bugged stringlengths 4 228k | fixed stringlengths 0 96.3M | __index_level_0__ int64 0 481k |
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def index(self): if 'latitude' in request.params and 'longitude' in request.params: latitude = float(request.params['latitude']) longitude = float(request.params['longitude']) if 'easting' in request.params: easting = float(request.params['easting']) if 'northing' in request.params: northing = float(request.params['nor... | def index(self): if 'latitude' in request.params and 'longitude' in request.params: latitude = float(request.params['latitude']) longitude = float(request.params['longitude']) if 'easting' in request.params: easting = float(request.params['easting']) if 'northing' in request.params: northing = float(request.params['nor... | 464,600 |
def index(self, format='json'): """GET /: return all features.""" # If no filter argument is passed to the protocol index method # then the default MapFish filter is used. This default filter # is constructed based on the box, lon, lat, tolerance GET # params. # # If you need your own filter with application-specific p... | def index(self, format='json'): """GET /: return all features.""" # If no filter argument is passed to the protocol index method # then the default MapFish filter is used. This default filter # is constructed based on the box, lon, lat, tolerance GET # params. # # If you need your own filter with application-specific p... | 464,601 |
def index(self, format='json'): """GET /: return all features.""" # If no filter argument is passed to the protocol index method # then the default MapFish filter is used. This default filter # is constructed based on the box, lon, lat, tolerance GET # params. # # If you need your own filter with application-specific p... | def index(self, format='json'): """GET /: return all features.""" # If no filter argument is passed to the protocol index method # then the default MapFish filter is used. This default filter # is constructed based on the box, lon, lat, tolerance GET # params. # # If you need your own filter with application-specific p... | 464,602 |
def fullTextSearch(self,request): # addresses/fullTextSearch?fields=street,city,housenumber&query=ch%20du%2028&tolerance=0.005&easting=6.62379551&northing=46.51687241&limit=20&distinct=true # Read request parameters fields = request.params['fields'] | def fullTextSearch(self,request): # addresses/fullTextSearch?fields=street,city,housenumber&query=ch%20du%2028&tolerance=0.005&easting=6.62379551&northing=46.51687241&limit=20&distinct=true # Read request parameters fields = request.params['fields'] | 464,603 |
def parseTextExtension(parent): yield UInt8(parent, "block_size", "Block Size") yield UInt16(self, "left", "Text Grid Left") yield UInt16(self, "top", "Text Grid Top") yield UInt16(self, "width", "Text Grid Width") yield UInt16(self, "height", "Text Grid Height") yield UInt8(parent, "cell_width", "Character Cell Width"... | def parseTextExtension(parent): yield UInt8(parent, "block_size", "Block Size") yield UInt16(parent, "left", "Text Grid Left") yield UInt16(parent, "top", "Text Grid Top") yield UInt16(parent, "width", "Text Grid Width") yield UInt16(parent, "height", "Text Grid Height") yield UInt8(parent, "cell_width", "Character Cel... | 464,604 |
def parseTextExtension(parent): yield UInt8(parent, "block_size", "Block Size") yield UInt16(self, "left", "Text Grid Left") yield UInt16(self, "top", "Text Grid Top") yield UInt16(self, "width", "Text Grid Width") yield UInt16(self, "height", "Text Grid Height") yield UInt8(parent, "cell_width", "Character Cell Width"... | def parseTextExtension(parent): yield UInt8(parent, "block_size", "Block Size") yield UInt16(self, "left", "Text Grid Left") yield UInt16(self, "top", "Text Grid Top") yield UInt16(self, "width", "Text Grid Width") yield UInt16(self, "height", "Text Grid Height") yield UInt8(parent, "cell_width", "Character Cell Width"... | 464,605 |
def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | 464,606 |
def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | 464,607 |
def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | 464,608 |
def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | def createFields(self): yield Enum(Bits(self, "marker_type", 4), {0: "Simple", 1: "Int", 2: "Real", 3: "Date", 4: "Data", 5: "ASCII String", 6: "UTF-16-BE String", 8: "UID", 10: "Array", 13: "Dict",}) markertype = self['marker_type'].value if markertype == 0: # Simple (Null) yield Enum(Bits(self, "value", 4), {0: "Null... | 464,609 |
def _getPath(self): if not self._parent: return '/' names = [] field = self while field: names.append(field._name) field = field._parent names[-1] = '' return '/'.join(reversed(names)) | def _getPath(self): if not self._parent: return '/' names = [] field = self while field is not None: names.append(field._name) field = field._parent names[-1] = '' return '/'.join(reversed(names)) | 464,610 |
def update_addr_view(self): addr_text = '' for i in xrange(self.view.get_height_chars()): addr_text += self.format_addr(self.pos+i*self.view.get_width_chars())+'\n' self.view.addr_view.SetValue(addr_text) | def update_addr_view(self): addr_text_list = [] for i in xrange(self.view.get_height_chars()): addr_text += self.format_addr(self.pos+i*self.view.get_width_chars())+'\n' self.view.addr_view.SetValue(addr_text) | 464,611 |
def update_addr_view(self): addr_text = '' for i in xrange(self.view.get_height_chars()): addr_text += self.format_addr(self.pos+i*self.view.get_width_chars())+'\n' self.view.addr_view.SetValue(addr_text) | def update_addr_view(self): addr_text = '' for i in xrange(self.view.get_height_chars()): addr_text += self.format_addr(self.pos+i*self.view.get_width_chars())+'\n' self.view.addr_view.SetValue(addr_text) | 464,612 |
def processVideo(self, track): video = Metadata(self) try: self.trackCommon(track, video) video.compression = track["CodecID/string"].value if "Video" in track: video.width = track["Video/PixelWidth/unsigned"].value video.height = track["Video/PixelHeight/unsigned"].value except MissingField: pass self.addGroup("video[... | def processVideo(self, track): video = Metadata(self) try: video.compression = track["CodecID/string"].value if "Video" in track: video.width = track["Video/PixelWidth/unsigned"].value video.height = track["Video/PixelHeight/unsigned"].value except MissingField: pass self.addGroup("video[]", video, "Video stream") | 464,613 |
def processAudio(self, track): audio = Metadata(self) try: self.trackCommon(track, audio) if "Audio" in track: audio.sample_rate = track["Audio/SamplingFrequency/float"].value audio.nb_channel = track["Audio/Channels/unsigned"].value audio.compression = track["CodecID/string"].value except MissingField: pass self.addGr... | def processAudio(self, track): audio = Metadata(self) self.trackCommon(track, audio) if "Audio" in track: frequency = self.getDouble(track, "Audio/SamplingFrequency") if frequency is not None: audio.sample_rate = frequency if "Audio/Channels/unsigned" in track: audio.nb_channel = track["Audio/Channels/unsigned"].value ... | 464,614 |
def processAudio(self, track): audio = Metadata(self) try: self.trackCommon(track, audio) if "Audio" in track: audio.sample_rate = track["Audio/SamplingFrequency/float"].value audio.nb_channel = track["Audio/Channels/unsigned"].value audio.compression = track["CodecID/string"].value except MissingField: pass self.addGr... | def processAudio(self, track): audio = Metadata(self) try: self.trackCommon(track, audio) if "Audio" in track: audio.sample_rate = track["Audio/SamplingFrequency/float"].value audio.nb_channel = track["Audio/Channels/unsigned"].value audio.compression = track["CodecID/string"].value self.addGroup("audio[]", audio, "Aud... | 464,615 |
def processSubtitle(self, track): sub = Metadata(self) try: self.trackCommon(track, sub) sub.compression = track["CodecID/string"].value except MissingField: pass self.addGroup("subtitle[]", sub, "Subtitle") | def processSubtitle(self, track): sub = Metadata(self) try: sub.compression = track["CodecID/string"].value except MissingField: pass self.addGroup("subtitle[]", sub, "Subtitle") | 464,616 |
def processSimpleTag(self, tag): if "TagName/unicode" not in tag \ or "TagString/unicode" not in tag: return name = tag["TagName/unicode"].value if name not in self.tag_key: return key = self.tag_key[name] value = tag["TagString/unicode"].value setattr(self, key, value) | def processSimpleTag(self, tag): if "TagName/unicode" not in tag \ or "TagString/unicode" not in tag: return name = tag["TagName/unicode"].value if name not in self.tag_key: return key = self.tag_key[name] value = tag["TagString/unicode"].value setattr(self, key, value) | 464,617 |
def processInfo(self, info): if "TimecodeScale/unsigned" in info: timecode_scale = info["TimecodeScale/unsigned"].value * 1e-9 if "Duration/float" in info: self.readDuration(info["Duration/float"].value, timecode_scale) elif "Duration/double" in info: self.readDuration(info["Duration/double"].value, timecode_scale) if ... | def processInfo(self, info): if "TimecodeScale/unsigned" in info: duration = self.getDouble(info, "Duration") if duration is not None: try: seconds = duration * info["TimecodeScale/unsigned"].value * 1e-9 self.duration = timedelta(seconds=seconds) except OverflowError: pass if "DateUTC/date" in info: try: self.creati... | 464,618 |
def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | 464,619 |
def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | 464,620 |
def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | def createFields(self): yield Bit(self, "negative") yield FloatExponent(self, "exponent", exponent_bits) if 64 <= mantissa_bits: yield Bit(self, "one") yield FloatMantissa(self, "mantissa", mantissa_bits-1) else: yield FloatMantissa(self, "mantissa", mantissa_bits) | 464,621 |
def createSectionName(self): try: name = str(self["name"].value.strip(".")) if name: return "section_%s" % name except HACHOIR_ERRORS, err: self.warning(unicode(err)) return "section[]" | def createSectionName(self): try: name = str(self["name"].value.strip(".")) if name: return "section_%s" % name except HACHOIR_ERRORS, err: self.warning(unicode(err)) return "section[]" | 464,622 |
def createFields(self): yield UInt32(self, "unk") yield AtomList(self, "tags") | def createFields(self): yield UInt32(self, "unk") yield AtomList(self, "tags") | 464,623 |
def createFields(self): yield UInt32(self, "unk") yield AtomList(self, "tags") | def createFields(self): yield UInt32(self, "unk") yield AtomList(self, "tags") | 464,624 |
def createFields(self): yield RawInt(self, 'id') yield Unsigned(self, 'size') for val in self.val[1:]: if callable(val): yield val(self) else: while not self.eof: yield EBML(self, val) | def createFields(self): yield RawInt(self, 'id') yield Unsigned(self, 'size') for val in self.val[1:]: if callable(val): yield val(self) else: while not self.eof: yield EBML(self, val) | 464,625 |
def validate(self): if self.stream.readBits(0, 32, self.endian) != self.EBML_SIGNATURE: return False try: first = self[0] except ParserError: return False if None < self._size < first._size: return False return self.stream.searchBytes('\x42\x82\x88matroska', 5*8, first._size) is not None | def validate(self): if self.stream.readBits(0, 32, self.endian) != self.EBML_SIGNATURE: return False try: first = self[0] except ParserError: return False if None < self._size < first._size: return False return self.stream.searchBytes('\x42\x82\x88matroska', 5*8, first._size) is not None | 464,626 |
def createFields(self): hdr = EBML(self, ebml) yield hdr if hdr['DocType/string'].value != 'matroska': raise ParserError("Stream isn't a matroska document.") | def createFields(self): hdr = EBML(self, ebml) yield hdr if hdr['DocType/string'].value != 'matroska': raise ParserError("Stream isn't a matroska document.") | 464,627 |
def gammaParse(parent): yield UInt32(parent, "gamma", "Gamma (x10,000)") | def gammaParse(parent): yield UInt32(parent, "gamma", "Gamma (x10,000)") | 464,628 |
def gammaValue(parent): return float(parent["gamma"].value) / 10000 | def gammaValue(parent): return float(parent["gamma"].value) / 10000 | 464,629 |
def parseRange(text, start): r""" >>> parseRange('[a]b', 1) (<RegexRange '[a]'>, 3) >>> parseRange('[a-z]b', 1) (<RegexRange '[a-z]'>, 5) >>> parseRange('[^a-z-]b', 1) (<RegexRange '[^a-z-]'>, 7) >>> parseRange('[^]-]b', 1) (<RegexRange '[^]-]'>, 5) """ index = start char_range = [] exclude = False if text[index] == '^... | def parseRange(text, start): r""" >>> parseRange('[a]b', 1) (<RegexRange '[a]'>, 3) >>> parseRange('[a-z]b', 1) (<RegexRange '[a-z]'>, 5) >>> parseRange('[^a-z-]b', 1) (<RegexRange '[^a-z-]'>, 7) >>> parseRange('[^]-]b', 1) (<RegexRange '[^]-]'>, 5) """ index = start char_range = [] exclude = False if text[index] == '^... | 464,630 |
def processInfo(self, info): if "Duration/float" in info \ and "TimecodeScale/unsigned" in info \ and 0 < info["Duration/float"].value: try: seconds = info["Duration/float"].value * info["TimecodeScale/unsigned"].value * 1e-9 self.duration = timedelta(seconds=seconds) except OverflowError: # Catch OverflowError for tim... | def processInfo(self, info): if "Duration/float" in info \ and "TimecodeScale/unsigned" in info \ and 0 < info["Duration/float"].value: try: seconds = info["Duration/float"].value * info["TimecodeScale/unsigned"].value * 1e-9 self.duration = timedelta(seconds=seconds) except OverflowError: # Catch OverflowError for tim... | 464,631 |
def main(): if "--setuptools" in argv: argv.remove("--setuptools") from setuptools import setup use_setuptools = True else: from distutils.core import setup use_setuptools = False hachoir_parser = load_source("version", path.join("hachoir_parser", "version.py")) PACKAGES = {"hachoir_parser": "hachoir_parser"} for nam... | def main(): if "--setuptools" in argv: argv.remove("--setuptools") from setuptools import setup use_setuptools = True else: from distutils.core import setup use_setuptools = False hachoir_parser = load_source("version", path.join("hachoir_parser", "version.py")) PACKAGES = {"hachoir_parser": "hachoir_parser"} for nam... | 464,632 |
def upload(self, response=None): """Upload worker function, called by the File->Upload callback. As this calls itself in the deferred callback, it takes a response argument.""" | def upload(self, response=None): """Upload worker function, called by the File->Upload callback. As this calls itself in the deferred callback, it takes a response argument.""" | 464,633 |
def upload(self, response=None): """Upload worker function, called by the File->Upload callback. As this calls itself in the deferred callback, it takes a response argument.""" | def upload(self, response=None): """Upload worker function, called by the File->Upload callback. As this calls itself in the deferred callback, it takes a response argument.""" | 464,634 |
def __init__(self, name, startup_id=None): gobject.GObject.__init__(self) self._is_running = False self._name = name self._screen = gdk.screen_get_default() | def __init__(self, name, startup_id=None): gobject.GObject.__init__(self) self._is_running = False self._name = name self._screen = gdk.screen_get_default() | 464,635 |
def openid_is_authorized(req, identity_url, trust_root): """ Check that they own the given identity URL, and that the trust_root is in their whitelist of trusted sites. """ if not req.user.is_authenticated(): return None openid = openid_get_identity(req, identity_url) if openid is None: return None import logging LOG... | def openid_is_authorized(req, identity_url, trust_root): """ Check that they own the given identity URL, and that the trust_root is in their whitelist of trusted sites. """ if not req.user.is_authenticated(): return None openid = openid_get_identity(req, identity_url) if openid is None: return None if openid.trustedr... | 464,636 |
def landing_page(request, orequest): """ The page shown when the user attempts to sign in somewhere using OpenID but is not authenticated with the site. For idproxy.net, a message telling them to log in manually is displayed. """ request.session['OPENID_REQUEST'] = orequest login_url = settings.LOGIN_URL path = request... | def landing_page(request, orequest): """ The page shown when the user attempts to sign in somewhere using OpenID but is not authenticated with the site. For idproxy.net, a message telling them to log in manually is displayed. """ request.session['OPENID_REQUEST'] = orequest login_url = settings.LOGIN_URL path = request... | 464,637 |
def _download(self): self.log = '' self.information['status'] = DownloadStatus.RUNNING if self.information['download_type'] == DownloadTypes.TORRENT: # download torrent if necessary torrent_filename = os.path.join(self._config.get('general', 'folder_new_otrkeys'), self.filename + '.torrent') if not os.path.exists(tor... | def _download(self): self.log = '' self.information['status'] = DownloadStatus.RUNNING if self.information['download_type'] == DownloadTypes.TORRENT: # download torrent if necessary torrent_filename = os.path.join(self._config.get('general', 'folder_new_otrkeys'), self.filename + '.torrent') if not os.path.exists(tor... | 464,638 |
def getdatapath(*args): """Retrieve otrverwaltung data path This path is by default <mfm_lib_path>/../data/ in trunk and /usr/share/mfm in an installed version but this path is specified at installation time. """ return os.path.join(os.path.dirname(__file__), data_dir, *args) | def getdatapath(*args): """Retrieve otrverwaltung data path This path is by default <otrverwaltung_lib_path>/../data/ in trunk and /usr/share/otrverwaltung in an installed version but this path is specified at installation time. """ return os.path.join(os.path.dirname(__file__), data_dir, *args) | 464,639 |
def _run(self, file_conclusions, action, rename_by_schema, archive_directory): self.action = action self.rename_by_schema = rename_by_schema self.__file_conclusions = file_conclusions self.forward_clicks = 0 self.show_all() self.combobox_archive.fill(archive_directory) self.combobox_archive.set_active(0) self.combobo... | def _run(self, file_conclusions, action, rename_by_schema, archive_directory): self.action = action self.rename_by_schema = rename_by_schema self.__file_conclusions = file_conclusions self.forward_clicks = 0 self.show_all() if action != Action.DECODE: self.combobox_archive.fill(archive_directory) self.combobox_archiv... | 464,640 |
def show_conclusion(self, new_iter): self.conclusion_iter = new_iter self.file_conclusion = self.__file_conclusions[self.conclusion_iter] self.builder.get_object('label_count').set_text("Zeige Datei %s/%s" % (str(new_iter + 1), len(self.__file_conclusions))) | def show_conclusion(self, new_iter): self.conclusion_iter = new_iter self.file_conclusion = self.__file_conclusions[self.conclusion_iter] self.builder.get_object('label_count').set_text("Zeige Datei %s/%s" % (str(new_iter + 1), len(self.__file_conclusions))) | 464,641 |
def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | 464,642 |
def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | 464,643 |
def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | def download_cutlists(filename, server, choose_cutlists_by, cutlist_mp4_as_hq, error_cb=None, cutlist_found_cb=None): """ Downloads all cutlists for the given file. filename - movie filename server - cutlist server choose_cutlists_by - 0 by size, 1 by name error_cb - callback: an err... | 464,644 |
def foreach(model, path, iter, data=None): index = model.get_value(iter, 0) stamp = self.app.planned_broadcasts[index].datetime | def foreach(model, path, iter, data=None): index = model.get_value(iter, 0) stamp = self.app.planned_broadcasts[index].datetime | 464,645 |
def __unicode__(self): return "%s %s" % (self.user.username, self.group) | def __unicode__(self): return "%s %s" % (self.user.username, self.group) | 464,646 |
def record(cls, goal_name, experiment_user): try: return cls._record(goal_name, experiment_user) except GoalType.DoesNotExist: raise except Exception, e: l.error("Unexpected exception in GoalRecord.record:\n" "%s" % traceback.format_exc) | def record(cls, goal_name, experiment_user): try: return cls._record(goal_name, experiment_user) except GoalType.DoesNotExist: if settings.DEBUG: raise l.warning("Can't find the GoalType named %s" % goal_name) except Exception, e: l.error("Unexpected exception in GoalRecord.record:\n" "%s" % traceback.format_exc) | 464,647 |
def testParticipantConversionCalculator(self): goal_types = [GoalType.objects.create(name=i) for i in range(3)] anonymous_visitor = AnonymousVisitor.objects.create() participant = self.create_participant( anonymous_visitor=anonymous_visitor, experiment=self.experiment, enrollment_date=self.experiment.start_date + timed... | def testParticipantConversionCalculator(self): goal_types = [GoalType.objects.create(name=str(i)) for i in range(3)] anonymous_visitor = AnonymousVisitor.objects.create() participant = self.create_participant( anonymous_visitor=anonymous_visitor, experiment=self.experiment, enrollment_date=self.experiment.start_date + ... | 464,648 |
def record(cls, goal_name, experiment_user): try: return cls._record(goal_name, experiment_user) except GoalType.DoesNotExist: if settings.DEBUG: raise l.warning("Can't find the GoalType named %s" % goal_name) except Exception, e: l.error("Unexpected exception in GoalRecord.record:\n" "%s" % traceback.format_exc) | def record(cls, goal_name, experiment_user): try: return cls._record(goal_name, experiment_user) except GoalType.DoesNotExist: if settings.DEBUG: raise l.warning("Can't find the GoalType named %s" % goal_name) except Exception, e: l.error("Unexpected exception in GoalRecord.record:\n" "%s" % traceback.format_exc) | 464,649 |
def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. From Numerical Recipies, p.483. If printit=1, results are printed to the screen. If printit='filename', the results are output to 'filename' using the given writemode (default=append). Returns t-value, and prob.... | def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. Returns t-value, and prob. Originally written by Gary Strangman. Usage: lttest_ind(a,b) Returns: t-value, two-tailed prob """ x1 = mean(a) x2 = mean(b) v1 = stdev(a)**2 v2 = stdev(b)**2 n1 = len(a) n2 = len(b) d... | 464,650 |
def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. From Numerical Recipies, p.483. If printit=1, results are printed to the screen. If printit='filename', the results are output to 'filename' using the given writemode (default=append). Returns t-value, and prob.... | def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. From Numerical Recipies, p.483. If printit=1, results are printed to the screen. If printit='filename', the results are output to 'filename' using the given writemode (default=append). Returns t-value, and prob.... | 464,651 |
def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. From Numerical Recipies, p.483. If printit=1, results are printed to the screen. If printit='filename', the results are output to 'filename' using the given writemode (default=append). Returns t-value, and prob.... | def ttest_ind(a, b): """ Calculates the t-obtained T-test on TWO INDEPENDENT samples of scores a, and b. From Numerical Recipies, p.483. If printit=1, results are printed to the screen. If printit='filename', the results are output to 'filename' using the given writemode (default=append). Returns t-value, and prob.... | 464,652 |
def git_fetch_id(): """ Fetch the GIT identifier for the local tree. Errors are swallowed. """ try: p = subprocess.Popen(['git', 'log', '-1'], stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform=='win32')) except OSError: # 'git' is apparently either not installed or not executable. return None id = No... | def git_fetch_id(): """ Fetch the GIT identifier for the local tree. Errors are swallowed. """ try: proc = subprocess.Popen(['git', 'log', '-999'], stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform=='win32')) for line in proc.stdout: match = git_re.search(line) if match: id = match.group(2) if id: pr... | 464,653 |
def git_fetch_id(): """ Fetch the GIT identifier for the local tree. Errors are swallowed. """ try: p = subprocess.Popen(['git', 'log', '-1'], stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform=='win32')) except OSError: # 'git' is apparently either not installed or not executable. return None id = No... | def git_fetch_id(): """ Fetch the GIT identifier for the local tree. Errors are swallowed. """ try: p = subprocess.Popen(['git', 'log', '-1'], stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform=='win32')) except OSError: # 'git' is apparently either not installed or not executable. pass return None | 464,654 |
def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | 464,655 |
def RewritePath(path, sysroot): """Rewrites a path by prefixing it with the sysroot if it is absolute.""" if os.path.isabs(path) and not path.startswith(sysroot): path = path.lstrip('/') return os.path.join(sysroot, path) else: return path | def RewritePath(path, opts): """Rewrites a path by stripping the prefix and prepending the sysroot.""" sysroot = opts.sysroot prefix = opts.strip_prefix if os.path.isabs(path) and not path.startswith(sysroot): path = path.lstrip('/') return os.path.join(sysroot, path) else: return path | 464,656 |
def RewriteLine(line, sysroot): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = Rewrit... | def RewriteLine(line, opts): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = RewritePa... | 464,657 |
def RewriteLine(line, sysroot): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = Rewrit... | def RewriteLine(line, sysroot): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = Rewrit... | 464,658 |
def RewriteLine(line, sysroot): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = Rewrit... | def RewriteLine(line, sysroot): """Rewrites all the paths in recognized options.""" args = line.split() count = len(args) i = 0 while i < count: for prefix in REWRITE_PREFIX: # The option can be either in the form "-I /path/to/dir" or # "-I/path/to/dir" so handle both. if args[i] == prefix: i += 1 try: args[i] = Rewrit... | 464,659 |
def main(argv): try: sysroot = argv[1] except IndexError: sys.stderr.write('usage: %s /path/to/sysroot\n' % argv[0]) return 1 for line in sys.stdin.readlines(): line = RewriteLine(line.strip(), sysroot) print line return 0 | def main(argv): parser = optparse.OptionParser() parser.add_option('-s', '--sysroot', default='/', help='sysroot to prepend') parser.add_option('-p', '--strip-prefix', default='', help='prefix to strip') opts, args = parser.parse_args(argv[1:]) for line in sys.stdin.readlines(): line = RewriteLine(line.strip(), sysroo... | 464,660 |
def main(argv): try: sysroot = argv[1] except IndexError: sys.stderr.write('usage: %s /path/to/sysroot\n' % argv[0]) return 1 for line in sys.stdin.readlines(): line = RewriteLine(line.strip(), sysroot) print line return 0 | def main(argv): try: sysroot = argv[1] except IndexError: sys.stderr.write('usage: %s /path/to/sysroot\n' % argv[0]) return 1 for line in sys.stdin.readlines(): line = RewriteLine(line.strip(), opts) print line return 0 | 464,661 |
def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | 464,662 |
def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | 464,663 |
def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | 464,664 |
def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | 464,665 |
def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | 464,666 |
def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | def TryRevision(rev, profile, args): """Downloads revision |rev|, unzips it, and opens it for the user to test. |profile| is the profile to use.""" # Do this in a temp dir so we don't collide with user files. cwd = os.getcwd() tempdir = tempfile.mkdtemp(prefix='bisect_tmp') os.chdir(tempdir) # Download the file. downl... | 464,667 |
def AskIsGoodBuild(rev): """Ask the user whether build |rev| is good or bad.""" # Loop until we get a response that we can parse. while True: response = raw_input("\nBuild %d is [(g)ood/(b)ad]: " % int(rev)) if response and response in ("g", "b"): return response == "g" | def AskIsGoodBuild(rev): """Ask the user whether build |rev| is good or bad.""" # Loop until we get a response that we can parse. while True: response = raw_input('\nBuild %d is [(g)ood/(b)ad]: ' % int(rev)) if response and response in ('g', 'b'): return response == 'g' | 464,668 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,669 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,670 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,671 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,672 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,673 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,674 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,675 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,676 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | 464,677 |
def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | def SetArchiveVars(archive): """Set a bunch of global variables appropriate for the specified archive.""" global BUILD_ARCHIVE_TYPE global BUILD_ARCHIVE_DIR global BUILD_ZIP_NAME global BUILD_DIR_NAME global BUILD_EXE_NAME global BUILD_BASE_URL BUILD_ARCHIVE_TYPE = archive BUILD_ARCHIVE_DIR = 'chromium-rel-' + BUILD_A... | 464,678 |
def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64'] parser.add_option('-a', '--archive', choices = ch... | def main(): usage = ('%prog [options] [-- chromium-options]\n' 'Perform binary search on the snapshot builds.') parser = optparse.OptionParser(usage=usage) # Strangely, the default help output doesn't include the choice list. choices = ['mac', 'xp', 'linux', 'linux-64', 'linux-chromiumos'] parser.add_option('-a', '--ar... | 464,679 |
def code_assist(self, prefix): proposals = self._calculate_proposals() if prefix is not None: arg = self.env.prefix_value(prefix) if arg == 0: arg = len(names) common_start = self._calculate_prefix(proposals[:arg]) self.env.insert(common_start[self.offset - self.starting_offset:]) self._starting = common_start self._of... | def code_assist(self, prefix): proposals = self._calculate_proposals() if prefix is not None: arg = self.env.prefix_value(prefix) if arg == 0: arg = len(proposals) common_start = self._calculate_prefix(proposals[:arg]) self.env.insert(common_start[self.offset - self.starting_offset:]) self._starting = common_start self... | 464,680 |
def _calculate_proposals(self): self.interface._check_project() resource = self.interface.resource maxfixes = self.env.get('codeassist_maxfixes') proposals = codeassist.code_assist( self.interface.project, self.source, self.offset, resource, maxfixes=maxfixes) proposals = codeassist.sorted_proposals(proposals) if self.... | def _calculate_proposals(self): self.interface._check_project() resource = self.interface.resource maxfixes = self.env.get('codeassist_maxfixes') proposals = codeassist.code_assist( self.interface.project, self.source, self.offset, resource, maxfixes=maxfixes) if self.env.get('sorted_completions', True): proposals = co... | 464,681 |
def execute(self, query, compression=None): compress = compression is None and DEFAULT_COMPRESSION \ or compression.upper() if not compress in COMPRESSION_SCHEMES: raise InvalidCompressionScheme(compress) compressed_query = Connection.compress_query(query, compress) request_params = dict(query=compressed_query, compre... | def execute(self, query, compression=None): compress = compression is None and DEFAULT_COMPRESSION \ or compression.upper() if not compress in COMPRESSION_SCHEMES: raise InvalidCompressionScheme(compress) compressed_query = Connection.compress_query(query, compress) request_params = dict(query=compressed_query, compre... | 464,682 |
def keepRowsByRowID(cls, snpData, row_id_ls): """ 2009-05-19 keep certain rows in snpData given row_id_ls """ sys.stderr.write("Keeping rows given row_id_ls ...") no_of_rows = len(row_id_ls) row_id_wanted_set = set(row_id_ls) no_of_cols = len(snpData.col_id_ls) newSnpData = SNPData(col_id_ls=copy.deepcopy(snpData.col_... | def keepRowsByRowID(cls, snpData, row_id_ls): """ 2009-05-19 keep certain rows in snpData given row_id_ls """ sys.stderr.write("Keeping rows given row_id_ls ...") no_of_rows = len(row_id_ls) row_id_wanted_set = set(row_id_ls) no_of_cols = len(snpData.col_id_ls) new_col_id_ls = copy.deepcopy(snpData.col_id_ls) new_row_... | 464,683 |
def keepRowsByRowID(cls, snpData, row_id_ls): """ 2009-05-19 keep certain rows in snpData given row_id_ls """ sys.stderr.write("Keeping rows given row_id_ls ...") no_of_rows = len(row_id_ls) row_id_wanted_set = set(row_id_ls) no_of_cols = len(snpData.col_id_ls) newSnpData = SNPData(col_id_ls=copy.deepcopy(snpData.col_... | def keepRowsByRowID(cls, snpData, row_id_ls): """ 2009-05-19 keep certain rows in snpData given row_id_ls """ sys.stderr.write("Keeping rows given row_id_ls ...") no_of_rows = len(row_id_ls) row_id_wanted_set = set(row_id_ls) no_of_cols = len(snpData.col_id_ls) newSnpData = SNPData(col_id_ls=copy.deepcopy(snpData.col_... | 464,684 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ cofactor_phenotype_id_ls=[], report=1, run_type=1,): """ 2010-1-11 add argument cofactor_phenotype_id_ls to have the functionality of treating some phenotypes as cofactors 2009-8-26 run_... | 464,685 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 one phenotype at a time: 1. create a new SNP matrix which includes accessions whose phenotypes (this phenotype + cofactor_phenotype_id_ls) are non-NA... | 464,686 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,687 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,688 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,689 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,690 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,691 |
def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | def cofactorLM(cls, genotype_fname, phenotype_fname, phenotype_method_id_ls, output_fname_prefix, start_snp, stop_snp, cofactors=[],\ report=1, run_type=1): """ 2009-8-26 run_type 1: pure linear model by python run_type 2: EMMA run_type 3: pure linear model by R (Field test shows run_type 3 is same as 1.) start_snp an... | 464,692 |
def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False, \ min_reciprocal_overlap=0.6, report=True): """ 2010-1-26 value of the e... | 464,693 |
def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | 464,694 |
def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | 464,695 |
def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | 464,696 |
def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | def compareCNVSegmentsAgainstQCHandler(cls, input_fname_ls, ecotype_id2cnv_qc_call_data, function_handler, param_obj, \ deletion_cutoff=None, max_boundary_diff=10000, \ max_diff_perc=0.10, min_no_of_probes=5, count_embedded_segment_as_match=False): """ 2009-11-4 a general handler to compare CNV segments from input_fnam... | 464,697 |
def getCNVQCDataFromDB(cls, data_source_id=1, ecotype_id=None, cnv_type_id=1, \ min_QC_segment_size=200, min_no_of_probes=None): """ 2009-11-4 get CNV QC data from database """ sys.stderr.write("Getting CNV QC data ... \n") import Stock_250kDB sql_string = "select a.ecotype_id, c.chromosome, c.start, c.stop, c.size_aff... | def getCNVQCDataFromDB(cls, data_source_id=1, ecotype_id=None, cnv_type_id=None, \ min_QC_segment_size=None, min_no_of_probes=None, min_reciprocal_overlap=0.6): """ 2010-1-26 replace the list structure of cnv_qc_call_data in ecotype_id2cnv_qc_call_data with binary_tree structure 2009-12-9 add no_of_probes_covered into ... | 464,698 |
def getCNVQCDataFromDB(cls, data_source_id=1, ecotype_id=None, cnv_type_id=1, \ min_QC_segment_size=200, min_no_of_probes=None): """ 2009-11-4 get CNV QC data from database """ sys.stderr.write("Getting CNV QC data ... \n") import Stock_250kDB sql_string = "select a.ecotype_id, c.chromosome, c.start, c.stop, c.size_aff... | def getCNVQCDataFromDB(cls, data_source_id=1, ecotype_id=None, cnv_type_id=1, \ min_QC_segment_size=200, min_no_of_probes=None): """ 2009-11-4 get CNV QC data from database """ sys.stderr.write("Getting CNV QC data ... \n") import Stock_250kDB sql_string = "select a.ecotype_id, c.chromosome, c.start, c.stop, c.size_aff... | 464,699 |
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