because meson... | What system are you using? Asking because it helps use determine how to fix this. Also would help to say what version of Meson and Ninja you’re using.
This is on Linux (ubuntu 20.04), and using meson from either the system or up-to-date git.
It's not a bug; it's a feature. It just happens to be a feature that gives... | 1,675,834,691,000 | [] | Security Vulnerability | [
"mesonbuild/minstall.py:Installer.do_install",
"mesonbuild/minstall.py:rebuild_all"
] | [] | 2 | 24 | |
dmlc/dgl | dmlc__dgl-5240 | f0b7cc96bd679eba40632a0383535e7a9d3295c5 | null | diff --git a/python/dgl/frame.py b/python/dgl/frame.py
index 46c52a20a99b..707964c5abc6 100644
--- a/python/dgl/frame.py
+++ b/python/dgl/frame.py
@@ -5,7 +5,7 @@
from collections.abc import MutableMapping
from . import backend as F
-from .base import DGLError, dgl_warning
+from .base import dgl_warning, DGLError
... | [Bug][Performance] Significant overhead when `record_stream` for subgraph in dataloading
## 🐛 Bug
It seems there are many overheads observed in dataloader during feature prefetching when `use_alternate_streams=True` . When it calls `_record_stream` for every subgraph (batch), like the following:
https://github.co... | 1,675,111,529,000 | [] | Performance Issue | [
"python/dgl/frame.py:Column.record_stream"
] | [
"python/dgl/frame.py:_LazyIndex.record_stream"
] | 1 | 25 | ||
pypa/pip | pypa__pip-13085 | fe0925b3c00bf8956a0d33408df692ac364217d4 | null | diff --git a/news/13079.bugfix.rst b/news/13079.bugfix.rst
new file mode 100644
index 00000000000..5b297f5a12e
--- /dev/null
+++ b/news/13079.bugfix.rst
@@ -0,0 +1,1 @@
+This change fixes a security bug allowing a wheel to execute code during installation.
diff --git a/src/pip/_internal/commands/install.py b/src/pip/_i... | Lazy import allows wheel to execute code on install.
### Description
Versions of pip since 24.1b1 allow someone to run arbitrary code after a specially crafted bdist whl file is installed.
When installing wheel files pip does not constrain the directories the wheel contents are written into, except for checks t... | Just a couple more additions:
- this behavior is related to `pip` installing into the same location that `pip` is running from
- this may have security implications based on the usage of `pip` by users. For example, `pip install --only-binary :all:` could be used in a trusted context, before using the installed p... | 1,731,971,313,000 | [
"bot:chronographer:provided"
] | Security Vulnerability | [
"src/pip/_internal/commands/install.py:InstallCommand.run"
] | [] | 1 | 27 | |
gammasim/simtools | gammasim__simtools-1183 | 5dcc802561e21122783af829aede24c0a411b4a2 | null | diff --git a/simtools/applications/db_get_parameter_from_db.py b/simtools/applications/db_get_parameter_from_db.py
index 259f7689f..ff4f407fd 100644
--- a/simtools/applications/db_get_parameter_from_db.py
+++ b/simtools/applications/db_get_parameter_from_db.py
@@ -85,8 +85,11 @@ def main(): # noqa: D103
db = db_h... | diff --git a/tests/unit_tests/db/test_db_array_elements.py b/tests/unit_tests/db/test_db_array_elements.py
index 2a1bc5570..dcc693abf 100644
--- a/tests/unit_tests/db/test_db_array_elements.py
+++ b/tests/unit_tests/db/test_db_array_elements.py
@@ -1,14 +1,28 @@
#!/usr/bin/python3
+import time
+
import pytest
fr... | test_get_corsika_telescope_list takes too long
The `test_get_corsika_telescope_list` test takes roughly 20 seconds to run. Profiling it points to excessive time spent initializing the array model, perhaps related to reading from the DB too many times.
```
ncalls tottime percall cumtime percall filename:lineno... | The `array_model` consist of the site model, the model of all telescopes and of all calibration devices. So this is naturally that all DB calls are initiated from the array_model_class.
The number of calls to the DB are reduced by having the `DatabaseHandler.*cached` dicts, where the idea is to not query the same pa... | 1,727,870,821,000 | [] | Performance Issue | [
"simtools/applications/db_get_parameter_from_db.py:main",
"simtools/db/db_array_elements.py:get_array_elements",
"simtools/db/db_array_elements.py:get_array_element_list_for_db_query",
"simtools/db/db_array_elements.py:get_array_elements_of_type",
"simtools/db/db_handler.py:DatabaseHandler.get_model_paramet... | [] | 8 | 28 |
matplotlib/matplotlib | matplotlib__matplotlib-25887 | 09eab5b1c471410d238b449ebbac63f70759fc21 | null | diff --git a/lib/matplotlib/cbook.py b/lib/matplotlib/cbook.py
index ff6b2a15ec35..9d03752c666c 100644
--- a/lib/matplotlib/cbook.py
+++ b/lib/matplotlib/cbook.py
@@ -2344,6 +2344,30 @@ def _picklable_class_constructor(mixin_class, fmt, attr_name, base_class):
return cls.__new__(cls)
+def _is_torch_array(x):
+... | diff --git a/lib/matplotlib/tests/test_cbook.py b/lib/matplotlib/tests/test_cbook.py
index 1f4f96324e9e..24fd02e65a5f 100644
--- a/lib/matplotlib/tests/test_cbook.py
+++ b/lib/matplotlib/tests/test_cbook.py
@@ -1,5 +1,6 @@
from __future__ import annotations
+import sys
import itertools
import pickle
@@ -16,6 +17... | [Bug]: plt.hist takes significantly more time with torch and jax arrays
### Bug summary
Hi,
Time taken to plot `plt.hist` directly on `jax` or `torch` arrays is significantly more than **combined time taken to first convert them to `numpy` and then using `plt.hist`**. Shouldn't `matplotlib` internally convert the... | The unpacking happens here:
https://github.com/matplotlib/matplotlib/blob/b61bb0b6392c23d38cd45c658bfcd44df145830d/lib/matplotlib/cbook.py#L2237-L2251
The pytorch tensor does not support any of the conversion methods, so Matplotlib doesn't really know what to do with it. There is a discussion in https://github.com/... | 1,684,077,060,000 | [
"third-party integration"
] | Performance Issue | [
"lib/matplotlib/cbook.py:_unpack_to_numpy"
] | [
"lib/matplotlib/cbook.py:_is_torch_array",
"lib/matplotlib/cbook.py:_is_jax_array"
] | 1 | 30 |
vllm-project/vllm | vllm-project__vllm-9390 | 83450458339b07765b0e72a822e5fe93eeaf5258 | null | diff --git a/benchmarks/benchmark_serving.py b/benchmarks/benchmark_serving.py
index c1a396c81f666..4580729fa4767 100644
--- a/benchmarks/benchmark_serving.py
+++ b/benchmarks/benchmark_serving.py
@@ -397,6 +397,7 @@ async def benchmark(
selected_percentile_metrics: List[str],
selected_percentiles: List[str],... | Benchmarking script does not limit the maximum concurrency
The current benchmarking script if specified with `INF` arrivals, will not limit the maximum concurrency level as shown [here](https://github.com/vllm-project/vllm/blob/703e42ee4b3efed3c71e7ae7d15f0f96e05722d4/benchmarks/benchmark_serving.py#L191).
If we can c... | Good point. PR welcomed!
@wangchen615 Please correct me if I misunderstood, but is this for testing the case where you have another layer on top of the model deployment with concurrency control?
I recently made https://github.com/vllm-project/vllm/pull/3194 to add prefix caching benchmark - @wangchen615 let me know if... | 1,729,025,741,000 | [
"ready"
] | Feature Request | [
"benchmarks/benchmark_serving.py:benchmark",
"benchmarks/benchmark_serving.py:main"
] | [] | 2 | 31 | |
ctc-oss/fapolicy-analyzer | ctc-oss__fapolicy-analyzer-809 | 9199ca7edad1481d9602e981ba6b1f0716f48d87 | null | diff --git a/Cargo.lock b/Cargo.lock
index 3b02a7962..126cb87a7 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -287,7 +287,6 @@ dependencies = [
"fapolicy-trust",
"pyo3",
"similar",
- "tempfile",
]
[[package]]
diff --git a/crates/daemon/src/error.rs b/crates/daemon/src/error.rs
index b289208db..044582d5e 100644
... | Detect systemd service start/stop events to replace hard coded delays
The original implementation used conservative hard coded delays to sync fapolicyd starts/stops {via dbus} with the invocation and termination of the Profiling target executables. The focus at that time was correct functionality however it's time for ... | This should be able to be done on the backend with a few aditions.
1. Listen for dbus events; would look similar to [this](https://github.com/diwic/dbus-rs/blob/master/dbus/examples/unity_focused_window.rs)
2. Register a Python callback with the backend
3. Callback when state changes
We don't have any examples ... | 1,678,129,184,000 | [
"bug"
] | Performance Issue | [
"fapolicy_analyzer/ui/features/profiler_feature.py:create_profiler_feature",
"fapolicy_analyzer/ui/profiler_page.py:ProfilerPage.handle_done",
"fapolicy_analyzer/ui/reducers/profiler_reducer.py:handle_start_profiling_request"
] | [] | 3 | 33 | |
django/django | django__django-16421 | 70f39e46f86b946c273340d52109824c776ffb4c | null | diff --git a/django/utils/text.py b/django/utils/text.py
index 374fd78f927d..9560ebc67840 100644
--- a/django/utils/text.py
+++ b/django/utils/text.py
@@ -2,12 +2,20 @@
import re
import secrets
import unicodedata
+from collections import deque
from gzip import GzipFile
from gzip import compress as gzip_compress
+f... | diff --git a/tests/template_tests/filter_tests/test_truncatewords_html.py b/tests/template_tests/filter_tests/test_truncatewords_html.py
index 32b7c81a7626..0cf41d83aeef 100644
--- a/tests/template_tests/filter_tests/test_truncatewords_html.py
+++ b/tests/template_tests/filter_tests/test_truncatewords_html.py
@@ -24,7 ... | Improve utils.text.Truncator &co to use a full HTML parser.
Description
(last modified by Carlton Gibson)
Original description:
I'm using Truncator.chars to truncate wikis, and it sometimes truncates in the middle of " entities, resulting in '<p>some text &qu</p>'
This is a limitation of the regex based imple... | ['Hi Thomas. Any chance of an example string (hopefully minimal) that creates the behaviour so we can have a look?', 1565074082.0]
["I think now that the security release are out let's just add bleach as dependency on master and be done with it?", 1565076701.0]
["Here's an example \u200bhttps://repl.it/@tdhooper/Django... | 1,672,779,147,000 | [] | Feature Request | [
"django/utils/text.py:Truncator.chars",
"django/utils/text.py:Truncator._text_chars",
"django/utils/text.py:Truncator.words",
"django/utils/text.py:Truncator._truncate_html"
] | [
"django/utils/text.py:calculate_truncate_chars_length",
"django/utils/text.py:TruncateHTMLParser.__init__",
"django/utils/text.py:TruncateHTMLParser.void_elements",
"django/utils/text.py:TruncateHTMLParser.handle_startendtag",
"django/utils/text.py:TruncateHTMLParser.handle_starttag",
"django/utils/text.p... | 4 | 34 |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-25186 | b2fe9746a862272a60ffc7d2c6563d28dd13a6c6 | null | diff --git a/doc/whats_new/v1.3.rst b/doc/whats_new/v1.3.rst
index 937c9c1448030..5290399310dcf 100644
--- a/doc/whats_new/v1.3.rst
+++ b/doc/whats_new/v1.3.rst
@@ -109,6 +109,13 @@ Changelog
out-of-bag scores via the `oob_scores_` or `oob_score_` attributes.
:pr:`24882` by :user:`Ashwin Mathur <awinml>`.
+- |E... | Improving IsolationForest predict time
### Discussed in https://github.com/scikit-learn/scikit-learn/discussions/25142
<div type='discussions-op-text'>
<sup>Originally posted by **fsiola** December 8, 2022</sup>
Hi,
When using [IsolationForest predict](https://github.com/scikit-learn/scikit-learn/blob/main/... | I will take this one them | 1,670,936,394,000 | [
"module:ensemble"
] | Performance Issue | [
"sklearn/ensemble/_iforest.py:IsolationForest.fit",
"sklearn/ensemble/_iforest.py:IsolationForest.score_samples",
"sklearn/ensemble/_iforest.py:IsolationForest._compute_score_samples"
] | [] | 3 | 38 | |
okta/okta-jwt-verifier-python | okta__okta-jwt-verifier-python-59 | cb4e6780c55c234690299fa4ccef5ad33746c2c2 | null | diff --git a/okta_jwt_verifier/jwt_utils.py b/okta_jwt_verifier/jwt_utils.py
index af187ed..dd1e3d1 100644
--- a/okta_jwt_verifier/jwt_utils.py
+++ b/okta_jwt_verifier/jwt_utils.py
@@ -1,7 +1,8 @@
import json
-from jose import jwt, jws
-from jose.exceptions import ExpiredSignatureError
+import jwt
+from jwt.exceptio... | diff --git a/tests/unit/test_jwt_verifier.py b/tests/unit/test_jwt_verifier.py
index 3693b63..a3d8680 100644
--- a/tests/unit/test_jwt_verifier.py
+++ b/tests/unit/test_jwt_verifier.py
@@ -1,7 +1,7 @@
import pytest
import time
-from jose.exceptions import JWTClaimsError
+from jwt.exceptions import InvalidTokenError... | Dependency python-Jose appears to be unmaintained
Hey - just a heads-up that it appears this library is using `python-jose` as a dependency, which hasn't been updated in ~2 years. Maintainers haven't shown any activity in GitHub for issues or pull requests in quite a while, either. It would probably be prudent to pivot... | > before CVEs start dropping up against the abandoned library.
Looks like that's now, found in [python-ecdsa](https://github.com/tlsfuzzer/python-ecdsa/security/advisories/GHSA-wj6h-64fc-37mp).
Are there any plans to use the `cryptography` build of `python-jose`, or migrate?
@bretterer any updates on this? Does Okta... | 1,714,487,268,000 | [] | Security Vulnerability | [
"okta_jwt_verifier/jwt_utils.py:JWTUtils.parse_token",
"okta_jwt_verifier/jwt_utils.py:JWTUtils.verify_claims",
"okta_jwt_verifier/jwt_utils.py:JWTUtils.verify_signature"
] | [] | 3 | 39 |
ray-project/ray | ray-project__ray-26818 | 1b06e7a83acd1c7b721327cef73bd5d3cb66faa2 | null | diff --git a/dashboard/client/src/api.ts b/dashboard/client/src/api.ts
index 42467df8e7e2d..e532d0829b98b 100644
--- a/dashboard/client/src/api.ts
+++ b/dashboard/client/src/api.ts
@@ -1,4 +1,4 @@
-import { formatUrl } from "./service/requestHandlers";
+import { formatUrl, get as getV2 } from "./service/requestHandlers... | diff --git a/dashboard/modules/actor/tests/test_actor.py b/dashboard/modules/actor/tests/test_actor.py
index 04a04a6fd1389..8cad11a58722b 100644
--- a/dashboard/modules/actor/tests/test_actor.py
+++ b/dashboard/modules/actor/tests/test_actor.py
@@ -342,5 +342,98 @@ class InfeasibleActor:
raise Exceptio... | [Bug] Dashboard takes up a lot of Memory
### Search before asking
- [X] I searched the [issues](https://github.com/ray-project/ray/issues) and found no similar issues.
### Ray Component
Dashboard
### Issue Severity
Medium: It contributes to significant difficulty to complete my task but I work arounds and get it ... | I belive we made some relevant fixes to the master. Is it possible to try out Ray master to see if the issue still exists?
Also cc @alanwguo
@rkooo567 this issue still exists for ray version 1.12.0
Here it takes up to 6.5 Gb. process running since 27 hours.
/home/ray/anaconda3/bin/python -u /home/ray/... | 1,658,370,033,000 | [
"@author-action-required"
] | Performance Issue | [
"dashboard/datacenter.py:DataOrganizer.get_node_workers",
"dashboard/datacenter.py:DataOrganizer.get_node_info",
"dashboard/modules/actor/actor_head.py:ActorHead.__init__",
"dashboard/modules/actor/actor_head.py:ActorHead._update_actors",
"dashboard/modules/actor/actor_head.py:ActorHead.run",
"dashboard/m... | [
"dashboard/modules/actor/actor_head.py:ActorHead._cleanup_actors"
] | 8 | 40 |
gitpython-developers/GitPython | gitpython-developers__GitPython-1636 | e19abe75bbd7d766d7f06171c6524431e4653545 | null | diff --git a/git/cmd.py b/git/cmd.py
index 3d170facd..3665eb029 100644
--- a/git/cmd.py
+++ b/git/cmd.py
@@ -5,7 +5,7 @@
# the BSD License: http://www.opensource.org/licenses/bsd-license.php
from __future__ import annotations
import re
-from contextlib import contextmanager
+import contextlib
import io
import logg... | diff --git a/test/test_git.py b/test/test_git.py
index c5d871f08..540ea9f41 100644
--- a/test/test_git.py
+++ b/test/test_git.py
@@ -4,10 +4,12 @@
#
# This module is part of GitPython and is released under
# the BSD License: http://www.opensource.org/licenses/bsd-license.php
+import contextlib
import os
+import shu... | CVE-2023-40590: Untrusted search path on Windows systems leading to arbitrary code execution
This appeared in the CVE additional information here https://github.com/gitpython-developers/GitPython/security/advisories/GHSA-wfm5-v35h-vwf4.
I found it reported already. I am reporting it here just in case.
| Thanks. This advisory originated in this repository and is thus known: https://github.com/gitpython-developers/GitPython/security/advisories/GHSA-wfm5-v35h-vwf4 .
However, it seems hard to communicate using an advisory, so we can keep this issue open to collect comments. | 1,693,402,739,000 | [] | Security Vulnerability | [
"git/cmd.py:Git.execute"
] | [] | 1 | 41 |
huggingface/optimum-benchmark | huggingface__optimum-benchmark-266 | 1992de306378f7d5848d36ddc73f15ba711c8d70 | null | diff --git a/optimum_benchmark/trackers/latency.py b/optimum_benchmark/trackers/latency.py
index cb236413..1e0f1e95 100644
--- a/optimum_benchmark/trackers/latency.py
+++ b/optimum_benchmark/trackers/latency.py
@@ -121,7 +121,8 @@ def __init__(self, device: str, backend: str):
self.device = device
sel... | Timeout with multiple AMD GPUs tensor parallelism in vLLM
## Problem Description
When attempting to run Optimum Benchmark in vLLM using tensor parallelism across multiple AMD GPUs (MI210), I encounter a timeout error from NCCL watchdog. However, the benchmark works fine with a single AMD GPU in vLLM, and the vLLM AP... | Yeah I still haven't had time to fix the vLLM multi-gpu support, it fails for some obscure reason that I can't put my finger on, because the only difference is that optimum-benchmark runs the engine in a separate process. did you try using the ray backend ?
Yes, ray backend leads to the same timeout, logs are similar
@... | 1,726,822,597,000 | [] | Performance Issue | [
"optimum_benchmark/trackers/latency.py:LatencyTracker.__init__"
] | [] | 1 | 42 | |
vllm-project/vllm | vllm-project__vllm-6050 | c87ebc3ef9ae6e8d6babbca782510ff924b3abc7 | null | diff --git a/vllm/config.py b/vllm/config.py
index 9854f175065a2..23c03bcb4da5d 100644
--- a/vllm/config.py
+++ b/vllm/config.py
@@ -957,12 +957,6 @@ def maybe_create_spec_config(
)
draft_hf_config = draft_model_config.hf_config
- if (draft_hf_config.model_type == "mlp_speculator"... | diff --git a/tests/spec_decode/e2e/test_integration_dist_tp2.py b/tests/spec_decode/e2e/test_integration_dist_tp2.py
index 5534b80c0aaa0..859d4234c458f 100644
--- a/tests/spec_decode/e2e/test_integration_dist_tp2.py
+++ b/tests/spec_decode/e2e/test_integration_dist_tp2.py
@@ -70,10 +70,6 @@ def test_target_model_tp_gt_... | [Feature]: MLPSpeculator Tensor Parallel support
### 🚀 The feature, motivation and pitch
`MLPSpeculator`-based speculative decoding was recently added in https://github.com/vllm-project/vllm/pull/4947, but the initial integration only covers single GPU usage.
There will soon be "speculator" models available for ... | initial thought:
* https://github.com/vllm-project/vllm/pull/5414 may be a bad fit for this; we should keep eyes open for best solution for MLPSpeculator
* the goal for this issue should be to get MLPSpeculator on TP==1 working with target model on TP>1. we can start today with a small model (don't have to wait for n... | 1,719,874,141,000 | [] | Feature Request | [
"vllm/config.py:SpeculativeConfig.maybe_create_spec_config",
"vllm/spec_decode/spec_decode_worker.py:SpecDecodeWorker.create_worker"
] | [] | 2 | 43 |
PrefectHQ/prefect | PrefectHQ__prefect-12019 | 276da8438e84fb7daf05255d1f9d87379d2d647b | null | diff --git a/src/prefect/_internal/concurrency/calls.py b/src/prefect/_internal/concurrency/calls.py
index 13e9e9bbfc61..6ca4dc45567e 100644
--- a/src/prefect/_internal/concurrency/calls.py
+++ b/src/prefect/_internal/concurrency/calls.py
@@ -10,6 +10,7 @@
import dataclasses
import inspect
import threading
+import w... | Task input persisted leading to memory not being released (same for output).
### First check
- [X] I added a descriptive title to this issue.
- [X] I used the GitHub search to find a similar request and didn't find it.
- [X] I searched the Prefect documentation for this feature.
### Prefect Version
2.x
##... | Hi @sibbiii, thanks for the well written issue and investigation. I can reproduce the behavior with your MRE.
I think it is unlikely that the references are maintained as part of results as you're not returning anything from your function.
I think this likely has to do with the dependency tracking or as your sai... | 1,708,123,117,000 | [] | Performance Issue | [
"src/prefect/_internal/concurrency/calls.py:get_current_call",
"src/prefect/_internal/concurrency/calls.py:set_current_call",
"src/prefect/_internal/concurrency/cancellation.py:AsyncCancelScope.__exit__"
] | [
"src/prefect/_internal/concurrency/calls.py:Future._invoke_callbacks"
] | 3 | 44 | |
streamlit/streamlit | streamlit__streamlit-6617 | cec1c141f7858e31f8200a9cdc42b8ddd09ab0e7 | null | diff --git a/lib/streamlit/runtime/app_session.py b/lib/streamlit/runtime/app_session.py
index 6fae7653b807..36e681c344f7 100644
--- a/lib/streamlit/runtime/app_session.py
+++ b/lib/streamlit/runtime/app_session.py
@@ -225,8 +225,10 @@ def shutdown(self) -> None:
self._uploaded_file_mgr.remove_session_file... | diff --git a/lib/tests/streamlit/runtime/app_session_test.py b/lib/tests/streamlit/runtime/app_session_test.py
index 2ee2e5d8cd40..448118736e9a 100644
--- a/lib/tests/streamlit/runtime/app_session_test.py
+++ b/lib/tests/streamlit/runtime/app_session_test.py
@@ -101,15 +101,19 @@ def test_shutdown(self, patched_disconn... | Updating images will increase memory usage
### Checklist
- [X] I have searched the [existing issues](https://github.com/streamlit/streamlit/issues) for similar issues.
- [X] I added a very descriptive title to this issue.
- [X] I have provided sufficient information below to help reproduce this issue.
### Summary
Wh... | @MathijsNL Thanks for reporting this. I was able to reproduce this issue. We do have something that is actually supposed to clean up the media file storage after a session. But this somehow might not work correctly.
I also tested with older Streamlit versions (e.g. 1.15), and this does seem to behave the same way.... | 1,683,075,857,000 | [
"security-assessment-completed"
] | Performance Issue | [
"lib/streamlit/runtime/app_session.py:AppSession.shutdown",
"lib/streamlit/runtime/forward_msg_cache.py:ForwardMsgCache.remove_expired_session_entries",
"lib/streamlit/runtime/runtime.py:Runtime._send_message"
] | [
"lib/streamlit/runtime/forward_msg_cache.py:ForwardMsgCache.remove_refs_for_session",
"lib/streamlit/runtime/forward_msg_cache.py:ForwardMsgCache.remove_expired_entries_for_session"
] | 3 | 46 |
JoinMarket-Org/joinmarket-clientserver | JoinMarket-Org__joinmarket-clientserver-1180 | aabfd3f7c2ec33391b89369bd1fe354659f10f0f | null | diff --git a/jmclient/jmclient/blockchaininterface.py b/jmclient/jmclient/blockchaininterface.py
index 2402ff7d3..65a4cfcc4 100644
--- a/jmclient/jmclient/blockchaininterface.py
+++ b/jmclient/jmclient/blockchaininterface.py
@@ -292,18 +292,36 @@ def import_addresses_if_needed(self, addresses, wallet_name):
... | yg-privacyenhanced.py: excessive CPU usage
At first startup of the Yield Generator, CPU usage seems acceptable, but as it sits running for a few days, it starts using excessive amounts of CPU time. It seems to depend on how many CoinJoins it has participated in. Case in point: I have two instances of `yg-privacyenhance... | > it is obsessively (many times per second!) calling `gettransaction`, all for the same transaction ID. The responses from Bitcoin Core show that the specified transaction has over 200 confirmations, so why is JoinMarket obsessively hammering requests for it?
It shouldn't, sounds like a bug somewhere.
> RPC call an... | 1,644,723,706,000 | [] | Performance Issue | [
"jmclient/jmclient/blockchaininterface.py:BitcoinCoreInterface._yield_transactions",
"jmclient/jmclient/blockchaininterface.py:BitcoinCoreNoHistoryInterface._yield_transactions",
"jmclient/jmclient/wallet_service.py:WalletService.__init__",
"jmclient/jmclient/wallet_service.py:WalletService.register_callbacks... | [
"jmclient/jmclient/wallet_service.py:WalletService._yield_new_transactions"
] | 9 | 47 | |
TagStudioDev/TagStudio | TagStudioDev__TagStudio-735 | 921a8875de22f7c136316edfb5d3038236414b57 | null | diff --git a/tagstudio/src/qt/modals/tag_search.py b/tagstudio/src/qt/modals/tag_search.py
index d35065675..fdd986ab5 100644
--- a/tagstudio/src/qt/modals/tag_search.py
+++ b/tagstudio/src/qt/modals/tag_search.py
@@ -52,7 +52,7 @@ def __init__(self, library: Library, exclude: list[int] = None, is_tag_chooser:
... | [Bug]: Adding (or searching for) tags gets increasingly slower in the same session (running process)
### Checklist
- [x] I am using an up-to-date version.
- [x] I have read the [documentation](https://github.com/TagStudioDev/TagStudio/blob/main/docs/index.md).
- [x] I have searched existing [issues](https://github.com... | I've been able to reproduce this, and it does indeed look like memory usage is increasing the more searches are preformed
After *much* debugging, I believe I've narrowed this down to the `translate_qobject()` calls inside the `TagWidget` objects that are use for the context menus. When removing these translation calls ... | 1,737,872,423,000 | [
"Priority: Critical",
"Type: UI/UX",
"TagStudio: Tags"
] | Performance Issue | [
"tagstudio/src/qt/modals/tag_search.py:TagSearchPanel.__init__",
"tagstudio/src/qt/modals/tag_search.py:TagSearchPanel.construct_tag_button",
"tagstudio/src/qt/modals/tag_search.py:TagSearchPanel.update_tags",
"tagstudio/src/qt/widgets/tag.py:TagWidget.__init__"
] | [
"tagstudio/src/qt/modals/tag_search.py:TagSearchPanel.build_create_tag_button"
] | 4 | 48 | |
micropython/micropython-lib | micropython__micropython-lib-947 | e4cf09527bce7569f5db742cf6ae9db68d50c6a9 | null | diff --git a/python-ecosys/requests/requests/__init__.py b/python-ecosys/requests/requests/__init__.py
index a9a183619..2951035f7 100644
--- a/python-ecosys/requests/requests/__init__.py
+++ b/python-ecosys/requests/requests/__init__.py
@@ -46,6 +46,8 @@ def request(
):
if headers is None:
headers = {}
+... | diff --git a/python-ecosys/requests/test_requests.py b/python-ecosys/requests/test_requests.py
index 513e533a3..ac77291b0 100644
--- a/python-ecosys/requests/test_requests.py
+++ b/python-ecosys/requests/test_requests.py
@@ -102,11 +102,11 @@ def chunks():
def test_overwrite_get_headers():
response = requests.r... | SECURITY: Requests module leaks passwords & usernames for HTTP Basic Auth
While looking at the MicroPython `requests` module (on the git HEAD), I noticed this:
If you make a request with HTTP basic auth (a username/password) and did not specify a headers dict, then I believe the username and password would be added ... | The MicroPython way aiui would be to mirror CPython's solution to this problem, which uses a `None` default value and then sets it to an empty dict at runtime:
https://github.com/psf/requests/blob/0e322af87745eff34caffe4df68456ebc20d9068/src/requests/models.py#L258-L276
And I see this is exactly what #823 does.... | 1,733,959,795,000 | [] | Security Vulnerability | [
"python-ecosys/requests/requests/__init__.py:request"
] | [] | 1 | 49 |
pm4-graders/3ES | pm4-graders__3ES-72 | 5b3fc277a8cacc1af4750fd8b541e20f27bc8487 | null | diff --git a/.gitignore b/.gitignore
index c1a2a16..0f72b94 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,5 +5,7 @@
/cv/testImages/kanti_img2.jpg
/cv/testImages/kanti_img1.jpeg
/cv/testImages/kanti_img2.jpeg
+/cv/testImages/kanti_telegram_compressed_1.jpg
+/cv/testImages/kanti_telegram_compressed_2.jpg
/cv/__pycac... | diff --git a/cv/testImages/crooked.jpg b/cv/testImages/crooked.jpg
new file mode 100644
index 0000000..2fade6f
Binary files /dev/null and b/cv/testImages/crooked.jpg differ
diff --git a/cv/testImages/crunched.jpg b/cv/testImages/crunched.jpg
new file mode 100644
index 0000000..3c214c5
Binary files /dev/null and b/cv/te... | Fix CV - test on more samples and make adjustments to make it more robust
| 1,683,218,934,000 | [] | Performance Issue | [
"backend/app/core/cv_result.py:Exam.__init__",
"cv/DigitRecognizer.py:DigitRecognizer.recognize_digits_in_photo",
"cv/DigitRecognizer.py:DigitRecognizer.predict_double_number",
"cv/DigitRecognizer.py:DigitRecognizer.predict_handwritten_cell",
"cv/DigitRecognizer.py:DigitRecognizer.find_grid_in_image",
"cv... | [] | 7 | 50 | |
fortra/impacket | fortra__impacket-1636 | 33058eb2fde6976ea62e04bc7d6b629d64d44712 | null | diff --git a/examples/ntlmrelayx.py b/examples/ntlmrelayx.py
index 5377a695e..e3efbbf81 100755
--- a/examples/ntlmrelayx.py
+++ b/examples/ntlmrelayx.py
@@ -57,10 +57,11 @@
RELAY_SERVERS = []
class MiniShell(cmd.Cmd):
- def __init__(self, relayConfig, threads):
+ def __init__(self, relayConfig, threads, api_a... | SOCKS server listens on all interfaces by default
### Configuration
impacket version: v0.10.1.dev1+20230207.182628.6cd68a05
Python version: 3.9.2
Target OS: NA
By default, the SOCKS server used by ntlmrelayx.py listens on all interfaces (0.0.0.0)1080, which is dangerous.
Please see:
https://github.com/f... | 1,698,135,613,000 | [
"medium"
] | Security Vulnerability | [
"examples/ntlmrelayx.py:MiniShell.__init__",
"examples/ntlmrelayx.py:MiniShell.do_socks",
"impacket/examples/ntlmrelayx/servers/socksserver.py:webService",
"impacket/examples/ntlmrelayx/servers/socksserver.py:SOCKS.__init__"
] | [] | 4 | 52 | ||
AzureAD/microsoft-authentication-library-for-python | AzureAD__microsoft-authentication-library-for-python-454 | 66a1c5a935e59c66281ccf73a3931681eeedee23 | null | diff --git a/msal/application.py b/msal/application.py
index 5d1406af..a06df303 100644
--- a/msal/application.py
+++ b/msal/application.py
@@ -11,8 +11,6 @@
from threading import Lock
import os
-import requests
-
from .oauth2cli import Client, JwtAssertionCreator
from .oauth2cli.oidc import decode_part
from .aut... | diff --git a/tests/test_authority_patch.py b/tests/test_authority_patch.py
deleted file mode 100644
index 1feca62d..00000000
--- a/tests/test_authority_patch.py
+++ /dev/null
@@ -1,32 +0,0 @@
-import unittest
-
-import msal
-from tests.http_client import MinimalHttpClient
-
-
-class DummyHttpClient(object):
- def ge... | MSAL can consider using lazy import for `request`, `jwt`
**Describe the bug**
Importing MSAL is can cost ~300ms on Windows due to some heavy libraries like `request` and `jwt`:
```
python -X importtime -c "import msal" 2>perf.log; tuna .\perf.log
```
![image](https://user-images.githubusercontent.com/40039... | 1,642,623,018,000 | [] | Performance Issue | [
"msal/authority.py:Authority.http_client",
"msal/authority.py:Authority.__init__",
"msal/authority.py:Authority.user_realm_discovery"
] | [] | 3 | 54 | |
Chainlit/chainlit | Chainlit__chainlit-1441 | beb44ca74f18b352fa078baf7038c2dc6b729e0c | null | diff --git a/backend/chainlit/server.py b/backend/chainlit/server.py
index b4bf0dd989..7c4a824b68 100644
--- a/backend/chainlit/server.py
+++ b/backend/chainlit/server.py
@@ -41,6 +41,7 @@
APIRouter,
Depends,
FastAPI,
+ File,
Form,
HTTPException,
Query,
@@ -839,11 +840,9 @@ async def de... | diff --git a/backend/tests/conftest.py b/backend/tests/conftest.py
index 94ae4a596a..7cc4266371 100644
--- a/backend/tests/conftest.py
+++ b/backend/tests/conftest.py
@@ -1,5 +1,6 @@
import datetime
from contextlib import asynccontextmanager
+from typing import Callable
from unittest.mock import AsyncMock, Mock
i... | fix(security): add auth to /project/file get endpoint
fixes https://github.com/Chainlit/chainlit/issues/1101
| Thanks @qvalentin for the report & fix! We'd like to take this along in the next release.
Any chance you could add a regression unittest demonstrating the issue and it's resolution? | 1,729,093,492,000 | [
"bug",
"backend",
"security",
"review-me",
"size:L"
] | Security Vulnerability | [
"backend/chainlit/server.py:upload_file",
"backend/chainlit/server.py:get_file"
] | [] | 2 | 56 |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-29130 | abbaed326c8f0e4a8083979701f01ce581612713 | null | diff --git a/.github/workflows/cuda-gpu-ci.yml b/.github/workflows/cuda-gpu-ci.yml
new file mode 100644
index 0000000000000..d962145cfbbc7
--- /dev/null
+++ b/.github/workflows/cuda-gpu-ci.yml
@@ -0,0 +1,47 @@
+name: CUDA GPU
+on:
+ workflow_dispatch:
+ inputs:
+ pr_id:
+ description: Test the contents ... | diff --git a/build_tools/github/pylatest_conda_forge_cuda_array-api_linux-64_conda.lock b/build_tools/github/pylatest_conda_forge_cuda_array-api_linux-64_conda.lock
new file mode 100644
index 0000000000000..38742e34cb4ea
--- /dev/null
+++ b/build_tools/github/pylatest_conda_forge_cuda_array-api_linux-64_conda.lock
@@ -... | Weekly CI run with NVidia GPU hardware
Now that #22554 was merged in `main`, it would be great to find a a way to run a weekly scheduled job to run the scikit-learn `main` test on a CI worker with an NVidia GPU and CuPy.
In case of failure, it could create a report as [dedicated issues](https://github.com/scikit-le... | Other opensource projects like dask and numba have accounts on https://gpuci.gpuopenanalytics.com/ for instance. Not sure what is the procedure to get scikit-learn accepted there (even with a limited quota of a few GPU hours per month).
Ive started looking into this
As discussed during the triaging meeting, we could us... | 1,716,971,019,000 | [
"Build / CI",
"Array API"
] | Feature Request | [
"build_tools/update_environments_and_lock_files.py:get_conda_environment_content"
] | [] | 1 | 57 |
django/django | django__django-18616 | b9aa3239ab1328c915684d89b87a49459cabd30b | null | diff --git a/django/http/response.py b/django/http/response.py
index 1dbaf46adda4..4a0ea6701375 100644
--- a/django/http/response.py
+++ b/django/http/response.py
@@ -627,10 +627,12 @@ def set_headers(self, filelike):
class HttpResponseRedirectBase(HttpResponse):
allowed_schemes = ["http", "https", "ftp"]
- ... | diff --git a/tests/httpwrappers/tests.py b/tests/httpwrappers/tests.py
index 3774ff2d6727..f85d33e82338 100644
--- a/tests/httpwrappers/tests.py
+++ b/tests/httpwrappers/tests.py
@@ -566,6 +566,27 @@ def test_redirect_lazy(self):
r = HttpResponseRedirect(lazystr("/redirected/"))
self.assertEqual(r.url... | Add 307 and 308 redirect response codes to django.shortcuts.redirect
Description
Other than 301 and 302 response codes for redirects, there is also:
https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/307
https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/308
Currently, Django is unaware of these.
Propo... | ['\u200bhttps://github.com/django/django/pull/18616 Proof of concept until the ticket itself is approved. After that tests and documentation will be updated.', 1727144938.0]
['\u200bhttps://github.com/django/django/pull/18616 Proof of concept until the ticket itself is approved. After that tests and documentation will ... | 1,727,162,493,000 | [] | Feature Request | [
"django/http/response.py:HttpResponseRedirectBase.__init__",
"django/shortcuts.py:redirect"
] | [] | 2 | 59 |
Bears-R-Us/arkouda | Bears-R-Us__arkouda-1969 | 6e3da833ae55173cfc7488faa1e1951c8506a255 | null | diff --git a/arkouda/dataframe.py b/arkouda/dataframe.py
index 10c98b1c69..6291b22ff8 100644
--- a/arkouda/dataframe.py
+++ b/arkouda/dataframe.py
@@ -1457,7 +1457,7 @@ def _prep_data(self, index=False, columns=None):
data = {c: self.data[c] for c in columns}
if index:
- data["Index"]... | diff --git a/tests/dataframe_test.py b/tests/dataframe_test.py
index 06c9f83e8c..23ad865b98 100644
--- a/tests/dataframe_test.py
+++ b/tests/dataframe_test.py
@@ -528,7 +528,7 @@ def test_save(self):
akdf.to_parquet(f"{tmp_dirname}/testName")
ak_loaded = ak.DataFrame.load(f"{tmp_dirname}/tes... | Multi-column Parquet write inefficiencies
Passing along a comment from another developer. " I've noticed that Parquet output from Arkouoda is currently very slow. The Arkouda client library saves multi-column dataframes by sending a separate writeParquet request to the server for each column, adding them to the file on... | Thanks for bringing this issue to our attention. When the Parquet work was implemented, it was before the dataframe functionality had been implemented, so that use case wasn't considered in the initial design. As you have seen, the Parquet append functionality is very sub-optimal and that is because Parquet does not su... | 1,671,202,682,000 | [] | Performance Issue | [
"arkouda/dataframe.py:DataFrame._prep_data",
"arkouda/io.py:_parse_errors",
"arkouda/io.py:to_parquet",
"arkouda/io.py:read"
] | [] | 4 | 60 |
django/django | django__django-18435 | 95827452571eb976c4f0d5e9ac46843948dd5fe6 | null | diff --git a/django/core/management/commands/runserver.py b/django/core/management/commands/runserver.py
index 132ee4c0795a..3795809a1226 100644
--- a/django/core/management/commands/runserver.py
+++ b/django/core/management/commands/runserver.py
@@ -188,3 +188,12 @@ def on_bind(self, server_port):
f"Quit ... | diff --git a/tests/admin_scripts/tests.py b/tests/admin_scripts/tests.py
index 2e77f2c97a62..67362460a99d 100644
--- a/tests/admin_scripts/tests.py
+++ b/tests/admin_scripts/tests.py
@@ -1597,6 +1597,13 @@ def test_zero_ip_addr(self):
"Starting development server at http://0.0.0.0:8000/",
self... | Add warning to runserver that it should not be used for production
Description
As per this discussion on the forum, I think adding a warning to the start of runserver would be valuable to those new to Django and a healthy reminder to those coming back to Django.
The wording of the warning is:
WARNING: This is a de... | ['I think it\'s worth highlighting that it does say "development server": Starting development server at http://127.0.0.1:8000/ Quit the server with CTRL-BREAK. We also have a warning in the \u200brunserver docs and a \u200bwarning in the tutorial (note that the tutorial runserver output would need to be updated if we ... | 1,722,443,076,000 | [] | Feature Request | [
"django/core/management/commands/runserver.py:Command.on_bind"
] | [] | 1 | 61 |
sqlfluff/sqlfluff | sqlfluff__sqlfluff-6399 | 80f4fc2d3bbc7839e41a9018ae4918118c309656 | null | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e8480e8d0e3..bfc033f0990 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -45,7 +45,6 @@ repos:
[
types-toml,
types-chardet,
- types-appdirs,
types-colorama,
... | diff --git a/test/cli/commands_test.py b/test/cli/commands_test.py
index 498b2cd82c3..f9751c96ea1 100644
--- a/test/cli/commands_test.py
+++ b/test/cli/commands_test.py
@@ -228,8 +228,8 @@ def test__cli__command_extra_config_fail():
],
],
assert_output_contains=(
- "Extra confi... | replace deprecated appdirs dependency with platformdirs
### Search before asking
- [X] I searched the [issues](https://github.com/sqlfluff/sqlfluff/issues) and found no similar issues.
### Description
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068011
python3-appdirs is dead upstream[1] and its Debian mai... | 1,729,789,307,000 | [] | Feature Request | [
"src/sqlfluff/core/config/loader.py:_get_user_config_dir_path",
"src/sqlfluff/core/config/loader.py:_load_user_appdir_config",
"src/sqlfluff/core/config/loader.py:load_config_up_to_path"
] | [] | 3 | 62 | |
aiortc/aiortc | aiortc__aiortc-795 | f4e3049875142a18fe32ad5f2c052b84a3112e30 | null | diff --git a/src/aiortc/rtcsctptransport.py b/src/aiortc/rtcsctptransport.py
index de5d0968d..c9439fc2f 100644
--- a/src/aiortc/rtcsctptransport.py
+++ b/src/aiortc/rtcsctptransport.py
@@ -1324,8 +1324,7 @@ async def _send(
self._outbound_stream_seq[stream_id] = uint16_add(stream_seq, 1)
# trans... | Slow sending messages with data channels
When I try to send 10 messages per second in datachannel I observe that messages are sent much slower, at 5 message per second.
I did a docker example to reproduce: https://gist.github.com/le-chat/844272e8d0f91dcbb61ba98ca635cd6b
From logs:
```
08:32:51.808407 sent №100,... | We have the same issue:
We try to send data for every frame which fails at 30fps.
For us there is an additional issue: we want the latency to be as low as possible; so the current code has an issue where even after applying your fix it will only send out batches of messages 10 times per second | 1,668,887,941,000 | [] | Performance Issue | [
"src/aiortc/rtcsctptransport.py:RTCSctpTransport._send"
] | [] | 1 | 63 | |
mathesar-foundation/mathesar | mathesar-foundation__mathesar-3117 | e7b175bc2f7db0ae6e69c723c6a054c6dc2152d8 | null | diff --git a/db/install.py b/db/install.py
index 43440b398d..1372659c63 100644
--- a/db/install.py
+++ b/db/install.py
@@ -1,5 +1,6 @@
+from psycopg.errors import InsufficientPrivilege
from sqlalchemy import text
-from sqlalchemy.exc import OperationalError
+from sqlalchemy.exc import OperationalError, ProgrammingErro... | The requirement of superuser postgresql access is problematic
## Problem
Mathesar needs a Postgres superuser to function correctly, from the docs at https://docs.mathesar.org/installation/build-from-source/
## Proposed solution
The mathesar user should not require superuser access.
## Additional context
The ... | Thanks for reporting this, @spapas. This is already a high-priority issue for us to resolve, requiring a superuser is one of the compromises we made to get our alpha version out of the door.
Hello friends, any news on this issue? This is very important for us and we can't actually use mathesar in procution until the su... | 1,690,823,334,000 | [
"pr-status: revision"
] | Security Vulnerability | [
"db/install.py:_create_database"
] | [] | 1 | 64 | |
huggingface/transformers | huggingface__transformers-22498 | 6fc44656b43f1de939a1e62dd59c45d1fec9f1aa | null | diff --git a/src/transformers/modeling_utils.py b/src/transformers/modeling_utils.py
index 9a6c29c27bdf..27faa252788d 100644
--- a/src/transformers/modeling_utils.py
+++ b/src/transformers/modeling_utils.py
@@ -336,7 +336,7 @@ def shard_checkpoint(
return shards, index
-def load_sharded_checkpoint(model, folde... | diff --git a/tests/trainer/test_trainer.py b/tests/trainer/test_trainer.py
index 310842713bde..78b6afeacd4e 100644
--- a/tests/trainer/test_trainer.py
+++ b/tests/trainer/test_trainer.py
@@ -25,6 +25,7 @@
import tempfile
import time
import unittest
+from itertools import product
from pathlib import Path
from unitt... | Implement safetensors checkpoint loading for Trainer
### Feature request
At the moment, Trainer loads models with `torch.load` method directly onto the cpu:
(`Trainer._load_from_checkpoint` method)
```python
...
# We load the model state dict on the CPU to avoid an OOM error.
... | The checkpoints are not saved in that format so there is no `model.safetensors` file to load from. We could add a training argument to use this format instead of the PyTorch format indeed. | 1,680,282,522,000 | [] | Feature Request | [
"src/transformers/modeling_utils.py:load_sharded_checkpoint",
"src/transformers/trainer.py:Trainer._load_from_checkpoint",
"src/transformers/trainer.py:Trainer._load_best_model",
"src/transformers/trainer.py:Trainer._save",
"src/transformers/trainer.py:Trainer._push_from_checkpoint",
"src/transformers/tra... | [] | 6 | 65 |
JackPlowman/repo_standards_validator | JackPlowman__repo_standards_validator-137 | 35962a9fbb5711ab436edca91026428aed1e2d1c | null | diff --git a/poetry.lock b/poetry.lock
index 4c114dc..aec2415 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -938,31 +938,31 @@ jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
[[package]]
name = "ruff"
-version = "0.9.3"
+version = "0.9.5"
description = "An extremely fast Python linter and code formatter, written in Rust."... | diff --git a/validator/tests/test_repository_checks.py b/validator/tests/test_repository_checks.py
index aed318f..739a97d 100644
--- a/validator/tests/test_repository_checks.py
+++ b/validator/tests/test_repository_checks.py
@@ -11,6 +11,7 @@
def test_check_repository() -> None:
# Arrange
+ configuration = M... | Fix private vulnerability disclosure incorrect value
| 1,738,967,972,000 | [
"validator",
"size/M",
"python",
"dependencies"
] | Security Vulnerability | [
"validator/__main__.py:main",
"validator/repository_checks.py:check_repository",
"validator/repository_checks.py:check_repository_security_details"
] | [
"validator/repository_checks.py:get_private_vulnerability_disclosures"
] | 3 | 66 | |
huggingface/transformers | huggingface__transformers-35453 | 6b550462139655d488d4c663086a63e98713c6b9 | null | diff --git a/src/transformers/optimization.py b/src/transformers/optimization.py
index 0ca5d36d0f40..d00c65925ef2 100644
--- a/src/transformers/optimization.py
+++ b/src/transformers/optimization.py
@@ -393,45 +393,71 @@ def _get_wsd_scheduler_lambda(
num_warmup_steps: int,
num_stable_steps: int,
num_dec... | diff --git a/tests/optimization/test_optimization.py b/tests/optimization/test_optimization.py
index 6982583d2bec..4ab248e75a9a 100644
--- a/tests/optimization/test_optimization.py
+++ b/tests/optimization/test_optimization.py
@@ -153,8 +153,8 @@ def test_schedulers(self):
[0.0, 5.0, 10.0, 8.165, 7.071... | Support Constant Learning Rate with Cooldown
### Feature request
In `transformers.optimization` support `constant learning rate with cooldown` functions.
### Motivation
This method will implement that scaling experiments can be performed with significantly reduced compute and GPU hours by utilizing fewer but reusa... | 1,735,486,425,000 | [] | Feature Request | [
"src/transformers/optimization.py:_get_wsd_scheduler_lambda",
"src/transformers/optimization.py:get_wsd_schedule",
"src/transformers/optimization.py:get_scheduler"
] | [] | 3 | 67 | |
una-auxme/paf | una-auxme__paf-565 | d63c492cb30b3091789dfd2b7179c65ef8c4a55a | null | diff --git a/code/perception/src/lidar_distance.py b/code/perception/src/lidar_distance.py
old mode 100644
new mode 100755
index 939224c5..5c937be0
--- a/code/perception/src/lidar_distance.py
+++ b/code/perception/src/lidar_distance.py
@@ -3,7 +3,7 @@
import rospy
import ros_numpy
import numpy as np
-import lidar_fi... | Seperate tasks from lidar_distance in seperate nodes for better performance
### Feature Description
The tasks of image calculation and clustering data points should be seperated into seperate nodes to improve the node performance which should reduce the latency in the visualization.
### Definition of Done
- Create l... | 1,734,020,557,000 | [] | Performance Issue | [
"code/perception/src/lidar_distance.py:LidarDistance.calculate_image",
"code/perception/src/lidar_distance.py:LidarDistance.reconstruct_img_from_lidar"
] | [] | 2 | 69 | ||
django/django | django__django-19043 | 0cabed9efa2c7abd1693860069f20ec5db41fcd8 | null | diff --git a/django/forms/fields.py b/django/forms/fields.py
index 202a6d72c878..4bd9c352f270 100644
--- a/django/forms/fields.py
+++ b/django/forms/fields.py
@@ -95,6 +95,7 @@ class Field:
"required": _("This field is required."),
}
empty_values = list(validators.EMPTY_VALUES)
+ bound_field_class... | diff --git a/tests/forms_tests/tests/test_forms.py b/tests/forms_tests/tests/test_forms.py
index b41424d43d64..20c86754c6e5 100644
--- a/tests/forms_tests/tests/test_forms.py
+++ b/tests/forms_tests/tests/test_forms.py
@@ -8,6 +8,7 @@
from django.core.validators import MaxValueValidator, RegexValidator
from django.fo... | Allow overriding BoundField class on forms and fields
Description
It would be useful if there was an easy way to add CSS classes to the HTML element which is generated when rendering a BoundField. I propose adding field_css_class, similar to required_css_class and error_css_class. https://docs.djangoproject.com/en/... | 1,736,837,596,000 | [] | Feature Request | [
"django/forms/fields.py:Field.__init__",
"django/forms/fields.py:Field.get_bound_field",
"django/forms/forms.py:BaseForm.__init__"
] | [] | 3 | 71 | |
python/cpython | python__cpython-7926 | 8463cb55dabb78571e32d8c8c7de8679ab421c2c | null | diff --git a/Lib/idlelib/macosx.py b/Lib/idlelib/macosx.py
index 89b645702d334d..2ea02ec04d661a 100644
--- a/Lib/idlelib/macosx.py
+++ b/Lib/idlelib/macosx.py
@@ -174,9 +174,8 @@ def overrideRootMenu(root, flist):
del mainmenu.menudefs[-3][1][0:2]
menubar = Menu(root)
root.configure(menu=menubar)
- me... | IDLE maxosc.overrideRootMenu: remove unused menudict
BPO | [33964](https://bugs.python.org/issue33964)
--- | :---
Nosy | @terryjreedy, @csabella
PRs | <li>python/cpython#7926</li>
Dependencies | <li>bpo-33963: IDLE macosx: add tests.</li>
<sup>*Note: these values reflect the state of the issue at the time it was migra... | Function local name 'menudict' is initialized empty, two key value pairs are added, and it is never touched again. | 1,529,986,082,000 | [
"skip news"
] | Performance Issue | [
"Lib/idlelib/macosx.py:overrideRootMenu"
] | [] | 1 | 73 | |
numpy/numpy | numpy__numpy-10615 | e20f11036bb7ce9f8de91eb4240e49ea4e41ef17 | null | diff --git a/doc/release/upcoming_changes/10615.deprecation.rst b/doc/release/upcoming_changes/10615.deprecation.rst
new file mode 100644
index 000000000000..7fa948ea85be
--- /dev/null
+++ b/doc/release/upcoming_changes/10615.deprecation.rst
@@ -0,0 +1,14 @@
+Only ndim-0 arrays are treated as scalars
+-----------------... | diff --git a/numpy/core/tests/test_deprecations.py b/numpy/core/tests/test_deprecations.py
index b92a20a12cea..e47a24995067 100644
--- a/numpy/core/tests/test_deprecations.py
+++ b/numpy/core/tests/test_deprecations.py
@@ -822,6 +822,18 @@ def test_deprecated_raised(self, dtype):
assert isinstance(e.__... | deprecate scalar conversions for rank>0 arrays
Numpy allows for conversion of arrays into scalars if they are size-1, i.e.,
```python
float(numpy.array(1.0)) # 1.0
float(numpy.array([1.0])) # 1.0
float(numpy.array([[[[1.0]]]])) # 1.0
# TypeError: only size-1 arrays can be converted to Python scalars
float(n... | Personally agree with you (there is a reason we got rid of the `operator.index` equivalent thing, where it was causing obvious problems) and would encourage anyone to try it.
But… I expect there are some annoying cases to solve and it might have a pretty large downstream impact which would make it a very slow change i... | 1,518,819,855,000 | [
"component: numpy._core",
"07 - Deprecation",
"62 - Python API"
] | Feature Request | [
"numpy/core/function_base.py:linspace"
] | [] | 1 | 74 |
pandas-dev/pandas | pandas-dev__pandas-29944 | aae9234e816469391512910e8265552f215d6263 | 297c59abbe218f3ccb89fb25bee48f619c1e0d2d | diff --git a/doc/source/whatsnew/v1.5.0.rst b/doc/source/whatsnew/v1.5.0.rst
index 45c32d689bd5b..fccfbb98f2591 100644
--- a/doc/source/whatsnew/v1.5.0.rst
+++ b/doc/source/whatsnew/v1.5.0.rst
@@ -133,6 +133,7 @@ Other enhancements
- :meth:`MultiIndex.to_frame` now supports the argument ``allow_duplicates`` and raises... | diff --git a/pandas/tests/plotting/frame/test_frame.py b/pandas/tests/plotting/frame/test_frame.py
index c4ce0b256cd41..3ec3744e43653 100644
--- a/pandas/tests/plotting/frame/test_frame.py
+++ b/pandas/tests/plotting/frame/test_frame.py
@@ -2071,6 +2071,90 @@ def test_plot_no_numeric_data(self):
with pytest.ra... | ENH: Group some columns in subplots with DataFrame.plot
`df.plot(subplots=True)` will create one subplot per column. Is there a way to group multiple columns on the same subplot (and leave the rest of the column separated)?
I'd be happy to submit a PR if that's something you'd consider? In terms of API `subplot` c... | Just to make sure I understand, `df.plot(subplots=[('a', 'b'), ('d', 'e', 'f')])` would have two axes?
I'm not sure, but I'm guessing it'd be somewhat complicated to work that into our current `subplots` logic. At glance, it looks like we assume `subplots=True` -> one axes per column in several places.
> `df.plot(su... | 1,575,230,687,000 | [
"Enhancement",
"Visualization"
] | Feature Request | [
"pandas/plotting/_matplotlib/core.py:MPLPlot.__init__",
"pandas/plotting/_matplotlib/core.py:MPLPlot._setup_subplots",
"pandas/plotting/_matplotlib/core.py:MPLPlot._get_ax"
] | [
"pandas/plotting/_matplotlib/core.py:MPLPlot._validate_subplots_kwarg",
"pandas/plotting/_matplotlib/core.py:MPLPlot._col_idx_to_axis_idx"
] | 3 | 75 |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-16948 | 7d93ca87ea14ef8f16be43d75cff72d05f48f7ed | 69132ebbd39f070590ca01813340b5b12c0d02ab | diff --git a/doc/computing/scaling_strategies.rst b/doc/computing/scaling_strategies.rst
index 5eee5728e4b9a..277d499f4cc13 100644
--- a/doc/computing/scaling_strategies.rst
+++ b/doc/computing/scaling_strategies.rst
@@ -80,6 +80,7 @@ Here is a list of incremental estimators for different tasks:
+ :class:`sklear... | diff --git a/sklearn/decomposition/tests/test_nmf.py b/sklearn/decomposition/tests/test_nmf.py
index cca0fad114ae5..9f3df5b64a803 100644
--- a/sklearn/decomposition/tests/test_nmf.py
+++ b/sklearn/decomposition/tests/test_nmf.py
@@ -1,10 +1,13 @@
import re
+import sys
+from io import StringIO
import numpy as np
im... | Online implementation of Non-negative Matrix Factorizarion (NMF)
<!--
If your issue is a usage question, submit it here instead:
- StackOverflow with the scikit-learn tag: https://stackoverflow.com/questions/tagged/scikit-learn
- Mailing List: https://mail.python.org/mailman/listinfo/scikit-learn
For more informati... | Nice figure! Let me see with the others if this should go in.
Could you run on a wikipedia text example?
Here is a benchmark on word counts for the first paragraph of 500k wikipedia articles. To speed up calculations, I used a HashingVectorizer with 4096 features. The KL divergence is calculated on 50k test samples.
... | 1,587,129,543,000 | [
"Waiting for Reviewer",
"module:decomposition"
] | Feature Request | [
"sklearn/decomposition/_nmf.py:norm",
"sklearn/decomposition/_nmf.py:_beta_divergence",
"sklearn/decomposition/_nmf.py:_fit_coordinate_descent",
"sklearn/decomposition/_nmf.py:_multiplicative_update_w",
"sklearn/decomposition/_nmf.py:_multiplicative_update_h",
"sklearn/decomposition/_nmf.py:_fit_multiplic... | [
"sklearn/decomposition/_nmf.py:MiniBatchNMF.__init__",
"sklearn/decomposition/_nmf.py:MiniBatchNMF._check_params",
"sklearn/decomposition/_nmf.py:MiniBatchNMF._solve_W",
"sklearn/decomposition/_nmf.py:MiniBatchNMF._minibatch_step",
"sklearn/decomposition/_nmf.py:MiniBatchNMF._minibatch_convergence",
"skle... | 9 | 76 |
sympy/sympy | sympy__sympy-27051 | a912bdfea081dd08b727118ce8bbc0f45c246730 | null | diff --git a/.mailmap b/.mailmap
index d36148d403cc..76ae38efbf77 100644
--- a/.mailmap
+++ b/.mailmap
@@ -197,6 +197,7 @@ Aaron Meurer <asmeurer@gmail.com>
Aaron Miller <acmiller273@gmail.com>
Aaron Stiff <69512633+AaronStiff@users.noreply.github.com>
Aaryan Dewan <aaryandewan@yahoo.com> Aaryan Dewan <49852384+aary... | `prime(n)` is very slow
```python
In [4]: %time [[prime(n) for i in range(n)] for n in range(1, 10)]
CPU times: user 180 ms, sys: 7.68 ms, total: 187 ms
Wall time: 185 ms
Out[4]:
[[2], [3, 3], [5, 5, 5], [7, 7, 7, 7], [11, 11, 11, 11, 11], [13, 13, 13, 13, 13, 13], [17, 17, 17, ↪
↪ 17, 17, 17, 17], [19, 19, 1... | I agree with setting a threshold and using the sieve for cases where `n` is below that threshold. However, I think we can only determine the specific value through experimentation.
Expanding the `sieve` to an appropriate length is important not just for `prime` but for many `ntheory` functions. Therefore, I think it... | 1,725,886,272,000 | [] | Performance Issue | [
"sympy/ntheory/generate.py:prime"
] | [] | 1 | 82 | |
numba/numba | numba__numba-9757 | b49469f06176769ecfa47a7865ef2030f4ed77f4 | null | diff --git a/docs/upcoming_changes/9757.bug_fix.rst b/docs/upcoming_changes/9757.bug_fix.rst
new file mode 100644
index 00000000000..17a239ef57c
--- /dev/null
+++ b/docs/upcoming_changes/9757.bug_fix.rst
@@ -0,0 +1,6 @@
+Fix excessive memory use/poor memory behaviour in the dispatcher for non-fingerprintable types.
+--... | Calling a @jit function with a type that cannot be "fingerprinted" uses excessive memory
<!--
Thanks for opening an issue! To help the Numba team handle your information
efficiently, please first ensure that there is no other issue present that
already describes the issue you have
(search at https://github.com/nu... | 1,729,170,497,000 | [
"5 - Ready to merge"
] | Performance Issue | [
"numba/core/dispatcher.py:_DispatcherBase.__init__",
"numba/core/dispatcher.py:_DispatcherBase._compile_for_args",
"numba/core/dispatcher.py:_DispatcherBase.typeof_pyval"
] | [] | 3 | 83 | ||
jobatabs/textec | jobatabs__textec-53 | 951409c20a2cf9243690b9bda7f7a22bb7c999a7 | null | diff --git a/src/repositories/reference_repository.py b/src/repositories/reference_repository.py
index 7768842..6d0d67b 100644
--- a/src/repositories/reference_repository.py
+++ b/src/repositories/reference_repository.py
@@ -34,14 +34,14 @@ def delete_reference(_id):
db.session.commit()
-def create_reference(r... | Fix code scanning alert - SQL doesn't use :symbols
Tracking issue for:
- [x] https://github.com/jobatabs/textec/security/code-scanning/3
| 1,733,481,438,000 | [] | Security Vulnerability | [
"src/repositories/reference_repository.py:create_reference"
] | [] | 1 | 86 | ||
django/django | django__django-19009 | 5f30fd2358fd60a514bdba31594bfc8122f30167 | null | diff --git a/django/contrib/gis/db/backends/base/models.py b/django/contrib/gis/db/backends/base/models.py
index 589c872da611..38309f0e5dea 100644
--- a/django/contrib/gis/db/backends/base/models.py
+++ b/django/contrib/gis/db/backends/base/models.py
@@ -1,4 +1,5 @@
from django.contrib.gis import gdal
+from django.uti... | diff --git a/tests/gis_tests/test_spatialrefsys.py b/tests/gis_tests/test_spatialrefsys.py
index 512fd217c375..b87dcf8b9293 100644
--- a/tests/gis_tests/test_spatialrefsys.py
+++ b/tests/gis_tests/test_spatialrefsys.py
@@ -1,5 +1,6 @@
import re
+from django.contrib.gis.db.backends.base.models import SpatialRefSysMix... | Refactoring SpatialRefSysMixin.srs for efficiency and better error handling
Description
(last modified by Arnaldo Govene)
The srs property in the SpatialRefSysMixin class has several issues that can be addressed to improve code efficiency, maintainability, and adherence to best practices. The following points high... | ['Thank you, agree the error overwrite could be improved, the caching logic is also due a refresh', 1735805940.0]
['Thank you, agree the error overwrite could be improved, the caching logic is also due a refresh', 1735805940.0] | 1,736,246,205,000 | [] | Performance Issue | [
"django/contrib/gis/db/backends/base/models.py:SpatialRefSysMixin.srs"
] | [] | 1 | 90 |
internetarchive/openlibrary | internetarchive__openlibrary-3196 | 061f07ec54cec6ffd169580641eb87144fe7ea14 | null | diff --git a/openlibrary/plugins/upstream/utils.py b/openlibrary/plugins/upstream/utils.py
index 24ab1af95e9..d9773e1c4c9 100644
--- a/openlibrary/plugins/upstream/utils.py
+++ b/openlibrary/plugins/upstream/utils.py
@@ -761,7 +761,8 @@ def setup():
'request': Request(),
'logger': logging.getLogger("o... | XSS issues on books page
<!-- What problem are we solving? What does the experience look like today? What are the symptoms? -->
XSS issues
### Evidence / Screenshot (if possible)
### Relevant url?
https://openlibrary.org/books/OL27912983M/'_script_alert(_Ultra_Security_)_script
https://twitter.com/BugsBun751... | https://openlibrary.org/people/darkscanner this is the corresponding patron who reported the XSS vectors
Should I fix this issue or somebody is already working?
@cYph3r1337 Go for it! Let us know if you have any questions; https://github.com/internetarchive/openlibrary/wiki/Frontend-Guide has a good summary of how temp... | 1,584,392,077,000 | [] | Security Vulnerability | [
"openlibrary/plugins/upstream/utils.py:setup"
] | [] | 1 | 91 | |
pandas-dev/pandas | pandas-dev__pandas-21401 | 2a097061700e2441349cafd89348c9fc8d14ba31 | null | diff --git a/doc/source/io.rst b/doc/source/io.rst
index 9aff1e54d8e98..fa6a8b1d01530 100644
--- a/doc/source/io.rst
+++ b/doc/source/io.rst
@@ -4989,6 +4989,54 @@ with respect to the timezone.
timezone aware or naive. When reading ``TIMESTAMP WITH TIME ZONE`` types, pandas
will convert the data to UTC.
+.. _io.sql... | diff --git a/pandas/tests/io/test_sql.py b/pandas/tests/io/test_sql.py
index eeeb55cb8e70c..c346103a70c98 100644
--- a/pandas/tests/io/test_sql.py
+++ b/pandas/tests/io/test_sql.py
@@ -375,12 +375,16 @@ def _read_sql_iris_named_parameter(self):
iris_frame = self.pandasSQL.read_query(query, params=params)
... | Use multi-row inserts for massive speedups on to_sql over high latency connections
I have been trying to insert ~30k rows into a mysql database using pandas-0.15.1, oursql-0.9.3.1 and sqlalchemy-0.9.4. Because the machine is as across the atlantic from me, calling `data.to_sql` was taking >1 hr to insert the data. On i... | This seems reasonable. Thanks for investigating this!
For the implementation, it will depend on how sqlalchemy deals with database flavors that does not support this (I can't test this at the moment, but it seems that sqlalchemy raises an error (eg http://stackoverflow.com/questions/23886764/multiple-insert-statements... | 1,528,542,064,000 | [
"Enhancement",
"Performance",
"IO SQL"
] | Feature Request | [
"pandas/core/generic.py:NDFrame.to_sql",
"pandas/io/sql.py:to_sql",
"pandas/io/sql.py:SQLTable.insert_statement",
"pandas/io/sql.py:SQLTable._execute_insert",
"pandas/io/sql.py:SQLTable.insert",
"pandas/io/sql.py:SQLDatabase.to_sql",
"pandas/io/sql.py:SQLiteDatabase.to_sql"
] | [
"pandas/io/sql.py:SQLTable._execute_insert_multi"
] | 7 | 92 |
django/django | django__django-13134 | 3071660acfbdf4b5c59457c8e9dc345d5e8894c5 | null | diff --git a/django/contrib/admin/sites.py b/django/contrib/admin/sites.py
index e200fdeb1e0c..600944ebc022 100644
--- a/django/contrib/admin/sites.py
+++ b/django/contrib/admin/sites.py
@@ -3,19 +3,23 @@
from weakref import WeakSet
from django.apps import apps
+from django.conf import settings
from django.contrib... | diff --git a/tests/admin_views/admin.py b/tests/admin_views/admin.py
index 4a72e3070f1d..1140f0349602 100644
--- a/tests/admin_views/admin.py
+++ b/tests/admin_views/admin.py
@@ -15,10 +15,11 @@
from django.core.mail import EmailMessage
from django.db import models
from django.forms.models import BaseModelFormSet
-f... | Avoid potential admin model enumeration
Description
When attacking a default Django server (one created with startproject is sufficient), you can enumerate the names of the applications and models by fuzzing the admin URL path. A redirect indicates that the model exists in that application, while a 404 indicates it ... | ["Thanks Daniel. Pasting here extracts from the security team discussion. This idea of adding a final_catch_all_pattern seems most likely: Well, I vaguely recalled, and managed to find, \u200bhttps://groups.google.com/d/msgid/django-developers/CAHdnYzu2zHVMcrjsSRpvRrdQBMntqy%2Bh0puWB2-uB8GOU6Tf7g%40mail.gmail.com where... | 1,593,639,332,000 | [] | Security Vulnerability | [
"django/contrib/admin/sites.py:AdminSite.get_urls"
] | [
"django/contrib/admin/sites.py:AdminSite.catch_all_view"
] | 1 | 93 |
webcompat/webcompat.com | webcompat__webcompat.com-2731 | 384c4feeef14a13655b8264dde9f10bfa5614134 | null | diff --git a/.circleci/config.yml b/.circleci/config.yml
index 7e91e837e..a065b8326 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -58,7 +58,7 @@ jobs:
nosetests
npm run lint
npm run build
- npm run test:js -- --reporters="runner" --firefoxBinary=`which... | diff --git a/tests/fixtures/api/issues.7a8b2d603c698b0e98a26c77661d12e2.json b/tests/fixtures/api/issues.7a8b2d603c698b0e98a26c77661d12e2.json
index 69dae89cc..7775bcddd 100644
--- a/tests/fixtures/api/issues.7a8b2d603c698b0e98a26c77661d12e2.json
+++ b/tests/fixtures/api/issues.7a8b2d603c698b0e98a26c77661d12e2.json
@@ ... | Removes unnecessary use of markdown-it
The Github API already [offers a markdown version](https://developer.github.com/v3/media/#html) for the requests we're making, so it's not necessary to use markdown-it to process our requests.
However we still need it to format users comments, so we're still using it on all of... | 1,544,481,443,000 | [] | Performance Issue | [
"webcompat/api/endpoints.py:proxy_issue",
"webcompat/api/endpoints.py:edit_issue",
"webcompat/api/endpoints.py:proxy_issues",
"webcompat/api/endpoints.py:get_user_activity_issues",
"webcompat/api/endpoints.py:get_issue_category",
"webcompat/api/endpoints.py:get_search_results",
"webcompat/api/endpoints.... | [] | 10 | 94 | |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-14012 | 15b54340ee7dc7cb870a418d1b5f6f553672f5dd | null | diff --git a/doc/whats_new/v0.22.rst b/doc/whats_new/v0.22.rst
index d1459bcb8caf3..de0572b9ffd7d 100644
--- a/doc/whats_new/v0.22.rst
+++ b/doc/whats_new/v0.22.rst
@@ -47,6 +47,11 @@ Changelog
validation data separately to avoid any data leak. :pr:`13933` by
`NicolasHug`_.
+- |Feature| :class:`ensemble.HistGra... | diff --git a/sklearn/ensemble/_hist_gradient_boosting/tests/test_warm_start.py b/sklearn/ensemble/_hist_gradient_boosting/tests/test_warm_start.py
new file mode 100644
index 0000000000000..806ad94ccee98
--- /dev/null
+++ b/sklearn/ensemble/_hist_gradient_boosting/tests/test_warm_start.py
@@ -0,0 +1,190 @@
+import numpy... | Feature request: warm starting for histogram-based GBM
#### Description
This is a feature request to add the warm start parameter, which exists for [gradient boosting](https://scikit-learn.org/dev/modules/generated/sklearn.ensemble.GradientBoostingClassifier.html#sklearn.ensemble.GradientBoostingClassifier), to the ne... | This is on my TODO list, but I don't know yet when I'll start working on this.
If anyone wants to give it a try I'll be happy to provide review and/or guidance.
@mfeurer thanks for the input!
@NicolasHug I think this would be great to prioritize. Shouldn't be too hard, right?
Honestly I'm happy to work on it but I'... | 1,559,575,018,000 | [] | Feature Request | [
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:BaseHistGradientBoosting.__init__",
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:BaseHistGradientBoosting.fit",
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:HistGradientBoostingRegressor.__init__",
"sklearn/ense... | [
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:BaseHistGradientBoosting._is_fitted",
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:BaseHistGradientBoosting._clear_state",
"sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py:BaseHistGradientBoosting._get_small_trainset"... | 4 | 95 |
airbnb/knowledge-repo | airbnb__knowledge-repo-558 | d1874d3e71994cd9bb769d60133c046b6d2b8bb5 | null | diff --git a/knowledge_repo/app/routes/comment.py b/knowledge_repo/app/routes/comment.py
index 988d82840..5fe02bce6 100644
--- a/knowledge_repo/app/routes/comment.py
+++ b/knowledge_repo/app/routes/comment.py
@@ -6,7 +6,7 @@
- /delete_comment
"""
import logging
-from flask import request, Blueprint, g
+from flask ... | XSS vulnerability
Auto-reviewers: @NiharikaRay @matthewwardrop @earthmancash @danfrankj
Hello, guys!
There is a cross-site scripting (XSS) vulnerability in the Knowledge Repo 0.7.4 (other versions may be affected as well) which allows remote attackers to inject arbitrary JavaScript via post comments functionalit... | Thanks Ekzorcist. I'll make sure this gets fixed before the next release :).
XSS is also present on 0.7.6
Is this one fixed @fahrishb?
Also raised in #254. We should prioritize fixing this.
Hi @redyaffle,
I suspect that this is just one in a myriad of security vulnerabilities that exist throughout the knowledge repo... | 1,590,817,301,000 | [] | Security Vulnerability | [
"knowledge_repo/app/routes/comment.py:post_comment"
] | [] | 1 | 96 | |
pulp/pulp_rpm | pulp__pulp_rpm-3224 | 6b999b4d8a16d936927e3fc9dec74fe506c25226 | null | diff --git a/CHANGES/3225.misc b/CHANGES/3225.misc
new file mode 100644
index 000000000..e1a600d91
--- /dev/null
+++ b/CHANGES/3225.misc
@@ -0,0 +1,1 @@
+Load one Artifact checksum type taken package_checksum_type during publish metadata generation.
diff --git a/CHANGES/3226.misc b/CHANGES/3226.misc
new file mode 10064... | Switch to values() instead of select_related
**Version**
all
**Describe the bug**
Some queries use select_related, if we do not need the model instance, we could just use values() that will produce queryset dict results instead.
**To Reproduce**
Steps to reproduce the behavior:
**Expected behavior**
A clear ... | 1,691,165,280,000 | [
"backport-3.22"
] | Performance Issue | [
"pulp_rpm/app/tasks/publishing.py:PublicationData.publish_artifacts",
"pulp_rpm/app/tasks/publishing.py:generate_repo_metadata",
"pulp_rpm/app/tasks/synchronizing.py:add_metadata_to_publication"
] | [] | 3 | 97 | ||
sancus-tee/sancus-compiler | sancus-tee__sancus-compiler-36 | dc3910192f99374c91ac5f12187dbc460454fa1f | null | diff --git a/src/drivers/linker.py b/src/drivers/linker.py
index 4f3ec85..c369e43 100644
--- a/src/drivers/linker.py
+++ b/src/drivers/linker.py
@@ -17,6 +17,7 @@
MAC_SIZE = int(sancus.config.SECURITY / 8)
KEY_SIZE = MAC_SIZE
+CONNECTION_STRUCT_SIZE = 6 + KEY_SIZE
class SmEntry:
@@ -63,7 +64,7 @@ def add_sym(f... | diff --git a/src/stubs/sm_attest.c b/src/stubs/sm_attest.c
new file mode 100644
index 0000000..6bfec25
--- /dev/null
+++ b/src/stubs/sm_attest.c
@@ -0,0 +1,16 @@
+#include "reactive_stubs_support.h"
+
+uint16_t SM_ENTRY(SM_NAME) __sm_attest(const uint8_t* challenge, size_t len,
+ uint8_t *result)
+{
+ if( !sancus_i... | Check for integer overflow in sancus_is_outside_sm macro
| thanks for the PR! Not sure about your first clause "( __OUTSIDE_SM(p, sm) && ((len <= 0) ||". If the length is zero, the condition should always be true and the outside_sm is not necessary I'd say. A negative length doesn't make any sense and the disadvantage of a macro is that we can't easily enforce an `unsigned` ty... | 1,629,731,760,000 | [] | Security Vulnerability | [
"src/drivers/linker.py:add_sym",
"src/drivers/linker.py:get_io_sym_map",
"src/drivers/linker.py:get_io_sect_map",
"src/drivers/linker.py:sort_entries",
"src/drivers/sancus/sancus_config.py:SmConfig.__init__",
"src/drivers/sancus/sancus_config.py:SmConfig.__str__"
] | [
"src/drivers/sancus/sancus_config.py:SmConfig.num_connections"
] | 6 | 98 |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-6116 | 5e4f524f8408e5a0efb96f8128504f8ca747a95e | null | diff --git a/doc/whats_new.rst b/doc/whats_new.rst
index b5f10da91d28f..a4b775ec66d0a 100644
--- a/doc/whats_new.rst
+++ b/doc/whats_new.rst
@@ -36,6 +36,11 @@ Enhancements
(`#6288 <https://github.com/scikit-learn/scikit-learn/pull/6288>`_) by
`Jake VanderPlas`_.
+ - :class:`ensemble.GradientBoostingCla... | diff --git a/sklearn/ensemble/tests/test_gradient_boosting.py b/sklearn/ensemble/tests/test_gradient_boosting.py
index 1ebf82fa3ae44..634bc259a1167 100644
--- a/sklearn/ensemble/tests/test_gradient_boosting.py
+++ b/sklearn/ensemble/tests/test_gradient_boosting.py
@@ -1050,6 +1050,9 @@ def check_sparse_input(EstimatorC... | GradientBoostingClassifier.fit accepts sparse X, but .predict does not
I have a sparse dataset that is too large for main memory if I call `X.todense()`. If I understand correctly, `GradientBoostingClassifier.fit` will accept my sparse `X`, but it is not currently possible to use `GradientBoostingClassifier.predict` o... | Confirmed. I think small rework of https://github.com/scikit-learn/scikit-learn/blob/master/sklearn/ensemble/_gradient_boosting.pyx#L39 is needed.
Looks like function _predict_regression_tree_inplace_fast was written to somehow optimize prediction speed. But i see some problems in it, its main loop https://github.com/s... | 1,452,013,011,000 | [
"Waiting for Reviewer"
] | Feature Request | [
"sklearn/ensemble/gradient_boosting.py:BaseGradientBoosting._staged_decision_function",
"sklearn/ensemble/gradient_boosting.py:GradientBoostingClassifier.decision_function",
"sklearn/ensemble/gradient_boosting.py:GradientBoostingClassifier.staged_decision_function",
"sklearn/ensemble/gradient_boosting.py:Grad... | [] | 10 | 99 |
duncanscanga/VDRS-Solutions | duncanscanga__VDRS-Solutions-73 | c97e24d072fe1bffe3dc9e3b363d40b725a70be9 | null | diff --git a/.gitignore b/.gitignore
index c5586c4..cc6983a 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,6 +23,8 @@ docs/_build/
.vscode
db.sqlite
**/__pycache__/
+**/latest_logs
+**/archived_logs
# Coverage reports
htmlcov/
diff --git a/app/models.py b/app/models.py
index 5ae4e11..562268e 100644
--- a/app/mo... | diff --git a/app_test/frontend/test_listing.py b/app_test/frontend/test_listing.py
index bc47c57..c6a75da 100644
--- a/app_test/frontend/test_listing.py
+++ b/app_test/frontend/test_listing.py
@@ -1,5 +1,4 @@
from seleniumbase import BaseCase
-
from app_test.conftest import base_url
from app.models import Booking, L... | Test SQL Injection: Register Function (name, email)
| 1,668,638,393,000 | [] | Security Vulnerability | [
"app/models.py:register"
] | [] | 1 | 100 | |
scipy/scipy | scipy__scipy-5647 | ccb338fa0521070107200a9ebcab67905b286a7a | null | diff --git a/benchmarks/benchmarks/spatial.py b/benchmarks/benchmarks/spatial.py
index f3005f6d70bb..0825bd5dcfa8 100644
--- a/benchmarks/benchmarks/spatial.py
+++ b/benchmarks/benchmarks/spatial.py
@@ -106,27 +106,74 @@ class Neighbors(Benchmark):
[1, 2, np.inf],
[0.2, 0.5],
BOX_SIZES, LEAF_... | diff --git a/scipy/spatial/tests/test_kdtree.py b/scipy/spatial/tests/test_kdtree.py
index e5f85440fa86..6c1a51772e20 100644
--- a/scipy/spatial/tests/test_kdtree.py
+++ b/scipy/spatial/tests/test_kdtree.py
@@ -4,13 +4,17 @@
from __future__ import division, print_function, absolute_import
from numpy.testing import ... | Massive performance regression in cKDTree.query with L_inf distance in scipy 0.17
Hi,
While running some of my own code, I noticed a major slowdown in scipy 0.17 which I tracked to the cKDtree.query call with L_inf distance.
I did a git bisect and tracked the commit that caused the issue -- the commit is :
58a10c26883... | 1,451,630,231,000 | [
"enhancement",
"scipy.spatial"
] | Performance Issue | [
"benchmarks/benchmarks/spatial.py:Neighbors.setup",
"benchmarks/benchmarks/spatial.py:Neighbors.time_sparse_distance_matrix",
"benchmarks/benchmarks/spatial.py:Neighbors.time_count_neighbors"
] | [
"benchmarks/benchmarks/spatial.py:CNeighbors.setup",
"benchmarks/benchmarks/spatial.py:CNeighbors.time_count_neighbors_deep",
"benchmarks/benchmarks/spatial.py:CNeighbors.time_count_neighbors_shallow"
] | 3 | 101 | |
plone/plone.restapi | plone__plone.restapi-859 | 32a80ab4850252f1d5b9d1b3c847e9e32d3aa45e | null | diff --git a/news/857.bugfix b/news/857.bugfix
new file mode 100644
index 0000000000..acfdabf048
--- /dev/null
+++ b/news/857.bugfix
@@ -0,0 +1,2 @@
+Sharing POST: Limit roles to ones the user is allowed to delegate.
+[lgraf]
\ No newline at end of file
diff --git a/src/plone/restapi/deserializer/local_roles.py b/src/p... | diff --git a/src/plone/restapi/tests/test_content_local_roles.py b/src/plone/restapi/tests/test_content_local_roles.py
index a26e6f3877..bd27f9f48a 100644
--- a/src/plone/restapi/tests/test_content_local_roles.py
+++ b/src/plone/restapi/tests/test_content_local_roles.py
@@ -6,6 +6,8 @@
from plone.app.testing import SI... | Privilege escalation in @sharing endpoint (PloneHotfix20200121)
- https://github.com/plone/Products.CMFPlone/issues/3021
- https://plone.org/security/hotfix/20200121/privilege-escalation-when-plone-restapi-is-installed
`plone.restapi.deserializer.local_roles.DeserializeFromJson` has a weakness.
This endpoint was i... | 1,579,683,301,000 | [] | Security Vulnerability | [
"src/plone/restapi/deserializer/local_roles.py:DeserializeFromJson.__call__"
] | [] | 1 | 103 | |
openwisp/openwisp-users | openwisp__openwisp-users-286 | 6c083027ed7bb467351f8f05ac201fa60d9bdc24 | null | diff --git a/openwisp_users/admin.py b/openwisp_users/admin.py
index 8619e39d..f0cb45aa 100644
--- a/openwisp_users/admin.py
+++ b/openwisp_users/admin.py
@@ -318,7 +318,7 @@ def get_readonly_fields(self, request, obj=None):
# do not allow operators to escalate their privileges
if not request.user.is_... | diff --git a/openwisp_users/tests/test_admin.py b/openwisp_users/tests/test_admin.py
index f6e4e767..0c4157d3 100644
--- a/openwisp_users/tests/test_admin.py
+++ b/openwisp_users/tests/test_admin.py
@@ -261,6 +261,21 @@ def test_admin_change_non_superuser_readonly_fields(self):
html = 'class="readonly"><im... | [bug/security] Org managers can escalate themselves to superusers
**Expected behavior:** org manager (non superuser) should not be able to edit permissions, nor flag themselves or others are superusers.
**Actual behavior**: org manager (non superuser) are able to flag themselves or others are superusers.
This is ... | 1,634,301,535,000 | [] | Security Vulnerability | [
"openwisp_users/admin.py:UserAdmin.get_readonly_fields"
] | [] | 1 | 104 | |
rucio/rucio | rucio__rucio-4930 | 92474868cec7d64b83b46b451ecdc4a294ef2711 | null | diff --git a/lib/rucio/web/ui/flask/common/utils.py b/lib/rucio/web/ui/flask/common/utils.py
index fd905830e2..fd62365f6d 100644
--- a/lib/rucio/web/ui/flask/common/utils.py
+++ b/lib/rucio/web/ui/flask/common/utils.py
@@ -94,8 +94,6 @@ def html_escape(s, quote=True):
# catch these from the webpy input() storage objec... | Privilege escalation issue in the Rucio WebUI
Motivation
----------
The move to FLASK as a webui backend introduced a cookie leak in the auth_token workflows of the webui. This potentially leak the contents of cookies to other sessions. Impact is that Rucio authentication tokens are leaked to other users accessing th... | 1,634,836,642,000 | [] | Security Vulnerability | [
"lib/rucio/web/ui/flask/common/utils.py:add_cookies",
"lib/rucio/web/ui/flask/common/utils.py:redirect_to_last_known_url",
"lib/rucio/web/ui/flask/common/utils.py:finalize_auth",
"lib/rucio/web/ui/flask/common/utils.py:authenticate"
] | [] | 4 | 105 | ||
AzureAD/microsoft-authentication-library-for-python | AzureAD__microsoft-authentication-library-for-python-407 | 3062770948f1961a13767ee85dd7ba664440feb3 | null | diff --git a/msal/application.py b/msal/application.py
index 686cc95d..3651d216 100644
--- a/msal/application.py
+++ b/msal/application.py
@@ -170,6 +170,7 @@ def __init__(
# This way, it holds the same positional param place for PCA,
# when we would eventually want to add this feature... | Instance metadata caching
This issue is inspired by an improvement made in MSAL .Net 4.1:
* documented in [its release blog post here](https://github.com/AzureAD/microsoft-authentication-library-for-dotnet/wiki/msal-net-4.1#getaccounts-and-acquiretokensilent-are-now-less-network-chatty),
* its original issue [this on... | 1,631,732,455,000 | [] | Performance Issue | [
"msal/application.py:ClientApplication.__init__"
] | [] | 1 | 106 | ||
home-assistant/core | home-assistant__core-15182 | 4fbe3bb07062b81ac4562d4080550d92cbd47828 | null | diff --git a/homeassistant/components/http/__init__.py b/homeassistant/components/http/__init__.py
index d8c877e83a205..f769d2bc4ffba 100644
--- a/homeassistant/components/http/__init__.py
+++ b/homeassistant/components/http/__init__.py
@@ -180,7 +180,7 @@ def __init__(self, hass, api_password,
middlewares... | diff --git a/tests/components/http/test_auth.py b/tests/components/http/test_auth.py
index a44d17d513db9..dd8b2cd35c46c 100644
--- a/tests/components/http/test_auth.py
+++ b/tests/components/http/test_auth.py
@@ -41,7 +41,7 @@ def app():
"""Fixture to setup a web.Application."""
app = web.Application()
a... | Security issue, unauthorized trusted access by spoofing x-forwarded-for header
**Home Assistant release with the issue:**
0.68.1 but probably older versions too
**Last working Home Assistant release (if known):**
N/A
**Operating environment (Hass.io/Docker/Windows/etc.):**
Hassbian but should be applicable to ... | This used to work (last known working version 0.62)...but after upgrading recently and checking it in the latest dev version I can confirm that it is an issue
The thing is that I didnt even hacked the headers and still no password is asked when connecting from external network
@rofrantz if you are not spoofing the hea... | 1,530,140,910,000 | [
"core",
"cla-signed",
"integration: http"
] | Security Vulnerability | [
"homeassistant/components/http/__init__.py:HomeAssistantHTTP.__init__",
"homeassistant/components/http/real_ip.py:setup_real_ip"
] | [] | 2 | 107 |
jazzband/django-two-factor-auth | jazzband__django-two-factor-auth-390 | 430ef08a2c6cec4e0ce6cfa4a08686d4e62f73b7 | null | diff --git a/CHANGELOG.md b/CHANGELOG.md
index d242f7369..45b1cc581 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,8 @@
### Changed
- The templates are now based on Bootstrap 4.
+- `DisableView` now checks user has verified before disabling two-factor on
+ their account
## 1.12 - 2020-07-08
### Added
... | diff --git a/tests/test_views_disable.py b/tests/test_views_disable.py
index 69a74a8ff..74b963f91 100644
--- a/tests/test_views_disable.py
+++ b/tests/test_views_disable.py
@@ -2,7 +2,7 @@
from django.shortcuts import resolve_url
from django.test import TestCase
from django.urls import reverse
-from django_otp impor... | DisableView doesn't require request user to be verified
`DisableView` only checks that the request user *has* a valid, not that the user is verified.
It is possible that if a site has been misconfigured and allows users to bypass django-two-factor-auth's login view (e.g. the admin site hasn't been configured correct... | I think this is a fairly minor security issue as it relies on things beyond our control going wrong first and no secrets are exposed. I should have PR ready by the end of the day.
I think this is a fairly minor security issue as it relies on things beyond our control going wrong first and no secrets are exposed. I shou... | 1,601,579,910,000 | [] | Security Vulnerability | [
"two_factor/views/profile.py:DisableView.get",
"two_factor/views/profile.py:DisableView.form_valid"
] | [
"two_factor/views/profile.py:DisableView.dispatch"
] | 2 | 108 |
netbox-community/netbox | netbox-community__netbox-7676 | 8f1acb700d72467ffe7ae5c8502422a1eac0693d | null | diff --git a/netbox/netbox/authentication.py b/netbox/netbox/authentication.py
index 653fad3b055..a67ec451d1e 100644
--- a/netbox/netbox/authentication.py
+++ b/netbox/netbox/authentication.py
@@ -34,7 +34,7 @@ def get_object_permissions(self, user_obj):
object_permissions = ObjectPermission.objects.filter(
... | gunicorn spends 80% of each request in get_object_permissions()
### NetBox version
v3.0.3
### Python version
3.9
### Steps to Reproduce
1. Configure Netbox with AD authentication (a few thousands users + heavy nesting)
2. Create a bunch of devices (~500 servers in my case, ~500 cables, ~50 VLANs, ~500 I... | Nice sleuthing! This looks related to (if not the same root issue as) #6926. Do you agree?
Also, can you confirm whether this is reproducible using local authentication, or only as an LDAP user?
> Nice sleuthing! This looks related to (if not the same root issue as) #6926. Do you agree?
I'm not sure, but looks re... | 1,635,451,702,000 | [] | Performance Issue | [
"netbox/netbox/authentication.py:ObjectPermissionMixin.get_object_permissions"
] | [] | 1 | 109 | |
Innopoints/backend | Innopoints__backend-124 | c1779409130762a141710875bd1d758c8671b1d8 | null | diff --git a/innopoints/blueprints.py b/innopoints/blueprints.py
index dc520e8..f5d350e 100644
--- a/innopoints/blueprints.py
+++ b/innopoints/blueprints.py
@@ -5,6 +5,8 @@
from flask import Blueprint
+from innopoints.core.helpers import csrf_protect
+
def _factory(partial_module_string, url_prefix='/'):
"... | Implement CSRF protection
| 1,588,369,030,000 | [] | Security Vulnerability | [
"innopoints/views/account.py:get_info",
"innopoints/views/authentication.py:authorize",
"innopoints/views/authentication.py:login_cheat"
] | [
"innopoints/core/helpers.py:csrf_protect",
"innopoints/schemas/account.py:AccountSchema.get_csrf_token"
] | 3 | 110 | ||
zulip/zulip | zulip__zulip-14091 | cb85763c7870bd6c83e84e4e7bca0900810457e9 | null | diff --git a/tools/coveragerc b/tools/coveragerc
index b47d57aee05af..24b0536d71b23 100644
--- a/tools/coveragerc
+++ b/tools/coveragerc
@@ -15,6 +15,8 @@ exclude_lines =
raise UnexpectedWebhookEventType
# Don't require coverage for blocks only run when type-checking
if TYPE_CHECKING:
+ # Don't requir... | diff --git a/tools/test-backend b/tools/test-backend
index 83a1fb73a9f21..e3ce1c4daee3f 100755
--- a/tools/test-backend
+++ b/tools/test-backend
@@ -93,7 +93,6 @@ not_yet_fully_covered = {path for target in [
'zerver/lib/parallel.py',
'zerver/lib/profile.py',
'zerver/lib/queue.py',
- 'zerver/lib/rate_... | Optimize rate_limiter performance for get_events queries
See https://chat.zulip.org/#narrow/stream/3-backend/topic/profiling.20get_events/near/816860 for profiling details, but basically, currently a get_events request spends 1.4ms/request talking to redis for our rate limiter, which is somewhere between 15% and 50% of... | Hello @zulip/server-production members, this issue was labeled with the "area: production" label, so you may want to check it out!
<!-- areaLabelAddition -->
@zulipbot claim
Hello @zulip/server-production members, this issue was labeled with the "area: production" label, so you may want to check it out!
<!-- areaLabe... | 1,583,193,587,000 | [
"size: XL",
"has conflicts"
] | Performance Issue | [
"zerver/lib/rate_limiter.py:RateLimitedObject.rate_limit",
"zerver/lib/rate_limiter.py:RateLimitedObject.__init__",
"zerver/lib/rate_limiter.py:RateLimitedObject.max_api_calls",
"zerver/lib/rate_limiter.py:RateLimitedObject.max_api_window",
"zerver/lib/rate_limiter.py:RateLimiterBackend.block_access",
"ze... | [
"zerver/lib/rate_limiter.py:RateLimitedObject.get_rules",
"zerver/lib/rate_limiter.py:TornadoInMemoryRateLimiterBackend._garbage_collect_for_rule",
"zerver/lib/rate_limiter.py:TornadoInMemoryRateLimiterBackend.need_to_limit",
"zerver/lib/rate_limiter.py:TornadoInMemoryRateLimiterBackend.get_api_calls_left",
... | 8 | 111 |
modin-project/modin | modin-project__modin-3404 | 41213581b974760928ed36f05c479937dcdfea55 | null | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 8dd750c75be..85cbe64b76a 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -447,6 +447,8 @@ jobs:
- run: pytest -n 2 modin/experimental/xgboost/test/test_default.py
- run: pytest -n 2 modin/experimental/xgboost/te... | diff --git a/modin/experimental/xgboost/test/test_dmatrix.py b/modin/experimental/xgboost/test/test_dmatrix.py
new file mode 100644
index 00000000000..c9498131ef4
--- /dev/null
+++ b/modin/experimental/xgboost/test/test_dmatrix.py
@@ -0,0 +1,160 @@
+# Licensed to Modin Development Team under one or more contributor lic... | Expansion DMatrix on 6 new parameters
Need add new parameters and functions in class DMatrix
Support parameters ``missing``, ``feature_names``, ``feature_types``, ``feature_weights``, ``silent``, ``enable_categorical``.
| 1,631,033,063,000 | [] | Feature Request | [
"modin/experimental/xgboost/xgboost.py:DMatrix.__init__",
"modin/experimental/xgboost/xgboost.py:Booster.predict",
"modin/experimental/xgboost/xgboost_ray.py:ModinXGBoostActor._get_dmatrix",
"modin/experimental/xgboost/xgboost_ray.py:ModinXGBoostActor.set_train_data",
"modin/experimental/xgboost/xgboost_ray... | [
"modin/experimental/xgboost/xgboost.py:DMatrix.get_dmatrix_params",
"modin/experimental/xgboost/xgboost.py:DMatrix.feature_names",
"modin/experimental/xgboost/xgboost.py:DMatrix.feature_types",
"modin/experimental/xgboost/xgboost.py:DMatrix.num_row",
"modin/experimental/xgboost/xgboost.py:DMatrix.num_col",
... | 8 | 112 | |
pandas-dev/pandas | pandas-dev__pandas-35029 | 65319af6e563ccbb02fb5152949957b6aef570ef | null | diff --git a/doc/source/whatsnew/v1.2.0.rst b/doc/source/whatsnew/v1.2.0.rst
index 6aff4f4bd41e2..b1257fe893804 100644
--- a/doc/source/whatsnew/v1.2.0.rst
+++ b/doc/source/whatsnew/v1.2.0.rst
@@ -8,6 +8,15 @@ including other versions of pandas.
{{ header }}
+.. warning::
+
+ Previously, the default argument ``e... | diff --git a/pandas/tests/io/excel/test_readers.py b/pandas/tests/io/excel/test_readers.py
index c582a0fa23577..98a55ae39bd77 100644
--- a/pandas/tests/io/excel/test_readers.py
+++ b/pandas/tests/io/excel/test_readers.py
@@ -577,6 +577,10 @@ def test_date_conversion_overflow(self, read_ext):
if pd.read_excel.k... | Deprecate using `xlrd` engine in favor of openpyxl
xlrd is unmaintained and the previous maintainer has asked us to move towards openpyxl. xlrd works now, but *might* have some issues when Python 3.9 or later gets released and changes some elements of the XML parser, as default usage right now throws a `PendingDeprecat... | @WillAyd Should we start with adding `openpyxl` as an engine in [pandas.read_excel](https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.read_excel.html#pandas-read-excel).
Happy to contribute a PR for it.
It is already available just need to make it default over time, so want to raise a FutureWarning w... | 1,593,268,003,000 | [
"IO Excel",
"Blocker",
"Deprecate"
] | Feature Request | [
"pandas/io/excel/_base.py:ExcelFile.__init__"
] | [] | 1 | 113 |
pyca/pyopenssl | pyca__pyopenssl-578 | f189de9becf14840712b01877ebb1f08c26f894c | null | diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 19cebf1e8..56c3c74c8 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -25,6 +25,10 @@ Changes:
- Added ``OpenSSL.X509Store.set_time()`` to set a custom verification time when verifying certificate chains.
`#567 <https://github.com/pyca/pyopenssl/pull/567>`_
+- Cha... | Poor performance on Connection.recv() with large values of bufsiz.
Discovered while investigating kennethreitz/requests#3729.
When allocating a buffer using CFFI's `new` method (as `Connection.recv` does via `_ffi.new("char[]", bufsiz)`, CFFI kindly zeroes that buffer for us. That means this call has a performance c... | So, Armin has pointed out that this actually already exists: `ffi.new_allocator(should_clear_after_alloc=False)("char[]", bufsiz)` should be a solution to the zeroing out of memory. I'm going to investigate it now.
Excellently, that does work. I'll start working on a PR for this tomorrow. | 1,480,282,277,000 | [] | Performance Issue | [
"src/OpenSSL/SSL.py:Connection.recv",
"src/OpenSSL/SSL.py:Connection.recv_into",
"src/OpenSSL/SSL.py:Connection.bio_read",
"src/OpenSSL/SSL.py:Connection.server_random",
"src/OpenSSL/SSL.py:Connection.client_random",
"src/OpenSSL/SSL.py:Connection.master_key",
"src/OpenSSL/SSL.py:Connection._get_finishe... | [] | 7 | 114 | |
matchms/matchms-backup | matchms__matchms-backup-187 | da8debd649798367ed29102b2965a1ab0e6f4938 | null | diff --git a/environment.yml b/environment.yml
index b38d68a..f46d4a2 100644
--- a/environment.yml
+++ b/environment.yml
@@ -7,7 +7,6 @@ dependencies:
- gensim==3.8.0
- matplotlib==3.2.1
- numpy==1.18.1
- - openbabel==3.0.0
- pip==20.0.2
- pyteomics==4.2
- python==3.7
diff --git a/matchms/filtering/d... | diff --git a/tests/test_utils.py b/tests/test_utils.py
index 1918816..7816846 100644
--- a/tests/test_utils.py
+++ b/tests/test_utils.py
@@ -1,18 +1,81 @@
-from matchms.utils import is_valid_inchikey
+from matchms.utils import mol_converter
+from matchms.utils import is_valid_inchi, is_valid_inchikey, is_valid_smiles
+... | openbabel has contagious license
https://tldrlegal.com/license/gnu-general-public-license-v2
| Openbabel seems like a lot of pain. So far I didn't get the time to look at it enough. But I hope that I can soon try to look for alternatives. There are certainly several potential alternatives, but we would have to test them on a large number of conversions to find if they have a similar or better success rate.
So... | 1,588,796,120,000 | [] | Security Vulnerability | [
"matchms/filtering/derive_inchi_from_smiles.py:derive_inchi_from_smiles",
"matchms/filtering/derive_inchikey_from_inchi.py:derive_inchikey_from_inchi",
"matchms/filtering/derive_smiles_from_inchi.py:derive_smiles_from_inchi",
"matchms/utils.py:mol_converter",
"matchms/utils.py:is_valid_inchi"
] | [
"matchms/utils.py:convert_smiles_to_inchi",
"matchms/utils.py:convert_inchi_to_smiles",
"matchms/utils.py:convert_inchi_to_inchikey"
] | 5 | 115 |
latchset/jwcrypto | latchset__jwcrypto-195 | e0249b1161cb8ef7a3a9910948103b816bc0a299 | null | diff --git a/README.md b/README.md
index ccd39c4..1b886cd 100644
--- a/README.md
+++ b/README.md
@@ -16,3 +16,23 @@ Documentation
=============
http://jwcrypto.readthedocs.org
+
+Deprecation Notices
+===================
+
+2020.12.11: The RSA1_5 algorithm is now considered deprecated due to numerous
+implementation... | diff --git a/jwcrypto/tests-cookbook.py b/jwcrypto/tests-cookbook.py
index 40b8d36..dd6f36e 100644
--- a/jwcrypto/tests-cookbook.py
+++ b/jwcrypto/tests-cookbook.py
@@ -1110,7 +1110,8 @@ def test_5_1_encryption(self):
plaintext = Payload_plaintext_5
protected = base64url_decode(JWE_Protected_Header_5_... | The pyca/cryptography RSA PKCS#1 v1.5 is unsafe, making the users of it vulnerable to Bleichenbacher attacks
The API provided by pyca/cryptography is not secure, as documented in their docs:
https://github.com/pyca/cryptography/commit/8686d524b7b890bcbe6132b774bd72a3ae37cf0d
As far as I can tell, it's one of the AP... | At the very least I will add documentation about the problem.
Should we also disable RSA1_5 by default ? At least until pyca provides some option ?
> At the very least I will add documentation about the problem.
and what users that need this mechanism for interoperability are expected to do? rewrite their appli... | 1,607,722,553,000 | [] | Security Vulnerability | [
"jwcrypto/jwt.py:JWT.make_encrypted_token"
] | [] | 1 | 116 |
django/django | django__django-5605 | 6d9c5d46e644a8ef93b0227fc710e09394a03992 | null | diff --git a/django/middleware/csrf.py b/django/middleware/csrf.py
index ba9f63ec3d91..276b31e10fc2 100644
--- a/django/middleware/csrf.py
+++ b/django/middleware/csrf.py
@@ -8,6 +8,7 @@
import logging
import re
+import string
from django.conf import settings
from django.urls import get_callable
@@ -16,8 +17,10... | diff --git a/tests/csrf_tests/test_context_processor.py b/tests/csrf_tests/test_context_processor.py
index 270b3e4771ab..5db0116db0e2 100644
--- a/tests/csrf_tests/test_context_processor.py
+++ b/tests/csrf_tests/test_context_processor.py
@@ -1,6 +1,5 @@
-import json
-
from django.http import HttpRequest
+from django.... | Prevent repetitive output to counter BREACH-type attacks
Description
Currently the CSRF middleware sets the cookie value to the plain value of the token. This makes it possible to try to guess the token by trying longer and longer prefix matches. An effective countermeasure would be to prevent repetitive output from... | ['"Instead of delivering the credential as a 32-byte string, it should be delivered as a 64-byte string. The first 32 bytes are a one-time pad, and the second 32 bytes are encoded using the XOR algorithm between the pad and the "real" token." \u200bhttps://github.com/rails/rails/pull/11729 via \u200bArs Technica', 1375... | 1,446,914,517,000 | [] | Security Vulnerability | [
"django/middleware/csrf.py:_get_new_csrf_key",
"django/middleware/csrf.py:get_token",
"django/middleware/csrf.py:rotate_token",
"django/middleware/csrf.py:_sanitize_token",
"django/middleware/csrf.py:CsrfViewMiddleware.process_view",
"django/middleware/csrf.py:CsrfViewMiddleware.process_response"
] | [
"django/middleware/csrf.py:_get_new_csrf_string",
"django/middleware/csrf.py:_salt_cipher_secret",
"django/middleware/csrf.py:_unsalt_cipher_token",
"django/middleware/csrf.py:_get_new_csrf_token",
"django/middleware/csrf.py:_compare_salted_tokens"
] | 6 | 117 |
jax-ml/jax | jax-ml__jax-25114 | df6758f021167b1c0b85f5d6e4986f6f0d2a1169 | null | diff --git a/CHANGELOG.md b/CHANGELOG.md
index ce8b040439c0..b5758d107077 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -79,6 +79,7 @@ When releasing, please add the new-release-boilerplate to docs/pallas/CHANGELOG.
* {func}`jax.lax.linalg.eig` and the related `jax.numpy` functions
({func}`jax.numpy.linalg.ei... | Allow specifying `exec_time_optimization_effort` and `memory_fitting_effort` via CLI.
New compiler options (see title) have recently been [exposed](https://github.com/jax-ml/jax/issues/24625) in JAX.
To use them users have to change their Python code like this:
```
jax.jit(f, compiler_options={
"exec_time_opt... | 1,732,629,502,000 | [
"pull ready"
] | Feature Request | [
"jax/_src/compiler.py:get_compile_options"
] | [] | 1 | 118 | ||
justin13601/ACES | justin13601__ACES-145 | 89291a01522d2c23e45aa0ee6a09c32645f4d1b4 | null | diff --git a/.github/workflows/code-quality-main.yaml b/.github/workflows/code-quality-main.yaml
index d3369699..691b47c7 100644
--- a/.github/workflows/code-quality-main.yaml
+++ b/.github/workflows/code-quality-main.yaml
@@ -13,10 +13,16 @@ jobs:
steps:
- name: Checkout
- uses: actions/checkout@v... | diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index c22ef161..4e51b115 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -17,16 +17,16 @@ jobs:
steps:
- name: Checkout
- uses: actions/checkout@v3
+ uses: actions/checkout@v4
- name... | Task definition matters in terms of memory usage
As suggested by @Oufattole, this kind of config seems to use excessive amounts of memory (more than 400 GB on MIMIC-IV in my case)
using regex mitigates this:
.
Basically, each time a predicate is defined in a configuration file, a column is created which corresponds to that pr... | 1,729,818,802,000 | [] | Performance Issue | [
"src/aces/config.py:TaskExtractorConfig.load",
"src/aces/config.py:TaskExtractorConfig._initialize_predicates",
"src/aces/predicates.py:get_predicates_df",
"src/aces/query.py:query"
] | [] | 4 | 119 |
aio-libs/aiohttp | aio-libs__aiohttp-7829 | c0377bf80e72134ad7bf29aa847f0301fbdb130f | null | diff --git a/CHANGES/7829.misc b/CHANGES/7829.misc
new file mode 100644
index 00000000000..9eb060f4713
--- /dev/null
+++ b/CHANGES/7829.misc
@@ -0,0 +1,3 @@
+Improved URL handler resolution time by indexing resources in the UrlDispatcher.
+For applications with a large number of handlers, this should increase performan... | diff --git a/tests/test_urldispatch.py b/tests/test_urldispatch.py
index 5f5687eacc3..adb1e52e781 100644
--- a/tests/test_urldispatch.py
+++ b/tests/test_urldispatch.py
@@ -1264,10 +1264,17 @@ async def test_prefixed_subapp_overlap(app: Any) -> None:
subapp2.router.add_get("/b", handler2)
app.add_subapp("/ss"... | UrlDispatcher improvements
### Describe the bug
The UrlDispatcher currently has to do a linear search to dispatch urls which has an average time complexity of `O(n)`. This means that urls that are registered first can be found faster than urls that are registered later.
### To Reproduce
Results
```
% pyt... | 1,699,830,964,000 | [
"bot:chronographer:provided"
] | Performance Issue | [
"aiohttp/web_urldispatcher.py:PrefixedSubAppResource.__init__",
"aiohttp/web_urldispatcher.py:PrefixedSubAppResource.add_prefix",
"aiohttp/web_urldispatcher.py:PrefixedSubAppResource.resolve",
"aiohttp/web_urldispatcher.py:UrlDispatcher.resolve",
"aiohttp/web_urldispatcher.py:UrlDispatcher.__init__",
"aio... | [
"aiohttp/web_urldispatcher.py:PrefixedSubAppResource._add_prefix_to_resources",
"aiohttp/web_urldispatcher.py:UrlDispatcher._get_resource_index_key",
"aiohttp/web_urldispatcher.py:UrlDispatcher.index_resource",
"aiohttp/web_urldispatcher.py:UrlDispatcher.unindex_resource"
] | 6 | 121 | |
jupyterhub/oauthenticator | jupyterhub__oauthenticator-764 | f4da2e8eedeec009f2d1ac749b6da2ee160652b0 | null | diff --git a/oauthenticator/google.py b/oauthenticator/google.py
index f06f6aca..28b76d48 100644
--- a/oauthenticator/google.py
+++ b/oauthenticator/google.py
@@ -14,6 +14,7 @@
class GoogleOAuthenticator(OAuthenticator, GoogleOAuth2Mixin):
user_auth_state_key = "google_user"
+ _service_credentials = {}
... | diff --git a/oauthenticator/tests/test_google.py b/oauthenticator/tests/test_google.py
index 4c3a9e0c..070de014 100644
--- a/oauthenticator/tests/test_google.py
+++ b/oauthenticator/tests/test_google.py
@@ -3,6 +3,7 @@
import logging
import re
from unittest import mock
+from unittest.mock import AsyncMock
from py... | The google authenticator's calls to check groups is done sync, can it be made async?
Quickly written, I can fill this in in more detail later.
| 1,727,389,390,000 | [
"maintenance"
] | Performance Issue | [
"oauthenticator/google.py:GoogleOAuthenticator.update_auth_model",
"oauthenticator/google.py:GoogleOAuthenticator._service_client",
"oauthenticator/google.py:GoogleOAuthenticator._setup_service",
"oauthenticator/google.py:GoogleOAuthenticator._fetch_member_groups"
] | [
"oauthenticator/google.py:GoogleOAuthenticator._get_service_credentials",
"oauthenticator/google.py:GoogleOAuthenticator._is_token_valid",
"oauthenticator/google.py:GoogleOAuthenticator._setup_service_credentials"
] | 4 | 122 | |
PlasmaPy/PlasmaPy | PlasmaPy__PlasmaPy-2542 | db62754e6150dc841074afe2e155f21a806e7f1b | null | diff --git a/changelog/2542.internal.rst b/changelog/2542.internal.rst
new file mode 100644
index 0000000000..628869c5d5
--- /dev/null
+++ b/changelog/2542.internal.rst
@@ -0,0 +1,1 @@
+Refactored `~plasmapy.formulary.lengths.gyroradius` to reduce the cognitive complexity of the function.
diff --git a/plasmapy/formular... | Reduce cognitive complexity of `gyroradius`
Right now [`plasmapy.formulary.lengths.gyroradius`](https://github.com/PlasmaPy/PlasmaPy/blob/fc12bbd286ae9db82ab313d8c380808b814a462c/plasmapy/formulary/lengths.py#LL102C5-L102C15) has several nested conditionals. As a consequence, the code for `gyroradius` has high [cognit... | Come to think of it, once PlasmaPy goes Python 3.10+ (for our first release after April 2024), we might be able to use [structural pattern matching](https://docs.python.org/3/whatsnew/3.10.html#pep-634-structural-pattern-matching).
Another possibility here would be to use [guard clauses](https://medium.com/lemon-c... | 1,709,064,730,000 | [
"plasmapy.formulary"
] | Performance Issue | [
"plasmapy/formulary/lengths.py:gyroradius"
] | [] | 1 | 123 | |
scikit-learn/scikit-learn | scikit-learn__scikit-learn-24076 | 30bf6f39a7126a351db8971d24aa865fa5605569 | null | diff --git a/.gitignore b/.gitignore
index f6250b4d5f580..89600846100a8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -90,6 +90,7 @@ sklearn/metrics/_dist_metrics.pyx
sklearn/metrics/_dist_metrics.pxd
sklearn/metrics/_pairwise_distances_reduction/_argkmin.pxd
sklearn/metrics/_pairwise_distances_reduction/_argkmin.pyx
... | diff --git a/sklearn/metrics/tests/test_pairwise_distances_reduction.py b/sklearn/metrics/tests/test_pairwise_distances_reduction.py
index ad0ddbc60e9bd..7355dfd6ba912 100644
--- a/sklearn/metrics/tests/test_pairwise_distances_reduction.py
+++ b/sklearn/metrics/tests/test_pairwise_distances_reduction.py
@@ -13,10 +13,1... | knn predict unreasonably slow b/c of use of scipy.stats.mode
```python
import numpy as np
from sklearn.datasets import make_blobs
from sklearn.neighbors import KNeighborsClassifier
X, y = make_blobs(centers=2, random_state=4, n_samples=30)
knn = KNeighborsClassifier(algorithm='kd_tree').fit(X, y)
x_min, x_max... | @amueller Do you mean something like this
```
max(top_k, key = list(top_k).count)
```
That isn't going to apply to every row, and involves n_classes passes over
each. Basically because we know the set of class labels, we shouldn't need
to be doing unique.
Yes, we could construct a CSR sparse matrix and sum_duplic... | 1,659,396,563,000 | [
"Performance",
"module:metrics",
"module:neighbors",
"cython"
] | Performance Issue | [
"sklearn/neighbors/_base.py:NeighborsBase._fit",
"sklearn/neighbors/_classification.py:KNeighborsClassifier.predict",
"sklearn/neighbors/_classification.py:KNeighborsClassifier.predict_proba"
] | [
"sklearn/metrics/_pairwise_distances_reduction/_dispatcher.py:ArgKminClassMode.is_usable_for",
"sklearn/metrics/_pairwise_distances_reduction/_dispatcher.py:ArgKminClassMode.compute",
"sklearn/neighbors/_classification.py:_adjusted_metric"
] | 3 | 125 |
fractal-analytics-platform/fractal-tasks-core | fractal-analytics-platform__fractal-tasks-core-889 | 5c5ccaff10eb5508bae321c61cb5d0741a36a91a | null | diff --git a/CHANGELOG.md b/CHANGELOG.md
index f7aea0d58..35082befe 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,9 @@
**Note**: Numbers like (\#123) point to closed Pull Requests on the fractal-tasks-core repository.
+# 1.4.1
+
+* Tasks:
+ * Remove overlap checking for output ROIs in Cellpose task to a... | diff --git a/tests/tasks/test_workflows_cellpose_segmentation.py b/tests/tasks/test_workflows_cellpose_segmentation.py
index 2c3c04216..1ce511d30 100644
--- a/tests/tasks/test_workflows_cellpose_segmentation.py
+++ b/tests/tasks/test_workflows_cellpose_segmentation.py
@@ -602,49 +602,6 @@ def test_workflow_bounding_box... | Review/optimize use of `get_overlapping_pairs_3D` in Cellpose task
Branching from #764 (fixed in principle with #778)
After a fix, it'd be useful to have a rough benchmark of `get_overlapping_pairs_3D for` one of those many-labels cases (say 1000 labels for a given `i_ROI`). Since this function does nothing else tha... | Another thing to consider here:
This (as well as the original implementation) will only check for potential bounding box overlaps within a given ROI that's being processed, right?
A future improvement may be to check for overlaps across ROIs as well, as in theory, they could also overlap. Given that this is just fo... | 1,736,344,999,000 | [] | Performance Issue | [
"fractal_tasks_core/tasks/cellpose_segmentation.py:cellpose_segmentation"
] | [] | 1 | 126 |
OpenEnergyPlatform/open-MaStR | OpenEnergyPlatform__open-MaStR-598 | bd44ce26986a0c41b25250951a4a9a391723d690 | null | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 42432fd8..404fb9ac 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -13,6 +13,8 @@ and the versioning aims to respect [Semantic Versioning](http://semver.org/spec/
### Changed
- Repair Header image in Readme
[#587](https://github.com/OpenEnergyPlatform/open-MaStR/pull/... | diff --git a/tests/xml_download/test_utils_write_to_database.py b/tests/xml_download/test_utils_write_to_database.py
index dc5aaacd..e72e5501 100644
--- a/tests/xml_download/test_utils_write_to_database.py
+++ b/tests/xml_download/test_utils_write_to_database.py
@@ -1,25 +1,35 @@
+import os
+import sqlite3
import sys
... | Increase parsing speed
This task contains several steps:
1. Search different ways that might increase parsing speed. Parsing is done right now by the `pandas.read_xml` method [here](https://github.com/OpenEnergyPlatform/open-MaStR/blob/d17a92c17912f7f96814d309859dc495f942c07a/open_mastr/xml_download/utils_write_to_d... | Hi! I started working on this task and decided to change the steps slightly:
1. Construct the benchmark
- Use the Marktstammdatenregister to construct a few datasets of various size - ✅ ([link](https://github.com/AlexandraImbrisca/open-MaStR/tree/develop/benchmark))
- Create a script to automate the calcu... | 1,736,704,440,000 | [] | Performance Issue | [
"open_mastr/xml_download/utils_write_to_database.py:write_mastr_xml_to_database",
"open_mastr/xml_download/utils_write_to_database.py:is_table_relevant",
"open_mastr/xml_download/utils_write_to_database.py:create_database_table",
"open_mastr/xml_download/utils_write_to_database.py:cast_date_columns_to_datetim... | [
"open_mastr/xml_download/utils_write_to_database.py:extract_xml_table_name",
"open_mastr/xml_download/utils_write_to_database.py:extract_sql_table_name",
"open_mastr/xml_download/utils_write_to_database.py:cast_date_columns_to_string",
"open_mastr/xml_download/utils_write_to_database.py:read_xml_file",
"ope... | 10 | 127 |
kedro-org/kedro | kedro-org__kedro-4367 | 70734ce00ee46b58c85b4cf04afbe89d32c06758 | null | diff --git a/RELEASE.md b/RELEASE.md
index 7af26f6ca4..c19418f0ca 100644
--- a/RELEASE.md
+++ b/RELEASE.md
@@ -2,6 +2,7 @@
## Major features and improvements
* Implemented `KedroDataCatalog.to_config()` method that converts the catalog instance into a configuration format suitable for serialization.
+* Improve Omeg... | Improve OmegaConfigLoader performance when global/variable interpolations are involved
## Description
Extending on the investigation in #3893 , OmegaConfigLoader lags in resolving catalog configurations when global/variable interpolations are involved.
## Context
**Some previous observations:**
https://github... | During the investigation, I found that there was a slow bit in `_set_globals_value`. I didn't spent enough time to fix it, but with a quick fix it improves roughly from 1.5s -> 0.9s, but there are probably more.
Particularly, there is an obvious slow path `global_oc` get created and destroyed for every reference of `$g... | 1,733,266,369,000 | [] | Performance Issue | [
"kedro/config/omegaconf_config.py:OmegaConfigLoader.__init__",
"kedro/config/omegaconf_config.py:OmegaConfigLoader.load_and_merge_dir_config",
"kedro/config/omegaconf_config.py:OmegaConfigLoader._get_globals_value",
"kedro/config/omegaconf_config.py:OmegaConfigLoader._get_runtime_value"
] | [] | 4 | 128 | |
UCL/TLOmodel | UCL__TLOmodel-1524 | d5e6d31ab27549dc5671ace98c68d11d46d40890 | null | diff --git a/src/tlo/methods/contraception.py b/src/tlo/methods/contraception.py
index ab6c633f4c..09cb394804 100644
--- a/src/tlo/methods/contraception.py
+++ b/src/tlo/methods/contraception.py
@@ -1146,12 +1146,12 @@ def __init__(self, module, person_id, new_contraceptive):
self.TREATMENT_ID = "Contracepti... | Population dataframe accesses in `HSI_Contraception_FamilyPlanningAppt.EXPECTED_APPT_FOOTPRINT` are performance bottleneck
Look at the most recent successful profiling run results
https://github-pages.ucl.ac.uk/TLOmodel-profiling/_static/profiling_html/schedule_1226_dbf33d69edadbacdc2dad1fc32c93eb771b03f9b.html
c... | @BinglingICL, I think it is okay to set the EXPECTED_APPT_FOOTPRINT with the same logic when HSI is scheduled instead of when it is run, isn't it?
> [@BinglingICL](https://github.com/BinglingICL), I think it is okay to set the EXPECTED_APPT_FOOTPRINT with the same logic when HSI is scheduled instead of when it is run, ... | 1,732,204,946,000 | [] | Performance Issue | [
"src/tlo/methods/contraception.py:HSI_Contraception_FamilyPlanningAppt.EXPECTED_APPT_FOOTPRINT",
"src/tlo/methods/contraception.py:HSI_Contraception_FamilyPlanningAppt.__init__",
"src/tlo/methods/contraception.py:HSI_Contraception_FamilyPlanningAppt.apply"
] | [
"src/tlo/methods/contraception.py:HSI_Contraception_FamilyPlanningAppt._get_appt_footprint"
] | 3 | 129 | |
Deltares/imod-python | Deltares__imod-python-1159 | 4f3b71675708c5a832fb78e05f679bb89158f95d | null | diff --git a/.gitignore b/.gitignore
index fd95f7d8d..28f9b76a9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -141,5 +141,4 @@ examples/data
.pixi
/imod/tests/mydask.png
-/imod/tests/unittest_report.xml
-/imod/tests/examples_report.xml
+/imod/tests/*_report.xml
diff --git a/docs/api/changelog.rst b/docs/api/changelog... | diff --git a/imod/tests/test_mf6/test_mf6_chd.py b/imod/tests/test_mf6/test_mf6_chd.py
index ef0a04108..c3b96b982 100644
--- a/imod/tests/test_mf6/test_mf6_chd.py
+++ b/imod/tests/test_mf6/test_mf6_chd.py
@@ -238,6 +238,7 @@ def test_from_imod5_shd(imod5_dataset, tmp_path):
chd_shd.write("chd_shd", [1], write_cont... | Bottlenecks writing HFBs LHM
https://github.com/Deltares/imod-python/pull/1157 considerably improves the speed with which the LHM is written: From 34 minutes to 12.5 minutes. This is still slower than expected however. Based on profiling, I've identified 3 main bottlenecks:
- 4.5 minutes: ``xu.DataArray.from_structu... | 1,723,823,927,000 | [] | Performance Issue | [
"imod/mf6/simulation.py:Modflow6Simulation.from_imod5_data",
"imod/schemata.py:scalar_None",
"imod/typing/grid.py:as_ugrid_dataarray"
] | [
"imod/typing/grid.py:GridCache.__init__",
"imod/typing/grid.py:GridCache.get_grid",
"imod/typing/grid.py:GridCache.remove_first",
"imod/typing/grid.py:GridCache.clear"
] | 3 | 130 | |
Project-MONAI/MONAI | Project-MONAI__MONAI-8123 | 052dbb4439165bfc1fc3132fadb0955587e4d30e | null | diff --git a/monai/networks/nets/segresnet_ds.py b/monai/networks/nets/segresnet_ds.py
index 1ac5a79ee3..098e490511 100644
--- a/monai/networks/nets/segresnet_ds.py
+++ b/monai/networks/nets/segresnet_ds.py
@@ -508,8 +508,10 @@ def forward( # type: ignore
outputs: list[torch.Tensor] = []
outputs_au... | Optimize the VISTA3D latency
**Is your feature request related to a problem? Please describe.**
The VISTA3D is a very brilliant model for everything segmentation in a medical image. However it suffers a slowdown [issue](https://github.com/Project-MONAI/model-zoo/tree/dev/models/vista3d/docs#inference-gpu-benchmarks) w... | 1,727,686,856,000 | [] | Performance Issue | [
"monai/networks/nets/segresnet_ds.py:SegResNetDS2.forward",
"monai/networks/nets/vista3d.py:ClassMappingClassify.forward"
] | [] | 2 | 131 | ||
Qiskit/qiskit | Qiskit__qiskit-13052 | 9898979d2947340514adca7121ed8eaea75df77f | null | diff --git a/crates/accelerate/src/filter_op_nodes.rs b/crates/accelerate/src/filter_op_nodes.rs
new file mode 100644
index 000000000000..7c41391f3788
--- /dev/null
+++ b/crates/accelerate/src/filter_op_nodes.rs
@@ -0,0 +1,63 @@
+// This code is part of Qiskit.
+//
+// (C) Copyright IBM 2024
+//
+// This code is licens... | Port `FilterOpNodes` to Rust
Port `FilterOpNodes` to Rust
| 1,724,882,933,000 | [
"performance",
"Changelog: None",
"Rust",
"mod: transpiler"
] | Feature Request | [
"qiskit/transpiler/passes/utils/filter_op_nodes.py:FilterOpNodes.run"
] | [] | 1 | 133 | ||
ivadomed/ivadomed | ivadomed__ivadomed-1081 | dee79e6bd90b30095267a798da99c4033cc5991b | null | diff --git a/docs/source/configuration_file.rst b/docs/source/configuration_file.rst
index 8e9169961..ab31be8a5 100644
--- a/docs/source/configuration_file.rst
+++ b/docs/source/configuration_file.rst
@@ -2278,8 +2278,28 @@ Postprocessing
Evaluation Parameters
---------------------
-Dict. Parameters to get object d... | Time issue when running `--test` on large microscopy images
**Disclaimer**
This issue is based on preliminary observations and does not contain a lot of details/examples at the moment.
## Issue description
I tried running the `--test` command on large microscopy images on `rosenberg`, and it takes a very long ti... | Update: I ran the same test again to have a little bit more details.
Turns out, the `evaluate` function took ~5h30min to compute metrics on my 2 images 😬.
I also ran the command with a cProfile (... | 1,645,136,481,000 | [
"bug"
] | Performance Issue | [
"ivadomed/evaluation.py:evaluate",
"ivadomed/evaluation.py:Evaluation3DMetrics.__init__",
"ivadomed/evaluation.py:Evaluation3DMetrics.get_ltpr",
"ivadomed/evaluation.py:Evaluation3DMetrics.get_lfdr",
"ivadomed/main.py:run_command",
"ivadomed/metrics.py:get_metric_fns"
] | [] | 6 | 134 | |
zulip/zulip | zulip__zulip-31168 | 3d58a7ec0455ba609955c13470d31854687eff7a | null | diff --git a/zerver/lib/users.py b/zerver/lib/users.py
index 3b00d4187ff2d..cb24813fb1a6a 100644
--- a/zerver/lib/users.py
+++ b/zerver/lib/users.py
@@ -10,6 +10,7 @@
from django.conf import settings
from django.core.exceptions import ValidationError
from django.db.models import Q, QuerySet
+from django.db.models.fu... | diff --git a/zerver/tests/test_subs.py b/zerver/tests/test_subs.py
index f4a3d0b3be9bc..da7dfe34e1660 100644
--- a/zerver/tests/test_subs.py
+++ b/zerver/tests/test_subs.py
@@ -2684,7 +2684,7 @@ def test_realm_admin_remove_multiple_users_from_stream(self) -> None:
for name in ["cordelia", "prospero", "iago... | Make creating streams faster in large organizations
In large organizations (like chat.zulip.org), creating a stream can be very slow (seconds to tens of seconds). We should fix this.
It should be possible to reproduce this by creating 20K users with `manage.py populate_db --extra-users` in a development environment.... | Hello @zulip/server-streams members, this issue was labeled with the "area: stream settings" label, so you may want to check it out!
<!-- areaLabelAddition -->
Hello @zulip/server-streams members, this issue was labeled with the "area: stream settings" label, so you may want to check it out!
<!-- areaLabelAddition -... | 1,722,342,135,000 | [
"area: channel settings",
"priority: high",
"size: XL",
"post release",
"area: performance"
] | Performance Issue | [
"zerver/views/streams.py:principal_to_user_profile",
"zerver/views/streams.py:remove_subscriptions_backend",
"zerver/views/streams.py:add_subscriptions_backend"
] | [
"zerver/lib/users.py:bulk_access_users_by_email",
"zerver/lib/users.py:bulk_access_users_by_id",
"zerver/views/streams.py:bulk_principals_to_user_profiles"
] | 3 | 135 |
vllm-project/vllm | vllm-project__vllm-7209 | 9855aea21b6aec48b12cef3a1614e7796b970a73 | null | diff --git a/vllm/core/evictor.py b/vllm/core/evictor.py
index ed7e06cab2996..44adc4158abec 100644
--- a/vllm/core/evictor.py
+++ b/vllm/core/evictor.py
@@ -1,6 +1,7 @@
import enum
+import heapq
from abc import ABC, abstractmethod
-from typing import OrderedDict, Tuple
+from typing import Dict, List, Tuple
class... | [Bug]: Prefix Caching in BlockSpaceManagerV1 and BlockSpaceManagerV2 Increases Time to First Token(TTFT) and Slows Down System
### Your current environment
```text
PyTorch version: 2.3.1+cu121
Is debug build: False
CUDA used to build PyTorch: 12.1
ROCM used to build PyTorch: N/A
OS: Ubuntu 22.04.3 LTS (x86_64... | I meet the problem when enabling prefix caching in BlockSpaceManagerV2 ... | 1,722,960,271,000 | [
"ready"
] | Performance Issue | [
"vllm/core/evictor.py:LRUEvictor.__init__",
"vllm/core/evictor.py:LRUEvictor.evict",
"vllm/core/evictor.py:LRUEvictor.add"
] | [
"vllm/core/evictor.py:LRUEvictor._cleanup_if_necessary",
"vllm/core/evictor.py:LRUEvictor._cleanup"
] | 3 | 136 | |
xCDAT/xcdat | xCDAT__xcdat-689 | 584fccee91f559089e4bb24c9cc45983b998bf4a | null | diff --git a/.vscode/xcdat.code-workspace b/.vscode/xcdat.code-workspace
index 906eb68e..8eaa4e47 100644
--- a/.vscode/xcdat.code-workspace
+++ b/.vscode/xcdat.code-workspace
@@ -61,7 +61,7 @@
"configurations": [
{
"name": "Python: Current File",
- "type": "python",... | diff --git a/tests/test_temporal.py b/tests/test_temporal.py
index 6e2d6049..e5489b1b 100644
--- a/tests/test_temporal.py
+++ b/tests/test_temporal.py
@@ -121,7 +121,7 @@ def test_averages_for_yearly_time_series(self):
},
)
- assert result.identical(expected)
+ xr.testing.assert_id... | [Enhancement]: Temporal averaging performance
### Is your feature request related to a problem?
This may not be a high priority issue, but I think it is worthwhile to document here:
When refactoring e3sm_diags with xcdat, I was working on using temporal.climatology operation to get annual cycle of a data stream whi... | Possible next steps:
1. Try `flox` with e3sm_diags and xCDAT temporal APIs
2. Reference #490
3. Analyze codebase for other bottlenecks besides grouping
Regarding to results: Case2,3,4 are identical, while, xcdat result from Case 1 is slightly off.
```
Case 1: [1.63433977e-08 1.73700556e-08 2.73745702e-08 3.220... | 1,724,972,659,000 | [
"type: enhancement"
] | Performance Issue | [
"xcdat/temporal.py:TemporalAccessor.departures",
"xcdat/temporal.py:TemporalAccessor._group_average",
"xcdat/temporal.py:TemporalAccessor._get_weights",
"xcdat/temporal.py:TemporalAccessor._group_data",
"xcdat/temporal.py:TemporalAccessor._label_time_coords",
"xcdat/temporal.py:TemporalAccessor._keep_weig... | [
"xcdat/temporal.py:TemporalAccessor._calculate_departures"
] | 6 | 137 |
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