rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
|---|---|---|---|---|---|---|
if (historyConfigurations == null) historyConfigurations = new LinkedList<Configuration>(); historyConfigurations.add(config); | addHistoryConfigurationToFront(config); | public void loadConfigurations(Element element) { if (configurations != null) return; List patterns = element.getChildren(); if (patterns!=null && patterns.size() > 0) { for (final Object pattern : patterns) { final Element childElement = (Element)pattern; final Configuration config = ... | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/89cd11decad19ffa2b802c17af5bee9a564095a0/ConfigurationManager.java/buggy/plugins/structuralsearch/source/com/intellij/structuralsearch/plugin/ui/ConfigurationManager.java | [
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assertEquals(person.getUsername(), "B12345"); | assertEquals(person.getUsername(), "B22222"); | public void testUsernameUpdate3() { Person person = new Person(username, nome, Gender.MALE, address, telefone, telemovel, enderecoWeb, email, numDocumentoIdentificacao, IDDocumentType.EXTERNAL); person.getStudents().add(degreeStudent); person.setGrantOwner(grantOwner); person.setEmployee(employee... | 2645 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2645/c6d1bdc95ab40de3e8799c948f22035b3be1847e/PersonTest.java/buggy/src_tests/net/sourceforge/fenixedu/domain/PersonTest.java | [
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return label.getText(); | return "displayName"; | public String getDisplayName() { if (title != null) { return title; } else { if (label == null) { if (logger.isInfoEnabled()) { logger.info("This labeled object's display name is not configured; returning 'displayName'"); } ... | 55916 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55916/970bcdd60ee0c816ab5b641ca1f14ae19799a842/LabeledObjectSupport.java/buggy/support/src/main/java/org/springframework/richclient/core/LabeledObjectSupport.java | [
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assert jdbcConnection != null; String cataLog = null; try { cataLog = jdbcConnection.getCatalog(); } catch( SQLException e) { e.printStackTrace(); } | String cataLog = null; if(jdbcConnection != null) { try { cataLog = jdbcConnection.getCatalog(); } catch( SQLException e) { e.printStackTrace(); } } | public String getCatalog() { assert jdbcConnection != null; String cataLog = null; try { cataLog = jdbcConnection.getCatalog(); } catch( SQLException e) { e.printStackTrace(); } return cataLog; } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/36800641160d096240db8eadceb1737ad3c81f51/JdbcMetaDataProvider.java/buggy/data/org.eclipse.birt.report.data.oda.jdbc.ui/src/org/eclipse/birt/report/data/oda/jdbc/ui/provider/JdbcMetaDataProvider.java | [
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final String query = (String)arg; if(!query.matches( "from "+clazz.getName()+".*" )) { | final String query = ((String)arg).trim(); final String shortName = GrailsClassUtils.getShortName(clazz); if(!query.matches( "from ["+clazz.getName()+"|"+shortName+"].*" )) { | protected Object doInvokeInternal(final Class clazz, String methodName, final Object[] arguments) { if(arguments.length == 0) return getHibernateTemplate().loadAll(clazz); final Object arg = arguments[0] instanceof GString ? arguments[0].toString() :arguments[0]; // if the arg is an instance of the class fi... | 55385 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55385/eba4c11a8af8d8f1d52696c4955af80d5c1b4e1d/FindAllPersistentMethod.java/clean/src/persistence/org/codehaus/groovy/grails/orm/hibernate/metaclass/FindAllPersistentMethod.java | [
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buf.append("# runners: ").append(numRunners); buf.append("<br />\n"); | buf.append("# runners: ").append(numRunners).append(" [states="); if (states != null) for (int i = 0; i < states.length; i++) buf.append(states[i]).append(" "); buf.append("]<br />\n"); | public void renderStatusHTML(Writer out) throws IOException { ArrayList readyJobs = null; ArrayList timedJobs = null; ArrayList activeJobs = new ArrayList(1); ArrayList justFinishedJobs = new ArrayList(4); out.write("<!-- jobQueue rendering -->\n"); out.flush(); sync... | 27433 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27433/6ef22166f97d655b56ae3ef97650d494ac89f3d8/JobQueue.java/buggy/router/java/src/net/i2p/router/JobQueue.java | [
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if (result != null && result.unscheduleFiringTrigger()) return INSTRUCTION_SET_TRIGGER_COMPLETE; | if (result != null && result.unscheduleFiringTrigger()) { return INSTRUCTION_SET_TRIGGER_COMPLETE; } | public int executionComplete(JobExecutionContext context, JobExecutionException result) { if (result != null && result.refireImmediately()) return INSTRUCTION_RE_EXECUTE_JOB; if (result != null && result.unscheduleFiringTrigger()) return INSTRUCTION_SET_TRIGGER... | 15562 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15562/f6eeea5a952e67d6b7fc8b54ae64d0b9e7098a98/CronTrigger.java/clean/src/java/org/quartz/CronTrigger.java | [
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final StructureViewBuilder structureViewBuilder = AntFileStructureList.canShowFor(psiFile) ? null : fileEditor.getStructureViewBuilder(); | public void actionPerformed(AnActionEvent e) { DataContext dataContext = e.getDataContext(); Project project = (Project)dataContext.getData(DataConstants.PROJECT); final Editor editor = (Editor)dataContext.getData(DataConstants.EDITOR); final FileEditor fileEditor = (FileEditor)dataContext.getData(DataCon... | 56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/89060901a027aeca4e23035014f3951f8d11a976/ViewStructureAction.java/clean/action-system/impl/com/intellij/ide/actions/ViewStructureAction.java | [
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throw cx.reportRuntimeError0("msg.bad.uri"); | throw Context.reportRuntimeError0("msg.bad.uri"); | private static String decode(Context cx, String str, boolean fullUri) { char[] buf = null; int bufTop = 0; for (int k = 0, length = str.length(); k != length;) { char C = str.charAt(k); if (C != '%') { if (buf != null) { buf[bufTop++] = C;... | 13991 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13991/4ad826a35e76cb27011d7ce32f9515c2d80a93c0/NativeGlobal.java/clean/js/rhino/src/org/mozilla/javascript/NativeGlobal.java | [
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return UNCHANGED; | return DefUseEffect.UNCHANGED; | private static byte longRem(OPT_Instruction s) { if (CF_LONG) { OPT_Operand op1 = GuardedBinary.getVal1(s); OPT_Operand op2 = GuardedBinary.getVal2(s); if (op1.similar(op2)) { // THE SAME OPERAND: x % x == 0 Move.mutate(s, LONG_MOVE, GuardedBinary.getClearResult(s), ... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/4f52a59569c48e68010a63e605ee6691083a9e97/OPT_Simplifier.java/buggy/rvm/src/com/ibm/jikesrvm/opt/OPT_Simplifier.java | [
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return isMale ? MALE_ROOTS : FEM_ROOTS; | return isMale ? MALE_ROOT_TABLE : FEMALE_ROOT_TABLE; | public HashSet<String> getHandleRoots (boolean isMale) { return isMale ? MALE_ROOTS : FEM_ROOTS; } | 8059 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8059/eb874d970395faebbab862fd6cfb9f883b9376c2/EnglishNameCreator.java/buggy/src/java/com/threerings/bang/util/EnglishNameCreator.java | [
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repository.deleteNode(url); | repository.deleteNode(cus.getPrimaryUrl()); | private void deleteNode(CachedUrlSet cus) throws IOException { // delete the node from the LockssRepository String url = getCusKey(cus); //XXX change to get from RunDaemon LockssRepository repository = LockssRepositoryImpl.repositoryFactory(cus.getArchivalUnit()); repository.deleteNode(url); } | 8150 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8150/b29f815557f9c3fa7484586ed261f7f89c6f9b94/NodeManagerImpl.java/buggy/src/org/lockss/state/NodeManagerImpl.java | [
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System.out.println("Usage: jruby [switches] [rubyfile.rb] [arguments]"); | System.out.println("Usage: jruby [switches] [--] [rubyfile.rb] [arguments]"); | public static void printUsage() { if (!hasPrintedUsage) { System.out.println("Usage: jruby [switches] [rubyfile.rb] [arguments]"); System.out.println(" -e 'command' one line of script. Several -e's allowed. Omit [programfile]"); System.out.println(" -b b... | 45753 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45753/16c7b13e57125972e8fd90d0bd5f43154e2c7c64/Main.java/buggy/src/org/jruby/Main.java | [
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if (null != myLTwine) { result = (Twine)result.add(myLTwine.run(0, pos)); | if (!isEndOfFile()) { result = (Twine)result.add(myOptLTwine.run(0, pos)); | protected Twine endToken() { Twine result; int pos = myPos; if (myDelayedNextChar) { pos++; } if (-1 == myOptStartPos) { if (null == myOptStartText) { throw new Error("internal: no current token"); } else { //started o... | 48789 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48789/af71dd5e60fa6fae852742974376b299a828a3d5/BaseLexer.java/buggy/src/jsrc/org/quasiliteral/syntax/BaseLexer.java | [
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public void setFocus() {} | public void setFocus() { _parent.setFocus(); } | public void setFocus() {} | 8133 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8133/6f9fe24baac685c670373f1639f535050dee614b/ByecycleView.java/clean/byecycle/src/byecycle/views/ByecycleView.java | [
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Node.Target catchTarget = tryNode.target; | Node catchTarget = tryNode.target; | private void visitStatement(Node node) { int type = node.getType(); Node child = node.getFirstChild(); switch (type) { case Token.FUNCTION: { int fnIndex = node.getExistingIntProp(Node.FUNCTION_PROP); int fnType = scriptOrFn.getFunctionNode(f... | 54155 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54155/bef182034b96d54a2938fe141217e83b8644cf25/Interpreter.java/clean/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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public PacketBuilder(I2PAppContext ctx) { | public PacketBuilder(I2PAppContext ctx, UDPTransport transport) { | public PacketBuilder(I2PAppContext ctx) { _context = ctx; _log = ctx.logManager().getLog(PacketBuilder.class); } | 3808 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3808/55869af2cc954f7a0f712946337c63f1e58b1848/PacketBuilder.java/buggy/router/java/src/net/i2p/router/transport/udp/PacketBuilder.java | [
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public abstract boolean jdbcCompliant(); | boolean jdbcCompliant(); | public abstract boolean jdbcCompliant(); | 45713 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45713/b37b39a8e8ee762cc74efa7e8d06368d13147150/Driver.java/clean/libraries/javalib/java/sql/Driver.java | [
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il.append(new INVOKEINTERFACE(iter, 4)); | il.append(new INVOKEINTERFACE(iter, 5)); | public void translatePredicates(ClassGenerator classGen, MethodGenerator methodGen) { final ConstantPoolGen cpg = classGen.getConstantPool(); final InstructionList il = methodGen.getInstructionList(); if (_predicates.size() == 0) { translate(classGen, methodGen); } else { final Predicate predicate = ... | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/3b76ccf0fb42918c762d62aa3697cbd60b3a686c/Step.java/clean/src/org/apache/xalan/xsltc/compiler/Step.java | [
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if (result == null) throw new IllegalArgumentException("The value '" + initialValue + "' is not a valid enumerator of '" + eDataType.getName() + "'"); | if (result == null) throw new IllegalArgumentException("The value '" + initialValue + "' is not a valid enumerator of '" + eDataType.getName() + "'"); | public Object createFromString(EDataType eDataType, String initialValue) { switch (eDataType.getClassifierID()) { case AttributePackage.ACTION_TYPE: { ActionType result = ActionType.get(initialValue); if (result == null) throw new IllegalArgumentE... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/e5c78f0e8317166d02fa384e14c3dd7aa1796f2c/AttributeFactoryImpl.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/attribute/impl/AttributeFactoryImpl.java | [
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public WebScarab(String[] args) { initComponents(); // capture STDOUT and STDERR to a TextArea System.setOut(redirectOutput(stdoutTextArea, System.out)); System.setErr(redirectOutput(stderrTextArea, System.err)); // create the framework _framework = new Framework();... | 31053 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31053/3ebea7ac31ac48e7c305fa8635f5721dca828c7b/WebScarab.java/clean/src/org/owasp/webscarab/ui/swing/WebScarab.java | [
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throwRuntimeException( new IllegalArgumentException("Call to [like] with propertyName ["+propertyName+"] and value ["+value+"] not allowed here.")); | throwRuntimeException( new IllegalArgumentException("Call to [like] with propertyName ["+propertyName+"] and value ["+propertyValue+"] not allowed here.")); | public Object like(String propertyName, Object value) { if(!validateSimpleExpression()) { throwRuntimeException( new IllegalArgumentException("Call to [like] with propertyName ["+propertyName+"] and value ["+value+"] not allowed here.")); } propertyName = calculatePropertyName(proper... | 53275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53275/12958fa968d7d1cc5e7d50ea77bddfc3d0a294ab/HibernateCriteriaBuilder.java/clean/src/commons/grails/orm/HibernateCriteriaBuilder.java | [
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Assert.notNull(key, "Key cannot be null"); | Assert.notNull(key, "Key cannot be null"); | public void setDefaultLong(String key, long value) { Assert.notNull(key, "Key cannot be null"); defaults.put(key, String.valueOf(value)); } | 55916 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55916/1ca92818155f3e0a4aed29e15c396b3c749e2b10/AbstractSettings.java/clean/sandbox/src/org/springframework/richclient/settings/AbstractSettings.java | [
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String className = _context.router().getConfigSetting("clientApp."+i+".main"); String clientName = _context.router().getConfigSetting("clientApp."+i+".name"); String args = _context.router().getConfigSetting("clientApp."+i+".args"); String onBoot = _context.router().getConfigSetting("clientApp." + i + ".onBoot"); | String className = getContext().router().getConfigSetting("clientApp."+i+".main"); String clientName = getContext().router().getConfigSetting("clientApp."+i+".name"); String args = getContext().router().getConfigSetting("clientApp."+i+".args"); String onBoot = getContext().router().getConfigSetting("clientApp." + i + "... | public void runJob() { int i = 0; while (true) { String className = _context.router().getConfigSetting("clientApp."+i+".main"); String clientName = _context.router().getConfigSetting("clientApp."+i+".name"); String args = _context.router().getConfigSetting("clientApp."... | 27493 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27493/e737e5c9507ed0d463dc9e45a8f63657f466b177/LoadClientAppsJob.java/clean/router/java/src/net/i2p/router/startup/LoadClientAppsJob.java | [
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protected boolean queryLookaheadCapability(int count) throws EndOfFileException { | protected boolean queryLookaheadCapability(int count) throws EndOfFileException { | protected boolean queryLookaheadCapability(int count) throws EndOfFileException { //make sure we can look ahead one before doing this boolean result = true; try { LA(count); } catch( EndOfFileException olre ) { result = false; } return result; } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/85be18a5f9556c1b23f600ca12f088a1d51d3925/ExpressionParser.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/ExpressionParser.java | [
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FileServlet.getRootDir(config); | servlet.getRootDir(config); | public void testGetRootDir() { MockServletConfig config = new MockServletConfig(); MockServletContext context = new MockServletContext(); config.setServletContext(context); try { FileServlet.getRootDir(config); fail("should have exception when required attri... | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/17cec38391bdc70d4108f9ed9c2c284a5dd98540/FileServletTest.java/clean/reporting/jsp/test/net/sourceforge/cruisecontrol/servlet/FileServletTest.java | [
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PKIXCertPath( InputStream inStream, String encoding) throws CertificateException | PKIXCertPath( List certificates ) | PKIXCertPath( InputStream inStream, String encoding) throws CertificateException { super("X.509"); try { if (encoding.equalsIgnoreCase( "PkiPath" )) { ASN1InputStream derInStream = new ASN1InputStream(inStream); DERObject derO... | 53000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53000/4cee3517cdacb9d4c0cd8fc3a9ed3a63e9478db2/PKIXCertPath.java/buggy/crypto/jdk1.1/org/bouncycastle/jce/provider/PKIXCertPath.java | [
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if (experiment.isEditable()) experiment.setEditInProgress(true); | experiment.setEditInProgress(true); | public ExperimentBuilder(CSMART csmart, Experiment experiment) { this.csmart = csmart; createLogger(); setExperiment(experiment); JMenuBar menuBar = new JMenuBar(); getRootPane().setJMenuBar(menuBar); JMenu fileMenu = new JMenu(FILE_MENU); fileMenu.setToolTipText("Configure hosts and nodes, save,... | 9368 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9368/3b495e9c9e5cf3c9a2f6306461c98492ad8b0907/ExperimentBuilder.java/buggy/csmart/src/org/cougaar/tools/csmart/ui/experiment/ExperimentBuilder.java | [
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Connection conn = org.jasig.portal.RDBMServices.getConnection(); | conn = org.jasig.portal.RDBMServices.getConnection(); | protected void deleteTestGroups(){ String sql = " FROM UP_GROUP WHERE ENTITY_TYPE_ID = " + EntityTypes.getEntityTypeID(TEST_ENTITY_CLASS); String selectSql = "SELECT GROUP_ID" + sql; String deleteSql = "DELETE" + sql; String deleteMemberSql = "DELETE FROM UP_GROUP_MEMBERSHIP WHERE GROUP... | 1895 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1895/9d3b456b59e8b5cc29f297a11e6797a8e4102d31/GroupsTester.java/clean/tests/org/jasig/portal/groups/GroupsTester.java | [
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exceptionTypeSet.addImplicit(Hierarchy.ERROR_TYPE); | CachedExceptionSet cachedExceptionSet = getCachedExceptionSet(basicBlock); if (cachedExceptionSet.isUpToDate((TypeFrame) result)) return; | private ExceptionSet computeThrownExceptionTypes(BasicBlock basicBlock) throws ClassNotFoundException, DataflowAnalysisException { ExceptionSet exceptionTypeSet = exceptionSetFactory.createExceptionSet(); InstructionHandle pei = basicBlock.getExceptionThrower(); Instruction ins = pei.getInstruction(); // G... | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/170bfe37c4fa013361c92e1c635f9623fd15e85e/TypeAnalysis.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/ba/type/TypeAnalysis.java | [
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count = new IntField(countTag, 1); | count = new StringField(countTag, "1"); | private void setGroupCount(int countTag, int groupSize) { try { IntField count; if (groupSize == 1) { count = new IntField(countTag, 1); setField(countTag, count); } else { count = getIntField(countTag); } cou... | 52526 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52526/cef58b9915bca1229085d00c3cf25481dfa7b62f/FieldMap.java/buggy/src/quickfix/FieldMap.java | [
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match(input,RPAREN,FOLLOW_RPAREN_in_statement1370); | match(input,RPAREN,FOLLOW_RPAREN_in_statement1370); | public void statement() throws RecognitionException { try { // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:336:17: ( compoundStatement | declaration SEMI | expression SEMI | modifiers classDefinition | IDENT COLON statement | '... | 5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/024138fd0e08f5f4cd91a30959fe962d30fec435/JavaParser.java/buggy/drools-compiler/src/main/java/org/drools/semantics/java/parser/JavaParser.java | [
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public CmsUser createUser(CmsDbContext dbc, String name, String password, String description, String firstname, String lastname, String email, long lastlogin, int flags, Map additionalInfos, String address, int type) throws CmsDataAccessException, CmsPasswordEncryptionException { | public CmsUser createUser( CmsDbContext dbc, String name, String password, String description, String firstname, String lastname, String email, long lastlogin, int flags, Map additionalInfos, String address, int type) throws CmsDataAccessException, CmsPasswordEncryptionException { | public CmsUser createUser(CmsDbContext dbc, String name, String password, String description, String firstname, String lastname, String email, long lastlogin, int flags, Map additionalInfos, String address, int type) throws CmsDataAccessException, CmsPasswordEncryptionException { CmsUUID id = new CmsUUID... | 8585 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8585/546c122e43ad901e06bfec1c2164259c3ce08c8b/CmsUserDriver.java/buggy/src/org/opencms/db/mysql/CmsUserDriver.java | [
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data = context.popNumberOperands(1); context.operands.push(new Long(Math.round(data[0]))); | data = context.popOperands(2); if (! (data[0] instanceof ArrayList)) { throw new PainterException("forall: wrong arguments"); } if (! (data[1] instanceof PAToken)) { throw new PainterException("forall: wrong arguments"); } patoken = (PAToken) data[1]; if (! (patoken.type == PAToken.PROCEDURE)) { throw new PainterExcep... | public void execute(PAContext context) throws PainterException { double data[]; data = context.popNumberOperands(1); context.operands.push(new Long(Math.round(data[0]))); } | 3506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3506/daa5304636a08f20e2545b070a8a5d968b0ebfb8/PAContext.java/buggy/itext/src/com/lowagie/text/pdf/codec/postscript/PAContext.java | [
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return RubyFixnum.newFixnum(getRuntime(), pos); | return getRuntime().newFixnum(pos); | public IRubyObject rewind() { pos = 0; return RubyFixnum.newFixnum(getRuntime(), pos); } | 46217 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46217/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyDir.java/clean/src/org/jruby/RubyDir.java | [
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public double getDoubleVal() { return doubleVal; } | double getDoubleVal(); | public double getDoubleVal() { return doubleVal; } | 22724 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/22724/15c086cfad17b485a7454e3685abf8c8e3d26e8e/PropertySetItem.java/buggy/src/java/com/opensymphony/module/propertyset/hibernate/PropertySetItem.java | [
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for (x1 = 0; x1 < nrOfAtoms; x1++) | boolean changed = false; for (int x1 = 0; x1 < nrOfAtoms; x1++) | public Vector sample(AtomContainer ac) { if(debug) System.out.println("RandomGenerator->mutate() Start"); Vector structures = new Vector(); int nrOfAtoms = ac.getAtomCount(); int x1 = 0, x2 = 0, y1 = 0, y2 = 0; double a11 = 0, a12 = 0, a22 = 0, a21 = 0; double b11 = 0, lowerborder = 0, upperborder = 0; double b... | 45167 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45167/ca9db41656206b7597dd3a7637c0f7687f2bddba/VicinitySampler.java/clean/org/openscience/cdk/structgen/VicinitySampler.java | [
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Logger.log(Logger.INFO_DEBUG, "Model lock released early" + fLockObject + " apparently document switched?"); | if (Logger.DEBUG) { Logger.log(Logger.INFO_DEBUG, "Model lock released early" + fLockObject + " apparently document switched?"); } | private void beginLock() { // if we get a different lock object // than we had before, besure to release // old one first before losing it. // ISSUE: this smells like an error condition, // when would this happen? better to check in set document? ILock documentLock = getLockObjectFromDocument(); if (fLockObject... | 13989 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13989/636ad18990a6f580780790ba2ec581e3f7cfaf48/AbstractStructuredModel.java/clean/bundles/org.eclipse.wst.sse.core/src/org/eclipse/wst/sse/core/internal/model/AbstractStructuredModel.java | [
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if (result) | if (result) { | public final void setResult(final boolean result) { if (result) evaluationResult = EvaluationResult.TRUE; else evaluationResult = EvaluationResult.FALSE; } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/fa4a8cff0e027f8d3c6b1fcb92b30f46767dd191/EvaluationResultCache.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/services/EvaluationResultCache.java | [
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if (_tagId == ID_NOT_FOUND) { name = "NOT_FOUND"; } else if (_tagId == ID_NULL_VALUE) { name = "NULL_VALUE"; } else { Kit.codeBug(); name = null; } | switch (tagId) { case ID_NOT_FOUND: name = "NOT_FOUND"; break; case ID_NULL_VALUE: name = "NULL_VALUE"; break; case ID_DOUBLE_MARK: name = "DOUBLE_MARK"; break; default: throw Kit.codeBug(); } | public String toString() { String name; if (_tagId == ID_NOT_FOUND) { name = "NOT_FOUND"; } else if (_tagId == ID_NULL_VALUE) { name = "NULL_VALUE"; } else { Kit.codeBug(); name = null; } return super.toString()+": "+name; } | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/4f61cba96eb5b3b4c9a2b86d1d7ac62350bcd582/UniqueTag.java/buggy/js/rhino/src/org/mozilla/javascript/UniqueTag.java | [
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final PsiElement classNameIdentifier = descriptor.getPsiElement(); final PsiClass psiClass = (PsiClass) classNameIdentifier.getParent(); final PsiManager psiManager = PsiManager.getInstance(project); final PsiElementFactory factory = psiManager.getElementFactory(); final PsiMethod constructor = factory.createConstructo... | final PsiElement classNameIdentifier = descriptor.getPsiElement(); final PsiClass psiClass = (PsiClass) classNameIdentifier .getParent(); final PsiManager psiManager = PsiManager.getInstance(project); final PsiElementFactory factory = psiManager.getElementFactory(); final PsiMethod constructor = factory.createConstruct... | public void doFix(Project project, ProblemDescriptor descriptor) throws IncorrectOperationException{ final PsiElement classNameIdentifier = descriptor.getPsiElement(); final PsiClass psiClass = (PsiClass) class... | 56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/bd57f07c33c419f20715b114b71a7e93425b34c9/UtilityClassWithoutPrivateConstructorInspection.java/clean/plugins/InspectionGadgets/src/com/siyeh/ig/classlayout/UtilityClassWithoutPrivateConstructorInspection.java | [
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for (int i = 0; i < statList.size(); i++) { | for (int i = 0; i < sl.size(); i++) { | public void setPc(PlayerCharacter pc) { this.pc = pc; setVisible(true); StatList sl = pc.getStatList(); List statList = sl.getStats(); for(int i = 0; i < attrList.size(); i++) { Attribute attr = (Attribute)attrList.get(i); attr.destruct(); } attrList.clear(); for (int i = 0; i < statList.size(); i++) { A... | 48301 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48301/eb5f93299afbba8e2b27cdc67dfddc016c5d86a9/AttributePane.java/clean/code/src/java/plugin/charactersheet/gui/AttributePane.java | [
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notificationHandler.logRevision(revision); | notificationHandler.logRevision(revision, path); | public void onNotify( String path, int action, int kind, String mimeType, int contentState, int propState, long revision) { // we only call notifyListenersOfChange and logRevision // logMessage and logCompleted have already been called ... | 6016 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6016/166f3651101ab7f39c5b4b99f46a9cd3d72d145a/SvnCommandLine.java/clean/svnClientAdapter/src/main/org/tigris/subversion/svnclientadapter/commandline/SvnCommandLine.java | [
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public LineArea(int alignment, int diff, int stretch, int shrink) { adjustingInfo = new LineAdjustingInfo(alignment, diff, stretch, shrink); | public LineArea() { | public LineArea(int alignment, int diff, int stretch, int shrink) { adjustingInfo = new LineAdjustingInfo(alignment, diff, stretch, shrink); } | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/0b2bc38c8fb83a2f90be1e11b3f0ab2889ac5a7c/LineArea.java/buggy/src/java/org/apache/fop/area/LineArea.java | [
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WebBrowserDialog.openAcceptAgreement(this.getSite().getShell(), "Failed to submit to repository", event.getJob().getResult() .getMessage(), event.getJob().getResult().getException().getMessage()); | WebBrowserDialog.openAcceptAgreement(this.getSite().getShell(), "Failed to submit to repository", event .getJob().getResult().getMessage(), event.getJob().getResult().getException().getMessage()); | protected void handleSubmitError(final IJobChangeEvent event) { if (event.getJob().getResult().getCode() == Status.INFO) { WebBrowserDialog.openAcceptAgreement(this.getSite().getShell(), "Failed to submit to repository", event.getJob().getResult() .getMessage(), event.getJob().getResult().getException().getMess... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/b25558c004f8e0aff40df62e88d40b378ab073da/AbstractRepositoryTaskEditor.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasks/ui/editors/AbstractRepositoryTaskEditor.java | [
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catch (SQLException e) | catch (Exception e) | public void commitTx(Transaction tx) throws Exception { if (log.isTraceEnabled()) { log.trace("updating database for committing transaction " + tx); } Connection conn = null; PreparedStatement ps = null; TransactionWrapper wrap = new TransactionWrapper(); try { conn = ds... | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/b808cf059a2bd5d2b256a4cae82cef505669b216/JDBCPersistenceManager.java/buggy/src/main/org/jboss/messaging/core/persistence/JDBCPersistenceManager.java | [
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newBufAddr = VM_Address.fromInt(VM.sysCall1(VM_BootRecord.the_boot_record.sysMallocIP, WRITE_BUFFER_SIZE)); | VM_Address newBufAddr = VM_Address.fromInt(VM.sysCall1(VM_BootRecord.the_boot_record.sysMallocIP, WRITE_BUFFER_SIZE)); | static void growWriteBuffer ( ) { VM_Address newBufAddr; VM_Processor vp = VM_Processor.getCurrentProcessor(); if (VM.VerifyAssertions) VM.assert(vp.modifiedOldObjectsTop==vp.modifiedOldObjectsMax); newBufAddr = VM_Address.fromInt(VM.sysCall1(VM_BootRecord.the_boot_record.sysMallocIP, WRITE_BUF... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/01d318a2ca2371456252cf870d524ff8f858d4f5/VM_WriteBuffer.java/clean/rvm/src/vm/memoryManagers/watson/common/barriers/VM_WriteBuffer.java | [
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releaseLock(conn, LOCK_TRIGGER_ACCESS, transOwner); closeConnection(conn); | try { releaseLock(conn, LOCK_TRIGGER_ACCESS, transOwner); } finally { closeConnection(conn); } | public boolean removeJob(SchedulingContext ctxt, String jobName, String groupName) throws JobPersistenceException { Connection conn = getConnection(); boolean transOwner = false; try { getLockHandler().obtainLock(conn, LOCK_TRIGGER_ACCESS); transOwner = true; ... | 55677 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55677/24a1487e362febf7eeb1be9cd4c7b48ba29ecfed/JobStoreCMT.java/clean/src/java/org/quartz/impl/jdbcjobstore/JobStoreCMT.java | [
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tiFilePreview.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { spoonlog.preview(); }}); | tiFileRun.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { tabfolder.setSelection(1); spoonlog.startstop(); }}); | tiFilePreview.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { spoonlog.preview(); }}); | 9547 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9547/2ec49065645641cf193aa2ca54e8173eea794745/Spoon.java/clean/src/be/ibridge/kettle/spoon/Spoon.java | [
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if (hVars != null) { sReturn += "\t\tVars:\n"; for (Iterator i = hVars.keySet().iterator(); i.hasNext(); ) { Object key = i.next(); sReturn += "\t\t\t" + key + "=" + hVars.get(key) + "\n"; | if (hVars != null) { results.append("\t\tVars:\n"); for (Iterator i = hVars.keySet().iterator(); i.hasNext(); ) { Object key = i.next(); results.append("\t\t\t"); results.append(key); results.append("="); results.append(hVars.get(key)); results.append("\n"); | public String toString() { String sReturn = "\t\tkey= " + key + "\n" + "\t\tproperty= " + property + "\n" + "\t\tindexedProperty= " + indexedProperty + "\n" + "\t\tindexedListProperty= " + indexedListProperty ... | 8610 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8610/b46b80722aa3bfd3779e3cdcfc04a7ee9f1aaa6a/Field.java/clean/validator/src/share/com/wintecinc/struts/validation/Field.java | [
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r.append( (char) ' ' ); | r.append( ' ' ); | toString() { StringBuffer r = new StringBuffer(30); r.append('['); int i = Math.min( nWords-1, data.length-1) ; if ( nWords > data.length ){ r.append( "("+data.length+"<"+nWords+"!)" ); } for( ; i> 0 ; i-- ){ r.append( Integer.toHexString( data[i] ) ); r.append( (char) ' ' ); } r.append( Integer.toHexStr... | 51263 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51263/8e013641bda80bdee1cf75aedaf4e5e30c10ffab/Format.java/clean/src/main/mondrian/util/Format.java | [
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GridBagConstraints _constraints = new GridBagConstraints(); | public ImRManagerGUI() { super("ImR Manager"); m_handler = new EventHandler(); m_model = new ImRModel(); try { UIManager.setLookAndFeel(UIManager.getCrossPlatformLookAndFeelClassName()); } catch (Exception e) { } GridBagConstraints _constraints = new GridBagConstraints(); //Build m... | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/67f3a7e837a7e03a1d019829da4a65c652e35508/ImRManagerGUI.java/clean/src/org/jacorb/imr/util/ImRManagerGUI.java | [
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{ String attrs = parseEncodedString(); if (SanityManager.DEBUG) trace("sqlattr = '" + attrs+"'"); | { String attrs = parseEncodedString(); if (SanityManager.DEBUG) trace("sqlattr = '" + attrs+"'"); | protected void parseSQLATTR(DRDAStatement stmt) throws DRDAProtocolException { String attrs = parseEncodedString(); if (SanityManager.DEBUG) trace("sqlattr = '" + attrs+"'"); //let Cloudscape handle any errors in the types it doesn't support //just set the attributes boolean validAttribute = false; if (attrs.i... | 56322 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56322/9ab36fe5be3632bbd1703a025618a585f0db4a57/DRDAConnThread.java/buggy/java/drda/org/apache/derby/impl/drda/DRDAConnThread.java | [
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Set findSummonableAngels(String markerId) | synchronized Set findSummonableAngels(String markerId) | Set findSummonableAngels(String markerId) { Legion legion = getLegionByMarkerId(markerId); Set set = new HashSet(); java.util.List legions = legion.getPlayer().getLegions(); synchronized (legions) { Iterator it = legions.iterator(); while (it.hasNext()) ... | 51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/8d1ec51f9e7290b8276a6f9e736af457e9465186/Game.java/buggy/Colossus/net/sf/colossus/server/Game.java | [
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if (!(indexStorage instanceof CIndexStorage)) return false; SimpleLookupTable headerTable = ((CIndexStorage)indexStorage).getEncounteredHeaders(); | SimpleLookupTable headerTable = indexStorage.getEncounteredHeaders(); | public synchronized boolean haveEncounteredHeader(IPath projectPath, IPath filePath) { if (!(indexStorage instanceof CIndexStorage)) return false; SimpleLookupTable headerTable = ((CIndexStorage)indexStorage).getEncounteredHeaders(); // Path is already canonical per construction ObjectSet headers = (Obj... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/39e465b9a81448b2c5173d9c6ff22478bd4ceb4f/SourceIndexer.java/buggy/core/org.eclipse.cdt.core/index/org/eclipse/cdt/internal/core/index/sourceindexer/SourceIndexer.java | [
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SimThread simThread = new SimThread( new TransactionScanner( )); simThread.setName("TransactionScanner"); simThread.start(); | SimThread simThread = new SimThread( new TransactionScanner( )); simThread.setName("TransactionScanner"); simThread.start(); | protected SIPTransactionStack() { super(); this.transactionTableSize = -1; // a set of methods that result in dialog creation. this.dialogCreatingMethods = new HashSet(); // Standard set of methods that create dialogs. this.dialogCreatingMethods.add(Request.REFER); this.dialogCreatingMethods.add(Request.INVITE)... | 3364 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3364/0cf0af6bd3a566b6ef1db8ed90955fa3fc3baccc/SIPTransactionStack.java/buggy/src/gov/nist/javax/sip/stack/SIPTransactionStack.java | [
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public void onClick(String name, Point point) { // check minimap if (name.equals("minimap")) { // minimap disabled? if (minimapEnabled) { minimap.close(); minimap = null; minimapEnabled = false; // be sure to update the button buttonMap.get(name).setPressed(false); } else if (!minimapEnabled) { ... | 4438 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4438/7e8878e23220e6dc60e3821623b4fc41c210a573/SettingsPanel.java/clean/src/games/stendhal/client/gui/wt/SettingsPanel.java | [
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return "Serves as an introduction to the Align package for Mesquite."; | return "Align is a Mesquite package providing tools for the alignment of sequence data."; | public String getExplanation() { return "Serves as an introduction to the Align package for Mesquite."; } | 57538 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57538/19a720ade28f0f4bbdaf4fa108bff2a34416a578/aAlignIntro.java/clean/trunk/Mesquite Project/Source/mesquite/align/aAlignIntro/aAlignIntro.java | [
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xactor.GetTextProperty().SetColor(0.0, 0.0, 0.0); | xactor.GetTextProperty().SetColor(1.0, 1.0, 1.0); | public void createAxes() { vtkAxes axes = new vtkAxes(); axes.SetOrigin(0, 0, 0); axes.SetScaleFactor(axisLength); xactor = new vtkTextActor(); yactor = new vtkTextActor(); zactor = new vtkTextActor(); xactor.SetInput("X"); yactor.SetInput("Y"); zactor.SetInput("Z"); xactor.ScaledTextOn(... | 47063 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47063/78c9816548cc34acc595dcb3c23692b7344e8d5c/AxesActor.java/clean/Wrapping/Java/AxesActor.java | [
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Class c = ((NativeJavaClass) args[i]).getClassObject(); | Class c = ((NativeJavaClass) arg).getClassObject(); | static Object js_createAdpter(Context cx, Scriptable scope, Object[] args) { Class superClass = null; Class[] intfs = new Class[args.length-1]; int interfaceCount = 0; for (int i=0; i < args.length-1; i++) { if (!(args[i] instanceof NativeJavaClass)) { throw ... | 12564 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12564/40f7554390dea10ea64bd490d09230d2c0814929/JavaAdapter.java/clean/src/org/mozilla/javascript/JavaAdapter.java | [
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if (isConvex()) | if (isConvex()) { | public region convexHull() { region ret; if (isConvex()) ret = this; else { region[] dims = new region[rank]; for (int i = 0; i < rank; ++i) { if (dims_[i].isConvex()) dims[i] = dims_[i]; else ... | 1832 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1832/cc3652a4dd66a6aae52c6eb545a36943c1c64546/MultiDimRegion.java/clean/x10.runtime/src/x10/array/MultiDimRegion.java | [
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static private final int jjMoveStringLiteralDfa4_2(long old0, long active0) { if (((active0 &= old0)) == 0L) return jjStartNfa_2(2, old0, 0L); try { curChar = input_stream.readChar(); } catch (java.io.IOException e) { jjStopStringLiteralDfa_2(3, active0, 0L); return 4; } switch (curChar) { case 97: return jjMoveStringL... | static private final int jjMoveStringLiteralDfa4_2(long old0, long active0) { if (((active0 &= old0)) == 0L) return jjStartNfa_2(2, old0, 0L); try { curChar = input_stream.readChar(); } catch(java.io.IOException e) { jjStopStringLiteralDfa_2(3, active0, 0L); return 4; } switch(curChar) { case 97: return jjMoveStringLit... | static private final int jjMoveStringLiteralDfa4_2(long old0, long active0) { if (((active0 &= old0)) == 0L) return jjStartNfa_2(2, old0, 0L); try { curChar = input_stream.readChar(); } catch (java.io.IOException e) { jjStopStringLiteralDfa_2(3, active0, 0L); ... | 7954 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7954/3cbef97c5dee07422d7e9cdf6b2f9304448a9eee/ExpressionParserTokenManager.java/clean/aspectwerkz3/src/main/org/codehaus/aspectwerkz/expression/ast/ExpressionParserTokenManager.java | [
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String sub = token.substring(1); | String sub = token.trim(); | void parse () { String delim = TAB_SEPARATOR; StringTokenizer st = new StringTokenizer(line, delim); for (int state = 0; st.hasMoreTokens(); state++) { String token = st.nextToken(delim); switch (state) { case 0: // TAG_NAME: tagName = token; break; case 1: // FILE_NAME: fileName = token; d... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/3752b22c4e2d13dffd60fa330c40e9f635a0a758/CTagsEntry.java/buggy/core/org.eclipse.cdt.core/index/org/eclipse/cdt/internal/core/index/CTagsEntry.java | [
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public void collect() { | public final void collect () { | public void collect() { } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/85e653a9a8f2c71e7b0bf154dbf0ba0470ab6bcd/Plan.java/clean/rvm/src/vm/memoryManagers/JMTk/plan/noGC/Plan.java | [
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System.err.println("EVQ ERR 1: xv=" + xv + ", yv=" + yv); | static vValue dequeue(vList evq) { vValue a, xv, yv; a = evq.Get(); while (a == null) { //#%#%# is polling really the way to do this? try { Thread.sleep(iConfig.PollDelay); } catch (InterruptedException e) { } a = evq.Get(); } // get two more values, which must be integers xv = evq.Get(); yv ... | 4078 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4078/2b65dad4348487af766c7087e324e86d99c944b8/wEvent.java/buggy/jcon/wEvent.java | [
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((EOViewLayout)_nsView4.getLayout()).setAutosizingMask(_nsComboBox1, EOViewLayout.MinYMargin); _nsView4.add(_nsComboBox1); _nsTextField41.setSize(43, 17); _nsTextField41.setLocation(11, 57); ((EOViewLayout)_nsView4.getLayout()).setAutosizingMask(_nsTextField41, EOViewLayout.MinYMargin); _nsView4.add(_nsTextField41); i... | ((EOViewLayout)_nsView5.getLayout()).setAutosizingMask(_nsComboBox1, EOViewLayout.MinYMargin); _nsView5.add(_nsComboBox1); _nsTextField42.setSize(43, 17); _nsTextField42.setLocation(11, 57); ((EOViewLayout)_nsView5.getLayout()).setAutosizingMask(_nsTextField42, EOViewLayout.MinYMargin); _nsView5.add(_nsTextField42); i... | protected void _init() { super._init(); _setFontForComponent(_nsButton26, "Lucida Grande", 13, Font.PLAIN); _nsButton26.setMargin(new Insets(0, 2, 0, 2)); _setFontForComponent(_nsTextField44, "Lucida Grande", 13, Font.PLAIN); _nsTextField44.setEditable(true); _nsTextField44... | 6190 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6190/da48cac11a5f1f0affd57bba7a54108fd37ff96c/_MyDocument_EOArchive_English.java/clean/MacPAF/English.lproj/MyDocument.nib/_MyDocument_EOArchive_English.java | [
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private int addString(String str, int iCodeTop) { | private int addString(String str, int iCodeTop) { | private int addString(String str, int iCodeTop) { int index = itsStrings.get(str, -1); if (index == -1) { index = itsStrings.size(); itsStrings.put(str, index); } iCodeTop = addIndex(index, iCodeTop); lastAddString = str; return iCodeTop; } | 11366 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11366/faf2a30c39fc508f2635416a94f9662c4ae41ad3/Interpreter.java/clean/js/rhino/src/org/mozilla/javascript/Interpreter.java | [
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try { runBareImpl(); | final ModifiableRootModel rootModel = rootManager.getModifiableModel(); rootModel.setJdk(jdk); rootModel.commit(); | public void run() { try { runBareImpl(); } catch (Throwable th) { throwable[0] = th; } finally { try { SwingUtilities.invokeAndWait(new Runnable() { public void run() { cleanupApplicationCaches(); } ... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/6b12a0a40f3166f2610a6e4ff6bb9bac3d6188fe/IdeaTestCase.java/clean/ExtendedApi/src/com/intellij/testFramework/IdeaTestCase.java | [
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} | } | public FolderMenu() { } | 967 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/967/d6ba856b557163ee8346c1dabdc3480081fc3bff/FolderMenu.java/clean/net/suberic/pooka/gui/FolderMenu.java | [
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store.setDefault(AbstractDecoratedTextEditorPreferenceConstants.EDITOR_USE_CUSTOM_CARETS, true); | public static void initDefaults(IPreferenceStore store) { store.setDefault(CEditor.MATCHING_BRACKETS, true); PreferenceConverter.setDefault(store, CEditor.MATCHING_BRACKETS_COLOR, new RGB(170,170,170)); store.setDefault(AbstractDecoratedTextEditorPreferenceConstants.EDITOR_CURRENT_LINE, true); PreferenceConverter.... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/e8bb99d6b59ce02789a0504b6782834bddf1d9d9/CEditorPreferencePage.java/clean/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/preferences/CEditorPreferencePage.java | [
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lastPopup = popupName; | setCurrentPopupSelection( popupName ); | public boolean attachPopup( String popupName ) { // If general selection is null or not existent, to open subtask // selection. boolean affectTaskSelection = true; if ( popupName == null || !popupSheetRegistry.containsKey( popupName ) ) { popupName = lastPopup; // Keep task selection since user doesn't change... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/16b654a3bbe4b30ae3036deee0f940dfd1331bc1/SubtaskSheetImpl.java/clean/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/wizard/format/SubtaskSheetImpl.java | [
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if (isAnimated()) animateJob.schedule(); else { | private Job getAnimateJob() { if (animateJob == null) { animateJob = new Job(ProgressMessages.getString("AnimateJob.JobName")) {//$NON-NLS-1$ /* (non-Javadoc) * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor) */ public IStatus run(IProgressMonitor monitor) { try { ... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/cc72ec84df4d93cc632406d8e555ffcc65f0b1b1/AnimationItem.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/AnimationItem.java | [
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index += VM_HardwarePerformanceMonitors.SIZE_OF_INT; | index = index.add(BYTES_IN_INT); | private void tracing(int tid, int global_tid, long startOfWallTime, long endOfWallTime, HPM_counters counters, boolean threadSwitch) { //-#if RVM_WITH_HPM // which buffer to use if (! processCallbacksFromConsumer()) return; if (! pickBuffer(VM_HardwarePerformanceMonitors.getRecord... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/3a1409586ed0fc007c4120f3a96d6f7a1ae3593c/VM_HardwarePerformanceMonitor.java/buggy/rvm/src/vm/HPM/VM_HardwarePerformanceMonitor.java | [
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private static GeneralFile getFile(TableRow bitstream) throws IOException // MOD end { // Check that bitstream is not null if (bitstream == null) { return null; } // Get the store to use int storeNumber = bitstream.getIntColumn("store_number"); // De... | 47292 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47292/1fa8cb061e30402c53fca9f2a1d975fbe6581803/BitstreamStorageManager.java/clean/dspace/src/org/dspace/storage/bitstore/BitstreamStorageManager.java | [
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if (instanceLoc == null || instanceLoc.isReadOnly()) return; | if (instanceLoc == null || instanceLoc.isReadOnly()) { return; } | private static void writeWorkspaceVersion() { Location instanceLoc = Platform.getInstanceLocation(); if (instanceLoc == null || instanceLoc.isReadOnly()) return; File versionFile = getVersionFile(instanceLoc.getURL(), true); if (versionFile == null) return; O... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/e38d295ea613cf9f08aadb93a84a33d2e91abc5f/IDEApplication.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/IDEApplication.java | [
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assertEquals(Short.MAX_VALUE, xSR.maximum); | assertEquals(Integer.MAX_VALUE, xSR.maximum); | public void testCalculateMinorAxisRequirements() { view.layoutPool = new PlainView(root) { public float getPreferredSpan(int axis) { return axis == X_AXIS ? -13 : 13; } public float getMinimumSpan(int axis) { return axis == X_AXIS ? -19 : 7; ... | 54769 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54769/9b00f971bab2256d913aec1b141462a929f6e182/FlowViewTest.java/clean/modules/swing/src/test/api/java/common/javax/swing/text/FlowViewTest.java | [
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System.out.print("static const int VM_Processor_threadSwitchRequested_offset = " | p("static const int VM_Processor_threadSwitchRequested_offset = " | static void emitVirtualMachineDeclarations (int bootImageAddress) { // load address for the boot image // System.out.print("static const int bootImageAddress = 0x" + Integer.toHexString(bootImageAddress) + ";\n"); // values in VM_Constants, from VM_Configuration // //-#... | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/23b56e5e288693bb113ee939c9ca6e410ad03d56/GenerateInterfaceDeclarations.java/clean/rvm/src/tools/bootImageRunner/GenerateInterfaceDeclarations.java | [
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calculateExceptionsThrown(operand, exceptionTypes, factory); | calculateExceptionsThrown(operand, exceptionTypes); | private static void calculateExceptionsThrownForPrefixException(PsiPrefixExpression prefixExp, Set exceptionTypes, PsiElementFactory factory){ final PsiExpression operand = pr... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/3837c95856454e21e9059f3aa91174a1e2c65526/ExceptionUtils.java/clean/plugins/IntentionPowerPak/src/com/siyeh/ipp/exceptions/ExceptionUtils.java | [
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aboutItemActionPerformed(evt); | viewConsoleItemActionPerformed(evt); | public void actionPerformed(java.awt.event.ActionEvent evt) { aboutItemActionPerformed(evt); } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/7eb0c8cd83074c0e31590fefc8a109a49972f5b1/FindBugsFrame.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/gui/FindBugsFrame.java | [
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public synchronized void write(Topic topic, TopicVersion topicVersion) throws Exception { int previousTopicVersionId = 0; if (topic.getTopicId() > 0) { TopicVersion oldVersion = lookupLastTopicVersion(topic.getVirtualWiki(), topic.getName()); if (oldVersion != null) previousTopicVersionId = oldVersion.getTopicVe... | 50517 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50517/3b40d848cf3211a25914f0dee759e8badfcd90ad/PersistencyHandler.java/clean/src/java/org/jamwiki/persistency/PersistencyHandler.java | [
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final int type) { super(commandId, schemeId, contextId, locale, platform, null, type); | final int type, final Parameterization[] parameterizations) { super((commandId == null) ? null : new ParameterizedCommand( commandManager.getCommand(commandId), parameterizations), schemeId, contextId, locale, platform, null, type); | TestBinding(final String commandId, final String schemeId, final String contextId, final String locale, final String platform, final int type) { super(commandId, schemeId, contextId, locale, platform, null, type); } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/e61bf96d546738a5dfebc5feb8c2bcbe110e4371/TestBinding.java/buggy/tests/org.eclipse.ui.tests/Eclipse UI Tests/org/eclipse/ui/tests/keys/TestBinding.java | [
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addIcode(gotoOp); recordJump(fromPC, jumpPC); itsICodeTop += 2; | if (fromPC <= jumpPC) throw Kit.codeBug(); addGotoOp(gotoOp); resolveGoto(fromPC, jumpPC); | private void addBackwardGoto(int gotoOp, int jumpPC) { if (jumpPC >= itsICodeTop) throw Kit.codeBug(); int fromPC = itsICodeTop; addIcode(gotoOp); recordJump(fromPC, jumpPC); itsICodeTop += 2; } | 47345 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47345/bc63a23d7b4a1d6e277c093eb62057be0106b31e/Interpreter.java/buggy/src/org/mozilla/javascript/Interpreter.java | [
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m_log.error("DbUserManager.prepareConnection()", ex); | log.error("DbUserManager.prepareConnection()", ex); | private void prepareConnection() throws SQLException { boolean isClosed = false; try { if( (m_connection == null) || m_connection.isClosed() ) { isClosed = true; } } catch(SQLException ex) { m_log.error("DbUserManager.prepareConnection(... | 48500 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48500/f8bdbb2dab0d67be139dd05d6110e466306c8868/DbUserManager.java/buggy/src/java/org/apache/ftpserver/usermanager/DbUserManager.java | [
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_builder = new PacketBuilder(ctx, _transport); | _builder = new PacketBuilder(ctx); | public OutboundMessageFragments(RouterContext ctx, UDPTransport transport) { _context = ctx; _log = ctx.logManager().getLog(OutboundMessageFragments.class); _transport = transport; _activeMessages = new ArrayList(MAX_ACTIVE); _nextPacketMessage = 0; _builder = new PacketBui... | 27493 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27493/9e5fe7d2b6b1021feed75ebf5156f3ae8688026f/OutboundMessageFragments.java/buggy/router/java/src/net/i2p/router/transport/udp/OutboundMessageFragments.java | [
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reportSchemaError(SchemaMessageProvider.ListUnionRestrictionError, new Object [] { simpleTypeDecl.getAttribute( SchemaSymbols.ATT_NAME )}); | reportSchemaError(SchemaMessageProvider.ListUnionRestrictionError, new Object [] { simpleTypeDecl.getAttribute( SchemaSymbols.ATT_NAME )}); | private int traverseSimpleTypeDecl( Element simpleTypeDecl ) throws Exception { String nameProperty = simpleTypeDecl.getAttribute( SchemaSymbols.ATT_NAME ); String qualifiedName = nameProperty; if (fTargetNSURIString.length () != 0) { qualifiedName = fTarget... | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/85a6558c8d60adea154dad87b9e9373d2e66bccc/TraverseSchema.java/clean/src/org/apache/xerces/validators/schema/TraverseSchema.java | [
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Event event = MockUtil.createEvent("Test", uei, svc.getNodeId(), svc.getIpAddr(), svc.getName()); | Event event = MockUtil.createServiceEvent("Test", uei, svc); | private void anticipateSvcStatusChanged(MockElement element, final EventAnticipator anticipator, final int newStatus) { final String uei = (newStatus == ServiceMonitor.SERVICE_AVAILABLE ? EventConstants.NODE_REGAINED_SERVICE_EVENT_UEI : EventConstants.NODE_LOST_SERVICE_EVENT_UEI); MockVisitor eventCre... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/ff6b64d8500d168a9bb564d9da310e29dd24a6a1/PollerTest.java/buggy/src/services/org/opennms/netmgt/poller/PollerTest.java | [
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public synchronized double nextGaussian() { return super.nextGaussian(); } | public double nextGaussian() { return super.nextGaussian(); } | public synchronized double nextGaussian() { return super.nextGaussian(); } | 27433 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27433/b2f0d17e94d14935df1dfc85d03f4f3eae66000e/RandomSource.java/buggy/core/java/src/net/i2p/util/RandomSource.java | [
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dns.revertState(); return true; | boolean handleQuery(JmDNS dns, long expirationTime) { if (dns.host.sameName(this) && ! dns.host.sameValue(this)) { if (dns.debug > 1) System.out.println("JmDNS DNSRecord.Address.handleQuery() Conflicting probe detected"); // Tie-breaker test if (dns.getSta... | 2281 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2281/3fae35de8c4ce868da36396d46828869c5809036/DNSRecord.java/clean/jmdns/src/javax/jmdns/DNSRecord.java | [
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return (String) valueMapping.get(value); | return (AttributeMapping) valueMapping.get(value); | private String findGroupValue(ConcreteMarker marker) { if (types.contains(marker.getType())) { String value; try { value = (String) marker.getMarker().getAttribute( markerAttribute); } catch (CoreException e) { return null; } if (valueMapping.containsKey(value)) return (String) valueMapping.ge... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/0446a7ffd95451a95b1b9aea90290a8cb25be855/FieldMarkerGroup.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/views/markers/internal/FieldMarkerGroup.java | [
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WordCompletionData.AllWordsGetter getter = new WordCompletionData.AllWordsGetter(); | AllWordsGetter getter = new AllWordsGetter(); | private static Object[] getAllWordsFromDocument(PsiElement context, CompletionContext completionContext) { WordCompletionData.AllWordsGetter getter = new WordCompletionData.AllWordsGetter(); return getter.get(context, completionContext); } | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/f251efe26525495da44dafdbea831741c4697c01/XmlAttributeValueGetter.java/clean/source/com/intellij/psi/filters/getters/XmlAttributeValueGetter.java | [
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yy_markedPos = yy_markedPos_l; switch (yy_action) { case 78: case 98: case 189: case 199: case 205: case 230: case 246: case 262: { if(!deleteErrors) { throwError("Unknown @identifier "+yytext()); | zzMarkedPos = zzMarkedPosL; switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) { case 26: { String s = yytext(); w.write(s); if(debug) log("Matched @media: "+s); } case 32: break; case 18: { String s = yytext(); w.write(s); if(debug) log("Matched unicode: "+s); } case 33: break; case 8: { String s = yytext(); w.wr... | public Yytoken yylex() throws java.io.IOException { int yy_input; int yy_action; // cached fields: int yy_currentPos_l; int yy_startRead_l; int yy_markedPos_l; int yy_endRead_l = yy_endRead; char [] yy_buffer_l = yy_buffer; char [] yycmap_l = yycmap; int [] yytrans_l = yytrans; int []... | 50493 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50493/689ed6b27a2e7acac33d90a4e6fea2ddf018345b/CSSTokenizerFilter.java/buggy/src/freenet/clients/http/filter/CSSTokenizerFilter.java | [
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admin_start += "<input type=\"text\" name=\""+child_meta_id+"\" value=\""+child_manual_sort_order+"\" size=\"4\" maxlength=\"4\">" ; } admin_start += "<input type=\"checkbox\" name=\"archiveDelBox\" value=\""+child_meta_id+"\">" ; | admin_start += sortBox ; } admin_start += archiveDelBox ; | public byte[] parsePage (int meta_id, User user, int flags) throws IOException { try { long totaltime = System.currentTimeMillis() ; String meta_id_str = String.valueOf(meta_id) ; int user_id = user.getInt("user_id") ; String user_id_str = String.valueOf(user_id) ; //log.log(Log.WILD, "Starting parsing of page for ... | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/4c97b2895de9df05fb85bd1f7adb0a9a8723d63d/IMCService.java/buggy/server/src/imcode/server/IMCService.java | [
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ArrayList newRows = new ArrayList(rows.size()); | ArrayList newRows = new ArrayList(rows.size()); | public void addColumns(int aColumns) { ArrayList newRows = new ArrayList(rows.size()); int newColumns = columns + aColumns; Row row; for (int i = 0; i < rows.size(); i++) { row = new Row(newColumns); for (int j = 0; j < columns; j++) { row.setCell(((R... | 6653 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6653/913d133febf0c5fd6ac6f0b71398cf5fa320da91/Table.java/clean/src/com/lowagie/text/Table.java | [
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List activeKeyConfigurationDefinitions = Collections .unmodifiableList(Persistence .readActiveKeyConfigurationDefinitions( memento, Persistence.TAG_ACTIVE_KEY_CONFIGURATION, null)); | public void load() throws IOException { String preferenceString = preferenceStore.getString(KEY); if (preferenceString != null && preferenceString.length() != 0) { Reader reader = new StringReader(preferenceString); try { IMemento memento = XMLMemento.createReadRoo... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/3e8945fb2818df136350a32f988a4b9a88eb3beb/PreferenceCommandRegistry.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/commands/PreferenceCommandRegistry.java | [
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String[] valueArray = new String[values.size()]; valueArray = (String[]) values.toArray(valueArray); | DCValue[] valueArray = new DCValue[values.size()]; valueArray = (DCValue[]) values.toArray(valueArray); | public String[] getDC(String element, String qualifier, String lang) { // Build up list of matching values List values = new ArrayList(); Iterator i = dublinCore.iterator(); while (i.hasNext()) { DCValue dcv = (DCValue) i.next(); if (ma... | 47214 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47214/652740210f77a07b02963f7f2b2224086150466f/Item.java/buggy/dspace/src/org/dspace/content/Item.java | [
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