rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
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localFile.setText(filter.setExtension(file)); | localFile.setText(filter.setExtension(file)); | private void getPCFile() { String workingDir = System.getProperty("user.dir"); TN5250jFileChooser pcFileChooser = new TN5250jFileChooser(workingDir); // set the file filters for the file chooser filter = getFilterByDescription(); pcFileChooser.addChoosableFileFilter(filter); int ret = p... | 4212 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4212/aadd2bf647f858917240790dfcecc8f004d87fa5/XTFRFile.java/buggy/src/org/tn5250j/tools/XTFRFile.java | [
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String useTrustedStr = _context.router().getConfigSetting(PROP_USE_TRUSTED_LINKS); | String useTrustedStr = getContext().router().getConfigSetting(PROP_USE_TRUSTED_LINKS); | public void runJob() { // start up the network comm system _context.commSystem().startup(); _context.tunnelManager().startup(); _context.peerManager().startup(); Job bootDb = new BootNetworkDbJob(_context); boolean useTrusted = false; String useTruste... | 3808 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3808/e737e5c9507ed0d463dc9e45a8f63657f466b177/BootCommSystemJob.java/clean/router/java/src/net/i2p/router/startup/BootCommSystemJob.java | [
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char c = event.getActionCommand().charAt(0); if (Character.isISOControl(c)) return; JTextComponent t = getTextComponent(event); if (t != null && t.isEnabled() && t.isEditable()) t.replaceSelection(event.getActionCommand()); | JTextComponent target = getTextComponent(event); if ((target != null) && (event != null)) { if ((target.isEditable()) && (target.isEnabled())) { String content = event.getActionCommand(); int mod = event.getModifiers(); if ((content != null) && (content.length() > 0) && (mod & ActionEvent.ALT_MASK) == 0 && (mod & Acti... | public void actionPerformed(ActionEvent event) { // first we filter the following events: // - control characters // - key events with the ALT modifier (FIXME: filter that too!) char c = event.getActionCommand().charAt(0); if (Character.isISOControl(c)) return; ... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/ff4d557efcee4a2c3a25a9cac2252bc626fb10fe/DefaultEditorKit.java/clean/core/src/classpath/javax/javax/swing/text/DefaultEditorKit.java | [
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getVirtualMachineProxy().logThreads(); | virtualMachineProxy.logThreads(); | private E invokeMethodAndFork(final SuspendContextImpl context) throws InvocationException, ClassNotLoadedException, IncompatibleThreadStateException, ... | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/153769f68e9bcb7188e6e0289d821933d4d9a7df/DebugProcessImpl.java/clean/source/com/intellij/debugger/engine/DebugProcessImpl.java | [
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_name = type; | _type = type; | public void setType(String type) { _name = type; } | 17033 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17033/3eb19a6e20118fea47b992e0d40df8a2e6433f1a/ACSDocumentType.java/buggy/src/antidote/org/apache/tools/ant/gui/acs/ACSDocumentType.java | [
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shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); | shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); | public void setProperties(String prefix, Properties props) { super.setProperties(prefix, props); String realPrefix = PropUtils.getScopedPropertyPrefix(this); shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); if (shapeF... | 47208 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47208/edbeffa6fb72058fbd5312d50c86c88fa8d47f6b/ShapeLayer.java/buggy/src/openmap/com/bbn/openmap/layer/shape/ShapeLayer.java | [
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cdOffset = new ZipLong(written); | cdOffset = written; | public void finish() throws IOException { closeEntry(); cdOffset = new ZipLong(written); for (int i = 0; i < entries.size(); i++) { writeCentralFileHeader((ZipEntry) entries.elementAt(i)); } cdLength = new ZipLong(written - cdOffset.getValue()); writeCentralDirec... | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/a05d1f12196d34b23d4ab80c3598f6fb63410ac5/ZipOutputStream.java/buggy/src/main/org/apache/tools/zip/ZipOutputStream.java | [
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return TextProcessor.process(sb.toString(), TextProcessor.getDefaultDelimiters() + "]"); | return TextProcessor.process(sb.toString(), TextProcessor.getDefaultDelimiters() + "[]"); | private String calcText(int index, EditorHistoryItem item) { StringBuffer sb = new StringBuffer(); int mnemonic = index + 1; sb.append(mnemonic); if (mnemonic <= MAX_MNEMONIC_SIZE) { sb.insert(sb.length() - (mnemonic + "").length(), '&'); //$NON-NLS-1$ } sb.appen... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/123c862651acfce2aefe5c0405159c5b5b35ac9e/ReopenEditorMenu.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/ReopenEditorMenu.java | [
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ze.setSize(bitstreams[k].getSize()); | ze.setTime(lmTime); ze.setSize(auth ? bitstreams[k].getSize() : 0); | public void disseminate(Context context, DSpaceObject dso, PackageParameters params, OutputStream pkg) throws PackageValidationException, CrosswalkException, AuthorizeException, SQLException, IOException { if (dso.getType() == Constants.ITEM) { Item item... | 1868 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1868/748804adc26317566de95cc497aca1def22e5f87/AbstractMetsDissemination.java/buggy/dspace/src/org/dspace/content/packager/AbstractMetsDissemination.java | [
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final AboutInfo[] infoArray = getFeaturesInfo(); | final AboutInfo[] infoArray = getFeaturesWithImages(); | protected Control createDialogArea(Composite parent) { setHandCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_HAND)); setBusyCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_WAIT)); getShell().addDisposeListener(new DisposeListener() { public void widgetDisposed(DisposeEvent e) { if (getHandCursor() != null... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/5c11908886291f25042ef1f3737171d1d18c38c5/AboutDialog.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/AboutDialog.java | [
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msg.setDest( null ); | msg.setDest(null); | private synchronized void handleRequestMessage( Message msg ) { if ( next_seq_id_to_assign < 0 ) { // we cannot assign a valid sequence id log.error( "Error: TOTAL_OLD.handleRequestMessage() - cannot handle request... do not know what sequence id to assign" ); return; } // make the message a broadcast m... | 48949 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48949/13de68466e3cf7fde6ee0bde0cee09a33e837e89/TOTAL_OLD.java/buggy/src/org/jgroups/protocols/TOTAL_OLD.java | [
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if (eah != null) eah.displayEditorList(); | if (eah != null) { eah.displayEditorList(); } | public void run() { if (workbenchWindow == null) { // action has been disposed return; } IWorkbenchPage page = workbenchWindow.getActivePage(); if (page != null) { WorkbenchPage wbp = (WorkbenchPage) page; EditorAreaHelper eah = wbp.getEditorPr... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/fa4a8cff0e027f8d3c6b1fcb92b30f46767dd191/WorkbookEditorsAction.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/WorkbookEditorsAction.java | [
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public CSourceViewerConfiguration(CTextTools tools, CEditor editor) { super(CUIPlugin.getDefault().getCombinedPreferenceStore()); fTextTools= tools; fEditor= editor; | public CSourceViewerConfiguration(IColorManager colorManager, IPreferenceStore preferenceStore, ITextEditor editor, String partitioning) { super(preferenceStore); fColorManager= colorManager; fTextEditor= editor; fDocumentPartitioning= partitioning; initializeScanners(); | public CSourceViewerConfiguration(CTextTools tools, CEditor editor) { super(CUIPlugin.getDefault().getCombinedPreferenceStore()); fTextTools= tools; fEditor= editor; } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/0482b3954404fd528d629e737114a70d018a10db/CSourceViewerConfiguration.java/buggy/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/text/CSourceViewerConfiguration.java | [
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int nWeight = (int)getWeight(); if (nWeight <= WEIGHT_LIGHT) { return WEIGHT_LIGHT; } else if (nWeight <= WEIGHT_MEDIUM) { return WEIGHT_MEDIUM; } else if (nWeight <= WEIGHT_HEAVY) { return WEIGHT_HEAVY; } else { return WEIGHT_ASSAULT; } | return EntityWeightClass.getWeightClass((int)getWeight()); | public int getWeightClass() { int nWeight = (int)getWeight(); if (nWeight <= WEIGHT_LIGHT) { return WEIGHT_LIGHT; } else if (nWeight <= WEIGHT_MEDIUM) { return WEIGHT_MEDIUM; } else if (nWeight <= WEIGHT_HEAVY) { return WEIGHT_HEAVY; } else {... | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/067e0cc45c0757e4164da5a8a2e295c624f8339b/Entity.java/buggy/megamek/src/megamek/common/Entity.java | [
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"Mismatched lengths!", expectedCommand.length, actualCommand.length); | "Mismatched lengths!", expectedCommand.length, actualCommand.length); | public void testHistoryCommandNullLocal() throws CruiseControlException { Date lastBuildTime = new Date(); CVS element = new CVS(); element.setCvsRoot("cvsroot"); element.setLocalWorkingCopy(null); String[] expectedCommand = new String[] { "cvs", ... | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/cc8d12515d217c4869991501dda487dca6f6add8/CVSTest.java/clean/main/test/net/sourceforge/cruisecontrol/sourcecontrols/CVSTest.java | [
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DateTime dt1 = new DateTime(2005, 7, 17, 1, 1, 1, 1); | DateTime dt1 = null; | public void testConstructor_RI_RI4() throws Throwable { DateTime dt1 = new DateTime(2005, 7, 17, 1, 1, 1, 1); DateTime dt2 = null; // 2002-06-09T01:00+01:00 MillisDuration test = new MillisDuration(dt1, dt2); assertEquals(PeriodType.getPreciseAllType(), test.getPeriodType()); ass... | 52681 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52681/3f62b3a3ef59f954a14f09aeee97053618da1c74/TestDuration_Constructors.java/clean/JodaTime/src/test/org/joda/time/TestDuration_Constructors.java | [
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if(ASS)ER.T(null!=_controlTyrant,"emperor init order problem", this); | if(AS.S)ER.T(null!=_controlTyrant,"emperor init order problem", this); | public BreakpointTyrant(Emperor emperor) { super(); _emperor = emperor; _controlTyrant = emperor.getControlTyrant(); if(ASS)ER.T(null!=_controlTyrant,"emperor init order problem", this); PrivilegeManager.enablePrivilege("Debugger"); _dc = _emperor.getDebugController(); ... | 51996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51996/2de73cf99dce60cce549e7757f841284b68d1220/BreakpointTyrant.java/buggy/js/jsdj/classes/com/netscape/jsdebugging/ifcui/BreakpointTyrant.java | [
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else if (type == Long.TYPE) { | else if (valtype == Long.TYPE) { | public void set(Object obj, Object value) throws IllegalArgumentException, IllegalAccessException { if (type == Boolean.TYPE) { setBoolean0(obj, ((Boolean)value).booleanValue()); } else if (type == Byte.TYPE) { setByte0(obj, ((Byte)value).byteValue()); } else if (type == Short.TYPE) { setShort0(obj, ((Short)value).s... | 45713 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45713/7b84a6330dc1427a0f11753f53c35dd58b462168/Field.java/clean/libraries/javalib/java/lang/reflect/Field.java | [
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final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); | if (manifest != null) { final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); } | private static String getClassPath(final File jarFile) { String result = null; if (jarFile.isFile()) { try { final JarFile jar = new JarFile(jarFile); final Manifest manifest = jar.getManifest(); final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); } c... | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/56e0c512ba7875bc9165142ff5affd317fb8a06b/Project.java/clean/findbugs/src/java/edu/umd/cs/findbugs/Project.java | [
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mojo.setArtifactItems(list); | mojo.setArtifactItems( list ); | public void testMissingVersionFromDependencyMgt() throws MojoExecutionException { ArtifactItem item = new ArtifactItem(); item.setArtifactId( "artifactId" ); item.setClassifier( "" ); item.setGroupId( "groupId" ); item.setType( "type" ); MavenProject project = moj... | 51807 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51807/1f209e4fef3efb2350634ef8c679a5acd5c29ec3/TestCopyMojo.java/clean/maven-dependency-plugin/src/test/java/org/apache/maven/plugin/dependency/fromConfiguration/TestCopyMojo.java | [
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addTest(new TreeTest("testAddHundred", BasicPerformanceTest.GLOBAL)); addTest(new TreeTest("testAddThousandPreSort", BasicPerformanceTest.LOCAL)); | addTest(new TreeTest("testAddHundred", BasicPerformanceTest.LOCAL)); addTest(new TreeTest("testAddThousandPreSort", BasicPerformanceTest.GLOBAL)); | public JFacePerformanceSuite() { super(); addTest(new ListViewerRefreshTest("testRefresh")); addTest(new ComboViewerRefreshTest("testRefresh",BasicPerformanceTest.LOCAL)); addTest(new TableViewerRefreshTest("testRefresh")); addTest(new TableViewerRefreshTest("testUpdate")); addTest(new TreeTest("testAddTen")); ... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/9e747ced58e16f96a84930b6104b53f056089cf0/JFacePerformanceSuite.java/buggy/tests/org.eclipse.ui.tests/Eclipse JFace Tests/org/eclipse/jface/tests/performance/JFacePerformanceSuite.java | [
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return runtime.getFalse(); | return getRuntime().getFalse(); | public IRubyObject equal(IRubyObject other) { if (this == other) { return runtime.getTrue(); } else if (!(other instanceof RubyHash)) { return runtime.getFalse(); } else if (length() != ((RubyHash)other).length()) { return runtime.getFalse(); } for... | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyHash.java/buggy/src/org/jruby/RubyHash.java | [
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setNull(parameterIndex, Types.OTHER); | setNull(parameterIndex, Types.VARBINARY); | public void setBytes(int parameterIndex, byte x[]) throws SQLException { if (connection.haveMinimumCompatibleVersion("7.2")) { //Version 7.2 supports the bytea datatype for byte arrays if (null == x) { setNull(parameterIndex, Types.OTHER); } else { setString(parameterIndex, PGbytea.toPGString(x), P... | 46409 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46409/cfae07331ccad4f28ea00dc7e8f1ba01ec979ec5/AbstractJdbc1Statement.java/clean/src/interfaces/jdbc/org/postgresql/jdbc1/AbstractJdbc1Statement.java | [
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public org.quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { org.quickfix.field.AccruedInterestAmt value = new org.quickfix.field.AccruedInterestAmt(); | public quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { quickfix.field.AccruedInterestAmt value = new quickfix.field.AccruedInterestAmt(); | public org.quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { org.quickfix.field.AccruedInterestAmt value = new org.quickfix.field.AccruedInterestAmt(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/TradeCaptureReport.java/buggy/src/java/src/quickfix/fix44/TradeCaptureReport.java | [
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public org.quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { org.quickfix.field.ContractMultiplier value = new org.quickfix.field.ContractMultiplier(); | public quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { quickfix.field.ContractMultiplier value = new quickfix.field.ContractMultiplier(); | public org.quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { org.quickfix.field.ContractMultiplier value = new org.quickfix.field.ContractMultiplier(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/RequestForPositions.java/buggy/src/java/src/quickfix/fix44/RequestForPositions.java | [
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if (u==0) { if (v>=0) return 90; else return -90; } else if (u>0) { return Math.atan(v/u)*180/Math.PI; } else if (v>=0) { return 180 + Math.atan(v/u)*180/Math.PI; } else { return Math.atan(v/u)*180/Math.PI-180; | if (u==0) { if (v>=0) return 90; else return -90; } if (u>0) return Math.atan(v/u)*180/Math.PI; if (v>=0) return 180 + Math.atan(v/u)*180/Math.PI; return Math.atan(v/u)*180/Math.PI-180; | private double atan2(double v, double u) { if (u==0) { if (v>=0) return 90; else return -90; } else if (u>0) { return Math.atan(v/u)*180/Math.PI; } else if (v>=0) { return 180 + Math.atan(v/u)*180/Math.PI; } else { return Math.atan(v/u)*180/Math.PI-180; } } | 7659 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7659/23e8c9696fabf00623b3f7cb5a915d458eabb308/Leaf.java/clean/arbaro/tree/Leaf.java | [
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setProperty((String) evalAttr("property", getProperty(), | setProperty((String) evalAttr("property", getPropertyExpr(), | private void evaluateExpressions() throws JspException { try { setAccesskey((String) evalAttr("accessKey", getAccesskey(), String.class)); } catch (NullAttributeException ex) { setAccesskey(null); } try { setAlt((... | 8610 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8610/2dbb705eab3659c5c2ceb6398f2eec56e1f6994d/ELMultiboxTag.java/buggy/struts-el/src/share/org/apache/strutsel/taglib/html/ELMultiboxTag.java | [
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data.widthHint = convertWidthInCharsToPixels(ABOUT_TEXT_WIDTH); data.heightHint = convertHeightInCharsToPixels(ABOUT_TEXT_HEIGHT); | protected Control createDialogArea(Composite parent) { setHandCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_HAND)); setBusyCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_WAIT)); getShell().addDisposeListener(new DisposeListener() { public void widgetDisposed(DisposeEvent e) { if (getHandCursor() != null) g... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/7a4cd13b7c8a4f25f12bce9d5af219c2c3ed1660/AboutDialog.java/clean/bundles/org.eclipse.ui/Eclipse UI/org/eclipse/ui/internal/dialogs/AboutDialog.java | [
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return (getUuid() + getName() + getIndex()).compareTo(right.getUuid() + right.getName() + right.getIndex()); | return (getChildrenIndex() + getUuid() + getName() + getSameNameIndex()).compareTo(right.getChildrenIndex() + right.getUuid() + right.getName() + right.getSameNameIndex()); | public int compareTo(Object obj) { if (equals(obj)) { return 0; } ORMChildNodeEntry right = (ORMChildNodeEntry) obj; return (getUuid() + getName() + getIndex()).compareTo(right.getUuid() + right.getName() + right.getIndex()); } | 49304 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49304/ce0917f3bbf7b653a22e99486aa09e43ae268056/ORMChildNodeEntry.java/buggy/contrib/orm-persistence/src/java/org/apache/jackrabbit/core/state/orm/ORMChildNodeEntry.java | [
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eltQName.uri, | eltQName.uri, | int traverseChoice (Element choiceDecl) throws Exception { // REVISIT: traverseChoice, traverseSequence can be combined Element child = checkContent(choiceDecl, XUtil.getFirstChildElement(choiceDecl), true); int contentSpecType = 0; int csnType = 0; csnType = XMLConten... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/87731f2b2070ba79da173a5e6be82410b096d7c5/TraverseSchema.java/buggy/src/org/apache/xerces/validators/schema/TraverseSchema.java | [
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x = r.x; y = r.y; width = r.width; height = r.height; | setBounds (r.x, r.y, r.width, r.height); | public void setBounds(Rectangle r) { x = r.x; y = r.y; width = r.width; height = r.height; } | 13625 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13625/3fe1c14284ce32b79d0e66441aec6a45a77ff684/Rectangle.java/buggy/libjava/java/awt/Rectangle.java | [
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IProjectAdapter projectAdapter = (IProjectAdapter) project .getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter .getPBDotProjectOwner(resource); | IProjectAdapter projectAdapter = (IProjectAdapter) project.getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter.getPBDotProjectOwner(resource); | private IPBDotProjectOwner getIPBDotProjectOwner(IResource resource) { IProject project = resource.getProject(); IProjectAdapter projectAdapter = (IProjectAdapter) project .getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter .getPBDotProjectOwner(resource); return pbDotPr... | 2575 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2575/5644f6506a8f17f2b8311774090206457f13a78d/PBDotProjectBuilder.java/clean/wolips/plugins/org.objectstyle.wolips.builder/java/org/objectstyle/wolips/builder/internal/PBDotProjectBuilder.java | [
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String key = sb.toString().trim(); int value = in.readInt(); if (!key.trim().equals("") && key.trim().length() > 3 && key.trim().indexOf("?") == -1) { metadata.put(key, new Integer(value)); } } | metadata.put("Extra data", sb.toString().trim()); | protected void initStandardMetadata() throws FormatException { super.initStandardMetadata(); try { // Now that the base TIFF standard metadata has been parsed, we need to // parse out the STK metadata from the UIC4TAG. TiffIFDEntry uic4tagEntry = TiffTools.getFirstIFDEntry(in, UIC4TAG); in.s... | 55415 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55415/a9bd8c249dbfebba58914b297ee02f183985253a/MetamorphReader.java/clean/loci/formats/in/MetamorphReader.java | [
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while (! alreadyRead(newMessages[lastRead], f)) { | while (lastRead >=0 && ! alreadyRead(newMessages[lastRead], f)) { | public Message[] getNewMessages(Folder f) throws MessagingException { if (Pooka.isDebug()) System.out.println("getting new messages."); Message[] newMessages = f.getMessages(); if (newMessages.length > 0) { int lastRead = newMessages.length - 1; while (! alreadyRead(newMessages[lastRead], f)) ... | 967 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/967/d10a3fdd9905852f1c352d50c83635d4005e83f1/PopInboxFolderInfo.java/clean/net/suberic/pooka/PopInboxFolderInfo.java | [
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config = null; config = new MuleConfiguration(); instance = null; | public synchronized void dispose() { if (disposed.get()) { return; } try { if (started.get()) { stop(); } } catch (UMOException e) { logger.error("Failed to stop manager: " + e.getMessage(), e); } disposed.set(tr... | 28323 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28323/52017c1e601c5799605acbc0ccb383996a153288/MuleManager.java/clean/mule/src/java/org/mule/MuleManager.java | [
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m_statusTable = new HashMap(); | public void init() { } | 11849 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11849/ee925e8a9e5362a082e45c6bfbc995a731465000/PassiveStatusKeeper.java/clean/src/services/org/opennms/netmgt/passive/PassiveStatusKeeper.java | [
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throw new RuntimeException(t); } | throw new RuntimeException(t); } | public void run() { throw new RuntimeException(t); } | 12633 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12633/f81cc1b11b3a883dbd75a30387d76b77b5babfa6/ExceptionDisplayDialog.java/buggy/dupratcated/src/fr/umlv/symphonie/util/ExceptionDisplayDialog.java | [
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StringBuffer errorMessage = null; | qe.connection = (AbstractJdbc1Connection)((AbstractJdbc1Statement)statement).getPGConnection(); qe.pg_stream = qe.connection.getPGStream(); | public java.sql.ResultSet execute() throws SQLException { StringBuffer errorMessage = null; if (pg_stream == null) { throw new PSQLException("postgresql.con.closed"); } synchronized (pg_stream) { sendQuery(); int c; boolean l_endQuery = false; while (!l_endQuery) { c = pg_stream.ReceiveChar(); ... | 52522 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52522/16a30346c86590fbdcd83cacd2a0a9dbd2cd00dc/QueryExecutor.java/clean/src/interfaces/jdbc/org/postgresql/core/QueryExecutor.java | [
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RubyArray array = RubyArray.newArray(runtime, args.length - expectedArgsCount); | RubyArray array = runtime.newArray(args.length - expectedArgsCount); | private void prepareArguments(Ruby runtime, IRubyObject receiver, IRubyObject[] args) { if (args == null) { args = IRubyObject.NULL_ARRAY; } int expectedArgsCount = argsNode.getArgsCount(); if (expectedArgsCount > args.length) { throw new ArgumentError(runtime, "Wro... | 46258 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46258/870e1da9b41bfdbae259e1fc5f18fc8b76686998/DefaultMethod.java/buggy/src/org/jruby/internal/runtime/methods/DefaultMethod.java | [
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int status = rs.status; | int status = rs.getStatus(); | public void run() { long uid = req.getLong(DMT.UID); short htl = req.getShort(DMT.HTL); NodePeer source = (NodePeer) req.getSource(); htl = source.decrementHTL(htl); // FIXME should be more generic when implement SSKs NodeCHK key = (NodeCHK) req.getObject(DMT.FREENET_ROUTIN... | 50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/d6f2b27b0068d0738bbd2f1afae8c1cc0bef24f4/RequestHandler.java/buggy/src/freenet/node/RequestHandler.java | [
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printError("Cannot get initial context for JNDI: " + e+"<br>"); return ; | printError("Cannot get initial context for JNDI: " + e + "<br>"); return; | public void doPost(HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { Integer toId; // to user id Integer fromId; // from user id Integer itemId; // item id String comment; // user comment Integer rating; // user rating sp = new ServletPrinter(re... | 5750 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5750/3d57ae5a342bc10d6c418636c07193a0289ffd6b/StoreComment.java/clean/EJB_EntityBean_id_BMP/edu/rice/rubis/beans/servlets/StoreComment.java | [
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in.skipBytes(4); | in.readInt(); | protected void initFile(String id) throws FormatException, IOException { super.initFile(id); in = new RandomAccessStream(id); byte[] fourBytes = new byte[4]; in.read(fourBytes); littleEndian = new String(fourBytes).equals("iiii"); // populate standard metadata hashtable and OME root node in.skipB... | 46826 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46826/2df09d33bfdc966378aae0cc09cb503afb983bc2/IPLabReader.java/buggy/loci/formats/in/IPLabReader.java | [
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} else if(cmd.equals("Paste")) { | } else if (cmd.equals("Paste")) { | public void actionPerformed(ActionEvent e) { String cmd = e.getActionCommand(); if(cmd.equals("Cut")) { consoleTextArea.cut(); } else if(cmd.equals("Copy")) { consoleTextArea.copy(); } else if(cmd.equals("Paste")) { consoleTextArea.paste(); } } | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/b9766e81693411fa600b26b9a0763dcf621b2770/Main.java/clean/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/Main.java | [
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if (task != null && !browse.isDisposed() && deactiveTask.getHandle().equals(task.getHandle())) { | if (task != null && !browse.isDisposed() && deactiveTask.getHandleIdentifier().equals(task.getHandleIdentifier())) { | public void taskDeactivated(ITask deactiveTask) { if (task != null && !browse.isDisposed() && deactiveTask.getHandle().equals(task.getHandle())) { browse.setEnabled(true); } } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/8bb2562e67033f820cbda60f5cf69d21ebe18834/TaskSummaryEditor.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/ui/TaskSummaryEditor.java | [
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if ( callback != null ) callback.removeConnection( c ); | if ( callback != null ) callback.removeConnection( c ); | public void failedToConnect(Connection c) { // Remove this connection if ( callback != null ) callback.removeConnection( c ); // Maintain a count of attempted outgoing connections activeAttempts--; } | 5134 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5134/41422245404c0fad8a30437d75fc29381b02be42/ConnectionManager.java/clean/components/gnutella-core/src/main/java/com/limegroup/gnutella/ConnectionManager.java | [
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if (aAST.getType() == TokenTypes.CLASS_DEF) { | if (aAST.getType() == TokenTypes.CLASS_DEF || aAST.getType() == TokenTypes.ENUM_DEF) { | public final void leaveToken(DetailAST aAST) { if (aAST.getType() == TokenTypes.CLASS_DEF) { // perhaps it was inner class int dotIdx = mCurrentClass.lastIndexOf("$"); if (dotIdx == -1) { // perhaps just a class dotIdx = mCurrentClass.lastInde... | 31427 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31427/fcbd40f3ce04fe3011bf0e1b2642ac1fd049f5de/AbstractTypeAwareCheck.java/buggy/src/checkstyle/com/puppycrawl/tools/checkstyle/checks/AbstractTypeAwareCheck.java | [
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if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; | if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; | public RubyObject call(Ruby ruby, RubyObject recv, String id, RubyPointer args, boolean noSuper) { if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; // +++ = null; List valueList = null; ruby.getScope().push(); CRefNode lRefValue = getRefValue(); if (lRefValue != null) { saved... | 45298 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45298/7798138390a306a202dcec9bde45928dae2e852e/ScopeNode.java/buggy/org/jruby/nodes/ScopeNode.java | [
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IEditorPart editor = UIUtil.getActiveEditor( true ); if ( editor != null ) { return ( editor.getEditorInput( ).getName( ).endsWith( ".rptlibrary" ) ); } return false; | return ( selectLibrary( ) || editLibrary( ) ); | private boolean isEnable( ) { IEditorPart editor = UIUtil.getActiveEditor( true ); if ( editor != null ) { return ( editor.getEditorInput( ).getName( ).endsWith( ".rptlibrary" ) ); //$NON-NLS-1$ } return false; } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/fb6513c80373d4051a54d769ef954b2fdb7aebbd/PublishLibraryAction.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/actions/PublishLibraryAction.java | [
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return formattedString.charAt(charIndex); | return formattedString.charAt (charIndex); | public char setIndex(int position) { if (position < 0 || position > formattedString.length()) throw new IllegalArgumentException("position is out of range"); charIndex = position; if (attributes != null) { for (attributeIndex=0;attributeIndex<attributes.length; attributeIndex++) if (ran... | 25337 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25337/905252cb2827a39c9de9ec6f60a2dd0fb655254d/FormatCharacterIterator.java/clean/libjava/java/text/FormatCharacterIterator.java | [
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triggereditor = new TriggerEditorComposite(cmpContent, SWT.NONE, triggers); GridData gdTriggerEditor = new GridData(GridData.FILL_HORIZONTAL); triggereditor.setLayoutData(gdTriggerEditor); | triggereditor = new TriggerEditorComposite( cmpContent, SWT.NONE, triggers, wizardContext, bEnableURLParameters, bEnableShowTooltipValue ); GridData gdTriggerEditor = new GridData( GridData.FILL_HORIZONTAL ); triggereditor.setLayoutData( gdTriggerEditor ); | private void placeComponents() { GridLayout glContent = new GridLayout(); glContent.marginHeight = 7; glContent.marginWidth = 7; glContent.verticalSpacing = 5; Composite cmpContent = new Composite(shell, SWT.NONE); cmpContent.setLayout(glContent); triggereditor = ... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/a769c95667dd11c0218d8ea7d48a98220acf6dd8/TriggerEditorDialog.java/clean/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/composites/TriggerEditorDialog.java | [
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public void testGetStereotypes() { Object cls = Model.getCoreFactory().buildClass(); Model.getCoreHelper().setNamespace(cls, Model.getModelManagementFactory().createPackage()); Collection coll1 = Model.getFacade().getStereotypes(cls); assertEquals(0, coll1.size()); ... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/340bff8632e5ecad8484aa211c71fdb3fb853238/TestModelFacade2.java/clean/tests/org/argouml/model/TestModelFacade2.java | [
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newname.append(suffix.name, suffix.labels); | newname.append(suffix.name, suffix.offset(0), suffix.labels); | concatenate(Name prefix, Name suffix) throws NameTooLongException { if (prefix.isAbsolute()) return (prefix); Name newname = new Name(); copy(prefix, newname); newname.append(suffix.name, suffix.labels); return newname;} | 4227 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4227/7e1e3e31d95a2c7c87eee6939a0d9e99b4864664/Name.java/clean/org/xbill/DNS/Name.java | [
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if (file.getName().equals(IProjectDescription.DESCRIPTION_FILE_NAME)) | if (file.getName().equals( IProjectDescription.DESCRIPTION_FILE_NAME)) | private void collectProjectFiles(Collection files, File directory) { File[] contents = directory.listFiles(); for (int i = 0; i < contents.length; i++) { File file = contents[i]; if (file.isDirectory()) collectProjectFiles(files, file); else { if (file.getName().equals(IProjectDescription.DESCRIPTION_FIL... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/320f342281f01d0eab3a23189cdf15882a2124b5/WizardProjectsImportPage.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/wizards/datatransfer/WizardProjectsImportPage.java | [
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response.setContentLength(length); | response.setContentLength(bytes.length); | public static void streamContentToBrowser(HttpServletResponse response, InputStream in, int length, String contentType) throws IOException { // tell the browser not the cache setResponseBrowserProxyNoCache(response); // set the response info response.setContentLength(length); if (... | 45953 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45953/137ab48677dd551defb2a479e3477daa90bea93e/UtilHttp.java/buggy/framework/base/src/base/org/ofbiz/base/util/UtilHttp.java | [
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if ((_uriType != Type.NodeSetDTM) && (_uriType != Type.String)) { | if ((_uriType != Type.NodeSet) && (_uriType != Type.String)) { | public Type typeCheck(SymbolTable stable) throws TypeCheckError { // At least one argument - two at most final int ac = argumentCount(); if ((ac < 1) || (ac > 2)) { ErrorMsg msg = new ErrorMsg("Illegal number of arguments "+ "to document() function"); throw new TypeCheckError(msg); } // Parse the first ... | 46591 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46591/f0eadbdddedfdd79ebf4f6c6de8e4fc82241e61f/DocumentCall.java/clean/src/org/apache/xalan/xsltc/compiler/DocumentCall.java | [
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String[] uses = exports[j].getUses(); | String[] uses = (String[]) exports[j].getExportPackageDescription().getDirective(Constants.USES_DIRECTIVE); | void addInitialGroupingConstraints(ResolverBundle[] bundles) { for (int i = 0; i < bundles.length; i++) { ResolverExport[] exports = bundles[i].getExportPackages(); for (int j = 0; j < exports.length; j++) { String[] uses = exports[j].getUses(); if (uses == null) continue; for (int k = 0; k < uses.le... | 2516 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2516/cba4c973afe037bfd2ac93a0c8877d76f9a85f0a/GroupingChecker.java/buggy/bundles/org.eclipse.osgi/resolver/src/org/eclipse/osgi/internal/module/GroupingChecker.java | [
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User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); User newUser2 = userDatabase.findUser(newUserName); assertTrue("Check username", newUserName.equals(newUser2.getUsername())); assertTrue("Check ... | User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); User newUser2 = userDatabase.findUser(newUserName); assertTrue("Check username", newUserName.equals(newUser2.getUsername())); assertTrue("Check ... | public void testCase08() throws Exception{ String newUserName = "newUser08"; int subs = 5; User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); // TO... | 2722 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2722/1c9701ef0df49c47648fb6bcf65f7575186571d3/BaseTestUserDatabase.java/buggy/mailreader-dao/src/test/java/org/apache/struts/apps/mailreader/dao/BaseTestUserDatabase.java | [
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} else if ( end < exonEnd ) { overlap = end - start; | } else if ( enda < endb ) { overlap = enda - starta; | private static int computeOverlap( int start, int end, int exonStart, int exonEnd ) { if ( exonStart > exonEnd ) throw new IllegalArgumentException( "Exon start must be before end" ); if ( start > end ) throw new IllegalArgumentException( "Start must be before end" ); log.debug( "Comparing quer... | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/f95984592ab6cae0a89b2e6264c7a318aad6a040/SequenceManipulation.java/buggy/gemma-core/src/main/java/ubic/gemma/analysis/sequence/SequenceManipulation.java | [
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setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); | setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); | public MarkTaskCompleteAction(TaskListView view) { this.view = view; setText("Mark Complete"); setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/1abdb20ca0cde925cfb80d10d584d2fd323bcfb0/MarkTaskCompleteAction.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/ui/actions/MarkTaskCompleteAction.java | [
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public void performDefaultAction(PipelineContext pipelineContext, XFormsEvent event) { final String eventName = event.getEventName(); if (XFormsEvents.XFORMS_SUBMIT.equals(eventName) || XFormsEvents.XXFORMS_SUBMIT.equals(eventName)) { // 11.1 The xforms-submit Event // Bubbles: Y... | 51410 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51410/a7d2dd5143b78ea5734dbca96f53819d679e98d7/XFormsModelSubmission.java/clean/src/java/org/orbeon/oxf/xforms/XFormsModelSubmission.java | [
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{ logger.info("Reading config file from " + configFile); System.out.println("readConfiguration:" + configFile); AtomTypeConfigurator atc = null; | { logger.info("Reading config file from " + configFile); AtomTypeConfigurator atc = null; | private void readConfiguration(String configFile) { logger.info("Reading config file from " + configFile); System.out.println("readConfiguration:" + configFile); AtomTypeConfigurator atc = null; InputStream ins = null; { /* * mth 2003 05 05 * Egon, I'm leaving these comments in here s... | 45167 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45167/ce72e272e817113dbe1977ae4e03ff8d50b3763a/AtomTypeFactory.java/buggy/src/org/openscience/cdk/tools/AtomTypeFactory.java | [
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return new Float(1000); | return new Float(10000000); | protected Float getMaximumInternal() { return new Float(1000); } | 10874 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10874/d333542e47655e57de9288e2cc6e9f20ebf01bb6/NcAlgorithm.java/buggy/uk/ac/sanger/artemis/plot/NcAlgorithm.java | [
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rc = (RequestCompanion)_requests.remove( args.argv(1) ) ; | rc = (RequestCompanion)_requests.get( args.argv(1) ) ; | private synchronized void processServerReply( Args args ){ if( args.argc() < 2 ){ if(_debug)System.err.println( "Zero answer from server" ) ; return ; } RequestCompanion rc = null ; if( args.argv(0).equals( "ok" ) ){ rc = (RequestCompanion)_requests.remove( args.a... | 3665 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3665/2fc49aea7c7c02676c48d15c769c436b4a9b1814/EuroSyncClient.java/buggy/gate/EuroSyncClient.java | [
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execute(next, nextContent); | executeHeader(next, nextContent); | public boolean hasNextChild( ) { if(!needUpdate) { return hasNext; } if(currentRunIn!=null) { if(currentRunIn.hasNextChild( )) { hasNext = true; needUpdate = false; return hasNext; } else { currentRunIn.close( ); } } currentRunIn = null; while(executor.hasNextChil... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/b859db429494e9aee3f7db11c712b8daba034365/ListContainerExecutor.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/layout/content/ListContainerExecutor.java | [
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"<LocalElt>2</LocalElt></foo:LocalStrict>"); | "<NoNSElt>2</NoNSElt></foo:LocalStrict>"); | public void testLocalStrictLegal() throws Throwable { LocalStrictDocument doc = LocalStrictDocument.Factory .parse("<foo:LocalStrict " + " xmlns:foo=\"http://xbean/scomp/namespace/ElementWC\">" + "<LocalElt>2</LocalElt></foo:LocalStrict>"); if (!doc.validat... | 3520 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3520/6fb2092dc42215a3e86cd61e15efb4d667b2282e/ElementWC.java/buggy/v2/test/src/scomp/namespace/detailed/ElementWC.java | [
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{ List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (PropertyDefn) iter.next( ); write( makeMemberReference( null, prop.defined... | { List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (PropertyDefn) iter.next( ); write( makeMemberReference( null, prop.defined... | private void writeStyleProperties( DocElement element ) { List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (Prope... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/2012a7e6d8d91844c6c396ee5b7b69a4345dea99/Generator.java/buggy/model/org.eclipse.birt.report.model/romdoc/src/org/eclipse/birt/doc/romdoc/Generator.java | [
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protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { Dire... | 54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java | [
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} else if (type.equals("selectFromChemObject")) { | } else if (type.equals("selectMolecule")) { ChemObject object = getSource(event); if (object instanceof Atom) { renderModel.setSelectedPart(ChemModelManipulator.getRelevantAtomContainer(jcpModel.getChemModel(),(Atom)object)); } else if (object instanceof Bond) { renderModel.setSelectedPart(ChemModelManipulator.getRelev... | public void actionPerformed(ActionEvent event) { // learn some stuff about event logger.debug("Event source: ", event.getSource().getClass().getName()); logger.debug(" ChemObject: ", getSource(event)); JChemPaintModel jcpModel = jcpPanel.getJChemPaintModel(); Renderer2DModel renderModel = jcpModel.getRendererMod... | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/4aa85b612d05d155adadf78e20d6034079c18106/EditAction.java/buggy/src/org/openscience/cdk/applications/jchempaint/action/EditAction.java | [
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assertEquals(new String(((Message)tempEvt.getArg()).getBuffer()),"hello2"); | assertEquals("hello2", new String(((Message)tempEvt.getArg()).getBuffer())); | public void testViewChangeNewKeyServer() throws Exception{ // create peer and server ENCRYPT peer = new ENCRYPT(); try { peer.init(); } catch (Exception e){ fail(e.getMessage()); } ENCRYPT server = new ENCRYPT(); try { server.init(); } catch (Exception e){ fail(e.getMessage()); } // set up server... | 47927 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47927/6cf135ab0aec1dba727f94146eb1d03ec797779c/ENCRYPTAsymmetricTest.java/clean/tests/junit/org/jgroups/protocols/ENCRYPTAsymmetricTest.java | [
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fElementQNamePartsStack[fElementDepth].setValues(fCurrentElement); | fElementEntityStack[fElementDepth] = fCurrentElementEntity; fElementIndexStack[fElementDepth] = fCurrentElementIndex; fContentSpecTypeStack[fElementDepth] = fCurrentContentSpecType; | public void callStartElement(QName element) throws Exception { if ( DEBUG_SCHEMA_VALIDATION ) System.out.println("\n=======StartElement : " + fStringPool.toString(element.localpart)); // // Check after all specified attrs are scanned // (1) report error for REQUIRED attrs that... | 6373 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6373/b36768aae85d6d13bc8c8289ca78efb212c8fb8f/XMLValidator.java/clean/src/org/apache/xerces/validators/common/XMLValidator.java | [
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else if ( CModuleProperties.BASE_ADDRESS.equals( entry.getKey() ) ) { | else if ( CModuleProperties.BASE_ADDRESS.equals( property.getKey() ) ) { | public String getColumnText( Object element, int columnIndex ) { if ( element instanceof Map.Entry ) { Map.Entry entry = (Map.Entry)element; if ( CModuleProperties.TYPE.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Type"; } else { Integer type = (Integer)entry.getValue()... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/0db65d300fd055308f3a9471af7d2ae5d2e7f159/ModulePropertyPage.java/buggy/debug/org.eclipse.cdt.debug.ui/src/org/eclipse/cdt/debug/internal/ui/propertypages/ModulePropertyPage.java | [
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consumer.setMessageListener(messageList); | messageList[i] = new MessageList(); consumer.setMessageListener(messageList[i]); | protected void setUp() throws Exception { messageList.setVerbose(true); connections = new Connection[NUMBER_IN_CLUSTER]; producers = new MessageProducer[NUMBER_IN_CLUSTER]; Destination destination = createDestination(); String root = System.getProperty("activemq.store.dir"... | 17032 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17032/8032ef40bea6bb08d0f8151866beadd7cafb9eb1/PeerTransportTest.java/buggy/activemq-core/src/test/java/org/activemq/transport/peer/PeerTransportTest.java | [
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queues[6] = new LocalClusteredQueue(office1, "node1", "sub7", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); | queues[6] = new LocalClusteredQueue(office1, 1, "sub7", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); | protected void clusteredTransactionalRoute(boolean persistent) throws Throwable { ClusteredPostOffice office1 = null; ClusteredPostOffice office2 = null; try { //Start two offices office1 = createClusteredPostOffice("node1", "testgroup"); office2 ... | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/f54f55cea0aabacd10797be5e0ff1d3bd3f8db88/DefaultClusteredPostOfficeTest.java/buggy/tests/src/org/jboss/test/messaging/core/plugin/postoffice/cluster/DefaultClusteredPostOfficeTest.java | [
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throw new RuntimeException( "Result already set to "+result+ ", won't replace with "+r); | return false; | public final void setResult(Object r, long ttl) { if (r == null) { r = getDefaultResult(); } Set s; synchronized (lock) { if (result != null) { if (r == TIMEOUT || result == TIMEOUT) { // okay, ignored timeout return; } throw new RuntimeException( ... | 7981 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7981/4c10453b9ea9a7f21fdd670b1ff4848b2adf96dd/Response.java/buggy/core/src/org/cougaar/core/service/wp/Response.java | [
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ProjectBrowser.TheInstance.setTarget(newOper); | ProjectBrowser.getInstance().setTarget(newOper); | public void addOperation() { Object target = getTarget(); if (target instanceof MClassifier) { MOperation newOper = UmlFactory.getFactory().getCore().buildOperation( (MClassifier) target); ProjectBrowser.TheInstance.setTarget(newOper); } ... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/1ebb17ac06205415cc8d51f57abdfb1e5ec54d76/PropPanelClassifier.java/buggy/src_new/org/argouml/uml/ui/foundation/core/PropPanelClassifier.java | [
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new String[]{"" + meta_id, "" + keywordId} ); | new String[]{"" + meta_id, "" + keywordId} ); | private void addExistingKeywordToDocument( int meta_id, String keyword ) { int keywordId = Integer.parseInt( database.sqlQueryStr( "SELECT class_id FROM classification WHERE code = ?", new String[]{ keyword } ) ); database.sqlUpdateQuery( "INSERT INTO meta_classification (meta_id, cl... | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/ef706636437631ae134b63e6e75c73e2593037e6/DocumentMapper.java/buggy/server/src/imcode/server/document/DocumentMapper.java | [
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debug = PrefUtil.getAPIPreferenceStore(). getBoolean(IWorkbenchPreferenceConstants.SHOW_SYSTEM_JOBS); | private ProgressViewUpdater() { createUpdateJob(); collectors = new IProgressUpdateCollector[0]; ProgressManager.getInstance().addListener(this); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/5227d0f0929c20b7aa7fd58b712e727c4f08ba91/ProgressViewUpdater.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/ProgressViewUpdater.java | [
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Context cx = Context.getCurrentContext(); | private static NativeDate checkInstance(Scriptable obj, Function funObj) { if (obj == null || !(obj instanceof NativeDate)) { Context cx = Context.getCurrentContext(); String name = ((NativeFunction) funObj).names[0]; String msg = Co... | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/389c4e220eb65fcf55f31adcbb6a3038075ee691/NativeDate.java/clean/js/rhino/org/mozilla/javascript/NativeDate.java | [
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stub.addChangeListener(listener2); | observable.addChangeListener(listener2); | public void testChangeListener() throws Exception { assertFalse(stub.hasListeners()); ChangeListener listener1 = new ChangeListener(); assertFalse(stub.firstListenerAdded); stub.addChangeListener(listener1); assertTrue(stub.firstListenerAdded); stub.firstListenerAdded = false; assertTrue(stub.hasListeners... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/c8f2cc5874f2e6247a2cbb9878a80029b7203e0a/AbstractObservableTest.java/buggy/tests/org.eclipse.jface.tests.databinding/src/org/eclipse/jface/tests/internal/databinding/provisional/observable/AbstractObservableTest.java | [
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ChemObject chemObject = new ChemObject(); | ChemObject chemObject = builder.newChemObject(); | public void testClone() { ChemObject chemObject = new ChemObject(); chemObject.setFlag(3, true); // test cloning of itself Object clone = chemObject.clone(); assertTrue(clone instanceof ChemObject); } | 45167 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45167/2569471249d8066c9cb1c037569a570e039ed288/ChemObjectTest.java/clean/src/org/openscience/cdk/test/ChemObjectTest.java | [
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throws Exception | throws IOException | protected void processPluginDescriptor( MojoDescriptor mojoDescriptor, String destinationDirectory ) throws Exception { String id = mojoDescriptor.getId(); FileWriter writer = new FileWriter( new File( destinationDirectory, id + "-plugin.xml" ) ); XMLWriter w = new PrettyPrintXMLWrite... | 50542 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50542/24c6328ad361f8e709e2b3fddefd9cde220a0628/PluginXdocGenerator.java/clean/maven-plugin-tools/maven-plugin-tools-api/src/main/java/org/apache/maven/tools/plugin/generator/PluginXdocGenerator.java | [
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private void drawRoute() { Route route = m_route; if(route == null) return; Graphics2D graphics = (Graphics2D) getOffscreenGraphics(); graphics.setStroke(new BasicStroke(3.5f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND)); graphics.setPaint(Color.red); graphics.setRenderingHint(RenderingHints.KEY_ANTIALIAS... | 8909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8909/6d4902f6fb4cc244abe3aaada952f389c483c4fe/MapPanel.java/clean/triplea/src/games/strategy/triplea/ui/MapPanel.java | [
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ProbabilisticTimer timer) { | ProbabilisticTimer timer, Object key) { | boolean scheduleHash(byte[] C, byte[] V, CachedUrlSet urlSet, ProbabilisticTimer timer) { MessageDigest hasher = null; try { hasher = MessageDigest.getInstance(HASH_ALGORITHM); } catch (NoSuchAlgorithmException ex) { return false; } hasher.update(C, 0, C.length); hash... | 8150 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8150/4e2c0bcca126e1326f7b6f953992d98b5f61682e/NamePoll.java/clean/src/org/lockss/poller/NamePoll.java | [
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in = new DataInputStream( new BufferedInputStream(new FileInputStream(id), 4096)); fileLength = in.available(); | in = new RandomAccessFile(id, "r"); | protected void initFile(String id) throws FormatException, IOException { super.initFile(id); in = new DataInputStream( new BufferedInputStream(new FileInputStream(id), 4096)); fileLength = in.available(); offsets = new Vector(); byte[] list = new byte[4]; String listString; type = readString... | 55415 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55415/a4d6fe10f79636baabec0b085328df83170bca33/AVIReader.java/clean/loci/formats/AVIReader.java | [
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Token xsp; xsp = jj_scanpos; if (jj_3_6()) { jj_scanpos = xsp; if (jj_3R_200()) { jj_scanpos = xsp; if (jj_scan_token(80)) return true; } } | if (jj_3R_200()) return true; | final private boolean jj_3R_187() { Token xsp; xsp = jj_scanpos; if (jj_3_6()) { jj_scanpos = xsp; if (jj_3R_200()) { jj_scanpos = xsp; if (jj_scan_token(80)) return true; } } return false; } | 45569 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45569/30dbed0065b5a20aa4e60ae16f7a8e47197c4cee/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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((MNamespace) handle).removeOwnedElement((MModelElement) value); | ((MNamespace) handle).removeOwnedElement((MModelElement) value); | public static void removeOwnedElement(Object handle, Object value) { if (handle instanceof MNamespace && value instanceof MModelElement) { ((MNamespace) handle).removeOwnedElement((MModelElement) value); } throw new IllegalArgumentException("Unrecognized object... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/23464f9cbc3169e9d2f1919998cae2c59b514985/ModelFacade.java/buggy/src_new/org/argouml/model/ModelFacade.java | [
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File fout = new File(XmlFile.prefsDir()+LocoFile.fileLocation+mToEntry.getFileName()); | File fout = new File(LocoFile.getFileLocation()+mToEntry.getFileName()); | boolean doTransfer() { // read the file for the "from" entry, create a new entry, write it out // ensure preferences will be found for read XmlFile.ensurePrefsPresent(XmlFile.prefsDir()); XmlFile.ensurePrefsPresent(XmlFile.prefsDir()+LocoFile.fileLocation); // locate the file ... | 2652 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2652/2ce666c09cb5eb0a805ee5c8f311f418219a5b68/ImportRosterItemAction.java/clean/jmri/jmrit/roster/ImportRosterItemAction.java | [
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