JoaoJunior/formatted-java-preprocessed-code-APR

private Filter getFilter(String serviceInterface, String serviceFilter) { StringBuffer sb = new StringBuffer(); boolean andFilterWithInterfaceName = serviceFilter != null; if (andFilterWithInterfaceName) { sb.append("(&"); } if (serviceFilter != null) { sb.append(serviceFilter); } sb.append("("); sb.append...

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private Filter getFilter(String serviceInterface, String serviceFilter) { StringBuffer sb = new StringBuffer(); boolean andFilterWithInterfaceName = serviceFilter != null; if (andFilterWithInterfaceName) { sb.append("(&"); } if (serviceFilter != null) { sb.append(serviceFilter); } sb.append("("); sb.append...

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public AbstractFileName(final String scheme, final String absPath, FileType type) { this.rootUri = null; this.scheme = scheme; this.type = type; if (absPath != null && absPath.length() > 0) { if (absPath.endsWith("/")) { ...

public AbstractFileName(final String scheme, final String absPath, FileType type) { this.rootUri = null; this.scheme = scheme; this.type = type; if (absPath != null && absPath.length() > 0) { if (absPath.length() > 1 && absPath.endsWith("/"...

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private synchronized void build() { // check accel if (accel != null) return; int n = primitives.getNumPrimitives(); if (n >= 10) UI.printInfo("[GEO] Building acceleration structure for %d primitives ...", n); if (n > 20000000) accel = new UniformG...

private synchronized void build() { // check accel if (builtAccel) return; int n = primitives.getNumPrimitives(); if (n >= 10) UI.printInfo("[GEO] Building acceleration structure for %d primitives ...", n); if (n > 20000000) accel = new UniformGrid...

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void intersect(Ray r, IntersectionState state) { if (accel == null) build(); accel.intersect(r, state); }

void intersect(Ray r, IntersectionState state) { if (!builtAccel) build(); accel.intersect(r, state); }

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protected String[] getBundleLocations() { return new String[]{ localMavenArtifact("org.springframework.osgi", "aopalliance.osgi", "1.0-SNAPSHOT"), localMavenArtifact("org.springframework.osgi", "commons-collections.osgi", "3.2-SNAPSHOT"), localMavenArtifact("org.s...

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public void test() throws ScriptsExecutorException { final ScriptsExecutor se = newScriptsExecutor("PropertiesTest.xml"); se.execute(); assertEquals("jdbc:hsqldb:mem:propertiestest", params.getUrl()); assertEquals("sa", params.getUser()); assertEquals("", params.getPassword()); ...

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protected void doAttach() throws Exception { final GenericFileName name = (GenericFileName) getName(); url = new HttpURL(name.getUserName(), name.getPassword(), name.getHostName(), name.getPort(), name.getPath()); resource = new WebdavResource(fileSystem.getClient()) { }; ...

protected void doAttach() throws Exception { final GenericFileName name = (GenericFileName) getName(); url = new HttpURL(name.getUserName(), name.getPassword(), name.getHostName(), name.getPort(), name.getPath()); resource = new WebdavResource(fileSystem.getClient()) { final Op...

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public Bundle getBundle() throws Exception { Assert.notNull(bundleUrl, "BundleUrl is required"); Assert.notNull(bundleContext, "BundleContext is required"); if (bundle == null) { bundle = bundleContext.installBundle(bundleUrl.getURL().toString()); classloader = new BundleDelegatingClassLoader(bundle); bundleC...

public Bundle getBundle() throws Exception { Assert.notNull(bundleUrl, "location is required"); Assert.notNull(bundleContext, "BundleContext is required"); if (bundle == null) { bundle = bundleContext.installBundle(bundleUrl.getURL().toString()); classloader = new BundleDelegatingClassLoader(bundle); bundleCo...

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public String getNameInNamespace() { return ""; }

public String getNameInNamespace() { return "dc=scriptella"; }

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public void testModifyAdd() throws NamingException { final Entry e = readEntry( "dn: cn=ldap,dc=scriptella\n" + "cn: ldap\n" + "objectClass: top\n" + "objectClass: driver\n" + "envVars:"); ...

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public void testModifyAdd() throws NamingException { final Entry e = readEntry( "dn: cn=ldap,dc=scriptella\n" + "cn: ldap\n" + "objectClass: top\n" + "objectClass: driver\n" + "envVars:"); ...

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public DirContext createSubcontext(Name name, Attributes attrs) throws InvalidNameException { assertEquals(newName("cn=ldap"), name); BasicAttributes exp = new BasicAttributes(true); //TODO check why to lowercase attribute names exp.put("cn", "ldap...

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public DirContext createSubcontext(Name name, Attributes attrs) throws InvalidNameException { assertEquals(newName("cn=ldap"), name); BasicAttributes exp = new BasicAttributes(true); //TODO check why to lowercase attribute names exp.put("cn", "ldap...

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private void createInterceptor() { this.interceptor = new OsgiServiceInterceptor( this.tgtSource, SI.class ); }

private void createInterceptor() { this.interceptor = new OsgiServiceInterceptor( this.tgtSource, SI.class, new Object() ); }

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private FileInfo buildExpectedStructure() { // Build the expected structure final FileInfo base = new FileInfo( getReadFolder().getName().getBaseName(), FileType.FOLDER ); base.addChild( "file1.txt", FileType.FILE ); base.addChild( "empty.txt", FileType.FILE ); base.addChild( "...

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private void attach() throws FileSystemException { if (attached) { return; } try { // Attach and determine the file type doAttach(); attached = true; type = doGetType(); if (type == null) { ...

private void attach() throws FileSystemException { if (attached) { return; } try { // Attach and determine the file type doAttach(); attached = true; if (type == null) { type = FileType...

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private void attach() throws FileSystemException { if (attached) { return; } try { // Attach and determine the file type doAttach(); attached = true; type = doGetType(); if (type == null) { ...

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private void attach() throws FileSystemException { if (attached) { return; } try { // Attach and determine the file type doAttach(); attached = true; type = doGetType(); if (type == null) { ...

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public FileObject[] getChildren() throws FileSystemException { attach(); if (!type.hasChildren()) { throw new FileSystemException("vfs.provider/list-children-not-folder.error", name); } // Use cached info, if present if (children != null) { r...

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protected void addCapabilities( final Collection caps ) { caps.add( Capability.CREATE ); caps.add( Capability.DELETE ); caps.add( Capability.GET_TYPE ); caps.add( Capability.LIST_CHILDREN ); caps.add( Capability.READ_CONTENT ); caps.add( Capability.LAST_MODIFIED ); ...

protected void addCapabilities( final Collection caps ) { caps.add( Capability.CREATE ); caps.add( Capability.DELETE ); caps.add( Capability.GET_TYPE ); caps.add( Capability.LIST_CHILDREN ); caps.add( Capability.READ_CONTENT ); caps.add( Capability.SET_LAST_MODIFIED ); c...

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public ParsedUri parseSmbUri( final String uriStr ) throws FileSystemException { final ParsedSmbUri uri = new ParsedSmbUri(); final StringBuffer name = new StringBuffer(); // Extract the scheme and authority parts extractToPath( uriStr, name, uri ); // Convert the hostna...

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private static AbstractApplicationContext getAgilefantSpringContext() { if(agilefantContext == null) { // get the static logger Log log = LogFactory.getLog(ExplicitSpringSupport.class); // inform that we're initializing spring log.info("initializing spring"); // create the context agilefantContex...

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protected void doRename(FileObject newfile) throws Exception { if (!file.renameTo(((LocalFile) newfile).getLocalFile())) { throw new FileSystemException("vfs.provider.local/rename-file.error", new String[]{file.toString(), newfile.toString()}); } }

protected void doRename(final FileObject newfile) throws Exception { if (!file.renameTo(((LocalFile) newfile).getLocalFile())) { throw new FileSystemException("vfs.provider.local/rename-file.error", new String[]{file.toString(), newfile.toString()}); } }

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protected void doRename(FileObject newfile) throws Exception { if (!file.renameTo(((LocalFile) newfile).getLocalFile())) { throw new FileSystemException("vfs.provider.local/rename-file.error", new String[]{file.toString(), newfile.toString()}); } }

protected void doRename(FileObject newfile) throws Exception { LocalFile newLocalFile = (LocalFile) FileObjectUtils.getAbstractFileObject(newfile); if (!file.renameTo(newLocalFile.getLocalFile())) { throw new FileSystemException("vfs.provider.local/rename-file.error", new...

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private void removeNounConceptPath(Set<List<Concept>> pathSet) { Set<List<Concept>> removeSet = new HashSet<List<Concept>>(); for (List<Concept> path : pathSet) { Concept c = path.get(1); if (!(c.getId().equals("30f801") || c.getId().equals("30f83e"))) { removeSet....

private void removeNounConceptPath(Set<List<Concept>> pathSet) { Set<List<Concept>> removeSet = new HashSet<List<Concept>>(); for (List<Concept> path : pathSet) { Concept c = path.get(2); if (!(c.getId().equals("30f801") || c.getId().equals("30f83e"))) { removeSet....

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public GenbankProcessor(SequenceBuilder theDelegate) { super(theDelegate); features = new FeatureTableParser(this, "GenBank"); }

public GenbankProcessor(SequenceBuilder theDelegate, String theSource) { super(theDelegate); features = new FeatureTableParser(this, "GenBank"); }

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public GenbankProcessor(SequenceBuilder theDelegate) { super(theDelegate); features = new FeatureTableParser(this, "GenBank"); }

public GenbankProcessor(SequenceBuilder theDelegate) { super(theDelegate); features = new FeatureTableParser(this, theSource); }

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public FileSystemException( final String message ) { this( message, null ); }

public FileSystemException( final String code ) { this( message, null ); }

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public FileSystemException( final String message ) { this( message, null ); }

public FileSystemException( final String message ) { this( code, null , null); }

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protected String[] doListChildren() throws Exception { if ( children == null ) { // List the children of this file children = ftpFs.getClient().listFiles( getName().getPath() ); if ( children == null ) { children = EMPTY_FTP_FILE_ARR...

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protected String[] doListChildren() throws Exception { if ( children == null ) { // List the children of this file children = ftpFs.getClient().listFiles( getName().getPath() ); if ( children == null ) { children = EMPTY_FTP_FILE_ARR...

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protected String[] doListChildren() throws Exception { if ( children == null ) { // List the children of this file children = ftpFs.getClient().listFiles( getName().getPath() ); if ( children == null ) { children = EMPTY_FTP_FILE_ARR...

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public final void accel(String accel) { if (accel.equals("uniformgrid")) accel(new UniformGrid()); else if (accel.equals("null")) accel(new NullAccelerator()); else if (accel.equals("bvh")) accel(new BoundingVolumeHierarchy()); else if (accel.equals("kdtr...

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public final void accel(String accel) { if (accel.equals("uniformgrid")) accel(new UniformGrid()); else if (accel.equals("null")) accel(new NullAccelerator()); else if (accel.equals("bvh")) accel(new BoundingVolumeHierarchy()); else if (accel.equals("kdtr...

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public static SunflowAPI create(String filename) { if (filename == null) return new SunflowAPI(); SunflowAPI api = null; if (filename.endsWith(".java")) { Timer t = new Timer(); UI.printInfo("[API] Compiling \"" + filename + "\" ..."); t.start(); ...

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public final void mesh(Mesh mesh) { if (mesh instanceof MeshLight) mesh.init(this); else { Geometry geo = new Geometry(mesh); Instance instance = new Instance(mesh.getShaders(), null, geo); primitive(instance); } }

public final void mesh(Mesh mesh) { if (mesh instanceof MeshLight) mesh.init(this); else { Geometry geo = new Geometry(mesh); Instance instance = new Instance(mesh.getShaders(), null, geo); instance(instance); } }

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public final void sphere(float x, float y, float z, float radius) { Sphere sphere = new Sphere(); Geometry geo = new Geometry(sphere); Matrix4 transform = Matrix4.translation(x, y, z).multiply(Matrix4.scale(radius)); primitive(new Instance(new Shader[] { currentShader }, transform, geo))...

public final void sphere(float x, float y, float z, float radius) { Sphere sphere = new Sphere(); Geometry geo = new Geometry(sphere); Matrix4 transform = Matrix4.translation(x, y, z).multiply(Matrix4.scale(radius)); instance(new Instance(new Shader[] { currentShader }, transform, geo));...

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public TreeModel getDefaultConceptTreeModel(Set pathSet) { return treeMaker.getDefaultConceptTreeModel(pathSet, project); }

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public FileObject createFileSystem( final String scheme, final FileObject file ) throws FileSystemException { FileProvider provider = (FileProvider)providers.get( scheme ); if ( provider == null ) { final String message = ...

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private LocalFileProvider getLocalFileProvider() throws FileSystemException { if ( localFileProvider == null ) { final String message = REZ.getString( "no-local-file-provider.error" ); throw new FileSystemException( message ); } return local...

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public FileReplicator getReplicator() throws FileSystemException { if ( fileReplicator == null ) { final String message = REZ.getString( "no-replicator.error" ); throw new FileSystemException( message ); } return fileReplicator; }

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public void createFolder() throws FileSystemException { synchronized (fs) { if (getType() == FileType.FOLDER) { // Already exists as correct type return; } if (getType() != FileType.IMAGINARY) { thro...

public void createFolder() throws FileSystemException { synchronized (fs) { if (getType().hasChildren()) { // Already exists as correct type return; } if (getType() != FileType.IMAGINARY) { throw new...

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public void moveTo(FileObject destFile) throws FileSystemException { if (canRenameTo(destFile)) { if (!getParent().isWriteable()) { throw new FileSystemException("vfs.provider/rename-parent-read-only.error", new FileName[]{getName(), getParent().getName()}); ...

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public void testExecuteActionKeep() { boolean isTestPassed = false; Mail aMail = new MailImpl(); MailetContext aMailetContext = new MockMailetContext(); Action action = new ActionKeep(); try { ActionDispatcher.getInstance().execute(action, aMail, ...

public void testExecuteActionKeep() throws MessagingException { boolean isTestPassed = false; Mail aMail = new MailImpl(); MailetContext aMailetContext = new MockMailetContext(); Action action = new ActionKeep(); try { ActionDispatcher.getInstance().execute(ac...

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public FileObject getBaseTestFolder(final FileSystemManager manager) throws Exception { final File baseDir = AbstractVfsTestCase.getTestDirectory(); final URL url = baseDir.toURL(); return manager.resolveFile(url.toExternalForm()); }

public FileObject getBaseTestFolder(final FileSystemManager manager) throws Exception { final File baseDir = AbstractVfsTestCase.getTestDirectoryFile(); final URL url = baseDir.toURL(); return manager.resolveFile(url.toExternalForm()); }

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public static Session createConnection(String hostname, int port, char[] username, char[] password, FileSystemOptions fileSystemOptions) throws FileSystemException { JSch jsch = new JSch(); File sshDir = null; // new style - user passed File knownHostsFile = SftpFileSystemConfigBuilde...

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protected FileObject[] doListChildrenResolved() throws Exception { // List the contents of the folder final Vector vector; final ChannelSftp channel = fileSystem.getChannel(); try { vector = channel.ls(relPath); } finally { fileSystem.putChannel(channel); } if (vector == null) { throw new FileSystemEx...

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protected FileObject[] doListChildrenResolved() throws Exception { // List the contents of the folder final Vector vector; final ChannelSftp channel = fileSystem.getChannel(); try { vector = channel.ls(relPath); } finally { fileSystem.putChannel(channel); } if (vector == null) { throw new FileSystemEx...

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protected FileObject[] doListChildrenResolved() throws Exception { // List the contents of the folder final Vector vector; final ChannelSftp channel = fileSystem.getChannel(); try { vector = channel.ls(relPath); } finally { fileSystem.putChannel(channel); } if (vector == null) { throw new FileSystemEx...

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public TreeModel getTrimmedTreeModel(Set pathSet, DODDLEProject project) { TreeModel treeModel = getDefaultConceptTreeModel(pathSet, project); ConceptTreeNode root = (ConceptTreeNode) treeModel.getRoot(); trimmedConceptSet.clear(); root.setdepth(0); setDefaultDepth(root); // トリミング...

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protected String handleParameter(final String name, final boolean expression, boolean jdbcParam) { Object p; if (expression) { p = parametersParser.evaluate(name, paramsCallback); } else { p = paramsCallback.g...

protected String handleParameter(final String name, final boolean expression, boolean jdbcParam) { Object p; if (expression) { p = getParametersParser().evaluate(name, paramsCallback); } else { p = paramsCallb...

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private void releaseStatement(PreparedStatement ps) { if (statementCache!=null) { statementCache.closeRemovedStatements(); } else { JDBCUtils.closeSilent(ps); } params.clear(); IOUtils.closeSilently(converter); //closing resour...

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public ParametersParser getParametersParser() { return parametersParser; }

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public StatementCache getStatementCache() { return statementCache; }

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public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

public void addFile(final FileObject file) { _addFile(file); try { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

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public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (file.getType().hasChildren()) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

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public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

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public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

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public void addFile(final FileObject file) { synchronized (this.monitorMap) { if (this.monitorMap.get(file.getName()) == null) { this.monitorMap.put(file.getName(), new FileMonitorAgent(this, file)); try { ...

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public Reader open() throws IOException { try { URL u = new URL(url, href); return new InputStreamReader(u.openStream(), charset); } catch (MalformedURLException e) { throw (IOException) new IOException( "Unable to open referenced resource " + href)....

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public Color getIrradiance(ShadingState state, Color diffuseReflectance) { float cosTheta = Vector3.dot(up, state.getNormal()); float sine = (1 - cosTheta * cosTheta) * 0.5f; if (cosTheta > 0) return Color.blend(sky, ground, sine); else return Color.blend(ground, sk...

public Color getIrradiance(ShadingState state, Color diffuseReflectance) { float cosTheta = Vector3.dot(up, state.getNormal()); float sin2 = (1 - cosTheta * cosTheta); float sine = sin2 > 0 ? (float) Math.sqrt(sin2) * 0.5f : 0; if (cosTheta > 0) return Color.blend(sky, ground, sine);...

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private void parseObjectBlock(SunflowAPI api) throws ParserException, IOException { p.checkNextToken("{"); String[] shaders = null; boolean multiShader = false; if (p.peekNextToken("shaders")) { int n = p.getNextInt(); shaders = new String[n]; for (int i ...

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private void parseObjectBlock(SunflowAPI api) throws ParserException, IOException { p.checkNextToken("{"); String[] shaders = null; boolean multiShader = false; if (p.peekNextToken("shaders")) { int n = p.getNextInt(); shaders = new String[n]; for (int i ...

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private void parseObjectBlock(SunflowAPI api) throws ParserException, IOException { p.checkNextToken("{"); String[] shaders = null; boolean multiShader = false; if (p.peekNextToken("shaders")) { int n = p.getNextInt(); shaders = new String[n]; for (int i ...

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private void parseObjectBlock(SunflowAPI api) throws ParserException, IOException { p.checkNextToken("{"); String[] shaders = null; boolean multiShader = false; if (p.peekNextToken("shaders")) { int n = p.getNextInt(); shaders = new String[n]; for (int i ...

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public void close() throws FileSystemException { try { // Close the input stream if ( instr != null ) { try { instr.close(); } catch ( IOException ioe ) { ...

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public void close() throws FileSystemException { try { // Close the input stream if ( instr != null ) { try { instr.close(); } catch ( IOException ioe ) { ...

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public Certificate[] getCertificates() throws FileSystemException { if( !file.exists() ) { final String message = REZ.getString( "get-certificates-no-exist.error", file ); throw new FileSystemException( message ); } return file.doGetCertificates(); }

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public InputStream getInputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "read-folder.error", file ); throw new FileSystemException( message ); } if ( !file.exists() ) { final String message ...

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public InputStream getInputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "read-folder.error", file ); throw new FileSystemException( message ); } if ( !file.exists() ) { final String message ...

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public InputStream getInputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "read-folder.error", file ); throw new FileSystemException( message ); } if ( !file.exists() ) { final String message ...

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public InputStream getInputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "read-folder.error", file ); throw new FileSystemException( message ); } if ( !file.exists() ) { final String message ...

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public long getLastModifiedTime() throws FileSystemException { if( !file.exists() ) { final String message = REZ.getString( "get-last-modified-no-exist.error", file ); throw new FileSystemException( message ); } return file.doGetLastModifiedTime(); }

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public OutputStream getOutputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "write-folder.error", file ); throw new FileSystemException( message ); } if ( state != STATE_NONE ) { final String ...

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public OutputStream getOutputStream() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "write-folder.error", file ); throw new FileSystemException( message ); } if ( state != STATE_NONE ) { final String ...

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public long getSize() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "get-size-folder.error", file ); throw new FileSystemException( message ); } // Do some checking if ( !file.exists() ) { fina...

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public long getSize() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "get-size-folder.error", file ); throw new FileSystemException( message ); } // Do some checking if ( !file.exists() ) { fina...

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public long getSize() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "get-size-folder.error", file ); throw new FileSystemException( message ); } // Do some checking if ( !file.exists() ) { fina...

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public long getSize() throws FileSystemException { if( file.isFolder() ) { final String message = REZ.getString( "get-size-folder.error", file ); throw new FileSystemException( message ); } // Do some checking if ( !file.exists() ) { fina...

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public void setLastModifiedTime( long modTime ) throws FileSystemException { if( !file.exists() ) { final String message = REZ.getString( "set-last-modified-no-exist.error", file ); throw new FileSystemException( message ); } file.doSetLastModifiedTime( modTime )...

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public Connection connect(ConnectionParameters connectionParameters) { //TODO: Add support for output file encoding String urlStr = connectionParameters.getUrl(); String outEnc = connectionParameters.getProperty(OUTPUT_ENCODING); URL url; try { url = new URL(urlStr); ...

public Connection connect(ConnectionParameters connectionParameters) { //TODO: Add support for output file encoding String urlStr = connectionParameters.getUrl(); String outEnc = connectionParameters.getProperty(OUTPUT_ENCODING); URL url; try { url = new URL(connectionP...

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public FileObject getBaseTestFolder(final FileSystemManager manager) throws Exception { final File testDir = AbstractVfsTestCase.getTestDirectory(); return manager.toFileObject(testDir); }

public FileObject getBaseTestFolder(final FileSystemManager manager) throws Exception { final File testDir = AbstractVfsTestCase.getTestDirectoryFile(); return manager.toFileObject(testDir); }

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public FileObject findFile(final FileObject baseFile, final String uri, final FileSystemOptions fileSystemOptions) throws FileSystemException { try { final URL url = new URL(uri); final URL rootUrl = new URL(ur...

public FileObject findFile(final FileObject baseFile, final String uri, final FileSystemOptions fileSystemOptions) throws FileSystemException { try { StringBuffer buf = new StringBuffer(80); String scheme = UriParser.extr...

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