rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
|---|---|---|---|---|---|---|
} | } | public static void findOpenImages() { current = WindowManager.getIDList(); if (current == null) current = new int[0]; nImages = current.length; names = new String[nImages]; descriptions = new String[nImages]; for (int i=0; i<nImages; i++) { ImagePlus img = WindowManager.getImage(current[... | 55303 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55303/b59984375440a9807d545ea53af1d0d6c2a306d6/OMEController.java/buggy/loci/ome/ij/OMEController.java | [
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!passThroughAttributes && | !self.passThroughAttributes && | public Object get(StringTemplate self, String attribute) { //System.out.println("get("+self.getName()+", "+attribute+")"); if ( self==null ) { return null; } if ( lintMode ) { self.trackAttributeReference(attribute); } // is it here? Object o = null; if ( sel... | 52527 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52527/47c1d941e7ac641661f7fd8aa55416d9c13d8520/StringTemplate.java/buggy/src/org/antlr/stringtemplate/StringTemplate.java | [
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while (e.hasMoreElements()) { pendingAreas.addElement(e.nextElement()); | Box b = null; boolean eatMoreSpace = true; int eatenWidth = 0; while (eatMoreSpace) { if (e.hasMoreElements()) { b = (Box)e.nextElement(); if (b instanceof InlineSpace) { InlineSpace is = (InlineSpace)b; if (is.isEatable()) eatenWidth += is.getSize(); else eatMoreSpace = false; } else { eatMoreSpace = false; } } els... | public LineArea(FontState fontState, int lineHeight, int halfLeading, int allocationWidth, int startIndent, int endIndent, LineArea prevLineArea) { super(fontState); this.currentFontState = fontState; this.lineHeight = lineHeight; this.nominalFontSiz... | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/27f65a2055c1f7e7eaee23b819bcd3ecc560d94b/LineArea.java/buggy/src/org/apache/fop/layout/LineArea.java | [
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MessageDialog.openError( | ErrorDialog.openError( | public void run() { try { String perspId; IWorkbenchPage page = workbenchWindow.getActivePage(); if (page != null && page.getPerspective() != null) perspId = page.getPerspective().getId(); else perspId = workbenchWindow.getWorkbench().getPerspectiveRegistry().getDefaultPerspective(); workbenchWindo... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/2cacc51c2fa0bd083ab1f395cdea593610a271ff/OpenNewWindowAction.java/clean/bundles/org.eclipse.ui/Eclipse UI/org/eclipse/ui/internal/OpenNewWindowAction.java | [
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public void run() { boolean keepAlive = ((HttpConnector) connector).isKeepAlive(); try { dataIn = new DataInputStream(new BufferedInputStream(socket.getInputStream())); dataOut = new DataOutputStream(new BufferedOutputStream(socket.getOutputStream())); ... | 28323 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28323/7be29d6d0af6af9e23912aa7c31ce5b9303b40ea/HttpMessageReceiver.java/buggy/providers/http/src/java/org/mule/providers/http/HttpMessageReceiver.java | [
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String stringValue = (String) value; | String stringValue = value!=null?value.toString() : ""; | public void setValue(Object value) { String oldValue = ccombo.getText(); try { updating = true; if (attribute.equals(DataBinding.TEXT)) { String stringValue = (String) value; ccombo.setText(stringValue); } else if (attribute.equals(DataBinding.SELECTION)) { String items[] = ccombo.getItems(); int i... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/6fb9bdc2064e09683f9da3f8cd20d49a73da5b75/CComboUpdatableValue.java/clean/bundles/org.eclipse.jface.databinding/src/org/eclipse/jface/databinding/internal/swt/CComboUpdatableValue.java | [
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forward.setIcon(new ResourceImageIcon("icons/ScrollRight.gif")); | forward.setIcon(new SResourceIcon("icons/ScrollRight.gif")); | public SAnchorYearMonthChooser() { super(new SFlowLayout(CENTER)); getSession().addPropertyChangeListener(Session.LOCALE_PROPERTY, this); initLocaleDependent(); backward.setIcon(new ResourceImageIcon("icons/ScrollLeft.gif")); backward.setToolTipText("<"); backward.setVer... | 3911 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3911/03d659395931d26ae9105b003e2411268481560d/SAnchorYearMonthChooser.java/clean/wings/src/org/wings/date/SAnchorYearMonthChooser.java | [
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return newBignum(input.getRuby(), value); | return newBignum(input.getRuntime(), value); | public static RubyBignum unmarshalFrom(UnmarshalStream input) throws IOException { int signum = (input.readUnsignedByte() == '+' ? 1 : -1); int shortLength = input.unmarshalInt(); byte[] digits = new byte[shortLength * 2]; for (int i = digits.length - 1; i >= 0; i--) { digits[... | 47984 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47984/f235ab756f32ea9496f8f880066b46ad95ebb692/RubyBignum.java/clean/org/jruby/RubyBignum.java | [
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AbstractConnectorUi connectorUi = TasksUiPlugin.getRepositoryManager().getRepositoryConnectorUi( | AbstractRepositoryUi connectorUi = TasksUiPlugin.getRepositoryManager().getRepositoryUi( | public EditRepositoryWizard(TaskRepository repository) { super(); this.repository = repository; AbstractConnectorUi connectorUi = TasksUiPlugin.getRepositoryManager().getRepositoryConnectorUi( repository.getKind()); abstractRepositorySettingsPage = connectorUi.getSettingsPage(); abstractRepositorySettingsPage.... | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/cf0b994bf1db9c3d120f04e07595d8f6cec4520f/EditRepositoryWizard.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/internal/tasks/ui/wizards/EditRepositoryWizard.java | [
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assertTrue(ip.getArguments().indexOf("This was equal, but not for the eclipse") > 0); | assertTrue(ip.getArguments().indexOf("This was equal, but not for the eclipse") >= 0); | public void testBug75532() throws Exception { try { Writer writer = new StringWriter(); writer.write( "#if 2147483647 == 0x7fffffff\n"); // check reported hex problem //$NON-NLS-1$ writer.write( "#error This was equal, but not for the eclipse.\n"); //$NON-NLS-1$ writer.write( "#e... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/76d22e0f059cbf212c8a1653e4af1d7b9b3f0f57/CompleteParseASTTest.java/clean/core/org.eclipse.cdt.core.tests/parser/org/eclipse/cdt/core/parser/tests/CompleteParseASTTest.java | [
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ior = _ior; ior_str = getIORString(); | ior = _ior; ior_str = getIORString(); | public void decode( IOR _ior) { Vector internetProfiles = new Vector(); Vector multipleComponentsProfiles = new Vector(); for( int i = 0; i < _ior.profiles.length; i++ ) { Debug.output( 4, "Parsing IOR, found profile id: " + _ior.profiles[i].tag ); swit... | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/09063062726d1dad3a168e141ad7ee9a05fab5be/ParsedIOR.java/clean/src/org/jacorb/orb/ParsedIOR.java | [
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public org.quickfix.field.LegSecurityAltID getLegSecurityAltID() throws FieldNotFound { org.quickfix.field.LegSecurityAltID value = new org.quickfix.field.LegSecurityAltID(); | public quickfix.field.LegSecurityAltID getLegSecurityAltID() throws FieldNotFound { quickfix.field.LegSecurityAltID value = new quickfix.field.LegSecurityAltID(); | public org.quickfix.field.LegSecurityAltID getLegSecurityAltID() throws FieldNotFound { org.quickfix.field.LegSecurityAltID value = new org.quickfix.field.LegSecurityAltID(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/QuoteRequest.java/buggy/src/java/src/quickfix/fix44/QuoteRequest.java | [
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preferences.setDefault(CCorePreferenceConstants.TRANSLATION_TASK_TAGS, CCorePreferenceConstants.DEFAULT_TASK_TAG); optionNames.add(CCorePreferenceConstants.TRANSLATION_TASK_TAGS); | Map defaultOptionsMap = CodeFormatterConstants.getEclipseDefaultSettings(); | public void initializeDefaultPreferences() { Preferences preferences = CCorePlugin.getDefault().getPluginPreferences(); HashSet optionNames = CModelManager.OptionNames; // Compiler settings preferences.setDefault(CCorePreferenceConstants.TRANSLATION_TASK_TAGS, CCorePreferenceConstants.D... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/7a6144969813b38f3096fc41541ca66c5c9439eb/CCorePreferenceInitializer.java/clean/core/org.eclipse.cdt.core/src/org/eclipse/cdt/internal/core/CCorePreferenceInitializer.java | [
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iCodeTop = addByte((byte) TokenStream.SCOPE, iCodeTop); iCodeTop = addByte((byte) TokenStream.STRING, iCodeTop); | iCodeTop = addByte(TokenStream.SCOPE, iCodeTop); iCodeTop = addByte(TokenStream.STRING, iCodeTop); | private int generateICode(Node node, int iCodeTop) { int type = node.getType(); Node child = node.getFirstChild(); Node firstChild = child; switch (type) { case TokenStream.FUNCTION : { iCodeTop = addByte((... | 51275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51275/f6c346cc7699c007b0b9b27d9c3cdb5446052c64/Interpreter.java/buggy/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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public DeploymentInfo assembleDeploymentInfo(EnterpriseBeanInfo beanInfo) throws org.openejb.SystemException, org.openejb.OpenEJBException { boolean isEntity = false; EntityBeanInfo ebi = null; /*[1] Check the bean's type */ byte componentType; if(beanInfo instanceof... | 47052 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47052/4f52760bc3704be4f698b6ed3a2b5ae33ca1fa83/AssemblerTool.java/buggy/openejb1/modules/core/src/java/org/openejb/alt/assembler/classic/AssemblerTool.java | [
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} return; | } } finally { monitor.done(); | public void run(IProgressMonitor monitor) throws InvocationTargetException, InterruptedException { monitor.beginTask("Updating search options...", IProgressMonitor.UNKNOWN); try { connector.updateAttributes(repository, monitor); } catch (CoreException ce) { if (ce.getStatus().getException() in... | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/56aa3635192094aca30c2e6950ac1c9489c7462d/BugzillaSearchPage.java/clean/org.eclipse.mylyn.bugzilla.ui/src/org/eclipse/mylyn/internal/bugzilla/ui/search/BugzillaSearchPage.java | [
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if (_prof != null) _prof.destroy(); | if (_prof != null) { stopTiming(); _prof.destroy(); } | public void clear() { Iterator i = _tools.entrySet().iterator(); while (i.hasNext()) { Map.Entry m = (Map.Entry) i.next(); ContextTool tool = (ContextTool) _toolbox.get(m.getKey()); tool.destroy(m.getValue()); } _tools.clear(); _globals.clear(); _bean = null; ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/1163a46afccd305c843985eac05d684da7bc14d8/Context.java/buggy/webmacro/src/org/webmacro/Context.java | [
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hd.type(), | accumTypeArg, | Tree run_finished( int state ) { Tree hd = cf.newPair( gen.mkIntLit( cf.pos, state ), gen.mkDefaultValue(cf.pos, elementType)); //System.err.println(hd.type); return gen.Cons( cf.pos, hd.type(... | 49529 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49529/c743c68faa7ea719df74394bd744808e2f6090f6/LeftTracerInScala.java/clean/sources/scalac/transformer/matching/LeftTracerInScala.java | [
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AST tmp1015_AST_in = (AST)_t; | AST tmp1014_AST_in = (AST)_t; | public final void deletewidgetpoolstate(AST _t) throws RecognitionException { AST deletewidgetpoolstate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t1253 = _t; AST tmp1014_AST_in = (AST)_t; match(_t,DELETE_KW); _t = _t.getFirstChild(); AST tmp1015_AST_in = (AST)_t; match(_t,WIDGETPOOL); _t = _t.getNex... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/daa15e07422d3491bbbb4d0060450c81983332a4/TreeParser03.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparser03/TreeParser03.java | [
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return selectAfter(entityType, entityKey, invalidation, conn); | return selectAfter(entityType, entityKey, invalidation, cacheID, conn); | public CachedEntityInvalidation[] findAfter (Date invalidation, Class entityType, String entityKey)throws CachingException{ Connection conn = null; try { conn = RDBMServices.getConnection(); return selectAfter(entityType, entityKey, invalidation, conn); } finally { RDBMServices.relea... | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/0da243b436f213f3cfc3af3dd4109b0678bd015f/RDBMCachedEntityInvalidationStore.java/buggy/source/org/jasig/portal/concurrency/caching/RDBMCachedEntityInvalidationStore.java | [
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this.var = var; | this.var = var; | public void setVar(String var) { this.var = var; } | 51800 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51800/cbaa8d2430c2bf467e589a423fee7c83e3f0eb2f/MessageTag.java/buggy/jelly-tags/jms/src/java/org/apache/commons/jelly/tags/jms/MessageTag.java | [
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public static String getReportFileName(ModuleId mid, String conf) { return mid.getOrganisation() + "-" + mid.getName() + "-" + conf+".xml"; | public static String getReportFileName(ConfigurationResolveReport report) { return getReportFileName(report.getModuleDescriptor().getModuleRevisionId().getModuleId(), report.getConfiguration()); | public static String getReportFileName(ModuleId mid, String conf) { return mid.getOrganisation() + "-" + mid.getName() + "-" + conf+".xml"; } | 45724 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45724/76b3e400a9328a7cc07c38bf71900a9a529b772a/XmlReportOutputter.java/buggy/src/java/fr/jayasoft/ivy/report/XmlReportOutputter.java | [
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try{ classSpec = callback.classSpecifierSafe( classSpec ); } catch( Exception e ){} | try{ callback.classSpecifierSafe( classSpec ); } catch( Exception e ){} | protected void classSpecifier( Object owner ) throws Backtrack { Token classKey = null; Token mark = mark(); // class key switch (LT(1)) { case Token.t_class: case Token.t_struct: case Token.t_union: classKey = consume(); break; default: throw backtrack; } Object classSpec = null; try{ classS... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/1408e4cd833b907fe44a1e7f51c25316752fa21f/Parser.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/Parser.java | [
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while((line = in.readLine()) != null) { String[] words = line.split("\\s"); if(!(words[0].equals("-DOCSTART-"))) { if(words.length > 2) { start = buf.length(); buf.append(words[0]+" "); end = buf.length()-1; | while((line = in.readLine()) != null) { String[] words = line.split("\\s"); if(!(words[0].equals("-DOCSTART-"))) { if(words.length > 2) { start = buf.length(); buf.append(words[0]+" "); end = buf.length()-1; | public void loadWordPerLineFile(TextBase base, File file) throws IOException, FileNotFoundException { this.tokenizer = new Tokenizer(Tokenizer.SPLIT, " "); if (labels == null) labels = new BasicTextLabels(base); String id = file.getName(); LineNumberReader in = new LineNumberReader(new FileReader(file)); Str... | 51753 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51753/e6f5547ded82a315c0b8bcee96ff61710888c5a2/TextBaseLoader.java/clean/src/edu/cmu/minorthird/text/TextBaseLoader.java | [
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schemaDoc = null; fLastSchemaWasDuplicate = false; return null; } | return getSchema(schemaNamespace, schemaSource, mustResolve, referType); } | private Document getSchema(String schemaNamespace, String schemaHint, String baseSystemId, boolean mustResolve, short referType) { // contents of this method will depend on the system we adopt for entity resolution--i.e., XMLEntityHandler, EntityHandler, etc. XMLInputSour... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/970ce40ae1182183dee7e0be723e7037875919c2/XSDHandler.java/buggy/src/org/apache/xerces/impl/xs/traversers/XSDHandler.java | [
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return result; } | return result; } | public MetadataService getMetadataService(Request request) { MetadataService result = null; Application application = (Application) request.getAttributes().get( Application.class.getCanonicalName()); if (application != null) { result = application.getMetadataService();... | 14172 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/14172/7cdaa46937a3345641a43a297987a7618fb0d678/LocalClientHelper.java/clean/module/com.noelios.restlet/src/com/noelios/restlet/local/LocalClientHelper.java | [
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Set s = new TreeSet(); File[] files = new File(sourceDir).listFiles(); for (int i = 0; i < files.length; ++i) { String name = files[i].getName(); if (!name.endsWith(".xml")) continue; String locale = name.substring(0,name.length()-4); if (!m.reset(locale).matches()) continue; s.add(locale); } return s; | Set s = new TreeSet(); File[] files = new File(sourceDir).listFiles(); for (int i = 0; i < files.length; ++i) { String name = files[i].getName(); if (!name.endsWith(".xml")) continue; String locale = name.substring(0,name.length()-4); if (!m.reset(locale).matches()) continue; s.add(locale); | public static Set getMatchingXMLFiles(String sourceDir, Matcher m) { Set s = new TreeSet(); File[] files = new File(sourceDir).listFiles(); for (int i = 0; i < files.length; ++i) { String name = files[i].getName(); if (!name.endsWith(".xml")) continue; //if (nam... | 27800 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27800/4716264464632750d34da5032a0718e1d756a967/CLDRFile.java/buggy/tools/java/org/unicode/cldr/util/CLDRFile.java | [
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LocalVariableGen nodeIteratorTemp = methodGen.addLocalVariable("filter_expr_tmp1", | if (predicate.isNthPositionFilter()) { int nthIteratorIdx = cpg.addMethodref(NTH_ITERATOR_CLASS, "<init>", "("+NODE_ITERATOR_SIG+"I)V"); LocalVariableGen iteratorTemp = methodGen.addLocalVariable("filter_expr_tmp1", Util.getJCRefType(NODE_ITERATOR_SIG), null, null); iteratorTemp.setStart( il.append(new ASTO... | public void translatePredicates(ClassGenerator classGen, MethodGenerator methodGen) { final ConstantPoolGen cpg = classGen.getConstantPool(); final InstructionList il = methodGen.getInstructionList(); // If not predicates left, translate primary expression if (_predicates.size() == 0) { translate(... | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/55cc23b76b65fedeabb4514a28f51c52d307cff3/FilterExpr.java/clean/src/org/apache/xalan/xsltc/compiler/FilterExpr.java | [
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if ( selectedLevel == null) | if ( selectedLevel == null ) | public void makeMindControlRequest() { String [] levelArray = new String[12]; for ( int i = 0; i < 12; ++i ) levelArray[i] = "Level " + i; String selectedLevel = (String) JOptionPane.showInputDialog( null, "Set the device to what level?", "Change mind control device from level " + KoLCharacter.getMindControlLev... | 50364 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50364/b844c6801e7295d71c37f742863c8438ef6090a8/KoLmafiaGUI.java/clean/src/net/sourceforge/kolmafia/KoLmafiaGUI.java | [
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_form.addParameter(SCRIPT_PREFIX_PARAMETER, "window.opener.document." + _form.getID()); | _form.addParameter(SCRIPT_PREFIX_PARAMETER, "window.opener.document.getElementById(\"" + _form.getID() +")\"."); | public PresentationObject getTable(IWContext iwc, IWBundle bundle) { Table table = new Table(2, 1); table.setCellpadding(0); table.setCellspacing(0); Parameter value = new Parameter(getChooserParameter(), ""); if (_stringValue != null) { value.setValue(_stringValue); } table.add(value); PresentationObject ob... | 52001 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52001/d4595ad79290ab0c3ed9f7df30c2855bfa8d0fe7/AbstractChooser.java/buggy/src/java/com/idega/presentation/ui/AbstractChooser.java | [
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public void printCharacterEntityReference(char[] code) throws IOException { | public void printCharacterEntityReference (char[] code, boolean first, boolean preceedingSpace) throws IOException { if ((prettyPrinter.getFormat()) && (xmlSpace.get(0) != Boolean.TRUE)) { if (first) { printNewline(); printString(margin.toString()); } else if (preceedingSpace) { int endCol = column + code.length + 3; ... | public void printCharacterEntityReference(char[] code) throws IOException { printString("&#"); printCharacters(code); printCharacter(';'); } | 46680 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46680/7db088f8b9217653c21ad110592b7ebe49dad32a/OutputManager.java/buggy/sources/org/apache/batik/transcoder/svg2svg/OutputManager.java | [
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list.addChild("li").addChild("a", "href", "#running", "Running (" + running + ")"); list.addChild("li").addChild("a", "href", "#queued", "Queued (" + queued + ")"); list.addChild("li").addChild("a", "href", "#visited", "Visited (" + visited + ")"); list.addChild("li").addChild("a", "href", "#failed", "Failed (" + faile... | list.addChild("li").addChild("a", "href", "#running", "Running (" + running + ')'); list.addChild("li").addChild("a", "href", "#queued", "Queued (" + queued + ')'); list.addChild("li").addChild("a", "href", "#visited", "Visited (" + visited + ')'); list.addChild("li").addChild("a", "href", "#failed", "Failed (" + faile... | private HTMLNode createNavbar(PageMaker pageMaker, int running, int queued, int visited, int failed) { HTMLNode navbar = pageMaker.getInfobox("navbar", "Page Navigation"); HTMLNode list = pageMaker.getContentNode(navbar).addChild("ul"); list.addChild("li").addChild("a", "href", "#running", "Running (" + running + "... | 50493 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50493/62fd59041864b4ed1f43adc676de6bfb5ea977f3/Spider.java/clean/src/freenet/clients/http/Spider.java | [
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if(newCCattr != null) { if (newCCattr.getNewValue().equals("")){ | if (newCCattr != null) { if (newCCattr.getNewValue().equals("")) { | private void setDefaultCCValue(){ Attribute newCCattr = bug.getAttributeForKnobName("newcc"); Attribute owner = bug.getAttribute("AssignedTo"); //Don't add the cc if the user is the bug owner if(owner != null && owner.getValue().indexOf(BugzillaPreferencePage.getUserName()) > -1){ return; } //Add the user ... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/175b3471b8f3ebe4611aa1721b1c96ed45badae8/ExistingBugEditor.java/clean/org.eclipse.mylyn.bugzilla.ui/src/org/eclipse/mylyn/bugzilla/ui/editor/ExistingBugEditor.java | [
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public Object convertTo(Class paramType, String data) throws ConversionException | public Object convertTo(Class paramType, ConversionData data, Map working) throws ConversionException | public Object convertTo(Class paramType, String data) throws ConversionException { /* if (!(data instanceof Date)) { throw new ConversionException("Class: " + data.getClass() + " is not a java.util.Date"); } */ if (data.startsWith("[")) { dat... | 45384 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45384/7547063298291f41840aee0b03582a3f6bc04cd6/DateConverter.java/buggy/java/uk/ltd/getahead/dwr/convert/DateConverter.java | [
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addValue(sizeName, contentLengthFromRequest, null); | List vals = new ArrayList(); vals.add(contentLengthFromRequest); addValue(sizeName, vals, null); | public RequestParameters(PipelineContext pipelineContext, Document requestDocument) { try { this.pipelineContext = pipelineContext; List parameters = requestDocument.getRootElement().element("parameters").elements("parameter"); // Get encryption key if (XFormsUtils... | 52783 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52783/0c4faa34b9398ef22e39712bf16860e7d2ea849a/RequestParameters.java/buggy/src/java/org/orbeon/oxf/processor/xforms/input/RequestParameters.java | [
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progressBar = new JProgressBar(0, 100); progressBar.setStringPainted(true); progressBar.setString("Wake up Neo ..."); | this.progressBar = new JProgressBar(0, 100); this.progressBar.setStringPainted(true); this.progressBar.setString("Wake up Neo ..."); | public void display() { JPanel panel = new JPanel(); splashScreen = new JDialog(); splashScreen.setUndecorated(true); splashScreen.setResizable(false); panel.setLayout(new BorderLayout(10, 10)); JLabel thawLabel = new JLabel(" Thaw"); thawLabel.setFont(new Font("Dialog", Font.BOLD, 30)); panel.add(thaw... | 47012 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47012/88402a3bc59123261d50a7cfed0ac20de2b772f6/SplashScreen.java/clean/src/thaw/core/SplashScreen.java | [
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setModified(true); | public void setDescription(String description) { if (((description == null) && (_description != null)) || ((description != null) && (_description == null)) || ((description != null) && (_description != null) && !description.equals(_description))) { if (!XSS_ALLOW_DESCRIPTION) { description = XSSUtil.str... | 57692 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57692/f4d6afc6707f57fd84bf6b624f0c119657b0a766/WikiNodeModel.java/clean/portal-ejb/src/com/liferay/portlet/wiki/model/WikiNodeModel.java | [
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} | } | public Long lookup(String name) { Long retval = null; synchronized (nameSpace) { retval = nameSpace.get(name); if (retval == null){ retval = loadNameCache(name); } } return retval; } | 48631 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48631/987e5fd762c50fabd2d33a1688473f28f21457f4/PersistantInMemoryDataSpace.java/buggy/src/com/sun/gi/objectstore/tso/dataspace/PersistantInMemoryDataSpace.java | [
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if (!raw) { this.postProcessNode(node); | itemOps.validate(node); itemOps.store(node); succeeded = true; } finally { if (!succeeded) { aborted = true; itemOps.cancel(); | public void endNode(NodeInfo nodeInfo) throws RepositoryException { //End of skip mode if (skipNode != null && skipNode.equals(nodeInfo)) { skip = false; skipNode = null; return; } if (aborted || skip) { return; } try { ... | 49304 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49304/b29ec798eb5877179b047d8a361d6ca99639345b/WorkspaceImporter.java/buggy/jackrabbit/src/main/java/org/apache/jackrabbit/core/xml/WorkspaceImporter.java | [
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return (getMillis() > readableInstant.getMillis()); | return (getMillis() > instant.getMillis()); | public final boolean isAfter(ReadableInstant readableInstant) { if (readableInstant == null) { throw new IllegalArgumentException("The instant must not be null"); } return (getMillis() > readableInstant.getMillis()); } | 52681 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52681/8acb3651b1e903438a4a98811b7422c0f4c00ff3/AbstractInstant.java/clean/JodaTime/src/java/org/joda/time/AbstractInstant.java | [
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Set<String> closureSet = new LinkedHashSet<String>(); | List<String> closureSet = new LinkedList<String>(); | private void unloadPluginJARWithDialog(PluginJAR jar) { unloaded = new HashSet<String>(); Set<String> dependents = jar.getDependentPlugins(); if(dependents.size() == 0) unloadPluginJAR(jar); else { Set<String> closureSet = new LinkedHashSet<String>(); PluginJAR.transitiveClosure(dependents, closur... | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/6fe1892f3c33bb95c6180a53cd9144925552f6d5/ManagePanel.java/buggy/org/gjt/sp/jedit/pluginmgr/ManagePanel.java | [
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clear(); addAll(collection); for (Iterator iterator = collection.iterator(); iterator.hasNext();) { final Object o = iterator.next(); Util.assertTrue(relationship.toClass.isInstance(o)); } } | clear(); addAll(collection); for (Iterator iterator = collection.iterator(); iterator.hasNext();) { final Object o = iterator.next(); Util.assertTrue(relationship.toClass.isInstance(o)); } } | public void set(Collection collection) { clear(); addAll(collection); for (Iterator iterator = collection.iterator(); iterator.hasNext();) { final Object o = iterator.next(); Util.assertTrue(relationship.toClass.isInstance(o)); } } | 51263 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51263/b5b5168edc3af09cb74945a80b0c36e6630ed502/RelationshipList.java/buggy/src/main/mondrian/jolap/RelationshipList.java | [
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throw new SyntaxException(getPosition(null), "Invalid escape character syntax"); | throw new SyntaxException(getPosition(null, false), "Invalid escape character syntax"); | public char readEscape() { char c = read(); switch (c) { case '\\' : // backslash return c; case 'n' : // newline return '\n'; case 't' : // horizontal tab return '\t'; case 'r' : // carriage return ... | 47273 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47273/b1293eda8454686e846e2a9837b348e2983bb423/LexerSource.java/buggy/src/org/jruby/lexer/yacc/LexerSource.java | [
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+ "from [Sales] " + "where ([Time].[1997])"); | + "from [Sales] " + "where ([Time].[1997])"); | public void testNativeFilter() { if (!MondrianProperties.instance().EnableNativeFilter.get()) { return; } checkNative( 32, 18, "select {[Measures].[Store Sales]} ON COLUMNS, " + "Order(Filter(Descendants([Customers].... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/16833459030984b73b9afede5613a2814b194f6f/NonEmptyTest.java/buggy/testsrc/main/mondrian/rolap/NonEmptyTest.java | [
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AST __t1813 = _t; AST tmp1331_AST_in = (AST)_t; | AST __t1816 = _t; AST tmp1330_AST_in = (AST)_t; | public final void publishstate(AST _t) throws RecognitionException { AST publishstate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t1813 = _t; AST tmp1331_AST_in = (AST)_t; match(_t,PUBLISH); _t = _t.getFirstChild(); expression(_t); _t = _retTree; { if (_t==null) _t=ASTNULL; switch ( _t.getType()) { ... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/daa15e07422d3491bbbb4d0060450c81983332a4/TreeParser03.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparser03/TreeParser03.java | [
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getMaxHits()); | getMaxHits()); | public boolean performAction() { if (repository == null) { MessageDialog.openInformation(Display.getCurrent().getActiveShell(), IBugzillaConstants.TITLE_MESSAGE_DIALOG, TaskRepositoryManager.MESSAGE_NO_REPOSITORY); return false; } if (restoreQueryOptions) { saveWidgetValues(); } getPatternData(summaryPa... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/b7718da2b050618d6137478a5c240f368f3687e9/BugzillaSearchPage.java/clean/org.eclipse.mylyn.bugzilla.ui/src/org/eclipse/mylyn/internal/bugzilla/ui/search/BugzillaSearchPage.java | [
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setImageDescriptor(WorkbenchImages.getImageDescriptor( ISharedImages.IMG_TOOL_UNDO)); setDisabledImageDescriptor(WorkbenchImages.getImageDescriptor( ISharedImages.IMG_TOOL_UNDO_DISABLED)); | ISharedImages sharedImages = PlatformUI.getWorkbench().getSharedImages(); setImageDescriptor(sharedImages.getImageDescriptor(ISharedImages.IMG_TOOL_UNDO)); setDisabledImageDescriptor(sharedImages.getImageDescriptor( ISharedImages.IMG_TOOL_UNDO_DISABLED)); | public UndoRetargetAction() { super(ActionFactory.UNDO.getId(), MessageFormat.format(GEFMessages.UndoAction_Label, new Object[] {""}).trim()); //$NON-NLS-1$ setImageDescriptor(WorkbenchImages.getImageDescriptor( ISharedImages.IMG_TOOL_UNDO)); setDisabledImageDescriptor(WorkbenchImages.getImageDescript... | 11225 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11225/9435089aca0be3ad98074210c6483c469e966ccf/UndoRetargetAction.java/buggy/org.eclipse.gef/src/org/eclipse/gef/ui/actions/UndoRetargetAction.java | [
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id.setRunAs(j2eeLoader.loadRunAs(LoaderUtil.getChild(root, "run-as"))); | id.setRunAs(J2EELoader.loadRunAs(LoaderUtil.getChild(root, "run-as"))); | private SecurityIdentity loadSecurityIdentity(Element root) { if(root == null) { return null; } SecurityIdentity id = new SecurityIdentity(); j2eeLoader.loadDescribable(root, id); if(LoaderUtil.getChild(root, "use-caller-identity") != null) { id.setUseCallerI... | 12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/c5087214ca8f0e64c671620ee9fdf9258219e3e7/EjbJarLoader.java/clean/modules/core/src/java/org/apache/geronimo/xml/deployment/EjbJarLoader.java | [
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e.doit = ( "0123456789\0\b\u007f".indexOf( e.character ) != -1 ); | e.doit = ( "0123456789\0\b\u007f".indexOf( e.character ) != -1 ); | public void verifyText( VerifyEvent e ) { e.doit = ( "0123456789\0\b\u007f".indexOf( e.character ) != -1 ); } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/ffe25c84db39ac36a136a2b6d3c13bc9dc6b6fd2/CascadingParametersDialog.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/CascadingParametersDialog.java | [
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getPageArtifacts(page); | boolean canEval = getAuthzManager().isAuthorized(MatrixFunctionConstants.EVALUATE_MATRIX, page.getPageDefinition().getId()); boolean canReview = getAuthzManager().isAuthorized(MatrixFunctionConstants.REVIEW_MATRIX, getIdManager().getId(page.getPageDefinition().getToolId())); if (!canReview) { canReview = getAuthzMana... | public void checkPageAccess(String id) { WizardPage page = getWizardPage(getIdManager().getId(id)); // todo need to figure out matrix or wizard authz stuff here // this should set the security advisor for the attached artifacts. getPageArtifacts(page); } | 48996 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48996/419df908463b203af5589861d64b8d9cd7db88f8/HibernateMatrixManagerImpl.java/buggy/matrix/api-impl/src/java/org/theospi/portfolio/matrix/HibernateMatrixManagerImpl.java | [
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public void parse (String systemId) | public void parse(String systemId) | public void parse (String systemId) throws SAXException, IOException { parse (new InputSource (systemId)); } | 56365 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56365/7fb7568e63c3fe14af521de4699cb37898923ca7/XmlReader.java/clean/libjava/gnu/xml/aelfred2/XmlReader.java | [
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public static void setInt(Object array, int index, int value) { | public static void setInt(Object array, int index, int value) { | public static void setInt(Object array, int index, int value) { if (array instanceof int[]) ((int[]) array)[index] = value; else setLong(array, index, value); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/a7d00a0887a14efd1decaed4a9310cdaa2e752aa/Array.java/buggy/core/src/classpath/java/java/lang/reflect/Array.java | [
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RobertsJPanel robertsJPanel = new RobertsJPanel(); super.mTabbedPane.addTab(NAME_SOME_LIST, null, robertsJPanel); | RobertsJPanel robertsJPanel = new RobertsJPanel( mTransformJPanel.getTransformContext()); ClientJPanel clientJPanel = new ClientJPanel( mTransformJPanel.getTransformContext()); super.mTabbedPane.addTab(NAME_SOME_LIST, null, robertsJPanel ); super.mTabbedPane.addTab( CLIENT_PANEL_NAME, null, clientJPanel ); | protected void generateGui(){ // SOME LIST ///// RobertsJPanel robertsJPanel = new RobertsJPanel(); super.mTabbedPane.addTab(NAME_SOME_LIST, null, robertsJPanel); //super.savableMap.put(NAME_SOME_LIST, someJPanel); //super.refreshableMap.put(NAME_SOME_LIST, someJPanel); // EVENT LOG /////// //L... | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/b2636cf80e6d327d24eef89dc997c425efc12e5b/MTransformControlsJPanel.java/buggy/tran/openvpn/main/com/metavize/tran/openvpn/gui/MTransformControlsJPanel.java | [
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public void testShouldAppendPathWithChildPathAdjustment() { String parentPath = "http://maven.apache.org/shared/maven-shared-parent"; String childPath = "file-management"; String pathAdjustment = ".."; String result = ((DefaultModelInheritanceAssembler) assembler).appendPath( ... | 50542 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50542/ad38e46b4b6bbc3fb214b07966cc42877ecec536/DefaultModelInheritanceAssemblerTest.java/buggy/maven-project/src/test/java/org/apache/maven/project/inheritance/DefaultModelInheritanceAssemblerTest.java | [
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bds.setUser(JDBC2Tests.getUser()); bds.setPassword(JDBC2Tests.getPassword()); | bds.setUser(TestUtil.getUser()); bds.setPassword(TestUtil.getPassword()); | protected void initializeDataSource() { if (bds == null) { bds = new SimpleDataSource(); String db = JDBC2Tests.getURL(); if (db.indexOf('/') > -1) { db = db.substring(db.lastIndexOf('/') + 1); } else if (db.indexOf(':') > -1) { db = db.substring(db.lastIndexOf(':') + 1); } bds.setDatabaseNam... | 46312 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46312/d634a5903f615a45cb463155c04d3df904e1b91a/SimpleDataSourceTest.java/clean/src/interfaces/jdbc/org/postgresql/test/jdbc2/optional/SimpleDataSourceTest.java | [
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return this; } | return this; } | public RubyObject m_include(RubyObject[] modules) { for (int i = 0; i < modules.length; i++) { funcall(getRuby().intern("append_features"), modules[i]); } return this; } | 47134 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47134/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyModule.java/clean/org/jruby/RubyModule.java | [
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Message pk = DMT.createFNPSSKPubKey(uid, ((NodeSSK)block.getKey()).getPubKey().asBytes()); | DSAPublicKey key = ((NodeSSK)block.getKey()).getPubKey(); Message pk = DMT.createFNPSSKPubKey(uid, key.asBytes()); Logger.minor(this, "Sending PK: "+key+" "+key.writeAsField()); | public void run() { try { Logger.minor(this, "Handling a request: "+uid); htl = source.decrementHTL(htl); Message accepted = DMT.createFNPAccepted(uid); source.send(accepted); Object o = node.makeRequestSender(key, htl, uid, source, closestLoc, false, true);... | 50619 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50619/9040e74c9d4bed81c0517ea0a84d34bc23f54def/RequestHandler.java/clean/src/freenet/node/RequestHandler.java | [
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label_10: | label_12: | final public void caseStatement() throws ParseException { switch ((jj_ntk==-1)?jj_ntk():jj_ntk) { case CASE: jj_consume_token(CASE); break; case CASEX: jj_consume_token(CASEX); break; default: jj_la1[37] = jj_gen; jj_consume_token(-1); throw new ParseException(); } ... | 4167 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4167/99592a25ccb1145957f5cf8c05fa3a28f89257e6/VerilogParserCore.java/clean/src/_generated/net/sourceforge/veditor/parser/VerilogParserCore.java | [
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stringBuffer.append(TEXT_271); | stringBuffer.append(TEXT_232); | public String generate(Object argument) { final StringBuffer stringBuffer = new StringBuffer(); final GenCommonBase genElement = (GenCommonBase) ((Object[]) argument)[0];final GenLinkLabel genLabel = (GenLinkLabel)genElement;final ImportAssistant importManager = (ImportAssistant) ((Object[]) argument)[1];GenLi... | 7409 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7409/de70953cec74fbba0ed0cfbed37c36c0b594b3db/LinkLabelEditPartGenerator.java/buggy/plugins/org.eclipse.gmf.codegen.lite/src-templates/org/eclipse/gmf/codegen/templates/lite/parts/LinkLabelEditPartGenerator.java | [
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Token xsp; xsp = jj_scanpos; if (jj_3R_346()) { jj_scanpos = xsp; if (jj_3R_347()) return true; if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; } else if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; if (jj_3R_258()) return true; | if (jj_scan_token(RSIGNEDSHIFT)) return true; | final private boolean jj_3R_296() { Token xsp; xsp = jj_scanpos; if (jj_3R_346()) { jj_scanpos = xsp; if (jj_3R_347()) return true; if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; } else if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; if (jj_3R_258()) return true; if (jj... | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/83d81b076b32acdf3f82077c7f4c2a2e160aa32f/JavaParser.java/clean/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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static void compileRules(String rules, OutputStream os) throws IOException { // // Read the input rules, generate a parse tree, symbol table, // and list of all Unicode Sets referenced by the rules. // RBBIRuleBuilder builder = new RBBIRuleBuilder(rules); builder.fScanne... | 5620 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5620/28faf2c460288b87a83f18f300290840f46e099d/RBBIRuleBuilder.java/clean/icu4j/src/com/ibm/icu/text/RBBIRuleBuilder.java | [
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if( DEBUG ) { final String message = REZ.getString( "configure-attribute.notice", name, value ); getLogger().debug( message ); } if( name.endsWith( "-ref" ) ) | if( name.toLowerCase().endsWith( "-ref" ) ) | private void setAttribute( final ObjectConfigurer configurer, final Object object, final String name, final String value, final Context context ) throws ConfigurationException { i... | 639 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/639/f52a170159f6dc5beebe07bfb945cb5b3fa5290b/DefaultConfigurer.java/buggy/proposal/myrmidon/src/java/org/apache/myrmidon/components/configurer/DefaultConfigurer.java | [
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LineLocation location = new LineLocation (allMIBreakpoints[i].getFile(), allMIBreakpoints[i].getLine()); Breakpoint newBreakpoint = new LineBreakpoint(target, type, location, condition); newBreakpoint.setMIBreakpoints(new MIBreakpoint[] {allMIBreakpoints[i]}); bList.add(newBreakpoint); | String function = allMIBreakpoints[i].getFunction(); String file = allMIBreakpoints[i].getFile(); int line = allMIBreakpoints[i].getLine(); String addr = allMIBreakpoints[i].getAddress(); if (file != null && file.length() > 0 && line > 0) { LineLocation location = createLineLocation (allMIBreakpoints[i].getFile(), all... | public void update(Target target) throws CDIException { MISession miSession = target.getMISession(); MIBreakpoint[] allMIBreakpoints = getAllMIBreakpoints(miSession); List bList = getBreakpointsList(target); List eventList = new ArrayList(allMIBreakpoints.length); for (int i = 0; i < allMIBreakpoints.length; i++)... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/f67b7c082089139a6b67a4b036e3f07eb230f7a2/BreakpointManager.java/clean/debug/org.eclipse.cdt.debug.mi.core/cdi/org/eclipse/cdt/debug/mi/core/cdi/BreakpointManager.java | [
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param[1] = new ParameterListItem(); | param[1].clear(); | private boolean cursorFetch(int fetchType, int rowNum) throws SQLException { // SAfe We have to synchronize this, in order to avoid mixing up our // actions with another CursorResultSet's and eating up its // results. synchronized (conn.mainTdsMonitor) { T... | 5753 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5753/fbc92b9b9d3be5beafda76e8c5bfe04325cca422/CursorResultSet.java/clean/src/main/net/sourceforge/jtds/jdbc/CursorResultSet.java | [
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int secondCharacter = firstCharacter; for (int i = firstCharacter; i < chars.length; i++) { if (Character.isWhitespace(chars[i])) { secondCharacter = i; break; } } if (gc.textExtent(textValue.substring(0, secondCharacter)).x > maxWidth) { if (gc.textExtent(textValue.substring(0, firstCharacter)).x > maxWidth) { | int secondCharacter = firstCharacter; for (int i = firstCharacter; i < chars.length; i++) { if (Character.isWhitespace(chars[i])) { secondCharacter = i; break; } } if (gc.textExtent(textValue.substring(0, secondCharacter)).x > maxWidth) { if (gc.textExtent(textValue.substring(0, firstCharacter)).x > maxWidth) { | private static int findSecondWhitespace(String textValue, GC gc, int maxWidth) { int firstCharacter = 0; char[] chars = textValue.toCharArray(); //Find the first whitespace for (int i = 0; i < chars.length; i++) { if (Character.isWhitespace(chars[i])) { ... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/7506e243e595688c711e578f314dd4c2eaaee9e1/ProgressManagerUtil.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/ProgressManagerUtil.java | [
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void addDirectory(JarOutputStream dst, String jarBaseName, File dir, int depth) throws IOException { File[] contents = dir.listFiles(); if(contents != null) { for(int i=0; i<contents.length; i++) { File f = contents[i]; String fBaseName = (depth==0) ? "" : dir.getName(); if(jarBaseName.length()>0) { fBaseName = jarBase... | void addDirectory(JarOutputStream dst, String jarBaseName, File dir, int depth) throws IOException { File[] contents = dir.listFiles(); if (contents != null) { for (int i = 0; i < contents.length; i++) { File f = contents[i]; String fBaseName = (depth == 0) ? "" : dir.getName(); if (jarBaseName.length() > 0) { fBaseNam... | void addDirectory(JarOutputStream dst, String jarBaseName, File dir, int depth) throws IOException { File[] contents = dir.listFiles(); if(contents != null) { for(int i=0; i<contents.length; i++) { File f = contents[i]; String fBaseName = (depth==0) ? "" : dir.getName(); if... | 53958 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53958/e10b40e8014547113799b2653164e8c990d41209/JarBuilder.java/buggy/src/contrib/streaming/src/java/org/apache/hadoop/streaming/JarBuilder.java | [
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new Thread(){ | Thread outThread = new Thread(){ | public void run () { try{ Runtime runtime = Runtime.getRuntime(); process = runtime.exec(args); final ByteArrayOutputStream out = new ByteArrayOutputStream(); final ByteArrayOutputStream err = new ByteArrayOutputStream(); new Thread(){ public void run (){ ... | 46034 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46034/0918fbb6aef3119e59ccb0f639429b69ffa88067/TaglistCommand.java/clean/src/java/org/eclim/command/taglist/TaglistCommand.java | [
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pc = getTarget(iCode, pc + 1); | if (instructionThreshold != 0) { instructionCount += pc + 3 - pcPrevBranch; if (instructionCount > instructionThreshold) { cx.observeInstructionCount (instructionCount); instructionCount = 0; } } pcPrevBranch = pc = getTarget(iCode, pc + 1); | public static Object interpret(Context cx, Scriptable scope, Scriptable thisObj, Object[] args, Scriptable fnOrScript, InterpreterData theData) throws JavaScriptException { int i; Object l... | 7555 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7555/5e9bc346cb971907d7a0541bae613e8b43b1238d/Interpreter.java/clean/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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AST __t793 = _t; AST tmp651_AST_in = (AST)_t; | AST __t797 = _t; AST tmp650_AST_in = (AST)_t; | public final void compilestate(AST _t) throws RecognitionException { AST compilestate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t780 = _t; AST tmp642_AST_in = (AST)_t; match(_t,COMPILE); _t = _t.getFirstChild(); filenameorvalue(_t); _t = _retTree; { _loop829: do { if (_t==null) _t=ASTNULL; swi... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/daa15e07422d3491bbbb4d0060450c81983332a4/TreeParser03.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparser03/TreeParser03.java | [
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AST tmp1334_AST_in = (AST)_t; | AST tmp1335_AST_in = (AST)_t; | public final void functionstate(AST _t) throws RecognitionException { AST functionstate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST f = null; AST id = null; AST __t853 = _t; f = _t==ASTNULL ? null :(AST)_t; match(_t,FUNCTION); _t = _t.getFirstChild(); id = (AST)_t; match(_t,ID); _t = _t.getNextSibling... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/865876f0e6319c071fef156818ff116c276cfdff/TreeParser01.java/buggy/trunk/org.prorefactor.core/src/org/prorefactor/treeparser01/TreeParser01.java | [
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public org.quickfix.field.EncodedTextLen getEncodedTextLen() throws FieldNotFound { org.quickfix.field.EncodedTextLen value = new org.quickfix.field.EncodedTextLen(); | public quickfix.field.EncodedTextLen getEncodedTextLen() throws FieldNotFound { quickfix.field.EncodedTextLen value = new quickfix.field.EncodedTextLen(); | public org.quickfix.field.EncodedTextLen getEncodedTextLen() throws FieldNotFound { org.quickfix.field.EncodedTextLen value = new org.quickfix.field.EncodedTextLen(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/SecurityTypes.java/buggy/src/java/src/quickfix/fix43/SecurityTypes.java | [
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iorString = args[0]; | System.err.println("Usage: java PrintIOR [ -i ior_str | -f filename ]"); System.exit( 1 ); } if( logger.isDebugEnabled() ) { logger.debug ( "Under " + System.getProperty ("os.name") + " the encoding name is " + System.getProperty( "file.encoding" ) + " and the canonical encoding name is " + ( new java.io.OutputStreamW... | public static void main(String args[]) { org.omg.CORBA.ORB orb = org.omg.CORBA.ORB.init(args,null); Logger logger = ((org.jacorb.orb.ORB)orb).getConfiguration().getNamedLogger("jacorb.print_ior"); String line, iorString = null; if( args.length < 1 || args.length > 2) ... | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/c6ea144bf43c912c7fd82de0de5e250f8b6c5950/PrintIOR.java/clean/src/org/jacorb/orb/util/PrintIOR.java | [
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if (entity.isChunked() || !entity.isRepeatable() ) { | if (!entity.isRepeatable() || entity.getContentLength() < 0) { | public BufferedHttpEntity(final HttpEntity entity) throws IOException { super(entity); if (entity.isChunked() || !entity.isRepeatable() ) { this.buffer = EntityUtils.toByteArray(entity); } else { this.buffer = null; } } | 47732 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47732/887cd0b4f6523066aa6a827abf3ca245373c9eaa/BufferedHttpEntity.java/buggy/src/java/org/apache/http/entity/BufferedHttpEntity.java | [
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public IStatus performQuery(AbstractRepositoryQuery query, IProgressMonitor monitor, IQueryHitCollector resultCollector) { if(query instanceof WebQuery) { String queryUrl = query.getUrl(); String regexp = ((WebQuery) query).getRegexp(); String taskPrefix = ((WebQuery) query).getTaskPrefix(); String repository... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/925c56cd29a486a51cfd56ee2c309ee45ca25183/WebRepositoryConnector.java/clean/sandbox/org.eclipse.mylyn.sandbox.ui/src/org/eclipse/mylyn/internal/sandbox/web/WebRepositoryConnector.java | [
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return ((high - MIN_HIGH_SURROGATE) << 10) + (low - MIN_LOW_SURROGATE); | return ((high - MIN_HIGH_SURROGATE) * 0x400) + (low - MIN_LOW_SURROGATE) + 0x10000; | public static int toCodePoint(char high, char low) { return ((high - MIN_HIGH_SURROGATE) << 10) + (low - MIN_LOW_SURROGATE); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/1b7948b90667ad6e59c157b1700e8034e8813d3a/Character.java/buggy/core/src/classpath/5.0/java/lang/Character.java | [
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if (jj_3R_103()) return true; | if (jj_3R_104()) return true; | final private boolean jj_3R_69() { if (jj_3R_103()) return true; Token xsp; while (true) { xsp = jj_scanpos; if (jj_3_26()) { jj_scanpos = xsp; break; } } return false; } | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/30dbed0065b5a20aa4e60ae16f7a8e47197c4cee/JavaParser.java/clean/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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void debugSessionTerminated() { | void debugSessionTerminated() { | void debugSessionTerminated() { shutdown();// Thread term = new Thread()// {// public void run()// {// shutdown();// }// };//// term.start();// return; } | 48756 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48756/3c3802a2d729ade92bfe215f545aff7a4fc13839/DebugTarget.java/clean/org.epic.debug/src/org/epic/debug/DebugTarget.java | [
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public boolean indexInfo(Value key, long pointer) { String word; try { word = new String(key.getData(), 2, key.getLength() - 2, "UTF-8"); } catch (UnsupportedEncodingException uee) { word = new String(key.getData(), 2, key.getLength() - 2); } if (matcher.matches(word, regexp)) { //Value value = dbW... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/59ca20fa7f3d75ce3217db0a6b9b6203354d1fa8/NativeTextEngine.java/buggy/src/org/exist/storage/NativeTextEngine.java | [
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l_Components[li_i] = i_Component_RowModels[li_i].cloneComponent(); l_Components[li_i].setComponentData(new TableComponentData(i_TableModel)); TableComponentData l_TableComponentData = (TableComponentData) l_Components[li_i].getComponentData(); | l_Components[li_index] = i_Component_RowModels[li_index].cloneComponent(); l_Components[li_index].setComponentData(new TableComponentData(i_TableModel)); TableComponentData l_TableComponentData = (TableComponentData) l_Components[li_index].getComponentData(); | private void updateComponentRow(int ai_index) { Component[] l_Components = (Component[]) iAL_TableComponentsInRow.get(ai_index - 1); if (l_Components != null && i_Component_RowModels != null && l_Components.length > 0 && i_Component_RowModels.length > 0) { if (l_Components.length != ii_tableComponent_ModelsSize) ... | 3284 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3284/e716faf352937a7f7ff23609707be2321403c856/Table.java/clean/source/netform/com/sohlman/netform/component/table/Table.java | [
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return new IBinding [] { new ProblemBinding( IProblemBinding.SEMANTIC_DEFINITION_NOT_FOUND, getNameCharArray() ) }; | IASTNode node = (declarations != null && declarations.length > 0) ? declarations[0] : null; return new IBinding [] { new ProblemBinding( node, IProblemBinding.SEMANTIC_DEFINITION_NOT_FOUND, getNameCharArray() ) }; | public IBinding[] getFriends() { if( definition == null ){ checkForDefinition(); if( definition == null ){ return new IBinding [] { new ProblemBinding( IProblemBinding.SEMANTIC_DEFINITION_NOT_FOUND, getNameCharArray() ) }; } } ObjectSet resultSet ... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/f25c314c0a69d3f0c40e3d587196c6e81e8718ff/CPPClassType.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/dom/parser/cpp/CPPClassType.java | [
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if (!theFile.canRead()) { /* Try adding the extension from the chosen filter. */ FileFilter ffilter = chooser.getFileFilter(); if (ffilter instanceof AbstractFilePersister) { AbstractFilePersister afp = (AbstractFilePersister) ffilter; File m = new File(theFile.getPath() + "." + afp.getExtension()); if (m.canRead()) { ... | if (!theFile.canRead()) { /* Try adding the extension from the chosen filter. */ FileFilter ffilter = chooser.getFileFilter(); if (ffilter instanceof AbstractFilePersister) { AbstractFilePersister afp = (AbstractFilePersister) ffilter; File m = new File(theFile.getPath() + "." + afp.getExtension()); if (m.canRead()) { ... | public void actionPerformed(ActionEvent e) { ProjectBrowser pb = ProjectBrowser.getInstance(); Project p = ProjectManager.getManager().getCurrentProject(); PersistenceManager pm = PersistenceManager.getInstance(); if (!ProjectBrowser.getInstance().askConfirmationAndSave()) { r... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/a038faf9f5f8ec0d052f96da0b2eee418ebc490e/ActionImportXMI.java/buggy/src_new/org/argouml/ui/ActionImportXMI.java | [
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public static List getElements(Element elem, String path) { List list = new ArrayList(); if (elem == null) return list; int ndx = path.indexOf("/"); if (ndx != -1) { Element child = getElement(elem, path.substring(0, ndx)); return getElements(child, path.substring(ndx + 1)); } NodeList nl = elem.getChildNo... | 48068 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48068/bcf54ee9560f4fd9a0ff083d3f0ea7c829a28aea/Util.java/buggy/contrib/tag-doc/src/java/org/apache/struts/taskdefs/Util.java | [
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public void indirection(org.omg.CORBA.TypeCode ref) { | public void indirection(org.omg.CORBA.TypeCode ref) { | public void indirection(org.omg.CORBA.TypeCode ref) { _ref = ref; _indirection = true; } | 12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/9d2c39c906c6955e17daf4ac239b85d4727ddc83/TypeCode.java/buggy/modules/interop/src/java/org/apache/geronimo/interop/rmi/iiop/TypeCode.java | [
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query.addAttribute(new FieldAttribute((String) displayIDs.get(i))); | query.addAttribute(new FieldAttribute((String) displayIDs.get(i), "_structure_dm")); | private void updateQuery() { query.addAttribute(new FieldAttribute(queryID)); query.addAttribute(new FieldAttribute(TranscriptID)); query.addAttribute(new FieldAttribute(Rank)); query.addAttribute(new FieldAttribute(AssemblyColumn)); query.addAttribute(new FieldAttribute(coordStart)); query.addAttribute(new Fiel... | 2000 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2000/5f169d5116dd82d0130adbd006da6dbd39733fc6/TranscriptFlankSeqQueryRunner.java/clean/src/java/org/ensembl/mart/explorer/TranscriptFlankSeqQueryRunner.java | [
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} else if (Character.isDigit(tmp.charAt(0))) { | } else if (Character.isDigit(tmp.charAt(0))) { | private String getClientName() { // This method is thread safe. String tmp; try { tmp = java.net.InetAddress.getLocalHost().getHostName(); } catch (java.net.UnknownHostException e) { tmp = ""; } StringTokenizer st = new StringTokenizer(tmp, "... | 439 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/439/082f6b97f424e9550bf490d66efbe1c288b8df9b/Tds.java/clean/trunk/jtds/src/main/net/sourceforge/jtds/jdbc/Tds.java | [
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private void initPage() throws DocumentException { // initialisation of some page objects annotations = delayedAnnotations; delayedAnnotations = new ArrayList(); pageResources = new PageResources(); writer.resetContent(); // the pagenumber is incremented ... | 3506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3506/4bd4e242c7a0a1b97338e3632ccdf4e1506186f8/PdfDocument.java/buggy/itext/src/com/lowagie/text/pdf/PdfDocument.java | [
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