ITF_pelvic / Code /whole_process.sh
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1. 创建raw_data:
python /research/phd_y3/pelvic_project/Code/divide_dataset.py
2. 预处理数据:
nnUNetv2_plan_and_preprocess -d 005 --verify_dataset_integrity
3. 训练模型:
nnUNetv2_train 005 3d_fullres 0
4. 推理模型:(这里一定要记得disable tta,要不然nnunet在inference的时候还是会做镜像反转)
nnUNetv2_predict -i /research/phd_y3/pelvic_project/Data/test_image_cases -o /research/phd_y3/pelvic_project/Code/for_nnUNet/inference_results/organ+pelvic_disable_mirror -d 005 -c 3d_fullres -f 0 -chk /research/phd_y3/pelvic_project/Code/for_nnUNet/nnUNet_results/Dataset005_organ_pelvic/nnUNetTrainer__nnUNetPlans__3d_fullres/fold_0/checkpoint_best.pth --disable_tta