bugged stringlengths 6 599k | fixed stringlengths 6 40.8M | __index_level_0__ int64 0 3.24M |
|---|---|---|
public RubyClass getNotImplementedError() { return notImplementedError; } | public RubyClass getNotImplementedError() { return notImplementedError; } | 3,237,478 |
public RubyClass getRangeError() { return rangeError; } | public RubyClass getRangeError() { return rangeError; } | 3,237,479 |
public RubyClass getRegexpError() { return regexpError; } | public RubyClass getRegexpError() { return regexpError; } | 3,237,480 |
public RubyClass getScriptError() { return scriptError; } | public RubyClass getScriptError() { return scriptError; } | 3,237,481 |
public RubyClass getSecurityError() { return securityError; } | public RubyClass getSecurityError() { return securityError; } | 3,237,482 |
public RubyClass getSignalException() { return signalException; } | public RubyClass getSignalException() { return signalException; } | 3,237,483 |
public RubyClass getStandardError() { return standardError; } | public RubyClass getStandardError() { return standardError; } | 3,237,484 |
public RubyClass getSyntaxError() { return syntaxError; } | public RubyClass getSyntaxError() { return syntaxError; } | 3,237,485 |
public RubyClass getSystemExit() { return systemExit; } | public RubyClass getSystemExit() { return systemExit; } | 3,237,486 |
public RubyClass getTypeError() { return typeError; } | public RubyClass getTypeError() { return typeError; } | 3,237,487 |
private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | 3,237,488 |
private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | 3,237,489 |
private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | private void retrieveNotes() { final PrivateNotes privateNotes = PrivateNotes.getPrivateNotes(); String text = privateNotes.getNotes(); final JLabel titleLabel = new JLabel("Notepad"); titleLabel.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, Color.LIGHT_GRAY)); titleLabel.... | 3,237,490 |
public void actionPerformed(ActionEvent actionEvent) { frame.dispose(); // Save it. String text = pane.getText(); privateNotes.setNotes(text); PrivateNotes.savePrivateNotes(privateNotes); } | public void actionPerformed(ActionEvent actionEvent) { frame.dispose(); // Save it. String text = pane.getText(); privateNotes.setNotes(text); PrivateNotes.savePrivateNotes(privateNotes); } | 3,237,491 |
public String toString(){ return "FormalInput"+(formalInputId==null ? ":Hash"+this.hashCode() : ":"+formalInputId); } | public String toString(){ return "FormalInput"+(formalInputId==null ? ":Hash_"+this.hashCode() : ":Id_"+formalInputId); } | 3,237,492 |
public void testBuildDate() throws Exception { assert (!WebMacro.VERSION.equals("@BUILD_DATE")); } | public void testBuildDate() throws Exception { assert (!WebMacro.BUILD_DATE.equals("@BUILD_DATE@")); } | 3,237,493 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,494 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,495 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,496 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,497 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,498 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,499 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,500 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,501 |
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.h... | 3,237,502 |
final public String getDOCUMENT_ROOT() { return requst_.getRealPath("/"); } | final public String getDOCUMENT_ROOT() { return requst_.getRealPath("/"); } | 3,237,503 |
protected void onSetUp() throws Exception { iQuery = (LocalQuery) applicationContext.getBean("queryService"); iUpdate = (LocalUpdate) applicationContext.getBean("updateService"); iAnalysis = (IAnalysis) applicationContext.getBean("analysisService"); iPojos = (IPojos) applicationContext.g... | protected void onSetUp() throws Exception { iQuery = (LocalQuery) applicationContext.getBean("queryService"); iUpdate = (LocalUpdate) applicationContext.getBean("updateService"); iAnalysis = (IAnalysis) applicationContext.getBean("analysisService"); iPojos = (IPojos) applicationContext.g... | 3,237,504 |
public void setUp() { runtime = Ruby.getDefaultInstance(); runtime.getLoadService().init(runtime, new ArrayList()); } | public void setUp() { runtime = Ruby.getDefaultInstance(); runtime.getLoadService().init(new ArrayList()); } | 3,237,505 |
public static IRubyObject print(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.print(defout.toRubyObject(), args); return recv.getRuntime().getNil(); } | public static IRubyObject print(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.print(defout, args); return recv.getRuntime().getNil(); } | 3,237,507 |
public static IRubyObject printf(IRubyObject recv, IRubyObject args[]) { if (args.length != 0) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); if (!(args[0] instanceof RubyString)) { defout = args[0]; IRubyObject[] newArgs = new IRubyObject[arg... | public static IRubyObject printf(IRubyObject recv, IRubyObject args[]) { if (args.length != 0) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); if (!(args[0] instanceof RubyString)) { defout = args[0]; IRubyObject[] newArgs = new IRubyObject[arg... | 3,237,508 |
public static IRubyObject puts(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.puts(defout.toRubyObject(), args); return recv.getRuntime().getNil(); } | public static IRubyObject puts(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.puts(defout, args); return recv.getRuntime().getNil(); } | 3,237,509 |
public Node appendToBlock(Node head, Node tail) { if (tail == null) { return head; } else if (head == null) { return tail; } if (!(head instanceof BlockNode)) { head = new BlockNode(head.getPosition()).add(head); } if (warnings.isVerbose() &... | public Node appendToBlock(Node head, Node tail) { if (tail == null) { return head; } else if (head == null) { return tail; } if (!(head instanceof BlockNode)) { head = new BlockNode(union(head, tail)).add(head); } if (warnings.isVerbose() &&... | 3,237,510 |
public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCal... | public Node new_fcall(String name, Node args, Token operation) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCallNode(iPos... | 3,237,511 |
public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCal... | public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(union(operation, args), name, ((BlockPassNode) args).getArgsNode())); return args; } return new ... | 3,237,512 |
public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCal... | public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCal... | 3,237,513 |
public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, ar... | public Node new_super(Node args, Token operation) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, args); } | 3,237,514 |
public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, ar... | public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(union(operation, args), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition... | 3,237,515 |
public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, ar... | public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(operation.get... | 3,237,516 |
public String getFolderLocation() { String articlePath = getArticlePath(); return ContentUtil.getParentPath(articlePath); } | public String getFolderLocation() { String articlePath = getArticlePath(); return ContentUtil.getParentPath(articlePath); } | 3,237,517 |
public DatasetLoader(HiViewer viewer, Set datasetsID) { super(viewer); this.datasetsID = datasetsID; } | public DatasetLoader(HiViewer viewer, Set datasetsID, boolean refresh) { super(viewer); this.datasetsID = datasetsID; } | 3,237,518 |
public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; viewer.setHierarchyRoots((Set) result, false); } | public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; viewer.setHierarchyRoots((Set) result, false, refresh); } | 3,237,520 |
public ContactList() { // Load Local Preferences localPreferences = SettingsManager.getLocalPreferences(); offlineGroup = new ContactGroup("Offline Group"); JToolBar toolbar = new JToolBar(); toolbar.setFloatable(false); addContactMenu = new JMenuItem(Res.getString("menuite... | public ContactList() { // Load Local Preferences localPreferences = SettingsManager.getLocalPreferences(); offlineGroup = new ContactGroup("Offline Group"); JToolBar toolbar = new JToolBar(); toolbar.setFloatable(false); addContactMenu = new JMenuItem(Res.getString("menuite... | 3,237,521 |
public void actionPerformed(ActionEvent evt) { // searchContacts(""); } | public void actionPerformed(ActionEvent evt) { // searchContacts(""); } | 3,237,522 |
private void updateUserPresence(Presence presence) { if (presence == null) { return; } Roster roster = SparkManager.getConnection().getRoster(); final String bareJID = StringUtils.parseBareAddress(presence.getFrom()); RosterEntry entry = roster.getEntry(bareJID); ... | private void updateUserPresence(Presence presence) { if (presence == null) { return; } Roster roster = SparkManager.getConnection().getRoster(); final String bareJID = StringUtils.parseBareAddress(presence.getFrom()); RosterEntry entry = roster.getEntry(bareJID); ... | 3,237,523 |
public static void main(String args[]) { //@START int i, j, k, n = Integer.parseInt(args[0]); int x[] = new int[n]; int y[] = new int[n]; for (i = 0; i < n; i++) x[i] = i + 1; for (k = 0; k < 1000; k++ ) for (j = n-1; j >= 0; j--) y[j] += x[j]; System.out.println(y[0] + " " + y[n-1]); //@END } | public static void main(String args[]) { //@START int i, j, k, n = Integer.parseInt(args[0]); int x[] = new int[n]; int y[] = new int[n]; for (i = 0; i < n; i++) x[i] = i + 1; for (k = 0; k < 1000; k++ ) for (j = n-1; j >= 0; j--) y[j] += x[j]; System.out.println(y[0] + " " + y[n-1]); //@END } | 3,237,524 |
public void selfConfigure() { this.ctx = OmeroContext.getInternalServerContext(); this.ctx.applyBeanPropertyValues(this,getName()); } | public void selfConfigure() { this.ctx = OmeroContext.getInternalServerContext(); this.ctx.applyBeanPropertyValues(this,getServiceInterface()); } | 3,237,525 |
public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | 3,237,526 |
public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | 3,237,527 |
public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition pos... | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition pos... | 3,237,529 |
public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition pos... | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition pos... | 3,237,530 |
public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVi... | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVi... | 3,237,531 |
public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVi... | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVi... | 3,237,532 |
protected void loadBeanDefinitions(DefaultListableBeanFactory beanFactory) throws IOException { // Create a new XmlBeanDefinitionReader for the given BeanFactory. XmlBeanDefinitionReader beanDefinitionReader = createBeanDefinitionReader(beanFactory); // Configure the bean definition reader with... | protected void loadBeanDefinitions(DefaultListableBeanFactory beanFactory) throws IOException { // Create a new XmlBeanDefinitionReader for the given BeanFactory. XmlBeanDefinitionReader beanDefinitionReader = XBeanHelper.createBeanDefinitionReader(this, beanFactory, xmlPreprocessors); // Confi... | 3,237,533 |
protected void setUp() { pixels = new Pixels(); pixels.setSizeX(512); pixels.setSizeY(512); pixels.setSizeZ(64); pixels.setSizeC(3); pixels.setSizeT(50); PixelsType type = new PixelsType(); pixels.setPixelsType(type); // FIXME pixelBu... | protected void setUp() { pixels = new Pixels(); pixels.setSizeX(512); pixels.setSizeY(512); pixels.setSizeZ(64); pixels.setSizeC(3); pixels.setSizeT(50); PixelsType type = new PixelsType(); pixels.setPixelsType(type); // FIXME PixelsS... | 3,237,534 |
public void testGetInitialPlaneOffset() { assertEquals(pixelBuffer.getPlaneOffset(0, 0, 0).longValue(), 0L); } | public void testGetInitialPlaneOffset() throws DimensionsOutOfBoundsException { assertEquals(pixelBuffer.getPlaneOffset(0, 0, 0).longValue(), 0L); } | 3,237,535 |
public void testGetPlaneOffset1() { long offset = ((long)timepointSize * 25) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 0, 25).longValue(), offset); } | public void testGetPlaneOffset1() throws DimensionsOutOfBoundsException { long offset = ((long)timepointSize * 25) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 0, 25).longValue(), offset); } | 3,237,536 |
public void testGetPlaneOffset2() { long offset = ((long)timepointSize * 25) + ((long)stackSize * 1) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 1, 25).longValue(), offset); } | public void testGetPlaneOffset2() throws DimensionsOutOfBoundsException { long offset = ((long)timepointSize * 25) + ((long)stackSize * 1) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 1, 25).longValue(), offset); } | 3,237,537 |
public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = Double.POSITIVE_INFINITY; for(int i=0;i<values.length;i++) { ... | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = HeatMapUtils.extractValues(attributes,elementName); double currentVal = Double.POSITIVE_INFINITY; for(int i=0;i<values.length;i++) ... | 3,237,538 |
public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = 0; for(int i=0;i<values.length;i++) { currentVal += v... | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = HeatMapUtils.extractValues(attributes,elementName); double currentVal = 0; for(int i=0;i<values.length;i++) { cu... | 3,237,539 |
public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); Arrays.sort(values); if(values.length % 2 != 0) { return valu... | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = HeatMapUtils.extractValues(attributes,elementName); Arrays.sort(values); if(values.length % 2 != 0) { ... | 3,237,540 |
public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = Double.NEGATIVE_INFINITY; for(int i=0;i<values.length;i++) { ... | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = HeatMapUtils.extractValues(attributes,elementName); double currentVal = Double.NEGATIVE_INFINITY; for(int i=0;i<values.length;i++) ... | 3,237,541 |
public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = 0; ArticleItemBean[] articleItemBean; try { articleItemBean = (ArticleItemBean[])loadAllArticlesInFolder(ContentUtil.ARTICLE_PATH).toArray(new ArticleItemBean[0]); avail... | public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = 0; ArticleItemBean[] articleItemBean; try { articleItemBean = (ArticleItemBean[])loadAllArticlesInFolder(ContentUtil.ARTICLE_PATH).toArray(new ArticleItemBean[0]); avail... | 3,237,542 |
public void actionPerformed(ActionEvent e) { String s = e.getActionCommand(); int index = Integer.parseInt(s); try { switch (index) { case FAMILY: JComboBox cbx = (JComboBox) e.getSource(); setFamily(cbx.getSelectedIndex()); break; case WAVELENGTH: JComboBox cbx1 = (JComboBox) e.getSource()... | public void actionPerformed(ActionEvent e) { String s = e.getActionCommand(); int index = Integer.parseInt(s); try { switch (index) { case FAMILY: JComboBox cbx = (JComboBox) e.getSource(); setFamily(cbx.getSelectedIndex()); break; case WAVELENGTH: JComboBox cbx1 = (JComboBox) e.getSource()... | 3,237,543 |
private void popUpHistogram() { if (histogramDialog == null) { int w, start, end, min, max; w = view.getWavelengths().getSelectedIndex(); start = control.getChannelWindowStart(w); end = control.getChannelWindowEnd(w); min = control.getGlobalChannelWindowStart(w); max = control.getGlobalChannelWindowEnd(w... | private void popUpHistogram() { if (histogramDialog == null) { int w, start, end, min, max; w = view.getWavelengths().getSelectedIndex(); start = control.getChannelWindowStart(w); end = control.getChannelWindowEnd(w); min = control.getGlobalChannelWindowStart(w); max = control.getGlobalChannelWindowEnd(w... | 3,237,544 |
private void resetDefaultBitResolution() { JSlider slider = view.getBitResolution(); //Remove temporarily the listener otherwise an event is fired. slider.removeChangeListener(this); slider.setValue(DomainPane.DEPTH_END); slider.addChangeListener(this); } | private void resetDefaultBitResolution() { JSlider slider = view.getBitResolution(); //Remove temporarily the listener otherwise an event is fired. slider.removeChangeListener(this); slider.setValue(DomainPane.DEPTH_END); slider.addChangeListener(this); } | 3,237,545 |
private void setBitResolution(int v) { int k = view.getGamma().getValue(); //gamma int family = view.getTransformations().getSelectedIndex(); //family //bitResolution int br = ((Integer) resolutions.get(new Integer(v))).intValue(); control.setQuantumStrategy(k/10, family, br, BR); } | private void setBitResolution(int v) { int k = view.getGamma().getValue(); //gamma int family = view.getTransformations().getSelectedIndex(); //family //bitResolution int br = ((Integer) resolutions.get(new Integer(v))).intValue(); control.setQuantumStrategy(k/10, family, br, BR); } | 3,237,546 |
private void setCurveCoefficient(int value) { double k = (double) value/10; view.getGammaLabel().setText(" Gamma: "+k); int family = view.getTransformations().getSelectedIndex(); //family int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new Integer(b))).intValue(); ... | private void setCurveCoefficient(int value) { double k = (double) value/10; view.getGammaLabel().setText(" Gamma: "+k); int family = view.getTransformations().getSelectedIndex(); //family int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new Integer(b))).intValue(); ... | 3,237,547 |
private void setFamily(int family) { if (family == QuantumFactory.LOGARITHMIC || family == QuantumFactory.LINEAR) view.getGamma().setEnabled(false); else view.getGamma().setEnabled(true); resetDefaultGamma(); int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new I... | private void setFamily(int family) { if (family == QuantumFactory.LOGARITHMIC || family == QuantumFactory.LINEAR) view.getGamma().setEnabled(false); else view.getGamma().setEnabled(true); resetDefaultGamma(); int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new I... | 3,237,548 |
private void setWavelength(int w) { disposeDialogs(); control.setWavelength(w); } | private void setWavelength(int w) { disposeDialogs(); control.setWavelength(w); } | 3,237,549 |
public void stateChanged(ChangeEvent e) { JSlider source = (JSlider) e.getSource(); if (source == view.getGamma()) setCurveCoefficient(source.getValue()); else setBitResolution(source.getValue()); } | public void stateChanged(ChangeEvent e) { JSlider source = (JSlider) e.getSource(); if (source == view.getGamma()) setCurveCoefficient(source.getValue()); else setBitResolution(source.getValue()); } | 3,237,550 |
void setInputWindowEnd(int v) { int gv = convertRealIntoGraphics(v); setInputEndBox(gv); view.getHistogramPanel().updateInputEnd(gv, v); } | void setInputWindowEnd(int v) { int gv = convertRealIntoGraphics(v); setInputEndBox(gv); view.getHistogramPanel().updateInputEnd(gv, v); } | 3,237,551 |
void setInputWindowStart(int v) { int gv = convertRealIntoGraphics(v); setInputStartBox(gv); view.getHistogramPanel().updateInputStart(gv, v); } | void setInputWindowStart(int v) { int gv = convertRealIntoGraphics(v); setInputStartBox(gv); view.getHistogramPanel().updateInputStart(gv, v); } | 3,237,552 |
public static final boolean isIdentChar(char ch) { return Character.isLetterOrDigit(ch) || ch == '_'; } | public static final boolean isIdentChar(char ch) { return Character.isLetterOrDigit(ch) || ch == '_'; } | 3,237,553 |
public IRubyObject get() { IRubyObject errorInfo = runtime.getGlobalVariables().get("$!"); return errorInfo.isNil() ? runtime.getNil() : errorInfo.callMethod(errorInfo.getRuntime().getCurrentContext(), "backtrace"); } | public IRubyObject get() { IRubyObject errorInfo = runtime.getGlobalVariables().get("$!"); IRubyObject backtrace = errorInfo.isNil() ? runtime.getNil() : errorInfo.callMethod(errorInfo.getRuntime().getCurrentContext(), "backtrace"); if (!(backtrace instanceof RubyArray)) { backtrace = run... | 3,237,554 |
private NSImage getImage(String image) { InputStream in = this.getClass().getResourceAsStream(image); ByteArrayOutputStream out = new ByteArrayOutputStream(); byte[] buff = new byte[10 * 1024]; int len; try { while ((len = in.read(buff)) != -1) { out.writ... | private NSImage getImage(String image) { InputStream in = this.getClass().getResourceAsStream(image); ByteArrayOutputStream out = new ByteArrayOutputStream(); byte[] buff = new byte[10 * 1024]; int len; try { while ((len = in.read(buff)) != -1) { out.writ... | 3,237,555 |
public boolean category(Category c) { List<CategoryImageLink> images = c.collectFromImageLinks( null ); List<CategoryGroupCategoryLink> cgs = c.collectFromCategoryGroupLinks( null ); // TODO return false; // TODO images.contains(i); } | public boolean category(Category c) { List<CategoryImageLink> images = c.collectFromImageLinks( null ); List<CategoryGroupCategoryLink> cgs = c.collectFromCategoryGroupLinks( null ); // TODO return false; // TODO images.contains(i); } | 3,237,556 |
public void run() { target.addChild(node); awaitingDisplay = false; displayingNode = true; displayedNode = node; target.repaint(); // TODO fix this hack if(displayedNode instan... | public void run() { target.addChild(node); awaitingDisplay = false; displayingNode = true; displayedNode = node; target.repaint(); // TODO fix this hack if(displayedNode instan... | 3,237,557 |
private UIComponent getSearchPanel() { String ref = SEARCH_ARTICLE_BEAN_ID + "."; WFContainer mainContainer = new WFContainer(); WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(SEARCH_PUBLISHED_FROM_ID); em.addErrorMessage(SEARCH_PUBLISHED_TO_ID); mainContainer.add(em); HtmlPanelGrid p = WFPane... | private UIComponent getSearchPanel() { String ref = SEARCH_ARTICLE_BEAN_ID + "."; WFContainer mainContainer = new WFContainer(); WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(SEARCH_PUBLISHED_FROM_ID); em.addErrorMessage(SEARCH_PUBLISHED_TO_ID); mainContainer.add(em); HtmlPanelGrid p = WFPane... | 3,237,558 |
public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: " + groupId); } int count = g.sizeOfGroupExperimenterMap(); if (count < 1) { return new Experimenter[... | public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: " + groupId); } int count = g.sizeOfGroupExperimenterMap(); if (count < 1) { return new Experimenter[... | 3,237,559 |
public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute(new UserQ(new Parameters() .addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: " + experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if (count < 1) { return new E... | public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute(new UserQ(new Parameters() .addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: " + experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if (count < 1) { return new E... | 3,237,560 |
public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | 3,237,561 |
public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | 3,237,562 |
public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverage... | 3,237,563 |
protected Object parseCustomMapElement(MappingMetaData metadata, Element element, String name) { Map map = new HashMap(); Element parent = (Element) element.getParentNode(); String entryName = metadata.getMapEntryName(getLocalName(parent), name); String keyName = metadata.getMapKeyName(g... | protected Object parseCustomMapElement(MappingMetaData metadata, Element element, String name) { Map map = new HashMap(); Element parent = (Element) element.getParentNode(); String entryName = metadata.getMapEntryName(getLocalName(parent), name); String keyName = metadata.getMapKeyName(g... | 3,237,564 |
public BaseQ(Parameters params) { super(defs,new Parameters( new Filter().unique() ).addAll( params )); } | public BaseQ(Parameters params) { super(defs,new Parameters( new Filter().unique() ).addAll( params )); } | 3,237,565 |
public GroupQ(Parameters params) { super(params); } | public GroupQ(Parameters params) { super(params); } | 3,237,566 |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (... | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (... | 3,237,567 |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (... | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (... | 3,237,568 |
public UserQ(Parameters params) { super(params); } | public UserQ(Parameters params) { super(params); } | 3,237,569 |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Experimenter.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria g = m.createCriteria("parent",Query.LEFT_JOIN); if (valu... | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Experimenter.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria g = m.createCriteria("parent",Query.LEFT_JOIN); if (valu... | 3,237,570 |
public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = ... | public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = ... | 3,237,571 |
public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = ... | public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = ... | 3,237,572 |
public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } | public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } | 3,237,573 |
public void changeGroup(IObject iObject, String groupName) { final LocalUpdate update = iUpdate; // should take a group final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = groupProxy(groupName); copy.getDetails().setGroup(group); getSecuritySyst... | public void changeGroup(IObject iObject, String groupName) { final LocalUpdate update = iUpdate; // should take a group final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = groupProxy(groupName); copy.getDetails().setGroup(group); getSecuritySyst... | 3,237,574 |
public IObject updateObject(IObject obj) { update.flush(); return null; } | public IObject updateObject(IObject obj) { update.flush(); return null; } | 3,237,575 |
public void changeOwner(IObject iObject, String omeName) { // should take an Owner IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = userProxy(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); } | public void changeOwner(IObject iObject, String omeName) { // should take an Owner IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = userProxy(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); } | 3,237,576 |
public void changePassword(String newPassword) { internalChangeUserPasswordById( getSecuritySystem().currentUserId(), newPassword); } | public void changePassword(String newPassword) { internalChangeUserPasswordById( getSecuritySystem().currentUserId(), newPassword); } | 3,237,577 |
public void changePermissions(final IObject iObject, final Permissions perms) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); copy.getDetails().setPermissions(perms); getSecuritySystem().doAction(copy, new SecureAction(){ public <T ... | public void changePermissions(final IObject iObject, final Permissions perms) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); copy.getDetails().setPermissions(perms); getSecuritySystem().doAction(copy, new SecureAction(){ public <T ... | 3,237,578 |
public void changeUserPassword(String omeName, String newPassword) { Experimenter e = lookupExperimenter(omeName); internalChangeUserPasswordById(e.getId(),newPassword); } | public void changeUserPassword(String omeName, String newPassword) { Experimenter e = lookupExperimenter(omeName); internalChangeUserPasswordById(e.getId(),newPassword); } | 3,237,579 |
public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: "+groupId); } int count = g.sizeOfGroupExperimenterMap(); if... | public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: "+groupId); } int count = g.sizeOfGroupExperimenterMap(); if... | 3,237,580 |
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