bugged stringlengths 6 599k | fixed stringlengths 10 599k | __index_level_0__ int64 0 1.13M |
|---|---|---|
public void drop(DropTargetDropEvent dtde) { PlayPen pp = tp.getPlayPen(); Point loc = pp.unzoomPoint(new Point(dtde.getLocation())); loc.x -= tp.getX(); loc.y -= tp.getY(); logger.debug("Drop target drop event on "+tp.getName()+": "+dtde); Transferable t = dtde.getTransferable(); DataFlavor importFlavo... | public void drop(DropTargetDropEvent dtde) { PlayPen pp = tp.getPlayPen(); Point loc = pp.unzoomPoint(new Point(dtde.getLocation())); loc.x -= tp.getX(); loc.y -= tp.getY(); logger.debug("Drop target drop event on "+tp.getName()+": "+dtde); Transferable t = dtde.getTransferable(); DataFlavor importFlavo... | 1,110,557 |
public void drop(DropTargetDropEvent dtde) { PlayPen pp = tp.getPlayPen(); Point loc = pp.unzoomPoint(new Point(dtde.getLocation())); loc.x -= tp.getX(); loc.y -= tp.getY(); logger.debug("Drop target drop event on "+tp.getName()+": "+dtde); Transferable t = dtde.getTransferable(); DataFlavor importFlavo... | public void drop(DropTargetDropEvent dtde) { PlayPen pp = tp.getPlayPen(); Point loc = pp.unzoomPoint(new Point(dtde.getLocation())); loc.x -= tp.getX(); loc.y -= tp.getY(); logger.debug("Drop target drop event on "+tp.getName()+": "+dtde); Transferable t = dtde.getTransferable(); DataFlavor importFlavo... | 1,110,558 |
public void mouseClicked(MouseEvent evt) { if (evt.getClickCount() == 2) { TablePane tp = (TablePane) evt.getSource(); if (tp.isSelected()) { ArchitectFrame af = ArchitectFrame.getMainInstance(); int selectedColIndex = tp.getSelectedColumnIndex(); if (selectedColIndex == COLUMN_INDEX_NONE) { af.editT... | public void mouseClicked(MouseEvent evt) { if ((evt.getModifiers() & MouseEvent.BUTTON1_MASK) != 0 && evt.getClickCount() == 2) { TablePane tp = (TablePane) evt.getSource(); if (tp.isSelected()) { ArchitectFrame af = ArchitectFrame.getMainInstance(); int selectedColIndex = tp.getSelectedColumnIndex(); if... | 1,110,559 |
void browse(int browseType){ String name; String markerInfoName = ""; HaploView h = (HaploView) this.getParent(); h.fc.setSelectedFile(new File("")); int returned = h.fc.showOpenDialog(this); if (returned != JFileChooser.APPROVE_OPTION) return; File file = h.fc.getSe... | void browse(int browseType){ String name; String markerInfoName = ""; HaploView h = (HaploView) this.getParent(); h.fc.setSelectedFile(new File("")); int returned = h.fc.showOpenDialog(this); if (returned != JFileChooser.APPROVE_OPTION) return; File file = h.fc.getSe... | 1,110,560 |
public static String appendURLParam(String url, String param, String value){ StringBuffer urlString = new StringBuffer(url); if (url.indexOf("?") == -1) { urlString.append("?"); }else if(url.endsWith("&") == false) { urlString.append("&"); } urlString.append(... | public static String appendURLParam(String url, String param, String value){ StringBuffer urlString = new StringBuffer(url); if (url.indexOf("?") == -1) { urlString.append("?"); }else if(url.endsWith("&") == false) { urlString.append("&"); } urlString.append(... | 1,110,563 |
public void doTag(XMLOutput output) throws Exception { invokeBody(output); if (name == null) { throw new MissingAttributeException("name"); } if (dynaClass == null) { throw new MissingAttributeException("dynaClass"); } final DynaClass theDynaClass = dynaClass; final Map ... | public void doTag(XMLOutput output) throws Exception { invokeBody(output); if (name == null) { throw new MissingAttributeException("name"); } if (dynaClass == null) { throw new MissingAttributeException("dynaClass"); } final DynaClass theDynaClass = dynaClass; final Map ... | 1,110,564 |
public Tag createTag() { return new DynamicDynaBeanTag(theDynaClass, beanAttributes, varAttribute); } | public Tag createTag(String name, Attributes attributes) { return new DynamicDynaBeanTag(theDynaClass, beanAttributes, varAttribute); } | 1,110,565 |
public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | 1,110,566 |
public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | 1,110,567 |
public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | public String computeDPrime(int a, int b, int c, int d, int e, double f){ int i,j,k,count,itmp; int low_i = 0; int high_i = 0; double[] nAA = new double[1]; double[] nBB = new double[1]; double[] nAB = new double[1]; double[] nBA = new double[1]; double[] pAA = new double[1]; double[] pBB = new double[1]; double[... | 1,110,568 |
private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | private File getNewFname( java.util.Date date, String strExtension ) { log.debug( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPattern( "yy... | 1,110,569 |
private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | 1,110,570 |
private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | 1,110,571 |
private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | private File getNewFname( java.util.Date date, String strExtension ) { System.err.println( "getNewFname " + date + " " + strExtension ); SimpleDateFormat fmt = new SimpleDateFormat( "yyyy" ); String strYear = fmt.format( date ); fmt.applyPattern( "yyyyMM" ); String strMonth = fmt.format( date ); fmt.applyPat... | 1,110,572 |
public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | 1,110,573 |
public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | 1,110,574 |
public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | public String getRatios() { //if the array is null this is a block-title node, not an actual hap if (counts == null){ return (""); } nf.setMinimumFractionDigits(1); nf.setMaximumFractionDigits(1); for(int i= 0;i<counts.length;i++) { for(int j= 0;j<coun... | 1,110,575 |
public void mouseClicked(MouseEvent evt) { if (evt.getClickCount() == 2) { ArchitectFrame.getMainInstance().editRelationshipAction.actionPerformed (new ActionEvent(evt.getSource(), ActionEvent.ACTION_PERFORMED, "DoubleClick")); } } | public void mouseClicked(MouseEvent evt) { if (evt.getClickCount() == 2) { ArchitectFrame.getMainInstance().editRelationshipAction.actionPerformed (new ActionEvent(evt.getSource(), ActionEvent.ACTION_PERFORMED, ArchitectSwingConstants.ACTION_COMMAND_SRC_PLAYPEN)); } } | 1,110,576 |
public PhotoCollection getCollection() { return photoCollection; } | public PhotoCollection getCollection() { if ( photoCollection != null ) { return photoCollection.getOrigCollection(); } return null; } | 1,110,577 |
public Tag createTag ( ) throws Exception { return new ConstraintTag ( this ); } | public Tag createTag(String name, Attributes attributes) throws Exception { return new ConstraintTag ( this ); } | 1,110,578 |
public Tag createTag ( ) { return new ConstraintTag ( this ); // still scratching my head about "this" usage... } | public Tag createTag(String name, Attributes attributes) { return new ConstraintTag ( this ); // still scratching my head about "this" usage... } | 1,110,579 |
public ActionForward execute(WebContext context, ActionMapping mapping, ActionForm actionForm, HttpServletRequest request, HttpServletResponse response) throws Exception { ... | public ActionForward execute(WebContext context, ActionMapping mapping, ActionForm actionForm, HttpServletRequest request, HttpServletResponse response) throws Exception { ... | 1,110,581 |
public String toIdentifier(String logicalName, String physicalName) { // replace spaces with underscores if (logicalName == null) return null; logger.debug("getting physical name for: " + logicalName); String ident = logicalName.replace(' ','_'); logger.debug("after replace of spaces: " + ident); // see if it's ... | private String toIdentifier(String logicalName, String physicalName) { // replace spaces with underscores if (logicalName == null) return null; logger.debug("getting physical name for: " + logicalName); String ident = logicalName.replace(' ','_'); logger.debug("after replace of spaces: " + ident); // see if it's... | 1,110,582 |
public void doTag(XMLOutput output) throws JellyTagException { StylesheetTag tag = (StylesheetTag) findAncestorWithClass( StylesheetTag.class ); if (tag == null) { throw new JellyTagException( "<applyTemplates> tag must be inside a <stylesheet> tag" ); } ... | public void doTag(XMLOutput output) throws JellyTagException { StylesheetTag tag = (StylesheetTag) findAncestorWithClass( StylesheetTag.class ); if (tag == null) { throw new JellyTagException( "<applyTemplates> tag must be inside a <stylesheet> tag" ); } ... | 1,110,583 |
public void doTag(XMLOutput output) throws JellyTagException { StylesheetTag tag = (StylesheetTag) findAncestorWithClass( StylesheetTag.class ); if (tag == null) { throw new JellyTagException( "<applyTemplates> tag must be inside a <stylesheet> tag" ); } ... | public void doTag(XMLOutput output) throws JellyTagException { StylesheetTag tag = (StylesheetTag) findAncestorWithClass( StylesheetTag.class ); if (tag == null) { throw new JellyTagException( "<applyTemplates> tag must be inside a <stylesheet> tag" ); } ... | 1,110,584 |
public static void setDataChrom(String chrom) { dataChrom = chrom.toLowerCase(); } | public static void setDataChrom(String chrom) { if (chrom != null){ dataChrom = chrom.toLowerCase(); }else{ dataChrom = null; } } | 1,110,585 |
public static Vector calcCCTDT(Vector chromosomes){ Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for (int i = 0; i < numMarkers; i++){ TDTResult thisResult = new TDTResult(Chromosome.getUnfilteredMarker(i)); for (int j = 0; j < chromosome... | public static Vector calcCCTDT(PedFile pf){ Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for (int i = 0; i < numMarkers; i++){ TDTResult thisResult = new TDTResult(Chromosome.getUnfilteredMarker(i)); for (int j = 0; j < chromosomes.size()... | 1,110,586 |
public static Vector calcCCTDT(Vector chromosomes){ Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for (int i = 0; i < numMarkers; i++){ TDTResult thisResult = new TDTResult(Chromosome.getUnfilteredMarker(i)); for (int j = 0; j < chromosome... | public static Vector calcCCTDT(Vector chromosomes){ Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for (int i = 0; i < numMarkers; i++){ TDTResult thisResult = new TDTResult(Chromosome.getUnfilteredMarker(i)); for (int j = 0; j < chromosome... | 1,110,587 |
public static Vector calcTrioTDT(Vector chromosomes) { Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); } for(int i=0;i<chromosomes.size()-3;i++)... | public static Vector calcTrioTDT(PedFile pf) throws PedFileException{ Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); } for(int i=0;i<chromosome... | 1,110,588 |
public static Vector calcTrioTDT(Vector chromosomes) { Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); } for(int i=0;i<chromosomes.size()-3;i++)... | public static Vector calcTrioTDT(Vector chromosomes) { Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); } for(int i=0;i<chromosomes.size()-3;i++)... | 1,110,589 |
public static Vector calcTrioTDT(Vector chromosomes) { Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); } for(int i=0;i<chromosomes.size()-3;i++)... | public static Vector calcTrioTDT(Vector chromosomes) { Vector results = new Vector(); int numMarkers = Chromosome.getUnfilteredSize(); for(int k=0;k<numMarkers;k++){ results.add(new TDTResult(Chromosome.getUnfilteredMarker(k))); results.add(thisResult); } for(int i=0;i<... | 1,110,590 |
public Statement createStatement() throws SQLException { return connection.createStatement(); } | public Statement createStatement() throws SQLException { return connection.createStatement(); } | 1,110,591 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; long poss_full;//, best, h1, h2; int num_indivs=0... | 1,110,592 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | 1,110,593 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | 1,110,594 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | 1,110,595 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int num_indivs=0;... | 1,110,596 |
public void actionPerformed(ActionEvent e) { String cmd = e.getActionCommand(); if ( cmd == PHOTO_PROPS_CMD ) { showSelectionPropsDialog(); } else if ( cmd == PHOTO_SHOW_CMD ) { showSelectedPhoto(); } else if ( cmd == PHOTO_ROTATE_CW_CMD ) { rotateSelecte... | public void actionPerformed(ActionEvent e) { String cmd = e.getActionCommand(); if ( cmd == PHOTO_PROPS_CMD ) { showSelectionPropsDialog(); } else if ( cmd == PHOTO_SHOW_CMD ) { showSelectedPhoto(); } else if ( cmd == PHOTO_ROTATE_CW_CMD ) { rotateSelecte... | 1,110,598 |
void createUI() { photoTransferHandler = new PhotoCollectionTransferHandler( this ); setTransferHandler( photoTransferHandler ); addMouseListener( this ); addMouseMotionListener( this ); // Create the popup menu popup = new JPopupMenu(); JMenuItem props... | void createUI() { photoTransferHandler = new PhotoCollectionTransferHandler( this ); setTransferHandler( photoTransferHandler ); addMouseListener( this ); addMouseMotionListener( this ); // Create the popup menu popup = new JPopupMenu(); JMenuItem props... | 1,110,600 |
private void paintThumbnail( Graphics2D g2, PhotoInfo photo, int startx, int starty, boolean isSelected ) { // Current position in which attributes can be drawn int ypos = starty + rowHeight/2; if ( photo != null ) { Thumbnail thumbnail = photo.getThumbnail(); if (... | private void paintThumbnail( Graphics2D g2, PhotoInfo photo, int startx, int starty, boolean isSelected ) { // Current position in which attributes can be drawn int ypos = starty + rowHeight/2; if ( photo != null ) { Thumbnail thumbnail = photo.getThumbnail(); if (... | 1,110,602 |
private void paintThumbnail( Graphics2D g2, PhotoInfo photo, int startx, int starty, boolean isSelected ) { // Current position in which attributes can be drawn int ypos = starty + rowHeight/2; if ( photo != null ) { Thumbnail thumbnail = photo.getThumbnail(); if (... | private void paintThumbnail( Graphics2D g2, PhotoInfo photo, int startx, int starty, boolean isSelected ) { // Current position in which attributes can be drawn int ypos = starty + rowHeight/2; if ( photo != null ) { Thumbnail thumbnail = photo.getThumbnail(); if (... | 1,110,603 |
public void postReport() { logger.debug(toString()); if (numReportsThisRun++ > MAX_REPORT_TRIES) { logger.info( String.format( "Not logging this error, threshold of %d exceeded", MAX_REPORT_TRIES)); return; } exception.printStackTra... | public void postReport() { logger.debug("posting report: "+toString()); if (numReportsThisRun++ > MAX_REPORT_TRIES) { logger.info( String.format( "Not logging this error, threshold of %d exceeded", MAX_REPORT_TRIES)); return; } exce... | 1,110,604 |
public void postReport() { logger.debug(toString()); if (numReportsThisRun++ > MAX_REPORT_TRIES) { logger.info( String.format( "Not logging this error, threshold of %d exceeded", MAX_REPORT_TRIES)); return; } exception.printStackTra... | public void postReport() { logger.debug(toString()); if (numReportsThisRun++ > MAX_REPORT_TRIES) { logger.info( String.format( "Not logging this error, threshold of %d exceeded", MAX_REPORT_TRIES)); return; } exception.printStackTra... | 1,110,605 |
public PresentationObject getTopicsOverView(IWContext iwc){ Table T = new Table(); int row = 1; T.add(getTopicLink(-1,iwrb.getLocalizedString("new_topic","New topic")),1,row); row++; T.add(tf.format(iwrb.getLocalizedString("name","Name"),tf.HEADER),1,row); T.add(tf.format(iwrb.getLocalizedString("category",... | public PresentationObject getTopicsOverView(IWContext iwc){ Table T = new Table(); int row = 1; T.add(getTopicLink(-1,iwrb.getLocalizedString("new_topic","New topic")),1,row); row++; T.add(tf.format(iwrb.getLocalizedString("name","Name"),tf.HEADER),1,row); T.add(tf.format(iwrb.getLocalizedString("category",... | 1,110,607 |
public void refreshTable(){ this.removeAll(); snpsByName = new Hashtable(); this.setLayout(new BoxLayout(this,BoxLayout.Y_AXIS)); Vector columnNames = new Vector(); Vector tableData = new Vector(); columnNames.add("#"); columnNames.add("Name"); columnNames.add... | public void refreshTable(){ this.removeAll(); snpsByName = new Hashtable(); this.setLayout(new BoxLayout(this,BoxLayout.Y_AXIS)); Vector columnNames = new Vector(); Vector tableData = new Vector(); columnNames.add("#"); columnNames.add("Name"); columnNames.add... | 1,110,608 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,609 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,610 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,611 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,612 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,613 |
void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist ... | 1,110,614 |
public ActionForward execute(WebContext context, ActionMapping mapping, ActionForm actionForm, HttpServletRequest request, HttpServletResponse response) throws Exception{ ... | public ActionForward execute(WebContext context, ActionMapping mapping, ActionForm actionForm, HttpServletRequest request, HttpServletResponse response) throws Exception{ ... | 1,110,615 |
public UserList(int count, String namePrefix, String domain, String password) { this(count, namePrefix, domain); m_password = password; } | public UserList(int count, String namePrefix, String domain, String password) { this(count, namePrefix, domain); m_password = password; } | 1,110,616 |
protected void setup() { GenericDDLGenerator ddlg = project.getDDLGenerator(); setLayout(new FormLayout()); add(new JLabel("Allow Connection?")); add(allowConnection = new JCheckBox()); allowConnection.setSelected(ddlg.getAllowConnection()); add(new JLabel("Output File")); JPanel p = new JPanel(new FlowLayout()... | protected void setup() { GenericDDLGenerator ddlg = project.getDDLGenerator(); setLayout(new FormLayout()); add(new JLabel("Allow Connection?")); add(allowConnection = new JCheckBox()); allowConnection.setSelected(ddlg.getAllowConnection()); add(new JLabel("Output File")); JPanel p = new JPanel(new FlowLayout()... | 1,110,617 |
protected void fireDbChildrenInserted(int[] newIndices, List newChildren) { System.out.println("SQLObject: firing dbChildrenInserted event"); SQLObjectEvent e = new SQLObjectEvent (this, newIndices, (SQLObject[]) newChildren.toArray(new SQLObject[newChildren.size()])); Iterator it = getSqlObjectListeners().... | protected void fireDbChildrenInserted(int[] newIndices, List newChildren) { System.out.println(getClass().getName()+": firing dbChildrenInserted event"); SQLObjectEvent e = new SQLObjectEvent (this, newIndices, (SQLObject[]) newChildren.toArray(new SQLObject[newChildren.size()])); Iterator it = getSqlObject... | 1,110,619 |
protected void fireDbChildrenInserted(int[] newIndices, List newChildren) { System.out.println("SQLObject: firing dbChildrenInserted event"); SQLObjectEvent e = new SQLObjectEvent (this, newIndices, (SQLObject[]) newChildren.toArray(new SQLObject[newChildren.size()])); Iterator it = getSqlObjectListeners().... | protected void fireDbChildrenInserted(int[] newIndices, List newChildren) { System.out.println("SQLObject: firing dbChildrenInserted event"); SQLObjectEvent e = new SQLObjectEvent (this, newIndices, (SQLObject[]) newChildren.toArray(new SQLObject[newChildren.size()])); Iterator it = getSqlObjectListeners().... | 1,110,620 |
protected TagScript createStaticTag( String namespaceURI, String localName, Attributes list ) throws SAXException { try { Tag tag = new StaticTag( namespaceURI, localName ); TagScript script = new TagScript( tag ); // now iterate through through th... | protected TagScript createStaticTag( String namespaceURI, String localName, Attributes list ) throws SAXException { try { Tag tag = new StaticTag( namespaceURI, localName ); TagScript script = new TagScript( tag ); // now iterate through through th... | 1,110,621 |
protected TagScript createTag( String namespaceURI, String localName, Attributes list ) throws SAXException { try { // use the URI to load a taglib TagLibrary taglib = (TagLibrary) taglibs.get( namespaceURI ); if ( taglib == null ) { if ( namespaceURI != null &... | protected TagScript createTag( String namespaceURI, String localName, Attributes list ) throws SAXException { try { // use the URI to load a taglib TagLibrary taglib = (TagLibrary) taglibs.get( namespaceURI ); if ( taglib == null ) { if ( namespaceURI != null &... | 1,110,622 |
public Script compileScript() throws Exception { XMLParser parser = new XMLParser(); parser.setContext( getContext() ); Script script = parser.parse( getUrl().openStream() ); script = script.compile(); if ( log.isDebugEnabled() ) { log.debug( "Compiled script: "... | public Script compileScript() throws Exception { XMLParser parser = new XMLParser(); parser.setContext( getContext() ); Script script = parser.parse( getUrl().openStream() ); script = script.compile(); if ( log.isDebugEnabled() ) { log.debug( "Compiled script: "... | 1,110,623 |
public static void main(String[] args) throws Exception { if ( args.length <= 0 ) { System.out.println( "Usage: Jelly scriptFile [outputFile]" ); return; } Jelly jelly = new Jelly(); jelly.setScript( args[0] ); /* // later we might wann... | public static void main(String[] args) throws Exception { if ( args.length <= 0 ) { System.out.println( "Usage: Jelly scriptFile [outputFile]" ); return; } Jelly jelly = new Jelly(); jelly.setScript( args[0] ); /* // later we might wann... | 1,110,624 |
public void setCropBounds( Rectangle2D cropBounds ) { ODMGXAWrapper txw = new ODMGXAWrapper(); txw.lock( this, Transaction.WRITE ); if ( !cropBounds.equals( getCropBounds() ) ) { // Rotation changes, invalidate the thumbnail thumbnail = null; } cropMinX = cro... | public void setCropBounds( Rectangle2D cropBounds ) { ODMGXAWrapper txw = new ODMGXAWrapper(); txw.lock( this, Transaction.WRITE ); if ( !cropBounds.equals( getCropBounds() ) ) { // Rotation changes, invalidate the thumbnail invalidateThumbnail(); } cropMinX ... | 1,110,628 |
public void setPrefRotation(double v) { ODMGXAWrapper txw = new ODMGXAWrapper(); txw.lock( this, Transaction.WRITE ); if ( v != prefRotation ) { // Rotation changes, invalidate the thumbnail thumbnail = null; } this.prefRotation = v; modified(); ... | public void setPrefRotation(double v) { ODMGXAWrapper txw = new ODMGXAWrapper(); txw.lock( this, Transaction.WRITE ); if ( v != prefRotation ) { // Rotation changes, invalidate the thumbnail invalidateThumbnail(); } this.prefRotation = v; modified(); ... | 1,110,629 |
public void run(JellyContext context, XMLOutput output) throws JellyTagException { try { startNamespacePrefixes(output); } catch (SAXException e) { throw new JellyTagException("could not start namespace prefixes",e); } Tag tag = null; try { tag = g... | public void run(JellyContext context, XMLOutput output) throws JellyTagException { try { startNamespacePrefixes(output); } catch (SAXException e) { throw new JellyTagException("could not start namespace prefixes",e); } Tag tag = null; try { tag = g... | 1,110,631 |
public void run(JellyContext context, XMLOutput output) throws JellyTagException { try { startNamespacePrefixes(output); } catch (SAXException e) { throw new JellyTagException("could not start namespace prefixes",e); } Tag tag = null; try { tag = g... | public void run(JellyContext context, XMLOutput output) throws JellyTagException { try { startNamespacePrefixes(output); } catch (SAXException e) { throw new JellyTagException("could not start namespace prefixes",e); } Tag tag = null; try { tag = g... | 1,110,632 |
public void actionPerformed(ActionEvent e) { logger.debug("DBCS Action invoked"); ArchitectDataSource newDS = dbcsPanel.getDbcs(); String curName = null; for (Component c : ((TextPanel)dbcsPanel.getComponents()[0]).getComponents()) { if ("dbNameField".equals(c.getName())){ curName = ((JTextField) c).getText(... | public void actionPerformed(ActionEvent e) { logger.debug("DBCS Action invoked"); ArchitectDataSource newDS = dbcsPanel.getDbcs(); String curName = null; for (Component c : ((TextPanel)dbcsPanel.getComponents()[0]).getComponents()) { if ("dbNameField".equals(c.getName())){ curName = ((JTextField) c).getText(... | 1,110,633 |
public void characters(char ch[], int start, int length) throws SAXException { contentHandler.characters(ch, start, length); } | public void characters(char[] ch, int start, int length) throws SAXException { contentHandler.characters(ch, start, length); } | 1,110,636 |
public static XMLOutput createXMLOutput(XMLReader xmlReader) { XMLOutput output = new XMLOutput(xmlReader.getContentHandler()); // isn't it lovely what we've got to do to find the LexicalHandler... ;-) for (int i = 0; i < LEXICAL_HANDLER_NAMES.length; i++) { try { Obje... | public static XMLOutput createXMLOutput(XMLReader xmlReader) { XMLOutput output = new XMLOutput(xmlReader.getContentHandler()); // isn't it lovely what we've got to do to find the LexicalHandler... ;-) for (int i = 0; i < LEXICAL_HANDLER_NAMES.length; i++) { try { Obje... | 1,110,637 |
public void endPrefixMapping(String prefix) throws SAXException { contentHandler.endPrefixMapping(prefix); } | public void endPrefixMapping(String prefix) throws SAXException { namespaceStack.popNamespace(prefix); } | 1,110,638 |
public void ignorableWhitespace(char ch[], int start, int length) throws SAXException { contentHandler.ignorableWhitespace(ch, start, length); } | public void ignorableWhitespace(char[] ch, int start, int length) throws SAXException { contentHandler.ignorableWhitespace(ch, start, length); } | 1,110,640 |
public void startPrefixMapping(String prefix, String uri) throws SAXException { contentHandler.startPrefixMapping(prefix, uri); } | public void startPrefixMapping(String prefix, String uri) throws SAXException { namespaceStack.pushNamespace(prefix, uri); } | 1,110,641 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | 1,110,642 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | 1,110,643 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | 1,110,644 |
private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | private void full_em_breakup( byte[][] input_haplos, int[] block_size, int numTrios, Vector affStatus) throws HaploViewException{ int num_poss, iter;//, maxk, numk; double total;//, maxprob; int block, start_locus, end_locus, biggest_block_size; int poss_full;//, best, h1, h2; int... | 1,110,645 |
public void run(Context context, XMLOutput output) throws Exception { getBody().run( context, output ); } | public void run(JellyContext context, XMLOutput output) throws Exception { getBody().run( context, output ); } | 1,110,647 |
private double getGenoPercent(int het, int hom, int missing){ double genoPct = 100.0*(het+hom)/(het+hom+missing); return genoPct; } | private double getGenoPercent(int het, int hom, int missing){ double genoPct = 100.0*(het+hom)/(het+hom+missing); return genoPct; } | 1,110,648 |
public void mousePressed (MouseEvent e) { Rectangle blockselector = new Rectangle(clickXShift-boxRadius,clickYShift - boxRadius, (Chromosome.getFilteredSize()*boxSize), boxSize); //if users right clicks & holds, pop up the info if ((e.getModifiers() & InputEvent.BUTTON3_MASK) == ... | public void mousePressed (MouseEvent e) { Rectangle blockselector = new Rectangle(clickXShift-boxRadius,clickYShift - boxRadius, (Chromosome.getFilteredSize()*boxSize), boxSize); //if users right clicks & holds, pop up the info if ((e.getModifiers() & InputEvent.BUTTON3_MASK) == ... | 1,110,649 |
public void run(Context context, XMLOutput output) throws Exception { DynaTag dynaTag = (DynaTag) tag; // ### probably compiling this to 2 arrays might be quicker and smaller for ( Iterator iter = attributes.entrySet().iterator(); iter.hasNext(); ) { Map.Entry entry =... | public void run(JellyContext context, XMLOutput output) throws Exception { DynaTag dynaTag = (DynaTag) tag; // ### probably compiling this to 2 arrays might be quicker and smaller for ( Iterator iter = attributes.entrySet().iterator(); iter.hasNext(); ) { Map.Entry en... | 1,110,650 |
protected void cleanup() { if(addToPP) { pp.unzoomPoint(p); logger.debug("Placing table at: "+p); pp.addImpl(tp,p,pp.getPPComponentCount()); try { pp.db.addChild(tp.getModel()); pp.selectNone(); tp.setSelected(true); mouseMode = mouseModeType.SELECT_TABLE; } catch (ArchitectExceptio... | protected void cleanup() { if(addToPP) { pp.unzoomPoint(p); logger.debug("Placing table at: "+p); pp.addImpl(tp,p,pp.getPPComponentCount()); try { pp.db.addChild(tp.getModel()); pp.selectNone(); tp.setSelected(true); mouseMode = MouseModeType.SELECT_TABLE; } catch (ArchitectExceptio... | 1,110,651 |
public void mouseMoved(MouseEvent evt) { if (rubberBand != null) { // repaint old region in case of shrinkage Rectangle dirtyRegion = zoomRect(new Rectangle(rubberBand)); Point p = unzoomPoint(evt.getPoint()); rubberBand.setBounds(rubberBandOrigin.x, rubberBandOrigin.y, 0, 0); rubberBand.add(p); ... | public void mouseMoved(MouseEvent evt) { if (rubberBand != null) { // repaint old region in case of shrinkage Rectangle dirtyRegion = zoomRect(new Rectangle(rubberBand)); Point p = unzoomPoint(evt.getPoint()); rubberBand.setBounds(rubberBandOrigin.x, rubberBandOrigin.y, 0, 0); rubberBand.add(p); ... | 1,110,652 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,653 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,654 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,655 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,656 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,657 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,658 |
public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | public void mousePressed(MouseEvent evt) { requestFocus(); maybeShowPopup(evt); Point p = evt.getPoint(); unzoomPoint(p); PlayPenComponent c = contentPane.getComponentAt(p); if (c != null) p.translate(-c.getX(), -c.getY()); if (c instanceof Relationship) { Relationship r = (Relationship) c; ... | 1,110,659 |
public void mouseReleased(MouseEvent evt) { draggingTablePanes = false; if (rubberBand != null) { if (evt.getButton() == MouseEvent.BUTTON1) { Rectangle dirtyRegion = rubberBand; rubberBandOrigin = null; rubberBand = null; zoomRect(dirtyRegion); repaintRubberBandRegion(dirtyRegion... | public void mouseReleased(MouseEvent evt) { draggingTablePanes = false; if (rubberBand != null) { if (evt.getButton() == MouseEvent.BUTTON1) { Rectangle dirtyRegion = rubberBand; rubberBandOrigin = null; rubberBand = null; zoomRect(dirtyRegion); repaintRubberBandRegion(dirtyRegion... | 1,110,660 |
public void mouseReleased(MouseEvent evt) { draggingTablePanes = false; if (rubberBand != null) { if (evt.getButton() == MouseEvent.BUTTON1) { Rectangle dirtyRegion = rubberBand; rubberBandOrigin = null; rubberBand = null; zoomRect(dirtyRegion); repaintRubberBandRegion(dirtyRegion... | public void mouseReleased(MouseEvent evt) { draggingTablePanes = false; if (rubberBand != null) { if (evt.getButton() == MouseEvent.BUTTON1) { Rectangle dirtyRegion = rubberBand; rubberBandOrigin = null; rubberBand = null; zoomRect(dirtyRegion); repaintRubberBandRegion(dirtyRegion... | 1,110,661 |
public static void setMouseMode(mouseModeType mouseMode) { PlayPen.mouseMode = mouseMode; } | public static void setMouseMode(MouseModeType mouseMode) { PlayPen.mouseMode = mouseMode; } | 1,110,663 |
public void paintComponent(Graphics g){ Graphics2D g2 = (Graphics2D) g; Dimension size = getSize(); Dimension pref = getPreferredSize(); Rectangle visRect = getVisibleRect(); /* boxSize = ((clipRect.width-2*H_BORDER)/dPrimeTable.length-1); if (boxSize... | public void paintComponent(Graphics g){ Graphics2D g2 = (Graphics2D) g; Dimension size = getSize(); Dimension pref = getPreferredSize(); Rectangle visRect = getVisibleRect(); /* boxSize = ((clipRect.width-2*H_BORDER)/dPrimeTable.length-1); if (boxSize... | 1,110,665 |
private void processFile(String fileName,int fileType,String infoFileName){ try { int outputType; long maxDistance; long negMaxDistance; HaploData textData; File OutputFile; File inputFile; inputFile = new File(fileName); ... | private void processFile(String fileName,int fileType,String infoFileName){ try { int outputType; long maxDistance; long negMaxDistance; HaploData textData; File OutputFile; File inputFile; inputFile = new File(fileName); ... | 1,110,666 |
public void login(ServiceContext context, String username, String password) throws ServiceException{ LoginCallbackHandler callbackHandler = new LoginCallbackHandler(username, password); User user = null; UserManager userManager = UserMana... | public void login(ServiceContext context, String username, String password) throws ServiceException{ LoginCallbackHandler callbackHandler = new LoginCallbackHandler(username, password); User user = null; UserManager userManager = UserMana... | 1,110,667 |
public void logout(ServiceContext context, User user)throws ServiceException{ try{ loginContext.logout(); UserActivityLogger.getInstance().logActivity(user.getName(), "logged out successfully"); }catch(LoginException lex){ throw new ServiceException(... | public void logout(ServiceContext context, User user)throws ServiceException{ try{ loginContext.logout(); UserActivityLogger.getInstance().logActivity(user.getName(), "logged out successfully"); }catch(LoginException lex){ throw new ServiceException(... | 1,110,668 |
public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | 1,110,669 |
public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | 1,110,670 |
public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | 1,110,671 |
public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | public Point closestEdgePoint(TablePane tp, Point p) { Dimension tpsize = tp.getSize(); // clip point p to inside of tp Point bcp = new Point(Math.max(0, Math.min(tpsize.width, p.x)), Math.max(0, Math.min(tpsize.height, p.y))); boolean adjustX = bcp.y != 0 && bcp.y != tpsize.height; boolean adjustY = bc... | 1,110,672 |
void createNewFolder() { if ( selected != null ) { String newName = (String) JOptionPane.showInputDialog( this, "Enter name for new folder", "New folder", JOptionPane.PLAIN_MESSAGE, null, null, "New folder" ); if ( newName != null ) { PhotoFolder newFolder = PhotoFolder.create( new... | void createNewFolder() { if ( selected != null ) { String newName = (String) JOptionPane.showInputDialog( this, "Enter name for new folder", "New folder", JOptionPane.PLAIN_MESSAGE, null, null, "New folder" ); if ( newName != null ) { PhotoFolder newFolder = PhotoFolder.create( new... | 1,110,674 |
void renameSelectedFolder() { if ( selected != null ) { String origName = selected.getName(); String newName = (String) JOptionPane.showInputDialog( this, "Enter new name", "Rename folder", JOptionPane.PLAIN_MESSAGE, null, null, origName ); if ( newName != null ) { PhotoFolder f = s... | void renameSelectedFolder() { if ( selected != null ) { String origName = selected.getName(); String newName = (String) JOptionPane.showInputDialog( this, "Enter new name", "Rename folder", JOptionPane.PLAIN_MESSAGE, null, null, origName ); if ( newName != null ) { PhotoFolder f = s... | 1,110,675 |
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