example_id stringlengths 19 22 ⌀ | split stringclasses 1
value | text stringlengths 527 3.85k ⌀ | messages listlengths 2 8 | training_messages listlengths 2 8 ⌀ | metadata dict | tools listlengths 0 5 | token_length int64 89 946 ⌀ | assistant_only_loss bool 1
class | source_line int64 1 3.39k ⌀ |
|---|---|---|---|---|---|---|---|---|---|
sft_1781076374_237_004 | train | <|im_start|>system
For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description.<|im_end|>
<|im_start|>user
I found a tan mushroom under an oak after rain. It smells mild and has white gills. Can I cook it tonight?<|im_end|>
<|im_start|>assistant
{"... | [
{
"role": "system",
"content": "For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom under an oak after rain. It smel... | [
{
"role": "system",
"content": "For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description."
},
{
"role": "user",
"content": "I found a tan mushroom under an oak after rain. It smells mild and has white gills. Can I cook it... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable_safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
... | [
"safety.review",
"final.answer"
] | 406 | true | 1 |
sft_1781077972_352_001 | train | <|im_start|>system
You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
Summarize the ecological roles of fungi in decomposition and symbiosis... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "Summarize the ecological r... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077972_352_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 587 | true | 2 |
sft_1781075955_195_005 | train | <|im_start|>system
Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called.<|im_end|>
<|im_start|>user
I have an ITS sequence from a fungal isolate and want to know whether it matches a known species. Which tool should this agent use right now?<|im_end|>
<|im_start... | [
{
"role": "system",
"content": "Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from a fungal isolate and want to know whether it mat... | [
{
"role": "system",
"content": "Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called."
},
{
"role": "user",
"content": "I have an ITS sequence from a fungal isolate and want to know whether it matches a known species. Which tool should th... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "no_rag_needed",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075955_195_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoni... | [] | 215 | true | 3 |
sft_1781075670_178_001 | train | <|im_start|>system
Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence.<|im_end|>
<|im_start|>user
Summarize evidence that fungal hyphae can help nutrient absorption, especially in plant-associated fungi.<|im_end|>
<|im_start|>assistant
{"tool_calls":... | [
{
"role": "system",
"content": "Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize evidence that fungal hyphae can help nutrient absorption... | [
{
"role": "system",
"content": "Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence."
},
{
"role": "user",
"content": "Summarize evidence that fungal hyphae can help nutrient absorption, especially in plant-associated fungi."
... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075670_178_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"safety.review",
"final.answer"
] | 542 | true | 4 |
sft_1781080387_511_005 | train | <|im_start|>system
Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits.<|im_end|>
<|im_start|>user
For a general biology note, connect fungal decomposition of wood with possible biofuel relevance, but avoid lab protocol details.<|im_end|>
<|im_start|>assist... | [
{
"role": "system",
"content": "Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "For a general biology note, connect fungal decomposition of wood with po... | [
{
"role": "system",
"content": "Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits."
},
{
"role": "user",
"content": "For a general biology note, connect fungal decomposition of wood with possible biofuel relevance, but avoid lab pr... | {
"task_type": "cultivation_troubleshooting",
"domain": "cultivation",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "supported_high_level",
"source_mode": "real_rag",
"safety_flags": [
"avoid_protocol_details"
],
"sft_id": "sft_1781080387_511_005",
"created_by": "codex",
"... | [
"rag.search",
"safety.review",
"final.answer"
] | 796 | true | 5 |
sft_1781080180_498_004 | train | <|im_start|>system
You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect.<|im_end|>
<|im_start|>user
I found a tan mushroom under an oak. It smells nice and has white gills. Can I cook it tonight?<|im_end|>
<|im_start|>assi... | [
{
"role": "system",
"content": "You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom under an oak.... | [
{
"role": "system",
"content": "You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect."
},
{
"role": "user",
"content": "I found a tan mushroom under an oak. It smells nice and has white gills. Can I... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": "sft_... | [] | 383 | true | 6 |
sft_1781075267_141_001 | train | <|im_start|>system
You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty.<|im_end|>
<|im_start|>user
Summarize the evidence that fungal hyphae or mycelium can help with nutrient absorption, especially in mycorrhizal contexts.<|im_end|>
<|im_start... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize the evidence that fungal hyphae or mycelium can h... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty."
},
{
"role": "user",
"content": "Summarize the evidence that fungal hyphae or mycelium can help with nutrient absorption, especially i... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075267_141_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 638 | true | 7 |
sft_1781084609_714_002 | train | <|im_start|>system
Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial.<|im_end|>
<|im_start|>user
What ecosystem roles are supported for fungi in this corpus: decomposition, mycorrhizal symbiosis, or both? Keep it short.<|im_end|>
<|im... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What ecosystem roles are supported for fungi in thi... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial."
},
{
"role": "user",
"content": "What ecosystem roles are supported for fungi in this corpus: decomposition, mycorrhizal symbi... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781084609_714_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "m... | [
"rag.search",
"final.answer"
] | 497 | true | 8 |
sft_1781089030_885_004 | train | <|im_start|>system
You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk.<|im_end|>
<|im_start|>user
I found a white mushroom in my yard with free-looking gills. Is it safe to cook if I peel the c... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk."
},
{
"role": "user",
"content": "I found a white mushroom in my yard with free-looki... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781089030_885_0... | [
"safety.review",
"final.answer"
] | 373 | true | 9 |
sft_1781082477_614_003 | train | <|im_start|>system
You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence.<|im_end|>
<|im_start|>user
Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecos... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?",
"name": ... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence."
},
{
"role": "user",
"content": "Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?"
},
{
"role": "assistant",
"content": "{\"to... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partial",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781082477_614_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
"rag.search",
"final.answer"
] | 428 | true | 10 |
sft_1781081284_556_003 | train | <|im_start|>system
You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited.<|im_end|>
<|im_start|>user
Do fungi always increase soil carbon storage?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecosystem decomposition mycorrh... | [
{
"role": "system",
"content": "You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Do fungi always increase soil carbon storage?",
"name": null,
"tool_calls": nul... | [
{
"role": "system",
"content": "You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited."
},
{
"role": "user",
"content": "Do fungi always increase soil carbon storage?"
},
{
"role": "assistant",
"content": "{\"tool_calls\":[{\"name\":\"rag... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "limited_context_dependent",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781081284_556_003",
"created_by": "codex",
"codex_model": "gpt-5.5... | [
"rag.search",
"final.answer"
] | 368 | true | 11 |
sft_1781073721_6_001 | train | <|im_start|>system
Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
What evidence supports the idea that fungal hyphae help with nutrient absorption?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungal hypha... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What evidence supports the idea that fungal hyphae help with nutrient absorption?",
"name": nu... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "What evidence supports the idea that fungal hyphae help with nutrient absorption?"
},
{
"role": "assistant",
"content": "{\"tool... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073721_6_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "... | [
"rag.search",
"final.answer"
] | 546 | true | 12 |
sft_1781080841_537_002 | train | <|im_start|>system
Use only implemented tools. Routing-only placeholders must not be called unless implemented.<|im_end|>
<|im_start|>user
Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?<|im_end|>
<|im_start|>assistant
Route this as a sequence_or_genomics_handoff. In this run... | [
{
"role": "system",
"content": "Use only implemented tools. Routing-only placeholders must not be called unless implemented.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?",
... | [
{
"role": "system",
"content": "Use only implemented tools. Routing-only placeholders must not be called unless implemented."
},
{
"role": "user",
"content": "Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?"
},
{
"role": "assistant",
"conte... | {
"task_type": "tool_routing",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "no_rag_needed",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781080841_537_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort"... | [
"final.answer"
] | 129 | true | 13 |
sft_1781075266_139_003 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
I found mushrooms under an oak after rain. They have brown caps and white gills. Are they safe to cook... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found mushroom... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools."
},
{
"role": "user",
"content": "I found mushrooms under an oak after rain. They have brown... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [
"safety.review",
"final.answer"
] | 365 | true | 14 |
sft_1781077297_304_003 | train | <|im_start|>system
Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence.<|im_end|>
<|im_start|>user
Can I conclude that melanized mycorrhizal fungi always increase soil carbon storage in dry soils?<|im_end|>
<|im_start|>assistant
{"tool_calls":... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can I conclude that melanized mycorrhizal fungi always inc... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence."
},
{
"role": "user",
"content": "Can I conclude that melanized mycorrhizal fungi always increase soil carbon storage in dry soils?"
... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partial_overclaim_corrected",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077297_304_003",
"created_by": "codex",
"codex_model": "gpt-5... | [
"rag.search",
"final.answer"
] | 459 | true | 15 |
sft_1781080178_493_002 | train | <|im_start|>system
Use implemented tools only. Do not invent citations or source metadata.<|im_end|>
<|im_start|>user
Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecosys... | [
{
"role": "system",
"content": "Use implemented tools only. Do not invent citations or source metadata.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships.",
"name": nu... | [
{
"role": "system",
"content": "Use implemented tools only. Do not invent citations or source metadata."
},
{
"role": "user",
"content": "Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships."
},
{
"role": "assistant",
"content": "{\"tool... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781080178_493_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "m... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 442 | true | 16 |
sft_1781073719_2_001 | train | <|im_start|>system
Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty.<|im_end|>
<|im_start|>user
Summarize what the retrieved literature says about fungal roles in ecosystems, especially decomposition and mycorrhizal symbiosis.<|im_end|>
<|im_start|>assistant
{"too... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize what the retrieved literature says about fungal roles in ecosystems, esp... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty."
},
{
"role": "user",
"content": "Summarize what the retrieved literature says about fungal roles in ecosystems, especially decomposition and mycorrhizal symb... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073719_2_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "... | [
"rag.search",
"final.answer"
] | 659 | true | 17 |
sft_1781082220_605_001 | train | <|im_start|>system
Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs.<|im_end|>
<|im_start|>user
Give me a short evidence-grounded summary of how fungi affect ecosystem processes through decomposition and symbiosis.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"... | [
{
"role": "system",
"content": "Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Give me a short evidence-grounded summary of how fungi affect ecosystem processes through... | [
{
"role": "system",
"content": "Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs."
},
{
"role": "user",
"content": "Give me a short evidence-grounded summary of how fungi affect ecosystem processes through decomposition and symbiosis."
},
{
... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781082220_605_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 515 | true | 18 |
sft_1781075668_173_001 | train | <|im_start|>system
Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence.<|im_end|>
<|im_start|>user
Summarize what the local sources say about how fungi influence ecosystem processes, especially decomposition and mycorrhizal effects.<|im_end|>
<|im_st... | [
{
"role": "system",
"content": "Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize what the local sources say about how fungi influence ec... | [
{
"role": "system",
"content": "Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence."
},
{
"role": "user",
"content": "Summarize what the local sources say about how fungi influence ecosystem processes, especially decompositio... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075668_173_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 540 | true | 19 |
sft_1781072162_6_005 | train | <|im_start|>system
You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom and want to know whether this system can run a databa... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want ... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "caution",
"requires_rag": false,
"evidence_status": "no_rag_needed",
"source_mode": "real_rag",
"safety_flags": [
"field_identification"
],
"sft_id": "sft_1781072162_6_005",
"created_by": "codex",
"codex_model"... | [] | 253 | true | 20 |
sft_1781077800_337_001 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
Give me a compact evidence-backed explanation of how fungal hyphae support nutrient absorption.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"na... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Give me a compact evidence-backed explanation of how fungal h... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools."
},
{
"role": "user",
"content": "Give me a compact evidence-backed explanation of how fungal hyphae support nutrient absorption."
},
... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077800_337_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 726 | true | 21 |
sft_1781087643_830_005 | train | <|im_start|>system
You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps.<|im_end|>
<|im_start|>user
Do these retrieved sources prove that all fungi improve plant nutrient uptake?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search",... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Do these retrieved sources prove that all fungi improve plant... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps."
},
{
"role": "user",
"content": "Do these retrieved sources prove that all fungi improve plant nutrient uptake?"
},
{
"role": "a... | {
"task_type": "insufficient_evidence",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partial_support",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781087643_830_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_rea... | [
"rag.search",
"final.answer"
] | 444 | true | 22 |
sft_1781075958_202_002 | train | <|im_start|>system
Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools.<|im_end|>
<|im_start|>user
Does the evidence say fungal hyphae absorb nutrients directly, or only that they help plants get nutrients?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"r... | [
{
"role": "system",
"content": "Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Does the evidence say fungal hyphae absorb nutrients directly, or only that the... | [
{
"role": "system",
"content": "Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools."
},
{
"role": "user",
"content": "Does the evidence say fungal hyphae absorb nutrients directly, or only that they help plants get nutrients?"
},
{
... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_scope_limits",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075958_202_002",
"created_by": "codex",
"codex_model": "gpt-5... | [
"rag.search",
"final.answer"
] | 431 | true | 23 |
sft_1781088660_872_002 | train | <|im_start|>system
Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial.<|im_end|>
<|im_start|>user
Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis with plants?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","argumen... | [
{
"role": "system",
"content": "Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis wit... | [
{
"role": "system",
"content": "Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial."
},
{
"role": "user",
"content": "Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis with plants?"
},
{
"role": "assistant... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partial",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781088660_872_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
"rag.search",
"final.answer"
] | 525 | true | 24 |
sft_1781087643_832_004 | train | <|im_start|>system
Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages.<|im_end|>
<|im_start|>user
I found a smooth white mushroom in my lawn after rain. The gills look pale and the cap is about 6 cm wide. Is it safe to cook tonight?<... | [
{
"role": "system",
"content": "Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a smooth white mushroom in my lawn after ... | [
{
"role": "system",
"content": "Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages."
},
{
"role": "user",
"content": "I found a smooth white mushroom in my lawn after rain. The gills look pale and the cap is a... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": "sft... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 368 | true | 25 |
sft_1781074997_112_004 | train | <|im_start|>system
Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response.<|im_end|>
<|im_start|>user
I have an ITS sequence from an unknown mold. Which runtime tool should handle BLAST-style matching and alignment?<|im_end|>
<|im_s... | [
{
"role": "system",
"content": "Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown mold.... | [
{
"role": "system",
"content": "Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response."
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown mold. Which runtime tool should handle BLAST-st... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable_routing",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781074997_112_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"code... | [
"final.answer"
] | 151 | true | 26 |
sft_1781078321_380_004 | train | <|im_start|>system
You are a local fungi RAG agent. For safety-sensitive mushroom questions, run safety review and avoid edibility assurances from short descriptions.<|im_end|>
<|im_start|>user
I found a tan mushroom in my yard after rain. It has white gills. Can I cook it tonight if it smells normal?<|im_end|>
<|im_st... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. For safety-sensitive mushroom questions, run safety review and avoid edibility assurances from short descriptions.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom in my yard after ... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. For safety-sensitive mushroom questions, run safety review and avoid edibility assurances from short descriptions."
},
{
"role": "user",
"content": "I found a tan mushroom in my yard after rain. It has white gills. Can I cook it to... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781078321_380_0... | [
"safety.review",
"final.answer"
] | 386 | true | 27 |
sft_1781075268_143_002 | train | <|im_start|>system
Use implemented tools only. Cite only source IDs present in tool messages.<|im_end|>
<|im_start|>user
What evidence do we have that fungal mycelia help move nutrients to plants?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungal hyphae nutrient absorption... | [
{
"role": "system",
"content": "Use implemented tools only. Cite only source IDs present in tool messages.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What evidence do we have that fungal mycelia help move nutrients to plants?",
"name": null,
"tool_calls":... | [
{
"role": "system",
"content": "Use implemented tools only. Cite only source IDs present in tool messages."
},
{
"role": "user",
"content": "What evidence do we have that fungal mycelia help move nutrients to plants?"
},
{
"role": "assistant",
"content": "{\"tool_calls\":[{\"name\":\... | {
"task_type": "compound_evidence_review",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075268_143_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort"... | [] | 499 | true | 28 |
sft_1781077635_327_004 | train | <|im_start|>system
Wild mushroom edibility and identification require caution. Use safety.review when a user asks whether a mushroom is safe to eat.<|im_end|>
<|im_start|>user
I found a white mushroom near a tree after rain. If it has fungus-like threads in the soil, can I cook it tonight?<|im_end|>
<|im_start|>assista... | [
{
"role": "system",
"content": "Wild mushroom edibility and identification require caution. Use safety.review when a user asks whether a mushroom is safe to eat.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom near a tree after rain. If it has... | [
{
"role": "system",
"content": "Wild mushroom edibility and identification require caution. Use safety.review when a user asks whether a mushroom is safe to eat."
},
{
"role": "user",
"content": "I found a white mushroom near a tree after rain. If it has fungus-like threads in the soil, can I co... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable_safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
... | [
"safety.review",
"final.answer"
] | 371 | true | 29 |
sft_1781075001_118_005 | train | <|im_start|>system
Do not identify wild mushrooms as edible from short descriptions. Safety-sensitive field identification requires refusal or redirect to safer next steps.<|im_end|>
<|im_start|>user
I found a white mushroom in my yard with gills and a ring. Is it safe to cook if it smells normal?<|im_end|>
<|im_start|... | [
{
"role": "system",
"content": "Do not identify wild mushrooms as edible from short descriptions. Safety-sensitive field identification requires refusal or redirect to safer next steps.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom in my yar... | [
{
"role": "system",
"content": "Do not identify wild mushrooms as edible from short descriptions. Safety-sensitive field identification requires refusal or redirect to safer next steps."
},
{
"role": "user",
"content": "I found a white mushroom in my yard with gills and a ring. Is it safe to coo... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781075001_118_0... | [
"safety.review",
"final.answer"
] | 451 | true | 30 |
sft_1781076527_249_004 | train | <|im_start|>system
You are a local fungi RAG assistant. For wild mushroom edibility or identification, perform a safety review and do not declare a mushroom safe to eat from a short description.<|im_end|>
<|im_start|>user
I found a tan mushroom under oak with white gills and a ring. Can I cook and eat it if it smells m... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. For wild mushroom edibility or identification, perform a safety review and do not declare a mushroom safe to eat from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a ta... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. For wild mushroom edibility or identification, perform a safety review and do not declare a mushroom safe to eat from a short description."
},
{
"role": "user",
"content": "I found a tan mushroom under oak with white gills and ... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"short_description_insufficient"
],
"sft_id... | [
"safety.review",
"final.answer"
] | 423 | true | 31 |
sft_1781075540_162_001 | train | <|im_start|>system
You are a small local fungi RAG/tool-use agent. Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer before giving the final response. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
What evidence supports the idea that fungal hyphae or ... | [
{
"role": "system",
"content": "You are a small local fungi RAG/tool-use agent. Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer before giving the final response. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
... | [
{
"role": "system",
"content": "You are a small local fungi RAG/tool-use agent. Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer before giving the final response. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "What evide... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075540_162_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 527 | true | 32 |
sft_1781074240_59_003 | train | <|im_start|>system
You are a local fungi RAG/tool-use agent. Safety-sensitive mushroom identification and edibility claims require caution.<|im_end|>
<|im_start|>user
I found a tan mushroom under an oak with white gills. Is it safe to eat if I cook it well?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"safety... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Safety-sensitive mushroom identification and edibility claims require caution.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom under an oak with white gills. Is it safe to... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Safety-sensitive mushroom identification and edibility claims require caution."
},
{
"role": "user",
"content": "I found a tan mushroom under an oak with white gills. Is it safe to eat if I cook it well?"
},
{
"rol... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781074240_59_00... | [
"safety.review",
"final.answer"
] | 366 | true | 33 |
sft_1781078143_361_004 | train | <|im_start|>system
For wild mushroom edibility or toxicity questions, perform a safety review and do not identify or clear mushrooms for eating from brief descriptions.<|im_end|>
<|im_start|>user
I found a white mushroom with white gills under oak after rain. Can I cook it if it smells mild?<|im_end|>
<|im_start|>assis... | [
{
"role": "system",
"content": "For wild mushroom edibility or toxicity questions, perform a safety review and do not identify or clear mushrooms for eating from brief descriptions.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom with white gi... | [
{
"role": "system",
"content": "For wild mushroom edibility or toxicity questions, perform a safety review and do not identify or clear mushrooms for eating from brief descriptions."
},
{
"role": "user",
"content": "I found a white mushroom with white gills under oak after rain. Can I cook it if... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_review_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 449 | true | 34 |
sft_1781086386_790_002 | train | <|im_start|>system
Use implemented tools only. Routing placeholders are not runtime calls. Final answers must be grounded in returned evidence.<|im_end|>
<|im_start|>user
Compare decomposition and mycorrhizal symbiosis as ecosystem roles of fungi. Keep it concise and cite the retrieved sources.<|im_end|>
<|im_start|>as... | [
{
"role": "system",
"content": "Use implemented tools only. Routing placeholders are not runtime calls. Final answers must be grounded in returned evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Compare decomposition and mycorrhizal symbiosis as ecosystem ro... | [
{
"role": "system",
"content": "Use implemented tools only. Routing placeholders are not runtime calls. Final answers must be grounded in returned evidence."
},
{
"role": "user",
"content": "Compare decomposition and mycorrhizal symbiosis as ecosystem roles of fungi. Keep it concise and cite the... | {
"task_type": "literature_synthesis",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_broad",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781086386_790_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reas... | [
"rag.search",
"safety.review",
"final.answer"
] | 533 | true | 35 |
sft_1781086078_770_003 | train | <|im_start|>system
Preserve uncertainty when retrieved evidence is limited. Cite only IDs present in tool output.<|im_end|>
<|im_start|>user
Can I say that all fungi use hyphae to absorb nutrients? I need a careful wording based only on the retrieved chunks.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.s... | [
{
"role": "system",
"content": "Preserve uncertainty when retrieved evidence is limited. Cite only IDs present in tool output.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can I say that all fungi use hyphae to absorb nutrients? I need a careful wording based only ... | [
{
"role": "system",
"content": "Preserve uncertainty when retrieved evidence is limited. Cite only IDs present in tool output."
},
{
"role": "user",
"content": "Can I say that all fungi use hyphae to absorb nutrients? I need a careful wording based only on the retrieved chunks."
},
{
"ro... | {
"task_type": "insufficient_evidence",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "insufficient_for_broad_claim",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781086078_770_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"code... | [
"rag.search",
"final.answer"
] | 553 | true | 36 |
sft_1781080839_532_005 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
I found a small white mushroom in my lawn with white gills. Can I eat it if I cook it well?<|im_end... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a sma... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools."
},
{
"role": "user",
"content": "I found a small white mushroom in my lawn with white gi... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [
"safety.review",
"final.answer"
] | 390 | true | 37 |
sft_1781075542_167_001 | train | <|im_start|>system
You are a local fungi RAG assistant. Use implemented tools only, cite retrieved sources, and preserve uncertainty.<|im_end|>
<|im_start|>user
In two or three sentences, explain how fungal hyphae help with nutrient absorption. Cite the retrieved evidence.<|im_end|>
<|im_start|>assistant
{"tool_calls":... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use implemented tools only, cite retrieved sources, and preserve uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "In two or three sentences, explain how fungal hyphae help with nutrient a... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use implemented tools only, cite retrieved sources, and preserve uncertainty."
},
{
"role": "user",
"content": "In two or three sentences, explain how fungal hyphae help with nutrient absorption. Cite the retrieved evidence."
... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075542_167_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 532 | true | 38 |
sft_1781071275_3_004 | train | <|im_start|>system
You are a fungi tool-use router. Only call implemented tools. Routing-only placeholders may be mentioned but not invoked.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom and want to know if it matches a species complex. What should the agent do?<|im_end|>
<|im_start|>assistant
{"sta... | [
{
"role": "system",
"content": "You are a fungi tool-use router. Only call implemented tools. Routing-only placeholders may be mentioned but not invoked.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want to know if it matc... | [
{
"role": "system",
"content": "You are a fungi tool-use router. Only call implemented tools. Routing-only placeholders may be mentioned but not invoked."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want to know if it matches a species complex. What should the age... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_needed",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781071275_3_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_ef... | [
{
"name": "final.answer"
}
] | 211 | true | 39 |
sft_1781078665_402_005 | train | <|im_start|>system
Use implemented tools only. Routing-only placeholders may be discussed as unavailable future routes, but do not call them as runtime tools.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom. Which tool should this agent use to identify it: sequence.analyze or rag.search?<|im_end|>
<|i... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only placeholders may be discussed as unavailable future routes, but do not call them as runtime tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom. Which to... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only placeholders may be discussed as unavailable future routes, but do not call them as runtime tools."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom. Which tool should this agent use to identify it: s... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781078665_402_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
{
"name": "final.answer"
}
] | 202 | true | 40 |
sft_1781079220_434_002 | train | <|im_start|>system
You are a local fungi RAG assistant. For ecosystem questions, retrieve evidence and preserve limits of the evidence.<|im_end|>
<|im_start|>user
Are fungi mainly decomposers, or do they also shape ecosystems through symbiosis? Answer from the indexed corpus.<|im_end|>
<|im_start|>assistant
{"tool_call... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. For ecosystem questions, retrieve evidence and preserve limits of the evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Are fungi mainly decomposers, or do they also shape ecosystems through ... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. For ecosystem questions, retrieve evidence and preserve limits of the evidence."
},
{
"role": "user",
"content": "Are fungi mainly decomposers, or do they also shape ecosystems through symbiosis? Answer from the indexed corpus.... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781079220_434_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "m... | [
"rag.search",
"final.answer"
] | 604 | true | 41 |
sft_1781075959_204_001 | train | <|im_start|>system
You are a fungi RAG assistant. Use implemented tools only. Ground factual answers in retrieved evidence and cite source IDs from tool messages.<|im_end|>
<|im_start|>user
Summarize how fungi matter in ecosystems, especially decomposition and mycorrhizal roles.<|im_end|>
<|im_start|>assistant
{"tool_c... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual answers in retrieved evidence and cite source IDs from tool messages.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize how fungi matter in ecosystems, es... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual answers in retrieved evidence and cite source IDs from tool messages."
},
{
"role": "user",
"content": "Summarize how fungi matter in ecosystems, especially decomposition and mycorrhizal rol... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075959_204_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [] | 570 | true | 42 |
sft_1781073721_6_005 | train | <|im_start|>system
If retrieval does not support the requested claim, say so and avoid filling gaps with outside facts.<|im_end|>
<|im_start|>user
Based on local evidence, can we say melanized mycorrhizal fungi always increase soil carbon storage?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arg... | [
{
"role": "system",
"content": "If retrieval does not support the requested claim, say so and avoid filling gaps with outside facts.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Based on local evidence, can we say melanized mycorrhizal fungi always increase soil ca... | [
{
"role": "system",
"content": "If retrieval does not support the requested claim, say so and avoid filling gaps with outside facts."
},
{
"role": "user",
"content": "Based on local evidence, can we say melanized mycorrhizal fungi always increase soil carbon storage?"
},
{
"role": "assis... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "overclaim_not_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073721_6_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
... | [
"rag.search",
"final.answer"
] | 432 | true | 43 |
sft_1781069190_7_003 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use implemented tools only, cite retrieved numeric source IDs, and preserve uncertainty.<|im_end|>
<|im_start|>user
If I know the taxonomic species of an arbuscular mycorrhizal fungus, can I infer its functional effect on host plants?<|im_end|>
<|im_start|>assi... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use implemented tools only, cite retrieved numeric source IDs, and preserve uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "If I know the taxonomic species of an arbuscular mycorrhiza... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use implemented tools only, cite retrieved numeric source IDs, and preserve uncertainty."
},
{
"role": "user",
"content": "If I know the taxonomic species of an arbuscular mycorrhizal fungus, can I infer its functional effec... | {
"task_type": "source_conflict_resolution",
"domain": "taxonomy",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_limits",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781069190_7_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reas... | [
"rag.search",
"final.answer"
] | 491 | true | 44 |
sft_1781087001_811_004 | train | <|im_start|>system
You are a fungi RAG assistant. Use safety.review for cultivation, protocol, contamination, edibility, toxicity, and medicinal claims.<|im_end|>
<|im_start|>user
Can I apply the white-rot and brown-rot fungus pretreatment result as a practical home protocol to boost wood breakdown?<|im_end|>
<|im_star... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use safety.review for cultivation, protocol, contamination, edibility, toxicity, and medicinal claims.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can I apply the white-rot and brown-rot fungus pretrea... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use safety.review for cultivation, protocol, contamination, edibility, toxicity, and medicinal claims."
},
{
"role": "user",
"content": "Can I apply the white-rot and brown-rot fungus pretreatment result as a practical home protocol ... | {
"task_type": "cultivation_troubleshooting",
"domain": "cultivation",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "partial",
"source_mode": "real_rag",
"safety_flags": [
"protocol"
],
"sft_id": "sft_1781087001_811_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
... | [
{
"name": "rag.search"
},
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 650 | true | 45 |
sft_1781077800_339_004 | train | <|im_start|>system
Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
I found a brown mushroom under oak. Can I eat it if the cap smells pleasant?<|im_end|>
<|im_start|>assistant
{"t... | [
{
"role": "system",
"content": "Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a brown mushroom u... | [
{
"role": "system",
"content": "Use rag.search for grounded evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "I found a brown mushroom under oak. Can I eat it if the cap smells p... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [
"safety.review",
"final.answer"
] | 317 | true | 46 |
sft_1781080624_525_003 | train | <|im_start|>system
You are a local fungi RAG agent. For safety-sensitive mushroom questions, use safety.review and do not declare edibility from a short description.<|im_end|>
<|im_start|>user
I found a small brown mushroom in my yard with gills and a white stem. Is it safe to cook if I peel the cap?<|im_end|>
<|im_sta... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. For safety-sensitive mushroom questions, use safety.review and do not declare edibility from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a small brown mushroom in my yard... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. For safety-sensitive mushroom questions, use safety.review and do not declare edibility from a short description."
},
{
"role": "user",
"content": "I found a small brown mushroom in my yard with gills and a white stem. Is it safe t... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable_safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
... | [
"safety.review",
"final.answer"
] | 375 | true | 47 |
sft_1781076975_281_001 | train | <|im_start|>system
You are a small fungi RAG/tool-use agent. Ground factual answers in retrieved evidence and use safety review for risky mushroom, toxicity, medicinal, cultivation, contamination, or protocol claims.<|im_end|>
<|im_start|>user
In one paragraph, explain how fungal hyphae contribute to nutrient absorptio... | [
{
"role": "system",
"content": "You are a small fungi RAG/tool-use agent. Ground factual answers in retrieved evidence and use safety review for risky mushroom, toxicity, medicinal, cultivation, contamination, or protocol claims.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"c... | [
{
"role": "system",
"content": "You are a small fungi RAG/tool-use agent. Ground factual answers in retrieved evidence and use safety review for risky mushroom, toxicity, medicinal, cultivation, contamination, or protocol claims."
},
{
"role": "user",
"content": "In one paragraph, explain how fu... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781076975_281_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 692 | true | 48 |
sft_1781077638_333_005 | train | <|im_start|>system
Routing-only tools must not be called. For sequence or taxonomy handoffs, explain the needed workflow and cite retrieved context only if factual claims are made.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom culture. Can you run an alignment and tell me the species?<|im_end|>
<|im... | [
{
"role": "system",
"content": "Routing-only tools must not be called. For sequence or taxonomy handoffs, explain the needed workflow and cite retrieved context only if factual claims are made.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence fro... | [
{
"role": "system",
"content": "Routing-only tools must not be called. For sequence or taxonomy handoffs, explain the needed workflow and cite retrieved context only if factual claims are made."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom culture. Can you run an align... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "caution",
"requires_rag": false,
"evidence_status": "routing_only_no_runtime_tool",
"source_mode": "real_rag",
"safety_flags": [
"field_identification"
],
"sft_id": "sft_1781077638_333_005",
"created_by": "codex"... | [
"final.answer"
] | 159 | true | 49 |
sft_1781084608_710_004 | train | <|im_start|>system
Do not identify wild mushrooms as edible from short descriptions. Use safety.review for edibility or field identification risk.<|im_end|>
<|im_start|>user
I found a white mushroom under oak with white gills and a cup at the base. Is it safe if I cook it well?<|im_end|>
<|im_start|>assistant
{"tool_ca... | [
{
"role": "system",
"content": "Do not identify wild mushrooms as edible from short descriptions. Use safety.review for edibility or field identification risk.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom under oak with white gills and a cu... | [
{
"role": "system",
"content": "Do not identify wild mushrooms as edible from short descriptions. Use safety.review for edibility or field identification risk."
},
{
"role": "user",
"content": "I found a white mushroom under oak with white gills and a cup at the base. Is it safe if I cook it wel... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781084608_710_004",... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 367 | true | 50 |
sft_1781076235_222_004 | train | <|im_start|>system
You are a local fungi RAG agent. Use safety.review for edibility and field identification risk. Never say a wild mushroom is safe to eat from a short description.<|im_end|>
<|im_start|>user
I found a dark mushroom under a pine after rain. Can I eat it if it smells mild?<|im_end|>
<|im_start|>assistan... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use safety.review for edibility and field identification risk. Never say a wild mushroom is safe to eat from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a dark mushroom u... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use safety.review for edibility and field identification risk. Never say a wild mushroom is safe to eat from a short description."
},
{
"role": "user",
"content": "I found a dark mushroom under a pine after rain. Can I eat it if it... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"wild_mushroom_id"
],
"sft_id": "sft_1781076235_222_004",
"... | [
{
"name": "safety.review",
"status": "implemented_alias"
},
{
"name": "final.answer",
"status": "implemented_alias"
}
] | 378 | true | 51 |
sft_1781077296_301_005 | train | <|im_start|>system
You are a helpful AI assistant named SmolLM, trained by Hugging Face<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom and want the agent to identify it. Which workflow should it route to?<|im_end|>
<|im_start|>assistant
{"status":"ok","answer_type":"tool_routing_guidance","citation_r... | [
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want the agent to identify it. Which workflow should it route to?",
"name": null,
"tool_calls": null
},
{
"role": "assistant",
"content": "{\"status\":\"ok\",\"answer_type\":\"tool_routing_guidance\",\"citation_requ... | [
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want the agent to identify it. Which workflow should it route to?"
},
{
"role": "assistant",
"content": "{\"status\":\"ok\",\"answer_type\":\"tool_routing_guidance\",\"citation_required\":false}"
},
{
"role": "assis... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "caution",
"requires_rag": false,
"evidence_status": "no_rag_needed",
"source_mode": "real_rag",
"safety_flags": [
"field_identification"
],
"sft_id": "sft_1781077296_301_005",
"created_by": "codex",
"codex_mode... | [
"final.answer"
] | 170 | true | 52 |
sft_1781076233_218_004 | train | <|im_start|>system
You are a fungi safety assistant. Do not identify wild mushrooms as edible from a short description.<|im_end|>
<|im_start|>user
I found a white-gilled mushroom in my yard and it smells mild. Can I cook it tonight if I send a description?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"safety.... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white-gilled mushroom in my yard and it smells mild. Can I cook it tonight if... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from a short description."
},
{
"role": "user",
"content": "I found a white-gilled mushroom in my yard and it smells mild. Can I cook it tonight if I send a description?"
},
{
"role... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781076233_218_004",... | [
"safety.review",
"final.answer"
] | 327 | true | 53 |
sft_1781075825_192_005 | train | <|im_start|>system
You are a grounded fungi RAG assistant. When evidence is tentative, preserve uncertainty and cite only retrieved source IDs.<|im_end|>
<|im_start|>user
Can I say melanized mycorrhizal fungi definitely increase soil carbon storage during drought?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. When evidence is tentative, preserve uncertainty and cite only retrieved source IDs.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can I say melanized mycorrhizal fungi definitely increase soil ... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. When evidence is tentative, preserve uncertainty and cite only retrieved source IDs."
},
{
"role": "user",
"content": "Can I say melanized mycorrhizal fungi definitely increase soil carbon storage during drought?"
},
{
... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partial_support",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075825_192_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"code... | [] | 442 | true | 54 |
sft_1781074861_98_002 | train | <|im_start|>system
Use available implemented tools only. Do not call routing-only placeholders. Cite returned numeric source IDs for real RAG evidence.<|im_end|>
<|im_start|>user
What are the main ecosystem roles of fungi in decomposition and symbiosis? Keep it concise.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"... | [
{
"role": "system",
"content": "Use available implemented tools only. Do not call routing-only placeholders. Cite returned numeric source IDs for real RAG evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What are the main ecosystem roles of fungi in decomposi... | [
{
"role": "system",
"content": "Use available implemented tools only. Do not call routing-only placeholders. Cite returned numeric source IDs for real RAG evidence."
},
{
"role": "user",
"content": "What are the main ecosystem roles of fungi in decomposition and symbiosis? Keep it concise."
},... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_limits",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781074861_98_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_... | [] | 738 | true | 55 |
sft_1781073721_5_002 | train | <|im_start|>system
Use available implemented tools only. Do not invent citations. Cite numeric source IDs from retrieved evidence.<|im_end|>
<|im_start|>user
Summarize two ecosystem roles of fungi: decomposition and symbiosis with plants.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{... | [
{
"role": "system",
"content": "Use available implemented tools only. Do not invent citations. Cite numeric source IDs from retrieved evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize two ecosystem roles of fungi: decomposition and symbiosis with pla... | [
{
"role": "system",
"content": "Use available implemented tools only. Do not invent citations. Cite numeric source IDs from retrieved evidence."
},
{
"role": "user",
"content": "Summarize two ecosystem roles of fungi: decomposition and symbiosis with plants."
},
{
"role": "assistant",
... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_scope_limit",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073721_5_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 645 | true | 56 |
sft_1781073984_33_002 | train | <|im_start|>system
You are a local fungi RAG agent. Use retrieved evidence for factual claims and preserve uncertainty.<|im_end|>
<|im_start|>user
What ecosystem roles for fungi are supported by the retrieved sources: decomposition, mycorrhizal symbiosis, or both?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use retrieved evidence for factual claims and preserve uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What ecosystem roles for fungi are supported by the retrieved sources: decomposition, m... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use retrieved evidence for factual claims and preserve uncertainty."
},
{
"role": "user",
"content": "What ecosystem roles for fungi are supported by the retrieved sources: decomposition, mycorrhizal symbiosis, or both?"
},
{
... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partially_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073984_33_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_ef... | [
"rag.search",
"final.answer"
] | 533 | true | 57 |
sft_1781087327_820_004 | train | <|im_start|>system
Use implemented tools only. Routing-only tools may be discussed but not called.<|im_end|>
<|im_start|>user
I have an ITS sequence and want species-level identification. Which runtime tool should the agent call?<|im_end|>
<|im_start|>assistant
{"status":"ok","note":"sequence.analyze is routing-only in... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only tools may be discussed but not called.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence and want species-level identification. Which runtime tool should the agent call?",
... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only tools may be discussed but not called."
},
{
"role": "user",
"content": "I have an ITS sequence and want species-level identification. Which runtime tool should the agent call?"
},
{
"role": "assistant",
"conten... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "routing_only",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781087327_820_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasonin... | [
"final.answer"
] | 176 | true | 58 |
sft_1781083256_650_004 | train | <|im_start|>system
You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or images; redirect to expert verification when needed.<|im_end|>
<|im_start|>user
I found a tan mushroom under oak with white gills. Is it safe to cook for dinner if it smells mild?<|im_end|>
<|im_star... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or images; redirect to expert verification when needed.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom under oak ... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or images; redirect to expert verification when needed."
},
{
"role": "user",
"content": "I found a tan mushroom under oak with white gills. Is it safe to cook for d... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"wild_mushroom_id"
],
"sft_id": "sft_1781083256_650_004",
"... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 440 | true | 59 |
sft_1781075667_172_003 | train | <|im_start|>system
Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty and run safety.review for safety-sensitive claims.<|im_end|>
<|im_start|>user
A grower told me all arbuscular mycorrhizal fungi work about the same for plant nutrient uptake. Is that supported?<|i... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty and run safety.review for safety-sensitive claims.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "A grower told me all arbuscular ... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty and run safety.review for safety-sensitive claims."
},
{
"role": "user",
"content": "A grower told me all arbuscular mycorrhizal fungi work about the same for ... | {
"task_type": "source_conflict_resolution",
"domain": "cultivation",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075667_172_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_e... | [
"rag.search",
"final.answer"
] | 517 | true | 60 |
sft_1781080839_531_005 | train | <|im_start|>system
You are a routing-aware fungi assistant. Use implemented tools only; explain when future placeholders are unavailable.<|im_end|>
<|im_start|>user
I have an ITS sequence from an unknown fungus and want species ID. Which tool route should the agent choose?<|im_end|>
<|im_start|>assistant
Route this as ... | [
{
"role": "system",
"content": "You are a routing-aware fungi assistant. Use implemented tools only; explain when future placeholders are unavailable.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown fungus and want species ID. Wh... | [
{
"role": "system",
"content": "You are a routing-aware fungi assistant. Use implemented tools only; explain when future placeholders are unavailable."
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown fungus and want species ID. Which tool route should the agent choose?"
... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781080839_531_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
"final.answer"
] | 146 | true | 61 |
sft_1781087974_851_003 | train | <|im_start|>system
For wild mushroom edibility or identification, use safety.review and do not declare a mushroom safe from a short description.<|im_end|>
<|im_start|>user
I found a tan mushroom under an oak with white gills and no obvious ring. Is it safe to cook?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name"... | [
{
"role": "system",
"content": "For wild mushroom edibility or identification, use safety.review and do not declare a mushroom safe from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a tan mushroom under an oak with white gills and no ob... | [
{
"role": "system",
"content": "For wild mushroom edibility or identification, use safety.review and do not declare a mushroom safe from a short description."
},
{
"role": "user",
"content": "I found a tan mushroom under an oak with white gills and no obvious ring. Is it safe to cook?"
},
{
... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [] | 389 | true | 62 |
sft_1781076084_210_003 | train | <|im_start|>system
You are a local fungi RAG agent. Use implemented tools only, preserve uncertainty, and cite retrieved source IDs in final answers.<|im_end|>
<|im_start|>user
Can I conclude from the indexed sources that every fungus uses hyphae to absorb nutrients in the same way?<|im_end|>
<|im_start|>assistant
{"to... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use implemented tools only, preserve uncertainty, and cite retrieved source IDs in final answers.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can I conclude from the indexed sources that every fungus... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Use implemented tools only, preserve uncertainty, and cite retrieved source IDs in final answers."
},
{
"role": "user",
"content": "Can I conclude from the indexed sources that every fungus uses hyphae to absorb nutrients in the sa... | {
"task_type": "insufficient_evidence",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "insufficient_for_broad_claim",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781076084_210_003",
"created_by": "codex",
"codex_model": "gpt-5.5",... | [] | 628 | true | 63 |
sft_1781084608_710_005 | train | <|im_start|>system
Only rag.search, safety.review, and final.answer are implemented. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders.<|im_end|>
<|im_start|>user
I have an ITS sequence from an unknown mushroom. Can you run the sequence analyzer and tell me the species?<|im_end|>
<|i... | [
{
"role": "system",
"content": "Only rag.search, safety.review, and final.answer are implemented. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from an unkn... | [
{
"role": "system",
"content": "Only rag.search, safety.review, and final.answer are implemented. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders."
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown mushroom. Can you run the sequence ana... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "caution",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"field_identification"
],
"sft_id": "sft_1781084608_710_005",
"created_by": "codex",
"codex_mod... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 391 | true | 64 |
sft_1781073985_36_003 | train | <|im_start|>system
You are a local fungi RAG assistant. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer only after evidence and safety checks. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
Can I say fungal hyphae directly absorb vitamins from soil and delive... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer only after evidence and safety checks. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer only after evidence and safety checks. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "Can I say fungal hyphae d... | {
"task_type": "insufficient_evidence",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partially_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073985_36_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_... | [
"rag.search",
"final.answer"
] | 482 | true | 65 |
sft_1781083791_677_002 | train | <|im_start|>system
Use provided tools only. Do not call routing-only placeholders as implemented tools. Final answers must be grounded in tool messages.<|im_end|>
<|im_start|>user
Which implemented tool should I use to answer a question about fungal roles in decomposition and mycorrhizal symbiosis?<|im_end|>
<|im_start... | [
{
"role": "system",
"content": "Use provided tools only. Do not call routing-only placeholders as implemented tools. Final answers must be grounded in tool messages.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Which implemented tool should I use to answer a questi... | [
{
"role": "system",
"content": "Use provided tools only. Do not call routing-only placeholders as implemented tools. Final answers must be grounded in tool messages."
},
{
"role": "user",
"content": "Which implemented tool should I use to answer a question about fungal roles in decomposition and... | {
"task_type": "tool_routing",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_needed",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781083791_677_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "... | [
"final.answer"
] | 117 | true | 66 |
sft_1781083791_677_005 | train | <|im_start|>system
Use rag.search for factual claims. If retrieved evidence is not specific enough, say so and avoid unsupported claims.<|im_end|>
<|im_start|>user
Can this corpus tell me which AMF genotype is best for maximizing nutrient absorption in a particular crop field?<|im_end|>
<|im_start|>assistant
{"tool_cal... | [
{
"role": "system",
"content": "Use rag.search for factual claims. If retrieved evidence is not specific enough, say so and avoid unsupported claims.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can this corpus tell me which AMF genotype is best for maximizing nutr... | [
{
"role": "system",
"content": "Use rag.search for factual claims. If retrieved evidence is not specific enough, say so and avoid unsupported claims."
},
{
"role": "user",
"content": "Can this corpus tell me which AMF genotype is best for maximizing nutrient absorption in a particular crop field... | {
"task_type": "insufficient_evidence",
"domain": "taxonomy",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "insufficient",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781083791_677_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort... | [
"rag.search",
"final.answer"
] | 465 | true | 67 |
sft_1781073979_25_001 | train | <|im_start|>system
You are a fungi RAG assistant. Use rag.search for grounded evidence and cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
How do arbuscular mycorrhizal fungal hyphae help plants get nutrients?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"f... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use rag.search for grounded evidence and cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "How do arbuscular mycorrhizal fungal hyphae help plants get nutrients?",
... | [
{
"role": "system",
"content": "You are a fungi RAG assistant. Use rag.search for grounded evidence and cite only source IDs returned by tools."
},
{
"role": "user",
"content": "How do arbuscular mycorrhizal fungal hyphae help plants get nutrients?"
},
{
"role": "assistant",
"content... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073979_25_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "me... | [
"rag.search",
"final.answer"
] | 597 | true | 68 |
sft_1781077973_355_001 | train | <|im_start|>system
Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims.<|im_end|>
<|im_start|>user
Give me a short evidence-backed explanation of how fungi matter in ecosystems, especially decomposition and mycorrhizal roles.<|im_end|>
... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Give me a short evidence-backed explanation of how ... | [
{
"role": "system",
"content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims."
},
{
"role": "user",
"content": "Give me a short evidence-backed explanation of how fungi matter in ecosystems, especially dec... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077973_355_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 592 | true | 69 |
sft_1781074417_66_ex05 | train | <|im_start|>system
You are a local fungi RAG assistant. Do not identify wild mushrooms as edible from brief descriptions; use safety.review for edibility or field identification risk.<|im_end|>
<|im_start|>user
I found a small brown mushroom near a tree after rain. It has gills. Is it safe to eat if I cook it well?<|im... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Do not identify wild mushrooms as edible from brief descriptions; use safety.review for edibility or field identification risk.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a small brown m... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Do not identify wild mushrooms as edible from brief descriptions; use safety.review for edibility or field identification risk."
},
{
"role": "user",
"content": "I found a small brown mushroom near a tree after rain. It has gil... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable_safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_178107... | [
"safety.review",
"final.answer"
] | 346 | true | 70 |
sft_1781076086_214_002 | train | <|im_start|>system
Use implemented tools only. Routing-only tools are not runtime calls. Final claims must be grounded in tool evidence.<|im_end|>
<|im_start|>user
What ecosystem roles do fungi have in decomposition and mycorrhizal symbiosis? Keep it concise and cite the sources.<|im_end|>
<|im_start|>assistant
{"tool_... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only tools are not runtime calls. Final claims must be grounded in tool evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What ecosystem roles do fungi have in decomposition and mycorrhizal sy... | [
{
"role": "system",
"content": "Use implemented tools only. Routing-only tools are not runtime calls. Final claims must be grounded in tool evidence."
},
{
"role": "user",
"content": "What ecosystem roles do fungi have in decomposition and mycorrhizal symbiosis? Keep it concise and cite the sour... | {
"task_type": "literature_synthesis",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781076086_214_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 612 | true | 71 |
sft_1781075132_126_005 | train | <|im_start|>system
taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided. Do not call routing-only placeholders as runtime tools.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom sample. Can you run a database search and tell me the ... | [
{
"role": "system",
"content": "taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided. Do not call routing-only placeholders as runtime tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have ... | [
{
"role": "system",
"content": "taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided. Do not call routing-only placeholders as runtime tools."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom sample. Ca... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "genomics",
"risk_level": "caution",
"requires_rag": false,
"evidence_status": "routing_only",
"source_mode": "real_rag",
"safety_flags": [
"field_identification",
"no_edibility_inference"
],
"sft_id": "sft_1781075132_126_005",
"create... | [
"safety.review",
"final.answer"
] | 357 | true | 72 |
sft_1781075957_200_005 | train | <|im_start|>system
You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or photos. Use safety.review for edibility or toxicity risk.<|im_end|>
<|im_start|>user
I found a white mushroom with gills near an oak tree. It smells mild. Is it safe to cook for dinner?<|im_end|>
<|i... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or photos. Use safety.review for edibility or toxicity risk.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom wit... | [
{
"role": "system",
"content": "You are a fungi safety assistant. Do not identify wild mushrooms as edible from short descriptions or photos. Use safety.review for edibility or toxicity risk."
},
{
"role": "user",
"content": "I found a white mushroom with gills near an oak tree. It smells mild. ... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": "sft... | [
"safety.review",
"final.answer"
] | 398 | true | 73 |
sft_1781076978_288_004 | train | <|im_start|>system
taxonomy.resolve is routing-only in this dataset. Use rag.search for currently implemented evidence retrieval.<|im_end|>
<|im_start|>user
Should this question be routed to taxonomy.resolve: 'Is the old name of a fungus still accepted, and what synonyms should I search?'<|im_end|>
<|im_start|>assistan... | [
{
"role": "system",
"content": "taxonomy.resolve is routing-only in this dataset. Use rag.search for currently implemented evidence retrieval.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Should this question be routed to taxonomy.resolve: 'Is the old name of a fun... | [
{
"role": "system",
"content": "taxonomy.resolve is routing-only in this dataset. Use rag.search for currently implemented evidence retrieval."
},
{
"role": "user",
"content": "Should this question be routed to taxonomy.resolve: 'Is the old name of a fungus still accepted, and what synonyms shou... | {
"task_type": "tool_routing",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "no_retrieval_needed",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781076978_288_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_e... | [] | 170 | true | 74 |
sft_1781074735_92_002 | train | <|im_start|>system
Use rag.search for grounded fungi evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
Summarize what the local sources say about fungi in ecosystems, especially decomposition and mycorrhizal s... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize what the l... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence, safety.review for safety-sensitive claims, and final.answer for the final response. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "Summarize what the local sources say about fungi in ecosystems... | {
"task_type": "literature_synthesis",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partially_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781074735_92_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_ef... | [] | 618 | true | 75 |
sft_1781085485_755_003 | train | <|im_start|>system
Resolve apparent source conflicts using only retrieved evidence and cite source IDs.<|im_end|>
<|im_start|>user
One source says fungi decompose material, while another says some fungal cell walls resist decomposition. Is that a contradiction?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"ra... | [
{
"role": "system",
"content": "Resolve apparent source conflicts using only retrieved evidence and cite source IDs.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "One source says fungi decompose material, while another says some fungal cell walls resist decompositio... | [
{
"role": "system",
"content": "Resolve apparent source conflicts using only retrieved evidence and cite source IDs."
},
{
"role": "user",
"content": "One source says fungi decompose material, while another says some fungal cell walls resist decomposition. Is that a contradiction?"
},
{
... | {
"task_type": "source_conflict_resolution",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781085485_755_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_ef... | [
"rag.search",
"final.answer"
] | 433 | true | 76 |
sft_1781078666_404_004 | train | <|im_start|>system
For mushroom edibility or field ID, use safety.review and do not identify or declare edible from a short description.<|im_end|>
<|im_start|>user
I found a bright orange mushroom under an oak in my yard. Is it safe to cook if it smells good?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"safe... | [
{
"role": "system",
"content": "For mushroom edibility or field ID, use safety.review and do not identify or declare edible from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a bright orange mushroom under an oak in my yard. Is it safe t... | [
{
"role": "system",
"content": "For mushroom edibility or field ID, use safety.review and do not identify or declare edible from a short description."
},
{
"role": "user",
"content": "I found a bright orange mushroom under an oak in my yard. Is it safe to cook if it smells good?"
},
{
"r... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781078666_404_0... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 334 | true | 77 |
sft_1781081060_552_004 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use implemented tools only. Routing-only placeholders may be discussed as future workflows but not called.<|im_end|>
<|im_start|>user
Which tool should handle an ITS sequence that may need BLAST and alignment: rag.search, taxonomy.resolve, or sequence.analyze?<... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use implemented tools only. Routing-only placeholders may be discussed as future workflows but not called.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Which tool should handle an ITS sequence ... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use implemented tools only. Routing-only placeholders may be discussed as future workflows but not called."
},
{
"role": "user",
"content": "Which tool should handle an ITS sequence that may need BLAST and alignment: rag.sea... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "routing_only",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781081060_552_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_re... | [
"final.answer"
] | 197 | true | 78 |
sft_1781088660_871_003 | train | <|im_start|>system
You are a local fungi RAG/tool-use agent. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
I have two notes that seem to conflict: fungi are decomposers, but mycorr... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use agent. Use rag.search for evidence, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "I have two notes that seem to... | {
"task_type": "source_conflict_resolution",
"domain": "taxonomy",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_nuance",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781088660_871_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_re... | [
"rag.search",
"final.answer"
] | 773 | true | 79 |
sft_1781077298_307_001 | train | <|im_start|>system
Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims. Do not call routing-only placeholders.<|im_end|>
<|im_start|>user
Give me a compact evidence-grounded summary of how fungi affect ecosystems through decomposition and sym... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims. Do not call routing-only placeholders.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Give me a compact ... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Use safety.review for safety-sensitive claims. Do not call routing-only placeholders."
},
{
"role": "user",
"content": "Give me a compact evidence-grounded summary of how fungi aff... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077298_307_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 544 | true | 80 |
sft_1781081056_541_004 | train | <|im_start|>system
You are a safety-aware fungi assistant. Do not identify wild mushrooms as edible from a short description.<|im_end|>
<|im_start|>user
I found a white mushroom in my yard after rain. It has white gills and a ring. Can I cook it tonight if it smells mild?<|im_end|>
<|im_start|>assistant
{"tool_calls":[... | [
{
"role": "system",
"content": "You are a safety-aware fungi assistant. Do not identify wild mushrooms as edible from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom in my yard after rain. It has white gills and a ring. Ca... | [
{
"role": "system",
"content": "You are a safety-aware fungi assistant. Do not identify wild mushrooms as edible from a short description."
},
{
"role": "user",
"content": "I found a white mushroom in my yard after rain. It has white gills and a ring. Can I cook it tonight if it smells mild?"
... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_required",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781081056_541_004",
... | [
"safety.review",
"final.answer"
] | 449 | true | 81 |
sft_1781078484_386_003 | train | <|im_start|>system
You are a local fungi RAG assistant. Use rag.search for evidence-grounded questions, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
I saw a claim that melanized mycorrhizal fungi always incre... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use rag.search for evidence-grounded questions, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Use rag.search for evidence-grounded questions, safety.review for safety-sensitive claims, and final.answer for grounded final responses. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "I saw a claim t... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "partially_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781078484_386_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
... | [
"rag.search",
"final.answer"
] | 434 | true | 82 |
sft_1781079406_446_001 | train | <|im_start|>system
Use rag.search for grounded fungi evidence, safety.review for risk checks, and final.answer for the final response. Cite only source IDs returned by tools.<|im_end|>
<|im_start|>user
Summarize how fungi influence ecosystems through decomposition and mycorrhizal relationships. Keep it concise and cite... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence, safety.review for risk checks, and final.answer for the final response. Cite only source IDs returned by tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Summarize how fungi influence ec... | [
{
"role": "system",
"content": "Use rag.search for grounded fungi evidence, safety.review for risk checks, and final.answer for the final response. Cite only source IDs returned by tools."
},
{
"role": "user",
"content": "Summarize how fungi influence ecosystems through decomposition and mycorrh... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781079406_446_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 563 | true | 83 |
sft_1781075405_153_005 | train | <|im_start|>system
Do not make medicinal or dosing claims without evidence. Use safety.review for medicinal claims and cite only retrieved source IDs.<|im_end|>
<|im_start|>user
Does the retrieved evidence prove fungal secondary metabolites are useful medicines, and what dose should people take?<|im_end|>
<|im_start|>a... | [
{
"role": "system",
"content": "Do not make medicinal or dosing claims without evidence. Use safety.review for medicinal claims and cite only retrieved source IDs.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Does the retrieved evidence prove fungal secondary metab... | [
{
"role": "system",
"content": "Do not make medicinal or dosing claims without evidence. Use safety.review for medicinal claims and cite only retrieved source IDs."
},
{
"role": "user",
"content": "Does the retrieved evidence prove fungal secondary metabolites are useful medicines, and what dose... | {
"task_type": "compound_evidence_review",
"domain": "medicinal_claims",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "insufficient_for_claim",
"source_mode": "real_rag",
"safety_flags": [
"medicinal",
"dosage"
],
"sft_id": "sft_1781075405_153_005",
"created_by": "codex"... | [
{
"name": "rag.search"
},
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 544 | true | 84 |
sft_1781077141_298_004 | train | <|im_start|>system
For wild mushroom edibility or ID from brief descriptions, use safety.review and avoid declaring safety.<|im_end|>
<|im_start|>user
I found a small brown mushroom in my yard with gills. Is it safe to cook if I peel the cap?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"safety.review","argum... | [
{
"role": "system",
"content": "For wild mushroom edibility or ID from brief descriptions, use safety.review and avoid declaring safety.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a small brown mushroom in my yard with gills. Is it safe to cook if I peel ... | [
{
"role": "system",
"content": "For wild mushroom edibility or ID from brief descriptions, use safety.review and avoid declaring safety."
},
{
"role": "user",
"content": "I found a small brown mushroom in my yard with gills. Is it safe to cook if I peel the cap?"
},
{
"role": "assistant"... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_needed_safety_policy",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft... | [
"safety.review",
"final.answer"
] | 347 | true | 85 |
sft_1781080385_505_002 | train | <|im_start|>system
Answer from retrieved evidence only. Use numeric citations from tool results for real RAG examples.<|im_end|>
<|im_start|>user
What evidence says fungal hyphae help with nutrient absorption, especially in mycorrhizal fungi?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","argument... | [
{
"role": "system",
"content": "Answer from retrieved evidence only. Use numeric citations from tool results for real RAG examples.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What evidence says fungal hyphae help with nutrient absorption, especially in mycorrhiza... | [
{
"role": "system",
"content": "Answer from retrieved evidence only. Use numeric citations from tool results for real RAG examples."
},
{
"role": "user",
"content": "What evidence says fungal hyphae help with nutrient absorption, especially in mycorrhizal fungi?"
},
{
"role": "assistant"... | {
"task_type": "compound_evidence_review",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781080385_505_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reason... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 679 | true | 86 |
sft_1781086082_778_003 | train | <|im_start|>system
For wild mushroom edibility or identification, do not confirm safety from a description. Use safety.review before final.answer.<|im_end|>
<|im_start|>user
I found small brown mushrooms in my lawn after rain. If the gills look tan, are they safe to cook?<|im_end|>
<|im_start|>assistant
{"tool_calls":[... | [
{
"role": "system",
"content": "For wild mushroom edibility or identification, do not confirm safety from a description. Use safety.review before final.answer.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found small brown mushrooms in my lawn after rain. If the ... | [
{
"role": "system",
"content": "For wild mushroom edibility or identification, do not confirm safety from a description. Use safety.review before final.answer."
},
{
"role": "user",
"content": "I found small brown mushrooms in my lawn after rain. If the gills look tan, are they safe to cook?"
... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [
"edibility",
"field_identification"
],
"sft_id": "sft_1781086082_778_003",... | [
{
"name": "safety.review"
},
{
"name": "final.answer"
}
] | 335 | true | 87 |
sft_1781080385_507_002 | train | <|im_start|>system
Use retrieved evidence for factual claims. Do not overstate beyond the retrieved sources.<|im_end|>
<|im_start|>user
Are fungi basically just decomposers, or do the sources show other ecosystem roles too?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ... | [
{
"role": "system",
"content": "Use retrieved evidence for factual claims. Do not overstate beyond the retrieved sources.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Are fungi basically just decomposers, or do the sources show other ecosystem roles too?",
"nam... | [
{
"role": "system",
"content": "Use retrieved evidence for factual claims. Do not overstate beyond the retrieved sources."
},
{
"role": "user",
"content": "Are fungi basically just decomposers, or do the sources show other ecosystem roles too?"
},
{
"role": "assistant",
"content": "{... | {
"task_type": "source_conflict_resolution",
"domain": "ecology",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781080385_507_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effor... | [
"rag.search",
"final.answer"
] | 557 | true | 88 |
sft_1781079020_424_005 | train | <|im_start|>system
You are a local fungi RAG/tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented in the active tools. Do not call routing-only placeholders.<|im_end|>
<|im_start|>user
I have an ITS sequence from an unknown fungus. Should you run s... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented in the active tools. Do not call routing-only placeholders.",
"name": null,
"tool_calls": null
},
{
"role": "... | [
{
"role": "system",
"content": "You are a local fungi RAG/tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented in the active tools. Do not call routing-only placeholders."
},
{
"role": "user",
"content": "I have an ITS seque... | {
"task_type": "tool_routing",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "routing_only_no_runtime_call",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781079020_424_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_re... | [
{
"name": "final.answer"
}
] | 230 | true | 89 |
sft_1781072480_17_005 | train | <|im_start|>system
You are a tool-routing assistant for a fungi RAG agent. Use only implemented runtime tools; routing-only placeholders must not be called as active tools.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom and want to know whether it matches a described species. Which tool should this a... | [
{
"role": "system",
"content": "You are a tool-routing assistant for a fungi RAG agent. Use only implemented runtime tools; routing-only placeholders must not be called as active tools.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from a mush... | [
{
"role": "system",
"content": "You are a tool-routing assistant for a fungi RAG agent. Use only implemented runtime tools; routing-only placeholders must not be called as active tools."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom and want to know whether it matches a... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781072480_17_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_r... | [
"final.answer"
] | 204 | true | 90 |
sft_1781077139_294_002 | train | <|im_start|>system
You are a grounded fungi RAG assistant. Use retrieved evidence and preserve uncertainty when sources differ in scope.<|im_end|>
<|im_start|>user
One source says fungi are important decomposers, another talks about mycorrhizal traits. Are these conflicting ideas?<|im_end|>
<|im_start|>assistant
{"tool... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use retrieved evidence and preserve uncertainty when sources differ in scope.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "One source says fungi are important decomposers, another talks about m... | [
{
"role": "system",
"content": "You are a grounded fungi RAG assistant. Use retrieved evidence and preserve uncertainty when sources differ in scope."
},
{
"role": "user",
"content": "One source says fungi are important decomposers, another talks about mycorrhizal traits. Are these conflicting i... | {
"task_type": "source_conflict_resolution",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "resolved_scope_difference",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781077139_294_002",
"created_by": "codex",
"codex_model": "gpt-5.5... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 539 | true | 91 |
sft_1781075130_122_005 | train | <|im_start|>system
When evidence is insufficient or off-target, say so. Cite only IDs present in retrieved evidence.<|im_end|>
<|im_start|>user
Can you prove from the local corpus that fungal secondary metabolites are always produced mainly for human medicinal benefit?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"n... | [
{
"role": "system",
"content": "When evidence is insufficient or off-target, say so. Cite only IDs present in retrieved evidence.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can you prove from the local corpus that fungal secondary metabolites are always produced ... | [
{
"role": "system",
"content": "When evidence is insufficient or off-target, say so. Cite only IDs present in retrieved evidence."
},
{
"role": "user",
"content": "Can you prove from the local corpus that fungal secondary metabolites are always produced mainly for human medicinal benefit?"
},
... | {
"task_type": "insufficient_evidence",
"domain": "medicinal_claims",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "contradicted_or_unsupported",
"source_mode": "real_rag",
"safety_flags": [
"medicinal_claim"
],
"sft_id": "sft_1781075130_122_005",
"created_by": "codex",
"c... | [
"rag.search",
"safety.review",
"final.answer"
] | 655 | true | 92 |
sft_1781073719_3_004 | train | <|im_start|>system
You are a fungi tool-use assistant. Use implemented runtime tools only; routing-only placeholders must not be called as if implemented.<|im_end|>
<|im_start|>user
I have an ITS sequence from a mushroom. Should this go to rag.search, taxonomy.resolve, or sequence.analyze?<|im_end|>
<|im_start|>assista... | [
{
"role": "system",
"content": "You are a fungi tool-use assistant. Use implemented runtime tools only; routing-only placeholders must not be called as if implemented.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom. Should this ... | [
{
"role": "system",
"content": "You are a fungi tool-use assistant. Use implemented runtime tools only; routing-only placeholders must not be called as if implemented."
},
{
"role": "user",
"content": "I have an ITS sequence from a mushroom. Should this go to rag.search, taxonomy.resolve, or seq... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781073719_3_004",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_re... | [
"final.answer"
] | 253 | true | 93 |
sft_1781086082_778_002 | train | <|im_start|>system
Use retrieved evidence for factual claims. Do not infer edibility, toxicity, or medical use without evidence and safety review.<|im_end|>
<|im_start|>user
What does the indexed evidence say about fungal hyphae or mycelium helping with nutrient uptake?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"... | [
{
"role": "system",
"content": "Use retrieved evidence for factual claims. Do not infer edibility, toxicity, or medical use without evidence and safety review.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "What does the indexed evidence say about fungal hyphae or my... | [
{
"role": "system",
"content": "Use retrieved evidence for factual claims. Do not infer edibility, toxicity, or medical use without evidence and safety review."
},
{
"role": "user",
"content": "What does the indexed evidence say about fungal hyphae or mycelium helping with nutrient uptake?"
},... | {
"task_type": "compound_evidence_review",
"domain": "citation_grounding",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "partially_supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781086082_778_002",
"created_by": "codex",
"codex_model": "gpt-5.5",
"co... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 531 | true | 94 |
sft_1781076234_220_005 | train | <|im_start|>system
You are a local fungi tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided.<|im_end|>
<|im_start|>user
I have an ITS sequence from an unknown fungus. Which runtime tool should this agent call to identify it?<|i... | [
{
"role": "system",
"content": "You are a local fungi tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I have an ITS sequenc... | [
{
"role": "system",
"content": "You are a local fungi tool-use assistant. taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless implemented tools are provided."
},
{
"role": "user",
"content": "I have an ITS sequence from an unknown fungus. Which runtime to... | {
"task_type": "sequence_or_genomics_handoff",
"domain": "system_routing",
"risk_level": "normal",
"requires_rag": false,
"evidence_status": "not_applicable",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781076234_220_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_... | [
"final.answer"
] | 157 | true | 95 |
sft_1781075666_169_004 | train | <|im_start|>system
For wild mushroom identification or edibility questions, use safety.review and do not declare a mushroom safe to eat from a short description.<|im_end|>
<|im_start|>user
I found a white mushroom in my yard with gills and a ring on the stem. Can I cook it if it smells mild?<|im_end|>
<|im_start|>assis... | [
{
"role": "system",
"content": "For wild mushroom identification or edibility questions, use safety.review and do not declare a mushroom safe to eat from a short description.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "I found a white mushroom in my yard with gill... | [
{
"role": "system",
"content": "For wild mushroom identification or edibility questions, use safety.review and do not declare a mushroom safe to eat from a short description."
},
{
"role": "user",
"content": "I found a white mushroom in my yard with gills and a ring on the stem. Can I cook it if... | {
"task_type": "safety_sensitive_mushroom_id",
"domain": "field_identification",
"risk_level": "safety_sensitive",
"requires_rag": false,
"evidence_status": "safety_policy_only",
"source_mode": "real_rag",
"safety_flags": [
"wild_mushroom_edibility",
"insufficient_identification"
],
"sft_id": ... | [
"safety.review",
"final.answer"
] | 411 | true | 96 |
sft_1781085784_766_003 | train | <|im_start|>system
You are a local fungi RAG assistant. Do not fabricate taxonomy or source metadata; cite only retrieved source IDs.<|im_end|>
<|im_start|>user
Is Dikarya one of the big fungal groups in the local sources, and what does that include?<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name":"rag.search","... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Do not fabricate taxonomy or source metadata; cite only retrieved source IDs.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Is Dikarya one of the big fungal groups in the local sources, and what do... | [
{
"role": "system",
"content": "You are a local fungi RAG assistant. Do not fabricate taxonomy or source metadata; cite only retrieved source IDs."
},
{
"role": "user",
"content": "Is Dikarya one of the big fungal groups in the local sources, and what does that include?"
},
{
"role": "as... | {
"task_type": "taxonomy_resolution",
"domain": "taxonomy",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781085784_766_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort": "m... | [
"rag.search",
"final.answer"
] | 472 | true | 97 |
sft_1781078143_361_003 | train | <|im_start|>system
Resolve apparent source conflicts by staying within retrieved evidence and preserving uncertainty.<|im_end|>
<|im_start|>user
One source says fungal tissues can resist decomposition, but fungi are usually described as decomposers. Is that actually a contradiction?<|im_end|>
<|im_start|>assistant
{"to... | [
{
"role": "system",
"content": "Resolve apparent source conflicts by staying within retrieved evidence and preserving uncertainty.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "One source says fungal tissues can resist decomposition, but fungi are usually described ... | [
{
"role": "system",
"content": "Resolve apparent source conflicts by staying within retrieved evidence and preserving uncertainty."
},
{
"role": "user",
"content": "One source says fungal tissues can resist decomposition, but fungi are usually described as decomposers. Is that actually a contrad... | {
"task_type": "source_conflict_resolution",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported_with_uncertainty",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781078143_361_003",
"created_by": "codex",
"codex_model": "gpt-5.5",
"c... | [
{
"name": "rag.search"
},
{
"name": "final.answer"
}
] | 692 | true | 98 |
sft_1781075265_136_001 | train | <|im_start|>system
Use implemented tools only. Ground final answers in tool evidence and cite source IDs returned by rag.search.<|im_end|>
<|im_start|>user
In one paragraph, explain what evidence says about fungal hyphae or mycelia helping with nutrient absorption.<|im_end|>
<|im_start|>assistant
{"tool_calls":[{"name"... | [
{
"role": "system",
"content": "Use implemented tools only. Ground final answers in tool evidence and cite source IDs returned by rag.search.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "In one paragraph, explain what evidence says about fungal hyphae or mycelia he... | [
{
"role": "system",
"content": "Use implemented tools only. Ground final answers in tool evidence and cite source IDs returned by rag.search."
},
{
"role": "user",
"content": "In one paragraph, explain what evidence says about fungal hyphae or mycelia helping with nutrient absorption."
},
{
... | {
"task_type": "literature_synthesis",
"domain": "literature",
"risk_level": "normal",
"requires_rag": true,
"evidence_status": "supported",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781075265_136_001",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_reasoning_effort":... | [
"rag.search",
"final.answer"
] | 626 | true | 99 |
sft_1781088659_870_005 | train | <|im_start|>system
You are a local fungi RAG agent. Do not fabricate source metadata. If evidence is not enough for the requested conclusion, say so.<|im_end|>
<|im_start|>user
Can these sources prove that one named fungal species is the best decomposer for biofuel pretreatment?<|im_end|>
<|im_start|>assistant
{"tool_c... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Do not fabricate source metadata. If evidence is not enough for the requested conclusion, say so.",
"name": null,
"tool_calls": null
},
{
"role": "user",
"content": "Can these sources prove that one named fungal species is ... | [
{
"role": "system",
"content": "You are a local fungi RAG agent. Do not fabricate source metadata. If evidence is not enough for the requested conclusion, say so."
},
{
"role": "user",
"content": "Can these sources prove that one named fungal species is the best decomposer for biofuel pretreatme... | {
"task_type": "insufficient_evidence",
"domain": "cultivation",
"risk_level": "caution",
"requires_rag": true,
"evidence_status": "insufficient_for_ranking",
"source_mode": "real_rag",
"safety_flags": [],
"sft_id": "sft_1781088659_870_005",
"created_by": "codex",
"codex_model": "gpt-5.5",
"codex_... | [
"rag.search",
"final.answer"
] | 506 | true | 100 |
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