rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
|---|---|---|---|---|---|---|
case 25: return s85; | public DFA.State transition(IntStream input) throws RecognitionException { switch ( input.LA(1) ) { case 24: return s84; case 25: return s85; case EOL: case ID: case INT: case BOOL: case STRING: case FLOAT: case MISC: case WS: case SH_STYLE_SINGLE_LINE_COMMENT: case C_STYLE_SINGLE_LINE_COMMENT: case MULTI_LINE_COMMENT: case 15: case 16: case 17: case 18: case 19: case 20: case 21: case 22: case 23: case 26: case 27: case 28: case 29: case 30: case 31: case 32: case 33: case 34: case 35: case 36: case 37: case 38: case 39: case 40: case 41: case 42: case 43: case 44: case 45: case 46: case 47: case 48: case 49: case 50: case 51: case 52: case 53: case 54: case 55: case 56: case 57: return s86; default: NoViableAltException nvae = new NoViableAltException("", 4, 71, input); throw nvae; } } | 6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/506adcf4556609ba2040aab4c53c1e38dbf7c80e/RuleParser.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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RubyModule newModule = getRuby().defineModuleId(getRuby().intern(name)); | RubyModule newModule = getRuby().defineModuleId(getRuby().intern(name)); | public RubyModule defineModuleUnder(String name) { RubyModule newModule = getRuby().defineModuleId(getRuby().intern(name)); setConstant(getRuby().intern(name), newModule); newModule.setClassPath(this, name); return newModule; } | 45221 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45221/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyModule.java/clean/org/jruby/RubyModule.java | [
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JScrollPane treeScrollPane = createTreeScrollPane(); JTabbedPane editingTabbedPane = new RuleEditingTabbedPane(m_tree); JSplitPane splitPane = createSplitPane(treeScrollPane, editingTabbedPane); JPanel buttonPanel = createButtonPanel(); | JScrollPane treeScrollPane; JSplitPane splitPane; JPanel buttonPanel; treeScrollPane = createTreeScrollPane(); m_editingTabbedPane = new RuleEditingTabbedPane(m_tree); splitPane = createSplitPane(treeScrollPane, m_editingTabbedPane); buttonPanel = createButtonPanel(); | protected RulesEditor(PMDViewer pmdViewer) throws PMDException { super(pmdViewer, "Rules Editor", true); m_pmdViewer = pmdViewer; int windowWidth = 1200; int windowHeight = 900; int windowMargin = 10; Dimension screenSize = getToolkit().getScreenSize(); if (windowWidth >= screenSize.width) { windowWidth = screenSize.width - 10; } if (windowHeight >= screenSize.height) { windowHeight = screenSize.height - 20; } int windowLocationX = (screenSize.width - windowWidth) / 2; int windowLocationY = (screenSize.height - windowHeight) / 2; setLocation(windowLocationX, windowLocationY); setSize(windowWidth, windowHeight); setResizable(true); setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE); buildTree(); JScrollPane treeScrollPane = createTreeScrollPane(); JTabbedPane editingTabbedPane = new RuleEditingTabbedPane(m_tree); JSplitPane splitPane = createSplitPane(treeScrollPane, editingTabbedPane); JPanel buttonPanel = createButtonPanel(); JPanel contentPanel = new JPanel(new BorderLayout()); contentPanel.add(splitPane, BorderLayout.CENTER); contentPanel.add(buttonPanel, BorderLayout.SOUTH); getContentPane().add(contentPanel); } | 45569 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45569/43567bfc11ab6417f7dc5f2db496d3abafd70415/RulesEditor.java/clean/pmd/src/net/sourceforge/pmd/swingui/RulesEditor.java | [
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public <T extends IObject> Map findAnnotations( | public <T extends IObject> Map<Long, Set<? extends IObject>> findAnnotations( | public <T extends IObject> Map findAnnotations( @NotNull Class<T> rootNodeType, @NotNull @Validate(Long.class) Set<Long> rootNodeIds, @Validate(Long.class) Set<Long> annotatorIds, Map options); | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc049d0769f78d30527024bfadfcc7adcbdc82cb/IPojos.java/clean/components/common/src/ome/api/IPojos.java | [
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if (hasUnaryMinus) d = -d; | private ExpressionTreeNode parseFactor(Preprocessor p) throws IOException, MapyrusException { boolean hasUnaryMinus = false; boolean parsedDigit; StringBuffer buf = new StringBuffer(); ExpressionTreeNode expr; int c, lastC, quote; c = p.readNonSpace(); if (c == '\'' || c == '"') { /* * It's a quoted string. Keep reading up until matching quote. */ lastC = quote = c; while ((c = p.read()) != quote || lastC == '\\') { if (c == -1) { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.UNEXPECTED_EOF)); } if (lastC == '\\') { /* * '\\' compressed to single backslash, * '\n' converted to a newline, '\r' is stripped -- it * is not useful since we use Java's line separator internally. * Escaping of other characters is ignored. */ if (c == 'n') buf.append(Constants.LINE_SEPARATOR); else if (c != 'r') buf.append((char)c); } else if (c != '\\') { buf.append((char)c); } lastC = c; } return(new ExpressionTreeNode(new Argument(Argument.STRING, buf.toString()))); } if (c == '+') { /* * Skip unary plus. */ c = p.readNonSpace(); } if (c == '-') { /* * Note unary minus and continue. */ hasUnaryMinus = true; c = p.readNonSpace(); } if (Character.isDigit((char)c) || c == '.') { /* * Parse a decimal number and return it as a leaf node. */ parsedDigit = false; while (Character.isDigit((char)c)) { parsedDigit = true; buf.append((char)c); c = p.read(); } if (c == '.') { buf.append((char)c); c = p.read(); } while (Character.isDigit((char)c)) { parsedDigit = true; buf.append((char)c); c = p.read(); } if (!parsedDigit) { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.INVALID_NUMBER)); } if (c == 'e' || c == 'E') { buf.append((char)c); c = p.read(); if (c == '+' || c == '-') { buf.append((char)c); c = p.read(); } /* * Expect at least one digit for the exponent value. */ if (!Character.isDigit((char)c)) { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.INVALID_NUMBER)); } while (Character.isDigit((char)c)) { buf.append((char)c); c = p.read(); } } p.unread(c); double d = 0.0; try { d = Double.parseDouble(buf.toString()); } catch (NumberFormatException e) { /* * We parsed the number so it will * always be valid. */ } if (hasUnaryMinus) d = -d; return(new ExpressionTreeNode(new Argument(d))); } if (c == -1) { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.UNEXPECTED_EOF)); } if (c == '(') { expr = parseOrBoolean(p); c = p.readNonSpace(); if (c != ')') { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.UNMATCHED_BRACKET)); } } else if (Character.isLetter((char)c) || c == '$') { /* * It does not look like a numeric expression or a string * expression so maybe it is a variable name or function. */ buf.append((char)c); c = p.read(); while (c != -1 && (c == '.' || c == '_' || Character.isLetterOrDigit((char)c))) { buf.append((char)c); c = p.read(); } /* * Is this a function call like "round(3.14)"? */ Integer functionType = (Integer)(mFunctionTypeLookup.get(buf.toString())); if (functionType != null) { /* * Parse opening '(', arguments for this function, then closing ')'. */ if (Character.isWhitespace((char)c)) c = p.readNonSpace(); if (c != '(') { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.EXPECTED) + ": '('"); } int nArgs = mFunctionArgumentCount[functionType.intValue()]; ExpressionTreeNode functionExpressions[] = new ExpressionTreeNode[Math.max(nArgs, 3)]; /* * Parse expression for each function argument. */ for (int i = 0; i < functionExpressions.length; i++) functionExpressions[i] = null; for (int i = 0; i < nArgs; i++) { if (i > 0) { /* * Parse comma before next value. */ c = p.readNonSpace(); if (c != ',') { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.WRONG_FUNCTION_VALUES) + ": " + buf.toString()); } } functionExpressions[i] = parseOrBoolean(p); } c = p.readNonSpace(); if (c != ')') { throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.WRONG_FUNCTION_VALUES) + ": " + buf.toString()); } expr = new ExpressionTreeNode(functionType.intValue(), functionExpressions[0], functionExpressions[1], functionExpressions[2]); } else { p.unread(c); expr = new ExpressionTreeNode(new Argument(Argument.VARIABLE, buf.toString())); } } else { /* * It's nothing that we understand. */ throw new MapyrusException(p.getCurrentFilenameAndLineNumber() + ": " + MapyrusMessages.get(MapyrusMessages.INVALID_EXPRESSION)); } if (hasUnaryMinus) { /* * Expand expression to negate value. */ ExpressionTreeNode left = new ExpressionTreeNode(Argument.numericMinusOne); expr = new ExpressionTreeNode(left, MULTIPLY_OPERATION, expr); } return(expr); } | 2501 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2501/bffee09d58665e5275d5dd1c1a1de447af96a391/Expression.java/buggy/src/org/mapyrus/Expression.java | [
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( (BarSeries) series ).setRiserOutline( (ColorDefinition) event.data ); | if ( event.type == FillChooserComposite.FILL_CHANGED_EVENT ) { ( (BarSeries) series ).setRiserOutline( (ColorDefinition) event.data ); } | public void handleEvent( Event event ) { if ( event.widget.equals( fccRiserOutline ) ) { ( (BarSeries) series ).setRiserOutline( (ColorDefinition) event.data ); } } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/c996633e78e0adbdb5c29f63d3f3d7c52b2b3f76/BarSeriesAttributeComposite.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/series/BarSeriesAttributeComposite.java | [
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return xmlLib.xmlPrimaryReference(xmlName, scope); | return xmlLib.xmlPrimaryReference(cx, xmlName, scope); | public static Object xmlReference(Object xmlName, Context cx, Scriptable scope) { XMLLib xmlLib = currentXMLLib(cx); return xmlLib.xmlPrimaryReference(xmlName, scope); } | 12904 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12904/0bc442b668a85796112e6a1719b6befcabb17ea4/ScriptRuntime.java/buggy/js/rhino/src/org/mozilla/javascript/ScriptRuntime.java | [
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.buildRule()); | .buildRule(), ResourcesPlugin.FAMILY_MANUAL_BUILD); | public void run() { // Save all resources prior to doing build saveAllResources(); runInBackground(ResourcesPlugin.getWorkspace().getRuleFactory() .buildRule()); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/e4f3f849dbf9b6f0963b417f68ecad8ddbfaf20c/BuildAction.java/clean/bundles/org.eclipse.ui.ide/extensions/org/eclipse/ui/actions/BuildAction.java | [
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protected Collection translateItem(Item srcItem) throws ObjectStoreException, InterMineException { Collection result = new HashSet(); String srcNs = XmlUtil.getNamespaceFromURI(srcItem.getClassName()); String className = XmlUtil.getFragmentFromURI(srcItem.getClassName()); Collection translated = super.translateItem(srcItem); if (translated != null) { for (Iterator i = translated.iterator(); i.hasNext();) { boolean storeTgtItem = true; Item tgtItem = (Item) i.next(); if ("karyotype".equals(className)) { tgtItem.addReference(getOrgRef()); addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); Item location = createLocation(srcItem, tgtItem, true); location.addAttribute(new Attribute("strand", "0")); result.add(location); } else if ("exon".equals(className)) { tgtItem.addReference(getOrgRef()); Item stableId = getStableId("exon", srcItem.getIdentifier(), srcNs); if (stableId != null) { moveField(stableId, tgtItem, "stable_id", "identifier"); } addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); Item location = createLocation(srcItem, tgtItem, true); result.add(location); } else if ("gene".equals(className)) { tgtItem.addReference(getOrgRef()); addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); Item location = createLocation(srcItem, tgtItem, true); result.add(location); Item anaResult = createAnalysisResult(srcItem, tgtItem); result.add(anaResult); List comments = getCommentIds(srcItem.getIdentifier(), srcNs); if (!comments.isEmpty()) { tgtItem.addCollection(new ReferenceList("comments", comments)); } // gene name should be its stable id (or identifier if none) Item stableId = null; stableId = getStableId("gene", srcItem.getIdentifier(), srcNs); if (stableId != null) { moveField(stableId, tgtItem, "stable_id", "identifier"); } else { tgtItem.addAttribute(new Attribute("identifier", srcItem.getIdentifier())); } // display_xref is gene name (?) //promoteField(tgtItem, srcItem, "name", "display_xref", "display_label"); result.addAll(setGeneSynonyms(srcItem, tgtItem, srcNs)); // if no organismDbId set to be same as identifier if (!tgtItem.hasAttribute("organismDbId")) { tgtItem.addAttribute(new Attribute("organismDbId", tgtItem.getAttribute("identifier").getValue())); } } else if ("transcript".equals(className)) { tgtItem.addReference(getOrgRef()); addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); Item geneRelation = createItem(tgtNs + "SimpleRelation", ""); addReferencedItem(tgtItem, geneRelation, "objects", true, "subject", false); moveField(srcItem, geneRelation, "gene", "object"); result.add(geneRelation); // if no identifier set the identifier as name (primary key) if (!tgtItem.hasAttribute("identifier")) { Item stableId = getStableId("transcript", srcItem.getIdentifier(), srcNs); if (stableId != null) { moveField(stableId, tgtItem, "stable_id", "identifier"); } else { tgtItem.addAttribute(new Attribute("identifier", srcItem.getIdentifier())); } } Item location = createLocation(srcItem, tgtItem, true); result.add(location); } else if ("translation".equals(className)) { Item protein = getProteinByPrimaryAccession(srcItem, srcNs); if (protein != null && srcItem.hasReference("transcript")) { String transcriptId = srcItem.getReference("transcript").getRefId(); Item transRelation = createItem(tgtNs + "SimpleRelation", ""); transRelation.addReference(new Reference("subject", transcriptId)); addReferencedItem(protein, transRelation, "subjects", true, "object", false); result.add(transRelation); } storeTgtItem = false; // stable_ids become syonyms, need ensembl Database as source } else if (className.endsWith("_stable_id")) { if (className.endsWith("translation_stable_id")) { storeTgtItem = false; } else { tgtItem.addReference(getEnsemblRef()); tgtItem.addAttribute(new Attribute("type", "identifier")); } // } else if ("prediction_transcript".equals(className)) { // tgtItem.addReference(getOrgRef()); // result.add(createLocation(srcItem, tgtItem, true)); } else if ("repeat_feature".equals(className)) { tgtItem.addReference(getOrgRef()); addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); result.add(createAnalysisResult(srcItem, tgtItem)); result.add(createLocation(srcItem, tgtItem, true)); promoteField(tgtItem, srcItem, "consensus", "repeat_consensus", "repeat_consensus"); promoteField(tgtItem, srcItem, "type", "repeat_consensus", "repeat_class"); promoteField(tgtItem, srcItem, "identifier", "repeat_consensus", "repeat_name"); } else if ("marker".equals(className)) { addReferencedItem(tgtItem, getEnsemblDb(), "evidence", true, "", false); Set locations = createLocations(srcItem, tgtItem, srcNs); List locationIds = new ArrayList(); for (Iterator j = locations.iterator(); j.hasNext(); ) { Item location = (Item) j.next(); locationIds.add(location.getIdentifier()); result.add(location); } //tgtItem.addCollection(new ReferenceList("locations", locationIds)); setNameAttribute(srcItem, tgtItem); //setSynonym } else if ("marker_synonym".equals(className)) { tgtItem.addAttribute(new Attribute("type", "identifier")); if (srcItem.hasAttribute("source")) { String source = srcItem.getAttribute("source").getValue(); if (source.equals("genbank")) { tgtItem.addReference(getGenbankRef()); } else if (source.equals("gdb")) { tgtItem.addReference(getGdbRef()); } else if (source.equals("unists")) { tgtItem.addReference(getUnistsRef()); } else { tgtItem.addReference(getEnsemblRef()); } } else { tgtItem.addReference(getEnsemblRef()); } } if (storeTgtItem) { result.add(tgtItem); } } // assembly maps to null but want to create location on a supercontig } else if ("assembly".equals(className)) { Item location = createAssemblyLocation(srcItem); result.add(location); // seq_region map to null, become Chromosome, Supercontig, Clone and Contig respectively } else if ("seq_region".equals(className)) { Item seq = getSeqItem(srcItem.getIdentifier()); result.add(seq); //simple_feature map to null, become TRNA/CpGIsland depending on analysis_id(logic_name) } else if ("simple_feature".equals(className)) { Item simpleFeature = createSimpleFeature(srcItem); result.add(simpleFeature); result.add(createLocation(srcItem, simpleFeature, true)); result.add(createAnalysisResult(srcItem, simpleFeature)); } return result; } | 7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/75fa30e23d4ba676244e279242108e72c0f99d55/EnsemblHumanDataTranslator.java/clean/flymine/model/ensembl-human/src/java/org/flymine/dataconversion/EnsemblHumanDataTranslator.java | [
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public void actionPerformed(AnActionEvent event) { log.debug("actionPerformed"); if (filter == null) { log.debug("no filter selected"); return; } long start = System.currentTimeMillis(); final Project project = (Project) event.getDataContext().getData(DataConstants.PROJECT); final ProjectRootManager projectRootManager = ProjectRootManager.getInstance(project); final ProjectFileIndex index = projectRootManager.getFileIndex(); // TODO: once a filter is defined we iterate over everything and see if it fits // if it does we add it to the list we're hopefully collecting // then sort the list and display it with the proper file status colors // and ICON indications of open or closed? // and also ICON indications of errors or not? // little endian camel case sort might be nice too VirtualFile[] roots = projectRootManager.getContentRoots(); log.debug("iterating content under roots"); XFilesContentIterator content = new XFilesContentIterator(filter); for (int i = 0; i < roots.length; i++) { VirtualFile root = roots[i]; log.debug("root " + root.getPath()); index.iterateContentUnderDirectory(root, content); } // TODO: FilterConfigurationPanel to edit configurations // TODO: FilterConfiguration to store individual configurations // TODO: XFilesFilter that uses selected FilterConfiguration to filter files // TODO: XFilesConfiguration class to hold FilterConfigurations and selected filter // TODO: the collected list should be run through the selected filter which should // define the sort order explicitly List included = content.getIncluded(); //Collections.sort(included, comparator); model.clear(); for (Iterator iterator = included.iterator(); iterator.hasNext();) { VirtualFile file = (VirtualFile) iterator.next(); model.addElement(file); } long finish = System.currentTimeMillis(); long delta = finish - start; WindowManager windowManager = WindowManager.getInstance(); StatusBar statusBar = windowManager.getStatusBar(project); statusBar.setInfo("filter refreshed in " + delta + "ms; " + content + " " + filter); // TODO: decide how to do logical combination of selection based on the information above // i.e. if two statuses and two file types are selected for inclusion what is the expected result // clearly, logical or between selections of the same type (file type, file status, etc.) // but logical and/or between selections of different types might both be useful // i.e. these statuses AND those types // vs these status OR those types } | 4589 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4589/a095ca0e794a1a91a38297713e8880096f2686e9/RefreshAction.java/buggy/src/com/echologic/xfiles/RefreshAction.java | [
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workingSetManager = null; | if (workingSetManager != null) { workingSetManager.dispose(); workingSetManager = null; } | void reset() { editorRegistry = null; if (decoratorManager != null) { decoratorManager.dispose(); decoratorManager = null; } ProgressManager.shutdownProgressManager(); themeRegistry = null; workingSetManager = null; workingSetRegistry = null; preferenceManager = null; if (viewRegistry != null) { viewRegistry.dispose(); viewRegistry = null; } if (perspRegistry != null) { perspRegistry.dispose(); perspRegistry = null; } actionSetRegistry = null; sharedImages = null; productInfo = null; introRegistry = null; DEBUG = false; } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/1dfd3d42d5b7ec993408e79c71c6db3f948172e2/WorkbenchPlugin.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/WorkbenchPlugin.java | [
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return new CASTArrayDesignator(); } | return new CASTArrayDesignator(); } | protected ICASTArrayDesignator createArrayDesignator() { return new CASTArrayDesignator(); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/8d833f012a81dac41a0d33c7e0f047c1dfe415f2/GNUCSourceParser.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/dom/parser/c/GNUCSourceParser.java | [
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if(lastInsertion == items.length) | if(lastInsertion == items.length) { | private void createAddedElements(Widget widget, Object[] elements) { if(elements.length == 1){ if (equals(elements[0], widget.getData())) return; } ViewerSorter sorter = getSorter (); TreePath parentPath = internalGetSorterParentPath(widget, sorter); Item[] items = getChildren(widget); //As the items are sorted already we optimize for a //start position int lastInsertion = 0; //Optimize for the empty case if(items.length == 0){ for (int i = 0; i < elements.length; i++) { createTreeItem(widget, elements[i], -1); } return; } for (int i = 0; i < elements.length; i++) { boolean newItem = true; Object element = elements[i]; int index; if(sorter == null){ if(itemExists(items,element)){ refresh(element); newItem = false; } index = -1; } else{ lastInsertion = insertionPosition(items,sorter,lastInsertion, element, parentPath); //As we are only searching the original array we keep track of those positions only if(lastInsertion == items.length) index = -1; else{//See if we should just refresh while(lastInsertion < items.length && internalCompare(sorter,parentPath,element,items[lastInsertion].getData()) == 0){ //As we cannot assume the sorter is consistent with equals() - therefore we can // just check against the item prior to this index (if any) if (items[lastInsertion].getData().equals(element)) { //refresh the element in case it has new children refresh(element); newItem = false; } lastInsertion ++;//We had an insertion so increment } //Did we get to the end? if(lastInsertion == items.length) index = -1; else index = lastInsertion + i; //Add the index as the array is growing } } if(newItem) createTreeItem(widget, element, index); } } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/391f2606b4ea2c1fb5052d938ca90877ee7631f6/AbstractTreeViewer.java/clean/bundles/org.eclipse.jface/src/org/eclipse/jface/viewers/AbstractTreeViewer.java | [
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if(queryArgs != null) { | offset = retrieveOffsetValue(arguments); if(queryArgs != null) { | protected Object doInvokeInternal(final Class clazz, String methodName, final Object[] arguments) { if(arguments.length == 0) return getHibernateTemplate().loadAll(clazz); final Object arg = arguments[0] instanceof GString ? arguments[0].toString() :arguments[0]; // if the arg is an instance of the class find by example if(arg instanceof String) { final String query = (String)arg; if(!query.matches( "from "+clazz.getName()+".*" )) { throw new GrailsQueryException("Invalid query ["+query+"] for domain class ["+clazz+"]"); } return super.getHibernateTemplate().executeFind( new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException, SQLException { Query q = session.createQuery(query); Object[] queryArgs = null; int max = -1; if(arguments.length > 1) { if(arguments[1] instanceof List) { queryArgs = ((List)arguments[1]).toArray(); } else if(arguments[1].getClass().isArray()) { queryArgs = (Object[])arguments[1]; } } max = retrieveMaxValue(arguments); if(queryArgs != null) { for (int i = 0; i < queryArgs.length; i++) { if(queryArgs[0] instanceof GString) { q.setParameter(i,queryArgs[i].toString()); } else { q.setParameter(i, queryArgs[i]); } } } if(max > -1) { q.setMaxResults(max); } return q.list(); } private int retrieveMaxValue(Object[] arguments) { int max = -1; if(arguments.length > 1) { if(arguments[1] instanceof Integer) { max = ((Integer)arguments[1]).intValue(); } if(arguments.length > 2) { if(arguments[2] instanceof Integer) { max = ((Integer)arguments[2]).intValue(); } } } return max; } }); } if(clazz.isAssignableFrom( arg.getClass() )) { return super.getHibernateTemplate().executeFind( new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException, SQLException { Example example = Example.create(arg) .ignoreCase(); Criteria crit = session.createCriteria(clazz); crit.add(example); return crit.list(); } }); } throw new MissingMethodException(methodName,clazz,arguments); } | 26970 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/26970/eb420a51890989f6ca7f281725a19ebec728f77c/FindAllPersistentMethod.java/buggy/src/persistence/org/codehaus/groovy/grails/orm/hibernate/metaclass/FindAllPersistentMethod.java | [
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return this.name; | return name; | public String getFilename() { if(this.localFile != null) return this.localFile.getName(); else return this.name; } | 47012 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47012/0458430a0dc8a713aa2b4d64f000cbbaaeb4adea/FCPClientPut.java/buggy/src/thaw/fcp/FCPClientPut.java | [
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return _root; } | return _root; } | public Node getRootNode() { return _root; } | 47044 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47044/1183932ca4a81d65d22482f0b44fb17eebce0f37/ExprEvaluationContextImpl.java/buggy/bpel-runtime/src/main/java/org/apache/ode/bpel/runtime/ExprEvaluationContextImpl.java | [
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delete(existing, subMonitor); | canMove = delete(existing, subMonitor); | protected void copy(IResource[] resources, IPath destination, IProgressMonitor subMonitor) throws CoreException { for (int i = 0; i < resources.length; i++) { IResource source = resources[i]; IPath destinationPath = destination.append(source.getName()); IWorkspace workspace = source.getWorkspace(); IWorkspaceRoot workspaceRoot = workspace.getRoot(); boolean isFolder = source.getType() == IResource.FOLDER; boolean exists = workspaceRoot.exists(destinationPath); if (isFolder && exists) { // the resource is a folder and it exists in the destination, copy the // children of the folder IResource[] children = ((IContainer) source).members(); copy(children, destinationPath, subMonitor); // need to explicitly delete the folder since we're not moving it delete(source, subMonitor); } else { // if we're merging folders, we could be overwriting an existing file IResource existing = workspaceRoot.findMember(destinationPath); if (existing != null) { delete(existing, subMonitor); } source.move(destinationPath, IResource.KEEP_HISTORY, new SubProgressMonitor(subMonitor, 0)); subMonitor.worked(1); if (subMonitor.isCanceled()) { throw new OperationCanceledException(); } } } } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/d30b2de66af61ce08c4f3d70227efd12da67d153/MoveFilesAndFoldersOperation.java/clean/bundles/org.eclipse.ui/Eclipse UI/org/eclipse/ui/actions/MoveFilesAndFoldersOperation.java | [
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if (!isMarkerType(marker, IMarker.TASK)) return ""; | if (!isMarkerType(marker, IMarker.TASK)) { return ""; } | public static String getPriorityText(IMarker marker) { if (!isMarkerType(marker, IMarker.TASK)) return ""; //$NON-NLS-1$ switch (getPriority(marker)) { case IMarker.PRIORITY_HIGH: return TaskListMessages.TaskList_high; case IMarker.PRIORITY_NORMAL: return TaskListMessages.TaskList_normal; case IMarker.PRIORITY_LOW: return TaskListMessages.TaskList_low; } return ""; //$NON-NLS-1$ } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/e38d295ea613cf9f08aadb93a84a33d2e91abc5f/MarkerUtil.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/views/tasklist/MarkerUtil.java | [
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if((!prbWasNonNull) && prb != null) { | if((!prbWasNonNull) && (prb != null)) { | public synchronized boolean waitUntilStatusChange() { while(true) { if((!hadROLastTimeWaited) && hasForwardedRejectedOverload) { hadROLastTimeWaited = true; return true; } if((!prbWasNonNull) && prb != null) { prbWasNonNull = true; return false; } if(status != NOT_FINISHED) return false; try { wait(10000); } catch (InterruptedException e) { // Ignore } } } | 50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/ca136843ae9ecb30cadada58a33a5dc2cf8ad064/RequestSender.java/buggy/src/freenet/node/RequestSender.java | [
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synchronized (username.intern()) { session = anonymousSessions.get(resource); if (session == null){ session = getSession(recipient); } | session = anonymousSessions.get(resource); if (session == null){ session = getSession(recipient); | public Session getBestRoute(JID recipient) { Session session = null; String resource = recipient.getResource(); String username = recipient.getNode(); if (username == null || "".equals(username)) { if (resource != null) { synchronized (username.intern()) { session = anonymousSessions.get(resource); if (session == null){ session = getSession(recipient); } } } } else { username = username.toLowerCase(); synchronized (username.intern()) { SessionMap sessionMap = sessions.get(username); if (sessionMap != null) { if (resource == null) { session = sessionMap.getDefaultSession(); } else { session = sessionMap.getSession(resource); if (session == null) { session = sessionMap.getDefaultSession(); } } } } } return session; } | 6312 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6312/ead024c0fb571a575256e5837b6d95f127f061a2/SessionManager.java/clean/src/java/org/jivesoftware/messenger/SessionManager.java | [
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if (length > 0) { char first = name.charAt(0); if( (! Character.isLetter(first) ) && (first != '_')){ | char c; if (length == 0) { return false; } c = name.charAt(0); if ((!Character.isLetter(c)) && (c != '_')) { return false; } for (int i = 1; i < length; ++i) { c = name.charAt(i); if ((!Character.isLetterOrDigit(c)) && (c != '_')) { | private static boolean isLegalIdentifier(String name) { if (name == null) { return false; } String trimmed = name.trim(); if ((!name.equals(trimmed)) || (name.indexOf(" ") != -1) ){ //$NON-NLS-1$ return false; } int length = name.length(); if (length > 0) { char first = name.charAt(0); if( (! Character.isLetter(first) ) && (first != '_')){ return false; } for (int i = 1; i < length; i++) { char c = name.charAt(i); if((! Character.isLetterOrDigit(c)) && (c != '_') ){ return false; } } } return true; } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/3c4355b78d850284f3995401d54b190f81afb344/CConventions.java/buggy/core/org.eclipse.cdt.core/src/org/eclipse/cdt/core/CConventions.java | [
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public boolean saveRepositories(String destinationPath) { if (!Platform.isRunning()) {// || TasksUiPlugin.getDefault() == null) { return false; } Set<TaskRepository> repositoriesToWrite = new HashSet<TaskRepository>(getAllRepositories()); // if for some reason a repository is added/changed to equal one in the // orphaned set the orphan is discarded for (TaskRepository repository : orphanedRepositories) { if (!repositoriesToWrite.contains(repository)) { repositoriesToWrite.add(repository); } } try {// String dataDirectory = TasksUiPlugin.getDefault().getDataDirectory();// File repositoriesFile = new File(dataDirectory + File.separator + TasksUiPlugin.DEFAULT_REPOSITORIES_FILE); File repositoriesFile = new File(destinationPath); externalizer.writeRepositoriesToXML(repositoriesToWrite, repositoriesFile); } catch (Throwable t) { MylarStatusHandler.fail(t, "could not save repositories", false); return false; } return true; } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/dc841c630afff6eea9fa48a58143d396d272fead/TaskRepositoryManager.java/buggy/org.eclipse.mylyn.tasks.core/src/org/eclipse/mylyn/tasks/core/TaskRepositoryManager.java | [
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if(store) node.storeConfig(); | if(store && started) node.storeConfig(); | public void removeBookmark(Bookmark b, boolean store) { if (b.getKeyType().equals("USK")) { try { USK u = USK.create(b.key); this.node.uskManager.unsubscribe(u, this.uskcb, true); } catch (MalformedURLException mue) { } } this.bookmarks.remove(b); if(store) node.storeConfig(); } | 52909 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52909/8876d374f5982da70be8e0cbff4c65d9f2ff1278/BookmarkManager.java/buggy/src/freenet/clients/http/BookmarkManager.java | [
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{ | { prepareForUIUninstall(); | public void uninstallUI(JComponent c) { uninstallDefaults(); uninstallKeyboardActions(); uninstallListeners(); tree = null; completeUIUninstall(); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/3826e72d9ebe31a854c4d01d6c8f1ec65a8d80fe/BasicTreeUI.java/clean/core/src/classpath/javax/javax/swing/plaf/basic/BasicTreeUI.java | [
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return arrayType; | return this.arrayType; | public ArrayType getType() { if (arrayType == null) { preLazyInit(); this.arrayType = this.ast.newArrayType( this.ast.newPrimitiveType(PrimitiveType.INT)); postLazyInit(this.arrayType, TYPE_PROPERTY); } return arrayType; } | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/f4baff4257d9b6f1bb97486c41210e6bbf680256/ArrayCreation.java/clean/org.eclipse.jdt.core/dom/org/eclipse/jdt/core/dom/ArrayCreation.java | [
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PostProcessUtil.findLocations(os, Chromosome.class, Gene.class); | PostProcessUtil.findLocationAndObjects(os, Chromosome.class, Gene.class, false); | public void createIntergenicRegionFeatures() throws ObjectStoreException { Results results = PostProcessUtil.findLocations(os, Chromosome.class, Gene.class); results.setBatchSize(500); dataSet = (DataSet) DynamicUtil.createObject(Collections.singleton(DataSet.class)); dataSet.setTitle("FlyMine intergenic regions"); dataSet.setDescription("Intergenic regions created by FlyMine"); dataSet.setVersion("" + new Date()); // current time and date dataSet.setUrl("http://www.flymine.org"); dataSet.setDataSource(dataSource); Iterator resIter = results.iterator(); Integer previousChrId = null; Set locationSet = new HashSet(); while (resIter.hasNext()) { ResultsRow rr = (ResultsRow) resIter.next(); Integer chrId = (Integer) rr.get(0); Location loc = (Location) rr.get(1); if (previousChrId != null && !chrId.equals(previousChrId)) { Iterator irIter = createIntergenicRegionFeatures(locationSet, previousChrId); storeItergenicRegions(osw, irIter); locationSet = new HashSet(); } locationSet.add(loc); previousChrId = chrId; } if (previousChrId != null) { Iterator irIter = createIntergenicRegionFeatures(locationSet, previousChrId); storeItergenicRegions(osw, irIter); // we've created some IntergenicRegion objects so store() the DataSet osw.store(dataSet); } } | 7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/0deea374f54d7613d8da940b1ad34da82ec540c1/IntergenicRegionUtil.java/clean/flymine/model/genomic/src/java/org/flymine/postprocess/IntergenicRegionUtil.java | [
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while (fields.hasNext()) { Field field = (Field) fields.next(); genOverrideHasMethod(field); } } | while (fields.hasNext()) { Field field = (Field) fields.next(); genOverrideHasMethod(field); } } | private void genOverrideHasMethods(Type type, Alternative alt) { Iterator fields = type.altFieldIterator(alt.getId()); while (fields.hasNext()) { Field field = (Field) fields.next(); genOverrideHasMethod(field); } } | 3664 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3664/76875cdfe2af0d6de4ab58a245cce8bd703a86ab/AlternativeGenerator.java/clean/apigen/src/apigen/gen/java/AlternativeGenerator.java | [
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System.out.println("Folder " + displayName + " closed."); | System.out.println("Store " + displayName + " closed."); | public void closed(ConnectionEvent e) { System.out.println("Folder " + displayName + " closed."); if (connected == true) { try { connectStore(); } catch (MessagingException me) { System.out.println("Disconnected from store " + displayName + " and unable to reconnect: " + me.getMessage()); } } } | 967 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/967/bfbbec2bbb7733358c92815b5dd6a247a35152fb/StoreNode.java/clean/net/suberic/pooka/gui/StoreNode.java | [
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jjmatchedKind = 107; | jjmatchedKind = 120; | private final int jjMoveStringLiteralDfa1_0(long active0, long active1){ try { curChar = input_stream.readChar(); } catch(java.io.IOException e) { jjStopStringLiteralDfa_0(0, active0, active1); return 1; } switch(curChar) { case 38: if ((active1 & 0x80000000L) != 0L) return jjStopAtPos(1, 95); break; case 42: if ((active0 & 0x100L) != 0L) return jjStartNfaWithStates_0(1, 8, 54); break; case 43: if ((active1 & 0x100000000L) != 0L) return jjStopAtPos(1, 96); break; case 45: if ((active1 & 0x200000000L) != 0L) return jjStopAtPos(1, 97); break; case 46: return jjMoveStringLiteralDfa2_0(active0, 0L, active1, 0x100000000000000L); case 60: if ((active1 & 0x40000000000L) != 0L) { jjmatchedKind = 106; jjmatchedPos = 1; } return jjMoveStringLiteralDfa2_0(active0, 0L, active1, 0x20000000000000L); case 61: if ((active1 & 0x4000000L) != 0L) return jjStopAtPos(1, 90); else if ((active1 & 0x8000000L) != 0L) return jjStopAtPos(1, 91); else if ((active1 & 0x10000000L) != 0L) return jjStopAtPos(1, 92); else if ((active1 & 0x20000000L) != 0L) return jjStopAtPos(1, 93); else if ((active1 & 0x200000000000L) != 0L) return jjStopAtPos(1, 109); else if ((active1 & 0x400000000000L) != 0L) return jjStopAtPos(1, 110); else if ((active1 & 0x800000000000L) != 0L) return jjStopAtPos(1, 111); else if ((active1 & 0x1000000000000L) != 0L) return jjStopAtPos(1, 112); else if ((active1 & 0x2000000000000L) != 0L) return jjStopAtPos(1, 113); else if ((active1 & 0x4000000000000L) != 0L) return jjStopAtPos(1, 114); else if ((active1 & 0x8000000000000L) != 0L) return jjStopAtPos(1, 115); else if ((active1 & 0x10000000000000L) != 0L) return jjStopAtPos(1, 116); break; case 62: if ((active1 & 0x80000000000L) != 0L) { jjmatchedKind = 107; jjmatchedPos = 1; } return jjMoveStringLiteralDfa2_0(active0, 0L, active1, 0xc0100000000000L); case 91: return jjMoveStringLiteralDfa2_0(active0, 0L, active1, 0x400000000000000L); case 97: return jjMoveStringLiteralDfa2_0(active0, 0x90008030000L, active1, 0L); case 98: return jjMoveStringLiteralDfa2_0(active0, 0x1000L, active1, 0L); case 101: return jjMoveStringLiteralDfa2_0(active0, 0x820000400000L, active1, 0L); case 102: if ((active0 & 0x200000000L) != 0L) return jjStartNfaWithStates_0(1, 33, 28); break; case 104: return jjMoveStringLiteralDfa2_0(active0, 0x20e1000000040000L, active1, 0L); case 105: return jjMoveStringLiteralDfa2_0(active0, 0x30000000L, active1, 0L); case 108: return jjMoveStringLiteralDfa2_0(active0, 0x42080000L, active1, 0L); case 109: return jjMoveStringLiteralDfa2_0(active0, 0xc00000000L, active1, 0L); case 110: return jjMoveStringLiteralDfa2_0(active0, 0x7000000000L, active1, 0L); case 111: if ((active0 & 0x800000L) != 0L) { jjmatchedKind = 23; jjmatchedPos = 1; } return jjMoveStringLiteralDfa2_0(active0, 0x1800008181302000L, active1, 0L); case 114: return jjMoveStringLiteralDfa2_0(active0, 0x700300000004000L, active1, 0L); case 116: return jjMoveStringLiteralDfa2_0(active0, 0x4002000000000000L, active1, 0L); case 117: return jjMoveStringLiteralDfa2_0(active0, 0x4440000000000L, active1, 0L); case 119: return jjMoveStringLiteralDfa2_0(active0, 0x8000000000000L, active1, 0L); case 120: return jjMoveStringLiteralDfa2_0(active0, 0x4000000L, active1, 0L); case 121: return jjMoveStringLiteralDfa2_0(active0, 0x10000000008000L, active1, 0L); case 124: if ((active1 & 0x40000000L) != 0L) return jjStopAtPos(1, 94); break; default : break; } return jjStartNfa_0(0, active0, active1);} | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/1d8de6b34ea0ddb64fc94b478c0950c0d35de605/JavaParserTokenManager.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParserTokenManager.java | [
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if (ChainBuilderAgent.DEBUG) | if (ChainBuilderAgent.DEBUG > 3 ) | public void mouseClicked(PInputEvent e) { if (timer.isRunning()) { if (ChainBuilderAgent.DEBUG) System.err.println("mouse double click"); // this is effectively a double click. timer.stop(); if (wasDoubleClick == true) wasDoubleClick = false; else doMouseDoubleClicked(e); } else { timer.restart(); if (ChainBuilderAgent.DEBUG) System.err.println("caching click event .."+e); cachedEvent = e; } } | 13273 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13273/630a53d68f5d29c53d2485557b18599785befb83/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java | [
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if ("toString".equals(method.getName())) { | if ("toString".equals(method.getName()) && (method.getParameterTypes()).length == 0) { | public Object invoke(Object proxy, Method method, Object[] args) throws Throwable { System.out.println("--[java]ProxyHandler.invoke "+method); if ("toString".equals(method.getName())) { return "ProxyObject@{oid = "+oid+" iid = "+iid+"}"; } return Utilities.callMethod(oid, method, iid, orb, args); } | 12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/76df12a89570e7cdb108527228768943896e4f15/ProxyHandler.java/buggy/java/xpcom/java/classes/org/mozilla/xpcom/ProxyHandler.java | [
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log.debug("Could not find resource: " + uri); | in = getClass().getClassLoader().getResourceAsStream(uri); if (in == null) { log.debug("Could not find resource: " + uri); } | protected InputStream loadResource(String uri) { if (System.getProperty("xbean.dir") != null) { File f = new File(System.getProperty("xbean.dir") + uri); try { return new FileInputStream(f); } catch (FileNotFoundException e) { // Ignore } } // lets try the thread context class loader first InputStream in = Thread.currentThread().getContextClassLoader().getResourceAsStream(uri); if (in == null) { in = getClass().getClassLoader().getResourceAsStream(uri); if (in == null) { log.debug("Could not find resource: " + uri); } } return in; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/c60ad9116626de2c6d3638075063ca9ed4876ccd/XBeanNamespaceHandler.java/buggy/xbean-spring-v2b/src/main/java/org/apache/xbean/spring/context/v2b/XBeanNamespaceHandler.java | [
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Set<ITaskListElement> allRoots = manager.getTaskList().getRootElements(); System.err.println(">>> " + allRootTasks.size()); | Set<ITaskListElement> allRoots = manager.getTaskList().getRootElements(); | public void testLegacyTaskListReading() { File originalFile = manager.getTaskListFile(); File legacyListFile = TaskTestUtil.getLocalFile("testdata/legacy/tasklist_0_4_8.xml"); assertEquals(362445, legacyListFile.length()); assertTrue(legacyListFile.exists()); manager.setTaskListFile(legacyListFile); manager.readExistingOrCreateNewList(); manager.setTaskListFile(originalFile); Set<ITask> allTasks = manager.getTaskList().getAllTasks(); Set<ITask> allRootTasks = manager.getTaskList().getRootTasks(); Set<ITaskContainer> allCategories = manager.getTaskList().getCategories(); Set<ITaskListElement> allRoots = manager.getTaskList().getRootElements(); System.err.println(">>> " + allRootTasks.size()); assertEquals(0, allRootTasks.size()); manager.saveTaskList(); TaskList list = new TaskList(); manager.setTaskList(list); manager.readExistingOrCreateNewList(); assertEquals(allTasks, manager.getTaskList().getAllTasks()); assertEquals(allRootTasks.size(), manager.getTaskList().getRootTasks().size()); assertEquals(allCategories, manager.getTaskList().getCategories()); assertEquals(allRoots.size(), manager.getTaskList().getRootElements().size()); // rewrite and test again// manager.saveTaskList();// list = new TaskList();// manager.setTaskList(list);// manager.readExistingOrCreateNewList();// // assertEquals(allTasks, manager.getTaskList().getAllTasks());// assertEquals(allRootTasks, manager.getTaskList().getRootTasks());// assertEquals(allCategories, manager.getTaskList().getCategories());// assertEquals(allRoots.size(), manager.getTaskList().getRootElements().size()); } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/0b536a7add7019ec8ed51a919751d4ed2de9fa43/TaskListManagerTest.java/clean/org.eclipse.mylyn.tasks.tests/src/org/eclipse/mylyn/tasklist/tests/TaskListManagerTest.java | [
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protected static final char[] encodeTypeEntry( char[] typeName, int classType) { int pos; //3 - 1 for SUFFIX letter, 2 Separators char[] result = new char[TYPE_DECL_LENGTH + typeName.length + 3]; System.arraycopy(TYPE_DECL, 0, result, 0, pos = TYPE_DECL_LENGTH); switch (classType) { case(CLASS): result[pos++] = CLASS_SUFFIX; break; case(STRUCT): result[pos++] = STRUCT_SUFFIX; break; case(UNION): result[pos++] = UNION_SUFFIX; break; } result[pos++] = SEPARATOR; System.arraycopy(typeName, 0, result, pos, typeName.length); pos += typeName.length; result[pos++] = SEPARATOR; return result; } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/bcf023a6c80bfaf770bd00081f423c21f3e149f8/AbstractIndexer.java/buggy/core/org.eclipse.cdt.core/index/org/eclipse/cdt/internal/core/search/indexing/AbstractIndexer.java | [
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if (types == null) { | if (types == null || types.length == 0) { | public void setExceptionTypes(CtClass[] types) throws NotFoundException { declaringClass.checkModify(); if (types == null) { methodInfo.removeExceptionsAttribute(); return; } String[] names = new String[types.length]; for (int i = 0; i < types.length; ++i) names[i] = types[i].getName(); ExceptionsAttribute ea = methodInfo.getExceptionsAttribute(); if (ea == null) { ea = new ExceptionsAttribute(methodInfo.getConstPool()); methodInfo.setExceptionsAttribute(ea); } ea.setExceptions(names); } | 56357 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56357/7b2f9feef79052893b40168b2b9c6d413971346b/CtBehavior.java/buggy/src/main/javassist/CtBehavior.java | [
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throw new DomLSEx(LSException.PARSE_ERR, e); | throw new DomLSException(LSException.PARSE_ERR, e); | private XMLReader getXMLReader() throws LSException { if (reader == null) { factory.setNamespaceAware(namespaceAware); factory.setValidating(validating); factory.setXIncludeAware(xIncludeAware); try { SAXParser parser = factory.newSAXParser(); reader = parser.getXMLReader(); } catch (ParserConfigurationException e) { throw new DomLSEx(LSException.PARSE_ERR, e); } catch (SAXException e) { throw new DomLSEx(LSException.PARSE_ERR, e); } } return reader; } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/bdd0bca7f46f1e8a19b790749e32f82de6de3685/DomLSParser.java/buggy/core/src/classpath/gnu/gnu/xml/dom/ls/DomLSParser.java | [
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IDataServiceProvider idsp = ( (ChartWizardContext) super.getContext( ) ).getDataServiceProvider( ); | IDataServiceProvider idsp = getContext( ).getDataServiceProvider( ); | private void populateLists( ) { // POPULATE STYLE COMBO WITH AVAILABLE REPORT STYLES IDataServiceProvider idsp = ( (ChartWizardContext) super.getContext( ) ).getDataServiceProvider( ); if ( idsp != null ) { String[] styles = idsp.getAllStyles( ); // Add None option to remove style String[] selection = new String[styles.length + 1]; System.arraycopy( styles, 0, selection, 1, styles.length ); selection[0] = Messages.getString( "ChartSheetImpl.Label.None" ); //$NON-NLS-1$ cmbStyle.setItems( selection ); String sStyle = idsp.getCurrentStyle( ); cmbStyle.setText( ( sStyle == null ) ? selection[0] : sStyle ); NameSet nameSet = LiteralHelper.legendBehaviorTypeSet; cmbInteractivity.setItems( nameSet.getDisplayNames( ) ); cmbInteractivity.select( nameSet.getSafeNameIndex( getChart( ).getInteractivity( ) .getLegendBehavior( ) .getName( ) ) ); } } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/ac26365eb54b9a10e69498a213cb6f605f15760b/ChartSheetImpl.java/clean/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/wizard/format/chart/ChartSheetImpl.java | [
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public IRubyObject execute(IRubyObject self, IRubyObject[] args) { IRubyObject source = args[1]; IRubyObject filename = args[2]; // FIXME: lineNumber is not supported //IRubyObject lineNumber = args[3]; return args[0].evalSimple(source.getRuntime().getCurrentContext(), source, ((RubyString) filename).toString()); } | 45827 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45827/c8b66db475de1dc66f347884891dd70d9943689b/RubyObject.java/buggy/src/org/jruby/RubyObject.java | [
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System.out.println("int (*func[15])()"); parser.parse("int (*func[15])()"); | System.out.println("int (*func[15])()"); parser.parse("int (*func[15])()"); | public static void main(String[] args) { GDBTypeParser parser = new GDBTypeParser(); System.out.println("struct link { int i; int j; struct link * next} *"); parser.parse("struct link { int i; int j; struct link * next} *"); System.out.println(parser.getGDBType().verbose()); System.out.println("char **argv"); parser.parse("unsigned long long int **argv"); System.out.println(parser.getGDBType().verbose()); System.out.println("int (*daytab)[13]"); parser.parse("int (*daytab)[13]"); System.out.println(parser.getGDBType().verbose()); System.out.println("int *daytab[13]"); parser.parse("int *daytab[13]"); System.out.println(parser.getGDBType().verbose()); System.out.println("void *comp()"); parser.parse("void *comp()"); System.out.println(parser.getGDBType().verbose()); System.out.println("void (*comp)()"); parser.parse("void (*comp)()"); System.out.println(parser.getGDBType().verbose()); System.out.println("int (*func[15])()"); parser.parse("int (*func[15])()"); System.out.println(parser.getGDBType().verbose()); System.out.println("char (*(*x())[])()"); parser.parse("char (*(*x())[])()"); System.out.println(parser.getGDBType().verbose()); System.out.println("char (*(*x[3])())[5]"); parser.parse("char (*(*x[3])())[5]"); System.out.println(parser.getGDBType().verbose()); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/f3a9fae6384fd8bb36474b1661bb6d0b65b38d5f/GDBTypeParser.java/buggy/debug/org.eclipse.cdt.debug.mi.core/src/org/eclipse/cdt/debug/mi/core/GDBTypeParser.java | [
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setImageDescriptor(TasklistImages.TASK_INCOMPLETE); | setImageDescriptor(TaskListImages.TASK_INCOMPLETE); | public MarkTaskIncompleteAction(TaskListView view) { this.view = view; setText("Mark Incomplete"); setToolTipText("Mark Incomplete"); setId(ID); setImageDescriptor(TasklistImages.TASK_INCOMPLETE); } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/7434c54adb9b67993df3b0ee032cca0eaf5003f3/MarkTaskIncompleteAction.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/ui/actions/MarkTaskIncompleteAction.java | [
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public static void processSource(Context cx, String filename) { | public static void processSource(Context cx, String filename) { | public static void processSource(Context cx, String filename) { if (filename == null || filename.equals("-")) { if (filename == null) { // print implementation version getOut().println(cx.getImplementationVersion()); } // Use the interpreter for interactive input cx.setOptimizationLevel(-1); BufferedReader in = new BufferedReader (new InputStreamReader(global.getIn())); int lineno = 1; boolean hitEOF = false; while (!hitEOF) { int startline = lineno; if (filename == null) global.getErr().print("js> "); global.getErr().flush(); String source = ""; // Collect lines of source to compile. while (true) { String newline; try { newline = in.readLine(); } catch (IOException ioe) { global.getErr().println(ioe.toString()); break; } if (newline == null) { hitEOF = true; break; } source = source + newline + "\n"; lineno++; if (cx.stringIsCompilableUnit(source)) break; } Object result = evaluateScript(cx, global, null, source, "<stdin>", startline, null); if (result != cx.getUndefinedValue()) { try { global.getErr().println(cx.toString(result)); } catch (RhinoException rex) { errorReporter.reportException(rex); } } NativeArray h = global.history; h.put((int)h.getLength(), h, source); } global.getErr().println(); } else processFile(cx, global, filename); System.gc(); } | 19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/fe1695149a5be9f5989e68d9eea04d2a3e60152f/Main.java/buggy/toolsrc/org/mozilla/javascript/tools/shell/Main.java | [
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final int failedIndex = validateContent(info.childCount, info.curChildren); | final int failedIndex = validateContent(info.curChildren, 0, info.childCount); | public int whatCanGoHere(boolean fullyValid, InsertableElementsInfo info) throws Exception { // // For this one, having the empty slot at the insertion point is // a problem. So lets compress the array down. We know that it has // to have at least the empty slot at the insertion point. // for (int index = info.insertAt; index < info.childCount; index++) { info.curChildren[index].setValues(info.curChildren[index+1]); } info.childCount--; // // Check the validity of the existing contents. 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Each of // them is pretty simple, its just making sure of corner cases. // // We know its valid up to the insert point at least and we know that // the insert point is never past the number of children, so this releaves // a lot of checking below. // switch(fOp) { case XMLContentSpec.CONTENTSPECNODE_LEAF : case XMLContentSpec.CONTENTSPECNODE_ZERO_OR_ONE : // // If there are no current children, then insert at has to be // zero, so we can have the one leaf element inserted here. // if (info.childCount == 0) { info.results[0] = true; } else if (info.childCount > 0) { // // If the child count is greater than zero, then inserting // anything cannot be fully valid. But, if not fully valid // checking, it is ok as long as inserting at zero. // if (!fullyValid && (info.insertAt == 0)) info.results[0] = true; } if (fOp == XMLContentSpec.CONTENTSPECNODE_LEAF) { // If the insert point is 1, then EOC is valid there if (info.insertAt == 0) info.isValidEOC = true; } else { // Its zero or one, so EOC is valid in either case info.isValidEOC = true; } break; case XMLContentSpec.CONTENTSPECNODE_ZERO_OR_MORE : case XMLContentSpec.CONTENTSPECNODE_ONE_OR_MORE : // // The one child is always possible to insert, regardless of // where. The fully valid flag never comes into play since it // cannot become invalid by inserting any number of new // instances of the one element. // info.results[0] = true; // // Its zero/one or more, so EOC is valid in either case but only // after the 0th index for one or more. // if ((fOp == XMLContentSpec.CONTENTSPECNODE_ZERO_OR_MORE) || (info.insertAt > 0)) { info.isValidEOC = true; } break; case XMLContentSpec.CONTENTSPECNODE_CHOICE : // // If the insert point is zero, then either of the two children // can be inserted, unless fully valid is set and there are // already any children. // if (info.insertAt == 0) { if (!fullyValid && (info.childCount == 0)) { info.results[0] = true; info.results[1] = true; } } // EOC is only valid at the end if (info.insertAt == 1) info.isValidEOC = true; break; case XMLContentSpec.CONTENTSPECNODE_SEQ : // // If the insert at is 0, then the first one valid. 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If there is one child, it must be // equal to the second child of the pattern since it will // get pushed up (which means it was a pattern like (x|x) // which is kinda wierd.) // if (fullyValid) { if (info.childCount == 1) info.results[0] = info.curChildren[0].uri == fSecondChild.uri && info.curChildren[0].localpart == fSecondChild.localpart; } else { info.results[0] = true; } } else if (info.insertAt == 1) { // If fully valid, then there cannot be two existing children if (!fullyValid || (info.childCount == 1)) info.results[1] = true; } // EOC is only valid at the end if (info.insertAt == 2) info.isValidEOC = true; break; default : throw new CMException(ImplementationMessages.VAL_CST); } // We survived, so return success status return -1; } | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/180a21ab6be790743f1c2668b2accf759abc2e41/SimpleContentModel.java/clean/src/org/apache/xerces/validators/common/SimpleContentModel.java | [
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File store = assetStores[storeNumber]; | GeneralFile assetstore = assetStores[storeNumber]; | private static File getFile(TableRow bitstream) throws IOException { // Check that bitstream is not null if (bitstream == null) { return null; } // Get the store to use int storeNumber = bitstream.getIntColumn("store_number"); // Default to zero ('assetstore.dir') for backwards compatibility if (storeNumber == -1) { storeNumber = 0; } File store = assetStores[storeNumber]; // Turn the internal ID into a file path relative to the asset store // directory String id = bitstream.getStringColumn("internal_id"); BigInteger bigint = new BigInteger(id); StringBuffer result = new StringBuffer().append(store .getCanonicalPath()); // Split the id into groups for (int i = 0; i < directoryLevels; i++) { int digits = i * digitsPerLevel; result.append(File.separator).append( id.substring(digits, digits + digitsPerLevel)); } String theName = result.append(File.separator).append(id).toString(); if (log.isDebugEnabled()) { log.debug("Filename for " + id + " is " + theName); } return new File(theName); } | 52457 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52457/8f928e283b015ffda8b1f03f8899af8a09ba1ded/BitstreamStorageManager.java/buggy/dspace/src/org/dspace/storage/bitstore/BitstreamStorageManager.java | [
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return (GCTrace)ActivePlan.global(); } | return (GCTrace) ActivePlan.global(); } | private static final GCTrace global() throws InlinePragma { return (GCTrace)ActivePlan.global(); } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/57a34fa3e6e607d84b46e06082997a4771a25a85/GCTraceCollector.java/buggy/MMTk/src/org/mmtk/plan/semispace/gctrace/GCTraceCollector.java | [
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sb.append("\t"); sb.append(dns.typeString(type)); | toStringNoData() { StringBuffer sb = new StringBuffer(); sb.append(name); sb.append("\t"); sb.append(ttl); sb.append("\t"); sb.append(dns.typeString(type)); if (dclass != dns.IN) { sb.append("\t"); sb.append(dns.classString(dclass)); } sb.append("\t"); return sb;} | 4227 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4227/8a9755345c9c34f1168b16166d8283223ef1777e/dnsRecord.java/buggy/DNS/dnsRecord.java | [
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if(q == '\'' || q == '\"') { | if((q == '\'') || (q == '\"')) { | public DecodedStringThingy(String s) { if(s.startsWith("url(")) { s = s.substring("url(".length()); url = true; } char q = s.charAt(0); if(q == '\'' || q == '\"') { quote = q; s = s.substring(1); } else quote = ' '; StringBuffer buffer = new StringBuffer(); int x = 0; boolean justEscaping = false; boolean stillEscaping = false; StringBuffer hexEscape = new StringBuffer(); while(x < s.length()-1) { char c = s.charAt(x); x++; if(justEscaping) { if(c == '\n') { buffer.append(c); justEscaping = false; } else if(isHexDigit(c)) { hexEscape.append(c); justEscaping = false; stillEscaping = true; } else { buffer.append(c); // Will need to be reencoded if quote or \n justEscaping = false; } } else if(stillEscaping) { if(isHexDigit(c) && hexEscape.length() < 6) { hexEscape.append(c); } else if(Character.isWhitespace(c)) { // Ignore one whitespace char after an escape int d = Integer.parseInt(hexEscape.toString(), 16); if(d > 0xFFFF) { String error = "UCS-4 CHARACTERS OVER 0xFFFF NOT SUPPORTED!"; logError(error); try { w.write("/* "+error+"*/"); } catch (IOException e) {}; } else { c = (char)d; buffer.append(c); } stillEscaping = false; hexEscape = new StringBuffer(); } else { int d = Integer.parseInt(hexEscape.toString(), 16); if(d > 0xFFFF) { String error = "UCS-4 CHARACTERS OVER 0xFFFF NOT SUPPORTED!"; logError(error); try { w.write("/* "+error+"*/"); } catch (IOException e) {}; } else { char o = (char)d; buffer.append(o); } buffer.append(c); stillEscaping = false; hexEscape = new StringBuffer(); } } else { if(quote != ' ' && c == quote) { break; } else if (c == '\\') { justEscaping = true; } else { buffer.append(c); } } } data = buffer.toString(); if(s.length() > (x+1)) suffix = s.substring(x+1); else suffix = ""; } | 56348 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56348/ca136843ae9ecb30cadada58a33a5dc2cf8ad064/CSSTokenizerFilter.java/clean/src/freenet/clients/http/filter/CSSTokenizerFilter.java | [
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public double getDouble(int field) throws FieldNotFound { String value = getField(field).getValue(); try { return DoubleConverter.convert(value); } catch (FieldConvertError e) { throw newIncorrectDataException(e, field); } } | 52526 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52526/ac62cdb33fe9cdcbdda5568204116691fedd13fb/FieldMap.java/buggy/src/quickfix/FieldMap.java | [
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private void executeSQL70(String sql, String procName, ParamInfo[] parameters, boolean noMetaData, boolean sendNow) throws IOException, SQLException { int prepareSql = connection.getPrepareSql(); if (parameters == null && (prepareSql == EXECUTE_SQL || prepareSql == PREPARE || prepareSql == PREPEXEC)) { // Downgrade EXECUTE_SQL, PREPARE and PREPEXEC to UNPREPARED // if there are no parameters. // // Should we downgrade TEMPORARY_STORED_PROCEDURES as well? // No it may be a complex select with no parameters but costly to // evaluate for each execution. prepareSql = UNPREPARED; } if (inBatch) { // For batch execution with parameters // we need to be consistant and use // execute SQL prepareSql = EXECUTE_SQL; } if (isPreparedProcedureName(procName)) { // If the procedure is a prepared handle then redefine the // procedure name as sp_execute with the handle as a parameter. ParamInfo params[]; if (parameters != null) { params = new ParamInfo[1 + parameters.length]; System.arraycopy(parameters, 0, params, 1, parameters.length); } else { params = new ParamInfo[1]; } params[0] = new ParamInfo(Types.INTEGER, new Integer(procName), ParamInfo.INPUT); TdsData.getNativeType(connection, params[0]); parameters = params; // Use sp_execute approach procName = "sp_execute"; } else if (procName == null) { if (prepareSql == PREPEXEC) { // TODO: Make this option work with batch execution! ParamInfo params[] = new ParamInfo[3 + parameters.length]; System.arraycopy(parameters, 0, params, 3, parameters.length); // Setup prepare handle param params[0] = new ParamInfo(Types.INTEGER, null, ParamInfo.OUTPUT); TdsData.getNativeType(connection, params[0]); // Setup parameter descriptor param params[1] = new ParamInfo(Types.LONGVARCHAR, Support.getParameterDefinitions(parameters), ParamInfo.UNICODE); TdsData.getNativeType(connection, params[1]); // Setup sql statemement param params[2] = new ParamInfo(Types.LONGVARCHAR, Support.substituteParamMarkers(sql, parameters), ParamInfo.UNICODE); TdsData.getNativeType(connection, params[2]); parameters = params; // Use sp_prepexec approach procName = "sp_prepexec"; } else if (prepareSql != TdsCore.UNPREPARED && parameters != null) { ParamInfo[] params; params = new ParamInfo[2 + parameters.length]; System.arraycopy(parameters, 0, params, 2, parameters.length); params[0] = new ParamInfo(Types.LONGVARCHAR, Support.substituteParamMarkers(sql, parameters), ParamInfo.UNICODE); TdsData.getNativeType(connection, params[0]); params[1] = new ParamInfo(Types.LONGVARCHAR, Support.getParameterDefinitions(parameters), ParamInfo.UNICODE); TdsData.getNativeType(connection, params[1]); parameters = params; // Use sp_executesql approach procName = "sp_executesql"; } } if (procName != null) { // RPC call out.setPacketType(RPC_PKT); Integer shortcut; if (tdsVersion >= Driver.TDS80 && (shortcut = (Integer) tds8SpNames.get(procName)) != null) { // Use the shortcut form of procedure name for TDS8 out.write((short) -1); out.write((short) shortcut.shortValue()); } else { out.write((short) procName.length()); out.write(procName); } out.write((short) (noMetaData ? 2 : 0)); if (parameters != null) { for (int i = nextParam + 1; i < parameters.length; i++) { if (parameters[i].name != null) { out.write((byte) parameters[i].name.length()); out.write(parameters[i].name); } else { out.write((byte) 0); } out.write((byte) (parameters[i].isOutput ? 1 : 0)); TdsData.writeParam(out, connection.getCharsetInfo(), connection.getCollation(), parameters[i]); } } if (!sendNow) { // Append RPC packets out.write((byte) DONE_END_OF_RESPONSE); } } else if (sql.length() > 0) { if (parameters != null) { sql = Support.substituteParameters(sql, parameters, tdsVersion); } // Simple query out.setPacketType(QUERY_PKT); out.write(sql); if (!sendNow) { // Append SQL packets out.write("\r\n"); } } } | 2029 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2029/6a0dfa3ffdf166ddb9edef1347afb2909589185a/TdsCore.java/clean/src/main/net/sourceforge/jtds/jdbc/TdsCore.java | [
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public Scorer scorer (IndexReader indexReader) throws IOException { | public Scorer scorer (IndexReader indexReader) throws IOException { | protected Weight createWeight (final Searcher searcher) throws IOException { final Weight weight = query.createWeight (searcher); final Similarity similarity = query.getSimilarity(searcher); return new Weight() { // pass these methods through to enclosed query's weight public float getValue() { return weight.getValue(); } public float sumOfSquaredWeights() throws IOException { return weight.sumOfSquaredWeights(); } public void normalize (float v) { weight.normalize(v); } public Explanation explain (IndexReader ir, int i) throws IOException { return weight.explain (ir, i); } // return this query public Query getQuery() { return FilteredQuery.this; } // return a scorer that overrides the enclosed query's score if // the given hit has been filtered out. public Scorer scorer (IndexReader indexReader) throws IOException { final Scorer scorer = weight.scorer (indexReader); final BitSet bitset = filter.bits (indexReader); return new Scorer (similarity) { // pass these methods through to the enclosed scorer public boolean next() throws IOException { return scorer.next(); } public int doc() { return scorer.doc(); } public boolean skipTo (int i) throws IOException { return scorer.skipTo(i); } // if the document has been filtered out, set score to 0.0 public float score() throws IOException { return (bitset.get(scorer.doc())) ? scorer.score() : 0.0f; } // add an explanation about whether the document was filtered public Explanation explain (int i) throws IOException { Explanation exp = scorer.explain (i); if (bitset.get(i)) exp.setDescription ("allowed by filter: "+exp.getDescription()); else exp.setDescription ("removed by filter: "+exp.getDescription()); return exp; } }; } }; } | 1514 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1514/d07f7eea12d6ab5068b07dd884d8202460beaef4/FilteredQuery.java/buggy/src/java/org/apache/lucene/search/FilteredQuery.java | [
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source.append((char)ts.PRIMARY); source.append((char)ts.getOp()); | sourceAdd((char)ts.PRIMARY); sourceAdd((char)ts.getOp()); | private Object primaryExpr(TokenStream ts, Source source) throws IOException, JavaScriptException { int tt; Object pn; ts.flags |= ts.TSF_REGEXP; tt = ts.getToken(); ts.flags &= ~ts.TSF_REGEXP; switch(tt) { case TokenStream.FUNCTION: return function(ts, source, true); case TokenStream.LB: { source.append((char)ts.LB); pn = nf.createLeaf(ts.ARRAYLIT); ts.flags |= ts.TSF_REGEXP; boolean matched = ts.matchToken(ts.RB); ts.flags &= ~ts.TSF_REGEXP; if (!matched) { boolean first = true; do { ts.flags |= ts.TSF_REGEXP; tt = ts.peekToken(); ts.flags &= ~ts.TSF_REGEXP; if (!first) source.append((char)ts.COMMA); else first = false; if (tt == ts.RB) { // to fix [,,,].length behavior... break; } if (tt == ts.COMMA) { nf.addChildToBack(pn, nf.createLeaf(ts.PRIMARY, ts.UNDEFINED)); } else { nf.addChildToBack(pn, assignExpr(ts, source, false)); } } while (ts.matchToken(ts.COMMA)); mustMatchToken(ts, ts.RB, "msg.no.bracket.arg"); } source.append((char)ts.RB); return nf.createArrayLiteral(pn); } case TokenStream.LC: { pn = nf.createLeaf(ts.OBJLIT); source.append((char)ts.LC); if (!ts.matchToken(ts.RC)) { boolean first = true; commaloop: do { Object property; if (!first) source.append((char)ts.COMMA); else first = false; tt = ts.getToken(); switch(tt) { // map NAMEs to STRINGs in object literal context. case TokenStream.NAME: case TokenStream.STRING: String s = ts.getString(); source.addString(ts.NAME, s); property = nf.createString(ts.getString()); break; case TokenStream.NUMBER: double n = ts.getNumber(); source.addNumber(n); property = nf.createNumber(n); break; case TokenStream.RC: // trailing comma is OK. ts.ungetToken(tt); break commaloop; default: reportError(ts, "msg.bad.prop"); break commaloop; } mustMatchToken(ts, ts.COLON, "msg.no.colon.prop"); // OBJLIT is used as ':' in object literal for // decompilation to solve spacing ambiguity. source.append((char)ts.OBJLIT); nf.addChildToBack(pn, property); nf.addChildToBack(pn, assignExpr(ts, source, false)); } while (ts.matchToken(ts.COMMA)); mustMatchToken(ts, ts.RC, "msg.no.brace.prop"); } source.append((char)ts.RC); return nf.createObjectLiteral(pn); } case TokenStream.LP: /* Brendan's IR-jsparse.c makes a new node tagged with * TOK_LP here... I'm not sure I understand why. Isn't * the grouping already implicit in the structure of the * parse tree? also TOK_LP is already overloaded (I * think) in the C IR as 'function call.' */ source.append((char)ts.LP); pn = expr(ts, source, false); source.append((char)ts.RP); mustMatchToken(ts, ts.RP, "msg.no.paren"); return pn; case TokenStream.NAME: String name = ts.getString(); source.addString(ts.NAME, name); return nf.createName(name); case TokenStream.NUMBER: double n = ts.getNumber(); source.addNumber(n); return nf.createNumber(n); case TokenStream.STRING: String s = ts.getString(); source.addString(ts.STRING, s); return nf.createString(s); case TokenStream.OBJECT: { String flags = ts.regExpFlags; ts.regExpFlags = null; String re = ts.getString(); source.addString(ts.OBJECT, '/' + re + '/' + flags); return nf.createRegExp(re, flags); } case TokenStream.PRIMARY: source.append((char)ts.PRIMARY); source.append((char)ts.getOp()); return nf.createLeaf(ts.PRIMARY, ts.getOp()); case TokenStream.RESERVED: reportError(ts, "msg.reserved.id"); break; case TokenStream.ERROR: /* the scanner or one of its subroutines reported the error. */ break; default: reportError(ts, "msg.syntax"); break; } return null; // should never reach here } | 12564 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12564/92ccdd736e7a1516e4fb6d1eaf915e7021c8dc95/Parser.java/buggy/src/org/mozilla/javascript/Parser.java | [
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WorkbenchPlugin.log("Bad extension specification", status); | WorkbenchPlugin.log("Bad startup extension specification in plugin " + extension.getNamespace(), status); | public void run() throws Exception { Object executableExtension = getExecutableExtension(); // make sure the extension implements IStartup if (executableExtension != null && executableExtension instanceof IStartup) ((IStartup) executableExtension).earlyStartup(); else { IStatus status = new Status(IStatus.ERROR, extension .getNamespace(), 0, "startup class must implement org.eclipse.ui.IStartup", //$NON-NLS-1$ null); WorkbenchPlugin.log("Bad extension specification", status); //$NON-NLS-1$ } } | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/0394ca91651ee8815ed6e88762c1f1b6579a2e02/Workbench.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/Workbench.java | [
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public org.quickfix.field.UnderlyingCountryOfIssue getUnderlyingCountryOfIssue() throws FieldNotFound { org.quickfix.field.UnderlyingCountryOfIssue value = new org.quickfix.field.UnderlyingCountryOfIssue(); | public quickfix.field.UnderlyingCountryOfIssue getUnderlyingCountryOfIssue() throws FieldNotFound { quickfix.field.UnderlyingCountryOfIssue value = new quickfix.field.UnderlyingCountryOfIssue(); | public org.quickfix.field.UnderlyingCountryOfIssue getUnderlyingCountryOfIssue() throws FieldNotFound { org.quickfix.field.UnderlyingCountryOfIssue value = new org.quickfix.field.UnderlyingCountryOfIssue(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/PositionMaintenanceReport.java/buggy/src/java/src/quickfix/fix44/PositionMaintenanceReport.java | [
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return fileName.substring( lastindex, fileName.length( ) ); | int lastindex = fileName.lastIndexOf( '.' ); if ( lastindex > fileName.lastIndexOf( separators[separatorFlag] ) ) { return fileName.substring( lastindex, fileName.length( ) ); } | public static String getExtFromFileName( String fileName, int separatorFlag ) { assert fileName != null; int lastindex = fileName.lastIndexOf( '.' ); if ( lastindex > fileName.lastIndexOf( separators[separatorFlag] ) ) { return fileName.substring( lastindex, fileName.length( ) ); } return null; } | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/c2278fa505dfa5e564690c2a5748fe1fdb271bb8/FileUtil.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/util/FileUtil.java | [
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fCurrentScope, fCurrentSchemaURL, fSchemaRootElement, | fCurrentSchemaURL, fSchemaRootElement, | private void traverseInclude(Element includeDecl) throws Exception { // General Attribute Checking int scope = GeneralAttrCheck.ELE_CONTEXT_GLOBAL; Hashtable attrValues = fGeneralAttrCheck.checkAttributes(includeDecl, scope); checkContent(includeDecl, XUtil.getFirstChildElement(includeDecl), true); Attr locationAttr = includeDecl.getAttributeNode(SchemaSymbols.ATT_SCHEMALOCATION); if (locationAttr == null) { // REVISIT: Localize reportGenericSchemaError("a schemaLocation attribute must be specified on an <include> element"); return; } String location = locationAttr.getValue(); // expand it before passing it to the parser InputSource source = null; if (fEntityResolver != null) { source = fEntityResolver.resolveEntity("", location); } if (source == null) { location = expandSystemId(location, fCurrentSchemaURL); source = new InputSource(location); } else { // create a string for uniqueness of this included schema in fIncludeLocations if (source.getPublicId () != null) location = source.getPublicId (); location += (',' + source.getSystemId ()); } if (fIncludeLocations.contains((Object)location)) { return; } fIncludeLocations.addElement((Object)location); DOMParser parser = new IgnoreWhitespaceParser(); parser.setEntityResolver( new Resolver() ); parser.setErrorHandler( new ErrorHandler() { public void fatalError(SAXParseException ex) throws SAXException { StringBuffer str = new StringBuffer(); String systemId_ = ex.getSystemId(); if (systemId_ != null) { int index = systemId_.lastIndexOf('/'); if (index != -1) systemId_ = systemId_.substring(index + 1); str.append(systemId_); } str.append(':').append(ex.getLineNumber()).append(':').append(ex.getColumnNumber()); String message = ex.getMessage(); if(message.toLowerCase().trim().endsWith("not found.")) { System.err.println("[Warning] "+ str.toString()+": "+ message); } else { // do standard thing System.err.println("[Fatal Error] "+ str.toString()+":"+message); throw ex; } } }); try { parser.setFeature("http://xml.org/sax/features/validation", false); parser.setFeature("http://xml.org/sax/features/namespaces", true); parser.setFeature("http://apache.org/xml/features/dom/defer-node-expansion", false); }catch( org.xml.sax.SAXNotRecognizedException e ) { e.printStackTrace(); }catch( org.xml.sax.SAXNotSupportedException e ) { e.printStackTrace(); } try { parser.parse( source ); }catch( IOException e ) { e.printStackTrace(); }catch( SAXException e ) { //e.printStackTrace(); } Document document = parser.getDocument(); //Our Grammar Element root = null; if (document != null) { root = document.getDocumentElement(); } if (root != null) { String targetNSURI = getTargetNamespaceString(root); if (targetNSURI.length() > 0 && !targetNSURI.equals(fTargetNSURIString) ) { // REVISIT: Localize reportGenericSchemaError("included schema '"+location+"' has a different targetNameSpace '" +targetNSURI+"'"); } else { // We not creating another TraverseSchema object to compile // the included schema file, because the scope count, anon-type count // should not be reset for a included schema, this can be fixed by saving // the counters in the Schema Grammar, if (fSchemaInfoListRoot == null) { fSchemaInfoListRoot = new SchemaInfo(fElementDefaultQualified, fAttributeDefaultQualified, fBlockDefault, fFinalDefault, fCurrentScope, fCurrentSchemaURL, fSchemaRootElement, fNamespacesScope, null, null); fCurrentSchemaInfo = fSchemaInfoListRoot; } fSchemaRootElement = root; fCurrentSchemaURL = location; traverseIncludedSchemaHeader(root); // and now we'd better save this stuff! fCurrentSchemaInfo = new SchemaInfo(fElementDefaultQualified, fAttributeDefaultQualified, fBlockDefault, fFinalDefault, fCurrentScope, fCurrentSchemaURL, fSchemaRootElement, fNamespacesScope, fCurrentSchemaInfo.getNext(), fCurrentSchemaInfo); (fCurrentSchemaInfo.getPrev()).setNext(fCurrentSchemaInfo); traverseIncludedSchema(root); // there must always be a previous element! fCurrentSchemaInfo = fCurrentSchemaInfo.getPrev(); fCurrentSchemaInfo.restore(); } } } | 4434 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4434/d0806790dfe287190760329fd8a6008ffffa0f01/TraverseSchema.java/clean/src/org/apache/xerces/validators/schema/TraverseSchema.java | [
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write_header("Name", entry.getKey().toString(), pw); write_entry_attributes((Attributes) entry.getValue(), pw); pw.println(); | write_header("Name", entry.getKey().toString(), out); write_entry_attributes((Attributes) entry.getValue(), out); out.write(CRLF); | private static void write_individual_sections(Map entries, PrintWriter pw) throws JarException { Iterator it = entries.entrySet().iterator(); while (it.hasNext()) { Map.Entry entry = (Map.Entry) it.next(); write_header("Name", entry.getKey().toString(), pw); write_entry_attributes((Attributes) entry.getValue(), pw); pw.println(); } } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/eea27f084742358ddb097f7118c05cd257029453/Manifest.java/buggy/core/src/classpath/java/java/util/jar/Manifest.java | [
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clientGrabber.add(cr, req); | requestGrabber.add(cr, req); | private synchronized void addToGrabArray(short priorityClass, int retryCount, Object client, ClientRequester cr, SendableRequest req) { if((priorityClass > RequestStarter.MINIMUM_PRIORITY_CLASS) || (priorityClass < RequestStarter.MAXIMUM_PRIORITY_CLASS)) throw new IllegalStateException("Invalid priority: "+priorityClass+" - range is "+RequestStarter.MAXIMUM_PRIORITY_CLASS+" (most important) to "+RequestStarter.MINIMUM_PRIORITY_CLASS+" (least important)"); // Priority SortedVectorByNumber prio = priorities[priorityClass]; if(prio == null) { prio = new SortedVectorByNumber(); priorities[priorityClass] = prio; } // Client SectoredRandomGrabArrayWithInt clientGrabber = (SectoredRandomGrabArrayWithInt) prio.get(retryCount); if(clientGrabber == null) { clientGrabber = new SectoredRandomGrabArrayWithInt(random, retryCount); prio.add(clientGrabber); if(logMINOR) Logger.minor(this, "Registering retry count "+retryCount+" with prioclass "+priorityClass); } // Request SectoredRandomGrabArrayWithClient requestGrabber = (SectoredRandomGrabArrayWithClient) clientGrabber.getGrabber(client); if(requestGrabber == null) { requestGrabber = new SectoredRandomGrabArrayWithClient(client, random); clientGrabber.addGrabber(client, requestGrabber); } clientGrabber.add(cr, req); } | 49933 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49933/fdaec8394c29d857afa2fe31e696f7a483c5ad99/ClientRequestScheduler.java/buggy/src/freenet/client/async/ClientRequestScheduler.java | [
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return this.lengthPair; | return this; | public Object getObject() { return this.lengthPair; } | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/d9a8ac86719e48e941fde9f58e7e579fe67495ce/LengthPairProperty.java/clean/src/java/org/apache/fop/fo/LengthPairProperty.java | [
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if (!canAddAxisObjToArray(fieldAxis)) | if (fieldAxis != null && !canAddAxisObjToArray(fieldAxis)) | public boolean setFieldAxis (FieldAxis fieldAxis) { if (!canAddAxisObjToArray(fieldAxis)) return false; hasFieldAxis = false; if (getFieldAxis() != null) { // replace or removal List axisList = getAxes(); axisList.remove(0); if (fieldAxis != null) { axisList.add(0, fieldAxis); //replace the old fieldAxis with the new one hasFieldAxis = true; } } else { //add a fieldAxis where none prev existed. if (fieldAxis != null) { // only if we have something to add getAxes().add(0, fieldAxis);// getDataCube().incrementDimension(fieldAxis); // increment dimension hasFieldAxis = true; getDataCube().reset(); // reset data within the datacube // since we no longer can guarente internal ordering // as the field axis goes in slot "0". } } // IF we had an object, update the locators if (fieldAxis != null) { updateChildLocators(fieldAxis, "add"); } updateNotesLocationOrder(); // reset to the current order of the axes // may not be needed, but we do for all cases anyways //array doenst hold a dataformat anymore //each field along the fieldAxis should have dataformat // IF fieldAxis exists if (hasFieldAxis) { setDataFormat(null); } return true; } | 4483 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4483/f9ef49d85d2fd601e3c36c10a94473561db251a8/Array.java/clean/src/gov/nasa/gsfc/adc/xdf/Array.java | [
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dim.width, dim.height); | dim.width, dim.height); | public void run() { if (progressivePaintThread == thisThread) { Dimension dim = getSize(); paintImmediately(0, 0, dim.width, dim.height); } } | 46680 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46680/e850345f051e3b8e019c9c7e22e39cb95aeb5a31/JGVTComponent.java/buggy/sources/org/apache/batik/swing/gvt/JGVTComponent.java | [
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public void setValue( Object object, Object value) | public void setValue( Object object, Object value) | public void setValue( Object object, Object value) throws IllegalStateException, IllegalArgumentException { try { KeyGeneratorDef target = (KeyGeneratorDef) object; target.setAlias( (java.lang.String) value); } catch (Exception ex) { throw new IllegalStateException(ex.toString()); } } | 3614 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3614/d7fabc686ef68f29e8236fd9afc60109670d1fd4/KeyGeneratorDefDescriptor.java/clean/trunk/castor-2002/castor/src/main/org/exolab/castor/mapping/xml/KeyGeneratorDefDescriptor.java | [
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public boolean isRemoved() { | protected boolean isRemoved() { | public boolean isRemoved() { return removed; } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/c6cdb64c69aa98d81cdbb14125043293310564cc/PendingUpdateAdapter.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/progress/PendingUpdateAdapter.java | [
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FontSizeSection fontSizeSection = new FontSizeSection( fontFamilyProvider.getDisplayName( ), | FontSizeSection fontSizeSection = new FontSizeSection( fontSizeProvider.getDisplayName( ), | void buildContent( ) { // Defines providers. IDescriptorProvider nameProvider = new TextPropertyDescriptorProvider( ReportItemHandle.NAME_PROP, ReportDesignConstants.TEXT_ITEM ); IDescriptorProvider contentTypeProvider = new ComboPropertyDescriptorProvider( TextItemHandle.CONTENT_TYPE_PROP, ReportDesignConstants.TEXT_ITEM ); IDescriptorProvider styleProvider = new SimpleComboPropertyDescriptorProvider( ReportItemHandle.STYLE_PROP, ReportDesignConstants.REPORT_ITEM ); IDescriptorProvider fontFamilyProvider = new ComboPropertyDescriptorProvider( StyleHandle.FONT_FAMILY_PROP, ReportDesignConstants.STYLE_ELEMENT ); IDescriptorProvider fontSizeProvider = new FontSizePropertyDescriptorProvider( StyleHandle.FONT_SIZE_PROP, ReportDesignConstants.STYLE_ELEMENT ); IDescriptorProvider colorProvider = new ColorPropertyDescriptorProvider( StyleHandle.COLOR_PROP, ReportDesignConstants.STYLE_ELEMENT ); IDescriptorProvider bgColorProvider = new ColorPropertyDescriptorProvider( StyleHandle.BACKGROUND_COLOR_PROP, ReportDesignConstants.STYLE_ELEMENT ); IDescriptorProvider[] fontStyleProviders = createFontStyleProviders( ); // Defines sections. TextSection nameSection = new TextSection( nameProvider.getDisplayName( ), container, true ); Section seperator1Section = new SeperatorSection( container, SWT.HORIZONTAL ); ComboSection contentTypeSection = new ComboSection( contentTypeProvider.getDisplayName( ), container, true ); SimpleComboSection styleSection = new SimpleComboSection( styleProvider.getDisplayName( ), container, true ); Section seperator2Section = new SeperatorSection( container, SWT.HORIZONTAL ); ComboSection fontFamilySection = new ComboSection( fontFamilyProvider.getDisplayName( ), container, true ); FontSizeSection fontSizeSection = new FontSizeSection( fontFamilyProvider.getDisplayName( ), container, true ); ColorSection colorSection = new ColorSection( colorProvider.getDisplayName( ), container, true ); ColorSection bgColorSection = new ColorSection( bgColorProvider.getDisplayName( ), container, true ); FontStyleSection fontStyleSection = new FontStyleSection( container, true, true ); // Sets providers. nameSection.setProvider( nameProvider ); contentTypeSection.setProvider( contentTypeProvider ); styleSection.setProvider( styleProvider ); fontFamilySection.setProvider( fontFamilyProvider ); fontSizeSection.setProvider( fontSizeProvider ); colorSection.setProvider( colorProvider ); bgColorSection.setProvider( bgColorProvider ); fontStyleSection.setProviders( fontStyleProviders ); // Sets widths. nameSection.setWidth( 200 ); contentTypeSection.setWidth( 200 ); styleSection.setWidth( 200 ); fontFamilySection.setWidth( 200 ); fontSizeSection.setWidth( 200 ); colorSection.setWidth( 200 ); bgColorSection.setWidth( 200 ); fontStyleSection.setWidth( 200 ); // Sets layout num. nameSection.setLayoutNum( 6 ); contentTypeSection.setLayoutNum( 2 ); styleSection.setLayoutNum( 4 ); fontFamilySection.setLayoutNum( 2 ); fontSizeSection.setLayoutNum( 4 ); colorSection.setLayoutNum( 2 ); bgColorSection.setLayoutNum( 4 ); fontStyleSection.setLayoutNum( 6 ); // Sets fill grid num. nameSection.setGridPlaceholder( 4, true ); contentTypeSection.setGridPlaceholder( 0, true ); styleSection.setGridPlaceholder( 2, true ); fontFamilySection.setGridPlaceholder( 0, true ); fontSizeSection.setGridPlaceholder( 2, true ); colorSection.setGridPlaceholder( 0, true ); bgColorSection.setGridPlaceholder( 2, true ); fontStyleSection.setGridPlaceholder( 3, true ); // Adds sections into container page. addSection( PageSectionId.TEXT_NAME, nameSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_SEPERATOR_1, seperator1Section ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_CONTENT_TYPE, contentTypeSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_STYLE, styleSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_FONT_FAMILY, fontFamilySection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_FONT_SIZE, fontSizeSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_COLOR, colorSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_BACKGROUND_COLOR, bgColorSection ); //$NON-NLS-1$ addSection( PageSectionId.TEXT_FONT_STYLE, fontStyleSection ); //$NON-NLS-1$ createSections( ); layoutSections( ); } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/69ae581d294eb85ae0d7af113b9ba34f46abfb72/TextPage.java/clean/UI/org.eclipse.birt.report.designer.ui.views/src/org/eclipse/birt/report/designer/internal/ui/views/attributes/page/TextPage.java | [
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private int switchDataSet( String datasetName ) throws ChartException { int bCancel = Window.OK; if ( getDataServiceProvider( ).getBoundDataSet( ) != null && getDataServiceProvider( ).getBoundDataSet( ) .equals( datasetName ) ) { return bCancel; } try { String oldDataSetName = getDataServiceProvider( ).getBoundDataSet( ); getDataServiceProvider( ).startDataBinding( ); // Clear old dataset and preview data getDataServiceProvider( ).setDataSet( datasetName ); tablePreview.clearContents( ); // Popup data binding if ( getDataServiceProvider( ).getBoundDataSet( ) != null || getDataServiceProvider( ).getReportDataSet( ) != null ) { bCancel = getDataServiceProvider( ).invoke( IDataServiceProvider.COMMAND_EDIT_BINDING ); } if ( bCancel == Window.CANCEL ) { getDataServiceProvider( ).rollbackDataBinding( ); datasetName = oldDataSetName; } else { getDataServiceProvider( ).commitDataBinding( ); } // Try to get report data set if ( datasetName == null ) { datasetName = getDataServiceProvider( ).getReportDataSet( ); } if ( datasetName != null ) { switchDataTable( ); } else { tablePreview.createDummyTable( ); } tablePreview.layout( ); } catch ( Throwable t ) { throw new ChartException( ChartEnginePlugin.ID, ChartException.DATA_BINDING, t ); } DataDefinitionTextManager.getInstance( ).refreshAll( ); doLivePreview( ); return bCancel; } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/8005353d33409f5164b0bfcc523207bf2c5c497b/TaskSelectData.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/wizard/TaskSelectData.java | [
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cv.visitMethodInsn(INVOKESPECIAL, innerClassinternalName, "<init>", prototype + ")V"); | cv.visitMethodInsn(INVOKESPECIAL, innerClassinternalName, "<init>", BytecodeHelper.getMethodDescriptor("void", localVariableParams )); | public void visitClosureExpression(ClosureExpression expression) { ClassNode innerClass = createClosureClass(expression); addInnerClass(innerClass); String innerClassinternalName = helper.getClassInternalName(innerClass.getName()); ClassNode owner = innerClass.getOuterClass(); String ownerTypeName = owner.getName(); if (classNode.isStaticClass() || isStaticMethod()) { ownerTypeName = "java.lang.Class"; } passingClosureParams = true; List constructors = innerClass.getConstructors(); ConstructorNode node = (ConstructorNode) constructors.get(0); Parameter[] localVariableParams = node.getParameters(); for (int i = 2; i < localVariableParams.length; i++) { Parameter param = localVariableParams[i]; String name = param.getName(); if (variableStack.get(name) == null && classNode.getField(name) == null) { defineVariable(name, "java.lang.Object"); } } /* if (classNode instanceof InnerClassNode) { // lets load the outer this int paramIdx = defineVariable(createVariableName("iterator"), "java.lang.Object", false).getIndex(); cv.visitVarInsn(ALOAD, 0); cv.visitFieldInsn(GETFIELD, internalClassName, "owner", helper.getTypeDescription(ownerTypeName)); cv.visitVarInsn(ASTORE, paramIdx); cv.visitTypeInsn(NEW, innerClassinternalName); cv.visitInsn(DUP); cv.visitVarInsn(ALOAD, paramIdx); } else { */ cv.visitTypeInsn(NEW, innerClassinternalName); cv.visitInsn(DUP); if (isStaticMethod() || classNode.isStaticClass()) { visitClassExpression(new ClassExpression(ownerTypeName)); } else { cv.visitVarInsn(ALOAD, 0); } /* } */ if (innerClass.getSuperClass().equals("groovy.lang.Closure")) { if (isStaticMethod()) { /** * @todo could maybe stash this expression in a JVM variable * from previous statement above */ visitClassExpression(new ClassExpression(ownerTypeName)); } else { cv.visitVarInsn(ALOAD, 0); } } String prototype = "(L" + helper.getClassInternalName(ownerTypeName) + ";Ljava/lang/Object;"; // now lets load the various parameters we're passing for (int i = 2; i < localVariableParams.length; i++) { Parameter param = localVariableParams[i]; String name = param.getName(); if (variableStack.get(name) == null) { visitFieldExpression(new FieldExpression(classNode.getField(name))); } else { visitVariableExpression(new VariableExpression(name)); } prototype = prototype + "L" + helper.getClassInternalName(param.getType()) + ";"; } passingClosureParams = false; // we may need to pass in some other constructors cv.visitMethodInsn(INVOKESPECIAL, innerClassinternalName, "<init>", prototype + ")V"); } | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/9411e347dd46bbc42695d463bec72ecaed0a490a/ClassGenerator.java/clean/src/main/org/codehaus/groovy/classgen/ClassGenerator.java | [
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this.listElements = new Vector(); | public VueDPGraphe (DefinitionProcessus defProc ) { // la vue observe le modle defProc.addObserver (this) ; // le diagramme au dpart est vide this.setModele(new MDDiagramme()); this.setModel(Gmodele); this.setOpaque(true); this.setLayout(null); // initialiser les listes d'lments this.elements = new Vector(); this.liens = new Vector(); this.selection = new Vector(); // par dfault, on utilise l'outil de slection this.diagramTool = new OSelection(this); // ajouter les controleurs this.addMouseListener(this); this.addMouseMotionListener(this); this.zone_affichage = this.getSize(); this.setPreferredSize(this.zone_affichage); this.setAutoscrolls(true); // on met la couleur par dfaut au diagramme modele.setFillColor(new Color(Integer.parseInt(Application.getApplication().getConfigPropriete("couleur_fond_diagrmme")))); //on peut aussi dposer des objets dans l'arbre drop target new DropTarget(this, DnDConstants.ACTION_COPY_OR_MOVE, this, true); this.setFocusable(true); } | 9761 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9761/599d625574482d45f40f2a723d91fbf758c8842d/VueDPGraphe.java/buggy/isinit/src/iepp/ui/iedition/VueDPGraphe.java | [
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if (!started) | if (!started && ((LifecycleStrategy) getDelegate()).hasLifecycle(comp.getClass())) | public void stop(PicoContainer container) { if ( delegateSupportsLifecycle() ){ if (disposed) throw new IllegalStateException("Already disposed"); if (!started) throw new IllegalStateException("Not started"); stop(getComponentInstance(container)); started = false; } } | 9344 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9344/b132f9fddc08b2c04e00ff3cf50a53b13b978237/CachingComponentAdapter.java/clean/java/picocontainer/trunk/container/src/java/org/picocontainer/defaults/CachingComponentAdapter.java | [
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Event(Locator location) { this.location = new LocatorImpl(location); | Event(Locator locator) { this.location = locator == null ? NULL_LOCATOR : new LocatorImpl(locator); | Event(Locator location) { this.location = new LocatorImpl(location); } | 46428 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46428/a9caa46e9bdb31d9cff6301cc67811bf0253bd00/JXFormsGenerator.java/clean/src/scratchpad/src/org/apache/cocoon/generation/JXFormsGenerator.java | [
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(SpectrumAnalyzer.PROP_NUMBER_FFT_POINTS, 512); | (prefix + SpectrumAnalyzer.PROP_NUMBER_FFT_POINTS, 512); | public void setProperties(SphinxProperties props) { sampleRate = props.getInt(FrontEnd.PROP_SAMPLE_RATE, 16000); minFreq = props.getDouble(PROP_MIN_FREQ, 130); maxFreq = props.getDouble(PROP_MAX_FREQ, 6800); numberFilters = props.getInt(PROP_NUMBER_FILTERS, 40); numberFftPoints = props.getInt (SpectrumAnalyzer.PROP_NUMBER_FFT_POINTS, 512); } | 8350 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8350/bda3644280238e1081bb45ccd0b754fd70a164ff/PLPFilterbank.java/buggy/edu/cmu/sphinx/frontend/plp/PLPFilterbank.java | [
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trailingIdx++; today++; } retCode = MA(0, outIdx - 1, tempBuffer, optInFastD_Period, optInFastD_MAType, outBegIdx, outNbElement, outFastD); | while( today <= endIdx ) { | public TA_RetCode STOCHF(int startIdx, int endIdx, double inHigh[], double inLow[], double inClose[], int optInFastK_Period, int optInFastD_Period, TA_MAType optInFastD_MAType, MInteger outBegIdx, MInteger outNbElement, double outFastK[], double outFastD[]) { TA_RetCode retCode; double lowest, highest, tmp, diff; double[] tempBuffer; int outIdx, lowestIdx, highestIdx; int lookbackTotal, lookbackK, lookbackFastD; int trailingIdx, today, i; if (startIdx < 0) return TA_RetCode.TA_OUT_OF_RANGE_START_INDEX; if ((endIdx < 0) || (endIdx < startIdx)) return TA_RetCode.TA_OUT_OF_RANGE_END_INDEX; if ((int) optInFastK_Period == (Integer.MIN_VALUE )) optInFastK_Period = 5; else if (((int) optInFastK_Period < 1) || ((int) optInFastK_Period > 100000)) return TA_RetCode.TA_BAD_PARAM; if ((int) optInFastD_Period == (Integer.MIN_VALUE )) optInFastD_Period = 3; else if (((int) optInFastD_Period < 1) || ((int) optInFastD_Period > 100000)) return TA_RetCode.TA_BAD_PARAM; lookbackK = optInFastK_Period - 1; lookbackFastD = MA_Lookback(optInFastD_Period, optInFastD_MAType); lookbackTotal = lookbackK + lookbackFastD; if (startIdx < lookbackTotal) startIdx = lookbackTotal; if (startIdx > endIdx) { outBegIdx.value = 0; outNbElement.value = 0; return TA_RetCode.TA_SUCCESS; } outIdx = 0; trailingIdx = startIdx - lookbackTotal; today = trailingIdx + lookbackK; lowestIdx = highestIdx = -1; diff = highest = lowest = 0.0; if ((outFastK == inHigh) || (outFastK == inLow) || (outFastK == inClose)) { tempBuffer = outFastK; } else if ((outFastD == inHigh) || (outFastD == inLow) || (outFastD == inClose)) { tempBuffer = outFastD; } else { tempBuffer = new double[endIdx - today + 1]; } while (today <= endIdx) { tmp = inLow[today]; if (lowestIdx < trailingIdx) { lowestIdx = trailingIdx; lowest = inLow[lowestIdx]; i = lowestIdx; while (++i <= today) { tmp = inLow[i]; if (tmp < lowest) { lowestIdx = i; lowest = tmp; } } diff = (highest - lowest) / 100.0; } else if (tmp <= lowest) { lowestIdx = today; lowest = tmp; diff = (highest - lowest) / 100.0; } tmp = inHigh[today]; if (highestIdx < trailingIdx) { highestIdx = trailingIdx; highest = inHigh[highestIdx]; i = highestIdx; while (++i <= today) { tmp = inHigh[i]; if (tmp > highest) { highestIdx = i; highest = tmp; } } diff = (highest - lowest) / 100.0; } else if (tmp >= highest) { highestIdx = today; highest = tmp; diff = (highest - lowest) / 100.0; } if (diff != 0.0) tempBuffer[outIdx++] = (inClose[today] - lowest) / diff; else tempBuffer[outIdx++] = 0.0; trailingIdx++; today++; } retCode = MA(0, outIdx - 1, tempBuffer, optInFastD_Period, optInFastD_MAType, outBegIdx, outNbElement, outFastD); if ((retCode != TA_RetCode.TA_SUCCESS) || ((int) outNbElement.value) == 0) { ; outBegIdx.value = 0; outNbElement.value = 0; return retCode; } System.arraycopy(tempBuffer, 0, outFastK, 0, (int) outNbElement.value); ; if (retCode != TA_RetCode.TA_SUCCESS) { outBegIdx.value = 0; outNbElement.value = 0; return retCode; } outBegIdx.value = startIdx; return TA_RetCode.TA_SUCCESS; } | 7231 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7231/5df8081f2a7211016256c0f481213a987e02947a/Core.java/clean/ta-lib/java/src/TA/Lib/Core.java | [
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public String getStatusString() { | public synchronized String getStatusString() { | public String getStatusString() { if(status == SUCCESS) return "SUCCESS"; if(status == ROUTE_NOT_FOUND) return "ROUTE NOT FOUND"; if(status == NOT_FINISHED) return "NOT FINISHED"; if(status == INTERNAL_ERROR) return "INTERNAL ERROR"; if(status == TIMED_OUT) return "TIMED OUT"; if(status == GENERATED_REJECTED_OVERLOAD) return "GENERATED REJECTED OVERLOAD"; if(status == ROUTE_REALLY_NOT_FOUND) return "ROUTE REALLY NOT FOUND"; return "UNKNOWN STATUS CODE: "+status; } | 49933 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49933/18bdac5b045940cab8c77eb1e775cefcdda23e0a/CHKInsertSender.java/buggy/src/freenet/node/CHKInsertSender.java | [
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if (!file.isWritable()) { | if (file != null && !file.isWritable()) { | private FileInfo[] createFileInfos(VirtualFile[] files) { List<FileInfo> fileInfos = new ArrayList<FileInfo>(); for (int i = 0; i < files.length; i++) { final VirtualFile file = files[i]; if (!file.isWritable()) { fileInfos.add(new FileInfo(file, myProject)); } } return fileInfos.toArray(new FileInfo[fileInfos.size()]); } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/c960e2c5d7f048a2889777d44d40aecf931eadc7/ReadonlyStatusHandlerImpl.java/buggy/source/com/intellij/openapi/vcs/readOnlyHandler/ReadonlyStatusHandlerImpl.java | [
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suite.addTestSuite( QuantileNormalizerTest.class ); suite.addTestSuite( RMATest.class ); suite.addTestSuite( RMABackgroundAdjusterTest.class ); suite.addTestSuite( TwoColorArrayLoessNormalizerTest.class ); | public static Test suite() { TestSuite suite = new TestSuite( "Test for edu.columbia.gemma" ); // $JUnit-BEGIN$ // analysis suite.addTestSuite( QuantileNormalizerTest.class ); suite.addTestSuite( RMATest.class ); suite.addTestSuite( RMABackgroundAdjusterTest.class ); suite.addTestSuite( TwoColorArrayLoessNormalizerTest.class ); // common.auditAndSecurity suite.addTestSuite( AuditTrailDaoTest.class ); suite.addTestSuite( UserRoleServiceImplTest.class ); suite.addTestSuite( UserServiceImplTest.class ); suite.addTestSuite( UserDaoImplTest.class ); // common.description suite.addTestSuite( BibliographicReferenceDaoImplTest.class ); suite.addTestSuite( BibliographicReferenceServiceImplTest.class ); suite.addTestSuite( DatabaseEntryDaoImplTest.class ); suite.addTestSuite( ExternalDatabaseServiceImplTest.class ); suite.addTestSuite( LocalFileServiceImplTest.class ); // common.protocol suite.addTestSuite( ProtocolServiceTest.class ); // expression.experiment suite.addTestSuite( ExpressionExperimentServiceImplTest.class ); // externalDb -- test is in wrong place suite.addTestSuite( ExternalDatabaseTest.class ); // genome.gene suite.addTestSuite( CandidateGeneImplTest.class ); suite.addTestSuite( CandidateGeneListDAOImplTest.class ); suite.addTestSuite( CandidateGeneListImplTest.class ); suite.addTestSuite( CandidateGeneListServiceImplTest.class ); suite.addTestSuite( GeneServiceImplTest.class ); // genome.sequenceAnalysis suite.addTestSuite( BlatResultImplTest.class ); // loader.association suite.addTestSuite( Gene2GOAssociationParserTest.class ); // loader.description suite.addTestSuite( OntologyEntryLoaderIntegrationTest.class ); // loader.entrez.pubmed suite.addTestSuite( PubMedXMLFetcherTest.class ); suite.addTestSuite( PubMedXMLParserTest.class ); // loader.expression.arrayDesign suite.addTestSuite( AffyProbeReaderTest.class ); suite.addTestSuite( ArrayDesignParserIntegrationTest.class ); suite.addTestSuite( IlluminaProbeReaderTest.class ); // loader.expression.arrayExpress suite.addTestSuite( DataFileFetcherTest.class ); // loader.expression.geo // suite.addTestSuite( GeoDatasetServiceIntegrationTest.class ); suite.addTestSuite( GeoFamilyParserTest.class ); suite.addTestSuite( RawDataFetcherTest.class ); suite.addTestSuite( GeoConverterTest.class ); // loader.expression.mage suite.addTestSuite( MageMLParserTest.class ); suite.addTestSuite( MageLoadTest.class ); // loader.expression.smd suite.addTestSuite( SMDManagerImplTest.class ); // loader.expression.smd.model suite.addTestSuite( ExptMetaTest.class ); suite.addTestSuite( PublicationMetaTest.class ); // loader.genome.gene suite.addTestSuite( NCBIGeneParserTest.class ); // loader.loaderutils suite.addTestSuite( BeanPropertyCompleterTest.class ); // security suite.addTestSuite( SecurityIntegrationTest.class ); // security.interceptor suite.addTestSuite( PersistAclInterceptorTest.class ); suite.addTestSuite( AuditInterceptorTest.class ); // sequence suite.addTestSuite( QtlDaoImplTest.class ); // tools suite.addTestSuite( AffyBatchTest.class ); suite.addTestSuite( GoldenPathTest.class ); suite.addTestSuite( SequenceManipulationTest.class ); suite.addTestSuite( BlatTest.class ); suite.addTestSuite( MArrayRawTest.class ); // web.controller.common.auditAndSecurity suite.addTestSuite( SignupControllerTest.class ); // web.controller.entrez.pubmed suite.addTestSuite( ArrayDesignControllerTest.class ); // web.controller.flow.entrez.pubmed suite.addTestSuite( SearchPubMedFlowTests.class ); suite.addTestSuite( DetailBibRefFlowTests.class ); // $JUnit-END$ return suite; } | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/1aa223c9442040d0cb2ce26afedeedff6105f5a2/AllTests.java/buggy/test/edu/columbia/gemma/AllTests.java | [
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else if (page.isRenderingStale(Integer.parseInt(request.getParameter("rendering")))) { onStaleRendering(page); return true; } | private boolean callComponentListener() { // Get any component parameter final String path = request.getParameter("component"); if (path != null) { // Get page from path log.debug("Getting page for path " + path); final Page page = session.getPage(path); // Does page exist? if (page != null) { // Is page stale? if (page.isStale()) { onStalePage(); return true; } else if (page.isRenderingStale(Integer.parseInt(request.getParameter("rendering")))) { onStaleRendering(page); return true; } else { invokeInterface(page, path, request.getParameter("interface")); return true; } } else { onExpiredPage(); return true; } } else { // Get path info final String pathInfo = ((WebRequest)request).getHttpServletRequest().getPathInfo(); if (pathInfo != null) { // Get resource for path final Resource resource = Resource.forPath(pathInfo.substring(1)); if (resource != null) { // Request resource resource.onResourceRequested(); return true; } } } return false; } | 46434 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46434/027891be3bb07c2ea1ebbcb0f11d4d5ee82f6cf1/WebRequestCycle.java/buggy/wicket/src/java/wicket/protocol/http/WebRequestCycle.java | [
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getEnclosingTypeName(), | isEnclosingTypeSelected() ? getEnclosingTypeName() : null, | public void createClass(IProgressMonitor monitor) { try { fCodeGenerator = new NewClassCodeGenerator( getHeaderFileFullPath(), getSourceFileFullPath(), getClassTypeName(),// isNamespaceButtonSelected() ? getEnclosingTypeName() : null, getEnclosingTypeName(), getBaseClasses(), getCheckedMethodStubs()); fCodeGenerator.createClass(monitor); } catch (CodeGeneratorException e) { // TODO Auto-generated catch block e.printStackTrace(); } catch (CoreException e) { // TODO Auto-generated catch block e.printStackTrace(); } catch (InterruptedException e) { // TODO Auto-generated catch block e.printStackTrace(); } } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/0feec5d746509786a6956197b6ef69891abf1347/NewClassCreationWizardPage.java/clean/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/wizards/classwizard/NewClassCreationWizardPage.java | [
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} | }*/ | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (methodArgs == null) { methodArgs = new Object[0]; } if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; System.arraycopy(methodArgs, args.length - 1, restArray, 0, methodArgs.length - (args.length - 1)); System.arraycopy(methodArgs, 0, newMethodArgs, 0, args.length - 1); newMethodArgs[args.length - 1] = restArray; methodArgs = newMethodArgs; } if (staticMethod) { Object[] newMethodArgs = new Object[methodArgs.length + 1]; System.arraycopy(methodArgs, 0, newMethodArgs, 1, methodArgs.length); newMethodArgs[0] = ruby; methodArgs = newMethodArgs; } try { return (RubyObject)getMethod().invoke(staticMethod ? null : recv, methodArgs); } catch (IllegalAccessException iaExcptn) { throw new RuntimeException("IllegalAccessException: Cannot invoke method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); } catch (IllegalArgumentException iaExcptn) { throw new RuntimeException("IllegalArgumentException: Cannot invoke method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); } catch (InvocationTargetException itExcptn) { throw new RuntimeException("InvocationTargetException: Cannot invoke method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); } } | 52337 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52337/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/ReflectionCallbackMethod.java/clean/org/jruby/core/ReflectionCallbackMethod.java | [
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public PublicKey decodePublicKey(byte[] input) { log.entering(this.getClass().getName(), "decodePublicKey()", input); if (input == null) throw new InvalidParameterException("Input bytes MUST NOT be null"); BigInteger n, e; DERReader der = new DERReader(input); try { DERValue derSPKI = der.read(); DerUtil.checkIsConstructed(derSPKI, "Wrong SubjectPublicKeyInfo field"); DERValue derAlgorithmID = der.read(); DerUtil.checkIsConstructed(derAlgorithmID, "Wrong AlgorithmIdentifier field"); DERValue derOID = der.read(); if (! (derOID.getValue() instanceof OID)) throw new InvalidParameterException("Wrong Algorithm field"); OID algOID = (OID) derOID.getValue(); if (! algOID.equals(RSA_ALG_OID)) throw new InvalidParameterException("Unexpected OID: " + algOID); // rfc-2459 states that this field is OPTIONAL but NULL if/when present DERValue val = der.read(); if (val.getTag() == DER.NULL) val = der.read(); if (! (val.getValue() instanceof BitString)) throw new InvalidParameterException("Wrong SubjectPublicKey field"); byte[] spkBytes = ((BitString) val.getValue()).toByteArray(); der = new DERReader(spkBytes); val = der.read(); DerUtil.checkIsConstructed(derAlgorithmID, "Wrong subjectPublicKey field"); val = der.read(); DerUtil.checkIsBigInteger(val, "Wrong modulus field"); n = (BigInteger) val.getValue(); val = der.read(); DerUtil.checkIsBigInteger(val, "Wrong publicExponent field"); e = (BigInteger) val.getValue(); } catch (IOException x) { InvalidParameterException y = new InvalidParameterException(); y.initCause(x); throw y; } PublicKey result = new GnuRSAPublicKey(Registry.X509_ENCODING_ID, n, e); log.exiting(this.getClass().getName(), "decodePublicKey()", result); return result; } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/b3a024d60c5143b61f97b230d24e7ea41f17a0fd/RSAKeyPairX509Codec.java/buggy/core/src/classpath/gnu/gnu/java/security/key/rsa/RSAKeyPairX509Codec.java | [
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private static String generateSql(QuerySpec spec, java.sql.Connection jdbcConnection) { | private static String generateSql(QuerySpec spec, java.sql.Connection jdbcConnection, boolean aggregate) { | private static String generateSql(QuerySpec spec, java.sql.Connection jdbcConnection) { final DatabaseMetaData metaData; try { metaData = jdbcConnection.getMetaData(); } catch (SQLException e) { throw Util.getRes().newInternal("while loading segment", e); } RolapStar star = spec.getStar(); // are there any distinct measures? int distinctCount = 0; for (int i = 0, measureCount = spec.getMeasureCount(); i < measureCount; i++) { RolapStar.Measure measure = spec.getMeasure(i); if (measure.aggregator.distinct) { distinctCount++; } } SqlQuery sqlQuery = new SqlQuery(metaData); final boolean wrapInDistinct = distinctCount > 0 && !sqlQuery.allowsCountDistinct(); if (wrapInDistinct) { // Generate something like // select d0, d1, count(m0) // from ( // select distinct x as d0, y as d1, z as m0 // from t) as foo // group by d0, d1 final SqlQuery innerSqlQuery = sqlQuery; innerSqlQuery.setDistinct(true); final SqlQuery outerSqlQuery = new SqlQuery(metaData); // add constraining dimensions RolapStar.Column[] columns = spec.getColumns(); int arity = columns.length; for (int i = 0; i < arity; i++) { RolapStar.Column column = columns[i]; RolapStar.Table table = column.table; if (table.isFunky()) { // this is a funky dimension -- ignore for now continue; } table.addToFrom(innerSqlQuery, false, true); String expr = column.getExpression(innerSqlQuery); Object[] constraints = spec.getConstraints(i); if (constraints != null) { innerSqlQuery.addWhere( expr + " in " + column.quoteValues(constraints)); } final String alias = "d" + i; innerSqlQuery.addSelect(expr, alias); outerSqlQuery.addSelect(alias); outerSqlQuery.addGroupBy(alias); } for (int i = 0, measureCount = spec.getMeasureCount(); i < measureCount; i++) { RolapStar.Measure measure = spec.getMeasure(i); Util.assertTrue(measure.table == star.factTable); star.factTable.addToFrom(innerSqlQuery, false, true); final String alias = "m" + i; innerSqlQuery.addSelect(measure.getExpression(outerSqlQuery), alias); outerSqlQuery.addSelect( measure.aggregator.getNonDistinctAggregator().getExpression( alias)); } outerSqlQuery.addFrom(innerSqlQuery, "foo", true); sqlQuery = outerSqlQuery; } else { // add constraining dimensions RolapStar.Column[] columns = spec.getColumns(); int arity = columns.length; for (int i = 0; i < arity; i++) { RolapStar.Column column = columns[i]; RolapStar.Table table = column.table; if (table.isFunky()) { // this is a funky dimension -- ignore for now continue; } table.addToFrom(sqlQuery, false, true); String expr = column.getExpression(sqlQuery); Object[] constraints = spec.getConstraints(i); if (constraints != null) { sqlQuery.addWhere( expr + " in " + column.quoteValues(constraints)); } sqlQuery.addSelect(expr); sqlQuery.addGroupBy(expr); } // add measures for (int i = 0, measureCount = spec.getMeasureCount(); i < measureCount; i++) { RolapStar.Measure measure = spec.getMeasure(i); Util.assertTrue(measure.table == star.factTable); star.factTable.addToFrom(sqlQuery, false, true); sqlQuery.addSelect( measure.aggregator.getExpression(measure.getExpression(sqlQuery))); } } return sqlQuery.toString(); } | 51263 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51263/d09f5ca50f0aebe9865a143cb6018a3ce6e2652c/AggregationManager.java/buggy/src/main/mondrian/rolap/agg/AggregationManager.java | [
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public org.quickfix.field.ExpireTime getExpireTime() throws FieldNotFound { org.quickfix.field.ExpireTime value = new org.quickfix.field.ExpireTime(); | public quickfix.field.ExpireTime getExpireTime() throws FieldNotFound { quickfix.field.ExpireTime value = new quickfix.field.ExpireTime(); | public org.quickfix.field.ExpireTime getExpireTime() throws FieldNotFound { org.quickfix.field.ExpireTime value = new org.quickfix.field.ExpireTime(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/QuoteRequestReject.java/buggy/src/java/src/quickfix/fix43/QuoteRequestReject.java | [
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getSession().getUnitOfWork().registerDirty(this); | registerDirty(); | public synchronized OutputStream getOutputStream() throws RepositoryException { if (getLogger().isDebugEnabled()) getLogger().debug("Get OutputStream for " + getSourceURI()); try { if (!isLocked()) { throw new RuntimeException("Cannot write to source [" + getSourceURI() + "]: not locked!"); } if (getSession().getUnitOfWork() == null) { throw new RuntimeException("Cannot write to source outside of a transaction (UnitOfWork is null)!"); } getSession().getUnitOfWork().registerDirty(this); } catch (Exception e) { throw new RuntimeException(e); } return new NodeOutputStream(); } | 45951 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45951/cc3f7dfe1d92a71fc566359639191acc6aed652e/SourceNode.java/clean/src/java/org/apache/lenya/cms/repository/SourceNode.java | [
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prepareContent(false); | prepareContent(false); | protected void initWorkplaceRequestValues(CmsWorkplaceSettings settings, HttpServletRequest request) { // fill the parameter values in the get/set methods fillParamValues(request); // set the dialog type setParamDialogtype(EDITOR_TYPE); // Initialize a page object from the temporary file if (getParamTempfile() != null && !"null".equals(getParamTempfile())) { try { m_file = getCms().readFile(this.getParamTempfile(), CmsResourceFilter.ALL); m_page = CmsXmlPageFactory.unmarshal(getCms(), m_file); } catch (CmsException e) { // error during initialization try { showErrorPage(this, e); } catch (JspException exc) { // should usually never happen if (LOG.isInfoEnabled()) { LOG.info(exc); } } } } // set the action for the JSP switch if (EDITOR_SAVE.equals(getParamAction())) { setAction(ACTION_SAVE); } else if (EDITOR_SAVEEXIT.equals(getParamAction())) { setAction(ACTION_SAVEEXIT); } else if (EDITOR_SAVEACTION.equals(getParamAction())) { setAction(ACTION_SAVEACTION); try { actionDirectEdit(); } catch (Exception e) { // should usually never happen if (LOG.isInfoEnabled()) { LOG.info(e); } } setAction(ACTION_EXIT); } else if (EDITOR_EXIT.equals(getParamAction())) { setAction(ACTION_EXIT); } else if (EDITOR_CHANGE_ELEMENT.equals(getParamAction())) { setAction(ACTION_SHOW); actionChangeBodyElement(); // prepare the content String for the editor prepareContent(false); } else if (EDITOR_CLEANUP.equals(getParamAction())) { setAction(ACTION_SHOW); actionCleanupBodyElement(); // prepare the content String for the editor prepareContent(false); } else if (EDITOR_SHOW.equals(getParamAction())) { setAction(ACTION_SHOW); // prepare the content String for the editor prepareContent(false); } else if (EDITOR_PREVIEW.equals(getParamAction())) { setAction(ACTION_PREVIEW); } else { // initial call of editor, initialize page and page parameters setAction(ACTION_DEFAULT); try { // lock resource if autolock is enabled in configuration if ("true".equals(getParamDirectedit())) { // set a temporary lock in direct edit mode checkLock(getParamResource(), CmsLock.C_MODE_TEMP); } else { // set common lock checkLock(getParamResource()); } // create the temporary file setParamTempfile(createTempFile()); // initialize a page object from the created temporary file m_file = getCms().readFile(this.getParamTempfile(), CmsResourceFilter.ALL); m_page = CmsXmlPageFactory.unmarshal(getCms(), m_file); } catch (CmsException e) { // error during initialization try { showErrorPage(this, e); } catch (JspException exc) { // should usually never happen if (LOG.isInfoEnabled()) { LOG.info(exc); } } } // set the initial body language & name if not given in request parameters if (getParamElementlanguage() == null) { initBodyElementLanguage(); } if (getParamElementname() == null) { initBodyElementName(null); } // initialize the editor content initContent(); // prepare the content String for the editor prepareContent(false); } } | 51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/2fa0efcae8f9aa5971c7763269a3b033e9256d4b/CmsSimplePageEditor.java/buggy/src/org/opencms/workplace/editors/CmsSimplePageEditor.java | [
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Field field = findField(refType); | Field field = findField(refType, context); | private Object evaluateField(Object object, EvaluationContextImpl context) throws EvaluateException { if (object instanceof ReferenceType) { ReferenceType refType = (ReferenceType)object; Field field = findField(refType); if (field == null || !field.isStatic()) { field = refType.fieldByName(myFieldName); } if (field == null || !field.isStatic()) { throw EvaluateExceptionUtil.createEvaluateException(DebuggerBundle.message("evaluation.error.no.static.field", myFieldName)); } myEvaluatedField = field; myEvaluatedQualifier = refType; return refType.getValue(field); } if (object instanceof ObjectReference) { ObjectReference objRef = (ObjectReference)object; ReferenceType refType = objRef.referenceType(); if (!(refType instanceof ClassType || refType instanceof ArrayType)) { throw EvaluateExceptionUtil.createEvaluateException(DebuggerBundle.message("evaluation.error.class.or.array.expected", myFieldName)); } // expressions like 'array.length' must be treated separately //noinspection HardCodedStringLiteral if (objRef instanceof ArrayReference && "length".equals(myFieldName)) { //noinspection HardCodedStringLiteral return DebuggerUtilsEx.createValue( context.getDebugProcess().getVirtualMachineProxy(), "int", ((ArrayReference)objRef).length() ); } Field field = findField(refType); if (field == null) { field = refType.fieldByName(myFieldName); } if (field == null) { throw EvaluateExceptionUtil.createEvaluateException(DebuggerBundle.message("evaluation.error.no.instance.field", myFieldName)); } myEvaluatedQualifier = field.isStatic()? (Object)refType : (Object)objRef; myEvaluatedField = field; return field.isStatic()? refType.getValue(field) : objRef.getValue(field); } if(object == null) { throw EvaluateExceptionUtil.createEvaluateException(new NullPointerException()); } throw EvaluateExceptionUtil.createEvaluateException(DebuggerBundle.message("evaluation.error.evaluating.field", myFieldName)); } | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/d9d82a5455e33c5fbaa5b9ebd016d08c54249284/FieldEvaluator.java/buggy/debugger/impl/com/intellij/debugger/engine/evaluation/expression/FieldEvaluator.java | [
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return null; } else { try { Field field = ref.getWrappedClass().getField(name); if (Modifier.isStatic(field.getModifiers()) && Modifier.isPublic(field.getModifiers()) && field.getType().equals(type)) { return field.get(ref.getWrappedInstance()); } } catch (NoSuchFieldException e) { } catch (IllegalAccessException e) { } | protected Object getPropertyValue(String name, Class type) { BeanWrapper ref = getReference(); if (ref.isReadableProperty(name) && ref.getPropertyType(name).isAssignableFrom(type)) { Object value = ref.getPropertyValue(name); if(value != null && type.isAssignableFrom(value.getClass())) { return value; } return null; } else { try { Field field = ref.getWrappedClass().getField(name); if (Modifier.isStatic(field.getModifiers()) && Modifier.isPublic(field.getModifiers()) && field.getType().equals(type)) { return field.get(ref.getWrappedInstance()); } } catch (NoSuchFieldException e) { // ignore } catch (IllegalAccessException e) { // ignore } } return null; } | 28089 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28089/f3501a936fa4b7198a64ec638260a4d7cca023ba/AbstractGrailsClass.java/clean/src/commons/org/codehaus/groovy/grails/commons/AbstractGrailsClass.java | [
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for (Enumeration e = in.questions.elements(); e.hasMoreElements(); ) { DNSEntry entry = (DNSEntry) e.nextElement(); | for (Iterator i = in.questions.iterator(); i.hasNext(); ) { DNSEntry entry = (DNSEntry) i.next(); | public void start() { // According to draft-cheshire-dnsext-multicastdns.txt // chapter "8 Responding": // We respond immediately if we know for sure, that we are // the only one who can respond to the query. // In all other cases, we respond within 20-120 ms. // // According to draft-cheshire-dnsext-multicastdns.txt // chapter "7.2 Multi-Packet Known Answer Suppression": // We respond after 20-120 ms if the query is truncated. boolean iAmTheOnlyOne = true; for (Enumeration e = in.questions.elements(); e.hasMoreElements(); ) { DNSEntry entry = (DNSEntry) e.nextElement(); if (entry instanceof DNSQuestion) { DNSQuestion q = (DNSQuestion) entry; iAmTheOnlyOne &= (q.type == DNSConstants.TYPE_SRV || q.type == DNSConstants.TYPE_TXT || q.type == DNSConstants.TYPE_A || host.name.equalsIgnoreCase(q.name) || services.containsKey(q.name.toLowerCase())); if (! iAmTheOnlyOne) { break; } } } int delay = (iAmTheOnlyOne && ! in.isTruncated()) ? 0 : DNSConstants.RESPONSE_MIN_WAIT_INTERVAL + random.nextInt(DNSConstants.RESPONSE_MAX_WAIT_INTERVAL - DNSConstants.RESPONSE_MIN_WAIT_INTERVAL + 1); if (debug > 2) System.out.println("JmDNS.Responder chosen delay="+delay); timer.schedule(this, delay); } | 6848 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6848/1e6f2e54fd57e639586c692aad031141bd691734/JmDNS.java/buggy/jmdns/src/javax/jmdns/JmDNS.java | [
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som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); | som.addAtomContainer(builder.newAtomContainer()); som.addAtomContainer(builder.newAtomContainer()); | public void testAddAtomContainer_AtomContainer() { SetOfAtomContainers som = new SetOfAtomContainers(); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); assertEquals(5, som.getAtomContainerCount()); // now test it to make sure it properly grows the array som.addAtomContainer(new org.openscience.cdk.AtomContainer()); som.addAtomContainer(new org.openscience.cdk.AtomContainer()); assertEquals(7, som.getAtomContainerCount()); } | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/67261c8143759a6ee4feb79dc1687d6dcfa25f40/SetOfAtomContainersTest.java/clean/src/org/openscience/cdk/test/SetOfAtomContainersTest.java | [
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parser.parse(getInputStream(document), createNodeOffsetHandler(this)); | parser.parse(getInputStream(document), createDocumentHandler(this, false)); | public void adjustOffsets(IDocument document) { try { SAXParserWrapper parser = new SAXParserWrapper(); parser.parse(getInputStream(document), createNodeOffsetHandler(this)); } catch (SAXException e) { } catch (IOException e) { } catch (ParserConfigurationException e) { } catch (FactoryConfigurationError e) { } } | 8783 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8783/5f54aeb0c6b0dedbd16348f38c2089aa976e950f/XMLEditingModel.java/buggy/ui/org.eclipse.pde.core/text/org/eclipse/pde/internal/core/text/XMLEditingModel.java | [
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logger.debug("corbaloc not null"); | public org.omg.CORBA.Object getRoot() { org.omg.CORBA.Object rootObj = null; if(nameServiceCorbaLoc != null) { logger.debug("corbaloc not null"); logger.info("Using name service corba loc=" + nameServiceCorbaLoc); rootObj = orb.string_to_object(nameServiceCorbaLoc); if(rootObj == null) { throw new RuntimeException("Unable to make an object from " + nameServiceCorbaLoc); } logger.debug("got root object"); } else { logger.debug("corbaloc is null, resolve initial references"); try { // get a reference to the Naming Service root_context rootObj = orb.resolve_initial_references("NameService"); } catch(org.omg.CORBA.ORBPackage.InvalidName e) { throw new RuntimeException("Unable to resolve from initial references", e); } if(rootObj == null) { throw new RuntimeException("Unable to resolve from initial references"); } } return rootObj; } | 52623 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52623/7370b9b75dffcd7af4928bfdfa92cef2bb0af023/FissuresNamingService.java/buggy/src/edu/sc/seis/fissuresUtil/namingService/FissuresNamingService.java | [
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public void testGreaterThan() throws Exception { final DeweyDecimal dd1 = new DeweyDecimal( DD1 ); final DeweyDecimal dd2 = new DeweyDecimal( DD2 ); final DeweyDecimal dd3 = new DeweyDecimal( DD3 ); final DeweyDecimal dd4 = new DeweyDecimal( DD4 ); final DeweyDecimal dd5 = new DeweyDecimal( DD5 ); assertTrue( "Bad: " + DD1 + " > " + DD1, !dd1.isGreaterThan( dd1 ) ); assertTrue( "Bad: " + DD1 + " > " + DD2, !dd1.isGreaterThan( dd2 ) ); assertTrue( "Bad: " + DD1 + " > " + DD3, !dd1.isGreaterThan( dd3 ) ); assertTrue( "Bad: " + DD1 + " < " + DD4, dd1.isGreaterThan( dd4 ) ); assertTrue( "Bad: " + DD1 + " > " + DD5, !dd1.isGreaterThan( dd5 ) ); assertTrue( "Bad: " + DD2 + " < " + DD1, dd2.isGreaterThan( dd1 ) ); assertTrue( "Bad: " + DD2 + " > " + DD2, !dd2.isGreaterThan( dd2 ) ); assertTrue( "Bad: " + DD2 + " > " + DD3, !dd2.isGreaterThan( dd3 ) ); assertTrue( "Bad: " + DD2 + " < " + DD4, dd2.isGreaterThan( dd4 ) ); assertTrue( "Bad: " + DD2 + " > " + DD5, !dd2.isGreaterThan( dd5 ) ); assertTrue( "Bad: " + DD3 + " < " + DD1, dd3.isGreaterThan( dd1 ) ); assertTrue( "Bad: " + DD3 + " < " + DD2, dd3.isGreaterThan( dd2 ) ); assertTrue( "Bad: " + DD3 + " > " + DD3, !dd3.isGreaterThan( dd3 ) ); assertTrue( "Bad: " + DD3 + " < " + DD4, dd3.isGreaterThan( dd4 ) ); assertTrue( "Bad: " + DD3 + " > " + DD5, !dd3.isGreaterThan( dd5 ) ); assertTrue( "Bad: " + DD4 + " > " + DD1, !dd4.isGreaterThan( dd1 ) ); assertTrue( "Bad: " + DD4 + " > " + DD2, !dd4.isGreaterThan( dd2 ) ); assertTrue( "Bad: " + DD4 + " > " + DD3, !dd4.isGreaterThan( dd3 ) ); assertTrue( "Bad: " + DD4 + " > " + DD4, !dd4.isGreaterThan( dd4 ) ); assertTrue( "Bad: " + DD4 + " > " + DD5, !dd4.isGreaterThan( dd5 ) ); assertTrue( "Bad: " + DD5 + " < " + DD1, dd5.isGreaterThan( dd1 ) ); assertTrue( "Bad: " + DD5 + " < " + DD2, dd5.isGreaterThan( dd2 ) ); assertTrue( "Bad: " + DD5 + " < " + DD3, dd5.isGreaterThan( dd3 ) ); assertTrue( "Bad: " + DD5 + " < " + DD4, dd5.isGreaterThan( dd4 ) ); assertTrue( "Bad: " + DD5 + " > " + DD5, !dd5.isGreaterThan( dd5 ) ); } | 2044 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2044/e622ff134f94da7c133006a05d0aab68115a1013/DeweyDecimalTestCase.java/clean/scm/loom/support/extension/src/test/org/realityforge/extension/DeweyDecimalTestCase.java | [
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taskList.removeFromRoot(task); } | taskList.removeFromRoot(task); } | public void moveToCategory(TaskCategory category, ITask task) { if(category.equals(taskList.getRootCategory())) { moveToRoot(task); } else { taskList.removeFromRoot(task); } if (task.getCategory() instanceof TaskCategory) { ((TaskCategory) task.getCategory()).removeTask(task); } if (!category.getChildren().contains(task)) { category.addTask(task); } task.setCategory(category); for (ITaskChangeListener listener : changeListeners) listener.taskListModified(); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/abde6eefcd5d77de457210fc6e4627c7285a37f2/TaskListManager.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/provisional/tasklist/TaskListManager.java | [
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System.out.println(" tag " + i + ":"); | System.out.println (" " + Messages.getString("StandaloneAppletViewer.Tag") + " " + i + ":"); | void printTags() { if (verbose) { System.out.println("parsed applet tags:"); for (int i = 0; i < appletTags.size(); i++) { AppletTag tag = (AppletTag) appletTags.get(i); System.out.println(" tag " + i + ":"); System.out.println(tag); } } } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/4c8433cfced7bf4547e39d39cd3393319aad49f0/StandaloneAppletViewer.java/clean/core/src/classpath/tools/gnu/classpath/tools/appletviewer/StandaloneAppletViewer.java | [
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String causingSourceFile = determineSourceFile(prevLine); | String causingSourceFile = determineSourceFile(); System.out.println("cause: " + causingSourceFile); | protected boolean parseErrors(IResource resource, String output) { TexlipseProperties.setSessionProperty(resource.getProject(), TexlipseProperties.SESSION_LATEX_RERUN, null); TexlipseProperties.setSessionProperty(resource.getProject(), TexlipseProperties.SESSION_BIBTEX_RERUN, null); IProject project = resource.getProject(); IContainer sourceDir = TexlipseProperties.getProjectSourceDir(project); if (sourceDir == null) { sourceDir = project; } boolean errorsFound = false; String prevLine = ""; StringTokenizer st = new StringTokenizer(output, "\r\n"); while (st.hasMoreTokens()) { String line = st.nextToken(); if (line.startsWith("! Undefined control sequence.")) { String part1 = st.nextToken(); String part2 = st.nextToken(); int index = part1.indexOf(' '); int comIndex = part1.indexOf('\\'); if (comIndex == -1) comIndex = index; // just in case... String lineNumberString = part1.substring(2, index); Integer lineNumber = null; try { int num = Integer.parseInt(lineNumberString); lineNumber = new Integer(num); } catch (NumberFormatException e) { } String error = "Undefined control sequence: " + part1.substring(comIndex).trim() + " (followed by: " + part2.trim() + ")"; errorsFound = true; String causingSourceFile = determineSourceFile(prevLine); //System.out.println("cause: " + causingSourceFile); IResource extResource = null; if (causingSourceFile != null) { extResource = sourceDir.findMember(causingSourceFile); } if (extResource != null) { createMarker(extResource, lineNumber, error); } else { createMarker(resource, lineNumber, error); } } else if (line.startsWith("! LaTeX Error:")) { String error = line.substring(15); String part2 = st.nextToken().trim(); if (Character.isLowerCase(part2.charAt(0))) { error += ' ' + part2; } // find additional information related to the error Integer lineNumber = null; if (part2.startsWith("See the LaTeX manual")) { String help2 = st.nextToken(); if (help2.startsWith("Type ")) { String dots = st.nextToken().trim(); if (dots.startsWith("..")) { String lineNumStr = st.nextToken().trim(); if (lineNumStr.length() == 0) { lineNumStr = st.nextToken().trim(); } if (lineNumStr.startsWith("l.")) { int lineNum = -1; try { lineNum = Integer.parseInt(lineNumStr.substring(2, lineNumStr.indexOf(' ', 2))); } catch (NumberFormatException e) { } if (lineNum != -1) { lineNumber = new Integer(lineNum); } } } } } errorsFound = true; String causingSourceFile = determineSourceFile(prevLine); IResource extResource = null; if (causingSourceFile != null) { extResource = sourceDir.findMember(causingSourceFile); } if (extResource != null) { createMarker(extResource, lineNumber, error); } else { createMarker(resource, lineNumber, error); } } else if (line.startsWith("LaTeX Warning: ")) { if (line.indexOf("Label(s) may have changed.") > 0) { // prepare to re-run latex TexlipseProperties.setSessionProperty(resource.getProject(), TexlipseProperties.SESSION_LATEX_RERUN, "true"); } else if (line.indexOf("There were undefined references.") > 0) { // prepare to run bibtex TexlipseProperties.setSessionProperty(resource.getProject(), TexlipseProperties.SESSION_BIBTEX_RERUN, "true"); } } else if (line.indexOf("(") != -1) { prevLine = line; } } return errorsFound; } | 9028 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9028/5aaf006a3de9feb0c27af0568fc555c191f49683/LatexRunner.java/clean/source/net/sourceforge/texlipse/builder/LatexRunner.java | [
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in.seek(in.getFilePointer() + size); | in.skipBytes(size); | protected void initFile(String id) throws FormatException, IOException { super.initFile(id); in = new RandomAccessFile(id, "r"); offsets = new Vector(); byte[] list = new byte[4]; String listString; type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); if (type.equals("RIFF")) { bigChunkSize = size; if (!fcc.equals("AVI ")) { whine("Sorry, AVI RIFF format not found."); } } else { whine("Not an AVI file"); } while (in.read(list) == 4) { in.seek(in.getFilePointer() - 4); listString = new String(list); if (listString.equals("JUNK")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("JUNK")) { in.seek(in.getFilePointer() + size); } } else if (listString.equals("LIST")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); in.seek(in.getFilePointer() - 12); if (fcc.equals("hdrl")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); if (type.equals("LIST")) { if (fcc.equals("hdrl")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("avih")) { pos = in.getFilePointer(); dwMicroSecPerFrame = DataTools.read4SignedBytes(in, little); dwMaxBytesPerSec = DataTools.read4SignedBytes(in, little); dwReserved1 = DataTools.read4SignedBytes(in, little); dwFlags = DataTools.read4SignedBytes(in, little); dwTotalFrames = DataTools.read4SignedBytes(in, little); dwInitialFrames = DataTools.read4SignedBytes(in, little); dwStreams = DataTools.read4SignedBytes(in, little); dwSuggestedBufferSize = DataTools.read4SignedBytes(in, little); dwWidth = DataTools.read4SignedBytes(in, little); dwHeight = DataTools.read4SignedBytes(in, little); dwScale = DataTools.read4SignedBytes(in, little); dwRate = DataTools.read4SignedBytes(in, little); dwStart = DataTools.read4SignedBytes(in, little); dwLength = DataTools.read4SignedBytes(in, little); metadata.put("Microseconds per frame", new Integer(dwMicroSecPerFrame)); metadata.put("Max. bytes per second", new Integer(dwMaxBytesPerSec)); metadata.put("Total frames", new Integer(dwTotalFrames)); metadata.put("Initial frames", new Integer(dwInitialFrames)); metadata.put("Frame width", new Integer(dwWidth)); metadata.put("Frame height", new Integer(dwHeight)); metadata.put("Scale factor", new Integer(dwScale)); metadata.put("Frame rate", new Integer(dwRate)); metadata.put("Start time", new Integer(dwStart)); metadata.put("Length", new Integer(dwLength)); in.seek(pos + size); } } } } else if (fcc.equals("strl")) { long startPos = in.getFilePointer(); long streamSize = size; type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); if (type.equals("LIST")) { if (fcc.equals("strl")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("strh")) { pos = in.getFilePointer(); String fccStreamTypeOld = fccStreamType; fccStreamType = readStringBytes(); if (!fccStreamType.equals("vids")) { fccStreamType = fccStreamTypeOld; } fccStreamHandler = readStringBytes(); dwStreamFlags = DataTools.read4SignedBytes(in, little); dwStreamReserved1 = DataTools.read4SignedBytes(in, little); dwStreamInitialFrames = DataTools.read4SignedBytes(in, little); dwStreamScale = DataTools.read4SignedBytes(in, little); dwStreamRate = DataTools.read4SignedBytes(in, little); dwStreamStart = DataTools.read4SignedBytes(in, little); dwStreamLength = DataTools.read4SignedBytes(in, little); dwStreamSuggestedBufferSize = DataTools.read4SignedBytes(in, little); dwStreamQuality = DataTools.read4SignedBytes(in, little); dwStreamSampleSize = DataTools.read4SignedBytes(in, little); metadata.put("Stream quality", new Integer(dwStreamQuality)); metadata.put("Stream sample size", new Integer(dwStreamSampleSize)); in.seek(pos + size); } type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("strf")) { pos = in.getFilePointer(); bmpSize = DataTools.read4SignedBytes(in, little); bmpWidth = DataTools.read4SignedBytes(in, little); bmpHeight = DataTools.read4SignedBytes(in, little); bmpPlanes = DataTools.read2SignedBytes(in, little); bmpBitsPerPixel = DataTools.read2SignedBytes(in, little); bmpCompression = DataTools.read4SignedBytes(in, little); bmpSizeOfBitmap = DataTools.read4SignedBytes(in, little); bmpHorzResolution = DataTools.read4SignedBytes(in, little); bmpVertResolution = DataTools.read4SignedBytes(in, little); bmpColorsUsed = DataTools.read4SignedBytes(in, little); bmpColorsImportant = DataTools.read4SignedBytes(in, little); bmpTopDown = (bmpHeight < 0); bmpNoOfPixels = bmpWidth * bmpHeight; metadata.put("Bitmap compression value", new Integer(bmpCompression)); metadata.put("Horizontal resolution", new Integer(bmpHorzResolution)); metadata.put("Vertical resolution", new Integer(bmpVertResolution)); metadata.put("Number of colors used", new Integer(bmpColorsUsed)); metadata.put("Bits per pixel", new Integer(bmpBitsPerPixel)); // scan line is padded with zeros to be a multiple of 4 bytes int npad = bmpWidth % 4; if (npad > 0) npad = 4 - npad; bmpScanLineSize = (bmpWidth + npad) * (bmpBitsPerPixel / 8); if (bmpSizeOfBitmap != 0) { bmpActualSize = bmpSizeOfBitmap; } else { // a value of 0 doesn't mean 0 -- it means we have // to calculate it bmpActualSize = bmpScanLineSize * bmpHeight; } if (bmpColorsUsed != 0) { bmpActualColorsUsed = bmpColorsUsed; } else { // a value of 0 means we determine this based on the // bits per pixel if (bmpBitsPerPixel < 16) { bmpActualColorsUsed = 1 << bmpBitsPerPixel; } else { // no palette bmpActualColorsUsed = 0; } } if (bmpCompression != 0) { whine("Sorry, compressed AVI files not supported."); } if (!(bmpBitsPerPixel == 8 || bmpBitsPerPixel == 24 || bmpBitsPerPixel == 32)) { whine("Sorry, " + bmpBitsPerPixel + " bits per pixel not " + "supported"); } if (bmpActualColorsUsed != 0) { // read the palette long pos1 = in.getFilePointer(); pr = new byte[bmpColorsUsed]; pg = new byte[bmpColorsUsed]; pb = new byte[bmpColorsUsed]; for (int i=0; i<bmpColorsUsed; i++) { pb[i] = (byte) in.read(); pg[i] = (byte) in.read(); pr[i] = (byte) in.read(); in.read(); } } in.seek(pos + size); } } type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("strd")) { in.seek(in.getFilePointer() + size); } else { in.seek(in.getFilePointer() - 8); } type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("strn")) { in.seek(in.getFilePointer() + size); } else { in.seek(in.getFilePointer() - 8); } } in.seek(startPos + 8 + streamSize); } else if (fcc.equals("movi")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); if (type.equals("LIST")) { if (fcc.equals("movi")) { type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); fcc = readStringBytes(); if (!(type.equals("LIST") && fcc.equals("rec "))) { in.seek(in.getFilePointer() - 12); } type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); long startPos = in.getFilePointer(); while (type.substring(2).equals("db") || type.substring(2).equals("dc") || type.substring(2).equals("wb")) { pos = in.getFilePointer(); if (type.substring(2).equals("db") || type.substring(2).equals("dc")) { offsets.add(new Long(in.getFilePointer())); in.skipBytes(bmpHeight * bmpScanLineSize); } type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); if (type.equals("JUNK")) { in.seek(in.getFilePointer() + size); type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); } } in.seek(in.getFilePointer() - 8); } } } else { // skipping unknown block in.seek(in.getFilePointer() + 8 + size); } } else { // skipping unknown block type = readStringBytes(); size = DataTools.read4SignedBytes(in, little); in.seek(in.getFilePointer() + size); } } numImages = offsets.size(); initOMEMetadata(); } | 55303 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55303/91859a26506b8a1d312b398da2c3ecd94e02fa60/AVIReader.java/clean/loci/formats/AVIReader.java | [
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public RubyBignum op_rshift(IRubyObject iNum) { long shift = numericValue(iNum).getLongValue(); | public RubyBignum op_rshift(RubyNumeric other) { long shift = other.getLongValue(); | public RubyBignum op_rshift(IRubyObject iNum) { long shift = numericValue(iNum).getLongValue(); if (shift > Integer.MAX_VALUE || shift < Integer.MIN_VALUE) throw new RangeError(runtime, "bignum too big to convert into `int'"); return new RubyBignum(runtime, value.shiftRight((int) shift)); } | 45221 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45221/1c602493a83e2050f401fa6925ec7e9269b45e4e/RubyBignum.java/clean/src/org/jruby/RubyBignum.java | [
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return (ActionType)AttributeFactory.eINSTANCE.createFromString(AttributePackage.eINSTANCE.getActionType(), initialValue); | return (ActionType) AttributeFactory.eINSTANCE.createFromString(AttributePackage.eINSTANCE.getActionType(), initialValue); | public ActionType createActionTypeObjectFromString(EDataType eDataType, String initialValue) { return (ActionType)AttributeFactory.eINSTANCE.createFromString(AttributePackage.eINSTANCE.getActionType(), initialValue); } | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/e5c78f0e8317166d02fa384e14c3dd7aa1796f2c/AttributeFactoryImpl.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/attribute/impl/AttributeFactoryImpl.java | [
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assertTrue("The binding shouldn't be active", bindingManager .getActiveBindingsFor(commandId).length == 0); | assertTrue("The binding shouldn't be active", bindingManager.getActiveBindingsFor(binding .getParameterizedCommand()).length == 0); | public final void testSetLocale() throws NotDefinedException { // GENERAL SET-UP final Context context = contextManager.getContext("na"); context.define("name", "description", null); final Scheme scheme = bindingManager.getScheme("na"); scheme.define("name", "description", null); bindingManager.setActiveScheme(scheme); final Set activeContextIds = new HashSet(); activeContextIds.add("na"); contextManager.setActiveContextIds(activeContextIds); // SET TO NULL try { bindingManager.setLocale(null); fail("Cannot set the locale to null"); } catch (final NullPointerException e) { // Success } // SET TO SOMETHING final String commandId = "commandId"; final Binding binding = new TestBinding(commandId, "na", "na", "xx", null, Binding.SYSTEM); bindingManager.addBinding(binding); assertTrue("The binding shouldn't be active", bindingManager .getActiveBindingsFor(commandId).length == 0); bindingManager.setLocale("xx_XX"); final TriggerSequence[] activeBindings = bindingManager .getActiveBindingsFor(commandId); assertEquals("The binding should become active", 1, activeBindings.length); assertSame("The binding should be the same", TestBinding.TRIGGER_SEQUENCE, activeBindings[0]); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/e61bf96d546738a5dfebc5feb8c2bcbe110e4371/BindingManagerTest.java/buggy/tests/org.eclipse.ui.tests/Eclipse UI Tests/org/eclipse/ui/tests/keys/BindingManagerTest.java | [
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namespaceSupport.pushContext(); | namespaceSupport.startElement(); | public void startElement(String uri, String localname, String qName, Attributes attributes) throws SAXException { namespaceSupport.pushContext(); if (config.matchURI == null || config.matchURI.equals(uri)) { int colonIndex = qName.indexOf(':'); String prefix = (colonIndex == -1) ? "" : qName.substring(0, colonIndex); if (config.matchPrefix == null || config.matchPrefix.equals(prefix)) { // Match: replace prefix or URI or both String newURI = (config.replaceURI == null) ? uri : config.replaceURI; String newQName; if (config.replacePrefix == null) { newQName = qName; } else if (colonIndex == -1) { newQName = config.replacePrefix + ":" + qName; } else { newQName = config.replacePrefix + qName.substring(colonIndex); } checkNamespace(uri, newURI, prefix, (config.replacePrefix == null) ? prefix : config.replacePrefix, true); super.startElement(newURI, localname, newQName, attributes); } else { // No match super.startElement(uri, localname, qName, attributes); } } else { // No match super.startElement(uri, localname, qName, attributes); } } | 52783 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52783/4815b907b90527af06e12476cfece46be4870d75/QNameConverter.java/buggy/src/java/org/orbeon/oxf/processor/converter/QNameConverter.java | [
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