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40498790
Upper Limb Apraxia Is Related to Role Participation Among Patients With Mild to Moderate Stroke.
Poststroke, patients often experience decreased role participation, partially because of cognitive impairment. However, the potential relationship between upper limb apraxia (ULA), a cognitive dysfunction, and role participation remains unclear.</AbstractText To evaluate whether ULA is related to role participation amo...
[ [ "34104033", "Blue-Light Therapy Strengthens Resting-State Effective Connectivity within Default-Mode Network after Mild TBI.", "Emerging evidence suggests that post concussive symptoms, including mood changes, may be improved through morning blue-wavelength light therapy (BLT). However, the neurobiolo...
[ [ "40710562", "Understanding the Metabolic Effects of Surgically Induced Renal Ischemia in Humans: A Temporal Approach.", "<b" ], [ "40480414", "Flexible beam-based microelectrode arrays integrated with oriented nanofiber scaffolds for electrophysiological monitoring of cardiac tissue.", ...
40509179
Towards Cytotoxic Derivatives of Cafestol.
This study focuses on the extraction, characterization, and biological evaluation of diterpenes from green coffee beans, specifically, cafestol and kahweol. These compounds, known for their potential health benefits, were isolated via optimized extraction and saponification processes. Separation was achieved using silv...
[ [ "27401805", "Quantitative hemodynamic PET imaging using image-derived arterial input function and a PET/MR hybrid scanner.", "Positron emission tomography (PET) with <sup" ], [ "30292731", "Sleep Disorders.", "Sleep disorders are frequent and can have serious consequences on patients' ...
[ [ "40647442", "The Role of ENHO in Pancreatic Adenocarcinoma: A Bioinformatics Approach.", "Pancreatic adenocarcinoma (PAAD) is an aggressive subtype of pancreatic cancer that is estimated to have a 5-year overall survival rate of only 13%. Most patients present with advanced disease with unpredictable ...
34519480
Antioxidative and Angiogenic Hyaluronic Acid-Based Hydrogel for the Treatment of Peripheral Artery Disease.
Peripheral arterial disease (PAD) is a progressive atherosclerotic disorder characterized by blockages of the arteries supplying the lower extremities. Ischemia initiates oxidative damage and mitochondrial dysfunction in the legs of PAD patients, causing injury to the tissues of the leg, significant decline in walking ...
[ [ "26282581", "GABAB receptor-mediated feed-forward circuit dysfunction in the mouse model of fragile X syndrome.", "Cortico-hippocampal feed-forward circuits formed by the temporoammonic (TA) pathway exhibit a marked increase in excitation/inhibition ratio and abnormal spike modulation functions in Fmr...
[ [ "33430634", "Stroke Imaging Selection Modality and Endovascular Therapy Outcomes in the Early and Extended Time Windows.", "Advanced imaging has been increasingly used for patient selection in endovascular stroke therapy. The impact of imaging selection modality on endovascular stroke therapy clinical...
29340183
Action observation training to improve motor function recovery: a systematic review.
Following the discovery of Mirror Neuron System (MNS), Action Observation Training (AOT) has become an emerging rehabilitation tool to improve motor functions both in neurologic and orthopedic pathologies. The aim of this study is to present the state of the art on the use of AOT in experimental studies to improve moto...
[ [ "29361441", "Neurophysiologic effects of transcutaneous auricular vagus nerve stimulation (taVNS) via electrical stimulation of the tragus: A concurrent taVNS/fMRI study and review.", "Electrical stimulation of the auricular branch of the vagus nerve (ABVN) via transcutaneous auricular vagus nerve sti...
[ [ "26033541", "Mitochondrial E3 ligase March5 maintains stemness of mouse ES cells via suppression of ERK signalling.", "Embryonic stem cells (ESCs) possess pluripotency, which is the capacity of cells to differentiate into all lineages of the mature organism. Increasing evidence suggests that the pluri...
39560584
Mitochondrial related Mendelian randomization identifies causal associations between metabolic disorders and childhood neurodevelopmental disorders.
Childhood neurodevelopmental disorders (NDDs), including autism spectrum disorder (ASD), attention-deficit hyperactivity disorder, and Tourette syndrome, are a predominant cause of health-related disabilities in children and adolescents. Nevertheless, disease biomarkers are still limited. The aim of this study was to e...
[ [ "36447010", "Mispatterning and interneuron deficit in Tourette Syndrome basal ganglia organoids.", "Tourette Syndrome (TS) is a neuropsychiatric disorder thought to involve a reduction of basal ganglia (BG) interneurons and malfunctioning of the BG circuitry. However, whether interneurons fail to deve...
[ [ "37882378", "The efficacy of oral corticoids in treating complex regional pain syndrome: A retrospective cohort study.", "There is growing evidence supporting the role of inflammatory mechanisms in complex regional pain syndrome (CRPS). Corticoids, as most effective anti-inflammatory drugs, are widely...
39999454
Comorbid Guillain-Barré Syndrome and Tuberculosis: A Case Study and Global Perspective.
A 27-year-old man presented with a cough and progressive limb weakness. Initially diagnosed with pulmonary tuberculosis, he showed improvement in his cough after antituberculosis treatment (ATT). However, he subsequently developed worsening weakness and numbness in his lower limbs, leading to mobility loss and difficul...
[ [ "30310069", "Immune-mediated neuropathies.", "Since the discovery of an acute monophasic paralysis, later coined Guillain-Barr&#xe9; syndrome, almost 100 years ago, and the discovery of chronic, steroid-responsive polyneuropathy 50 years ago, the spectrum of immune-mediated polyneuropathies has broade...
[ [ "40436348", "Gene therapy and nanomedicine for meningioma treatment.", "Meningioma, a prevalent central nervous system (CNS) tumor, exhibits a broad spectrum of clinical behavior, ranging from benign to aggressive. Although surgical resection remains a viable treatment option for most cases, higher-gr...
30401642
Denervated mouse dentate granule cells adjust their excitatory but not inhibitory synapses following in vitro entorhinal cortex lesion.
Neurons adjust their synaptic strength in a homeostatic manner following changes in network activity and connectivity. While this form of plasticity has been studied in detail for excitatory synapses, homeostatic plasticity of inhibitory synapses remains not well-understood. In the present study, we employed entorhinal...
[ [ "11031127", "The genomic action potential.", "Neurons compute in part by integrating, on a time scale of milliseconds, many synaptic inputs and generating a digital output-the \"action potential\" of classic electrophysiology. Recent discoveries indicate that neurons also perform a second, much slower...
[ [ "30312809", "Depth-dependent intracortical myelin organization in the living human brain determined by in vivo ultra-high field magnetic resonance imaging.", "Intracortical myelin is a key determinant of neuronal synchrony and plasticity that underpin optimal brain function. Magnetic resonance imaging...
37257216
Prednisolone 20 mg vs 40 mg in complex regional pain syndrome type I: A randomized controlled trial.
High dose of corticosteroid has been found beneficial in complex regional pain syndrome type I (CRPS-I). We report the efficacy and safety of prednisolone 20&#xa0;mg versus 40&#xa0;mg in CRPS-I in an open label randomized controlled trial.</AbstractText The patients with CRPS-I of the shoulder joint with a CRPS score o...
[ [ "40149508", "Cannabinoids in Chronic Pain Management: A Review of the History, Efficacy, Applications, and Risks.", "<b" ], [ "40280127", "The gut microbiota promotes pain in fibromyalgia.", "Fibromyalgia is a prevalent syndrome characterized by widespread pain in the absence of eviden...
[ [ "36347341", "The neural mechanism of non-phase-locked EEG activity in task switching.", "Flexible switching between different tasks is an important cognitive ability for humans and it is often studied using the task-switching paradigm. Although the neural mechanisms of task switching have been extensi...
40748959
Orexin effect on physiological pulsations of the human brain.
Sleep promotes cerebrospinal fluid (CSF) to interstitial fluid (ISF) exchange in the brain facilitated by brain pulsations. Especially brain vasomotion and arterial pulsations modulated by noradrenaline drive the intracranial fluid dynamics. Narcolepsy type 1 (NT1) entails lessened orexinergic output to wake-promoting ...
[ [ "40111737", "Narcolepsy: Beyond the Classic Pentad.", "Narcolepsy is a rare, disabling, chronic neurologic disorder that requires lifelong management of symptoms with pharmacologic and nonpharmacologic methods. The pentad symptoms of narcolepsy include excessive daytime sleepiness, cataplexy, disrupte...
[ [ "40455869", "Modelling fragile X-associated neuropsychiatric disorders in young inducible 90CGG premutation mice.", "Fragile X-associated tremor/ataxia syndrome (FXTAS) is a late-onset neurodegenerative disorder caused by a preCGG repeat expansion in the FMR1 gene. Individuals with the FMR1 premutatio...
40653907
Integrin β4-Enriched Small Extracellular Vesicle as Drug Delivery Vehicle for Targeting Pulmonary Metastasis of Hepatocellular Carcinoma.
Small extracellular vesicles (sEVs) hold significant promise for targeted drug delivery, owing to their unique ability to target and accumulate in specific tissues. The organotropism of sEVs is primarily determined by the presence of integrins on their surface. In this study, sEV with enriched integrin &#x3b2;4, design...
[ [ "32772213", "Splice variants of RAS-translational significance.", "One of the mechanisms potentially explaining the discrepancy between the number of human genes and the functional complexity of organisms is generating alternative splice variants, an attribute of the vast majority of multi-exon genes....
[ [ "40796324", "Exploring the Diagnostic Potential of Core Targets of 6PPD and Its Metabolite 6PPD-Q in Cardiovascular Diseases: An Integrated Analysis Based on Network Toxicology, Molecular Docking, and In Vitro Validation.", "6PPD (N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine) and its oxidized fo...
38447117
Disparities in Genetic Testing for Neurologic Disorders.
Genetic testing is now the standard of care for many neurologic conditions. Health care disparities are unfortunately widespread in the US health care system, but disparities in the utilization of genetic testing for neurologic conditions have not been studied. We tested the hypothesis that access to and results of gen...
[ [ "36685225", "A functional network of highly pure enteric neurons in a dish.", "The enteric nervous system (ENS) is the intrinsic nervous system that innervates the entire digestive tract and regulates major digestive functions. Recent evidence has shown that functions of the ENS critically rely on ent...
[ [ "39556800", "Middle fossa approach for a petrous apex bony spur causing trigeminal neuralgia: illustrative case.", "Trigeminal neuralgia (TN) can arise from trigeminal nerve compression at the root entry zone due to neurovascular conflict, which most often presents in the 6th decade of life. The autho...
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Check out the documentation for more information.

Jerjes/neuro-specter2-triplets-multi-pool

This dataset contains anchor papers with their top-K most similar (positive) and most dissimilar (negative) papers based on SPECTER2 embeddings.

Dataset Structure

Each row contains:

  • anchor_id: Unique identifier for the anchor paper
  • anchor_title: Title of the anchor paper
  • anchor_abstract: Abstract of the anchor paper
  • positive_pool: List of 5 most similar papers, each as [id, title, abstract]
  • negative_pool: List of 5 most dissimilar papers, each as [id, title, abstract]

Dataset Statistics

  • Total anchors: 100,000
  • Positives per anchor: 5
  • Negatives per anchor: 5
  • Embedding model: allenai/specter2_base

Usage

from datasets import load_dataset

dataset = load_dataset("Jerjes/neuro-specter2-triplets-multi-pool")

# Access a sample
sample = dataset["train"][0]
print(f"Anchor: {sample['anchor_title']}")
print(f"Top positive: {sample['positive_pool'][0][1]}")  # title of most similar paper
print(f"Top negative: {sample['negative_pool'][0][1]}")  # title of most dissimilar paper

Citation

If you use this dataset, please cite the original SPECTER2 paper:

@inproceedings{specter2,
    title={SPECTER2: Better Scientific Paper Representations Through Augmented Word Embeddings},
    author={Pradeep Dasigi and Kyle Lo and Iz Beltagy and Arman Cohan and Noah A. Smith and Matt Gardner},
    booktitle={Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing},
    year={2021}
}
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