Datasets:

JacktheLander
/

fungi-rag-agent-sft-database

example_id stringlengths 19 22 ⌀	split stringclasses 1 value	text stringlengths 527 3.85k ⌀	messages listlengths 2 8	training_messages listlengths 2 8 ⌀	metadata dict	tools listlengths 0 5	token_length int64 89 946 ⌀	assistant_only_loss bool 1 class	source_line int64 1 3.39k ⌀
sft_1781076374_237_004	train	<\|im_start\|>system For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description.<\|im_end\|> <\|im_start\|>user I found a tan mushroom under an oak after rain. It smells mild and has white gills. Can I cook it tonight?<\|im_end\|> <\|im_start\|>assistant {"...	[ { "role": "system", "content": "For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description.", "name": null, "tool_calls": null }, { "role": "user", "content": "I found a tan mushroom under an oak after rain. It smel...	[ { "role": "system", "content": "For mushroom edibility or field identification, use safety.review and avoid declaring a wild mushroom safe from a brief description." }, { "role": "user", "content": "I found a tan mushroom under an oak after rain. It smells mild and has white gills. Can I cook it...	{ "task_type": "safety_sensitive_mushroom_id", "domain": "field_identification", "risk_level": "safety_sensitive", "requires_rag": false, "evidence_status": "not_applicable_safety_policy", "source_mode": "real_rag", "safety_flags": [ "wild_mushroom_edibility", "insufficient_identification" ], ...	[ "safety.review", "final.answer" ]	406	true	1
sft_1781077972_352_001	train	<\|im_start\|>system You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools.<\|im_end\|> <\|im_start\|>user Summarize the ecological roles of fungi in decomposition and symbiosis...	[ { "role": "system", "content": "You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools.", "name": null, "tool_calls": null }, { "role": "user", ...	[ { "role": "system", "content": "You are a fungi RAG assistant. Use rag.search for evidence-backed questions, safety.review for safety-sensitive claims, and final.answer before the final response. Cite only source IDs returned by tools." }, { "role": "user", "content": "Summarize the ecological r...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781077972_352_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "final.answer" ]	587	true	2
sft_1781075955_195_005	train	<\|im_start\|>system Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called.<\|im_end\|> <\|im_start\|>user I have an ITS sequence from a fungal isolate and want to know whether it matches a known species. Which tool should this agent use right now?<\|im_end\|> <\|im_start...	[ { "role": "system", "content": "Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called.", "name": null, "tool_calls": null }, { "role": "user", "content": "I have an ITS sequence from a fungal isolate and want to know whether it mat...	[ { "role": "system", "content": "Route to implemented tools only. Placeholder tools may be discussed as future workflows but must not be called." }, { "role": "user", "content": "I have an ITS sequence from a fungal isolate and want to know whether it matches a known species. Which tool should th...	{ "task_type": "sequence_or_genomics_handoff", "domain": "genomics", "risk_level": "normal", "requires_rag": false, "evidence_status": "no_rag_needed", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781075955_195_005", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoni...	[]	215	true	3
sft_1781075670_178_001	train	<\|im_start\|>system Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence.<\|im_end\|> <\|im_start\|>user Summarize evidence that fungal hyphae can help nutrient absorption, especially in plant-associated fungi.<\|im_end\|> <\|im_start\|>assistant {"tool_calls":...	[ { "role": "system", "content": "Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence.", "name": null, "tool_calls": null }, { "role": "user", "content": "Summarize evidence that fungal hyphae can help nutrient absorption...	[ { "role": "system", "content": "Use only implemented tools. Ground final answers in retrieved evidence and cite numeric source IDs for real RAG evidence." }, { "role": "user", "content": "Summarize evidence that fungal hyphae can help nutrient absorption, especially in plant-associated fungi." ...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781075670_178_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "safety.review", "final.answer" ]	542	true	4
sft_1781080387_511_005	train	<\|im_start\|>system Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits.<\|im_end\|> <\|im_start\|>user For a general biology note, connect fungal decomposition of wood with possible biofuel relevance, but avoid lab protocol details.<\|im_end\|> <\|im_start\|>assist...	[ { "role": "system", "content": "Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits.", "name": null, "tool_calls": null }, { "role": "user", "content": "For a general biology note, connect fungal decomposition of wood with po...	[ { "role": "system", "content": "Use only implemented tools. Cite only source IDs returned by tool messages. Preserve uncertainty and safety limits." }, { "role": "user", "content": "For a general biology note, connect fungal decomposition of wood with possible biofuel relevance, but avoid lab pr...	{ "task_type": "cultivation_troubleshooting", "domain": "cultivation", "risk_level": "caution", "requires_rag": true, "evidence_status": "supported_high_level", "source_mode": "real_rag", "safety_flags": [ "avoid_protocol_details" ], "sft_id": "sft_1781080387_511_005", "created_by": "codex", "...	[ "rag.search", "safety.review", "final.answer" ]	796	true	5
sft_1781080180_498_004	train	<\|im_start\|>system You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect.<\|im_end\|> <\|im_start\|>user I found a tan mushroom under an oak. It smells nice and has white gills. Can I cook it tonight?<\|im_end\|> <\|im_start\|>assi...	[ { "role": "system", "content": "You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect.", "name": null, "tool_calls": null }, { "role": "user", "content": "I found a tan mushroom under an oak....	[ { "role": "system", "content": "You are a fungi assistant. Safety-sensitive edibility and wild mushroom identification requests require safety review and cautious refusal or redirect." }, { "role": "user", "content": "I found a tan mushroom under an oak. It smells nice and has white gills. Can I...	{ "task_type": "safety_sensitive_mushroom_id", "domain": "field_identification", "risk_level": "safety_sensitive", "requires_rag": false, "evidence_status": "safety_policy", "source_mode": "real_rag", "safety_flags": [ "wild_mushroom_edibility", "insufficient_identification" ], "sft_id": "sft_...	[]	383	true	6
sft_1781075267_141_001	train	<\|im_start\|>system You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty.<\|im_end\|> <\|im_start\|>user Summarize the evidence that fungal hyphae or mycelium can help with nutrient absorption, especially in mycorrhizal contexts.<\|im_end\|> <\|im_start...	[ { "role": "system", "content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty.", "name": null, "tool_calls": null }, { "role": "user", "content": "Summarize the evidence that fungal hyphae or mycelium can h...	[ { "role": "system", "content": "You are a fungi RAG assistant. Use implemented tools only. Ground factual claims in retrieved evidence and preserve uncertainty." }, { "role": "user", "content": "Summarize the evidence that fungal hyphae or mycelium can help with nutrient absorption, especially i...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781075267_141_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "final.answer" ]	638	true	7
sft_1781084609_714_002	train	<\|im_start\|>system Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial.<\|im_end\|> <\|im_start\|>user What ecosystem roles are supported for fungi in this corpus: decomposition, mycorrhizal symbiosis, or both? Keep it short.<\|im_end\|> <\|im...	[ { "role": "system", "content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial.", "name": null, "tool_calls": null }, { "role": "user", "content": "What ecosystem roles are supported for fungi in thi...	[ { "role": "system", "content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools. Preserve uncertainty when evidence is partial." }, { "role": "user", "content": "What ecosystem roles are supported for fungi in this corpus: decomposition, mycorrhizal symbi...	{ "task_type": "literature_synthesis", "domain": "ecology", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781084609_714_002", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort": "m...	[ "rag.search", "final.answer" ]	497	true	8
sft_1781089030_885_004	train	<\|im_start\|>system You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk.<\|im_end\|> <\|im_start\|>user I found a white mushroom in my yard with free-looking gills. Is it safe to cook if I peel the c...	[ { "role": "system", "content": "You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk.", "name": null, "tool_calls": null }, { "role": "user", "content": "I found a...	[ { "role": "system", "content": "You are a local fungi RAG/tool-use agent. Do not identify wild mushrooms as edible or safe from short descriptions. Use safety.review for field identification and edibility risk." }, { "role": "user", "content": "I found a white mushroom in my yard with free-looki...	{ "task_type": "safety_sensitive_mushroom_id", "domain": "field_identification", "risk_level": "safety_sensitive", "requires_rag": false, "evidence_status": "safety_policy_only", "source_mode": "real_rag", "safety_flags": [ "edibility", "field_identification" ], "sft_id": "sft_1781089030_885_0...	[ "safety.review", "final.answer" ]	373	true	9
sft_1781082477_614_003	train	<\|im_start\|>system You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence.<\|im_end\|> <\|im_start\|>user Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecos...	[ { "role": "system", "content": "You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence.", "name": null, "tool_calls": null }, { "role": "user", "content": "Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?", "name": ...	[ { "role": "system", "content": "You are a local fungi RAG/tool-use agent. Do not overstate retrieved evidence." }, { "role": "user", "content": "Does the evidence show that melanin in mycorrhizal fungi always increases soil carbon storage?" }, { "role": "assistant", "content": "{\"to...	{ "task_type": "source_conflict_resolution", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "partial", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781082477_614_003", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reason...	[ "rag.search", "final.answer" ]	428	true	10
sft_1781081284_556_003	train	<\|im_start\|>system You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited.<\|im_end\|> <\|im_start\|>user Do fungi always increase soil carbon storage?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecosystem decomposition mycorrh...	[ { "role": "system", "content": "You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited.", "name": null, "tool_calls": null }, { "role": "user", "content": "Do fungi always increase soil carbon storage?", "name": null, "tool_calls": nul...	[ { "role": "system", "content": "You are a fungi RAG agent. Do not overstate evidence when retrieved sources are indirect or limited." }, { "role": "user", "content": "Do fungi always increase soil carbon storage?" }, { "role": "assistant", "content": "{\"tool_calls\":[{\"name\":\"rag...	{ "task_type": "source_conflict_resolution", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "limited_context_dependent", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781081284_556_003", "created_by": "codex", "codex_model": "gpt-5.5...	[ "rag.search", "final.answer" ]	368	true	11
sft_1781073721_6_001	train	<\|im_start\|>system Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools.<\|im_end\|> <\|im_start\|>user What evidence supports the idea that fungal hyphae help with nutrient absorption?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search","arguments":{"query":"fungal hypha...	[ { "role": "system", "content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools.", "name": null, "tool_calls": null }, { "role": "user", "content": "What evidence supports the idea that fungal hyphae help with nutrient absorption?", "name": nu...	[ { "role": "system", "content": "Use rag.search for evidence-backed fungi answers. Cite only source IDs returned by tools." }, { "role": "user", "content": "What evidence supports the idea that fungal hyphae help with nutrient absorption?" }, { "role": "assistant", "content": "{\"tool...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781073721_6_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort": "...	[ "rag.search", "final.answer" ]	546	true	12
sft_1781080841_537_002	train	<\|im_start\|>system Use only implemented tools. Routing-only placeholders must not be called unless implemented.<\|im_end\|> <\|im_start\|>user Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?<\|im_end\|> <\|im_start\|>assistant Route this as a sequence_or_genomics_handoff. In this run...	[ { "role": "system", "content": "Use only implemented tools. Routing-only placeholders must not be called unless implemented.", "name": null, "tool_calls": null }, { "role": "user", "content": "Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?", ...	[ { "role": "system", "content": "Use only implemented tools. Routing-only placeholders must not be called unless implemented." }, { "role": "user", "content": "Which tool should I use if a user asks for an ITS sequence comparison of a mushroom sample?" }, { "role": "assistant", "conte...	{ "task_type": "tool_routing", "domain": "system_routing", "risk_level": "normal", "requires_rag": false, "evidence_status": "no_rag_needed", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781080841_537_002", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort"...	[ "final.answer" ]	129	true	13
sft_1781075266_139_003	train	<\|im_start\|>system You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.<\|im_end\|> <\|im_start\|>user I found mushrooms under an oak after rain. They have brown caps and white gills. Are they safe to cook...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools.", "name": null, "tool_calls": null }, { "role": "user", "content": "I found mushroom...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. Use rag.search for evidence when needed, run safety.review for safety-sensitive claims, and cite only source IDs returned by tools." }, { "role": "user", "content": "I found mushrooms under an oak after rain. They have brown...	{ "task_type": "safety_sensitive_mushroom_id", "domain": "field_identification", "risk_level": "safety_sensitive", "requires_rag": false, "evidence_status": "safety_policy_only", "source_mode": "real_rag", "safety_flags": [ "wild_mushroom_edibility", "insufficient_identification" ], "sft_id": ...	[ "safety.review", "final.answer" ]	365	true	14
sft_1781077297_304_003	train	<\|im_start\|>system Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence.<\|im_end\|> <\|im_start\|>user Can I conclude that melanized mycorrhizal fungi always increase soil carbon storage in dry soils?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":...	[ { "role": "system", "content": "Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence.", "name": null, "tool_calls": null }, { "role": "user", "content": "Can I conclude that melanized mycorrhizal fungi always inc...	[ { "role": "system", "content": "Use rag.search for grounded fungi answers. Cite only source IDs returned by tools. Do not overstate weak or conditional evidence." }, { "role": "user", "content": "Can I conclude that melanized mycorrhizal fungi always increase soil carbon storage in dry soils?" ...	{ "task_type": "source_conflict_resolution", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "partial_overclaim_corrected", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781077297_304_003", "created_by": "codex", "codex_model": "gpt-5...	[ "rag.search", "final.answer" ]	459	true	15
sft_1781080178_493_002	train	<\|im_start\|>system Use implemented tools only. Do not invent citations or source metadata.<\|im_end\|> <\|im_start\|>user Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships.<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search","arguments":{"query":"fungi ecosys...	[ { "role": "system", "content": "Use implemented tools only. Do not invent citations or source metadata.", "name": null, "tool_calls": null }, { "role": "user", "content": "Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships.", "name": nu...	[ { "role": "system", "content": "Use implemented tools only. Do not invent citations or source metadata." }, { "role": "user", "content": "Summarize two ecosystem roles of fungi: decomposition-related traits and mycorrhizal relationships." }, { "role": "assistant", "content": "{\"tool...	{ "task_type": "literature_synthesis", "domain": "ecology", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781080178_493_002", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort": "m...	[ { "name": "rag.search" }, { "name": "final.answer" } ]	442	true	16
sft_1781073719_2_001	train	<\|im_start\|>system Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty.<\|im_end\|> <\|im_start\|>user Summarize what the retrieved literature says about fungal roles in ecosystems, especially decomposition and mycorrhizal symbiosis.<\|im_end\|> <\|im_start\|>assistant {"too...	[ { "role": "system", "content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty.", "name": null, "tool_calls": null }, { "role": "user", "content": "Summarize what the retrieved literature says about fungal roles in ecosystems, esp...	[ { "role": "system", "content": "Use rag.search for grounded fungi evidence. Cite only source IDs returned by tools. Preserve uncertainty." }, { "role": "user", "content": "Summarize what the retrieved literature says about fungal roles in ecosystems, especially decomposition and mycorrhizal symb...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781073719_2_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort": "...	[ "rag.search", "final.answer" ]	659	true	17
sft_1781082220_605_001	train	<\|im_start\|>system Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs.<\|im_end\|> <\|im_start\|>user Give me a short evidence-grounded summary of how fungi affect ecosystem processes through decomposition and symbiosis.<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"...	[ { "role": "system", "content": "Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs.", "name": null, "tool_calls": null }, { "role": "user", "content": "Give me a short evidence-grounded summary of how fungi affect ecosystem processes through...	[ { "role": "system", "content": "Use implemented tools only. Ground final claims in retrieved evidence and cite numeric source IDs." }, { "role": "user", "content": "Give me a short evidence-grounded summary of how fungi affect ecosystem processes through decomposition and symbiosis." }, { ...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781082220_605_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "final.answer" ]	515	true	18
sft_1781075668_173_001	train	<\|im_start\|>system Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence.<\|im_end\|> <\|im_start\|>user Summarize what the local sources say about how fungi influence ecosystem processes, especially decomposition and mycorrhizal effects.<\|im_end\|> <\|im_st...	[ { "role": "system", "content": "Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence.", "name": null, "tool_calls": null }, { "role": "user", "content": "Summarize what the local sources say about how fungi influence ec...	[ { "role": "system", "content": "Use implemented tools only. Ground factual claims in retrieved evidence and cite numeric source IDs for real RAG evidence." }, { "role": "user", "content": "Summarize what the local sources say about how fungi influence ecosystem processes, especially decompositio...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781075668_173_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "final.answer" ]	540	true	19
sft_1781072162_6_005	train	<\|im_start\|>system You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented.<\|im_end\|> <\|im_start\|>user I have an ITS sequence from a mushroom and want to know whether this system can run a databa...	[ { "role": "system", "content": "You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented.", "name": null, "tool_calls": null }, { "role": "user", "content": "I have...	[ { "role": "system", "content": "You are a local fungi RAG assistant. Use implemented tools only; taxonomy.resolve, literature.find, and sequence.analyze are routing-only placeholders unless explicitly implemented." }, { "role": "user", "content": "I have an ITS sequence from a mushroom and want ...	{ "task_type": "sequence_or_genomics_handoff", "domain": "genomics", "risk_level": "caution", "requires_rag": false, "evidence_status": "no_rag_needed", "source_mode": "real_rag", "safety_flags": [ "field_identification" ], "sft_id": "sft_1781072162_6_005", "created_by": "codex", "codex_model"...	[]	253	true	20
sft_1781077800_337_001	train	<\|im_start\|>system You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools.<\|im_end\|> <\|im_start\|>user Give me a compact evidence-backed explanation of how fungal hyphae support nutrient absorption.<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"na...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools.", "name": null, "tool_calls": null }, { "role": "user", "content": "Give me a compact evidence-backed explanation of how fungal h...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. Use rag.search for evidence-backed answers and cite only source IDs returned by tools." }, { "role": "user", "content": "Give me a compact evidence-backed explanation of how fungal hyphae support nutrient absorption." }, ...	{ "task_type": "literature_synthesis", "domain": "literature", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781077800_337_001", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reasoning_effort":...	[ "rag.search", "final.answer" ]	726	true	21
sft_1781087643_830_005	train	<\|im_start\|>system You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps.<\|im_end\|> <\|im_start\|>user Do these retrieved sources prove that all fungi improve plant nutrient uptake?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search",...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps.", "name": null, "tool_calls": null }, { "role": "user", "content": "Do these retrieved sources prove that all fungi improve plant...	[ { "role": "system", "content": "You are a grounded fungi RAG assistant. When evidence is incomplete or not directly responsive, say so and avoid filling gaps." }, { "role": "user", "content": "Do these retrieved sources prove that all fungi improve plant nutrient uptake?" }, { "role": "a...	{ "task_type": "insufficient_evidence", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "partial_support", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781087643_830_005", "created_by": "codex", "codex_model": "gpt-5.5", "codex_rea...	[ "rag.search", "final.answer" ]	444	true	22
sft_1781075958_202_002	train	<\|im_start\|>system Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools.<\|im_end\|> <\|im_start\|>user Does the evidence say fungal hyphae absorb nutrients directly, or only that they help plants get nutrients?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"r...	[ { "role": "system", "content": "Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools.", "name": null, "tool_calls": null }, { "role": "user", "content": "Does the evidence say fungal hyphae absorb nutrients directly, or only that the...	[ { "role": "system", "content": "Use implemented tools only. Do not invent citations or treat routing placeholders as callable runtime tools." }, { "role": "user", "content": "Does the evidence say fungal hyphae absorb nutrients directly, or only that they help plants get nutrients?" }, { ...	{ "task_type": "source_conflict_resolution", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "supported_with_scope_limits", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781075958_202_002", "created_by": "codex", "codex_model": "gpt-5...	[ "rag.search", "final.answer" ]	431	true	23
sft_1781088660_872_002	train	<\|im_start\|>system Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial.<\|im_end\|> <\|im_start\|>user Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis with plants?<\|im_end\|> <\|im_start\|>assistant {"tool_calls":[{"name":"rag.search","argumen...	[ { "role": "system", "content": "Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial.", "name": null, "tool_calls": null }, { "role": "user", "content": "Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis wit...	[ { "role": "system", "content": "Use retrieved evidence for scientific claims. Preserve uncertainty when evidence is partial." }, { "role": "user", "content": "Do fungi mainly matter in ecosystems because they decompose things, or because of symbiosis with plants?" }, { "role": "assistant...	{ "task_type": "source_conflict_resolution", "domain": "citation_grounding", "risk_level": "normal", "requires_rag": true, "evidence_status": "partial", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781088660_872_002", "created_by": "codex", "codex_model": "gpt-5.5", "codex_reason...	[ "rag.search", "final.answer" ]	525	true	24
sft_1781087643_832_004	train	<\|im_start\|>system Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages.<\|im_end\|> <\|im_start\|>user I found a smooth white mushroom in my lawn after rain. The gills look pale and the cap is about 6 cm wide. Is it safe to cook tonight?<...	[ { "role": "system", "content": "Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages.", "name": null, "tool_calls": null }, { "role": "user", "content": "I found a smooth white mushroom in my lawn after ...	[ { "role": "system", "content": "Use rag.search for grounded fungal evidence. Use safety.review for safety-sensitive claims. Cite only source IDs present in tool messages." }, { "role": "user", "content": "I found a smooth white mushroom in my lawn after rain. The gills look pale and the cap is a...	{ "task_type": "safety_sensitive_mushroom_id", "domain": "field_identification", "risk_level": "safety_sensitive", "requires_rag": false, "evidence_status": "not_applicable", "source_mode": "real_rag", "safety_flags": [ "wild_mushroom_edibility", "insufficient_identification" ], "sft_id": "sft...	[ { "name": "safety.review" }, { "name": "final.answer" } ]	368	true	25
sft_1781074997_112_004	train	<\|im_start\|>system Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response.<\|im_end\|> <\|im_start\|>user I have an ITS sequence from an unknown mold. Which runtime tool should handle BLAST-style matching and alignment?<\|im_end\|> <\|im_s...	[ { "role": "system", "content": "Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response.", "name": null, "tool_calls": null }, { "role": "user", "content": "I have an ITS sequence from an unknown mold....	[ { "role": "system", "content": "Do not call routing-only placeholder tools as implemented runtime tools. Explain the correct route and use final.answer for the final response." }, { "role": "user", "content": "I have an ITS sequence from an unknown mold. Which runtime tool should handle BLAST-st...	{ "task_type": "sequence_or_genomics_handoff", "domain": "genomics", "risk_level": "normal", "requires_rag": false, "evidence_status": "not_applicable_routing", "source_mode": "real_rag", "safety_flags": [], "sft_id": "sft_1781074997_112_004", "created_by": "codex", "codex_model": "gpt-5.5", "code...	[ "final.answer" ]	151	true	26

End of preview. Expand in Data Studio

Fungi RAG Agent SFT Database

This dataset contains the supervised fine-tuning database used to train the JacktheLander/smollm2-1.7b-fungi-rag-agent-distill-lora-gguf adapter.

It was built for the project-owned fungi RAG learning system:

JacktheLander/FunghiResearchAgent

The examples teach a small local language model to follow the system's agent contract:

use rag.search for evidence-backed mycology answers,
use safety.review for wild-mushroom edibility, field-identification, and other safety-sensitive prompts,
cite only numeric source IDs returned by retrieval tools,
avoid unsupported claims,
refuse or redirect unsafe identification/edibility requests,
express uncertainty when evidence is partial, missing, or conflicting.

Splits

The exact prepared files used for SFT are in prepared/:

File	Examples	Description
`prepared/train.jsonl`	3,387	Training split rendered for chat-template SFT
`prepared/val.jsonl`	298	Validation split
`prepared/test.jsonl`	300	Held-out test split

Source export files are in source_exports/:

File	Description
`source_exports/sft_train.jsonl`	Structured source SFT training records
`source_exports/sft_val.jsonl`	Structured source SFT validation records
`source_exports/sft_test.jsonl`	Structured source SFT test records
`source_exports/redteam_safety.jsonl`	Safety/red-team evaluation prompts

Validation and dataset statistics are in metadata/.

Data Quality Summary

Prepared dataset metrics:

Metric	Value
Total prepared examples	3,985
Schema valid rate	1.000
Average token length	449.31
P95 token length	662
Max token length	946
`rag.search` tool calls	2,445
`safety.review` tool calls	1,051
Examples with citations	2,425
Unsupported citation examples	0
Citation failure count	0
Safety failure count	0
Missing required RAG calls	0
Duplicate or near-duplicate count after preparation	0

Format

Prepared records are JSON Lines. Each row includes fields such as:

example_id
split
text
messages
training_messages
metadata
tools
token_length
assistant_only_loss

The text field is the rendered chat-template training sequence. The structured messages and training_messages fields are included to make future re-rendering and audit possible.

Source And License Notes

This dataset combines generated agent examples, tool-call scaffolding, and retrieved evidence snippets used by the Fungi RAG project. The upstream source material includes open educational and scientific references with varying source licenses. Review the source metadata and original licenses before redistribution or commercial use.

This dataset is released for research and educational evaluation of the linked fungi RAG agent.

Safety

This dataset contains examples about fungi, including safety-sensitive prompts involving wild mushroom identification and edibility. The desired behavior is refusal or expert redirection.

Do not use this dataset or any model trained from it to make mushroom edibility, field-identification, medical, dosage, or emergency toxicology decisions.