rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
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verifyAnticipated(2000); | verifyAnticipated(20000); | public void testReparentCausesStatusChange() { m_pollerConfig.setNodeOutageProcessingEnabled(true); MockNode node1 = m_network.getNode(1); MockNode node2 = m_network.getNode(2); MockInterface node1Iface = m_network.getInterface(1, "192.168.1.1"); MockInterface reparentedIface = m_... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/63ea02f21c3a123dc08712837e512664c4c6c32e/PollerTest.java/clean/src/services/org/opennms/netmgt/poller/PollerTest.java | [
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showSystemMenu(folder.getTabFolder().getSystemMenuLocation(), getSite().getSelectedPart()); | public void showSystemMenu() { } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/a44e3679b294ff539fce71b7e835499b2c444fa7/TabbedStackPresentation.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/presentations/newapi/TabbedStackPresentation.java | [
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log("Reading filters from " + filtersFile, Project.MSG_VERBOSE ); | log("Reading filters from " + filtersFile, Project.MSG_VERBOSE); | public void readFiltersFromFile(File filtersFile) throws BuildException { if (isReference()) { throw tooManyAttributes(); } if (filtersFile.isFile()) { log("Reading filters from " + filtersFile, Project.MSG_VERBOSE ); FileInputStream in = null; try { ... | 639 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/639/6154080061f869b4e425d608da3bd61fad967564/FilterSet.java/buggy/src/main/org/apache/tools/ant/types/FilterSet.java | [
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Integer key = new Integer(field); Set values = (Set) fieldValues.get(key); if (values == null) { values = new HashSet(); fieldValues.put(key, values); } values.add(value); } | Integer key = new Integer(field); Set values = (Set) fieldValues.get(key); if (values == null) { values = new HashSet(); fieldValues.put(key, values); } values.add(value); } | private void addFieldValue(int field, String value) { Integer key = new Integer(field); Set values = (Set) fieldValues.get(key); if (values == null) { values = new HashSet(); fieldValues.put(key, values); } values.add(value); } | 52526 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52526/bc5f21c5a32614ef5c419366046d5f643c6e93ff/DataDictionary.java/clean/src/quickfix/DataDictionary.java | [
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final Color borderColor = new Color(titleArea.getDisplay(),ViewForm.borderOutsideRGB); titleArea.addPaintListener(new PaintListener(){ public void paintControl(PaintEvent e){ | final Color borderColor = new Color(titleArea.getDisplay(), ViewForm.borderOutsideRGB); titleArea.addPaintListener(new PaintListener() { public void paintControl(PaintEvent e) { | private Composite createTitleArea(Composite parent) { // Create the title area which will contain // a title, message, and image. titleArea = new Composite(parent, SWT.NONE); GridLayout layout = new GridLayout(); layout.marginHeight = 2; layout.marginWidth = 2; layout.verticalSpacing = 0; layout.horizontalSpac... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/0a89689d9b30b50ef4ada7d54613cf836432c498/PreferenceDialog.java/clean/bundles/org.eclipse.jface/src/org/eclipse/jface/preference/PreferenceDialog.java | [
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expectedTable.addCell("Node 1", "Critical", "element/node.jsp?node=null"); | expectedTable.addCell("Node 1", "Critical", "element/node.jsp?node=1"); | public void runTestCreateStatus() { expectEverything(); expect(m_monitoredServiceDao.findByApplication(m_application1)).andReturn(m_applicationServices1); replayEverything(); SimpleWebTable table = m_service.createStatusTable(m_locationDefinition1.getName(), ... | 25465 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25465/6c59a7e3b2f1ad843e281c2374851ebf421fe074/DefaultDistributedStatusServiceTest.java/buggy/opennms-webapp/src/test/java/org/opennms/web/svclayer/support/DefaultDistributedStatusServiceTest.java | [
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public void visitCALOAD(CALOAD obj) { pushValue(Type.CHAR); } | public void visitCALOAD(CALOAD obj) { consumeStack(obj); pushValue(Type.CHAR); } | public void visitCALOAD(CALOAD obj) { pushValue(Type.CHAR); } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/b75aa9fb6d1d4ee62fc08bb62f57dc88de7f092d/TypeFrameModelingVisitor.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/ba/TypeFrameModelingVisitor.java | [
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final CodeSource source = resource.getCodeSource(); | final CodeSource source = resource.getCodeSource(); | protected Class findClass(final String className) throws ClassNotFoundException { // Just try to find the resource by the (almost) same name String resourceName = className.replace('.', '/') + ".class"; Resource resource = findURLResource(resourceName); if (resource == null) throw new ClassNotFou... | 47947 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47947/c7beb2e15aab929442532def7adc6eca7478246d/URLClassLoader.java/clean/java/net/URLClassLoader.java | [
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public WindowPeer createEmbeddedWindow (int window_id, int width, int height); | public EmbeddedWindowPeer createEmbeddedWindow (EmbeddedWindow w); | public WindowPeer createEmbeddedWindow (int window_id, int width, int height); | 25352 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25352/c3d201dee6a1d42270bf2d1388faf42a4a5da8c4/EmbeddedWindowSupport.java/buggy/libjava/gnu/java/awt/EmbeddedWindowSupport.java | [
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protected DRDAResultSet(ResultSet rs) throws SQLException | protected DRDAResultSet() | protected DRDAResultSet(ResultSet rs) throws SQLException { setResultSet(rs); state = NOT_OPENED; } | 56322 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56322/82c7dde0566c7b457f3906cdc8bd5062ecdaa09d/DRDAResultSet.java/buggy/java/drda/org/apache/derby/impl/drda/DRDAResultSet.java | [
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catch(IllegalMonitorStateException ex) { throw ex; } | public Object peek() throws QueueClosedException { Object retval=null; synchronized(mutex) { while(l.size() == 0) { if(closed) throw new QueueClosedException(); try { mutex.wait(); } catch(Ille... | 49475 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49475/4071daaa0d7c1c82cdc06c63ce8b9cfb7b0eff8c/LinkedListQueue.java/buggy/src/org/jgroups/util/LinkedListQueue.java | [
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int tend = getLastNonSkippedChild(c,box); | int tend = getLastNonSkippedChild(c, box); | public static void paintBlockContext(Context c, Box box, boolean restyle) { //if (box.getPersistentBFC() != null) c.pushBFC(box.getPersistentBFC()); c.translate(box.x, box.y); c.getGraphics().translate(box.x, box.y); if (box.getPersistentBFC() != null) { c.pushBFC(new BlockFor... | 53937 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53937/c96efe21dd32b0a4f0420c8495d49144792cbc9d/BlockRendering.java/clean/src/java/org/xhtmlrenderer/render/BlockRendering.java | [
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throws NotImplementedException | public int getAccessibleSelectionCount() throws NotImplementedException { return 0; } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/7a2e92fd1a70a7ebb674875e63bf471ea5bca540/JMenu.java/clean/core/src/classpath/javax/javax/swing/JMenu.java | [
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result = 2; | return 2; | public static int getConversionWeight(Object fromObj, Class to) { int fromCode = getJSTypeCode(fromObj); int result = CONVERSION_NONE; switch (fromCode) { case JSTYPE_UNDEFINED: if (to == ScriptRuntime.StringClass || to == ScriptRuntime.ObjectClass) { ... | 19000 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19000/11eddf0c611b2537267e99835d22096964c80528/NativeJavaObject.java/buggy/src/org/mozilla/javascript/NativeJavaObject.java | [
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"a.alarmID as alarmID" +clause); | "a.alarmID as alarmID " +clause); | public AlarmMappingQuery(DataSource ds, String clause) { super(ds, "SELECT " + "a.eventUei as eventUei, " + "a.dpName as dpName, " + "a.nodeID as nodeID, " + "a.ipaddr as ipaddr, " + "a.serviceID as serviceID, " + "a.reductionKey as reductionKey, " ... | 25465 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25465/bf0f4e4be3a381bb06f5e87e9095dbff5664ee04/AlarmMappingQuery.java/clean/opennms-model/src/main/java/org/opennms/netmgt/dao/jdbc/alarm/AlarmMappingQuery.java | [
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private static boolean testAndClearMark(ObjectReference object) throws InlinePragma { | private static boolean testAndClearMark(ObjectReference object) throws InlinePragma { | private static boolean testAndClearMark(ObjectReference object) throws InlinePragma { Word oldValue; do { oldValue = ObjectModel.prepareAvailableBits(object); Word markBit = oldValue.and(GC_MARK_BIT_MASK); if (markBit.isZero()) return false; } while (!ObjectModel.attemptAvailableBits(objec... | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/30524c62fa391922d51289c03075f714c772951c/MarkCompactSpace.java/buggy/MMTk/src/org/mmtk/policy/MarkCompactSpace.java | [
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EditorCell_Error noRefCell = EditorCell_Error.create(context, node, ""); | EditorCell_Error noRefCell = EditorCell_Error.create(context, node, "<no link>"); | public EditorCell createLinkReferenceCellinternal(EditorContext context, SNode node) { SNode effectiveNode = null; effectiveNode = node.getReferent("link"); LinkDeclaration linkDeclaration = SModelUtil.getLinkDeclaration(node, "link", context.getOperationContext().getScope()); SReference reference = node.... | 14939 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/14939/85c26c7bc8c610037ae198e46166d3ad7842ad13/SLinkTargetAccess_Editor.java/clean/source_gen/jetbrains/mps/bootstrap/smodelLanguage/editor/SLinkTargetAccess_Editor.java | [
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buf.append(minutes + "M"); | buf.append(minutes).append('M'); | public String toString() { StringBuffer buf = new StringBuffer(); if (signum < 0) { buf.append('-'); } buf.append('P'); if (years != null) { buf.append(years + "Y"); } if (months != null) { buf.append(months + "M"); } ... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/b414bd5a51a69161c61ffcd585bdb76ec3eff180/DurationImpl.java/clean/src/org/apache/xerces/jaxp/datatype/DurationImpl.java | [
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requestLine = casing.dequeueRequest(); | private Object firstLine(ByteBuffer data) throws ParseException { if (!clientSide) { requestLine = casing.dequeueRequest(); return statusLine = statusLine(data); } else { return requestLine = requestLine(data); } } | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/858eacdb9a813cb806a97a3e3ee503ae037263dc/HttpParser.java/clean/tran/http/main/com/metavize/tran/http/HttpParser.java | [
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if (appClientRadioButton.getSelection()) return getAppClientNode(); if (connectorRadioButton != null && connectorRadioButton.getSelection()) return getConnectorNode(); if (ejbRadioButton != null && ejbRadioButton.getSelection()) return getEjbNode(); if (webRadioButton != null && webRadioButton.getSelection()) return ge... | if (appClientRadioButton.getSelection()) return getAppClientNode(); if (connectorRadioButton != null && connectorRadioButton.getSelection()) return getConnectorNode(); if (ejbRadioButton != null && ejbRadioButton.getSelection()) return getEjbNode(); if (webRadioButton != null && webRadioButton.getSelection()) return ge... | private GenericWizardNode getWizardNodeFromSelection() { if (appClientRadioButton.getSelection()) return getAppClientNode(); if (connectorRadioButton != null && connectorRadioButton.getSelection()) return getConnectorNode(); if (ejbRadioButton != null && ejbRadioButton.getSelection()) return getEjbNode(); if... | 8196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8196/00f6a4d44cf71e0497aeeae1b2008a2226b5439d/NewJ2EEComponentSelectionPage.java/buggy/plugins/org.eclipse.jst.j2ee.ui/j2ee_ui/org/eclipse/jst/j2ee/internal/wizard/NewJ2EEComponentSelectionPage.java | [
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assertEquals("{" + SystemUtils.LINE_SEPARATOR + "foo=bar" + SystemUtils.LINE_SEPARATOR + "foozle=doozle" + SystemUtils.LINE_SEPARATOR + "}", PropertiesHelper.propertiesToString(props, true)); | assertEquals("{" + SystemUtils.LINE_SEPARATOR + "foo=bar" + SystemUtils.LINE_SEPARATOR + "foozle=doozle" + SystemUtils.LINE_SEPARATOR + "}", PropertiesHelper .propertiesToString(props, true)); | public void testMapTwoElements() throws Exception { Map props = CollectionUtil.mapWithKeysAndValues(HashMap.class, new Object[]{"foo", "foozle"}, new Object[]{"bar", "doozle"}); assertEquals("{foo=bar, foozle=doozle}", PropertiesHelper.propertiesToString(props, false)); assertEquals("{" ... | 2370 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2370/5c7badd7924d8f30223c81136f63117d913be921/PropertiesHelperTestCase.java/clean/src/test/java/org/mule/test/util/PropertiesHelperTestCase.java | [
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if (!(dm instanceof MClassifier)) return NO_PROBLEM; MClassifier cls = (MClassifier) dm; Vector namesSeen = new Vector(); Collection assocEnds = cls.getAssociationEnds(); if (assocEnds == null) return NO_PROBLEM; Iterator enum = assocEnds.iterator(); while (enum.hasNext()) { MAssociationEnd myAe = (MAssociationEnd) en... | boolean problem = NO_PROBLEM; if (ModelFacade.isAClassifier(dm)) { Collection col = CoreHelper.getHelper().getAssociations(dm); List names = new ArrayList(); Iterator it = col.iterator(); String name = null; while (it.hasNext()) { name = ModelFacade.getName(it.next()); if (name == null || name.equals("")) continue; if ... | public boolean predicate2(Object dm, Designer dsgr) { if (!(dm instanceof MClassifier)) return NO_PROBLEM; MClassifier cls = (MClassifier) dm; Vector namesSeen = new Vector(); Collection assocEnds = cls.getAssociationEnds(); if (assocEnds == null) return NO_PROBLEM; Iterator enum = assocEnds.iterato... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/9eda3ebb05b231fea6a868e0ddf77960398b16cb/CrOppEndConflict.java/clean/src_new/org/argouml/uml/cognitive/critics/CrOppEndConflict.java | [
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case 412 : | case 407 : | protected void consumeRule(int act) { switch ( act ) { case 29 : // System.out.println("Type ::= PrimitiveType"); consumePrimitiveType(); break ; case 43 : // System.out.println("ReferenceType ::= ClassOrInterfaceType"); consumeReferenceType(); break ; case 52 : // System.out.println("Qua... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/ca8ac59322f9a5546de88cf1c276f2947f3dabe2/Parser.java/buggy/org.eclipse.jdt.core/compiler/org/eclipse/jdt/internal/compiler/parser/Parser.java | [
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context.info( message ); | context.verbose( message ); | private void logExecDetails( final ExecMetaData metaData, final TaskContext context ) throws TaskException { if( context.isInfoEnabled() ) { final String cmdline = FileUtils.formatCommandLine( metaData.getCommand() ); final String message... | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/70d6a6fb3c092c7ecd8f1901169e816ce0244042/Execute.java/clean/proposal/myrmidon/src/java/org/apache/myrmidon/framework/Execute.java | [
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part.dispose(); | ref0.dispose(); | private void disposePart(IWorkbenchPartReference ref) { final IWorkbenchPart part = ref.getPart(false); if(part == null) return; Platform.run(new SafeRunnable() { public void run() { part.dispose(); } public void handleException(Throwable e) { //Exception has already being logged by Core. Do nothing. } });} | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/2513349bf76e774b17f5385216fb6cc6eeb0d6b5/WorkbenchPage.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/WorkbenchPage.java | [
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try { /* * First, the reference insertion handler */ | public void runTest () { /* * lets make a Context and add the event cartridge */ VelocityContext inner = new VelocityContext(); /* * Now make an event cartridge, register all the * event handlers (at once) and attach it to the * Context ... | 9291 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9291/59780514f566344db5c57333d6182e2f5f040af7/EventHandlingTestCase.java/buggy/src/java/org/apache/velocity/test/EventHandlingTestCase.java | [
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return getConstant((NODE)rubyFrame.getCbase(), (RubyId)node.nd_vid(), self); | return getConstant((NODE)getRubyFrame().getCbase(), (RubyId)node.nd_vid(), self); | public RubyObject eval(RubyObject self, NODE n) { NODE node = n; RubyBoolean cond = null; RubyObject[] args = null; RubyObject value = null; RubyObject result = null; RubyModule rubyClass = null; // int state; // RubyOriginalMethods rom = getRu... | 45298 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45298/f220dcff8a7e427e32a7f1f1bc78f38876b83620/RubyInterpreter.java/clean/org/jruby/interpreter/RubyInterpreter.java | [
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list = new ArrayList(nsArray.length); | list = new ArrayList(namespaces.size()); | public Collection getAllNamespaces(Object ns) { if (ns == null || !(ns instanceof Namespace)) { return new ArrayList(); } Collection namespaces = ((Namespace) ns).getOwnedElement(); // the list of namespaces to return List list = Collections.EMPTY_LIST; // if the... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/763a03f38f2c72064440c3c169823c3b0ca4c2c7/ModelManagementHelperMDRImpl.java/buggy/src/model-mdr/src/org/argouml/model/mdr/ModelManagementHelperMDRImpl.java | [
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public RubyNumeric op_invert() { | public IRubyObject op_invert() { | public RubyNumeric op_invert() { return bigNorm(getRuntime(), getValue().not()); } | 47134 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47134/803c66ee682936beecc8a43fe2cfc90fe5645b22/RubyBignum.java/buggy/src/org/jruby/RubyBignum.java | [
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MetaClass metaClass = type.newSingletonClass(parentModule); | MetaClass newMetaClass = type.newSingletonClass(parentModule); | public MetaClass makeMetaClass(RubyClass type, RubyModule parentModule) { MetaClass metaClass = type.newSingletonClass(parentModule); if (!isNil()) { setMetaClass(metaClass); } metaClass.attachToObject(this); return metaClass; } | 48300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48300/803c66ee682936beecc8a43fe2cfc90fe5645b22/RubyObject.java/clean/src/org/jruby/RubyObject.java | [
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memento.putString( TAG_COMMAND_ID, imageBindingDefinition.getCommandId()); memento.putString( TAG_IMAGE_STYLE, imageBindingDefinition.getImageStyle()); memento.putString(TAG_IMAGE_URI, imageBindingDefinition.getImageUri()); memento.putString(TAG_LOCALE, imageBindingDefinition.getLocale()); memento.putString(TAG_PLATFOR... | memento .putString(TAG_COMMAND_ID, imageBindingDefinition .getCommandId()); memento.putString(TAG_IMAGE_STYLE, imageBindingDefinition .getImageStyle()); memento.putString(TAG_IMAGE_URI, imageBindingDefinition.getImageUri()); memento.putString(TAG_LOCALE, imageBindingDefinition.getLocale()); memento.putString(TAG_PLATFO... | static void writeImageBindingDefinition( IMemento memento, ImageBindingDefinition imageBindingDefinition) { if (memento == null || imageBindingDefinition == null) throw new NullPointerException(); memento.putString( TAG_COMMAND_ID, imageBindingDefinition.getCommandId()); memento.putString( TAG_IMAGE_STYLE... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/664efbbd6fd6dba5c4d118b10afe31ab34b6890a/Persistence.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/commands/Persistence.java | [
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VM.shutdown(VM.exitStatusMiscTrouble); | VM.shutdown(VM.EXIT_STATUS_MISC_TROUBLE); | public void activate() throws UninterruptiblePragma { if (active == true) { VM.sysWriteln("***VM_TraceWriter.activate() active == true! PID ", ((VM_TraceWriter)this).getPid(),"***"); VM.shutdown(VM.exitStatusMiscTrouble); } if(VM_HardwarePerformanceMonitors.verbose>=2)VM.sysWriteln("VM_Trac... | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/d6068c5ba70e6ee40bffe9c49b0e352cd82ebe7e/VM_TraceWriter.java/clean/rvm/src/vm/HPM/VM_TraceWriter.java | [
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public void handleFiles(List files) { try { DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); Document doc = db.newDocument(); Element overviewRoot = Util.addChildElement(doc, "overview-frame", null); Iterator iter = files.iterator(); whil... | 8610 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8610/6c6a574b8da6a8f7989e99ea78e4db5cb63abe6b/TaglibReport.java/buggy/tag-doc/src/java/org/apache/struts/taskdefs/TaglibReport.java | [
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if (inputState.guessing==0) { astFactory.addASTChild(currentAST, returnAST); } | astFactory.addASTChild(currentAST, returnAST); | public final void branchStatement() throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST branchStatement_AST = null; switch ( LA(1)) { case LITERAL_return: { AST tmp181_AST = null; if (inputState.guessing==0) { tmp181_AST = astFactory.create(LT(... | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/5c53aea8416ae7d318cf0157b4690ba71badb0f9/GroovyRecognizer.java/clean/src/main/org/codehaus/groovy/antlr/parser/GroovyRecognizer.java | [
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NcbiGeneLoader loader = new NcbiGeneLoader(persisterHelper); | NcbiGeneLoader loader = new NcbiGeneLoader( persisterHelper ); | public void testGeneLoader() throws Exception { GeneService geneService = ( GeneService ) getBean( "geneService" ); NcbiGeneLoader loader = new NcbiGeneLoader(persisterHelper); String geneInfoTestFile = "/gemma-core/src/test/resources/data/loader/genome/gene/gene_info.sample.gz"; ... | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/71aadd109392fe18e3f729a558caa5042ec8f633/NCBIGeneIntegrationTest.java/clean/gemma-core/src/test/java/ubic/gemma/loader/genome/gene/ncbi/NCBIGeneIntegrationTest.java | [
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public byte getByte (int parameterIndex) throws SQLException { } | public byte getByte(int parameterIndex) throws SQLException { return 0; } | public byte getByte (int parameterIndex) throws SQLException { // XXX-Not Implemented } | 46409 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46409/6a061da272f04e1463864065f87f1f3fd61d6162/CallableStatement.java/buggy/src/interfaces/jdbc/postgresql/CallableStatement.java | [
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statement.getQueryTimeout(), statement.getMaxRows(), true); | statement.getQueryTimeout(), statement.getMaxRows(), statement.getMaxFieldSize(), true); | private void cursorCreate(String sql, String procName, ParamInfo[] parameters) throws SQLException { // boolean isSelect = false; SQLWarning warning = null; // // Validate the SQL statement to ensure we have a se... | 2029 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2029/76d8968e7ce2feb24b67a175f377a6060baba31e/CachedResultSet.java/clean/src/main/net/sourceforge/jtds/jdbc/CachedResultSet.java | [
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Font wizardFont = parent.getFont(); | public void createControl(Composite parent) { initializeDialogUnits(parent); Composite composite = new Composite(parent, SWT.NULL); composite.setLayout(new GridLayout()); composite.setLayoutData(new GridData(GridData.VERTICAL_ALIGN_FILL | GridData.HORIZONTAL_ALIGN_FILL)); composite.setFont(parent.getFont()); ... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/b353c738722dfcaf60a18a8b3be623b8b66f8fe2/WizardPreferencesPage.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/wizards/preferences/WizardPreferencesPage.java | [
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return; | public void activateLogging() throws NativeLibException { return; } | 58440 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58440/98333eede78b9ac1131e72aef96a4d63b6ae031f/RegistryHandler.java/buggy/izpack-src/trunk/src/lib/com/izforge/izpack/util/os/RegistryHandler.java | [
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if (ChainBuilderAgent.DEBUG) { | if (ChainBuilderAgent.DEBUG_TIMING) { | public void buildGUI() { Container content = getContentPane(); content.setLayout(new BorderLayout()); chainCanvas = new ChainPaletteCanvas(dataManager); chainCanvas.setContents(dataManager.getChains()); long start; if (ChainBuilderAgent.DEBUG) start = System.currentTimeMillis(); chainCanvas.layoutContents()... | 55464 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55464/630a53d68f5d29c53d2485557b18599785befb83/ChainPaletteWindow.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/ui/ChainPaletteWindow.java | [
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} | private int yylex() { int c; boolean space_seen = false; boolean cmd_state; kwtable kw; cmd_state = ph.isCommandStart(); ph.setCommandStart(false); retry : for (; ; ) { switch (c = nextc()) { case '\0': // NUL case '\00... | 48072 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48072/75e51682c6dfb1ff67ffb81cea2dfd23c3e3a9f4/DefaultRubyParser.java/clean/org/jruby/parser/DefaultRubyParser.java | [
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return null; | } if (srefs == null || srefs.length == 0) { try { srefs = c_BundleContext.getServiceReferences( "org.osgi.service.cm.ManagedServiceFactory", "(" + Constants.SERVICE_PID + "=" + pid + ")"); } catch (Exception ex) { return null; } | public static Bundle findBundle(String pid) { final ServiceReference sr = c_BundleContext.getServiceReference(pid); if (sr == null) { //try to find managed factories with pid as filter ServiceReference[] srefs = null; try { srefs = c_BundleContext.getServiceReferences( "org.osg... | 23249 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/23249/e668e8b1f331ef44e220b5c2af6a8835ae8393f5/Activator.java/buggy/src/java/net/coalevo/manager/impl/Activator.java | [
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public void setUp() throws RuleSetNotFoundException { rule = findRule("controversial", "OnlyOneReturn"); } | public void setUp() { rule = findRule("controversial", "OnlyOneReturn"); } | public void setUp() throws RuleSetNotFoundException { rule = findRule("controversial", "OnlyOneReturn"); } | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/4e45de9075eeb015245ff09f8f8c58cf0f98bbf3/OnlyOneReturnRuleTest.java/clean/pmd/regress/test/net/sourceforge/pmd/rules/design/OnlyOneReturnRuleTest.java | [
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this.decl = decl; | protected EntityReferenceImpl(Location location, //EntityDeclaration decl, String name, String baseUri, String publicId, String systemId, String replacementText) { super(location); //this... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/89208158729137f73c8259a059fc5845c4da3e56/EntityReferenceImpl.java/buggy/core/src/classpath/gnu/gnu/xml/stream/EntityReferenceImpl.java | [
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protected static String executeHelp(String mdxCmd) { StringBuffer buf = new StringBuffer(200); String[] tokens = mdxCmd.split("\\s+"); int cmd = UNKNOWN_CMD; if (tokens.length == 1) { buf.append("Commands:"); cmd = ALL_CMD; } else if (tokens.length == 2) { ... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/6bb94617d887d46c85747d7409fa32adc3ccb0c2/CmdRunner.java/clean/src/main/mondrian/tui/CmdRunner.java | [
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public void setFrom( String address ) { if( this.from != null ) { throw new BuildException( "Emails can only be from one address" ); | public void setFrom(String address) { if (this.from != null) { throw new BuildException("Emails can only be from one address"); | public void setFrom( String address ) { if( this.from != null ) { throw new BuildException( "Emails can only be from one address" ); } this.from = new EmailAddress( address ); } | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/c6c232893c39257745a8f7a618bcdb5c59791cae/EmailTask.java/clean/src/main/org/apache/tools/ant/taskdefs/email/EmailTask.java | [
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public void setPlayerName(String playerName) { if(playerName == null) { m_playerLabel.setText("-"); JButton button = new JButton(m_takeAction); button.setMargin(BUTTON_INSETS); m_playerComponent = button; } else { m_playerLabel.setText(playerName); if(playerName.equals(m_messenger... | 8909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8909/6d4902f6fb4cc244abe3aaada952f389c483c4fe/ClientStartup.java/buggy/triplea/src/games/strategy/engine/framework/ui/ClientStartup.java | [
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return new Integer(object.trim()); | return new Integer(value.trim()); | public Object convertTo(Class paramType, String object) throws ConversionException { try { if (paramType == Boolean.TYPE || paramType == Boolean.class) { return new Boolean(object.trim()); } else if (paramType == Byte.TYPE || paramType == B... | 45384 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45384/7547063298291f41840aee0b03582a3f6bc04cd6/PrimitiveConverter.java/clean/java/uk/ltd/getahead/dwr/convert/PrimitiveConverter.java | [
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weapon.name = "Light Particle Projection Cannon"; | weapon.name = "Light PPC"; | private static WeaponType createISLightPPC() { WeaponType weapon = new WeaponType(); weapon.techLevel = TechConstants.T_IS_LEVEL_2; weapon.name = "Light Particle Projection Cannon"; weapon.setInternalName(weapon.name); weapon.addLookupName("ISLightPPC"); weapon.addLookupNam... | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/36a86fac127cf1abfa95e2192a37eec01f07d6e7/WeaponType.java/buggy/megamek/src/megamek/common/WeaponType.java | [
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if (isWordArrayType() || isCodeArrayType()) { return getArrayElementType(); | VM_TypeReference elem = getArrayElementType(); if (elem.isArrayType()) { return elem.getInnermostElementType(); | public final VM_TypeReference getInnermostElementType() { if (isWordArrayType() || isCodeArrayType()) { return getArrayElementType(); } else { return findOrCreate(classloader, name.parseForInnermostArrayElementDescriptor()); } } | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/9d6c9081e05cd51e4a00e6331b4995d639eb670e/VM_TypeReference.java/buggy/rvm/src/com/ibm/jikesrvm/classloader/VM_TypeReference.java | [
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fireValueChanged(new TreeSelectionEvent(this, path, true, leadPath, path)); | leadRow = getRow(path); leadIndex = selection.length - 1; fireValueChanged(new TreeSelectionEvent(this, path, true, oldLead, leadPath)); | public void addSelectionPath(TreePath path) { if (! isPathSelected(path)) { if (isSelectionEmpty()) setSelectionPath(path); else { TreePath[] temp = new TreePath[selection.length + 1]; System.arraycopy(selection, 0, temp, 0, selection.length); temp[temp.length - 1] = path; selection = new Tre... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/8e6a933c7311b8af73a149d26777089b7dc8bd68/DefaultTreeSelectionModel.java/clean/core/src/classpath/javax/javax/swing/tree/DefaultTreeSelectionModel.java | [
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public ClientPut getParent() { | public ClientPutter getParent() { | public ClientPut getParent() { return parent; } | 49933 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49933/d32229c02576d531c915059f111c468591f30e84/SingleFileInserter.java/buggy/src/freenet/client/async/SingleFileInserter.java | [
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return false; | else { return false; } | public boolean canSetProperty(Object object) { if (isSettable) { EditingDomain editingDomain = getEditingDomain(object); if (editingDomain != null) { Resource resource = object instanceof EObject ? ((EObject)object).eResource() : object instanceof Resource ? ... | 11224 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11224/2b126b88585fe396ca80e71074ae20794669b716/ItemPropertyDescriptor.java/buggy/plugins/org.eclipse.emf.edit/src/org/eclipse/emf/edit/provider/ItemPropertyDescriptor.java | [
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description = Messages.getString("problemSeverity.description"); | description = MarkerMessages.problemSeverity_description; | public FieldSeverity() { description = Messages.getString("problemSeverity.description"); //$NON-NLS-1$ } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/9fd38ff5015f18d343d054773283a2bca6122227/FieldSeverity.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/views/markers/internal/FieldSeverity.java | [
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private static double internalUTC(double t) { | private static double internalUTC(double t) { | private static double internalUTC(double t) { return t - LocalTZA - DaylightSavingTA(t - LocalTZA); } | 51275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51275/ba8f69355a752cc7402f5b559a19be4d84c54e22/NativeDate.java/clean/js/rhino/src/org/mozilla/javascript/NativeDate.java | [
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if (stack != null && !stack.empty()) { request.setAttribute(StripesConstants.REQ_ATTR_ACTION_BEAN, stack.pop()); } | Object previous = (stack != null && !stack.empty()) ? stack.pop() : null; request.setAttribute(StripesConstants.REQ_ATTR_ACTION_BEAN, previous); | protected void restoreActionBean(HttpServletRequest request) { Stack stack = getActionBeanStack(request, false); if (stack != null && !stack.empty()) { request.setAttribute(StripesConstants.REQ_ATTR_ACTION_BEAN, stack.pop()); } } | 9306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9306/ceddc8e8d002e140a60e075fe32c5abfad6680de/DispatcherServlet.java/buggy/stripes/src/net/sourceforge/stripes/controller/DispatcherServlet.java | [
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if (new File(outFile).exists()) { | if (fs.exists(outFile)) { | public void merge(String[] inFiles, String outFile) throws IOException { this.inFiles = inFiles; this.outFile = outFile; this.factor = inFiles.length; if (new File(outFile).exists()) { throw new IOException("already exists: " + outFile); } MergeFiles mergeFiles = new MergeFiles(... | 49248 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49248/ee01fef4b4fb82c7492a4a747793839a4d14cd39/SequenceFile.java/clean/src/java/org/apache/hadoop/io/SequenceFile.java | [
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SymbolList gcta = DNATools.createDNA("gcta"); SymbolList gctt = DNATools.createDNA("gctt"); | public void testTooShort() throws IllegalSymbolException, IllegalAlphabetException{ SymbolList zero = DNATools.createDNA(""); SymbolList one = DNATools.createDNA("a"); SymbolList five = DNATools.createDNA("aaaaa"); SymbolList agct3 = DNATools.createDNA("agctagctagct"); SymbolList agct = DNATools.creat... | 50397 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50397/dc62a0a7cf481c21c3be647214959067a3b98f61/MaxMismatchPatternTest.java/clean/tests/org/biojava/bio/search/MaxMismatchPatternTest.java | [
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{ if(getRow() <= getMaxRow()) { if(getRow() < getMaxRow()) { setRow(getRow()+1); | { if(getRow() <= getMaxRow()) { if(getRow() < getMaxRow()) { setRow(getRow()+1); } setAtBegining(false); try { setAllVariable(); table.changeSelection(getRow(), 2, false, false); } catch(ArrayIndexOutOfBoundsException aioobe) { setRow(getRow() - 1); System.out.println("problem"); } if(getRow() == getMaxRow()) { setAtE... | public void mOneRowPlus() //- { if(getRow() <= getMaxRow()) { if(getRow() < getMaxRow()) { setRow(getRow()+1); } setAtBegining(false); try { setAllVariable(); table.changeSelection(getRow(),2,false,false); // za predvijvane... | 12667 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12667/6b93b6232e6573892b4ffefd25f8b5629b857843/FrmNaseleniMesta.java/buggy/src/nom/FrmNaseleniMesta.java | [
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if (isNullable(from)) { return true; } | boolean isNullable(QFrame frame, List equalities) { List cols = new ArrayList(); List ocols = new ArrayList(); QFrame fframe = null; QFrame oframe = null; for (Iterator it = equalities.iterator(); it.hasNext(); ) { Equality eq = (Equality) it.next(); QValue f... | 12196 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12196/f55722558ddefd539eac3380793d11de01f782d0/Generator.java/buggy/archive/qgen/src/com/redhat/persistence/oql/Generator.java | [
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InputSource in; try { in = new InputSource(new FileInputStream(filename)); | System.out.println("Loading classes, parsing "+filename+", and setting up serializer"); InputSource in = new InputSource(new FileInputStream(filename)); DocumentBuilderFactory dfactory = DocumentBuilderFactory.newInstance(); Document doc = dfactory.newDocumentBuilder().parse(in); Transformer serializer = Transfo... | public void doMain(String[] args) { filename = args[0]; xpath = args[1]; if ((filename != null) && (filename.length() > 0) && (xpath != null) && (xpath.length() > 0)) { InputSource in; try { in = new InputSource(new FileInputStream(filename)); } catch (FileNotFoundE... | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/2e8b92984756cc9caa2001d99efdca20961589da/ApplyXPath.java/clean/samples/ApplyXPath/ApplyXPath.java | [
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event.setEventLog("event dao test log"); | event.setEventLog("Y"); event.setEventDisplay("Y"); | public void testSave() { OnmsEvent event = new OnmsEvent(); event.setDistPoller(getDistPollerDao().load("localhost")); event.setEventCreateTime(new Date()); event.setEventDescr("event dao test"); event.setEventHost("localhost"); event.setEventLog("event dao test log"); ... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/d516658447f4d38fe721624210961245a63e060b/EventDaoTest.java/buggy/opennms-model/src/test/java/org/opennms/netmgt/dao/EventDaoTest.java | [
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private boolean init(Display display) { // setup debug mode if required. if (WorkbenchPlugin.getDefault().isDebugging()) { WorkbenchPlugin.DEBUG = true; ModalContext.setDebugMode(true); } // create workbench window manager windowManager = new WindowManager(); IIntroRegistry introRegistry = WorkbenchPlugin.ge... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/ea7ac410ca1679440e06e6471e53f91b8a04e627/Workbench.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/Workbench.java | [
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public ResultsLogger(Date startDt) | private ResultsLogger() | public ResultsLogger(Date startDt) { this.resultDAO = new ChecksumResultDAO(); LOG.info(msg("run-start-time") + ": " + DATE_FORMAT.format(startDt)); } | 49711 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49711/6c35684c85aea40f564514743cf353881f53e165/ResultsLogger.java/buggy/dspace/src/org/dspace/checker/ResultsLogger.java | [
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public static boolean isTrue(boolean expression, String message) { if (!expression) throw new AssertionFailedException("assertion failed; "+message); return expression; | public static boolean isTrue(boolean expression) { return isTrue(expression, ""); | public static boolean isTrue(boolean expression, String message) { if (!expression) throw new AssertionFailedException("assertion failed; "+message); //$NON-NLS-1$ return expression;} | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/2fcc7d0f6d73a0e1ec44b95addeba29a0b163a14/Assert.java/buggy/org.eclipse.jdt.core.tests.builder/src/org/eclipse/jdt/core/tests/builder/Assert.java | [
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prefSize = preferredSize; | prefSize = new Dimension(preferredSize); | public Dimension getPreferredSize() { Dimension prefSize = null; if (preferredSize != null) prefSize = preferredSize; else if (ui != null) { Dimension s = ui.getPreferredSize(this); if (s != null) prefSize = s; } if (prefSize == null) prefSize = super.getPreferr... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/a7c2bfad7a98617f9973c753d7b20b1d8612d7b9/JComponent.java/buggy/core/src/classpath/javax/javax/swing/JComponent.java | [
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TaskUiUtil.openEditor(newTask, true); | public void run() { Task newTask = new Task(TasksUiPlugin.getTaskListManager().genUniqueTaskHandle(), DESCRIPTION_DEFAULT, true); Calendar reminderCalendar = GregorianCalendar.getInstance(); TasksUiPlugin.getTaskListManager().setScheduledToday(reminderCalendar); TasksUiPlugin.getTaskListManager().setReminder(newTa... | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/c6405ae121b75cce2f91e250fae83ffbc9f3c463/NewLocalTaskAction.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/internal/tasks/ui/actions/NewLocalTaskAction.java | [
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token = new Token(TOKEN_SEMI, position, position+1, line, linePosition, text); | token = new Token(TOKEN_SEMI, position, position+1, internalPositionOffset, line, linePosition, text); | public List parseTokens() { List tokens = new ArrayList(); position = -1; line = 0; lines.add(new Integer(0)); while(nextCharacter()) { Token token = null; if(C(0) == '\'') token = matchSingleQuoteString(); else if(C(0) == '\"') ... | 4430 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4430/7f8549f7ce7c14aa4186cb9c323bbc530f854560/Lexer.java/clean/src/org/antlr/works/parser/Lexer.java | [
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fIncludeSymPathsList.expandElement(getSelectedGroup(), 1); | fIncludeSymPathsList.selectElements(new StructuredSelection(curr)); | protected void addContributed() { CPElement[] includes = openContainerSelectionDialog(null); if (includes != null && includes.length > 0) { int nElementsChosen = includes.length; // remove duplicates CPElementGroup group = getSelectedGroup(); for (int i = 0; i < nElementsChosen; i++) { CPElement curr = in... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/6f341e4ccb7d93ec563ced01847760ba22498b8a/CPathIncludeSymbolEntryPage.java/clean/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/dialogs/cpaths/CPathIncludeSymbolEntryPage.java | [
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public GroupMember(boolean usePullMode,int size) { setStateSize(size*MEGABYTE); setUsePullMode(usePullMode); | public GroupMember(boolean pullMode,boolean dispMode,int size) { setStateSize(size*MEGABYTE); setUsePullMode(pullMode); setUseDispatcher(dispMode); | public GroupMember(boolean usePullMode,int size) { setStateSize(size*MEGABYTE); //1GB setUsePullMode(usePullMode); } | 48949 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48949/4c13201c940a33777143fcefb225d03101c360fc/StreamingStateTransferTest.java/clean/tests/junit/org/jgroups/tests/StreamingStateTransferTest.java | [
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public static void main(String[] args) { | public static void main(String[] args) throws IOException { | public static void main(String[] args) { int port = Integer.parseInt(args[0]); System.out.println("Port number: "+port); Logger.setupStdoutLogging(Logger.MINOR, ""); Yarrow yarrow = new Yarrow(); Node n = new Node(port, yarrow); n.start(new StaticSwapRequestInterval(2000));... | 51738 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51738/27f407d086a1dbf43da0232680fb0f61503732d4/Node.java/buggy/src/freenet/node/Node.java | [
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Constraint c = (Constraint)this.appliedConstraints.get( SIZE_CONSTRAINT ); if(size == null) { this.appliedConstraints.remove( SIZE_CONSTRAINT ); } else { if(c != null) { c.setParameter(size); } else { c = new SizeConstraint(); c.setOwningClass(this.owningClass); c.setPropertyName(this.propertyName); c.setParameter(size... | Constraint c = (Constraint)this.appliedConstraints.get( SIZE_CONSTRAINT ); if(size == null) { this.appliedConstraints.remove( SIZE_CONSTRAINT ); } else { if(c != null) { c.setParameter(size); } else { c = new SizeConstraint(); c.setOwningClass(this.owningClass); c.setPropertyName(this.propertyName); c.setParameter(size... | public void setSize(Range size) { Constraint c = (Constraint)this.appliedConstraints.get( SIZE_CONSTRAINT ); if(size == null) { this.appliedConstraints.remove( SIZE_CONSTRAINT ); } else { if(c != null) { c.setParameter(size); } else { c = new SizeConstraint(); c.setOwningClass(this.owningClass)... | 53275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53275/975905c7e8c55e5fe91c94dc583c4269318ca341/ConstrainedProperty.java/clean/src/commons/org/codehaus/groovy/grails/validation/ConstrainedProperty.java | [
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if (be.getName().startsWith("META-INF/")) | if (be.getName().startsWith(META_INF)) | public BundleEntry getEntry(String path) { BundleEntry be = bundleFile.getEntry(path); if (be == null) { if (digests4entries != null && digests4entries.get(path) == null) return null; throw new RuntimeException("A file has been removed from the bundle: " + getBaseFile().toString() + " : " + path); //$NON-NLS-... | 2516 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2516/29707bf71c393f94fea8a97792cd26c6ce46572a/SignedBundleFile.java/clean/bundles/org.eclipse.osgi/jarverifier/org/eclipse/osgi/internal/verifier/SignedBundleFile.java | [
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0, 180, 0, 182, 0, 0, 0, 0, 0, 0, 0, 0, 176, 0, 184, 0, 175, 0, 174, 177, | 0, 180, 0, 182, 176, 0, 184, 0, 0, 0, 0, 0, 0, 0, 0, 0, 175, 0, 174, 177, | private static final short[] yyTable4() { return new short[] { 0, 0, 0, 19, 20, 21, 22, 23, 24, 25, 0, 0, 26, 0, 0, 0, 0, 0, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 0, 41, 42, 0... | 46217 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46217/f5c9a1ebd775712f2dc086acfce1a14a123ec632/YyTables.java/buggy/src/org/jruby/parser/YyTables.java | [
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FileInputStream stream = null; | InputStream stream = null; | private byte[] loadClassBytes(String name) throws ClassNotFoundException { FileInputStream stream = null; try { String fileName = name.replaceAll("\\.", "/"); fileName += ".class"; File file = new File("build/classes/test", fileName); ... | 52337 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52337/5824da07523b18e569515e71bd0efab31291d7ec/TestHelper.java/clean/test/org/jruby/test/TestHelper.java | [
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UMOEndpointURI url = new MuleEndpointURI("jnp: | UMOEndpointURI url = new MuleEndpointURI( "jnp: | public void testQueryParams2() throws Exception { UMOEndpointURI url = new MuleEndpointURI("jnp://localhost:1099/BeeShirtsjnpServer?method=testMethod&endpointName=jnpProvider&blankParam="); assertEquals("jnp", url.getScheme()); assertEquals("jnp://localhost:1099", url.getAddress()); a... | 28323 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28323/f22bcd2035487efd91d326568c482912217bbe55/JnpEndpointTestCase.java/buggy/transports/rmi/src/test/java/org/mule/providers/jnp/JnpEndpointTestCase.java | [
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return (modes & RDWR) != 0 || (modes & WRONLY) != 0 || (modes & CREAT) != 0; | return isWritable(); | public boolean isWriteable() { return (modes & RDWR) != 0 || (modes & WRONLY) != 0 || (modes & CREAT) != 0; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOModes.java/buggy/src/org/jruby/util/IOModes.java | [
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iter = timezones.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry)iter.next(); if (((TimeZone)entry.getValue()).getRawOffset() == rawOffset) ids[count++] = (String)entry.getKey(); | iter = timezones().entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry) iter.next(); if (((TimeZone) entry.getValue()).getRawOffset() == rawOffset) ids[count++] = (String) entry.getKey(); | public static String[] getAvailableIDs(int rawOffset) { int count = 0; Iterator iter = timezones.entrySet().iterator(); while (iter.hasNext()) { // Don't iterate the values, since we want to count // doubled values (aliases) Map.Entry entry = (Map.Entry)iter.next(); if (((TimeZone)entry.getValue()).getRawO... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/16fc961d6a1c0f937611cc07e3cd784246a0a769/TimeZone.java/buggy/core/src/classpath/java/java/util/TimeZone.java | [
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public void casualtyNotification(String step, DiceRoll dice, PlayerID player, Collection killed, Collection damaged, Map dependents) | public void casualtyNotification(GUID battleID, String step, DiceRoll dice, PlayerID player, Collection killed, Collection damaged, Map dependents) | public void casualtyNotification(String step, DiceRoll dice, PlayerID player, Collection killed, Collection damaged, Map dependents) { m_ui.getBattlePanel().casualtyNotification(step,dice, player, killed, damaged, dependents); } | 8909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8909/3145f57acb1e4d7dae265b6f1c6fb5ab17a2fe02/TripleaDisplay.java/buggy/triplea/src/games/strategy/triplea/ui/display/TripleaDisplay.java | [
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.get("degreeCurricularPlanID") + "°reeModuleID=" + this.degreeModule.getIdInternal(), "setCurricularRule"); | .get("degreeCurricularPlanID") + "°reeModuleID=" + this.degreeModule.getIdInternal() + organizeBy, "setCurricularRule"); | private void encodeCourseGroupOptions() throws IOException { writer.startElement("th", this); writer.writeAttribute("class", "aright", null); writer.writeAttribute("colspan", 3, null); if (!this.showRules) { encodeLink("createCurricularCourse.faces?degreeCurricularPlanID=" + t... | 2645 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2645/af4175c80021bbe7d6bff77a7dc46fab2dc3e798/UICourseGroup.java/clean/src/net/sourceforge/fenixedu/presentationTier/jsf/components/degreeStructure/UICourseGroup.java | [
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eNotify(new ENotificationImpl(this, Notification.UNSET, LayoutPackage.BLOCK__COLUMN, oldColumn, COLUMN_EDEFAULT, oldColumnESet)); | eNotify(new ENotificationImpl(this, Notification.UNSET, LayoutPackage.BLOCK__COLUMN, oldColumn, COLUMN_EDEFAULT, oldColumnESet)); | public void unsetColumn() { int oldColumn = column; boolean oldColumnESet = columnESet; column = COLUMN_EDEFAULT; columnESet = false; if (eNotificationRequired()) eNotify(new ENotificationImpl(this, Notification.UNSET, LayoutPackage.BLOCK__COLUMN, oldColumn, COLUMN_E... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/e5c78f0e8317166d02fa384e14c3dd7aa1796f2c/BlockImpl.java/clean/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/layout/impl/BlockImpl.java | [
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sTmp = serviceprovider.getValue(sTmp); if (sTmp == null || "".equals(sTmp)) { sTmp = "Key could not be found in Properties file...or properties file not present."; } | sTmp = "Key could not be found in Properties file...or properties file not present."; | public String getValue(String str) { String sTmp = ""; sTmp = getKey(str); if ("".equals(sTmp)) { int iSeparator = str.indexOf(SEPARATOR) + SEPARATOR.length(); if (iSeparator == (-1 + SEPARATOR.length())) { iSeparator = 0; } ... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/328c8495576ec950cc922a812ac021ce2d28f134/ExternalizedTextEditorComposite.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/composites/ExternalizedTextEditorComposite.java | [
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mockPluginManager.expects(once()).method("getPluginModule").will(returnValue((JiraSoapService) mock.proxy())); | protected void setUp() throws Exception { super.setUp(); Mock mockPluginManager = new Mock(PluginManager.class); mockPluginManager.expects(once()).method("getPluginModule").will(returnValue((JiraSoapService) mock.proxy())); mock = new Mock(JiraSoapService.class); service = new ... | 21772 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/21772/b2876cf84888caa7958e8c5e9648338fb2beec50/TestJiraXmlRpcService.java/clean/src/test/java/com/atlassian/jira/rpc/xmlrpc/TestJiraXmlRpcService.java | [
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if(log.isInfoEnabled()) log.info("sending handleJoin(" + mbr + ") to " + coord); | if(log.isDebugEnabled()) log.debug("sending handleJoin(" + mbr + ") to " + coord); | public void join(Address mbr) { Address coord=null; JoinRsp rsp=null; Digest tmp_digest=null; join_promise.reset(); while(true) { findInitialMembers(); if(log.isDebugEnabled()) log.debug("initial_mbrs are " + initial_mbrs); if(initial_mbrs.size() =... | 51463 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51463/85b7a7c351493f88f1d6a3045b9cbd0b817f95cd/ClientGmsImpl.java/buggy/src/org/jgroups/protocols/pbcast/ClientGmsImpl.java | [
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if ((tree.isVisible(path) && tree.isExpanded(path)) || treeModel.isLeaf(next)) | if ((tree.isVisible(path) && tree.isExpanded(path)) || treeModel.isLeaf(next)) | void updateCurrentVisiblePath() { if (treeModel == null) return; Object next = treeModel.getRoot(); Rectangle bounds = getCellBounds(0, 0, next); boolean rootVisible = isRootVisible(); // If root is not a valid size to be visible, or is // not visible and the tree is expanded, then the nex... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/badba23052f905d992da7c32124c28f4339931fc/BasicTreeUI.java/buggy/core/src/classpath/javax/javax/swing/plaf/basic/BasicTreeUI.java | [
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new FilterCalculator( populator, filterByRow ).applyFilters( ); | new FilterCalculator( populator, filterByRow, session ).applyFilters( ); | static void applyFilters( ResultSetPopulator populator, FilterByRow filterByRow ) throws DataException { new FilterCalculator( populator, filterByRow ).applyFilters( ); } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/0049044a5bef6d7cacb43d07aaac96e021a89ed5/FilterCalculator.java/clean/data/org.eclipse.birt.data/src/org/eclipse/birt/data/engine/executor/transform/pass/FilterCalculator.java | [
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openTaskEditor.run(); | private void hookOpenAction() { getViewer().addDoubleClickListener(new IDoubleClickListener() { public void doubleClick(DoubleClickEvent event) { openTaskEditor.run(); if (TasksUiPlugin.getDefault().getPreferenceStore().getBoolean( TaskListPreferenceConstants.ACTIVATE_ON_OPEN)) { activateAction.run()... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/d460adfe82e4aba9cf5afcb503903ea75bf610dc/TaskListView.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/internal/tasks/ui/views/TaskListView.java | [
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protected String readLine() { | protected String readLine() throws UnsupportedEncodingException { | protected String readLine() { byte[] bufferByte = new byte[bufferSize]; int bytesRead; try { bytesRead = inputStream.readLine(bufferByte, 0, bufferSize); } catch (IOEx... | 48068 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48068/3f4b77509f0473e154255122a9cbed2ffb1a2bc5/MultipartIterator.java/clean/src/share/org/apache/struts/upload/MultipartIterator.java | [
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if (qualifiedNameReference.otherBindings == null || (otherBindingLength - index - 1) < 0) { | if (qualifiedNameReference.otherBindings == null || (index - 2) < 0) { | synchronized IBinding resolveName(Name name) { org.eclipse.jdt.internal.compiler.ast.ASTNode node = (org.eclipse.jdt.internal.compiler.ast.ASTNode) this.newAstToOldAst.get(name); int index = name.index; if (node instanceof QualifiedNameReference) { QualifiedNameReference qualifiedNameReference = (QualifiedNameRef... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/dcf93fb34d4ce9325841c9302bc217b02f49501a/DefaultBindingResolver.java/clean/org.eclipse.jdt.core/dom/org/eclipse/jdt/core/dom/DefaultBindingResolver.java | [
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public NODE newVCall(Object m) { return newDefaultNode(NODE.NODE_VCALL, null, m, null); | public NODE newVCall(RubyId mid) { return newDefaultNode(NODE.NODE_VCALL, null, mid, null); | public NODE newVCall(Object m) { return newDefaultNode(NODE.NODE_VCALL, null, m, null); } | 49476 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49476/a6fb3288b71aaedfe3a7b5e8d1e561e0bc249dc6/NodeFactory.java/buggy/org/jruby/interpreter/nodes/NodeFactory.java | [
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Chunk c = trickle(); | try { inFile.position(outstanding); } catch (IOException exn) { logger.warn("could not change file pointer", exn); } outstanding = 0; | private Chunk bufferOrTrickle(Chunk chunk) throws TokenException { ByteBuffer buf = chunk.getData(); try { for (ByteBuffer bb = buf.duplicate(); bb.hasRemaining(); outFile.write(bb)); } catch (IOException e) { logger.warn("Unable to write to buffer file: " + e); ... | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/1c63635b818b17d4999b985e6ecc16307af11a38/VirusHttpHandler.java/clean/tran/virus/main/com/metavize/tran/virus/VirusHttpHandler.java | [
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