bugged
stringlengths 4
228k
| fixed
stringlengths 0
96.3M
| __index_level_0__
int64 0
481k
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def download_as_text(url): try: furl = urllib2.urlopen(url) s = furl.read() return s except: return None
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def download_as_text(url): try: furl = urllib2.urlopen(url) s = furl.read() return s except: return None
| 477,400
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
| 477,401
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
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defif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) check_url(url):if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) try:if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) pif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) =if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) urlparse(url)if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) hif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) =if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) HTTP(p[1])if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) h.putrequest('HEAD',if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) p[2])if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) h.endheaders()if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) ifif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) h.getreply()[0]if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) ==if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) 200:if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) returnif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) Trueif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) else:if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) returnif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) Falseif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) except:if tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) returnif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type)) Falseif tree: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s" % (host, db_name, port, vt_id, out_type)) elif wgraph: path_to_figures = os.path.join("vistrails_images", "%s_%s_%s_%s_%s_%s_graph" % (host, db_name, port, vt_id, version, out_type))
| 477,402
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
| 477,403
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
| 477,404
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
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def check_url(url): try: p = urlparse(url) h = HTTP(p[1]) h.putrequest('HEAD', p[2]) h.endheaders() if h.getreply()[0] == 200: return True else: return False except: return False
| 477,405
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def set_values(self): from core.modules.module_registry import get_module_registry reg = get_module_registry() PersistentRef = \ reg.get_descriptor_by_name('edu.utah.sci.vistrails.persistence.exp', 'PersistentRef').module
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def set_values(self): from core.modules.module_registry import get_module_registry reg = get_module_registry() PersistentRef = \ reg.get_descriptor_by_name('edu.utah.sci.vistrails.persistence', 'PersistentRef').module
| 477,406
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def get_values(self): from core.modules.module_registry import get_module_registry reg = get_module_registry() PersistentRef = \ reg.get_descriptor_by_name('edu.utah.sci.vistrails.persistence.exp', 'PersistentRef').module
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def get_values(self): from core.modules.module_registry import get_module_registry reg = get_module_registry() PersistentRef = \ reg.get_descriptor_by_name('edu.utah.sci.vistrails.persistence', 'PersistentRef').module
| 477,407
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_%s.log'%(get_version())) self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_%s.log'%(get_version())) self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
| 477,408
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_%s.log'%(get_version())) self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_%s.log'%(get_version())) self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
| 477,409
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
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def setupLogFile(self): if not self.temp_configuration.check('logFile'): s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.temp_configuration.logFile = s if not self.configuration.check('logFile'): # if this was not set before, it should point to the # value in temp_configuration s = os.path.join(self.temp_configuration.dotVistrails, 'vistrails_1_3.log') self.configuration.logFile = s if not os.path.lexists(self.temp_configuration.dotVistrails): self.create_default_directory() debug.DebugPrint.getInstance().set_logfile(self.temp_configuration.logFile)
| 477,410
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def save_vistrail_bundle_to_zip_xml(save_bundle, filename, vt_save_dir=None, version=None): """save_vistrail_bundle_to_zip_xml(save_bundle: SaveBundle, filename: str, vt_save_dir: str, version: str) -> (save_bundle: SaveBundle, vt_save_dir: str) save_bundle: a SaveBundle object containing vistrail data to save filename: filename to save to vt_save_dir: directory storing any previous files Generates a zip compressed version of vistrail. It raises an Exception if there was an error. """ core.requirements.require_executable('zip') if save_bundle.vistrail is None: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'bundle does not contain a vistrail') if not vt_save_dir: vt_save_dir = tempfile.mkdtemp(prefix='vt_save') # saving zip files flat so we'll do without this dir for now # abstraction_dir = os.path.join(vt_save_dir, 'abstractions') thumbnail_dir = os.path.join(vt_save_dir, 'thumbs') # Save Vistrail xml_fname = os.path.join(vt_save_dir, 'vistrail') save_vistrail_to_xml(save_bundle.vistrail, xml_fname, version) # Save Log if save_bundle.vistrail.db_log_filename is not None: xml_fname = os.path.join(vt_save_dir, 'log') if save_bundle.vistrail.db_log_filename != xml_fname: shutil.copyfile(save_bundle.vistrail.db_log_filename, xml_fname) save_bundle.vistrail.db_log_filename = xml_fname if save_bundle.log is not None: xml_fname = os.path.join(vt_save_dir, 'log') save_log_to_xml(save_bundle.log, xml_fname, version, True) save_bundle.vistrail.db_log_filename = xml_fname # Save Abstractions saved_abstractions = [] for obj in save_bundle.abstractions: if type(obj) == type(""): # FIXME we should have an abstraction directory here instead # of the abstraction_ prefix... if not os.path.basename(obj).startswith('abstraction_'): obj_fname = 'abstraction_' + os.path.basename(obj) else: obj_fname = os.path.basename(obj) # xml_fname = os.path.join(abstraction_dir, obj_fname) xml_fname = os.path.join(vt_save_dir, obj_fname) saved_abstractions.append(xml_fname) # if not os.path.exists(abstraction_dir): # os.mkdir(abstraction_dir) # print "obj:", obj # print "xml_fname:", xml_fname if obj != xml_fname: # print 'copying %s -> %s' % (obj, xml_fname) try: shutil.copyfile(obj, xml_fname) except Exception, e: saved_abstractions.pop() debug.critical('copying %s -> %s failed: %s' % \ (obj, xml_fname, str(e))) else: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'abstraction list entry must be a filename') # Save Thumbnails saved_thumbnails = [] for obj in save_bundle.thumbnails: if type(obj) == type(""): obj_fname = os.path.basename(obj) png_fname = os.path.join(thumbnail_dir, obj_fname) saved_thumbnails.append(png_fname) if not os.path.exists(thumbnail_dir): os.mkdir(thumbnail_dir) #print 'copying %s -> %s' %(obj, png_fname) try: shutil.copyfile(obj, png_fname) except Exception, e: saved_thumbnails.pop() debug.warning('copying thumbnail %s -> %s failed: %s' % \ (obj, png_fname, str(e))) else: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'thumbnail list entry must be a filename') tmp_zip_dir = tempfile.mkdtemp(prefix='vt_zip') tmp_zip_file = os.path.join(tmp_zip_dir, "vt.zip") output = [] rel_vt_save_dir = os.path.split(vt_save_dir)[1] # on windows, we assume zip.exe is in the current directory when # running from the binary install zipcmd = 'zip' if systemType in ['Windows', 'Microsoft']: zipcmd = os.path.join(cur_dir,'zip.exe') if not os.path.exists(zipcmd): zipcmd = 'zip.exe' #assume zip is in path cmdline = [zipcmd, '-r', '-q', tmp_zip_file, '.'] try: #if we want that directories are also stored in the zip file # we need to run from the vt directory with Chdir(vt_save_dir): result = execute_cmdline(cmdline,output) #print result, output if result != 0 or len(output) != 0: for line in output: if line.find('deflated') == -1: raise VistrailsDBException(" ".join(output)) shutil.copyfile(tmp_zip_file, filename) finally: os.unlink(tmp_zip_file) os.rmdir(tmp_zip_dir) save_bundle = SaveBundle(save_bundle.bundle_type, save_bundle.vistrail, save_bundle.log, thumbnails=saved_thumbnails, abstractions=saved_abstractions) return (save_bundle, vt_save_dir)
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def save_vistrail_bundle_to_zip_xml(save_bundle, filename, vt_save_dir=None, version=None): """save_vistrail_bundle_to_zip_xml(save_bundle: SaveBundle, filename: str, vt_save_dir: str, version: str) -> (save_bundle: SaveBundle, vt_save_dir: str) save_bundle: a SaveBundle object containing vistrail data to save filename: filename to save to vt_save_dir: directory storing any previous files Generates a zip compressed version of vistrail. It raises an Exception if there was an error. """ core.requirements.require_executable('zip') if save_bundle.vistrail is None: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'bundle does not contain a vistrail') if not vt_save_dir: vt_save_dir = tempfile.mkdtemp(prefix='vt_save') # saving zip files flat so we'll do without this dir for now # abstraction_dir = os.path.join(vt_save_dir, 'abstractions') thumbnail_dir = os.path.join(vt_save_dir, 'thumbs') # Save Vistrail xml_fname = os.path.join(vt_save_dir, 'vistrail') save_vistrail_to_xml(save_bundle.vistrail, xml_fname, version) # Save Log if save_bundle.vistrail.db_log_filename is not None: xml_fname = os.path.join(vt_save_dir, 'log') if save_bundle.vistrail.db_log_filename != xml_fname: shutil.copyfile(save_bundle.vistrail.db_log_filename, xml_fname) save_bundle.vistrail.db_log_filename = xml_fname if save_bundle.log is not None: xml_fname = os.path.join(vt_save_dir, 'log') save_log_to_xml(save_bundle.log, xml_fname, version, True) save_bundle.vistrail.db_log_filename = xml_fname # Save Abstractions saved_abstractions = [] for obj in save_bundle.abstractions: if type(obj) == type(""): # FIXME we should have an abstraction directory here instead # of the abstraction_ prefix... if not os.path.basename(obj).startswith('abstraction_'): obj_fname = 'abstraction_' + os.path.basename(obj) else: obj_fname = os.path.basename(obj) # xml_fname = os.path.join(abstraction_dir, obj_fname) xml_fname = os.path.join(vt_save_dir, obj_fname) saved_abstractions.append(xml_fname) # if not os.path.exists(abstraction_dir): # os.mkdir(abstraction_dir) # print "obj:", obj # print "xml_fname:", xml_fname if obj != xml_fname: # print 'copying %s -> %s' % (obj, xml_fname) try: shutil.copyfile(obj, xml_fname) except Exception, e: saved_abstractions.pop() debug.critical('copying %s -> %s failed: %s' % \ (obj, xml_fname, str(e))) else: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'abstraction list entry must be a filename') # Save Thumbnails saved_thumbnails = [] for obj in save_bundle.thumbnails: if type(obj) == type(""): obj_fname = os.path.basename(obj) png_fname = os.path.join(thumbnail_dir, obj_fname) saved_thumbnails.append(png_fname) if not os.path.exists(thumbnail_dir): os.mkdir(thumbnail_dir) #print 'copying %s -> %s' %(obj, png_fname) try: shutil.copyfile(obj, png_fname) except Exception, e: saved_thumbnails.pop() debug.warning('copying thumbnail %s -> %s failed: %s' % \ (obj, png_fname, str(e))) else: raise VistrailsDBException('save_vistrail_bundle_to_zip_xml failed, ' 'thumbnail list entry must be a filename') tmp_zip_dir = tempfile.mkdtemp(prefix='vt_zip') tmp_zip_file = os.path.join(tmp_zip_dir, "vt.zip") output = [] rel_vt_save_dir = os.path.split(vt_save_dir)[1] # on windows, we assume zip.exe is in the current directory when # running from the binary install zipcmd = 'zip' if systemType in ['Windows', 'Microsoft']: zipcmd = os.path.join(os.getcwd(),'zip.exe') if not os.path.exists(zipcmd): zipcmd = 'zip.exe' #assume zip is in path cmdline = [zipcmd, '-r', '-q', tmp_zip_file, '.'] try: #if we want that directories are also stored in the zip file # we need to run from the vt directory with Chdir(vt_save_dir): result = execute_cmdline(cmdline,output) #print result, output if result != 0 or len(output) != 0: for line in output: if line.find('deflated') == -1: raise VistrailsDBException(" ".join(output)) shutil.copyfile(tmp_zip_file, filename) finally: os.unlink(tmp_zip_file) os.rmdir(tmp_zip_dir) save_bundle = SaveBundle(save_bundle.bundle_type, save_bundle.vistrail, save_bundle.log, thumbnails=saved_thumbnails, abstractions=saved_abstractions) return (save_bundle, vt_save_dir)
| 477,411
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def merge_vt(self, host, port, db_name, user, new_vt_filepath, old_db_vt_id, is_local=True): """ Merge new_vt (new_vt_filepath) with current vt (old_db_vt_id)
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def merge_vt(self, host, port, db_name, user, new_vt_filepath, old_db_vt_id, is_local=True): """ Merge new_vt (new_vt_filepath) with current vt (old_db_vt_id)
| 477,412
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
| 477,413
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) get_vt_graph_png(self, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) host, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) port, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) db_name, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) vt_id, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) is_local=True): def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) """get_vt_graph_png(host:str, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) port: def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) str, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) db_name: def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) str, def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) vt_id:str) def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) -> def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) str def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) Returns def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) the def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) relative def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) url def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) of def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) the def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) generated def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) image def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """ self.server_logger.info("get_vt_graph_pdf(%s, %s, %s, %s)" % (host, port, db_name, vt_id)) try: vt_id = long(vt_id) subdir = 'vistrails' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s.pdf" % (vt_id) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_vt_graph_pdf(host, port, db_name, vt_id, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) if not os.path.exists(filepath): os.mkdir(filepath) if not os.path.exists(filename): locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=vt_id, obj_type=None, connection_id=None) (v, abstractions , thumbnails) = io.load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) from gui.version_view import QVersionTreeView version_view = QVersionTreeView() version_view.scene().setupScene(controller) version_view.scene().saveToPDF(filename) del version_view else: self.server_logger.info("Found cached pdf: %s" % filename) if is_local: return (os.path.join(subdir,base_fname), 1) else: f = open(filename, 'rb') contents = f.read() f.close() return (xmlrpclib.Binary(contents), 1) except Exception, e: self.server_logger.error("Error when saving pdf: %s" % str(e)) return (str(e), 0) """
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type) all_ports = reg.all_source_ports(d) # print "pspec", pspec # First try to find a perfect match for (klass_name, ports) in all_ports: for candidate_port in ports: if (candidate_port.type_equals(pspec) and candidate_port.name == port.name): #print "found perfect match" port.spec = candidate_port port.find_port_types() return True # Now try to find an imperfect one for (klass_name, ports) in all_ports: for candidate_port in ports: print candidate_port if candidate_port.type_equals(pspec): #print "found imperfect match" port.name = candidate_port.name port.spec = candidate_port port.find_port_types() return True return False
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type) all_ports = reg.all_source_ports(d) # print "pspec", pspec # First try to find a perfect match for (klass_name, ports) in all_ports: for candidate_port in ports: if (candidate_port.type_equals(pspec) and candidate_port.name == port.name): #print "found perfect match" port.spec = candidate_port return True # Now try to find an imperfect one for (klass_name, ports) in all_ports: for candidate_port in ports: print candidate_port if candidate_port.type_equals(pspec): #print "found imperfect match" port.name = candidate_port.name port.spec = candidate_port return True return False
| 477,416
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type) all_ports = reg.all_source_ports(d) # print "pspec", pspec # First try to find a perfect match for (klass_name, ports) in all_ports: for candidate_port in ports: if (candidate_port.type_equals(pspec) and candidate_port.name == port.name): #print "found perfect match" port.spec = candidate_port port.find_port_types() return True # Now try to find an imperfect one for (klass_name, ports) in all_ports: for candidate_port in ports: print candidate_port if candidate_port.type_equals(pspec): #print "found imperfect match" port.name = candidate_port.name port.spec = candidate_port port.find_port_types() return True return False
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type) all_ports = reg.all_source_ports(d) # print "pspec", pspec # First try to find a perfect match for (klass_name, ports) in all_ports: for candidate_port in ports: if (candidate_port.type_equals(pspec) and candidate_port.name == port.name): #print "found perfect match" port.spec = candidate_port return True # Now try to find an imperfect one for (klass_name, ports) in all_ports: for candidate_port in ports: print candidate_port if candidate_port.type_equals(pspec): #print "found imperfect match" port.name = candidate_port.name port.spec = candidate_port return True return False
| 477,417
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type)
|
def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type)
| 477,418
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def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type)
|
def remap(): port_type = \ PortSpec.port_type_map.inverse[port.type] pspec = reg.get_port_spec(m.package, m.name, m.namespace, port.name, port_type)
| 477,419
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def __init__(self, msg, module=None, port_name=None, port_type=None): Exception.__init__(self, msg) self._msg = msg self._module = module self._port_name = port_name self._port_type = port_type.lower()
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def __init__(self, msg, module=None, port_name=None, port_type=None): Exception.__init__(self, msg) self._msg = msg self._module = module self._port_name = port_name self._port_type = port_type.lower() if port_type else None
| 477,420
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='', build_always=False, parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
| 477,421
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
| 477,422
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
| 477,423
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
| 477,424
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters=''): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters))
|
def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters=''): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters))
| 477,425
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def get_wf_datasets(self, host, port, db_name, vt_id, version): self.server_logger.info("Request: get_wf_datasets(%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, version)) try: locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=int(vt_id), obj_type=None, connection_id=None)
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def get_wf_datasets(self, host, port, db_name, vt_id, version): self.server_logger.info("Request: get_wf_datasets(%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, version)) try: locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=int(vt_id), obj_type=None, connection_id=None)
| 477,426
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def index_workflow(self, host, port, db_name, vt_id, wf_info): self.server_logger.info("Request: index_workflow(%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, wf_info)) try: locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=int(vt_id), obj_type=None, connection_id=None)
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def index_workflow(self, host, port, db_name, vt_id, wf_info): self.server_logger.info("Request: index_workflow(%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, wf_info)) try: locator = DBLocator(host=host, port=int(port), database=db_name, user=db_read_user, passwd=db_read_pass, obj_id=int(vt_id), obj_type=None, connection_id=None)
| 477,427
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def __str__(self): return "Pipeline cannot be instantiated:\n " + \ '\n '.join(str(e) for e in self._exception_set)
|
def __str__(self): return "Pipeline cannot be instantiated:\n " + \ '\n '.join(str(e) for e in self._exception_set)
| 477,428
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def versions_increasing(v1, v2): v1_list = v1.split('.') v2_list = v2.split('.') try: while len(v1_list) > 0 and len(v2_list) > 0: v1_num = int(v1_list.pop()) v2_num = int(v2_list.pop()) if v1_num < v2_num: return True elif v1_num > v2_num: return False if len(v1_list) < len(v2_list): return True elif len(v1_list) > len(v2_list): return False except ValueError: print "ERROR: cannot compare versions whose components " \ "are not integers" return True
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def versions_increasing(v1, v2): v1_list = v1.split('.') v2_list = v2.split('.') try: while len(v1_list) > 0 and len(v2_list) > 0: v1_num = int(v1_list.pop()) v2_num = int(v2_list.pop()) if v1_num < v2_num: return False elif v1_num > v2_num: return False if len(v1_list) < len(v2_list): return False elif len(v1_list) > len(v2_list): return False except ValueError: print "ERROR: cannot compare versions whose components " \ "are not integers" return False
| 477,429
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def current_ip(): """ current_ip() -> str Gets current IP address trying to avoid the IPv6 interface """ info = socket.getaddrinfo(socket.gethostname(), None) for i in info: if len(i[4][0]) <= 15: return i[4][0] else: return '0.0.0.0'
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def current_ip(): """ current_ip() -> str Gets current IP address trying to avoid the IPv6 interface """ try: info = socket.getaddrinfo(socket.gethostname(), None) for i in info: if len(i[4][0]) <= 15: return i[4][0] else: return '0.0.0.0' except: return '0.0.0.0'
| 477,430
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def load(self, type, tmp_dir=None): self._hash = self.hash() if DBLocator.cache.has_key(self._hash): save_bundle = DBLocator.cache[self._hash] obj = save_bundle.get_primary_obj() ts = io.get_db_object_modification_time(self.get_connection(), obj.db_id, obj.vtType) ts = datetime(*strptime(str(ts).strip(), '%Y-%m-%d %H:%M:%S')[0:6]) #print DBLocator.cache_timestamps[self._hash],ts if DBLocator.cache_timestamps[self._hash] == ts: # If thumbnail cache was cleared, get thumbs from db if tmp_dir is not None: for absfname in save_bundle.thumbnails: if not os.path.isfile(absfname): save_bundle.thumbnails = io.open_thumbnails_from_db(self.get_connection(), type, self.obj_id, tmp_dir) break return save_bundle connection = self.get_connection() save_bundle = io.open_bundle_from_db(type, connection, self.obj_id, tmp_dir) primary_obj = save_bundle.get_primary_obj() self._name = primary_obj.db_name for obj in save_bundle.get_db_objs(): obj.locator = self #The problem of computing the hash again is that will always be #different from what the locator is created because we don't know #the name of the locator before it is loaded. So we will use the #one that was created before loading the vistrail #_hash = self.hash() DBLocator.cache[self._hash] = save_bundle.do_copy() DBLocator.cache_timestamps[self._hash] = primary_obj.db_last_modified return save_bundle
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def load(self, type, tmp_dir=None): self._hash = self.hash() if DBLocator.cache.has_key(self._hash): save_bundle = DBLocator.cache[self._hash] obj = save_bundle.get_primary_obj() ts = io.get_db_object_modification_time(self.get_connection(), obj.db_id, obj.vtType) ts = datetime(*strptime(str(ts).strip(), '%Y-%m-%d %H:%M:%S')[0:6]) #print DBLocator.cache_timestamps[self._hash],ts if DBLocator.cache_timestamps[self._hash] == ts: # If thumbnail cache was cleared, get thumbs from db if tmp_dir is not None: for absfname in save_bundle.thumbnails: if not os.path.isfile(absfname): save_bundle.thumbnails = io.open_thumbnails_from_db(self.get_connection(), type, self.obj_id, tmp_dir) break return save_bundle connection = self.get_connection() save_bundle = io.open_bundle_from_db(type, connection, self.obj_id, tmp_dir) primary_obj = save_bundle.get_primary_obj() self._name = primary_obj.db_name for obj in save_bundle.get_db_objs(): obj.locator = self #The problem of computing the hash again is that will always be #different from what the locator is created because we don't know #the name of the locator before it is loaded. So we will use the #one that was created before loading the vistrail #_hash = self.hash() DBLocator.cache[self._hash] = save_bundle.do_copy() DBLocator.cache_timestamps[self._hash] = primary_obj.db_last_modified return save_bundle
| 477,431
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def save(self, save_bundle, do_copy=False, version=None): connection = self.get_connection() for obj in save_bundle.get_db_objs(): obj.db_name = self._name save_bundle = io.save_bundle_to_db(save_bundle, connection, do_copy, version) primary_obj = save_bundle.get_primary_obj() self._obj_id = primary_obj.db_id self._obj_type = primary_obj.vtType for obj in save_bundle.get_db_objs(): obj.locator = self #update the cache with a copy of the new bundle if self._hash != '': self_hash = self.hash() DBLocator.cache[self._hash] = save_bundle.do_copy() DBLocator.cache_timestamps[self._hash] = primary_obj.db_last_modified return save_bundle
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def save(self, save_bundle, do_copy=False, version=None): connection = self.get_connection() for obj in save_bundle.get_db_objs(): obj.db_name = self._name save_bundle = io.save_bundle_to_db(save_bundle, connection, do_copy, version) primary_obj = save_bundle.get_primary_obj() self._obj_id = primary_obj.db_id self._obj_type = primary_obj.vtType for obj in save_bundle.get_db_objs(): obj.locator = self #update the cache with a copy of the new bundle self_hash = self.hash() DBLocator.cache[self._hash] = save_bundle.do_copy() DBLocator.cache_timestamps[self._hash] = primary_obj.db_last_modified return save_bundle
| 477,432
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def to_xml(self, node=None): """to_xml(node: ElementTree.Element) -> ElementTree.Element Convert this object to an XML representation. """ if node is None: node = ElementTree.Element('locator')
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def to_xml(self, node=None): """to_xml(node: ElementTree.Element) -> ElementTree.Element Convert this object to an XML representation. """ if node is None: node = ElementTree.Element('locator')
| 477,433
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def bool_conv(x): s = str(x).upper() if s == 'TRUE': return True if s == 'FALSE': return False
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def bool_conv(x): s = str(x).upper() if s == 'TRUE': return True if s == 'FALSE': return False
| 477,434
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,435
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,436
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def check_dependencies(self): """ determines if current VisTrail will be supported by the repository's VisTrail server """
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def check_dependencies(self): """ determines if current VisTrail will be supported by the repository's VisTrail server """
| 477,437
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def check_dependencies(self): """ determines if current VisTrail will be supported by the repository's VisTrail server """
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defcheck_dependencies(self):"""determinesifcurrentVisTrailwillbesupportedbytherepository'sVisTrailserver"""
| 477,438
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def check_dependencies(self): """ determines if current VisTrail will be supported by the repository's VisTrail server """
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def check_dependencies(self): """ determines if current VisTrail will be supported by the repository's VisTrail server """
| 477,439
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,440
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
|
def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,441
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
|
def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,442
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
|
def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,443
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def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
|
def __init__(self, parent, status_bar, dialog): QtGui.QWidget.__init__(self, parent) self._status_bar = status_bar self.dialog = dialog
| 477,444
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
| 477,445
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
| 477,446
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
| 477,447
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
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def clicked_on_login(self): """ Attempts to log into web repository stores auth cookie for session """ from gui.application import VistrailsApplication
| 477,448
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def clicked_on_logout(self): """ Reset cookie, text fields and gui buttons """ self.loginUser.setEnabled(True) self.loginPassword.setEnabled(True) self._logout_button.setEnabled(False) self._login_button.setEnabled(True) self.saveLogin.setEnabled(True) self.dialog.cookiejar = None
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def clicked_on_logout(self): """ Reset cookie, text fields and gui buttons """ self.dialog.loginUser.setEnabled(True) self.loginPassword.setEnabled(True) self._logout_button.setEnabled(False) self._login_button.setEnabled(True) self.saveLogin.setEnabled(True) self.dialog.cookiejar = None
| 477,449
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def run_and_get_results(w_list, parameters='', workflow_info=None, update_vistrail=False, extra_info=None): """run_and_get_results(w_list: list of (locator, version), parameters: str, workflow_info:str, update_vistrail: boolean) Run all workflows in w_list, and returns an interpreter result object. version can be a tag name or a version id. """ elements = parameters.split("&") aliases = {} result = [] for locator, workflow in w_list: (v, abstractions , thumbnails) = load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) if type(workflow) == type("str"): version = v.get_version_number(workflow) elif type(workflow) in [ type(1), long]: version = workflow elif workflow is None: version = controller.get_latest_version_in_graph() else: msg = "Invalid version tag or number: %s" % workflow raise VistrailsInternalError(msg) controller.change_selected_version(version) for e in elements: pos = e.find("=") if pos != -1: key = e[:pos].strip() value = e[pos+1:].strip() if controller.current_pipeline.has_alias(key): aliases[key] = value if workflow_info is not None and controller.current_pipeline is not None: from gui.pipeline_view import QPipelineView pipeline_view = QPipelineView() pipeline_view.scene().setupScene(controller.current_pipeline) base_fname = "%s_%s_pipeline.pdf" % (locator.short_name, version) filename = os.path.join(workflow_info, base_fname) pipeline_view.scene().saveToPDF(filename) del pipeline_view base_fname = "%s_%s_pipeline.xml" % (locator.short_name, version) filename = os.path.join(workflow_info, base_fname) core.db.io.save_workflow(controller.current_pipeline, filename) if not update_vistrail: conf = get_vistrails_configuration() if conf.has('thumbs'): conf.thumbs.autoSave = False (results, _) = controller.execute_current_workflow(aliases, extra_info) run = results[0] run.workflow_info = (locator.name, version) run.pipeline = controller.current_pipeline #not sure if you need to add the abstractions back #but just to be safe if update_vistrail: controller.write_vistrail(locator) result.append(run) return result
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def run_and_get_results(w_list, parameters='', workflow_info=None, update_vistrail=False, extra_info=None): """run_and_get_results(w_list: list of (locator, version), parameters: str, workflow_info:str, update_vistrail: boolean) Run all workflows in w_list, and returns an interpreter result object. version can be a tag name or a version id. """ elements = parameters.split("&&") aliases = {} result = [] for locator, workflow in w_list: (v, abstractions , thumbnails) = load_vistrail(locator) controller = VistrailController() controller.set_vistrail(v, locator, abstractions, thumbnails) if type(workflow) == type("str"): version = v.get_version_number(workflow) elif type(workflow) in [ type(1), long]: version = workflow elif workflow is None: version = controller.get_latest_version_in_graph() else: msg = "Invalid version tag or number: %s" % workflow raise VistrailsInternalError(msg) controller.change_selected_version(version) for e in elements: pos = e.find("=") if pos != -1: key = e[:pos].strip() value = e[pos+1:].strip() if controller.current_pipeline.has_alias(key): aliases[key] = value if workflow_info is not None and controller.current_pipeline is not None: from gui.pipeline_view import QPipelineView pipeline_view = QPipelineView() pipeline_view.scene().setupScene(controller.current_pipeline) base_fname = "%s_%s_pipeline.pdf" % (locator.short_name, version) filename = os.path.join(workflow_info, base_fname) pipeline_view.scene().saveToPDF(filename) del pipeline_view base_fname = "%s_%s_pipeline.xml" % (locator.short_name, version) filename = os.path.join(workflow_info, base_fname) core.db.io.save_workflow(controller.current_pipeline, filename) if not update_vistrail: conf = get_vistrails_configuration() if conf.has('thumbs'): conf.thumbs.autoSave = False (results, _) = controller.execute_current_workflow(aliases, extra_info) run = results[0] run.workflow_info = (locator.name, version) run.pipeline = controller.current_pipeline #not sure if you need to add the abstractions back #but just to be safe if update_vistrail: controller.write_vistrail(locator) result.append(run) return result
| 477,450
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def __init__(self, parent = None): QtGui.QDialog.__init__(self, parent) core.debug.DebugPrint.getInstance().set_stream(debugStream(self.write)) self.setWindowTitle('VisTrails Messages') layout = QtGui.QVBoxLayout() self.setLayout(layout)
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def toggleType(self, s, visible): if visible == QtCore.Qt.Unchecked: visible = False elif visible == QtCore.Qt.Checked: visible == True for item in [self.list.item(i) for i in xrange(self.list.count())]: if str(item.data(32).toString()).split('\n')[0] == s: self.list.setItemHidden(item, not visible)
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def toggleType(self, s, visible): if visible == QtCore.Qt.Unchecked: visible = False elif visible == QtCore.Qt.Checked: visible = True for item in [self.list.item(i) for i in xrange(self.list.count())]: if str(item.data(32).toString()).split('\n')[0] == s: self.list.setItemHidden(item, not visible)
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pattern = re.compile(r"(^\s*?def vistrails_revision\(\):.*?release = ['\"])([0-9]+?)(['\"].*?return release)", re.DOTALL | re.MULTILINE)
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pattern = re.compile(r"(^\s*?def vistrails_revision\(\):.*?release = ['\"])([0-9]+?)(['\"].*?return release)", re.DOTALL | re.MULTILINE)
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pattern = re.compile(r"(^\s*?def vistrails_revision\(\):.*?release = ['\"])([0-9]+?)(['\"].*?return release)", re.DOTALL | re.MULTILINE)
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pattern = re.compile(r"(^\s*?def vistrails_revision\(\):.*?release = ['\"])([0-9]+?)(['\"].*?return release)", re.DOTALL | re.MULTILINE)
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def parse_db_type(self): if self.db_type and self.db_type.find(':') != -1: (self._identifier, name) = self.db_type.split(':', 1) if name.find('|') != -1: (self._namespace, self._type) = name.rsplit('|', 1) else: self._namespace = None self._type = name else: # FIXME don't hardcode this self._identifier = "edu.utah.sci.vistrails.basic" self._namespace = None self._type = self.db_type
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def parse_db_type(self): if self.db_type: k = self.db_type.split(':', 2) else: k = [] if len(k) < 2: # FIXME don't hardcode this self._identifier = "edu.utah.sci.vistrails.basic" self._namespace = None self._type = self.db_type
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def update_db_type(self): if not self._type: self.db_type = None else: if not self._identifier: # FIXME don't hardcode this self._identifier = "edu.utah.sci.vistrails.basic" if self._namespace: self.db_type = self._identifier + ':' + self._namespace + \ '|' + self._type else: self.db_type = self._identifier + ':' + self._type
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def update_db_type(self): if not self._type: self.db_type = None else: if not self._identifier: # FIXME don't hardcode this self._identifier = "edu.utah.sci.vistrails.basic" if self._namespace: self.db_type = self._identifier + ':' + self._namespace + \ '|' + self._type else: self.db_type = self._identifier + ':' + self._type
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def _download_content(url, request, path_to_figures): """_download_images(url:string, request:string, path_to_figures:string) -> (Boolean, message) Downloads all images and pdf files listed in url and saves them to path_to_figures """ website = url url = request try: page = download_as_text(url) # we will look for images and other files embedded in the html re_imgs = re.compile('<img[^>]*/>') re_src = re.compile('(.*src=")([^"]*)"') re_a = re.compile('<a[^>]*>[^<]*</a>') re_href = re.compile('(.*href=")([^"]*)"') images = re_imgs.findall(page) files = re_a.findall(page) failed = False msg = '' if len(images) > 0 or len(files) > 0: for i in images: pngfile = re_src.match(i).groups()[1] if not check_url(pngfile): img = website + pngfile else: img = pngfile if not download(img, os.path.join(path_to_figures, os.path.basename(img))): msg += "Error when downloading image: %s. <return>" %img failed = True for f in files: otherfile = re_href.match(f).groups()[1] if not check_url(otherfile): filename = website + otherfile else: filename = otherfile if not download(filename, os.path.join(path_to_figures, os.path.basename(filename))): msg += "Error when downloading file: %s. <return>"%filename failed = True if not failed : return (True, "") else: return (False, msg) else: msg = "Web server returned: %s" % page return (False, msg) except Exception, e: return (False, str(e))
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def _download_content(url, request, path_to_figures): """_download_images(url:string, request:string, path_to_figures:string) -> (Boolean, message) Downloads all images and pdf files listed in url and saves them to path_to_figures """ website = url url = request try: page = download_as_text(url) # we will look for images and other files embedded in the html re_imgs = re.compile('<img[^>]*/>') re_src = re.compile('(.*src=")([^"]*)"') re_a = re.compile('<a[^>]*>[^<]*</a>') re_href = re.compile('(.*href=")([^"]*)"') images = re_imgs.findall(page) files = re_a.findall(page) failed = False msg = '' if len(images) > 0 or len(files) > 0: for i in images: pngfile = re_src.match(i).groups()[1] if not check_url(pngfile): img = website + pngfile else: img = pngfile if not download(img, os.path.join(path_to_figures, os.path.basename(img))): msg += "Error when downloading image: %s. <return>" %img failed = True for f in files: otherfile = re_href.match(f).groups()[1] if not check_url(otherfile): filename = website + otherfile else: filename = otherfile if not download(filename, os.path.join(path_to_figures, os.path.basename(filename))): msg += "Error when downloading file: %s. <return>"%filename failed = True if not failed : return (True, "") else: return (False, msg) else: msg = "url: '%s' \n returned: %s" % (url,page.strip()) return (False, msg) except Exception, e: return (False, str(e))
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def generate_latex_error(error_msg): """ generate_latex_error(error_msg: str) -> str this generates a piece of latex code with an error message. """ s = """\\PackageError{vistrails}{ An error occurred when executing vistrails. \\MessageBreak
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def generate_latex_error(error_msg): """ generate_latex_error(error_msg: str) -> str this generates a piece of latex code with an error message. """ s = """\\PackageError{vistrails}{ An error occurred when executing vistrails. \\MessageBreak
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def _parse_vtinfo(self, info, use_filename=True): name = None version = None if use_filename and os.path.isfile(info): name = info else: data = info.split(":") if len(data) >= 2: if use_filename and os.path.isfile(str(data[0])): name = str(data[0]) elif not use_filename: name = str(data[0]) # will try to convert version to int # if it fails, it's a tag name try: #maybe a tag name contains ':' in its name #so we need to bring it back together rest = ":".join(data[1:]) version = int(rest) except ValueError: version = str(rest) elif len(data) == 1: if use_filename and os.path.isfile(str(data[0])): name = str(data[0]) elif not use_filename: name = str(data[0]) return (name, version)
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def _parse_vtinfo(self, info, use_filename=True): name = None version = None if use_filename and os.path.isfile(info): name = info else: data = info.split(":") if len(data) >= 2: if use_filename: if os.path.isfile(str(data[0])): name = str(data[0]) elif not use_filename: name = str(data[0]) # will try to convert version to int # if it fails, it's a tag name try: #maybe a tag name contains ':' in its name #so we need to bring it back together rest = ":".join(data[1:]) version = int(rest) except ValueError: version = str(rest) elif len(data) == 1: if use_filename: if os.path.isfile(str(data[0])): name = str(data[0]) elif not use_filename: name = str(data[0]) return (name, version)
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def http_error_default(self, url, fp, errcode, errmsg, headers): if errcode == 404: raise IOError, ('http error', errcode, errmsg, headers) # call parent method urllib.FancyURLopener().http_error_default(url, fp, errcode, errmsg, headers)
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def http_error_default(self, url, fp, errcode, errmsg, headers): if errcode == 404: raise IOError, ('http error', errcode, errmsg, headers) # call parent method urllib.FancyURLopener().http_error_default(url, fp, errcode, errmsg, headers)
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def is_cacheable(self): self.checkInputPort('url') url = self.getInputFromPort('url') local_filename = self._local_filename(url) # If file is not in cache, then we must re-run if not self._file_is_in_local_cache(local_filename): return False conn = httplib.HTTPConnection(self.host) try: conn.request("GET", self.filename) except socket.gaierror, e: # We could not get to the net, but file exists in local # cache, so we'll simply reuse it return True response = conn.getresponse() mod_header = response.msg.getheader('last-modified') if not mod_header: # server did not return a last-modified, assume cannot cache return False if self._is_outdated(mod_header, local_filename): return False return True
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def is_cacheable(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) local_filename = self._local_filename(url) # If file is not in cache, then we must re-run if not self._file_is_in_local_cache(local_filename): return False conn = httplib.HTTPConnection(self.host) try: conn.request("GET", self.filename) except socket.gaierror, e: # We could not get to the net, but file exists in local # cache, so we'll simply reuse it return True response = conn.getresponse() mod_header = response.msg.getheader('last-modified') if not mod_header: # server did not return a last-modified, assume cannot cache return False if self._is_outdated(mod_header, local_filename): return False return True
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def is_cacheable(self): self.checkInputPort('url') url = self.getInputFromPort('url') local_filename = self._local_filename(url) # If file is not in cache, then we must re-run if not self._file_is_in_local_cache(local_filename): return False conn = httplib.HTTPConnection(self.host) try: conn.request("GET", self.filename) except socket.gaierror, e: # We could not get to the net, but file exists in local # cache, so we'll simply reuse it return True response = conn.getresponse() mod_header = response.msg.getheader('last-modified') if not mod_header: # server did not return a last-modified, assume cannot cache return False if self._is_outdated(mod_header, local_filename): return False return True
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def is_cacheable(self): self.checkInputPort('url') url = self.getInputFromPort('url') local_filename = self._local_filename(url) # If file is not in cache, then we must re-run if not self._file_is_in_local_cache(local_filename): return False conn = httplib.HTTPConnection(self.host) try: conn.request("GET", self.filename) except socket.gaierror, e: # We could not get to the net, but file exists in local # cache, so we'll simply reuse it return True response = conn.getresponse() mod_header = response.msg.getheader('last-modified') if not mod_header: # server did not return a last-modified, assume cannot cache return False if self._is_outdated(mod_header, local_filename): return False return True
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) opener = urllib2.build_opener() local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: request = urllib2.Request(url) except (socket.gaierror, socket.error), e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: f1 = opener.open(url) mod_header = f1.info().getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: mode = 'w' f2 = open(local_filename, mode) f2.write(f1.read()) f2.close() f1.close() except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) conn.close() self.setResult("file", result)
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def compute(self): self.checkInputPort('url') url = self.getInputFromPort("url") self._parse_url(url) conn = httplib.HTTPConnection(self.host) local_filename = self._local_filename(url) self.setResult("local_filename", local_filename) try: conn.request("GET", self.filename) except socket.gaierror, e: if self._file_is_in_local_cache(local_filename): debug.warning(('A network error occurred. HTTPFile will use' ' cached version of file')) result = core.modules.basic_modules.File() result.name = local_filename self.setResult("file", result) else: raise ModuleError(self, e[1]) else: response = conn.getresponse() mod_header = response.msg.getheader('last-modified') result = core.modules.basic_modules.File() result.name = local_filename if (not self._file_is_in_local_cache(local_filename) or not mod_header or self._is_outdated(mod_header, local_filename)): try: urllib.urlretrieve(url, local_filename) except IOError, e: raise ModuleError(self, ("Invalid URL: %s" % e)) except: raise ModuleError(self, ("Could not create local file '%s'" % local_filename)) result.name = local_filename self.setResult("file", result)
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def _is_outdated(self, remoteHeader, localFile): """Checks whether local file is outdated.""" local_time = \ datetime.datetime.utcfromtimestamp(os.path.getmtime(localFile)) remote_time = datetime.datetime.strptime(remoteHeader, "%a, %d %b %Y %H:%M:%S %Z") return remote_time > local_time
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def _is_outdated(self, remoteHeader, localFile): """Checks whether local file is outdated.""" local_time = \ datetime.datetime.utcfromtimestamp(os.path.getmtime(localFile)) try: remote_time = datetime.datetime.strptime(remoteHeader, "%a, %d %b %Y %H:%M:%S %Z") except: remote_time = datetime.datetime.strptime(remoteHeader, "%a, %d %B %Y %H:%M:%S %Z") return remote_time > local_time
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def mouseReleaseEvent(self, e): """mousePressEvent(e) -> None Keep the cursor after the last prompt. """ if e.button() == QtCore.Qt.LeftButton: # copy selection to clipboard self.copy() cursor = self.textCursor() cursor.movePosition(QtGui.QTextCursor.End) self.setTextCursor(cursor) return
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def mouseReleaseEvent(self, e): """mousePressEvent(e) -> None Keep the cursor after the last prompt. """ if e.button() == QtCore.Qt.LeftButton: # copy selection to clipboard self.copy() cursor = self.textCursor() cursor.movePosition(QtGui.QTextCursor.End) self.setTextCursor(cursor) return
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def enable_current_package(self): av = self._available_packages_list inst = self._enabled_packages_list item = av.currentItem() pos = av.indexFromItem(item).row() codepath = str(item.text()) pm = get_package_manager()
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def enable_current_package(self): av = self._available_packages_list inst = self._enabled_packages_list item = av.currentItem() pos = av.indexFromItem(item).row() codepath = str(item.text()) pm = get_package_manager()
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def enable_current_package(self): av = self._available_packages_list inst = self._enabled_packages_list item = av.currentItem() pos = av.indexFromItem(item).row() codepath = str(item.text()) pm = get_package_manager()
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def enable_current_package(self): av = self._available_packages_list inst = self._enabled_packages_list item = av.currentItem() pos = av.indexFromItem(item).row() codepath = str(item.text()) pm = get_package_manager()
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def dumpToFile(self, filename): """ dumpToFile() -> None Dumps itself as an image to a file, calling grabWindowPixmap """ pixmap = self.grabWindowPixmap() pixmap.save(filename,"PNG")
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def dumpToFile(self, filename): """ dumpToFile(filename: str, dump_as_pdf: bool) -> None Dumps itself as an image to a file, calling grabWindowPixmap """ pixmap = self.grabWindowPixmap() pixmap.save(filename,"PNG")
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def dumpToFile(self, filename): """ dumpToFile() -> None Dumps itself as an image to a file, calling grabWindowPixmap """ pixmap = self.grabWindowPixmap() pixmap.save(filename,"PNG")
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def dumpToFile(self, filename): """ dumpToFile() -> None Dumps itself as an image to a file, calling grabWindowPixmap """ if not dump_as_pdf: pixmap = self.grabWindowPixmap() pixmap.save(filename,"PNG")
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def saveToPDF(self, filename): printer = QtGui.QPrinter() printer.setOutputFormat(QtGui.QPrinter.PdfFormat) printer.setOutputFileName(filename) painter = QtGui.QPainter() painter.begin(printer) rect = painter.viewport() pixmap = self.grabWindowPixmap() size = pixmap.size() size.scale(rect.size(), QtCore.Qt.KeepAspectRatio) painter.setViewport(rect.x(), rect.y(), size.width(), size.height()) painter.setWindow(pixmap.rect()) painter.drawPixmap(0, 0, pixmap) painter.end()
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def saveToPDF(self, filename): printer = QtGui.QPrinter() printer.setOutputFormat(QtGui.QPrinter.PdfFormat) printer.setOutputFileName(filename) painter = QtGui.QPainter() painter.begin(printer) rect = painter.viewport() pixmap = self.grabWindowPixmap() size = pixmap.size() size.scale(rect.size(), QtCore.Qt.KeepAspectRatio) painter.setViewport(rect.x(), rect.y(), size.width(), size.height()) painter.setWindow(pixmap.rect()) painter.drawPixmap(0, 0, pixmap) painter.end()
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def saveToPDF(self, filename): printer = QtGui.QPrinter() printer.setOutputFormat(QtGui.QPrinter.PdfFormat) printer.setOutputFileName(filename) painter = QtGui.QPainter() painter.begin(printer) rect = painter.viewport() pixmap = self.grabWindowPixmap() size = pixmap.size() size.scale(rect.size(), QtCore.Qt.KeepAspectRatio) painter.setViewport(rect.x(), rect.y(), size.width(), size.height()) painter.setWindow(pixmap.rect()) painter.drawPixmap(0, 0, pixmap) painter.end()
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def saveToPDF(self, filename): printer = QtGui.QPrinter() printer.setOutputFormat(QtGui.QPrinter.PdfFormat) printer.setOutputFileName(filename) painter = QtGui.QPainter() painter.begin(printer) rect = painter.viewport() size.scale(rect.size(), QtCore.Qt.KeepAspectRatio) painter.setViewport(rect.x(), rect.y(), size.width(), size.height()) painter.setWindow(pixmap.rect()) painter.drawPixmap(0, 0, pixmap) painter.end()
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def load_package(self, pkg_name): reg = core.modules.module_registry.get_module_registry() package = reg.get_package_by_name(pkg_name)
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def def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules load_package(self, def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules pkg_name): def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules reg def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules = def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules core.modules.module_registry.get_module_registry() def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules package def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules = def create_dict(modules, ns, m, mdesc): md = {} if len(ns) == 0: d = {'_module_desc': mdesc, '_package': pkg,} modules[m] = type('module', (vistrails_module,), d) else: if ns[0] in modules: md = create_dict(modules[ns[0]], ns[1:], m, mdesc) else: md = create_dict(md, ns[1:], m, mdesc) modules[ns[0]] = md return modules def create_namespace_path(root, modules): for k,v in modules.iteritems(): if type(v) == type({}): d = create_namespace_path(k,v) modules[k] = d if root is not None: modules['_package'] = pkg return type(root, (object,), modules)() else: return modules reg.get_package_by_name(pkg_name)
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def getter(self, attr_name): desc_tuple = (attr_name, '') if desc_tuple in package.descriptors: module_desc = package.descriptors[desc_tuple] d = {'_module_desc': module_desc, '_package': self,} return type('module', (vistrails_module,), d) else: raise AttributeError("type object '%s' has no attribute " "'%s'" % (self.__class__.__name__, attr_name))
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def getter(self, attr_name): desc_tuple = (attr_name, '') if desc_tuple in package.descriptors: module_desc = package.descriptors[desc_tuple] d = {'_module_desc': module_desc, '_package': self,} return type('module', (vistrails_module,), d) else: raise AttributeError("type object '%s' has no attribute " "'%s'" % (self.__class__.__name__, attr_name))
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def switch_version(version, allow_fail=False): if self.current_version != -1 and not self.current_pipeline: debug.warning("current_version is not -1 and " "current_pipeline is None") if version != self.current_pipeline: # clear delayed actions # FIXME: invert the delayed actions and integrate them into # the general_action_chain? if len(self._delayed_actions) > 0: self._delayed_actions = [] self.current_pipeline = Pipeline() self.current_version = 0 if version == -1: return None
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def switch_version(version, allow_fail=False): if self.current_version != -1 and not self.current_pipeline: debug.warning("current_version is not -1 and " "current_pipeline is None") if version != self.current_pipeline: # clear delayed actions # FIXME: invert the delayed actions and integrate them into # the general_action_chain? if len(self._delayed_actions) > 0: self._delayed_actions = [] self.current_pipeline = Pipeline() self.current_version = 0 if version == -1: return None
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def initialize(*args, **kwargs): import core.packagemanager manager = core.packagemanager.get_package_manager() reg = core.modules.module_registry.get_module_registry()
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def initialize(*args, **kwargs): import core.packagemanager manager = core.packagemanager.get_package_manager() reg = core.modules.module_registry.get_module_registry()
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def getPortPosition(self, port, port_dict, optional_ports, next_pos, next_op, default_sig): """ getPortPosition(port: Port, port_dict: {PortSpec: QGraphicsPortItem}, optional_ports: [PortSpec], next_pos: [float, float], next_op: operator (operator.add, operator.sub), default_sig: str ) -> QPointF Return the scene position of a port matched 'port' in port_dict """ registry = get_module_registry()
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def getPortPosition(self, port, port_dict, optional_ports, next_pos, next_op, default_sig): """ getPortPosition(port: Port, port_dict: {PortSpec: QGraphicsPortItem}, optional_ports: [PortSpec], next_pos: [float, float], next_op: operator (operator.add, operator.sub), default_sig: str ) -> QPointF Return the scene position of a port matched 'port' in port_dict """ registry = get_module_registry()
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def merge_vt(self, host, port, db_name, user, new_vt_filepath, old_db_vt_id, is_local=True): """ Merge new_vt (new_vt_filepath) with current vt (old_db_vt_id)
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def merge_vt(self, host, port, db_name, user, new_vt_filepath, old_db_vt_id, is_local=True): """ Merge new_vt (new_vt_filepath) with current vt (old_db_vt_id)
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def executeMedley(self, xml_medley, extra_info=None): self.server_logger.info("executeMedley request received") try: self.server_logger.info(xml_medley) xml_string = xml_medley.replace('\\"','"') root = ElementTree.fromstring(xml_string) try: medley = MedleySimpleGUI.from_xml(root) except: #even if this error occurred there's still a chance of # recovering from it... (the server can find cached images) self.server_logger.error("couldn't instantiate medley")
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def executeMedley(self, xml_medley, extra_info=None): self.server_logger.info("executeMedley request received") try: self.server_logger.info(xml_medley) xml_string = xml_medley.replace('\\"','"') root = ElementTree.fromstring(xml_string) try: medley = MedleySimpleGUI.from_xml(root) except: #even if this error occurred there's still a chance of # recovering from it... (the server can find cached images) self.server_logger.error("couldn't instantiate medley")
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def run_from_db(self, host, port, db_name, vt_id, path_to_figures, version=None, pdf=False, vt_tag='',parameters='', is_local=True): self.server_logger.info("Request: run_vistrail_from_db(%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)" % \ (host, port, db_name, vt_id, path_to_figures, version, pdf, vt_tag, parameters, is_local))
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def get_wf_graph_pdf(self, host, port, db_name, vt_id, version, is_local=True): """get_wf_graph_pdf(host:str, port:int, db_name:str, vt_id:int, version:int) -> str Returns the relative url to the generated PDF """ self.server_logger.info("get_wf_graph_pdf(%s,%s,%s,%s,%s) request received" % \ (host, port, db_name, vt_id, version)) try: vt_id = long(vt_id) version = long(version) subdir = 'workflows' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s_%s.pdf" % (vt_id, version) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): #this server can send requests to other instances proxy = self.proxies_queue.get() try: result = proxy.get_wf_graph_pdf(host,port,db_name, vt_id, version, is_local) self.proxies_queue.put(proxy) self.server_logger.info("get_wf_graph_pdf returning %s"% result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0)
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def get_wf_graph_pdf(self, host, port, db_name, vt_id, version, is_local=True): """get_wf_graph_pdf(host:str, port:int, db_name:str, vt_id:int, version:int) -> str Returns the relative url to the generated PDF """ self.server_logger.info("get_wf_graph_pdf(%s,%s,%s,%s,%s) request received" % \ (host, port, db_name, vt_id, version)) try: vt_id = long(vt_id) version = long(version) subdir = 'workflows' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s_%s.pdf" % (vt_id, version) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): #this server can send requests to other instances proxy = self.proxies_queue.get() try: result = proxy.get_wf_graph_pdf(host,port,db_name, vt_id, version, is_local) self.proxies_queue.put(proxy) self.server_logger.info("get_wf_graph_pdf returning %s"% result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0)
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def get_wf_graph_png(self, host, port, db_name, vt_id, version, is_local=True): """get_wf_graph_png(host:str, port:int, db_name:str, vt_id:int, version:int) -> str Returns the relative url to the generated image """ self.server_logger.info("get_wf_graph_png(%s,%s,%s,%s,%s) request received" % \ (host, port, db_name, vt_id, version)) try: vt_id = long(vt_id) version = long(version) subdir = 'workflows' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s_%s.png" % (vt_id, version) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): #this server can send requests to other instances proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_wf_graph_png(host, port, db_name, vt_id, version, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) #if it gets here, this means that we will execute on this instance if not os.path.exists(filepath): os.mkdir(filepath)
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def get_wf_graph_png(self, host, port, db_name, vt_id, version, is_local=True): """get_wf_graph_png(host:str, port:int, db_name:str, vt_id:int, version:int) -> str Returns the relative url to the generated image """ self.server_logger.info("get_wf_graph_png(%s,%s,%s,%s,%s) request received" % \ (host, port, db_name, vt_id, version)) try: vt_id = long(vt_id) version = long(version) subdir = 'workflows' filepath = os.path.join(media_dir, 'graphs', subdir) base_fname = "graph_%s_%s.png" % (vt_id, version) filename = os.path.join(filepath,base_fname) if ((not os.path.exists(filepath) or os.path.exists(filepath) and not os.path.exists(filename)) and self.proxies_queue is not None): #this server can send requests to other instances proxy = self.proxies_queue.get() try: self.server_logger.info("Sending request to %s" % proxy) result = proxy.get_wf_graph_png(host, port, db_name, vt_id, version, is_local) self.proxies_queue.put(proxy) self.server_logger.info("returning %s" % result) return result except Exception, e: self.server_logger.error(str(e)) return (str(e), 0) #if it gets here, this means that we will execute on this instance if not os.path.exists(filepath): os.mkdir(filepath)
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_png(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_png(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def get_vt_graph_pdf(self, host, port, db_name, vt_id, is_local=True): """get_vt_graph_pdf(host:str, port: str, db_name: str, vt_id:str) -> str Returns the relative url of the generated image """
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def dict_compute(self): d = {} if self.hasInputFromPort('value'): Constant.compute(self) d.update(self.outputPorts['value']) if self.hasInputFromPort('addPair'): pairs_list = self.getInputListFromPort('addPair') d.update(pairs_list) if self.hasInputFromPort('addPairs'): d.update(self.getInputFromPort('addPairs')) self.setResult("d", d)
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def dict_compute(self): d = {} if self.hasInputFromPort('value'): Constant.compute(self) d.update(self.outputPorts['value']) if self.hasInputFromPort('addPair'): pairs_list = self.getInputListFromPort('addPair') d.update(pairs_list) if self.hasInputFromPort('addPairs'): d.update(self.getInputFromPort('addPairs')) self.setResult("value", d)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
| 477,495
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
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def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
| 477,496
|
def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
|
def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
| 477,497
|
def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
|
def setupModule(self, module): """ setupModule(module: Module) -> None Set up the item to reflect the info in 'module' """ # Update module info and visual self.id = module.id self.setZValue(float(self.id)) self.module = module self.center = copy.copy(module.center) if '__desc__' in module.db_annotations_key_index: self.label = module.get_annotation_by_key('__desc__').value.strip() self.description = module.label else: self.label = module.label self.description = '' self.setToolTip(self.description) self.computeBoundingRect() self.resetMatrix() self.translate(module.center.x, -module.center.y)
| 477,498
|
def setupScene(self, pipeline): """ setupScene(pipeline: Pipeline) -> None Construct the scene to view a pipeline """ old_pipeline = self.pipeline self.pipeline = pipeline
|
def setupScene(self, pipeline): """ setupScene(pipeline: Pipeline) -> None Construct the scene to view a pipeline """ old_pipeline = self.pipeline self.pipeline = pipeline
| 477,499
|
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