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("msg.instanceof.bad.prototype", names[0], instance);
("msg.instanceof.bad.prototype", functionName, instance);
public boolean hasInstance(Scriptable instance) { Object protoProp = ScriptableObject.getProperty(this, "prototype"); if (protoProp instanceof Scriptable && protoProp != Undefined.instance) { return ScriptRuntime.jsDelegatesTo(instance, (Scriptable)protoProp); } throw NativeGlobal.typeError1 ("msg.instanceof.bad.prototype", names[0], instance); }
19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/e53045755f5170abf79488c129f3ab6756b813e1/NativeFunction.java/clean/src/org/mozilla/javascript/NativeFunction.java
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}
}
public void writeTaskLog(CmsRequestContext context, int taskid, String comment) throws CmsException { CmsDbContext dbc = m_dbContextFactory.getDbContext(context); try { m_driverManager.writeTaskLog(dbc, taskid, comment); } catch (Exception e) { dbc.report(null, null, e); } finally { dbc.clear(); } }
51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/a7ffa3c192d7068f584b0a3a844b88bdb2d3145a/CmsSecurityManager.java/buggy/src/org/opencms/db/CmsSecurityManager.java
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m_ClassIndex = train.classIndex();
public void buildClassifier(Instances train) throws Exception { if (train.classAttribute().type() != Attribute.NOMINAL) { throw new Exception("Class attribute must be nominal."); } if (train.classAttribute().numValues() != 2) { throw new Exception("Only 2-class problems allowed."); } if (train.checkForStringAttributes()) { throw new Exception("Can't handle string attributes!"); } m_ClassIndex = train.classIndex(); train = new Instances(train); train.deleteWithMissingClass(); if (train.numInstances() == 0) { throw new Exception("No train instances without missing class value!"); } m_ReplaceMissingValues = new ReplaceMissingValuesFilter(); m_ReplaceMissingValues.inputFormat(train); train = Filter.useFilter(train, m_ReplaceMissingValues); m_NominalToBinary = new NominalToBinaryFilter(); m_NominalToBinary.inputFormat(train); train = Filter.useFilter(train, m_NominalToBinary); int nR = m_NumPredictors = train.numAttributes() - 1; int nC = train.numInstances(); double [][] X = new double [nC][nR + 1]; // Data values double [] Y = new double [nC]; // Class values double [] xMean= new double [nR + 1]; // Attribute means double [] xSD = new double [nR + 1]; // Attribute stddev's double sY0 = 0; // Number of class 0 double sY1 = 0; // Number of class 1 if (m_Debug) { System.out.println("Extracting data..."); } for (int i = 0; i < X.length; i++) { Instance current = train.instance(i); X[i][0] = 1; int j = 1; for (int k = 0; k <= nR; k++) { if (k != m_ClassIndex) { double x = current.value(k); if ((i == j) && (i <= nR)) { x += 1e-8; } X[i][j] = x; xMean[j] = xMean[j] + x; xSD[j] = xSD[j] + x*x; j++; } } Y[i] = current.classValue(); if (Y[i] != 0) { Y[i] = 1; } if (Y[i] == 0) { sY0 = sY0 + 1; } else { sY1 = sY1 + 1; } } xMean[0] = 0; xSD[0] = 1; for (int j = 1; j <= nR; j++) { xMean[j] = xMean[j] / nC; xSD[j] = xSD[j] / nC; xSD[j] = Math.sqrt(Math.abs( xSD[j] - xMean[j] * xMean[j])); } if (m_Debug) { // Output stats about input data System.out.println("Descriptives..."); System.out.println("" + sY0 + " cases have Y=0; " + sY1 + " cases have Y=1."); System.out.println("\n Variable Avg SD "); for (int j = 1; j <= nR; j++) System.out.println(Utils.doubleToString(j,8,4) + Utils.doubleToString(xMean[j], 10, 4) + Utils.doubleToString(xSD[j], 10, 4) ); } // Normalise input data and remove ignored attributes for (int i = 0; i < nC; i++) { for (int j = 0; j <= nR; j++) { if (xSD[j] != 0) { X[i][j] = (X[i][j] - xMean[j]) / xSD[j]; } } } if (m_Debug) { System.out.println("\nIteration History..." ); } m_Par = new double [nR + 1]; // Coefficients double LLp = 2e+10; // Log-likelihood on previous iteration m_LL = 1e+10; // Log-likelihood of current iteration m_LLn = 0; // Log-likelihood of null hypothesis double [] deltas = new double [nR + 1]; Matrix jacobian = new Matrix(nR + 1, nR + 1); // Set up parameters for null model m_Par[0] = Math.log((sY1+1) / (sY0+1)); for (int j = 1; j < m_Par.length; j++) { m_Par[j] = 0; } // While the log-likelihood is changing (i.e. no maxima found) while(Math.abs(LLp-m_LL) > 0.00001) { LLp = m_LL; m_LL = calculateLogLikelihood(X, Y, jacobian, deltas); if (LLp == 1e+10) { m_LLn = m_LL; } if (m_Debug) { System.out.println("-2 Log Likelihood = " + Utils.doubleToString(m_LL, 10, 5) + ((m_LLn == m_LL) ? " (Null Model)" : "")); } jacobian.lubksb(jacobian.ludcmp(), deltas); // Adjust the coefficients for (int j = 0; j < deltas.length; j++) { m_Par[j] += deltas[j]; } } if (m_Debug) { System.out.println(" (Converged)"); } // Convert coefficients back to non-normalized attribute units for(int j = 1; j <= nR; j++) { if (xSD[j] != 0) { m_Par[j] = m_Par[j] / xSD[j]; m_Par[0] = m_Par[0] - m_Par[j] * xMean[j]; } } }
6866 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6866/8542ff1ed2f4efca6f2bcefb7fdef18ad20d35a5/Logistic.java/clean/classifiers/Logistic.java
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ZimbraSoapContext lc = getZimbraContext(context);
ZimbraSoapContext lc = getZimbraSoapContext(context);
public Element handle(Element request, Map context) throws ServiceException { ZimbraSoapContext lc = getZimbraContext(context); // FIXME: need to check that mailbox exists Mailbox mbox = getRequestedMailbox(lc); List tags = mbox.getTagList(lc.getOperationContext()); Element response = lc.createElement(MailService.GET_TAG_RESPONSE); if (tags != null) { for (Iterator it = tags.iterator(); it.hasNext(); ) { Tag tag = (Tag) it.next(); if (tag == null || tag instanceof Flag) continue; ToXML.encodeTag(response, lc, tag); } } return response; }
6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/73c7a43f58826ebd459515a85e8460518f31e6cc/GetTag.java/clean/ZimbraServer/src/java/com/zimbra/cs/service/mail/GetTag.java
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}
} if (!movedALegion) { debugln("Ack! forced to move someone"); ArrayList allmoves = new ArrayList(); Iterator friendlyLegionIt = legions.iterator(); while (friendlyLegionIt.hasNext()) { Legion friendlyLegion = (Legion) friendlyLegionIt.next(); ArrayList moves = (ArrayList) moveMap.get(friendlyLegion); allmoves.addAll(moves); } Collections.sort(allmoves, new Comparator() { public int compare(Object o1, Object o2) { MoveInfo m1 = (MoveInfo) o1; MoveInfo m2 = (MoveInfo) o2; return m1.difference - m2.difference; } }); Iterator moveIt = allmoves.iterator(); while (moveIt.hasNext() && player.legionsMoved() == 0 && player.countMobileLegions() > 0) { MoveInfo move = (MoveInfo) moveIt.next(); if (move.hex == null) continue; debugln("forced to move " + move.legion + " to " + move.hex + " taking penalty " + move.difference + " in order to handle illegal legion " + move.legion); game.actOnLegion(move.legion); game.actOnHex(move.hex); movedALegion = true; } }
public void simpleMove (Game game) { Player player = game.getActivePlayer(); /** cache all places enemies can move to, for use in risk analysis */ HashMap[] enemyAttackMap = buildEnemyAttackMap(game, player); // consider mulligans // TODO: this is really stupid. do something smart here. // idea: hard code an "opening book" of turn 1 moves based // on our splits and die rolls. if (player.getMulligansLeft() > 0 && player.getMovementRoll() == 2) { player.takeMulligan(); player.rollMovement(); } // A mapping from Legion to ArrayList of MoveInfo objects, // listing all moves that we've evaluated. We use this if // we're forced to move. HashMap moveMap = new HashMap(); // true if we moved at least one legion boolean movedALegion = false; List legions = player.getLegions(); Iterator it = legions.iterator(); while (it.hasNext()) { Legion legion = (Legion) it.next(); // compute the value of sitting still ArrayList moveList = new ArrayList(); moveMap.put(legion,moveList); MoveInfo sitStillMove = new MoveInfo ( legion, null, evaluateMove(game, legion,legion.getCurrentHex(), false, enemyAttackMap), 0); moveList.add(sitStillMove); // find the best move (1-ply search) MasterHex bestHex = null; int bestValue = Integer.MIN_VALUE; Set set = game.listMoves(legion, true); for (Iterator moveIterator = set.iterator(); moveIterator.hasNext();) { final String hexLabel = (String) moveIterator.next(); final MasterHex hex = game.board.getHexFromLabel(hexLabel); final int value = evaluateMove(game, legion,hex,true,enemyAttackMap); if (value > bestValue || bestHex == null) { bestValue = value; bestHex = hex; } MoveInfo move = new MoveInfo(legion, hex, value, value - sitStillMove.value); moveList.add(move); } // if we found a move that's better than sitting still, move if (bestValue > sitStillMove.value) { movedALegion = true; game.actOnLegion(legion); game.actOnHex(bestHex); } } // make sure we move splits (when forced) it = legions.iterator(); while (it.hasNext()) { Legion legion = (Legion)it.next(); MasterHex hex = legion.getCurrentHex(); List friendlyLegions = hex.getFriendlyLegions(player); outer: while (friendlyLegions.size() > 1 && game.countConventionalMoves(legion) > 0) { // pick the legion in this hex whose best move has the // least difference with its sitStillValue, and force // it to move. debugln("Ack! forced to move a split group"); // first, concatenate all the moves for all the // legions that are here, and sort them by their // difference from sitting still ArrayList allmoves = new ArrayList(); Iterator friendlyLegionIt = friendlyLegions.iterator(); while (friendlyLegionIt.hasNext()) { Legion friendlyLegion = (Legion) friendlyLegionIt.next(); ArrayList moves = (ArrayList) moveMap.get(friendlyLegion); allmoves.addAll(moves); } Collections.sort(allmoves, new Comparator() { public int compare(Object o1, Object o2) { MoveInfo m1 = (MoveInfo) o1; MoveInfo m2 = (MoveInfo) o2; return m1.difference - m2.difference; } }); // now, one at a time, try applying moves until we // have handled our split problem. Iterator moveIt = allmoves.iterator(); while (moveIt.hasNext()) { MoveInfo move = (MoveInfo) moveIt.next(); if (move.hex == null) continue; //skip the sitStill moves debugln("forced to move split legion " + move.legion + " to " + move.hex + " taking penalty " + move.difference + " in order to handle illegal legion " + legion); game.actOnLegion(move.legion); game.actOnHex(move.hex); movedALegion = true; // check again if this legion is ok; if so, break friendlyLegions = hex.getFriendlyLegions(player); if (friendlyLegions.size() > 1 && game.countConventionalMoves(legion) > 0) continue; else break outer; // legion is all set } } } // make sure we move at least one legion if (!movedALegion) { debugln("Ack! forced to move someone"); // pick the legion whose best move has the least // difference with its sitStillValue, and force it to // move. // first, concatenate all the moves for all the // legions that are here, and sort them by their // difference from sitting still ArrayList allmoves = new ArrayList(); Iterator friendlyLegionIt = legions.iterator(); while (friendlyLegionIt.hasNext()) { Legion friendlyLegion = (Legion) friendlyLegionIt.next(); ArrayList moves = (ArrayList) moveMap.get(friendlyLegion); allmoves.addAll(moves); } Collections.sort(allmoves, new Comparator() { public int compare(Object o1, Object o2) { MoveInfo m1 = (MoveInfo) o1; MoveInfo m2 = (MoveInfo) o2; return m1.difference - m2.difference; } }); // now, one at a time, try applying moves until we // have moved a legion Iterator moveIt = allmoves.iterator(); while (moveIt.hasNext() && player.legionsMoved() == 0 && player.countMobileLegions() > 0) { MoveInfo move = (MoveInfo) moveIt.next(); if (move.hex == null) continue; //skip the sitStill moves debugln("forced to move " + move.legion + " to " + move.hex + " taking penalty " + move.difference + " in order to handle illegal legion " + move.legion); game.actOnLegion(move.legion); game.actOnHex(move.hex); movedALegion = true; } } }
51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/db1dae80f332e8300e5d408cc3cdb3807d4ae58e/SimpleAI.java/clean/Colossus/SimpleAI.java
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return findSpecialTag(name,"attributeGroup",myFile.getDocument().getRootTag(),this, null);
return findSpecialTag(name,"attributeGroup",myTag,this, null);
public XmlTag findAttributeGroup(String name) { return findSpecialTag(name,"attributeGroup",myFile.getDocument().getRootTag(),this, null); }
12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/79006a6382a22245a92d617926dfdb7c7f9c6738/XmlNSDescriptorImpl.java/buggy/source/com/intellij/xml/impl/schema/XmlNSDescriptorImpl.java
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SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message);
SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message);
public static SVNEvent createLockEvent(SVNWCAccess source, String path, SVNEventAction action, SVNLock lock, String message) { SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message); event.setPath(path); return event; }
2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/28381179e464d7990498164d52693487f9dddb79/SVNEventFactory.java/buggy/javasvn/src/org/tmatesoft/svn/core/internal/wc/SVNEventFactory.java
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Atom ring1Atom1 = new Atom("C"); Atom ring1Atom2 = new Atom("C"); Atom ring1Atom3 = new Atom("C"); Atom ring2Atom1 = new Atom("C"); Atom ring2Atom2 = new Atom("C"); Atom ring2Atom3 = new Atom("C"); Bond ring1Bond1 = new Bond(ring1Atom1, ring1Atom2); Bond ring1Bond2 = new Bond(ring1Atom2, ring1Atom3); Bond ring1Bond3 = new Bond(ring1Atom3, ring1Atom1);
Atom ring1Atom1 = builder.newAtom("C"); Atom ring1Atom2 = builder.newAtom("C"); Atom ring1Atom3 = builder.newAtom("C"); Atom ring2Atom1 = builder.newAtom("C"); Atom ring2Atom2 = builder.newAtom("C"); Atom ring2Atom3 = builder.newAtom("C"); Bond ring1Bond1 = builder.newBond(ring1Atom1, ring1Atom2); Bond ring1Bond2 = builder.newBond(ring1Atom2, ring1Atom3); Bond ring1Bond3 = builder.newBond(ring1Atom3, ring1Atom1);
public void testIsSameRing_Atom_Atom() { RingSet ringset = new RingSet(); Atom ring1Atom1 = new Atom("C"); // rather artificial molecule Atom ring1Atom2 = new Atom("C"); Atom ring1Atom3 = new Atom("C"); Atom ring2Atom1 = new Atom("C"); Atom ring2Atom2 = new Atom("C"); Atom ring2Atom3 = new Atom("C"); Bond ring1Bond1 = new Bond(ring1Atom1, ring1Atom2); Bond ring1Bond2 = new Bond(ring1Atom2, ring1Atom3); Bond ring1Bond3 = new Bond(ring1Atom3, ring1Atom1); Bond ring2Bond1 = new Bond(ring2Atom1, ring2Atom2); Bond ring2Bond2 = new Bond(ring2Atom2, ring2Atom3); Bond ring2Bond3 = new Bond(ring2Atom3, ring2Atom1); Ring ring1 = new Ring(); ring1.addAtom(ring1Atom1); ring1.addAtom(ring1Atom2); ring1.addAtom(ring1Atom3); ring1.addBond(ring1Bond1); ring1.addBond(ring1Bond2); ring1.addBond(ring1Bond3); Ring ring2 = new Ring(); ring2.addAtom(ring2Atom1); ring2.addAtom(ring2Atom2); ring2.addAtom(ring2Atom3); ring2.addBond(ring2Bond1); ring2.addBond(ring2Bond2); ring2.addBond(ring2Bond3); ringset.add(ring1); ringset.add(ring2); assertTrue(ringset.isSameRing(ring1Atom1, ring1Atom3)); assertFalse(ringset.isSameRing(ring1Atom1, ring2Atom3)); }
45254 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45254/67261c8143759a6ee4feb79dc1687d6dcfa25f40/RingSetTest.java/buggy/src/org/openscience/cdk/test/RingSetTest.java
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GBeanMBean resourceAdapterGBean = setUpDynamicGBean(resourceAdapterInfoFactory, resourceadapter.getConfigPropertyArray(), geronimoResourceAdapter.getResourceadapterInstance().getConfigPropertySettingArray());
GBeanMBean resourceAdapterGBean = setUpDynamicGBean(resourceAdapterInfoFactory, resourceadapter.getConfigPropertyArray(), geronimoResourceAdapter.getResourceadapterInstance().getConfigPropertySettingArray(), cl);
void addConnectorGBeans(DeploymentContext context, XmlObject genericConnectorDocument, GerConnectorType geronimoConnector, ClassLoader cl) throws DeploymentException { //addGBeans called from here so it is included in tests. addGBeans(geronimoConnector, cl, context); ConnectorType connector = ((ConnectorDocument) genericConnectorDocument).getConnector(); ResourceadapterType resourceadapter = connector.getResourceadapter(); GerResourceadapterType geronimoResourceAdapter = geronimoConnector.getResourceadapter(); //ResourceAdapter setup FullyQualifiedClassType resourceadapterClass = resourceadapter.getResourceadapterClass(); ObjectName resourceAdapterObjectName = null; if (resourceadapterClass != null) { String resourceAdapterClassName = resourceadapterClass.getStringValue(); resourceAdapterObjectName = null; GBeanInfoFactory resourceAdapterInfoFactory = new GBeanInfoFactory(ResourceAdapterWrapper.class, ResourceAdapterWrapper.getGBeanInfo()); GBeanMBean resourceAdapterGBean = setUpDynamicGBean(resourceAdapterInfoFactory, resourceadapter.getConfigPropertyArray(), geronimoResourceAdapter.getResourceadapterInstance().getConfigPropertySettingArray()); try { resourceAdapterGBean.setAttribute("ResourceAdapterClass", cl.loadClass(resourceAdapterClassName)); } catch (Exception e) { throw new DeploymentException(e); } ObjectName bootstrapContextObjectName = null; try { bootstrapContextObjectName = ObjectName.getInstance(geronimoResourceAdapter.getResourceadapterInstance().getBootstrapcontextName().getStringValue()); } catch (MalformedObjectNameException e) { throw new DeploymentException("Could not create object name for bootstrap context", e); } resourceAdapterGBean.setReferencePatterns("BootstrapContext", Collections.singleton(bootstrapContextObjectName)); try { resourceAdapterObjectName = ObjectName.getInstance(BASE_RESOURCE_ADAPTER_NAME + geronimoResourceAdapter.getResourceadapterInstance().getResourceadapterName() + ",configID=" + context.getConfigID()); } catch (MalformedObjectNameException e) { throw new DeploymentException("Could not construct resource adapter object name", e); } context.addGBean(resourceAdapterObjectName, resourceAdapterGBean); } Map connectionDefinitions = new HashMap(); for (int j = 0; j < resourceadapter.getOutboundResourceadapter().getConnectionDefinitionArray().length; j++) { ConnectionDefinitionType connectionDefinition = resourceadapter.getOutboundResourceadapter().getConnectionDefinitionArray(j); connectionDefinitions.put(connectionDefinition.getConnectionfactoryInterface().getStringValue(), connectionDefinition); } //ManagedConnectionFactory setup for (int i = 0; i < geronimoResourceAdapter.getOutboundResourceadapter().getConnectionDefinitionArray().length; i++) { GerConnectionDefinitionType geronimoConnectionDefinition = geronimoResourceAdapter.getOutboundResourceadapter().getConnectionDefinitionArray(i); assert geronimoConnectionDefinition != null: "Null GeronimoConnectionDefinition"; String connectionFactoryInterfaceName = geronimoConnectionDefinition.getConnectionfactoryInterface().getStringValue(); ConnectionDefinitionType connectionDefinition = (ConnectionDefinitionType) connectionDefinitions.get(connectionFactoryInterfaceName); if (connectionDefinition == null) { throw new DeploymentException("No connection definition for ConnectionFactory class: " + connectionFactoryInterfaceName); } for (int j = 0; j < geronimoConnectionDefinition.getConnectiondefinitionInstanceArray().length; j++) { GerConnectiondefinitionInstanceType connectionfactoryInstance = geronimoConnectionDefinition.getConnectiondefinitionInstanceArray()[j]; //ConnectionManager ObjectName connectionManagerObjectName = configureConnectionManager(connectionfactoryInstance, context); //ManagedConnectionFactory ObjectName managedConnectionFactoryObjectName = null; try { managedConnectionFactoryObjectName = ObjectName.getInstance(JMXReferenceFactory.BASE_MANAGED_CONNECTION_FACTORY_NAME + connectionfactoryInstance.getName()); } catch (MalformedObjectNameException e) { throw new DeploymentException("Could not construct ManagedConnectionFactory object name", e); } GBeanInfoFactory managedConnectionFactoryInfoFactory = new GBeanInfoFactory(ManagedConnectionFactoryWrapper.class, ManagedConnectionFactoryWrapper.getGBeanInfo()); GBeanMBean managedConnectionFactoryGBean = setUpDynamicGBean(managedConnectionFactoryInfoFactory, connectionDefinition.getConfigPropertyArray(), connectionfactoryInstance.getConfigPropertySettingArray()); try { managedConnectionFactoryGBean.setAttribute("ManagedConnectionFactoryClass", cl.loadClass(connectionDefinition.getManagedconnectionfactoryClass().getStringValue())); managedConnectionFactoryGBean.setAttribute("ConnectionFactoryInterface", cl.loadClass(connectionDefinition.getConnectionfactoryInterface().getStringValue())); managedConnectionFactoryGBean.setAttribute("ConnectionFactoryImplClass", cl.loadClass(connectionDefinition.getConnectionfactoryImplClass().getStringValue())); managedConnectionFactoryGBean.setAttribute("ConnectionInterface", cl.loadClass(connectionDefinition.getConnectionInterface().getStringValue())); managedConnectionFactoryGBean.setAttribute("ConnectionImplClass", cl.loadClass(connectionDefinition.getConnectionImplClass().getStringValue())); managedConnectionFactoryGBean.setAttribute("GlobalJNDIName", connectionfactoryInstance.getGlobalJndiName()); if (resourceAdapterObjectName != null) { managedConnectionFactoryGBean.setReferencePatterns("ResourceAdapterWrapper", Collections.singleton(resourceAdapterObjectName)); } managedConnectionFactoryGBean.setReferencePatterns("ConnectionManagerFactory", Collections.singleton(connectionManagerObjectName)); if (connectionfactoryInstance.getCredentialInterface() != null && PasswordCredential.class.getName().equals(connectionfactoryInstance.getCredentialInterface().getStringValue())) { GBeanMBean realmGBean = new GBeanMBean(PasswordCredentialRealm.getGBeanInfo()); realmGBean.setAttribute("RealmName", BASE_PASSWORD_CREDENTIAL_LOGIN_MODULE_NAME + connectionfactoryInstance.getName()); context.addGBean(ObjectName.getInstance(BASE_PASSWORD_CREDENTIAL_LOGIN_MODULE_NAME + connectionfactoryInstance.getName()), realmGBean); managedConnectionFactoryGBean.setReferencePatterns("ManagedConnectionFactoryListener", Collections.singleton(ObjectName.getInstance(BASE_PASSWORD_CREDENTIAL_LOGIN_MODULE_NAME + connectionfactoryInstance.getName()))); } managedConnectionFactoryGBean.setReferencePatterns("Kernel", Collections.singleton(Kernel.KERNEL)); managedConnectionFactoryGBean.setAttribute("SelfName", managedConnectionFactoryObjectName); } catch (Exception e) { throw new DeploymentException(e); } context.addGBean(managedConnectionFactoryObjectName, managedConnectionFactoryGBean); } } //admin objects Map adminObjectInterfaceMap = new HashMap(); for (int i = 0; i < resourceadapter.getAdminobjectArray().length; i++) { AdminobjectType adminobject = resourceadapter.getAdminobjectArray()[i]; adminObjectInterfaceMap.put(adminobject.getAdminobjectInterface().getStringValue(), adminobject); } for (int i = 0; i < geronimoResourceAdapter.getAdminobjectArray().length; i++) { GerAdminobjectType gerAdminObject = geronimoResourceAdapter.getAdminobjectArray()[i]; AdminobjectType adminobject = (AdminobjectType) adminObjectInterfaceMap.get(gerAdminObject.getAdminobjectInterface().getStringValue()); assert adminobject != null; for (int j = 0; j < gerAdminObject.getAdminobjectInstanceArray().length; j++) { GerAdminobjectInstanceType gerAdminobjectInstance = gerAdminObject.getAdminobjectInstanceArray()[j]; GBeanInfoFactory adminObjectInfoFactory = new GBeanInfoFactory(AdminObjectWrapper.class, AdminObjectWrapper.getGBeanInfo()); GBeanMBean adminObjectGBean = setUpDynamicGBean(adminObjectInfoFactory, adminobject.getConfigPropertyArray(), gerAdminobjectInstance.getConfigPropertySettingArray()); try { ObjectName adminObjectObjectName = ObjectName.getInstance(JMXReferenceFactory.BASE_ADMIN_OBJECT_NAME + gerAdminobjectInstance.getAdminobjectName()); adminObjectGBean.setAttribute("AdminObjectInterface", cl.loadClass(adminobject.getAdminobjectInterface().getStringValue())); adminObjectGBean.setAttribute("AdminObjectClass", cl.loadClass(adminobject.getAdminobjectClass().getStringValue())); adminObjectGBean.setReferencePatterns("Kernel", Collections.singleton(Kernel.KERNEL)); adminObjectGBean.setAttribute("SelfName", adminObjectObjectName); context.addGBean(adminObjectObjectName, adminObjectGBean); } catch (Exception e) { throw new DeploymentException("Could not construct AdminObject", e); } } } }
12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/b538224cda0d40aae152bf9c55cb390f70708134/RAR_1_5ConfigBuilder.java/buggy/modules/connector/src/java/org/apache/geronimo/connector/deployment/RAR_1_5ConfigBuilder.java
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} else if (id.startsWith("IDL:")) {
} else if (id.startsWith("IDL:")) {
static Class getClass(String id) { if (id.startsWith("RMI:")) { int endClass = id.indexOf(':', 4); if (endClass == -1) { throw new org.omg.CORBA.INV_IDENT(id); } String className = id.substring(4, endClass); if (className.equals("javax.rmi.CORBA.ClassDesc")) { return Class.class; } else { return loadClass(className); } } else if (id.equals("IDL:omg.org/CORBA/WStringValue:1.0")) { return java.lang.String.class; } else if (id.startsWith("IDL:omg.org/")) { int endClass = id.indexOf(':', 12); if (endClass == -1) { throw new org.omg.CORBA.INV_IDENT(id); } String className = "org.omg" + id.substring("IDL:omg.org".length(), endClass).replace('/', '.'); return loadClass(className); } else if (id.startsWith("IDL:")) { int endClass = id.indexOf(':', 4); if (endClass == -1) { throw new org.omg.CORBA.INV_IDENT(id); } String className = id.substring(4, endClass).replace('/', '.'); return loadClass(className); } else { throw new org.omg.CORBA.INV_IDENT(id); } }
12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/9d2c39c906c6955e17daf4ac239b85d4727ddc83/ValueType.java/buggy/modules/interop/src/java/org/apache/geronimo/interop/rmi/iiop/ValueType.java
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public void mBOOL() throws RecognitionException { int BOOL_StartIndex = input.index(); try { int type = BOOL; int start = getCharIndex(); int line = getLine(); int charPosition = getCharPositionInLine(); int channel = Token.DEFAULT_CHANNEL; if ( backtracking>0 && alreadyParsedRule(input, 50) ) { return ; } // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:952:17: ( ( 'true' | 'false' ) ) // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:952:17: ( 'true' | 'false' ) { // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:952:17: ( 'true' | 'false' ) int alt11=2; int LA11_0 = input.LA(1); if ( LA11_0=='t' ) { alt11=1; } else if ( LA11_0=='f' ) { alt11=2; } else { if (backtracking>0) {failed=true; return ;} NoViableAltException nvae = new NoViableAltException("952:17: ( \'true\' | \'false\' )", 11, 0, input); throw nvae; } switch (alt11) { case 1 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:952:18: 'true' { match("true"); if (failed) return ; } break; case 2 : // /Users/bob/checkouts/jbossrules/drools-compiler/src/main/resources/org/drools/lang/drl.g:952:25: 'false' { match("false"); if (failed) return ; } break; } } if ( token==null ) {emit(type,line,charPosition,channel,start,getCharIndex()-1);} } finally { if ( backtracking>0 ) { memoize(input, 50, BOOL_StartIndex); } } }
6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/2c627236020a6a6e3e349b38b1010bfe64567df7/RuleParserLexer.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParserLexer.java
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private Rectangle getBoundingBox() { // Our PS Header has internal page orientation mode, all sizes given in portrait Dimension pageSize = PageConstants.getSize(getProperty(PAGE_SIZE)); Insets margins = getPropertyInsets(PAGE_MARGINS); boolean isPortrait = getProperty(ORIENTATION).equals(PageConstants.PORTRAIT); // Available width and height. double awidth = (pageSize.width-margins.left-margins.right); double aheight = (pageSize.height-margins.top-margins.bottom); // Image width and height (adjusted for portrait or landscape) Dimension size = getSize(); double iwidth = (isPortrait ? size.width : size.height); double iheight = (isPortrait ? size.height : size.width); // Choose the minimum scale factor. double sf = Math.min(awidth/iwidth,aheight/iheight); if (!isProperty(FIT_TO_PAGE)) sf = Math.min(sf,1.); // Lower left corner. double x0 = awidth/2. + margins.left - sf*iwidth/2.; double y0 = aheight/2. + margins.bottom - sf*iheight/2.; // Upper right corner. double x1 = x0 + sf*iwidth; double y1 = y0 + sf*iheight; int llx = (int) x0; int lly = (int) y0; int urx = (int) Math.ceil(x1); int ury = (int) Math.ceil(y1); // Convert these back to integer values. return new Rectangle(llx, lly, urx-llx, ury-lly); }
57341 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57341/de061d5977b00047b242b52aea5bc47538b063c5/PSGraphics2D.java/clean/freehep-graphicsio-ps/src/main/java/org/freehep/graphicsio/ps/PSGraphics2D.java
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performDataTypeTest(TEST_NUMERIC_MODEL, new BigDecimal("210987654321"), new BigDecimal("-2"));
final String modelXml = "<?xml version='1.0' encoding='ISO-8859-1'?>\n"+ "<database name='roundtriptest'>\n"+ " <table name='roundtrip'>\n"+ " <column name='pk' type='INTEGER' primaryKey='true' required='true'/>\n"+ " <column name='avalue' type='NUMERIC' size='12'/>\n"+ " </table>\n"+ "</database>"; performDataTypeTest(modelXml, new BigDecimal("210987654321"), new BigDecimal("-2"));
public void testNumeric() { performDataTypeTest(TEST_NUMERIC_MODEL, new BigDecimal("210987654321"), new BigDecimal("-2")); }
1224 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1224/ac0082aeb19995adc414f46d5f9053e8ecea4193/TestDatatypes.java/buggy/src/test/org/apache/ddlutils/io/TestDatatypes.java
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String sessionId;
String sessionId = Long.toString(System.currentTimeMillis());
private String getNewBrowserSession(String browser, String startURL) { if (browser == null) throw new IllegalArgumentException("browser may not be null"); String sessionId; String results; BrowserLauncherFactory blf = new BrowserLauncherFactory(server); BrowserLauncher launcher = blf.getBrowserLauncher(browser); sessionId = Long.toString(System.currentTimeMillis()); launcher.launch(startURL + "/selenium-server/SeleneseRunner.html?sessionId=" + sessionId); launchers.put(sessionId, launcher); SeleneseQueue queue = getQueue(sessionId); queue.doCommand("setContext", sessionId, ""); results = sessionId; return results; }
4718 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4718/13b471c65563ed945c399b0a68932cb37a9c3135/SeleniumDriverResourceHandler.java/buggy/server/src/main/java/org/openqa/selenium/server/SeleniumDriverResourceHandler.java
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+ " makes unresolvable reference to " + ref + " : " + defined.size());
+ " makes unresolvable reference to '" + ref + "' : " + defined.contains(ref) );
public void visit(JavaClass obj) { compute(); ConstantPool cp = obj.getConstantPool(); Constant[] constants = cp.getConstantPool(); checkConstant: for (int i = 0; i < constants.length; i++) { Constant co = constants[i]; if (co instanceof ConstantDouble || co instanceof ConstantLong) i++; if (false && co instanceof ConstantClass) { String ref = getClassName(obj, i).replace('/','.'); if (!defined.contains(ref)) System.out.println(getClassName() + " makes unresolvable reference to " + ref + " : " + defined.size()); } else if (co instanceof ConstantCP) { ConstantCP co2 = (ConstantCP) co; String className = getClassName(obj, co2.getClassIndex()).replace('/','.'); ConstantNameAndType nt = (ConstantNameAndType) cp .getConstant(co2.getNameAndTypeIndex()); String ref = getMemberName(obj, className, nt.getNameIndex(), nt.getSignatureIndex()); if (className.equals(obj.getClassName()) || !defined.contains(className)) { continue checkConstant; } if (defined.contains(ref)) { continue checkConstant; } try { JavaClass target = Repository.lookupClass(className); while (true) { target = target.getSuperClass(); if (target == null || !defined.contains(target.getClassName())) break; String ref2 = getMemberName(obj, target.getClassName(), nt .getNameIndex(), nt.getSignatureIndex()); if (defined.contains(ref2)) { continue checkConstant; } } System.out.println(getClassName() + " makes unresolvable reference to " + ref + " : " + defined.size()); } catch (ClassNotFoundException e) { bugReporter.reportMissingClass(e); } } } }
10715 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10715/fbaf639330a33e6574463ee18d8c595bfec8195e/ResolveAllReferences.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/detect/ResolveAllReferences.java
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String getBackgroundColor();
String getBackgroundColor( );
String getBackgroundColor();
5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/418b538dedc46927b62e9d884dd3fc2419ed5e34/IScriptStyle.java/clean/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/api/script/instance/IScriptStyle.java
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return "pvtMsgDetail";
return SELECTED_MESSAGE_PG;
public String processPvtMsgDetail() { LOG.debug("processPvtMsgDetail()"); String msgId=getExternalParameterByKey("current_msg_detail"); setCurrentMsgUuid(msgId) ; //retrive the detail for this message with currentMessageId for (Iterator iter = decoratedPvtMsgs.iterator(); iter.hasNext();) { PrivateMessageDecoratedBean dMsg= (PrivateMessageDecoratedBean) iter.next(); if (dMsg.getMsg().getId().equals(new Long(msgId))) { this.setDetailMsg(dMsg); prtMsgManager.markMessageAsReadForUser(dMsg.getMsg()); PrivateMessage initPrivateMessage = prtMsgManager.initMessageWithAttachmentsAndRecipients(dMsg.getMsg()); this.setDetailMsg(new PrivateMessageDecoratedBean(initPrivateMessage)); List recLs= initPrivateMessage.getRecipients(); for (Iterator iterator = recLs.iterator(); iterator.hasNext();) { PrivateMessageRecipient element = (PrivateMessageRecipient) iterator.next(); if (element != null) { if((element.getRead().booleanValue()) || (element.getUserId().equals(getUserId())) ) { getDetailMsg().setHasRead(true) ; } } } //ADD the recipientText here this.getDetailMsg().getMsg().setRecipientsAsText(dMsg.getMsg().getRecipientsAsText()); } } this.deleteConfirm=false; //reset this as used for multiple action in same JSP //prev/next message if(decoratedPvtMsgs != null) { for(int i=0; i<decoratedPvtMsgs.size(); i++) { PrivateMessageDecoratedBean thisDmb = (PrivateMessageDecoratedBean)decoratedPvtMsgs.get(i); if(((PrivateMessageDecoratedBean)decoratedPvtMsgs.get(i)).getMsg().getId().toString().equals(msgId)) { detailMsg.setDepth(thisDmb.getDepth()); detailMsg.setHasNext(thisDmb.getHasNext()); detailMsg.setHasPre(thisDmb.getHasPre()); break; } } } //default setting for moveTo moveToTopic=selectedTopicId; return "pvtMsgDetail"; }
2021 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2021/31f059d4c004601241a992d38669d08dc47f709b/PrivateMessagesTool.java/buggy/msgcntr/messageforums-app/src/java/org/sakaiproject/tool/messageforums/PrivateMessagesTool.java
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IClasspathEntry entry= JavaCore.getClasspathVariable(name);
IClasspathEntry entry= JavaCore.getResolvedClasspathVariable(cpentry.getPath());
public String getText(Object element) { if (element instanceof CPListElement) { CPListElement cpentry= (CPListElement)element; IResource resource= cpentry.getResource(); switch (cpentry.getEntryKind()) { case IClasspathEntry.CPE_LIBRARY: { IPath path= cpentry.getPath(); if (cpentry.getResource() instanceof IFolder) { StringBuffer buf= new StringBuffer(path.toString()); buf.append(' '); buf.append(fClassLabel); if (!resource.exists()) { buf.append(' '); buf.append(fNewLabel); } return buf.toString(); } else { return path.lastSegment() + " - " + path.removeLastSegments(1).toString(); } } case IClasspathEntry.CPE_VARIABLE: { String name= cpentry.getPath().makeRelative().toString(); StringBuffer buf= new StringBuffer(name); IClasspathEntry entry= JavaCore.getClasspathVariable(name); if (entry != null) { buf.append(" - "); // resolve path.... IPath pathExtension= cpentry.getPath().removeFirstSegments(1); buf.append(entry.getPath().append(pathExtension)); } return buf.toString(); } case IClasspathEntry.CPE_PROJECT: return cpentry.getPath().lastSegment(); case IClasspathEntry.CPE_SOURCE: { StringBuffer buf= new StringBuffer(cpentry.getPath().toString()); if (!resource.exists()) { buf.append(' '); buf.append(fNewLabel); } return buf.toString(); } } } return super.getText(element); }
9698 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9698/9f7cccd5adde81caeed18d82cd2b07e2a17aee49/CPListLabelProvider.java/buggy/org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/wizards/buildpaths/CPListLabelProvider.java
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String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_)/1000; long total = numRecRead_+numRecWritten_+numRecSkipped_; return "R/W/S=" + numRecRead_+"/"+numRecWritten_+"/"+numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, elapsed) + " [rec/s]";
String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_) / 1000; long total = numRecRead_ + numRecWritten_ + numRecSkipped_; return "R/W/S=" + numRecRead_ + "/" + numRecWritten_ + "/" + numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, elapsed) + " [rec/s]";
String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_)/1000; long total = numRecRead_+numRecWritten_+numRecSkipped_; return "R/W/S=" + numRecRead_+"/"+numRecWritten_+"/"+numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, elapsed) + " [rec/s]"; }
51718 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51718/e10b40e8014547113799b2653164e8c990d41209/PipeMapRed.java/buggy/src/contrib/streaming/src/java/org/apache/hadoop/streaming/PipeMapRed.java
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alt49=5;
alt50=5;
public ArgumentValueDescr argument_value() throws RecognitionException { ArgumentValueDescr value; Token t=null; value = null; String text = null; try { // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:784:17: ( (t= STRING | t= INT | t= FLOAT | t= BOOL | t= ID | t= 'null' ) ) // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:784:17: (t= STRING | t= INT | t= FLOAT | t= BOOL | t= ID | t= 'null' ) { // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:784:17: (t= STRING | t= INT | t= FLOAT | t= BOOL | t= ID | t= 'null' ) int alt49=6; switch ( input.LA(1) ) { case STRING: alt49=1; break; case INT: alt49=2; break; case FLOAT: alt49=3; break; case BOOL: alt49=4; break; case ID: alt49=5; break; case 43: alt49=6; break; default: NoViableAltException nvae = new NoViableAltException("784:17: (t= STRING | t= INT | t= FLOAT | t= BOOL | t= ID | t= \'null\' )", 49, 0, input); throw nvae; } switch (alt49) { case 1 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:784:25: t= STRING { t=(Token)input.LT(1); match(input,STRING,FOLLOW_STRING_in_argument_value1844); text = getString( t ); value=new ArgumentValueDescr(ArgumentValueDescr.STRING, text); } break; case 2 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:785:25: t= INT { t=(Token)input.LT(1); match(input,INT,FOLLOW_INT_in_argument_value1855); text = t.getText(); value=new ArgumentValueDescr(ArgumentValueDescr.INTEGRAL, text); } break; case 3 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:786:25: t= FLOAT { t=(Token)input.LT(1); match(input,FLOAT,FOLLOW_FLOAT_in_argument_value1868); text = t.getText(); value=new ArgumentValueDescr(ArgumentValueDescr.DECIMAL, text); } break; case 4 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:787:25: t= BOOL { t=(Token)input.LT(1); match(input,BOOL,FOLLOW_BOOL_in_argument_value1879); text = t.getText(); value=new ArgumentValueDescr(ArgumentValueDescr.BOOLEAN, text); } break; case 5 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:788:25: t= ID { t=(Token)input.LT(1); match(input,ID,FOLLOW_ID_in_argument_value1891); text = t.getText(); value=new ArgumentValueDescr(ArgumentValueDescr.VARIABLE, text); } break; case 6 : // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:789:25: t= 'null' { t=(Token)input.LT(1); match(input,43,FOLLOW_43_in_argument_value1902); text = "null"; value=new ArgumentValueDescr(ArgumentValueDescr.NULL, text); } break; } } } catch (RecognitionException re) { reportError(re); recover(input,re); } finally { } return value; }
6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/8c3be0baa8712893e2dea6fbb679cbb7e80de372/RuleParser.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParser.java
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writePatternList(-1, 0, writer);
writer.writeComment("The unique patterns for codon position "+from); id += Integer.toString(from);
public void writePatternList(XMLWriter writer) { writer.writeText(""); if (alignment.getDataType() == Nucleotides.INSTANCE && codonHetero) { for (int i = 1; i <= 3; i++) { writePatternList(i, 3, writer); } } else { writePatternList(-1, 0, writer); } }
49053 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49053/7eb182fdc6ec6132f284563d4a12000c84e4a277/BeastGenerator.java/buggy/trunk/src/dr/app/beauti/BeastGenerator.java
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if (typeCode == OBJ_DELTA) {
if (typeCode == OBJ_DELTA) {
private PackedObjectReader reader() throws IOException { final int typeCode; final String typeStr; ObjectId deltaBase = null; final long offset; int c; long size; int shift; c = packStream.xuint8(); typeCode = (c >> 4) & 7; size = c & 15; shift = 4; while ((c & 0x80) != 0) { c = packStream.xuint8(); size += (c & 0x7f) << shift; shift += 7; } switch (typeCode) { case OBJ_EXT: throw new IOException("Extended object types not supported."); case OBJ_COMMIT: typeStr = Constants.TYPE_COMMIT; break; case OBJ_TREE: typeStr = Constants.TYPE_TREE; break; case OBJ_BLOB: typeStr = Constants.TYPE_BLOB; break; case OBJ_TAG: typeStr = Constants.TYPE_TAG; break; case OBJ_TYPE_5: throw new IOException("Object type 5 not supported."); case OBJ_TYPE_6: throw new IOException("Object type 6 not supported."); case OBJ_DELTA: typeStr = null; break; default: throw new IOException("Unknown object type " + typeCode + "."); } if (typeCode == OBJ_DELTA) { deltaBase = new ObjectId(packStream .xread(Constants.OBJECT_ID_LENGTH)); } offset = packStream.position(); return new PackedObjectReader(this, typeStr, size, offset, deltaBase); }
45532 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45532/95e2adba28c9a11f01009dd846fb7366bec613c5/PackReader.java/buggy/org.spearce.jgit/src/org/spearce/jgit/lib/PackReader.java
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case 43: break;
case 44: break;
public Yytoken yylex() throws java.io.IOException { int zzInput; int zzAction; // cached fields: int zzCurrentPosL; int zzMarkedPosL; int zzEndReadL = zzEndRead; char [] zzBufferL = zzBuffer; char [] zzCMapL = ZZ_CMAP; int [] zzTransL = ZZ_TRANS; int [] zzRowMapL = ZZ_ROWMAP; int [] zzAttrL = ZZ_ATTRIBUTE; while (true) { zzMarkedPosL = zzMarkedPos; zzAction = -1; zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL; zzState = zzLexicalState; zzForAction: { while (true) { if (zzCurrentPosL < zzEndReadL) zzInput = zzBufferL[zzCurrentPosL++]; else if (zzAtEOF) { zzInput = YYEOF; break zzForAction; } else { // store back cached positions zzCurrentPos = zzCurrentPosL; zzMarkedPos = zzMarkedPosL; boolean eof = zzRefill(); // get translated positions and possibly new buffer zzCurrentPosL = zzCurrentPos; zzMarkedPosL = zzMarkedPos; zzBufferL = zzBuffer; zzEndReadL = zzEndRead; if (eof) { zzInput = YYEOF; break zzForAction; } else { zzInput = zzBufferL[zzCurrentPosL++]; } } int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ]; if (zzNext == -1) break zzForAction; zzState = zzNext; int zzAttributes = zzAttrL[zzState]; if ( (zzAttributes & 1) == 1 ) { zzAction = zzState; zzMarkedPosL = zzCurrentPosL; if ( (zzAttributes & 8) == 8 ) break zzForAction; } } } // store back cached position zzMarkedPos = zzMarkedPosL; switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) { case 18: { String s = yytext(); w.write(s); if(debug) log("Matched unicode: "+s); } case 31: break; case 8: { String s = yytext(); w.write(s); if(debug) log("Matched close braces: "+s); } case 32: break; case 21: { String s = yytext(); w.write(s); if(debug) log("Matched HTML comment: "+s); } case 33: break; case 15: { String s = yytext(); w.write(s); if(debug) log("Matched ~=: "+s); } case 34: break; case 12: { String s = yytext(); if(debug) log("Matched string: "+s); if(paranoidStringCheck && s.indexOf(':') != -1) { w.write("/* Deleted disallowed string */"); log("Deleted disallowed string: "+s); } else { w.write(s); } } case 35: break; case 24: { String s = yytext(); w.write(s); if(debug) log("Matched @page: "+s); } case 36: break; case 13: { String s = yytext(); w.write(s); if(debug) log("Matched number: "+s); } case 37: break; case 1: { String s = yytext(); char c = s.charAt(0); log("Matched anything: "+yytext()+" - ignoring"); w.write("/* ignored unmatched char: "+c+" */"); // single char cannot break out of comment } case 38: break; case 6: { String s = yytext(); w.write(s); if(debug) log("Matched semicolon: "+s); } case 39: break; case 19: { String s = yytext(); if(debug) log("Got hexcolor: "+s); w.write(s); } case 40: break; case 7: { String s = yytext(); w.write(s); if(debug) log("Matched open braces: "+s); } case 41: break; case 2: { String s = yytext(); w.write(s); if(debug) log("Matched ident: "+s); } case 42: break; case 23: { String s = yytext(); w.write(s); if(debug) log("Matched unicode range: "+s); } case 43: break; case 28: { String s = yytext(); w.write(s); if(debug) log("Matched @font-face: "+s); } case 44: break; case 9: { String s = yytext(); if(s.startsWith("url")) throwError("Invalid contents of url()"); w.write(s); if(debug) log("Matched function start: "+s); } case 45: break; case 17: { String s = yytext(); w.write(s); if(debug) log("Matched HTML comment: "+s); } case 46: break; case 3: { String s = yytext(); w.write(s); if(debug) log("Matched whitespace: "+s); } case 47: break; case 22: { String s = yytext(); if(debug) log("Ignoring unrecognizable url: "+s); w.write("/* Ignoring unmatchable URL */url()"); } case 48: break; case 27: { String s = yytext(); if(debug) log("Found @import: "+s); s = s.substring("@import".length()); s = s.trim(); DecodedStringThingy dst = new DecodedStringThingy(s); s = dst.data; if(debug) log("URL: "+s); s = processImportURL(s); dst.data = s; if(debug) log("Processed URL: "+s); if(dst.quote == ' ') dst.quote = '\"'; if (!(s == null || s.equals(""))) { if(debug) log("URL now: "+s); s = "@import "+dst.toString(); if(debug) log("Writing: "+s); w.write(s); } else if(debug) log("Dropped @import"); } case 49: break; case 29: { String s = yytext(); w.write(s); if(debug) log("Matched important: "+s); } case 50: break; case 20: { String s = yytext(); StringBuffer sb = new StringBuffer(s.length()); sb.append("/* "); boolean inPrefix = true; for(int i=2;i<s.length()-2;i++) { char c = s.charAt(i); if(inPrefix && Character.isWhitespace(c)) { continue; } inPrefix = false; if(Character.isDigit(c) || Character.isWhitespace(c) || Character.isLetter(c) || c == '.' || c == '_' || c == '-') { // No @, no !, etc; IE has been known to do things with comments // in CSS, and other browsers may too sb.append(c); } } while(Character.isWhitespace(sb.charAt(sb.length()-1))) sb.deleteCharAt(sb.length()-1); sb.append(" */"); w.write(sb.toString()); if(debug) log("Matched comment: "+s+" -> "+sb.toString()); } case 51: break; case 25: { // This is horrible. However it seems that there is no other way to do it with either jflex or CUP, as {URL} cannot be an unambiguous token :( String s = yytext(); if(debug) log("Recognized URL: "+s); DecodedStringThingy dst = new DecodedStringThingy(s); if(!dst.url) { throw new IllegalStateException("parsing url().. isn't a url()"); } if(dst.suffix.length() > 0) { yypushback(dst.suffix.length()); dst.suffix = ""; } s = dst.data; if(debug) log("URL now: "+s); s = processURL(s); dst.data = s; if(s == null || s.equals("")) { if(debug) log("URL invalid"); w.write("url()"); } else { s = dst.toString(); if(debug) log("Writing: "+s); w.write(s); } } case 52: break; case 11: { String s = yytext(); w.write(s); if(debug) log("Matched measurement: "+s); } case 53: break; case 16: { String s = yytext(); w.write(s); if(debug) log("Matched |=: "+s); } case 54: break; case 30: { String s = yytext(); detectedCharset = s; if(debug) log("Matched and ignoring charset: "+s); // Ignore } case 55: break; case 10: { if(postBadImportFlag) { // Ignore postBadImportFlag = false; if(debug) log("Ignoring mediums list because after bad import: "+ yytext()); } else { String s = yytext(); w.write(s); if(debug) log("Matched and passing on mediums list: "+s); } } case 56: break; case 26: { String s = yytext(); s = s.substring("@media".length()).trim(); w.write("@media "+s); if(debug) log("Matched @media: "+s); } case 57: break; case 4: { String s = yytext(); w.write(s); if(debug) log("Matched single char: "+s); } case 58: break; case 14: { String s = yytext(); w.write(s); if(debug) log("Matched #name: "+s); } case 59: break; case 5: { String s = yytext(); w.write(s); if(debug) log("Matched function end: "+s); } case 60: break; default: if (zzInput == YYEOF && zzStartRead == zzCurrentPos) { zzAtEOF = true; return null; } else { zzScanError(ZZ_NO_MATCH); } } } }
8026 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8026/0704f93643187b0aba45fa8c09ca25a3fa9173bb/CSSTokenizerFilter.java/clean/src/freenet/clients/http/filter/CSSTokenizerFilter.java
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Set checkedMethods) {
Set<MethodSignature> checkedMethods) {
private boolean newExpressionMustAssignVariable(PsiExpression expression, PsiVariable field, Set checkedMethods) { final PsiNewExpression callExpression = (PsiNewExpression) expression; final PsiExpressionList argumentList = callExpression.getArgumentList(); if (argumentList != null) { final PsiExpression[] args = argumentList.getExpressions(); for (int i = 0; i < args.length; i++) { final PsiExpression arg = args[i]; if (expressionMustAssignVariable(field, arg, checkedMethods)) { return true; } } } final PsiArrayInitializerExpression arrayInitializer = callExpression.getArrayInitializer(); if (expressionMustAssignVariable(field, arrayInitializer, checkedMethods)) { return true; } final PsiExpression[] arrayDimensions = callExpression.getArrayDimensions(); if (arrayDimensions != null) { for (int i = 0; i < arrayDimensions.length; i++) { final PsiExpression dim = arrayDimensions[i]; if (expressionMustAssignVariable(field, dim, checkedMethods)) { return true; } } } return false; }
17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/2d46d291193579a7564649b4881c7ea8e02eda5b/InitializationReadUtils.java/clean/plugins/InspectionGadgets/src/com/siyeh/ig/psiutils/InitializationReadUtils.java
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PostInputStream reqContent = new PostInputStream(input, length);
public java.util.Map act (Redirector redirector, SourceResolver resolver, Map objectModel, String source, Parameters params) throws IOException {// File homedir = new File(System.getProperty("user.home")); File workfile = new File("c:/home/work/playground/wyona-cms/xopus", "xopus-temp.txt");// File workfile = new File(homedir, "xopus-temp.txt"); getLogger().debug("workfile="+workfile.getAbsoluteFile()); // Get request object Request request=(Request)objectModel.get(Constants.REQUEST_OBJECT); if(request == null){ getLogger().error ("No request object"); return null; } else { getLogger().debug ("SitemapURI = " + request.getSitemapURI()); } // Get session// Session session=request.getSession(true);// if(session == null){// getLogger().error("No session object");// return null;// } boolean appendFlag = true; PrintWriter out = new PrintWriter(new FileWriter(workfile.toString(), appendFlag)); HttpRequest httpReq = (HttpRequest) objectModel.get(HttpEnvironment.HTTP_REQUEST_OBJECT); InputStream input = httpReq.getInputStream(); int length = request.getContentLength(); PostInputStream reqContent = new PostInputStream(input, length); // Enumeration reqParams = request.getParameterNames();// String currParamName = null;// while (reqParams.hasMoreElements()) {// currParamName = (String)reqParams.nextElement();// out.println("Request Parameter: " + currParamName + " = " + request.getParameter(currParamName));// getLogger().debug("Request Parameter: " + currParamName + " = " + request.getParameter(currParamName));// }// Enumeration reqAttribs = request.getAttributeNames();// String currAttribName = null;// while (reqAttribs.hasMoreElements()) {// currAttribName = (String)reqAttribs.nextElement();// out.println("Request Attribute: " + currAttribName + " = " + request.getAttribute(currAttribName));// getLogger().debug("Request Attribute: " + currAttribName + " = " + request.getAttribute(currAttribName));// }// Enumeration reqHeaders = request.getHeaderNames();// String currHeaderName = null;// while (reqHeaders.hasMoreElements()) {// currHeaderName = (String)reqHeaders.nextElement();// out.println("Request Header: " + currHeaderName + " = " + request.getHeader(currHeaderName));// getLogger().debug("Request Header: " + currHeaderName + " = " + request.getHeader(currHeaderName));// } out.close(); Map sitemapParams = new HashMap(); sitemapParams.put("world", "hello");// Request request = (Request) objectModel.get(Constants.REQUEST_OBJECT);// // request.setAttribute("hello", "world"); return sitemapParams; }
45951 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45951/6999ba6da049d58d4186df6fa73c2252d2e0e58d/XopusHandlerAction.java/buggy/src/java/org/apache/lenya/cms/cocoon/acting/XopusHandlerAction.java
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generatedIndex.addException(exception.getAttributeValue("id"), exception.getAttributeValue("reference"), exception.getAttributeValue("realm"));
generatedIndex.addException(exception.getAttributeValue("id"), exception.getAttributeValue("reference"), exception.getAttributeValue("realm"));
public static void main(final String[] args) throws IOException, JDOMException, ClassNotFoundException { // Show usage. if (args.length != 2) { System.out.println("Usage:\nSerializableIndexCreator indexFile outputFile"); return; } // Read index file. System.out.println("Reading file " + args[0]); final Element rootElement = (new SAXBuilder()).build(new File(args[0])).getRootElement(); // Process association elements (yes, we support more than one...) final List associations = rootElement.getChildren("Associations"); for (int i = 0; i < associations.size(); i++) { // Process realms in this association. final List realms = ((Element) associations.get(i)).getChildren("Realm"); for (int j = 0; j < realms.size(); j++) { // Process bases in this realm. Element realm = (Element) realms.get(j); final List bases = realm.getChildren("Base"); for (int k = 0; k < bases.size(); k++) { Element base = (Element) bases.get(k); generatedIndex.addAssociation(realm.getAttributeValue("name"), base.getAttributeValue("name"), base.getAttributeValue("username", ""), base.getAttributeValue("password", "")); } } } // Process exception elements. final List exceptions = rootElement.getChildren("Exception"); for (int i = 0; i < exceptions.size(); i++) { Element exception = (Element) exceptions.get(i); generatedIndex.addException(exception.getAttributeValue("id"), exception.getAttributeValue("reference"), exception.getAttributeValue("realm")); } // Dump the index to console. System.out.println(generatedIndex.toString()); // Write the index to file. System.out.println("Writing to file " + args[1]); ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(args[1])); out.writeObject(generatedIndex); out.close(); // Read the index from file. ObjectInputStream in = new ObjectInputStream(new FileInputStream(args[1])); final SerializableIndex writtenIndex = (SerializableIndex) in.readObject(); in.close(); // Dump written index to console. System.out.println(writtenIndex.toString()); // Verify index contents. if (generatedIndex.equals(writtenIndex)) System.out.println("Generated and written indexes match"); else System.err.println("Generated and written indexes DO NOT match!"); }
1637 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1637/c2a01c88ac40e5922d9674402319433ab9ff9ee5/SerializableIndexCreator.java/buggy/moria2/modules/moria-dm/src/java/no/feide/moria/directory/index/tools/SerializableIndexCreator.java
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public RubyClass newSubClass(String name, RubyModule parent) { return new ArrayMetaClass(name, this, parent);
public RubyClass newSubClass(String name, SinglyLinkedList parentCRef) { return new ArrayMetaClass(name, this, parentCRef);
public RubyClass newSubClass(String name, RubyModule parent) { return new ArrayMetaClass(name, this, parent); }
48072 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48072/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ArrayMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ArrayMetaClass.java
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return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class);
return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class);
public TreeSelectionListener[] getTreeSelectionListeners() { return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class); }
1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/3826e72d9ebe31a854c4d01d6c8f1ec65a8d80fe/JTree.java/clean/core/src/classpath/javax/javax/swing/JTree.java
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public org.quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { org.quickfix.field.LegRepurchaseTerm value = new org.quickfix.field.LegRepurchaseTerm();
public quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { quickfix.field.LegRepurchaseTerm value = new quickfix.field.LegRepurchaseTerm();
public org.quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { org.quickfix.field.LegRepurchaseTerm value = new org.quickfix.field.LegRepurchaseTerm(); getField(value); return value; }
5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/AssignmentReport.java/buggy/src/java/src/quickfix/fix44/AssignmentReport.java
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public TransHopMeta findTransHop(StepMeta from, StepMeta to)
public TransHopMeta findTransHop(String name)
public TransHopMeta findTransHop(StepMeta from, StepMeta to) { int i; for (i = 0; i < nrTransHops(); i++) { TransHopMeta hi = getTransHop(i); if (hi.isEnabled()) { if (hi.getFromStep() != null && hi.getToStep() != null && hi.getFromStep().equals(from) && hi.getToStep().equals(to)) { return hi; } } } return null; }
9547 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9547/09ee04adf8b99db73f2d4a5ca5719f1065f0db70/TransMeta.java/buggy/src/be/ibridge/kettle/trans/TransMeta.java
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if (colorsLeft.contains(colorNames[i]))
if (colorsLeft.contains(Constants.colorNames[i]))
private PickColor(JFrame parentFrame, String playerName, Set colorsLeft) { super(parentFrame, playerName + ", Pick a Color", true); color = null; setBackground(Color.lightGray); pack(); Container contentPane = getContentPane(); contentPane.setLayout(new FlowLayout()); for (int i = 0; i < 6; i++) { if (colorsLeft.contains(colorNames[i])) { JButton button = new JButton(); int scale = Scale.get(); button.setPreferredSize(new Dimension(7 * scale, 4 * scale)); button.setText(colorNames[i]); button.setMnemonic(colorMnemonics[i]); button.setBackground(background[i]); button.setForeground(foreground[i]); button.addActionListener(this); contentPane.add(button); } } pack(); // Center dialog on screen. Dimension d = Toolkit.getDefaultToolkit().getScreenSize(); setLocation(new Point(d.width / 2 - getSize().width / 2, d.height / 2 - getSize().height / 2)); addWindowListener(this); setVisible(true); }
51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/3d0c995d677b11834bfd5b0d9ff7d5fef51d296e/PickColor.java/clean/Colossus/net/sf/colossus/client/PickColor.java
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throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ( ( int ) getByte() & 0xff ); int hi = ( ( int ) getByte() & 0xff ) << 8;
throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ((int) getByte() & 0xff); int hi = ((int) getByte() & 0xff) << 8;
public int getTdsShort() throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ( ( int ) getByte() & 0xff ); int hi = ( ( int ) getByte() & 0xff ) << 8; return lo | hi; }
439 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/439/8552aa9a2df546b4d1977c587b04556c7b854ab4/TdsComm.java/buggy/trunk/jtds/src/main/net/sourceforge/jtds/jdbc/TdsComm.java
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public org.quickfix.field.LegProduct getLegProduct() throws FieldNotFound { org.quickfix.field.LegProduct value = new org.quickfix.field.LegProduct();
public quickfix.field.LegProduct getLegProduct() throws FieldNotFound { quickfix.field.LegProduct value = new quickfix.field.LegProduct();
public org.quickfix.field.LegProduct getLegProduct() throws FieldNotFound { org.quickfix.field.LegProduct value = new org.quickfix.field.LegProduct(); getField(value); return value; }
8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/AllocationReport.java/clean/src/java/src/quickfix/fix44/AllocationReport.java
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return "'wider' vs. 'wieder' in 'spiegeln .. wider'";
return "'wider' vs. 'wieder' in 'spiegeln ... wider'";
public String getDescription() { return "'wider' vs. 'wieder' in 'spiegeln .. wider'"; }
10628 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10628/f7908bf726e4486c23dc9e73f978d0e8604a84b2/WiederVsWiderRule.java/clean/trunk/JLanguageTool/src/java/de/danielnaber/languagetool/rules/de/WiederVsWiderRule.java
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if (Configuration.DEBUG)
Parser getParser() { log.entering(this.getClass().getName(), "getParser"); //$NON-NLS-1$ Parser result = new ClasspathToolParser(Main.LIST_CMD, true); result.setHeader(Messages.getString("ListCmd.20")); //$NON-NLS-1$ result.setFooter(Messages.getString("ListCmd.19")); //$NON-NLS-1$ OptionGroup options = new OptionGroup(Messages.getString("ListCmd.18")); //$NON-NLS-1$ options.add(new Option(Main.ALIAS_OPT, Messages.getString("ListCmd.17"), //$NON-NLS-1$ Messages.getString("ListCmd.16")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { _alias = argument; } }); options.add(new Option(Main.STORETYPE_OPT, Messages.getString("ListCmd.15"), //$NON-NLS-1$ Messages.getString("ListCmd.14")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { _ksType = argument; } }); options.add(new Option(Main.KEYSTORE_OPT, Messages.getString("ListCmd.13"), //$NON-NLS-1$ Messages.getString("ListCmd.12")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { _ksURL = argument; } }); options.add(new Option(Main.STOREPASS_OPT, Messages.getString("ListCmd.11"), //$NON-NLS-1$ Messages.getString("ListCmd.10")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { _ksPassword = argument; } }); options.add(new Option(Main.PROVIDER_OPT, Messages.getString("ListCmd.9"), //$NON-NLS-1$ Messages.getString("ListCmd.8")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { _providerClassName = argument; } }); options.add(new Option(Main.VERBOSE_OPT, Messages.getString("ListCmd.7")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { verbose = true; } }); options.add(new Option(Main.RFC_OPT, Messages.getString("ListCmd.6")) //$NON-NLS-1$ { public void parsed(String argument) throws OptionException { rfc = true; } }); result.add(options); log.exiting(this.getClass().getName(), "getParser", result); //$NON-NLS-1$ return result; }
50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/6e10879cd4d1df8b463898498b99e01d9ae63f24/ListCmd.java/clean/core/src/classpath/tools/gnu/classpath/tools/keytool/ListCmd.java
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recv.getRuntime().getCurrentContext().yield(((IRubyObject) iter.next()));
recv.getRuntime().getCurrentContext().yield(obj);
public static IRubyObject each_object(IRubyObject recv, IRubyObject[] args) { RubyModule rubyClass; if (args.length == 0) { rubyClass = recv.getRuntime().getObject(); } else { rubyClass = (RubyModule) args[0]; } int count = 0; Iterator iter = recv.getRuntime().getObjectSpace().iterator(rubyClass); while (iter.hasNext()) { count++; recv.getRuntime().getCurrentContext().yield(((IRubyObject) iter.next())); } return recv.getRuntime().newFixnum(count); }
45753 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45753/448643c70dc9b78a7d89a851b9202699d07cfbb3/RubyObjectSpace.java/buggy/src/org/jruby/RubyObjectSpace.java
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public Collection getFinalItems() { Map symbolToGeneMap = new HashMap(); Map organismDbIdToGeneMap = new HashMap(); Set genesWithDuplicatedSymbols = new LinkedHashSet(); Set genesWithDuplicatedOrganismDbIds = new LinkedHashSet(); Iterator finalItemIter = finalItems.iterator(); while (finalItemIter.hasNext()) { Item thisGene = (Item) finalItemIter.next(); { Attribute symbolAtt = thisGene.getAttribute("symbol"); if (symbolAtt != null) { String symbol = symbolAtt.getValue(); Item otherGene = (Item) symbolToGeneMap.get(symbol); if (otherGene == null) { symbolToGeneMap.put(symbol, thisGene); } else { genesWithDuplicatedSymbols.add(otherGene); genesWithDuplicatedSymbols.add(thisGene); } } } { Attribute organismDbIdAtt = thisGene.getAttribute("organismDbId"); if (organismDbIdAtt != null) { String organismDbId = organismDbIdAtt.getValue(); Item otherGene = (Item) organismDbIdToGeneMap.get(organismDbId); if (otherGene == null) { organismDbIdToGeneMap.put(organismDbId, thisGene); } else { genesWithDuplicatedOrganismDbIds.add(otherGene); genesWithDuplicatedOrganismDbIds.add(thisGene); } } } } Iterator genesWithDuplicatedSymbolsIter = genesWithDuplicatedSymbols.iterator(); int count = 1; while (genesWithDuplicatedSymbolsIter.hasNext()) { Item thisGene = (Item) genesWithDuplicatedSymbolsIter.next(); String newValue = thisGene.getAttribute("symbol").getValue() + "-duplicate-symbol-" + count++; thisGene.setAttribute("symbol", newValue); LOG.warn("gene (" + thisGene.getAttribute("identifier").getValue() + ") has duplicated symbol, created new symbol: " + newValue); } Iterator genesWithDuplicatedOrganismDbIdsIter = genesWithDuplicatedOrganismDbIds.iterator(); count = 1; while (genesWithDuplicatedOrganismDbIdsIter.hasNext()) { Item thisGene = (Item) genesWithDuplicatedOrganismDbIdsIter.next(); String newValue = thisGene.getAttribute("organismDbId").getValue() + "-duplicate-organismDbId-" + count++; thisGene.setAttribute("organismDbId", newValue); LOG.warn("gene (" + thisGene.getAttribute("identifier").getValue() + ") has duplicated organismDbId, created new organismDbId: " + newValue); } finalItemIter = finalItems.iterator(); while (finalItemIter.hasNext()) { Item thisItem = (Item) finalItemIter.next(); if (pseudogeneIds.contains(thisItem.getAttribute("identifier").getValue())) { thisItem.setClassName(tgtNs + "Pseudogene"); } } return finalItems; }
29158 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/29158/31bc580cca55cf1ca86b208560d77684e4e5f280/ChadoGFF3RecordHandler.java/buggy/flymine/model/chado/src/java/org/flymine/dataconversion/ChadoGFF3RecordHandler.java
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public EditorDocument(EditorLayer root) { setRoot(root); _reader = createReader(); myEditorWriter = new EditorWriter(this);
public EditorDocument() { this(new EditorLayer("Root"));
public EditorDocument(EditorLayer root) { setRoot(root); _reader = createReader(); myEditorWriter = new EditorWriter(this); }
5015 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5015/2e50a9eef7af3667f7f619208cdcd43990516eaa/EditorDocument.java/buggy/BIOSIM/src/com/traclabs/biosim/editor/base/EditorDocument.java
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Dimension panelSize = getSize(); BufferedImage outImage =
final Dimension panelSize = getSize(); final BufferedImage outImage =
private synchronized void loadAndCache( File imageFile ) throws IOException { // Even if caller does this, it's important that we check again, // because this method is synchronized and called from numerous // Threads. String key = imageFile.getAbsolutePath(); BufferedImage cachedImage = cache.getImage( key ); if( cachedImage == null ) { Dimension panelSize = getSize(); BufferedImage outImage = GUIUtils.loadImageFromFile( imageFile, lastThumbnailBuffer, panelSize, panelSize ); lastThumbnailBuffer = outImage; cachedImage = GUIUtils.createThumbnail( outImage, null, panelSize.width, panelSize.height, panelSize.width, panelSize.height, true ); cache.addImage( key, cachedImage ); } }
57504 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57504/608a7845186eaee19d103ba95951ad8a3b5dbbe7/ImagePreviewPanel.java/buggy/javaimagealbum/src/com/javaimagealbum/ImagePreviewPanel.java
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RubyString newStr = newString(getValue().substring(beg, end)); newStr.infectBy(this); return newStr;
return newString(getValue().substring(beg, end)).infectBy(this);
private IRubyObject substr(int beg, int len) { int strLen = getValue().length(); if (len < 0 || beg > strLen) { return getRuntime().getNil(); } if (beg < 0) { beg += strLen; if (beg < 0) { return getRuntime().getNil(); } } int end = Math.min(strLen, beg + len); RubyString newStr = newString(getValue().substring(beg, end)); newStr.infectBy(this); return newStr; }
46217 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46217/c3988bcedc9973ff7f8c24ac6423ecb89f3ada35/RubyString.java/buggy/src/org/jruby/RubyString.java
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imcode.server.IMCServiceInterface imc = IMCServiceRMI.getInterface(prop.getProperty("imcserver")); String imagePath = imc.getImageHome() + user.getLangPrefix() + "/107"; CalenderDbManager dbmanager = new CalenderDbManager(); int player_id; int meta_id = Integer.parseInt("" + prop.getProperty("calender_meta_id")); String server = "" + prop.getProperty("imcserver"); int highestPermission = IMCServiceRMI.getUserHighestPermissionSet(server, meta_id, user.getUserId());
if (action.equalsIgnoreCase("NEW")) {
public void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException { // Get info and check login HttpSession session = req.getSession(true); Properties prop = super.getSessionParams(req, res); imcode.server.User user = super.checkLogin(req, res, prop.getProperty("start_url")); if (user == null) return; String action = req.getParameter("action");/********************* NEW ******************************************************************/ if (action.equalsIgnoreCase("NEW")) { res.sendRedirect("CalenderCreator?action=NEW"); return; }/********************* VIEW *****************************************************************/ else if (action.equalsIgnoreCase("VIEW")){ Calendar greger; handleViews(req, session); handleDate(req, session); // Make sure we have a calendar in the session if (session.getAttribute("calendar") == null){ greger = Calendar.getInstance(); session.setAttribute("calendar", greger); } else greger = (Calendar)session.getAttribute("calendar"); // Check if we should change month if (req.getParameter("month") != null) { greger.add(Calendar.MONTH, Integer.parseInt(req.getParameter("month"))); int month = greger.get(Calendar.MONTH); session.setAttribute("calendar", greger); } // Get the path to the images imcode.server.IMCServiceInterface imc = IMCServiceRMI.getInterface(prop.getProperty("imcserver")); String imagePath = imc.getImageHome() + user.getLangPrefix() + "/107"; CalenderDbManager dbmanager = new CalenderDbManager(); int player_id; // Check the permission status int meta_id = Integer.parseInt("" + prop.getProperty("calender_meta_id")); String server = "" + prop.getProperty("imcserver"); int highestPermission = IMCServiceRMI.getUserHighestPermissionSet(server, meta_id, user.getUserId()); if ( highestPermission >= 3 ){ res.sendRedirect("GetDoc?meta_id=1001"); return ; } // Retreive the literal month SimpleDateFormat formatter = new SimpleDateFormat ("MMMM"); Date time = greger.getTime(); String strMonth = formatter.format(time); String disabled = new String(); // prepare overview for parsing String players_menu = req.getParameter("players_menu"); if (players_menu != null) session.setAttribute("calender_player", players_menu); CalenderOverview calOverview = new CalenderOverview(); // Prepare main menu for parsning Vector variables = miniAlmanac(session); String select = selectBox(prop); String overview = new String(); // parses the overview part overview = calOverview.makeOverview(req, res, prop, user, variables); variables.add("#MONTHVIEW#"); variables.add("CalenderManager?action=view&view=month"); variables.add("#DAYVIEW#"); variables.add("CalenderManager?action=view&view=day"); variables.add("#MONTH#"); variables.add(strMonth); variables.add("#YEAR#"); variables.add("" + greger.get(Calendar.YEAR)); variables.add("#BACKPIC#"); variables.add(imagePath + "/back.gif"); variables.add("#BACKLINK#"); variables.add("CalenderManager?action=view&month=-1"); variables.add("#NEXTPIC#"); variables.add(imagePath + "/next.gif"); variables.add("#NEXTLINK#"); variables.add("CalenderManager?action=view&month=1"); variables.add("#NEW_APPOINTMENT#"); // Check if the user is viewing their own calendar or have full rights String id = dbmanager.translateId(prop, user.getUserId()); if ( id == null) id = "50001"; if ( session.getAttribute("calender_player") == null ) disabled = "disabled"; else if ( session.getAttribute("calender_player") != null && highestPermission == 0 ) disabled = ""; else{ player_id = Integer.parseInt( "" + session.getAttribute("calender_player")); int userPlayer = Integer.parseInt (id); disabled = ( (player_id == userPlayer && highestPermission <= 1) || highestPermission == 0) ? "" : "disabled"; } variables.add("<input type=" + '"' + "submit" + '"' + "name=" + '"' + "newapp" + '"' + " value=" + '"' + "New Appointment" + '"' + disabled + "><input type=" + '"' + "hidden" + '"' + " name=" + '"' + "action" + '"' + " value=" + '"' + "view" + '"' + "><input type=" + '"' + "hidden" + '"' + " name=" + '"' + "view" + '"' + " value=" + '"' + "NewApp" + '"' + ">"); variables.add("#SIZE#"); variables.add( selectBoxSize(prop) ); variables.add("#SELECTBOX#"); variables.add(select); String menu = parseCalender(req, res, variables, "main_menu.html", user); String admin = parseCalender(req, res, null, "adminpanel.html", user); // Parse the menu and overview into a 2 cell template Vector var = new Vector(); var.add("#MENU#"); var.add(menu); var.add("#OVERVIEW#"); var.add(overview); // Check if user is an administrator var.add("#ADMIN#"); if (highestPermission == 0) var.add(admin); else if (highestPermission > 0) var.add("&nbsp"); String all = parseCalender(req, res, var, "main_table.html", user); sendCalender(res, all); return; } }
8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/a270627916b37a677a391dd9f45c54d3d6f12503/CalenderManager.java/clean/servlets/calender/CalenderManager.java
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Object data; boolean finished = false; while (!finished) { try { data = context.operands.pop(); if (data instanceof PAToken) { if ( ( (PAToken) data).type == PAToken.MARK) { finished = true; } } } catch (EmptyStackException e) { throw new PainterException(e.toString()); }
Object data[]; data = context.popOperands(1); if (! (data[0] instanceof Number)) { throw new PainterException("index: wrong arguments"); } int index = ( (Number) data[0]).intValue(); try { context.operands.push(context.operands.elementAt(index)); } catch (ArrayIndexOutOfBoundsException e) { throw new PainterException(e.toString());
public void execute(PAContext context) throws PainterException { Object data; boolean finished = false; while (!finished) { try { data = context.operands.pop(); if (data instanceof PAToken) { if ( ( (PAToken) data).type == PAToken.MARK) { finished = true; } } } catch (EmptyStackException e) { throw new PainterException(e.toString()); } } }
3506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3506/3cd4a973dbdca1f7072d8e189d388c5a878cc9a6/PAContext.java/clean/itext/src/com/lowagie/text/pdf/codec/postscript/PAContext.java
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void appendResource(String resourceName) { InputStream in = this.getClass().getClassLoader().getResourceAsStream(resourceName); if (in == null) { log.warn("resource not found:" + resourceName); return; } LineNumberReader lnr = new LineNumberReader(new InputStreamReader(in)); String strSource; try { while ((strSource = lnr.readLine()) != null) { this.out.append(strSource).append("\n"); } lnr.close(); } catch (IOException e) { log.error("Error Reading resource " + resourceName, e); } }
53077 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53077/48ba85e12dae361be74b9faa8225f7e118b83737/Report.java/buggy/jtidyservlet/src/java/org/w3c/tidy/servlet/reports/Report.java
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case 119:
public final void parenthesizedExpr() throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST parenthesizedExpr_AST = null; AST e_AST = null; match(LPAREN); { switch ( LA(1)) { case LPAREN: case NCNAME: case XQUERY: case VERSION: case LITERAL_namespace: case LITERAL_default: case LITERAL_function: case LITERAL_variable: case STRING_LITERAL: case LITERAL_element: case DOLLAR: case LITERAL_as: case LITERAL_empty: case STAR: case PLUS: case LITERAL_item: case LITERAL_for: case LITERAL_let: case LITERAL_some: case LITERAL_if: case LITERAL_order: case LITERAL_by: case LITERAL_then: case LITERAL_else: case LITERAL_or: case LITERAL_and: case LT: case MINUS: case LITERAL_div: case LITERAL_mod: case LITERAL_union: case LITERAL_intersect: case LITERAL_except: case SLASH: case DSLASH: case LITERAL_text: case LITERAL_node: case SELF: case XML_COMMENT: case AT: case PARENT: case LITERAL_child: case LITERAL_self: case LITERAL_attribute: case LITERAL_descendant: case 115: case 116: case LITERAL_parent: case LITERAL_ancestor: case 119: case 120: case DOUBLE_LITERAL: case DECIMAL_LITERAL: case INTEGER_LITERAL: case LITERAL_comment: case 125: case 126: case XML_PI: case LITERAL_document: case LITERAL_collection: { expr(); e_AST = (AST)returnAST; astFactory.addASTChild(currentAST, returnAST); break; } case RPAREN: { break; } default: { throw new NoViableAltException(LT(1), getFilename()); } } } match(RPAREN); if ( inputState.guessing==0 ) { parenthesizedExpr_AST = (AST)currentAST.root; parenthesizedExpr_AST= (AST)astFactory.make( (new ASTArray(2)).add(astFactory.create(PARENTHESIZED,"Parenthesized")).add(e_AST)); currentAST.root = parenthesizedExpr_AST; currentAST.child = parenthesizedExpr_AST!=null &&parenthesizedExpr_AST.getFirstChild()!=null ? parenthesizedExpr_AST.getFirstChild() : parenthesizedExpr_AST; currentAST.advanceChildToEnd(); } parenthesizedExpr_AST = (AST)currentAST.root; returnAST = parenthesizedExpr_AST; }
2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/d31ac0d651739cc32d55579c14a0786f6bfb4200/XPathParser2.java/clean/src/org/exist/parser/XPathParser2.java
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public org.quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { org.quickfix.field.UnderlyingRepoCollateralSecurityType value = new org.quickfix.field.UnderlyingRepoCollateralSecurityType();
public quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { quickfix.field.UnderlyingRepoCollateralSecurityType value = new quickfix.field.UnderlyingRepoCollateralSecurityType();
public org.quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { org.quickfix.field.UnderlyingRepoCollateralSecurityType value = new org.quickfix.field.UnderlyingRepoCollateralSecurityType(); getField(value); return value; }
8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/Quote.java/clean/src/java/src/quickfix/fix44/Quote.java
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Document aggregatorConfig = DocumentHelper.createDocument(); Element configElement = aggregatorConfig.addElement("config");
final Document xpthCfg = DocumentHelper.createDocument(); final Element configElement = xpthCfg.addElement("config");
public ProcessorInput connectProcessorToHref(Node node, Processor processor, String inputName, ASTHref href) { LocationData locationData = node == null ? null : (LocationData) ((Element) node).getData(); ProcessorInput processorInput = processor.createInput(inputName); if (href instanceof ASTHrefId) { String referencedId = ((ASTHrefId) href).getId(); // Nice messsage for current() if (referencedId.equals(ForEachProcessor.CURRENT) && !idToOutputMap.containsKey(ForEachProcessor.CURRENT)) throw new ValidationException("Function current() can only be used in a for-each block", locationData); // Reference to previously defined id if (!idToOutputMap.containsKey(referencedId)) throw new ValidationException("Reference to undeclared output id \"" + referencedId + "\"", locationData); ProcessorOutput referencedOutput = (ProcessorOutput) idToOutputMap.get(referencedId); if (referencedOutput.getInput() == null) { // Output is virgin: just connect it to this processor processorInput.setOutput(referencedOutput); referencedOutput.setInput(processorInput); } else if (outputIdToTeeProcessor.containsKey(referencedId)) { // ASTInput already shared: just add ourselves to the tee Processor tee = (TeeProcessor) outputIdToTeeProcessor.get(referencedId); ProcessorOutput teeOutput = tee.createOutput(ProcessorImpl.OUTPUT_DATA); teeOutput.setInput(processorInput); processorInput.setOutput(teeOutput); } else { // Force menage a trois by introducing a tee Processor tee = new TeeProcessor(locationData); createdProcessors.add(tee); outputIdToTeeProcessor.put(referencedId, tee); // Reconnect the "other guy" to the tee output ProcessorOutput firstTeeOutput = tee.createOutput(ProcessorImpl.OUTPUT_DATA); ProcessorInput otherGuyInput = referencedOutput.getInput(); firstTeeOutput.setInput(otherGuyInput); otherGuyInput.setOutput(firstTeeOutput); // Connect tee to processor ProcessorOutput secondTeeOutput = tee.createOutput(ProcessorImpl.OUTPUT_DATA); secondTeeOutput.setInput(processorInput); processorInput.setOutput(secondTeeOutput); // Connect tee input ProcessorInput teeInput = tee.createInput(ProcessorImpl.INPUT_DATA); teeInput.setOutput(referencedOutput); referencedOutput.setInput(teeInput); } } else if (href instanceof ASTHrefAggregate) { ASTHrefAggregate hrefAggregate = (ASTHrefAggregate) href; // Connect aggregator to config Processor aggregator = new AggregatorProcessor(); Document aggregatorConfig = DocumentHelper.createDocument(); Element configElement = aggregatorConfig.addElement("config"); configElement.addElement("root").addText(hrefAggregate.getRoot()); addNamespaces(configElement, node); DOMGenerator configGenerator = new DOMGenerator(aggregatorConfig); PipelineUtils.connect(configGenerator, ProcessorImpl.OUTPUT_DATA, aggregator, ProcessorImpl.INPUT_CONFIG); // Connect data input to aggregator for (Iterator i = hrefAggregate.getHrefs().iterator(); i.hasNext();) { ASTHref id = (ASTHref) i.next(); connectProcessorToHref(node, aggregator, ProcessorImpl.INPUT_DATA, id); } // Connect aggregator output to current processor ProcessorOutput aggregatorOutput = aggregator.createOutput(ProcessorImpl.OUTPUT_DATA); aggregatorOutput.setInput(processorInput); processorInput.setOutput(aggregatorOutput); } else if (href instanceof ASTHrefURL) { try { // Get the docbase url from the location data if available // and concatenate it with the current href URL url = URLFactory.createURL(locationData != null && locationData.getSystemID() != null ? locationData.getSystemID() : null, ((ASTHrefURL) href).getURL()); // This is interpreted as a URL, use URL Generator Processor urlGenerator = new URLGenerator(url.toExternalForm()); ProcessorOutput referencedOutput = urlGenerator.createOutput(ProcessorImpl.OUTPUT_DATA); referencedOutput.setInput(processorInput); processorInput.setOutput(referencedOutput); } catch (MalformedURLException e) { throw new ValidationException(e, locationData); } } else if (href instanceof ASTHrefXPointer) { ASTHrefXPointer hrefXPointer = (ASTHrefXPointer) href; // Create config for XPath processor Document aggregatorConfig = DocumentHelper.createDocument(); Element configElement = aggregatorConfig.addElement("config"); configElement.addElement("xpath").addText(hrefXPointer.getXpath()); addNamespaces(configElement, node); // Connect XPath processor to config Processor xpathProcessor = new XPathProcessor(); xpathProcessor.setLocationData(locationData); DOMGenerator configGenerator = new DOMGenerator(aggregatorConfig); PipelineUtils.connect(configGenerator, ProcessorImpl.OUTPUT_DATA, xpathProcessor, ProcessorImpl.INPUT_CONFIG); // Connect data input to XPath processor connectProcessorToHref(node, xpathProcessor, ProcessorImpl.INPUT_DATA, hrefXPointer.getHref()); // Connect XPath processor output to current processor ProcessorOutput xpathOutput = xpathProcessor.createOutput(ProcessorImpl.OUTPUT_DATA); xpathOutput.setInput(processorInput); processorInput.setOutput(xpathOutput); } else { throw new ValidationException("Unsupported href type", locationData); } return processorInput; }
10097 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10097/558be30a09b76fdcd48f89d08b1308f894e34fcb/PipelineBlock.java/buggy/src/java/org/orbeon/oxf/processor/pipeline/PipelineBlock.java
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webClient.getPage( URL_FIRST, SubmitMethod.POST, Collections.EMPTY_LIST);
webClient.getPage(URL_FIRST);
public void testAboutURL() throws Exception { final WebClient webClient = new WebClient(); final MockWebConnection webConnection = new MockWebConnection(webClient); final String firstContent = "<html><body><script language='JavaScript'>" + "w2=window.open(\"about:blank\", \"AboutBlank\");" + "w2.document.open();" + "w2.document.write(\"<html><head><title>hello</title></head><body></body></html>\");" + "w2.document.close();" + "</script></body></html>"; webConnection.setResponse( URL_FIRST, firstContent, 200, "OK", "text/html", Collections.EMPTY_LIST); webClient.setWebConnection(webConnection); webClient.getPage( URL_FIRST, SubmitMethod.POST, Collections.EMPTY_LIST); final WebWindow webWindow = webClient.getWebWindowByName("AboutBlank"); assertNotNull(webWindow); // final HtmlPage page = (HtmlPage) webWindow.getEnclosedPage(); // assertEquals("<html><head><title>hello</title></head><body></body></html>",page.getDocument().toString()); }
3508 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3508/429ab9b3f74495494a904bb8f0f080fb6c368809/WindowTest.java/clean/htmlunit/src/test/java/com/gargoylesoftware/htmlunit/javascript/host/WindowTest.java
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Bitstream [] bitstreams = bundles[0].getBitstreams();
Bitstream[] bitstreams = bundles[0].getBitstreams();
private void processFileList(Context context, HttpServletRequest request, HttpServletResponse response, SubmissionInfo subInfo) throws ServletException, IOException, SQLException, AuthorizeException { String buttonPressed = UIUtil.getSubmitButton(request, "submit_next"); Item item = subInfo.submission.getItem(); if (buttonPressed.equals("submit_cancel")) { doCancellation(request, response, subInfo, SubmitServlet.FILE_LIST, SubmitServlet.UPLOAD_FILES); } else if (buttonPressed.equals("submit_prev")) { // In some cases, this might be expected to go back // to the "choose file" page, but that doesn't make // a great deal of sense, so go back to edit metadata 2. doStep(context, request, response, subInfo, EDIT_METADATA_2); } else if (buttonPressed.equals("submit_next")) { // Finished the uploading of files // FIXME Validation check here // set primary bitstream if (request.getParameter("primary_bitstream_id") != null) { Bundle[] bundles = item.getBundles(); bundles[0].setPrimaryBitstreamID(new Integer(request.getParameter("primary_bitstream_id")).intValue()); bundles[0].update(); } userHasReached(subInfo, REVIEW_SUBMISSION); doStep(context, request, response, subInfo, REVIEW_SUBMISSION); context.complete(); } else if (buttonPressed.equals("submit_more")) { // set primary bitstream if (request.getParameter("primary_bitstream_id") != null) { Bundle[] bundles = item.getBundles(); bundles[0].setPrimaryBitstreamID(new Integer(request.getParameter("primary_bitstream_id")).intValue()); bundles[0].update(); context.commit(); } // Upload another file request.setAttribute("submission.info", subInfo); JSPManager.showJSP(request, response, "/submit/choose-file.jsp"); } else if (buttonPressed.equals("submit_show_checksums")) { // Show the checksums showUploadFileList(request, response, subInfo, false, true); } else if (buttonPressed.startsWith("submit_describe_")) { // Change the description of a bitstream Bitstream bitstream; // Which bitstream does the user want to describe? try { int id = Integer.parseInt(buttonPressed.substring(16)); bitstream = Bitstream.find(context, id); } catch (NumberFormatException nfe) { bitstream = null; } if (bitstream == null) { // Invalid or mangled bitstream ID log.warn(LogManager.getHeader(context, "integrity_error", UIUtil.getRequestLogInfo(request))); JSPManager.showIntegrityError(request, response); return; } // Display the form letting them change the description subInfo.bitstream = bitstream; request.setAttribute("submission.info", subInfo); JSPManager.showJSP(request, response, "/submit/change-file-description.jsp"); } else if (buttonPressed.startsWith("submit_remove_")) { // A "remove" button must have been pressed Bitstream bitstream; // Which bitstream does the user want to describe? try { int id = Integer.parseInt(buttonPressed.substring(14)); bitstream = Bitstream.find(context, id); } catch (NumberFormatException nfe) { bitstream = null; } if (bitstream == null) { // Invalid or mangled bitstream ID log.warn(LogManager.getHeader(context, "integrity_error", UIUtil.getRequestLogInfo(request))); JSPManager.showIntegrityError(request, response); return; } // remove bitstream from bundle.. // delete bundle if it's now empty // FIXME: Assumes: 1 bitstream in each bundle Bundle[] bundles = bitstream.getBundles(); bundles[0].removeBitstream(bitstream); Bitstream [] bitstreams = bundles[0].getBitstreams(); // remove bundle if it's now empty if( bitstreams.length < 1) { item.removeBundle(bundles[0]); item.update(); } showFirstUploadPage(context,request, response, subInfo); context.complete(); } else if (buttonPressed.startsWith("submit_format_")) { // A "format is wrong" button must have been pressed Bitstream bitstream; // Which bitstream does the user want to describe? try { int id = Integer.parseInt(buttonPressed.substring(14)); bitstream = Bitstream.find(context, id); } catch (NumberFormatException nfe) { bitstream = null; } if (bitstream == null) { // Invalid or mangled bitstream ID log.warn(LogManager.getHeader(context, "integrity_error", UIUtil.getRequestLogInfo(request))); JSPManager.showIntegrityError(request, response); return; } subInfo.bitstream = bitstream; showGetFileFormat(context, request, response, subInfo, bitstream); } else { doStepJump(context, request, response, subInfo); } }
47292 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47292/a176d2867eb2549c8a0d804504654d2a0a52f4a7/SubmitServlet.java/clean/dspace/src/org/dspace/app/webui/servlet/SubmitServlet.java
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new MarginBorder(one, MapMode.DPtoLP(15), one, MapMode .DPtoLP(15) / 2));
new MarginBorder(one, mm.DPtoLP(15), one, mm.DPtoLP(15) / 2));
protected IFigure createFigure() { if (isResizable()) { ResizableCompartmentFigure compartmentFigure = new NestedResizableCompartmentFigure(); ConstrainedToolbarLayout layout = new ConstrainedToolbarLayout(); layout.setStretchMajorAxis(false); layout.setStretchMinorAxis(false); layout.setMinorAlignment(ConstrainedToolbarLayout.ALIGN_TOPLEFT); compartmentFigure.getContentPane().setLayoutManager(layout); compartmentFigure.getTextPane().add(getLabel()); // if the compartment is resizeable then we need to put a border // around the text compartment so that we have enough room for the // collpase handle. int one = MapMode.DPtoLP(1); // indent to make room for collapse handle for each nested list item compartmentFigure.getTextPane().setBorder( new MarginBorder(one, MapMode.DPtoLP(15) / 2, one, MapMode .DPtoLP(15) / 2)); // indent for visual appearance compartmentFigure.getContentPane().setBorder( new MarginBorder(one, MapMode.DPtoLP(15), one, MapMode .DPtoLP(15) / 2)); WrapLabel label = getLabel(); label.setLabelAlignment(PositionConstants.LEFT); label.setVisible(true); return compartmentFigure; } else { return super.createFigure(); } }
1758 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1758/adc1102179d667e4a670bfc5711892726a23a343/NestableListItemEditPart.java/buggy/org.eclipse.gmf.runtime/plugins/org.eclipse.gmf.runtime.diagram.ui/src/org/eclipse/gmf/runtime/diagram/ui/editparts/NestableListItemEditPart.java
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IJavaProject currentProject, IPath currentOutput, int outputTraverseMode) {
RootInfo rootInfo, OutputInfo outputInfo) {
protected boolean traverseDelta( IResourceDelta delta, int elementType, IJavaProject currentProject, IPath currentOutput, int outputTraverseMode) { IResource res = delta.getResource(); // process current delta boolean processChildren = true; if (currentProject != null || res instanceof IProject) { if (this.currentElement == null || !this.currentElement.getJavaProject().equals(currentProject)) { // force the currentProject to be used this.currentElement = (Openable)currentProject; } try { processChildren = this.updateCurrentDeltaAndIndex(delta, elementType, currentProject); } catch (JavaModelException e) { // non java resource or invalid project return false; } } else { // not yet inside a package fragment root processChildren = true; } // get the project's output location if (currentOutput == null) { try { IJavaProject proj = currentProject == null ? (IJavaProject)this.createElement(res.getProject(), IJavaElement.JAVA_PROJECT, null) : currentProject; if (proj != null) { currentOutput = proj.getOutputLocation(); if (proj.getProject().getFullPath().equals(currentOutput)){ // case of proj==bin==src outputTraverseMode = SOURCE; } else { // check case of src==bin IClasspathEntry[] classpath = proj.getResolvedClasspath(true); for (int i = 0, length = classpath.length; i < length; i++) { IClasspathEntry entry = classpath[i]; if (entry.getPath().equals(currentOutput)) { outputTraverseMode = (entry.getEntryKind() == IClasspathEntry.CPE_SOURCE) ? SOURCE : BINARY; break; } } } } } catch (JavaModelException e) { } } // process children if needed if (processChildren) { IResourceDelta[] children = delta.getAffectedChildren(); boolean oneChildOnClasspath = false; int length = children.length; IResourceDelta[] orphanChildren = new IResourceDelta[length]; Openable parent = null; boolean isValidParent = true; for (int i = 0; i < length; i++) { IResourceDelta child = children[i]; IResource childRes = child.getResource(); // check source attachment change this.checkSourceAttachmentChange(child, childRes); // find out whether the child is a package fragment root of the current project IPath childPath = childRes.getFullPath(); IJavaProject projectOfRoot = (IJavaProject)this.roots.get(childPath); boolean isPkgFragmentRoot = projectOfRoot != null && (projectOfRoot.getProject().getFullPath().isPrefixOf(childPath)); int childType = this.elementType( childRes, child.getKind(), child.getFlags(), elementType, isPkgFragmentRoot); if (isPkgFragmentRoot) { this.currentExclusionPatterns = (char[][])this.exclusionPatterns.get(childPath); } // filter out changes in output location boolean outputIsFiltered = false; if (currentOutput != null && currentOutput.isPrefixOf(childPath)) { if (outputTraverseMode != IGNORE) { // case of bin=src if (outputTraverseMode == SOURCE && childType == IJavaElement.CLASS_FILE) { outputIsFiltered = true; } else { // case of .class file under project and no source folder // proj=bin if (childType == IJavaElement.JAVA_PROJECT && childRes instanceof IFile && Util.isValidClassFileName(childRes.getName())) { outputIsFiltered = true; } } } else { outputIsFiltered = true; } } // traverse delta for child in the same project if (!outputIsFiltered) { if (childType == -1 || !this.traverseDelta(child, childType, (currentProject == null && isPkgFragmentRoot) ? projectOfRoot : currentProject, currentOutput, outputTraverseMode)) { try { if (currentProject != null) { if (!isValidParent) continue; if (parent == null) { if (this.currentElement == null || !this.currentElement.getJavaProject().equals(currentProject)) { // force the currentProject to be used this.currentElement = (Openable)currentProject; } if (elementType == IJavaElement.JAVA_PROJECT || (elementType == IJavaElement.PACKAGE_FRAGMENT_ROOT && res instanceof IProject)) { // NB: attach non-java resource to project (not to its package fragment root) parent = (Openable)currentProject; } else { parent = this.createElement(res, elementType, currentProject); } if (parent == null) { isValidParent = false; continue; } } // add child as non java resource nonJavaResourcesChanged(parent, child); } else { orphanChildren[i] = child; } } catch (JavaModelException e) { } } else { oneChildOnClasspath = true; } } // if child is a package fragment root of another project, traverse delta too if (projectOfRoot != null && !isPkgFragmentRoot) { this.traverseDelta(child, IJavaElement.PACKAGE_FRAGMENT_ROOT, projectOfRoot, null, IGNORE); // binary output of projectOfRoot cannot be this root // NB: No need to check the return value as the child can only be on the classpath } // if the child is a package fragment root of one or several other projects HashSet set; if ((set = (HashSet)this.otherRoots.get(childPath)) != null) { IPackageFragmentRoot currentRoot = (currentProject == null ? projectOfRoot : currentProject).getPackageFragmentRoot(childRes); Iterator iterator = set.iterator(); while (iterator.hasNext()) { IJavaProject project = (IJavaProject) iterator.next(); this.cloneCurrentDelta(project, currentRoot); } } } if (oneChildOnClasspath || res instanceof IProject) { // add orphan children (case of non java resources under project) IProject rscProject = res.getProject(); JavaProject adoptiveProject = (JavaProject)JavaCore.create(rscProject); if (adoptiveProject != null && this.hasJavaNature(rscProject)) { // delta iff Java project (18698) for (int i = 0; i < length; i++) { if (orphanChildren[i] != null) { try { nonJavaResourcesChanged(adoptiveProject, orphanChildren[i]); } catch (JavaModelException e) { } } } } } // else resource delta will be added by parent return isValidParent && (currentProject != null || oneChildOnClasspath); } else { // if not on classpath or if the element type is -1, // it's a non-java resource return currentProject != null && elementType != -1; } }
10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/51917a0c83743a82a23c6f16badda9326a65b40d/DeltaProcessor.java/buggy/org.eclipse.jdt.core/model/org/eclipse/jdt/internal/core/DeltaProcessor.java
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public void addWebinf(FileSet fs) { webInfFileSets.addElement(fs);
public void addWebinf(PrefixedFileSet fs) { fs.setPrefix("WEB-INF/"); super.addFileset(fs);
public void addWebinf(FileSet fs) { webInfFileSets.addElement(fs); }
17033 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17033/dd89f4f61343bf6c11cd8dc2c409204a89614b0b/War.java/buggy/src/main/org/apache/tools/ant/taskdefs/War.java
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return new ImageIcon(MemberIcon.class.getResource("icons/" + name + ".png"));
return new ImageIcon(MemberIcon.class.getResource(name + ".png"));
private Icon loadIcon(String name) { return new ImageIcon(MemberIcon.class.getResource("icons/" + name + ".png")); }
13291 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13291/5c7bda37945b66e7410c0540795964eb65b10c8e/MemberIcon.java/buggy/src/org/jedit/ruby/icons/MemberIcon.java
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super(arguments);
super(arguments, outStream);
public TestableCommandlineParser(String[] arguments) { super(arguments); }
50993 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50993/f321a7dc6c9f0229cc5266d9c2923a04a755be60/TestCommandlineParser.java/clean/test/org/jruby/test/TestCommandlineParser.java
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} else { try { fw = Integer.parseInt(fontWeight); } catch (NumberFormatException e) {
} else { try { fw = Integer.parseInt( fontWeight ); } catch ( NumberFormatException e ) {
private void updatePreview() { if (sample != null) { String fontFamily = name.getValueForName(name.getComboBoxControl( null).getText()); if (fontFamily == null) { fontFamily = "Times New Roman"; //$NON-NLS-1$ } String familyValue = (String) DesignerConstants.familyMap .get(fontFamily); if (familyValue == null) { familyValue = fontFamily; } // set default font size. String fontSize = DesignChoiceConstants.FONT_SIZE_MEDIUM; int sizeValue = Integer.valueOf( (String) DesignerConstants.fontMap.get(fontSize)) .intValue(); if (size.InComboNamesList(size.getComboBoxControl( getFieldEditorParent()).getText())) { fontSize = size.getBoxValueForName(size.getComboBoxControl( getFieldEditorParent()).getText()); if (DesignChoiceConstants.FONT_SIZE_LARGER.equals(fontSize)) { fontSize = DesignChoiceConstants.FONT_SIZE_LARGE; } else if (DesignChoiceConstants.FONT_SIZE_SMALLER .equals(fontSize)) { fontSize = DesignChoiceConstants.FONT_SIZE_SMALL; } sizeValue = Integer.valueOf( (String) DesignerConstants.fontMap.get(fontSize)) .intValue(); } else { String text = size.getComboBoxControl(getFieldEditorParent()) .getText(); String pre = size.getMeasureValueForName(size .getMeasureControl(getFieldEditorParent()).getText()); if (DEUtil.isValidNumber(text)) { sizeValue = (int) CSSUtil .convertToPoint(new DimensionValue(Double .parseDouble(text), pre)); } } boolean italic = false; String fontStyle = style.getValueForName(style.getComboBoxControl( getFieldEditorParent()).getText()); if (DesignChoiceConstants.FONT_STYLE_ITALIC.equals(fontStyle)) { italic = true; } String fontWeight = weight.getValueForName(weight .getComboBoxControl(null).getText()); boolean bold = false; int fw = 400; if (DesignChoiceConstants.FONT_WEIGHT_NORMAL.equals(fontWeight)) { // no change. } else if (DesignChoiceConstants.FONT_WEIGHT_BOLD .equals(fontWeight)) { bold = true; fw = 700; } else if (DesignChoiceConstants.FONT_WEIGHT_BOLDER .equals(fontWeight)) { bold = true; fw = 1000; } else if (DesignChoiceConstants.FONT_WEIGHT_LIGHTER .equals(fontWeight)) { fw = 100; } else { try { fw = Integer.parseInt(fontWeight); } catch (NumberFormatException e) { fw = 400; } if (fw > 700) { bold = true; } } sample.setFontFamily(familyValue); sample.setFontSize(sizeValue); sample.setBold(bold); sample.setItalic(italic); sample.setFontWeight(fw); // sample.setForeground( new Color( Display.getCurrent( ), // color.getColorSelector( ).getColorValue( ) ) ); sample.setForeground(ColorManager.getColor(color.getColorSelector() .getRGB())); sample.setUnderline(docoration.getUnderLinePropControl(null) .getSelection()); sample.setLinethrough(docoration.getLineThroughPropControl(null) .getSelection()); sample.setOverline(docoration.getOverLinePropControl(null) .getSelection()); sample.updateView(); } }
15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/9a44d88745cf69dac1395f41e7c3c7bf8bdeb1e6/FontPreferencePage.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/dialogs/FontPreferencePage.java
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sbPrefix.append ("} /* end of ")
sbPrefix.append ("\n} /* end of ")
StringBuffer appendClassifierEnd (StringBuffer sbPrefix, MClassifier cls, boolean fPlain) { if (fPlain) { return sbPrefix.append ("}"); } else { String sClassifierKeyword; if (cls instanceof MClassImpl) sClassifierKeyword = "class"; else if (cls instanceof MInterface) sClassifierKeyword = "interface"; else return null; // actors, use cases etc. sbPrefix.append ("} /* end of ") .append (sClassifierKeyword) .append (" ") .append (generateName (cls.getName())) .append (" */\n"); return sbPrefix; } }
7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/bb658de6acc9b265eb8d85a0b7eebd5274159778/GeneratorJava.java/buggy/src_new/org/argouml/language/java/generator/GeneratorJava.java
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NativeJavaObject.initJSObject();
if (Context.useJSObject) NativeJavaObject.initJSObject();
public static Scriptable init(Scriptable scope) throws PropertyException { NativeJavaPackage packages = new NativeJavaPackage(""); packages.setPrototype(getObjectPrototype(scope)); packages.setParentScope(scope); // We want to get a real alias, and not a distinct JavaPackage // with the same packageName, so that we share classes and packages // that are underneath. NativeJavaPackage javaAlias = (NativeJavaPackage)packages.get("java", packages); // It's safe to downcast here since initStandardObjects takes // a ScriptableObject. ScriptableObject global = (ScriptableObject) scope; global.defineProperty("Packages", packages, ScriptableObject.DONTENUM); global.defineProperty("java", javaAlias, ScriptableObject.DONTENUM); for (int i = 0; i < commonPackages.length; i++) packages.forcePackage(commonPackages[i]); NativeJavaObject.initJSObject(); Method[] m = FunctionObject.findMethods(NativeJavaPackage.class, "jsFunction_getClass"); FunctionObject f = new FunctionObject("getClass", m[0], global); global.defineProperty("getClass", f, ScriptableObject.DONTENUM); // I think I'm supposed to return the prototype, but I don't have one. return packages; }
19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/2deb34d1bc45c20256876de120e23e6f853fca7d/NativeJavaPackage.java/buggy/src/org/mozilla/javascript/NativeJavaPackage.java
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assertTrue(vcs.hasEntry(p("root1/dir"))); assertTrue(vcs.hasEntry(p("root1/dir/file"))); assertFalse(vcs.hasEntry(p("root2/dir")));
assertTrue(vcs.hasEntry(p("/root1/dir"))); assertTrue(vcs.hasEntry(p("/root1/dir/file"))); assertFalse(vcs.hasEntry(p("/root2/dir")));
public void testMovingDirectory() { vcs.createDirectory(p("root1")); vcs.createDirectory(p("root2")); vcs.createDirectory(p("root1/dir")); vcs.createFile(p("root1/dir/file"), null); vcs.apply(); vcs.move(p("root1/dir"), p("root2")); vcs.apply(); assertTrue(vcs.hasEntry(p("root2/dir"))); assertTrue(vcs.hasEntry(p("root2/dir/file"))); assertFalse(vcs.hasEntry(p("root1/dir"))); vcs._revert(); assertTrue(vcs.hasEntry(p("root1/dir"))); assertTrue(vcs.hasEntry(p("root1/dir/file"))); assertFalse(vcs.hasEntry(p("root2/dir"))); }
56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/8a6fdbc15b3cd4aaa232cf2026aa4a60418c162a/LocalVcsBasicsTest.java/clean/LocalVcs/test/com/intellij/localvcs/LocalVcsBasicsTest.java
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PartListDO partList;
PartListDO partList = null;
public void setDownloadDO(DownloadDO downloadDO) { try { if (downloadDO == null) { if (partListWorkerThread != null){ partListWorkerThread.interrupt(); partListWorkerThread = null; } actualDLDateiName.setText(""); actualDlOverviewTable.setPartList(null); } else if (downloadDO.getStatus() != DownloadDO.FERTIGSTELLEN && downloadDO.getStatus() != DownloadDO.FERTIG) { final DownloadDO tempDO = downloadDO; if (partListWorkerThread != null){ partListWorkerThread.interrupt(); } partListWorkerThread = new Thread() { public void run() { actualDLDateiName.setText(" " + tempDO.getFilename() + " (" + tempDO.getTemporaryFileNumber() + ".data)"); actualDlOverviewTable.setPartList(null); PartListDO partList; while (!isInterrupted()) { partList = ApplejuiceFassade.getInstance(). getPartList(tempDO); if (isInterrupted()){ break; } if (partList == null) { interrupt(); actualDLDateiName.setText(""); actualDlOverviewTable.setPartList(null); } else { actualDlOverviewTable.setPartList(partList); try { sleep(2000); } catch (InterruptedException iE) { interrupt(); } } } } }; partListWorkerThread.start(); } } catch (Exception e) { if (partListWorkerThread != null){ partListWorkerThread.interrupt(); partListWorkerThread = null; } actualDLDateiName.setText(""); actualDlOverviewTable.setPartList(null); if (logger.isEnabledFor(Level.ERROR)) { logger.error(ApplejuiceFassade.ERROR_MESSAGE, e); } } }
13641 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13641/a0167d08ac0015d50d3daf6af06587d16846db34/DownloadDOOverviewPanel.java/clean/AJClientGUI/src/de/applejuicenet/client/gui/DownloadDOOverviewPanel.java
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TableItem[] items = fFeatureTable.getTable().getItems();
private void handleRemoveAll() { TableItem[] items = fFeatureTable.getTable().getItems(); IProduct product = getProduct(); for (int i = 0; i < items.length; i++) { product.removeFeature((IProductFeature)items[i].getData()); } }
8783 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8783/0922672dba6c85780b9886149844f0cebf366cc0/FeatureSection.java/buggy/ui/org.eclipse.pde.ui/src/org/eclipse/pde/internal/ui/editor/product/FeatureSection.java
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return checkClass(clazz, context);
if (clazz!=null) return checkClass(clazz, context); } if (type!=null) { final String presentableText = type.getPresentableText(); boolean result = delegate.doMatch(presentableText,context); if (!result && type instanceof PsiArrayType && ((PsiArrayType)type).getComponentType() instanceof PsiClassType) { PsiClass clazz = ((PsiClassType)((PsiArrayType)type).getComponentType()).resolve(); if (clazz!=null) { result = delegate.doMatch(clazz.getQualifiedName()+"[]",context); } } return result;
private boolean doMatchWithTheType(final PsiType type, MatchContext context) { if (type instanceof PsiClassType) { PsiClass clazz = ((PsiClassType)type).resolve(); return checkClass(clazz, context); } else { if (type!=null) { return delegate.doMatch(type.getPresentableText(),context); } else { return false; } } }
56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/646e21c9f1e2a86b317e61d9c8c4112f91211a8e/ExprTypePredicate.java/clean/plugins/structuralsearch/source/com/intellij/structuralsearch/impl/matcher/predicates/ExprTypePredicate.java
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MakeMessages.getString("GCCScannerConfigUtil.Error_Message"), e));
MakeMessages.getString("DiscoveredPathManager.File_Error_Message"), e));
private void loadDiscoveredScannerInfoFromState(IProject project, LinkedHashMap includes, LinkedHashMap symbols) throws CoreException { // Save the document IPath path = MakeCorePlugin.getWorkingDirectory(); path = path.append(project.getName() + ".sc"); //$NON-NLS-1$ if (path.toFile().exists()) { try { FileInputStream file = new FileInputStream(path.toFile()); DocumentBuilder parser = DocumentBuilderFactory.newInstance().newDocumentBuilder(); Document document = parser.parse(file); Node rootElement = document.getFirstChild(); if (rootElement.getNodeName().equals("scannerInfo")) { //$NON-NLS-1$ Node child = rootElement.getFirstChild(); loadDiscoveredScannerInfo(includes, symbols, child); } } catch (IOException e) { throw new CoreException(new Status(IStatus.ERROR, MakeCorePlugin.getUniqueIdentifier(), -1, MakeMessages.getString("GCCScannerConfigUtil.Error_Message"), e)); //$NON-NLS-1$ } catch (ParserConfigurationException e) { MakeCorePlugin.log(e); throw new CoreException(new Status(IStatus.ERROR, MakeCorePlugin.getUniqueIdentifier(), -1, MakeMessages.getString("GCCScannerConfigUtil.Error_Message"), e)); //$NON-NLS-1$ } catch (SAXException e) { MakeCorePlugin.log(e); throw new CoreException(new Status(IStatus.ERROR, MakeCorePlugin.getUniqueIdentifier(), -1, MakeMessages.getString("GCCScannerConfigUtil.Error_Message"), e)); //$NON-NLS-1$ } } }
54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/e5c605c11d12e06ca6008ccaf7fb505ea2b10fa8/DiscoveredPathManager.java/buggy/build/org.eclipse.cdt.make.core/src/org/eclipse/cdt/make/internal/core/scannerconfig/DiscoveredPathManager.java
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IRubyObject separatorObject = getRuntime().getGlobalVariables().get("$,"); RubyString separator; if (separatorObject.isNil()) { separator = getRuntime().newString(""); } else { separator = RubyString.stringValue(separatorObject);
if(!getRuntime().registerInspecting(this)) { return getRuntime().newString("[...]");
public IRubyObject to_s() { IRubyObject separatorObject = getRuntime().getGlobalVariables().get("$,"); RubyString separator; if (separatorObject.isNil()) { separator = getRuntime().newString(""); } else { separator = RubyString.stringValue(separatorObject); } return join(separator); }
47273 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47273/c41f74da90a0fae6fd661222d04c6b602b3bc6ec/RubyArray.java/clean/src/org/jruby/RubyArray.java
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Messages.setPrimaryResource("net.sf.statsvn.statcvs"); SvnConfigurationOptions.getTaskLogger().log(Messages.getString("PROJECT_NAME") + Messages.NL); if (args.length == 0) { printProperUsageAndExit(); } if (args.length == 1) { final String arg = args[0].toLowerCase(Locale.getDefault()); if (arg.equals("-h") || arg.equals("-help")) { printProperUsageAndExit(); } else if (arg.equals("-version")) { printVersionAndExit(); } } try { new SvnCommandLineParser(args).parse(); SvnStartupUtils.checkSvnVersionSufficient(); SvnStartupUtils.checkRepoRootAvailable(); generateDefaultHTMLSuite(); } catch (final ConfigurationException cex) { SvnConfigurationOptions.getTaskLogger().log(cex.getMessage()); System.exit(1); } catch (final LogSyntaxException lex) { printLogErrorMessageAndExit(lex.getMessage()); } catch (final IOException ioex) { printIoErrorMessageAndExit(ioex.getMessage()); } catch (final OutOfMemoryError oome) { printOutOfMemMessageAndExit(); } catch (final SvnVersionMismatchException ever) { printErrorMessageAndExit(ever.getMessage()); }
init(); verifyArguments(args); generate();
public static void main(final String[] args) { Messages.setPrimaryResource("net.sf.statsvn.statcvs"); // primary is statcvs.properties in net.sf.statsvn SvnConfigurationOptions.getTaskLogger().log(Messages.getString("PROJECT_NAME") + Messages.NL); if (args.length == 0) { printProperUsageAndExit(); } if (args.length == 1) { final String arg = args[0].toLowerCase(Locale.getDefault()); if (arg.equals("-h") || arg.equals("-help")) { printProperUsageAndExit(); } else if (arg.equals("-version")) { printVersionAndExit(); } } try { new SvnCommandLineParser(args).parse(); SvnStartupUtils.checkSvnVersionSufficient(); SvnStartupUtils.checkRepoRootAvailable(); generateDefaultHTMLSuite(); } catch (final ConfigurationException cex) { SvnConfigurationOptions.getTaskLogger().log(cex.getMessage()); System.exit(1); } catch (final LogSyntaxException lex) { printLogErrorMessageAndExit(lex.getMessage()); } catch (final IOException ioex) { printIoErrorMessageAndExit(ioex.getMessage()); } catch (final OutOfMemoryError oome) { printOutOfMemMessageAndExit(); } catch (final SvnVersionMismatchException ever) { printErrorMessageAndExit(ever.getMessage()); } System.exit(0); }
48585 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48585/c1c75132886c7887973ec2afecb94c7120ec698a/Main.java/clean/statsvn/src/net/sf/statsvn/Main.java
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}
}
public TreeMap getCertificateProfiles(Admin admin) { TreeMap returnval = new TreeMap(); Collection result = null; try { result = certprofilehome.findAll(); if (result.size() > 0) { returnval = new TreeMap(); Iterator i = result.iterator(); while (i.hasNext()) { CertificateProfileDataLocal pdl = (CertificateProfileDataLocal) i.next(); returnval.put(pdl.getCertificateProfileName(), pdl.getCertificateProfile()); } } } catch (FinderException e) { } return returnval; }
4109 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4109/31d6aba7523c1171d3298c2d2f27b963fa299bfc/LocalCertificateStoreSessionBean.java/clean/src/java/se/anatom/ejbca/ca/store/LocalCertificateStoreSessionBean.java
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public org.quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { org.quickfix.field.AllowableOneSidednessPct value = new org.quickfix.field.AllowableOneSidednessPct();
public quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { quickfix.field.AllowableOneSidednessPct value = new quickfix.field.AllowableOneSidednessPct();
public org.quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { org.quickfix.field.AllowableOneSidednessPct value = new org.quickfix.field.AllowableOneSidednessPct(); getField(value); return value; }
8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/NewOrderList.java/clean/src/java/src/quickfix/fix44/NewOrderList.java
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public void setConfig(ConfigContext ctx, ConfigElement elt) { if ( elt.getDefinition().getToken().equals("position_transform_filter") ) { mContext = ctx; mElement = elt; PropertyDefinition prop_def = mElement.getDefinition().getPropertyDefinition("device_units"); Map dev_unit_map = prop_def.getEnums(); elt.addConfigElementListener(new ElementListener()); mSensorUnitsEditor = new PropertyEditorPanel(ctx, elt.getProperty("device_units", 0), elt.getDefinition().getPropertyDefinition("device_units"), elt, 0, Color.white); mCustomUnitsEditor = new PropertyEditorPanel(ctx, elt.getProperty("custom_scale", 0), elt.getDefinition().getPropertyDefinition("custom_scale"), elt, 0, Color.white); boolean enable_custom = ((Number) elt.getProperty("device_units", 0)).floatValue() == 0.0; mCustomUnitsEditor.setEnabled(enable_custom); mTrackerXPosField.setValue(elt.getProperty("pre_translate", 0)); mTrackerYPosField.setValue(elt.getProperty("pre_translate", 1)); mTrackerZPosField.setValue(elt.getProperty("pre_translate", 2)); double x_rot = ((Number) elt.getProperty("pre_rotation", 0)).doubleValue(); double y_rot = ((Number) elt.getProperty("pre_rotation", 1)).doubleValue(); double z_rot = ((Number) elt.getProperty("pre_rotation", 2)).doubleValue(); mTrackerXRotSpinner.setValue(new Double(x_rot)); mTrackerYRotSpinner.setValue(new Double(y_rot)); mTrackerZRotSpinner.setValue(new Double(z_rot)); // This is slow, but I don't think that there is a better way to do // it. int i; for ( i = 0; i < mCoordFrames.length; ++i ) { if ( mCoordFrames[i].getXRot() == x_rot && mCoordFrames[i].getYRot() == y_rot && mCoordFrames[i].getZRot() == z_rot ) { mTrackerCoordChooser.setSelectedIndex(i); break; } } System.out.println("[TrackerTransformPanel.setConfig()] i == " + i); System.out.println("[TrackerTransformPanel.setConfig()] mCoordFrames.length == " + mCoordFrames.length); // If the search through mCoordFrames turned up no match, then we // will enable the manual rotation editing just to be friendly. if ( i == mCoordFrames.length ) { mTrackerManualRotButton.setSelected(true); } try { jbInit(); } catch(Exception ex) { ex.printStackTrace(); } // The change listener should be added after the spinners are fully // set up. mTrackerXRotSpinner.addChangeListener(this); mTrackerYRotSpinner.addChangeListener(this); mTrackerZRotSpinner.addChangeListener(this); } else { throw new IllegalArgumentException("Cannot handle config element " + "of type '" + elt.getDefinition().getToken() + "'"); } }
7933 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7933/464c2d31d6ece4aee56742be40bc70c603b9a8a2/TransmitterTransformPanel.java/clean/modules/vrjuggler/vrjconfig/commoneditors/org/vrjuggler/vrjconfig/commoneditors/TransmitterTransformPanel.java
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super(arguments, outStream); } protected void systemExit() { throw new IllegalStateException("Real CommandlineParser would perform " + "System.exit() because of a command line option error.");
super(new Main(System.in, out, err), arguments);
public void testParsingWithDashDash() { class TestableCommandlineParser extends CommandlineParser { public TestableCommandlineParser(String[] arguments) { super(arguments, outStream); } protected void systemExit() { throw new IllegalStateException("Real CommandlineParser would perform " + "System.exit() because of a command line option error."); } } CommandlineParser c = new TestableCommandlineParser(new String[] { "-I", "someLoadPath", "--", "simple.rb", "-v", "--version" }); assertEquals("someLoadPath", c.loadPaths().get(0)); assertEquals("simple.rb",c.getScriptFileName()); assertEquals("simple.rb", c.displayedFileName()); assertTrue("Should not be verbose. The -v flag should be a parameter to the script, not the jruby interpreter", !c.isVerbose()); assertEquals("Script should have two parameters",2,c.getScriptArguments().length); assertEquals("-v",c.getScriptArguments()[0]); assertEquals("--version",c.getScriptArguments()[1]); }
47134 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47134/b4a189a27604d62c317938f16a124fb9dab1e94a/TestCommandlineParser.java/clean/test/org/jruby/test/TestCommandlineParser.java
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Set pks = PrimaryKeyUtil.getPrimaryKeyFields(cld.getModel(),
Set pks = PrimaryKeyUtil.getPrimaryKeyFields(fd.getClassDescriptor().getModel(),
public Map getKeyAttributes() throws Exception { if (keyAttributes == null) { keyAttributes = new HashMap(); Set pks = PrimaryKeyUtil.getPrimaryKeyFields(cld.getModel(), proxy.getObject().getClass()); for (Iterator i = pks.iterator(); i.hasNext();) { FieldDescriptor fd = (FieldDescriptor) i.next(); if (fd.isAttribute()) { Object fieldValue = TypeUtil.getFieldValue(proxy.getObject(), fd.getName()); keyAttributes.put(fd.getName(), fieldValue); } } } return keyAttributes; }
7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/20ded25018065120134a825d92e4884635a9d50a/DisplayReference.java/clean/intermine/web/main/src/org/intermine/web/results/DisplayReference.java
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return b0.compareTo(b1) > 0;
return v0 > v1;
public Calc compileCall(FunCall call, ExpCompiler compiler) { final StringCalc calc0 = compiler.compileString(call.getArg(0)); final StringCalc calc1 = compiler.compileString(call.getArg(1)); return new AbstractBooleanCalc(call, new Calc[] {calc0, calc1}) { public boolean evaluateBoolean(Evaluator evaluator) { final String b0 = calc0.evaluateString(evaluator); final String b1 = calc1.evaluateString(evaluator); if (b0 == null || b1 == null) { return BooleanNull; } return b0.compareTo(b1) > 0; } }; }
4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/5aca340e1cdbb6179077d96383341db48f0997be/BuiltinFunTable.java/buggy/src/main/mondrian/olap/fun/BuiltinFunTable.java
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return (node != null) && (node.getLabel(getLanguage()) != null);
exists = (node != null) && (node.getLabel(getLanguage()) != null);
public boolean exists() throws DocumentException { SiteTree sitetree; try { sitetree = getPublication().getSiteTree(getArea()); SiteTreeNode node = sitetree.getNode(getId()); return (node != null) && (node.getLabel(getLanguage()) != null); } catch (SiteTreeException e) { throw new DocumentException(e); } }
45951 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45951/7f8f3bf99e36e034f17d4fd6d23e2c7c51b233a6/DefaultDocument.java/clean/src/java/org/apache/lenya/cms/publication/DefaultDocument.java
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Xpp3Dom testResources = dom.getChild( "sources" );
Xpp3Dom testResources = dom.getChild( "testResources" );
public ArchetypeDescriptor build( Reader reader ) throws Exception { ArchetypeDescriptor descriptor = new ArchetypeDescriptor(); Xpp3Dom dom = Xpp3DomBuilder.build( reader ); descriptor.setId( dom.getChild( "id" ).getValue() ); Xpp3Dom sources = dom.getChild( "sources" ); if ( sources != null ) { Xpp3Dom[] sourceList = sources.getChildren( "source" ); for ( int i = 0; i < sourceList.length; i++ ) { descriptor.addSource( sourceList[i].getValue() ); } } Xpp3Dom resources = dom.getChild( "resources" ); if ( resources != null ) { Xpp3Dom[] resourceList = resources.getChildren( "source" ); for ( int i = 0; i < resourceList.length; i++ ) { descriptor.addResource( resourceList[i].getValue() ); } } Xpp3Dom testSources = dom.getChild( "testSources" ); if ( testSources != null ) { Xpp3Dom[] testSourceList = testSources.getChildren( "source" ); for ( int i = 0; i < testSourceList.length; i++ ) { descriptor.addTestSource( testSourceList[i].getValue() ); } } Xpp3Dom testResources = dom.getChild( "sources" ); if ( testResources != null ) { Xpp3Dom[] testResourceList = sources.getChildren( "source" ); for ( int i = 0; i < testResourceList.length; i++ ) { descriptor.addTestResource( testResourceList[i].getValue() ); } } return descriptor; }
47050 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47050/244f6070e8f4a4ec0a89899b97e5a47b5a0eee3e/ArchetypeDescriptorBuilder.java/buggy/maven-archetype/maven-archetype-core/src/main/java/org/apache/maven/archetype/descriptor/ArchetypeDescriptorBuilder.java
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visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); }
visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); }
public final void visit_ifnonnull(int address) { visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); }
1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/4c9e1b93fdcd3878abf615621ec6a36bf839ab10/X86BytecodeVisitor.java/buggy/core/src/core/org/jnode/vm/x86/compiler/l1a/X86BytecodeVisitor.java
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dbflags = xdr.xdrDecodeInt();
public void xdrDecode(XdrDecodingStream xdr) throws OncRpcException, IOException { status = xdr.xdrDecodeInt(); dbcl_id = xdr.xdrDecodeInt(); type = xdr.xdrDecodeInt(); dbflags = xdr.xdrDecodeInt(); lorder = xdr.xdrDecodeInt(); }
2921 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2921/d03f220fde879509cab2ac1c73b71b7efb52b737/__db_open_reply.java/clean/db/rpc_server/java/gen/__db_open_reply.java
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isDragging = false;
public void mousePressed(MouseEvent event) { // Check to see that the slider is enabled before proceeeding. if (!slider.isEnabled()) return; // Get mouse x, y positions. currentMouseX = event.getX(); currentMouseY = event.getY(); // If the slider has {@link #setFocusEnabled} true then // request focus. if (slider.isRequestFocusEnabled()) slider.requestFocus(); // Check to see if the thumb was clicked. if (thumbRect.contains(currentMouseX, currentMouseY)) { // Depending on orientation of the mouse. switch (slider.getOrientation()) { case JSlider.HORIZONTAL: offset = currentMouseX-thumbRect.x; break; case JSlider.VERTICAL: offset = currentMouseY-thumbRect.y; } isDragging = true; return; } if (showArrows) { if (minArrowRect.contains(currentMouseX, currentMouseY)) { int value = slider.getValue(); if (value > slider.getMinimum()) { scrollTimer.stop(); scrollListener.setScrollByBlock(false); scrollListener.setDirection(OneKnobSliderUI.NEGATIVE_SCROLL); scrollTimer.start(); slider.repaint(); } isDragging = false; return; } if (maxArrowRect.contains(currentMouseX, currentMouseY)) { int value = slider.getValue(); if (value < slider.getMaximum()) { scrollTimer.stop(); scrollListener.setScrollByBlock(false); scrollListener.setDirection( OneKnobSliderUI.POSITIVE_SCROLL); scrollTimer.start(); slider.repaint(); } isDragging = false; return; } } // We have clicked outside of the thumb and onto the track. isDragging = false; slider.repaint(); }
13273 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13273/1c6472710140ce7700bb1cb3c30b584ae3057a53/OneKnobSliderUI.java/clean/SRC/org/openmicroscopy/shoola/util/ui/slider/OneKnobSliderUI.java
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createChannelList(); DataService.getInstance().subscribedChannelsChanged(); mProgramTableModel.setShownChannels(ChannelList.getSubscribedChannels()); mDefaultToolBar.updateChannelChooser();
onSubscribedChannelsChanged();
public void showSettingsDialog() { SettingsDialog dlg = new SettingsDialog(this); dlg.centerAndShow(); if (Settings.settingHasChanged(new String[]{"font.programtitle","font.programinfo","font.programtime","font.channelname","usedefaultfonts"})) { util.ui.ProgramPanel.updateFonts(); tvbrowser.ui.programtable.ChannelPanel.fontChanged(); mProgramTableScrollPane.getProgramTable().fontChanged(); mProgramTableScrollPane.tableDataChanged(); mProgramTableScrollPane.getProgramTable().tableDataChanged(); } if (Settings.settingHasChanged(new String[]{"lookandfeel","skinLF.themepack","skinLF.enabled"})) { TVBrowser.updateLookAndFeel(); } if (Settings.settingHasChanged(new String[]{"applicationskin","useapplicationskin"})) { updateApplicationSkin(); } if (Settings.settingHasChanged(new String[]{"table.layout"})) { mProgramTableScrollPane.getProgramTable().setProgramTableLayout(null); } if (Settings.settingHasChanged(new String[]{"tablebgmode","tablebackground"})) { mProgramTableScrollPane.getProgramTable().updateBackground(); } if (Settings.settingHasChanged(new String[]{"updatebutton","preferencesbutton", "buttontype","hiddenbuttonplugins","plugins"})) { mDefaultToolBar.updateButtons(); } if (Settings.settingHasChanged(new String[]{"timebutton"})) { mDateTimeToolBar.updateButtons(); } if (Settings.settingHasChanged(new String[]{"subscribedchannels"})) { createChannelList(); DataService.getInstance().subscribedChannelsChanged(); mProgramTableModel.setShownChannels(ChannelList.getSubscribedChannels()); mDefaultToolBar.updateChannelChooser(); } if (Settings.settingHasChanged(new String[]{"programtable.endofday","programtable.startofday"})) { mProgramTableModel.setTimeRange(Settings.getProgramTableStartOfDay(),Settings.getProgramTableEndOfDay()); } if (Settings.settingHasChanged(new String[]{"columnwidth"})) { util.ui.ProgramPanel.updateColumnWidth(); mProgramTableScrollPane.setColumnWidth(Settings.getColumnWidth()); mProgramTableScrollPane.updateChannelPanel(); mProgramTableScrollPane.getProgramTable().updateLayout(); } }
9266 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9266/f717668ba6c889d9c3d03a8bd14e4f72867eff11/MainFrame.java/clean/tvbrowser/src/tvbrowser/ui/mainframe/MainFrame.java
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}
} else { addSource(); }
public void connectGraph() { if (ccStyleInit) { if (outputType != null) { output = new Channel(outputType, pushAmount); } if (inputType != null) { if (peekAmount == -1) peekAmount = popAmount; input = new Channel(inputType, popAmount, peekAmount); } } else if (multiPhaseStyle) { if (inType != null) { // if only one steady phase, pass the rates to the // Channel (for Eclipse debugger to find it there). if (initPhases.size()==0 && steadyPhases.size()==1) { PhaseInfo pi = (PhaseInfo)steadyPhases.get(0); input = new Channel(inType, pi.o, pi.e); } else { input = new Channel(inType); } } if (outType != null) { // if only one steady phase, pass the rates to the // Channel (for Eclipse debugger to find it there). if (initPhases.size()==0 && steadyPhases.size()==1) { PhaseInfo pi = (PhaseInfo)steadyPhases.get(0); output = new Channel(outType, pi.u); } else { output = new Channel(outType); } } } Channel myInput = getInputChannel(); Channel myOutput = getOutputChannel(); if (myOutput != null) { myOutput.setSource(this); } else { addSink(); } if (myInput != null) { myInput.setSink(this); } addFilter(); initCount(); }
5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/07b4d082fc19f84d45b15d0983d25116e2fec607/Filter.java/buggy/streams/src/streamit/library/Filter.java
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( this, contentHandler, response, isPortlet, haveScriptAncestor );
( this, contentHandler, response, isPortlet, scriptDepth );
private State handleForm ( final String ns, final String lnam, final String qnam, final Attributes atts ) throws SAXException { final State ret; if ( "form".equals( lnam ) ) { final AttributesImpl newAtts = XMLUtils.getAttribsFromDefaultNamespace( atts ); final String actn = newAtts.getValue( "", ACTION_ATT ); final String newActn; if ( actn == null ) { newActn = response.rewriteActionURL( "" ); newAtts.addAttribute( "", ACTION_ATT, ACTION_ATT, "", newActn ); } else { final int idx = newAtts.getIndex( "", ACTION_ATT ); newActn = response.rewriteActionURL( actn ); newAtts.setValue( idx, newActn ); } if ( atts.getValue( "", METHOD_ATT ) == null && isPortlet ) { newAtts.addAttribute( "", METHOD_ATT, METHOD_ATT, "", "post" ); } final String isPrtltFrm = atts.getValue( "http://orbeon.org/oxf/xml/portlet", "is-portlet-form" ); if ( "true".equals( isPrtltFrm ) ) { ret = new NoRewriteState ( this, contentHandler, response, isPortlet, haveScriptAncestor ); } else { ret = this; } contentHandler.startElement( ns, lnam, qnam, newAtts ); } else { ret = null; } return ret; }
51410 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51410/f2f1624fa441b872f82bafeeaf06211c19ccd097/XHTMLRewrite.java/buggy/src/java/org/orbeon/oxf/processor/converter/XHTMLRewrite.java
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private void updateModule(IProject project) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProject[] earProjects = J2EEProjectUtilities.getReferencingEARProjects(project); if (earProjects.length == 0) { removeContainerFromModuleIfNecessary(project); return; } container = addContainerToModuleIfNecessary(project); if (container != null) { ((J2EEComponentClasspathContainer) container).update();
private void updateModule(final IProject project) { final IWorkspaceRunnable workspaceRunnable = new IWorkspaceRunnable() { public void run(IProgressMonitor monitor) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProject[] earProjects = J2EEProjectUtilities.getReferencingEARProjects(project); if (earProjects.length == 0) { removeContainerFromModuleIfNecessary(project); return; } container = addContainerToModuleIfNecessary(project); if (container != null) { ((J2EEComponentClasspathContainer) container).update(); } } }; final IWorkspace workspace = ResourcesPlugin.getWorkspace(); if (workspace.isTreeLocked()) { Runnable r = new Runnable() { public void run() { while (workspace.isTreeLocked()) { try { Thread.sleep(10); } catch (InterruptedException e) { } } try { workspace.run(workspaceRunnable, workspace.getRoot(), IWorkspace.AVOID_UPDATE, new NullProgressMonitor()); } catch (CoreException e) { Logger.getLogger().logError(e); } } }; Thread t = new Thread(r); t.start(); } else { try { workspace.run(workspaceRunnable, workspace.getRoot(), IWorkspace.AVOID_UPDATE, new NullProgressMonitor()); } catch (CoreException e) { Logger.getLogger().logError(e); }
private void updateModule(IProject project) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProject[] earProjects = J2EEProjectUtilities.getReferencingEARProjects(project); if (earProjects.length == 0) { removeContainerFromModuleIfNecessary(project); return; } container = addContainerToModuleIfNecessary(project); if (container != null) { ((J2EEComponentClasspathContainer) container).update(); } }
8196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8196/b15e3b450868f44220bf4cca43e115caad4fd26c/J2EEComponentClasspathUpdater.java/clean/plugins/org.eclipse.jst.j2ee/common/org/eclipse/jst/j2ee/internal/common/classpath/J2EEComponentClasspathUpdater.java
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public void set(org.quickfix.field.DistribPaymentMethod value)
public void set(quickfix.field.DistribPaymentMethod value)
public void set(org.quickfix.field.DistribPaymentMethod value) { setField(value); }
8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/RegistrationInstructions.java/buggy/src/java/src/quickfix/fix44/RegistrationInstructions.java
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return new ConversionSet(valueMap.entrySet());
return new ConversionMapEntrySet(getRuntime(), valueMap.entrySet());
public Set entrySet() { // TODO: Set.Entry must be wrapped appropriately...? return new ConversionSet(valueMap.entrySet()); }
46258 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46258/b46a9962586a768eaf50113d17bdb4aef7e22000/RubyHash.java/buggy/src/org/jruby/RubyHash.java
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case CONSTRUCTOR_ID:
case Id_constructor:
public Object execMethod (int methodId, IdFunction f, Context cx, Scriptable scope, Scriptable thisObj, Object[] args) throws JavaScriptException { switch (methodId) { case CONSTRUCTOR_ID: return jsConstructor(args, thisObj == null); case Id_toString: return realThis(thisObj, f).jsFunction_toString(); case Id_valueOf: return wrap_boolean(realThis(thisObj, f).jsFunction_valueOf()); } return Scriptable.NOT_FOUND; }
12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/b6331020dcf96bb85dae57ee2a2ce947b6b0477a/NativeBoolean.java/clean/js/rhino/org/mozilla/javascript/NativeBoolean.java
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ParameterBinding rb = getBinding(binding, operationName, resultPartName, com.sun.xml.ws.model.Mode.OUT);
ParameterBinding rb = getBinding(binding, operationName, resultPartName, false, com.sun.xml.ws.model.Mode.OUT);
protected void processRpcMethod(JavaMethod javaMethod, String methodName, WebMethod webMethod, String operationName, Method method, WebService webService) { boolean isOneway = method.isAnnotationPresent(Oneway.class); QName reqElementName = new QName(targetNamespace, operationName); QName resElementName = null; if (!isOneway) { resElementName = new QName(targetNamespace, operationName+RESPONSE); } TypeReference typeRef = new TypeReference(reqElementName, RPC_LIT_PAYLOAD_CLASS, new Annotation[0]); WrapperParameter requestWrapper = new WrapperParameter(typeRef, com.sun.xml.ws.model.Mode.IN, 0); javaMethod.addParameter(requestWrapper); WrapperParameter responseWrapper = null; if (!isOneway) { typeRef = new TypeReference(resElementName, RPC_LIT_PAYLOAD_CLASS, new Annotation[0]); responseWrapper = new WrapperParameter(typeRef, com.sun.xml.ws.model.Mode.OUT, -1); javaMethod.addParameter(responseWrapper); } Class returnType = method.getReturnType(); String resultName = RETURN;//null; String resultTNS = targetNamespace;//null; String resultPartName = resultName; // TODO this needs to be spec'ed QName resultQName = null; boolean isResultHeader = false; WebResult webResult = method.getAnnotation(WebResult.class); if (webResult != null) { if (webResult.name().length() > 0) resultName = webResult.name(); if (webResult.partName().length() > 0) resultPartName = webResult.partName(); else resultPartName = resultName; if (webResult.targetNamespace().length() > 0) resultTNS = webResult.targetNamespace(); isResultHeader = webResult.header(); } if (isResultHeader) resultQName = new QName(resultTNS, resultName); else resultQName = new QName(resultName); if(javaMethod.isAsync()){ returnType = getAsyncReturnType(method, returnType); } if (!isOneway && (returnType != null) && (!returnType.getName().equals("void"))) { Class returnClazz = returnType; Annotation[] rann = method.getAnnotations(); TypeReference rTypeReference = new TypeReference(resultQName, returnType, rann); Parameter returnParameter = new Parameter(rTypeReference, com.sun.xml.ws.model.Mode.OUT, -1); returnParameter.setPartName(resultPartName); if(isResultHeader){ returnParameter.setBinding(new ParameterBinding(SOAPBlock.HEADER)); javaMethod.addParameter(returnParameter); }else{ ParameterBinding rb = getBinding(binding, operationName, resultPartName, com.sun.xml.ws.model.Mode.OUT); returnParameter.setBinding(rb); if(rb.getBinding().isBody() || rb.getBinding().isUnbound()){ responseWrapper.addWrapperChild(returnParameter); }else{ javaMethod.addParameter(returnParameter); } } } //get WebParam Class<?>[] parameterTypes = method.getParameterTypes(); Type[] genericParameterTypes = method.getGenericParameterTypes(); Annotation[][] pannotations = method.getParameterAnnotations(); int pos = 0; QName paramQName = null; for (Class clazzType : parameterTypes) { Parameter param = null; String paramName = ""; String paramNamespace = ""; String partName = null; boolean isHeader = false; if(javaMethod.isAsync() && AsyncHandler.class.isAssignableFrom(clazzType)){ continue; } boolean isHolder = HOLDER_CLASS.isAssignableFrom(clazzType); //set the actual type argument of Holder in the TypeReference if (isHolder) { if (clazzType.getName().equals(Holder.class.getName())) clazzType = Navigator.REFLECTION.erasure(((ParameterizedType)genericParameterTypes[pos]).getActualTypeArguments()[0]); } com.sun.xml.ws.model.Mode paramMode = isHolder ? com.sun.xml.ws.model.Mode.INOUT : com.sun.xml.ws.model.Mode.IN; for (Annotation annotation : pannotations[pos]) { if (annotation.annotationType() == javax.jws.WebParam.class) { javax.jws.WebParam webParam = (javax.jws.WebParam) annotation; paramName = webParam.name(); partName = webParam.partName(); isHeader = webParam.header(); WebParam.Mode mode = webParam.mode(); paramNamespace = webParam.targetNamespace(); if (isHolder && mode == javax.jws.WebParam.Mode.IN) mode = javax.jws.WebParam.Mode.INOUT; paramMode = (mode == javax.jws.WebParam.Mode.IN) ? com.sun.xml.ws.model.Mode.IN : (mode == javax.jws.WebParam.Mode.INOUT) ? com.sun.xml.ws.model.Mode.INOUT : com.sun.xml.ws.model.Mode.OUT; break; } } if (paramName.length() == 0) { paramName = "arg"+pos; } if (!isHeader) { //its rpclit body param, set namespace to "" paramQName = new QName("", paramName); } else { if (paramNamespace.length() == 0) paramNamespace = targetNamespace; paramQName = new QName(paramNamespace, paramName); } typeRef = new TypeReference(paramQName, clazzType, pannotations[pos]); param = new Parameter(typeRef, paramMode, pos++); if(partName == null || (partName.length() == 0)){ partName = paramName; } param.setPartName(partName); if (isHeader) { param.setBinding(new ParameterBinding(SOAPBlock.HEADER)); javaMethod.addParameter(param); } else { ParameterBinding pb = getBinding(binding, operationName, partName, paramMode); param.setBinding(pb); if(pb.getBinding().isBody() || pb.getBinding().isUnbound()){ if (!paramMode.equals(com.sun.xml.ws.model.Mode.OUT)) { requestWrapper.addWrapperChild(param); } if (!paramMode.equals(com.sun.xml.ws.model.Mode.IN)) { if (isOneway) { throw new RuntimeModelerException("runtime.modeler.oneway.operation.no.out.parameters", new Object[] {portClass.getCanonicalName(), methodName}); } responseWrapper.addWrapperChild(param); } }else { javaMethod.addParameter(param); } } } processExceptions(javaMethod, method); }
9667 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9667/6200604565355885ba65f291977a296dc68e9045/RuntimeModeler.java/buggy/jaxws-ri/rt/src/com/sun/xml/ws/modeler/RuntimeModeler.java
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myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path, false);
myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path);
public void openDir(String path, long revision) throws SVNException { DebugLog.log("open dir"); myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path, false); myCurrentDirectory.myBaseProperties = new HashMap(); myRepos.getDir(path, myRevision, myCurrentDirectory.myBaseProperties, (Collection) null); }
2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/6c2a9b21ad94c8ea1ae6d43c84b3c1225fe4e460/SVNRemoteDiffEditor.java/clean/javasvn/src/org/tmatesoft/svn/core/internal/wc/SVNRemoteDiffEditor.java
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following.push(FOLLOW_predicate_in_constraints1654);
following.push(FOLLOW_predicate_in_constraints1658);
public List constraints() throws RecognitionException { List constraints; constraints = new ArrayList(); try { // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:668:17: ( opt_eol ( constraint[constraints] | predicate[constraints] ) ( opt_eol ',' opt_eol ( constraint[constraints] | predicate[constraints] ) )* opt_eol ) // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:668:17: opt_eol ( constraint[constraints] | predicate[constraints] ) ( opt_eol ',' opt_eol ( constraint[constraints] | predicate[constraints] ) )* opt_eol { following.push(FOLLOW_opt_eol_in_constraints1628); opt_eol(); following.pop(); // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:669:17: ( constraint[constraints] | predicate[constraints] ) int alt46=2; int LA46_0 = input.LA(1); if ( LA46_0==EOL||LA46_0==15 ) { alt46=1; } else if ( LA46_0==ID ) { int LA46_2 = input.LA(2); if ( LA46_2==30 ) { int LA46_3 = input.LA(3); if ( LA46_3==ID ) { int LA46_8 = input.LA(4); if ( LA46_8==50 ) { alt46=2; } else if ( LA46_8==EOL||LA46_8==15||(LA46_8>=22 && LA46_8<=23)||(LA46_8>=40 && LA46_8<=47) ) { alt46=1; } else { NoViableAltException nvae = new NoViableAltException("669:17: ( constraint[constraints] | predicate[constraints] )", 46, 8, input); throw nvae; } } else if ( LA46_3==EOL||LA46_3==15 ) { alt46=1; } else { NoViableAltException nvae = new NoViableAltException("669:17: ( constraint[constraints] | predicate[constraints] )", 46, 3, input); throw nvae; } } else if ( LA46_2==EOL||LA46_2==15||(LA46_2>=22 && LA46_2<=23)||(LA46_2>=40 && LA46_2<=47) ) { alt46=1; } else { NoViableAltException nvae = new NoViableAltException("669:17: ( constraint[constraints] | predicate[constraints] )", 46, 2, input); throw nvae; } } else { NoViableAltException nvae = new NoViableAltException("669:17: ( constraint[constraints] | predicate[constraints] )", 46, 0, input); throw nvae; } switch (alt46) { case 1 : // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:669:18: constraint[constraints] { following.push(FOLLOW_constraint_in_constraints1633); constraint(constraints); following.pop(); } break; case 2 : // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:669:42: predicate[constraints] { following.push(FOLLOW_predicate_in_constraints1636); predicate(constraints); following.pop(); } break; } // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:670:17: ( opt_eol ',' opt_eol ( constraint[constraints] | predicate[constraints] ) )* loop48: do { int alt48=2; alt48 = dfa48.predict(input); switch (alt48) { case 1 : // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:670:19: opt_eol ',' opt_eol ( constraint[constraints] | predicate[constraints] ) { following.push(FOLLOW_opt_eol_in_constraints1644); opt_eol(); following.pop(); match(input,22,FOLLOW_22_in_constraints1646); following.push(FOLLOW_opt_eol_in_constraints1648); opt_eol(); following.pop(); // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:670:39: ( constraint[constraints] | predicate[constraints] ) int alt47=2; int LA47_0 = input.LA(1); if ( LA47_0==EOL||LA47_0==15 ) { alt47=1; } else if ( LA47_0==ID ) { int LA47_2 = input.LA(2); if ( LA47_2==30 ) { int LA47_3 = input.LA(3); if ( LA47_3==ID ) { int LA47_8 = input.LA(4); if ( LA47_8==50 ) { alt47=2; } else if ( LA47_8==EOL||LA47_8==15||(LA47_8>=22 && LA47_8<=23)||(LA47_8>=40 && LA47_8<=47) ) { alt47=1; } else { NoViableAltException nvae = new NoViableAltException("670:39: ( constraint[constraints] | predicate[constraints] )", 47, 8, input); throw nvae; } } else if ( LA47_3==EOL||LA47_3==15 ) { alt47=1; } else { NoViableAltException nvae = new NoViableAltException("670:39: ( constraint[constraints] | predicate[constraints] )", 47, 3, input); throw nvae; } } else if ( LA47_2==EOL||LA47_2==15||(LA47_2>=22 && LA47_2<=23)||(LA47_2>=40 && LA47_2<=47) ) { alt47=1; } else { NoViableAltException nvae = new NoViableAltException("670:39: ( constraint[constraints] | predicate[constraints] )", 47, 2, input); throw nvae; } } else { NoViableAltException nvae = new NoViableAltException("670:39: ( constraint[constraints] | predicate[constraints] )", 47, 0, input); throw nvae; } switch (alt47) { case 1 : // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:670:40: constraint[constraints] { following.push(FOLLOW_constraint_in_constraints1651); constraint(constraints); following.pop(); } break; case 2 : // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:670:64: predicate[constraints] { following.push(FOLLOW_predicate_in_constraints1654); predicate(constraints); following.pop(); } break; } } break; default : break loop48; } } while (true); following.push(FOLLOW_opt_eol_in_constraints1662); opt_eol(); following.pop(); } } catch (RecognitionException re) { reportError(re); recover(input,re); } finally { } return constraints; }
5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/7f81b86a0f548bd02b09afc74b46454cdf158154/RuleParser.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParser.java
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jj_la1[10] = jj_gen;
jj_la1[12] = jj_gen;
final public void nonOpOrTerm() throws ParseException { label_7: while (true) { if (jj_2_3(2)) { ; } else { break label_7; } switch ((jj_ntk==-1)?jj_ntk():jj_ntk) { case WHITE: jj_consume_token(WHITE); break; case COLON: case SLASH: case DOT: case ATSIGN: case APOSTROPHE: nonOpInfix(); break; case PLUS: case MINUS: switch ((jj_ntk==-1)?jj_ntk():jj_ntk) { case PLUS: jj_consume_token(PLUS); break; case MINUS: jj_consume_token(MINUS); break; default: jj_la1[10] = jj_gen; jj_consume_token(-1); throw new ParseException(); } nonTerm(); break; default: jj_la1[11] = jj_gen; jj_consume_token(-1); throw new ParseException(); } } }
57484 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57484/0faf643f0efa6f2ad848fed686443d8e4c4ad978/NutchAnalysis.java/clean/src/java/org/apache/nutch/analysis/NutchAnalysis.java
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public Identity(String name, Map<String, Object> attrs) { super(attrs, null); mName = name;
public Identity(String name, String id, Map<String, Object> attrs) { super(name, id, attrs, null);
public Identity(String name, Map<String, Object> attrs) { super(attrs, null); mName = name; }
6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/ccffcc86bc776010089ae5cee350f389fe08da26/Identity.java/clean/ZimbraServer/src/java/com/zimbra/cs/account/Identity.java
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borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')");
borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')");
private void renderBorder(RenderContext rc, Element windowDivElement, WindowPane windowPane) { FillImageBorder border = (FillImageBorder) windowPane.getRenderProperty(WindowPane.PROPERTY_BORDER, DEFAULT_BORDER); Color borderColor = border.getColor(); Insets borderInsets = border.getBorderInsets() == null ? new Insets(0) : border.getBorderInsets(); Document document = rc.getServerMessage().getDocument(); String elementId = ContainerInstance.getElementId(windowPane); boolean resizable = ((Boolean) windowPane.getRenderProperty(WindowPane.PROPERTY_RESIZABLE, Boolean.TRUE)).booleanValue(); boolean renderPositioningBothSides = !rc.getContainerInstance().getClientProperties() .getBoolean(ClientProperties.QUIRK_CSS_POSITIONING_ONE_SIDE_ONLY); boolean renderSizeExpression = !renderPositioningBothSides && rc.getContainerInstance().getClientProperties() .getBoolean(ClientProperties.PROPRIETARY_IE_CSS_EXPRESSIONS_SUPPORTED); int borderTopPixels = ExtentRender.toPixels(borderInsets.getTop(), 0); int borderLeftPixels = ExtentRender.toPixels(borderInsets.getLeft(), 0); int borderRightPixels = ExtentRender.toPixels(borderInsets.getRight(), 0); int borderBottomPixels = ExtentRender.toPixels(borderInsets.getBottom(), 0); int borderVerticalPixels = borderTopPixels + borderBottomPixels; int borderHorizontalPixels = borderLeftPixels + borderRightPixels; // Top Left Corner Element borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_tl"); CssStyle borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("top", "0px"); borderCssStyle.setAttribute("left", "0px"); borderCssStyle.setAttribute("height", borderTopPixels + "px"); borderCssStyle.setAttribute("width", borderLeftPixels + "px"); if (resizable) { borderCssStyle.setAttribute("cursor", "nw-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_TOP_LEFT, border.getFillImage(FillImageBorder.TOP_LEFT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Top Side borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_t"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("top", "0px"); borderCssStyle.setAttribute("left", borderLeftPixels + "px"); borderCssStyle.setAttribute("height", borderTopPixels + "px"); if (renderPositioningBothSides) { borderCssStyle.setAttribute("right", borderRightPixels + "px"); } else if (renderSizeExpression) { borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')"); } if (resizable) { borderCssStyle.setAttribute("cursor", "n-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_TOP, border.getFillImage(FillImageBorder.TOP), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Top Right Corner borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_tr"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("top", "0px"); borderCssStyle.setAttribute("right", "0px"); borderCssStyle.setAttribute("height", borderTopPixels + "px"); borderCssStyle.setAttribute("width", borderRightPixels + "px"); if (resizable) { borderCssStyle.setAttribute("cursor", "ne-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_TOP_RIGHT, border.getFillImage(FillImageBorder.TOP_RIGHT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Left Side borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_l"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("top", borderTopPixels + "px"); borderCssStyle.setAttribute("left", "0px"); borderCssStyle.setAttribute("width", borderLeftPixels + "px"); if (renderPositioningBothSides) { borderCssStyle.setAttribute("bottom", borderRightPixels + "px"); } else if (renderSizeExpression) { borderCssStyle.setAttribute("height", "expression((document.getElementById('" + elementId + "').clientHeight-" + (borderVerticalPixels) + ")+'px')"); } if (resizable) { borderCssStyle.setAttribute("cursor", "w-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_LEFT, border.getFillImage(FillImageBorder.LEFT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Right Side borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_r"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("top", borderTopPixels + "px"); borderCssStyle.setAttribute("right", "0px"); borderCssStyle.setAttribute("width", borderRightPixels + "px"); if (renderPositioningBothSides) { borderCssStyle.setAttribute("bottom", borderRightPixels + "px"); } else if (renderSizeExpression) { borderCssStyle.setAttribute("height", "expression((document.getElementById('" + elementId + "').clientHeight-" + (borderVerticalPixels) + ")+'px')"); } if (resizable) { borderCssStyle.setAttribute("cursor", "e-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_RIGHT, border.getFillImage(FillImageBorder.RIGHT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Bottom Left Corner borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_bl"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("bottom", "0px"); borderCssStyle.setAttribute("left", "0px"); borderCssStyle.setAttribute("height", borderBottomPixels + "px"); borderCssStyle.setAttribute("width", borderLeftPixels + "px"); if (resizable) { borderCssStyle.setAttribute("cursor", "sw-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_BOTTOM_LEFT, border.getFillImage(FillImageBorder.BOTTOM_LEFT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Bottom Side borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_b"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("bottom", "0px"); borderCssStyle.setAttribute("left", borderLeftPixels + "px"); borderCssStyle.setAttribute("height", borderBottomPixels + "px"); if (renderPositioningBothSides) { borderCssStyle.setAttribute("right", borderRightPixels + "px"); } else if (renderSizeExpression) { borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')"); } if (resizable) { borderCssStyle.setAttribute("cursor", "s-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_BOTTOM, border.getFillImage(FillImageBorder.BOTTOM), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); // Bottom Right Side borderDivElement = document.createElement("div"); borderDivElement.setAttribute("id", elementId + "_border_br"); borderCssStyle = new CssStyle(); ColorRender.renderToStyle(borderCssStyle, null, borderColor); borderCssStyle.setAttribute("position", "absolute"); borderCssStyle.setAttribute("bottom", "0px"); borderCssStyle.setAttribute("right", "0px"); borderCssStyle.setAttribute("height", borderBottomPixels + "px"); borderCssStyle.setAttribute("width", borderRightPixels + "px"); if (resizable) { borderCssStyle.setAttribute("cursor", "se-resize"); } FillImageRender.renderToStyle(borderCssStyle, rc, this, windowPane, IMAGE_ID_BORDER_BOTTOM_RIGHT, border.getFillImage(FillImageBorder.BOTTOM_RIGHT), false); borderDivElement.setAttribute("style", borderCssStyle.renderInline()); windowDivElement.appendChild(borderDivElement); ServerMessage serverMessage = rc.getServerMessage(); if (resizable) { EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_tl", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_t", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_tr", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_l", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_r", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_bl", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_b", "EchoWindowPane.windowResizeMouseDown"); EventUpdate.createEventAdd(serverMessage, "mousedown", elementId + "_border_br", "EchoWindowPane.windowResizeMouseDown"); } }
45635 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45635/0e16a2d76781ba8685883747d0d8f1c409e05d2f/WindowPanePeer.java/clean/src/webcontainer/java/nextapp/echo2/webcontainer/syncpeer/WindowPanePeer.java
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throw new MojoExecutionException( "This project is a snapshot (" + project.getVersion() + "). It appears that the release version has not been committed." );
parent.setVersion( incrementedVersion );
private void transformPomToSnapshotVersionPom( MavenProject project ) throws MojoExecutionException { if ( !getReleaseProgress().verifyCheckpoint( ReleaseProgressTracker.CP_POM_TRANSORMED_FOR_DEVELOPMENT ) ) { if ( isSnapshot( project.getVersion() ) ) { throw new MojoExecutionException( "This project is a snapshot (" + project.getVersion() + "). It appears that the release version has not been committed." ); } Model model = project.getOriginalModel(); ProjectVersionResolver versionResolver = getVersionResolver(); Parent parent = model.getParent(); //Rewrite parent version if ( parent != null ) { String incrementedVersion = versionResolver.getResolvedVersion( parent.getGroupId(), parent .getArtifactId() ); if ( incrementedVersion != null ) { parent.setVersion( incrementedVersion ); } } //Rewrite dependencies section List dependencies = model.getDependencies(); if ( dependencies != null ) { for ( Iterator i = dependencies.iterator(); i.hasNext(); ) { Dependency dep = (Dependency) i.next(); String version = versionResolver.getResolvedVersion( dep.getGroupId(), dep.getArtifactId() ); if ( version != null ) { dep.setVersion( version ); } } } //Rewrite plugins section Build build = model.getBuild(); if ( build != null ) { List plugins = build.getPlugins(); if ( plugins != null ) { for ( Iterator i = plugins.iterator(); i.hasNext(); ) { Plugin plugin = (Plugin) i.next(); String version = versionResolver.getResolvedVersion( plugin.getGroupId(), plugin .getArtifactId() ); if ( version != null ) { plugin.setVersion( version ); } } } //Rewrite extensions section List extensions = build.getExtensions(); for ( Iterator i = extensions.iterator(); i.hasNext(); ) { Extension ext = (Extension) i.next(); String version = versionResolver.getResolvedVersion( ext.getGroupId(), ext.getArtifactId() ); if ( version != null ) { ext.setVersion( version ); } } } Reporting reporting = model.getReporting(); if ( reporting != null ) { //Rewrite reports section List reports = reporting.getPlugins(); if ( reports != null ) { for ( Iterator i = reports.iterator(); i.hasNext(); ) { ReportPlugin plugin = (ReportPlugin) i.next(); String version = versionResolver.getResolvedVersion( plugin.getGroupId(), plugin .getArtifactId() ); if ( version != null ) { plugin.setVersion( version ); } } } } Writer writer = null; try { writer = new FileWriter( project.getFile() ); project.writeOriginalModel( writer ); } catch ( IOException e ) { throw new MojoExecutionException( "Cannot write development version of pom to: " + project.getFile(), e ); } finally { IOUtil.close( writer ); } try { getReleaseProgress().checkpoint( basedir, ReleaseProgressTracker.CP_POM_TRANSORMED_FOR_DEVELOPMENT ); } catch ( IOException e ) { getLog().warn( "Error writing checkpoint.", e ); } } }
51807 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51807/625596d32f1138e016cf983748dd893bd640133a/PrepareReleaseMojo.java/clean/maven-release-plugin/src/main/java/org/apache/maven/plugins/release/PrepareReleaseMojo.java
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JComponent toolbar = ActionManager.getInstance().createActionToolbar(ActionPlaces.FILEHISTORY_VIEW_TOOLBAR, group, true).getComponent();
JComponent toolbar = ActionManager.getInstance().createActionToolbar(ActionPlaces.FILEHISTORY_VIEW_TOOLBAR, group, true).getComponent();
public void showActiveHint(Range range, final Editor editor, Point point) { DefaultActionGroup group = new DefaultActionGroup(); final AnAction globalShowNextAction = ActionManager.getInstance().getAction("VcsShowNextChangeMarker"); final AnAction globalShowPrevAction = ActionManager.getInstance().getAction("VcsShowPrevChangeMarker"); final ShowPrevChangeMarkerAction localShowPrevAction = new ShowPrevChangeMarkerAction(getPrevRange(range), this, editor); final ShowNextChangeMarkerAction localShowNextAction = new ShowNextChangeMarkerAction(getNextRange(range), this, editor); JComponent editorComponent = editor.getComponent(); localShowNextAction.registerCustomShortcutSet(localShowNextAction.getShortcutSet(), editorComponent); localShowPrevAction.registerCustomShortcutSet(localShowPrevAction.getShortcutSet(), editorComponent); group.add(localShowPrevAction); group.add(localShowNextAction); localShowNextAction.copyFrom(globalShowNextAction); localShowPrevAction.copyFrom(globalShowPrevAction); group.add(new LineStatusTracker.RollbackAction(this, range, editor)); group.add(new LineStatusTracker.ShowDiffAction(this, range, editor)); final List<AnAction> actionList = (List<AnAction>)editorComponent.getClientProperty(AnAction.ourClientProperty); actionList.remove(globalShowPrevAction); actionList.remove(globalShowNextAction); JComponent toolbar = ActionManager.getInstance().createActionToolbar(ActionPlaces.FILEHISTORY_VIEW_TOOLBAR, group, true).getComponent(); final Color background = ((EditorEx)editor).getBackroundColor(); final Color foreground = editor.getColorsScheme().getColor(EditorColors.CARET_COLOR); toolbar.setBackground(background); toolbar.setBorder(new SideBorder2(foreground, foreground, range.getType() != Range.INSERTED ? null : foreground, foreground, 1)); JPanel component = new JPanel(new BorderLayout()); component.setOpaque(false); JPanel toolbarPanel = new JPanel(new BorderLayout()); toolbarPanel.setOpaque(false); toolbarPanel.add(toolbar, BorderLayout.WEST); component.add(toolbarPanel, BorderLayout.NORTH); if (range.getType() != Range.INSERTED) { DocumentEx doc = (DocumentEx)myUpToDateDocument; EditorImpl uEditor = new EditorImpl(doc, true, myProject); EditorHighlighter highlighter = HighlighterFactory.createHighlighter(myProject, getFileName()); uEditor.setHighlighter(highlighter); EditorFragmentComponent editorFragmentComponent = EditorFragmentComponent.createEditorFragmentComponent(uEditor, range.getUOffset1(), range.getUOffset2(), false, false); component.add(editorFragmentComponent, BorderLayout.CENTER); } LightweightHint lightweightHint = new LightweightHint(component); lightweightHint.addHintListener(new HintListener() { public void hintHidden(EventObject event) { actionList.remove(localShowPrevAction); actionList.remove(localShowNextAction); actionList.add(globalShowPrevAction); actionList.add(globalShowNextAction); } }); HintManager.getInstance().showEditorHint(lightweightHint, editor, point, HintManager.HIDE_BY_ANY_KEY | HintManager.HIDE_BY_TEXT_CHANGE | HintManager.HIDE_BY_OTHER_HINT | HintManager.HIDE_BY_SCROLLING, -1, false); }
56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/a7795a37f1c8eebeea615883fffc7b0f9c34be31/LineStatusTracker.java/clean/source/com/intellij/openapi/vcs/ex/LineStatusTracker.java
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public void parameterDeclarationList() throws RecognitionException { try { // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:17: ( ( parameterDeclaration ( COMMA parameterDeclaration )* )? ) // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:17: ( parameterDeclaration ( COMMA parameterDeclaration )* )? { // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:17: ( parameterDeclaration ( COMMA parameterDeclaration )* )? int alt33=2; int LA33_0 = input.LA(1); if ( LA33_0==IDENT||(LA33_0>=68 && LA33_0<=76)||LA33_0==82 ) { alt33=1; } else if ( LA33_0==RPAREN ) { alt33=2; } else { NoViableAltException nvae = new NoViableAltException("303:17: ( parameterDeclaration ( COMMA parameterDeclaration )* )?", 33, 0, input); throw nvae; } switch (alt33) { case 1 : // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:19: parameterDeclaration ( COMMA parameterDeclaration )* { following.push(FOLLOW_parameterDeclaration_in_parameterDeclarationList1116); parameterDeclaration(); following.pop(); // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:40: ( COMMA parameterDeclaration )* loop32: do { int alt32=2; int LA32_0 = input.LA(1); if ( LA32_0==COMMA ) { alt32=1; } switch (alt32) { case 1 : // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:42: COMMA parameterDeclaration { match(input,COMMA,FOLLOW_COMMA_in_parameterDeclarationList1120); following.push(FOLLOW_parameterDeclaration_in_parameterDeclarationList1122); parameterDeclaration(); following.pop(); } break; default : break loop32; } } while (true); } break; } } } catch (RecognitionException re) { reportError(re); recover(input,re); } finally { } }
31577 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31577/024138fd0e08f5f4cd91a30959fe962d30fec435/JavaParser.java/clean/drools-compiler/src/main/java/org/drools/semantics/java/parser/JavaParser.java
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cNode.setForceCull(useModel); cNode2.setForceCull(!useModel);
cNode.setCullMode(useModel ? Spatial.CULL_ALWAYS : Spatial.CULL_DYNAMIC); cNode2.setCullMode(!useModel ? Spatial.CULL_ALWAYS : Spatial.CULL_DYNAMIC);
protected void simpleUpdate() { if (System.currentTimeMillis() - lastPress > 100) { if (KeyBindingManager .getKeyBindingManager() .isValidCommand("detail_down")) { if (useModel) cNode2.setTargetRecord( (cNode2.getTargetRecord()) + 10); else cNode.setTargetRecord( (cNode.getTargetRecord()) + 25); lastPress = System.currentTimeMillis(); } if (KeyBindingManager .getKeyBindingManager() .isValidCommand("detail_up")) { if (useModel) cNode2.setTargetRecord( (cNode2.getTargetRecord()) - 10); else cNode.setTargetRecord( (cNode.getTargetRecord()) - 25); lastPress = System.currentTimeMillis(); } } if (KeyBindingManager .getKeyBindingManager() .isValidCommand("switch_models", false)) { useModel = !useModel; cNode.setForceCull(useModel); cNode2.setForceCull(!useModel); } }
19503 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19503/4b3ef3571d0832ec40dac8b87005b4342fee8477/TestClodMesh.java/buggy/src/jmetest/renderer/TestClodMesh.java
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Object[] errArgs = { name, clazz.getName() }; throw new PropertyException( Context.getMessage("msg.no.overload", errArgs));
throw PropertyException.withMessage2 ("msg.no.overload", name, clazz.getName());
public void defineFunctionProperties(String[] names, Class clazz, int attributes) throws PropertyException { for (int i=0; i < names.length; i++) { String name = names[i]; Method[] m = FunctionObject.findMethods(clazz, name); if (m == null) { Object[] errArgs = { name, clazz.getName() }; throw new PropertyException( Context.getMessage("msg.method.not.found", errArgs)); } if (m.length > 1) { Object[] errArgs = { name, clazz.getName() }; throw new PropertyException( Context.getMessage("msg.no.overload", errArgs)); } FunctionObject f = new FunctionObject(name, m[0], this); defineProperty(name, f, attributes); } }
12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/e737c6d867e82d4ba7fd00e7e388c9c8da824ff0/ScriptableObject.java/buggy/js/rhino/src/org/mozilla/javascript/ScriptableObject.java
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return _doctypePublic;
return _doctypePublic;
public String getDoctypePublic() { return _doctypePublic; }
1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/af047e33ee4283cd437ffa6760ccff3d3d2bf9ea/OutputFormat.java/buggy/src/org/apache/xml/serialize/OutputFormat.java
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return RubyFloat.newFloat(ruby, cal.getTimeInMillis() / 1000.0);
return RubyFloat.newFloat(ruby, getTimeInMillis() / 1000.0);
public RubyFloat to_f() { return RubyFloat.newFloat(ruby, cal.getTimeInMillis() / 1000.0); }
47984 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47984/1d7a03bf28c697f2c006eafab8faa91982894617/RubyTime.java/clean/org/jruby/RubyTime.java
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SVNUpdateClient client = createSVNUpdateClient(); try { client.doRelocate(new File(path).getAbsoluteFile(), from, to, recurse); } catch (SVNException e) { throwException(e); }
public void relocate(String from, String to, String path, boolean recurse) throws ClientException { // TODO Auto-generated method stub }
2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/abe0d296df0a27ce680a7e50116d15861c0c9f04/SVNClient.java/clean/javasvn/src/org/tigris/subversion/javahl/SVNClient.java
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public void onSuccess(FetchResult result, ClientGetter state) { // TODO ensure it works if(!state.getURI().equals(revocationURI)){ System.out.println("Found "+availableVersion); Logger.normal(this, "Found a new version! (" + availableVersion + ", setting up a new UpdatedVersionAviableUserAlert"); alert.set(availableVersion,true); alert.isValid(true); synchronized(this){ this.cg = state; this.result = result; if(this.isAutoUpdateAllowed) scheduleUpdate(); } }else{ // The key has been blown ! // FIXME: maybe we need a bigger warning message. String msg = null; try { byte[] buf = result.asByteArray(); msg = new String(buf); } catch (Throwable t) { try { Logger.error(this, "Failed to extract result when key blown: "+t, t); System.err.println("Failed to extract result when key blown: "+t); t.printStackTrace(); msg = "Failed to extract result when key blown: "+t; } catch (Throwable t1) { msg = "Internal error after retreiving revocation key"; } } blow(msg); } }
50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/d296236f0c3888b3327dcc9ff86ef0475d1d33dd/NodeUpdater.java/buggy/src/freenet/node/updater/NodeUpdater.java
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DisplayEditor display_editor = new DisplayEditor(); display_editor.setContext(context);
SimDisplayEditor display_editor = new SimDisplayEditor();
public void actionPerformed(ActionEvent evt) { ControlPanel control = (ControlPanel)evt.getSource(); Object value = control.getModel().getElementAt(evt.getID()); String item = (String)value; if (item.equals("D e v i c e s")) { showDevicesPanel(); } else if (item.equals("D i s p l a y")) { CustomEditor editor = CustomEditorRegistry.findEditor("display_window"); editor.setContext(context); pushCurrentBack(editor.getPanel()); } else if (item.equals("S i m u l a t o r")) { DisplayEditor display_editor = new DisplayEditor(); display_editor.setContext(context); pushCurrentBack(display_editor); } else if (item.equals("C l u s t e r")) { JDialog dlg = new JDialog( (Frame)SwingUtilities.getAncestorOfClass(Frame.class, ControlPanelView.this), "Sim Device Editor", true); dlg.getContentPane().setLayout(new BorderLayout()); SimAnalogDeviceEditor editor = new SimAnalogDeviceEditor(context); List chunks = getConfigBroker().getElements(context); ConfigElement device = (ConfigElement)ConfigUtilities.getElementsWithName(chunks, "Analog Simulator").get(0); editor.setDevice(device); dlg.getContentPane().add(editor, BorderLayout.CENTER); dlg.pack(); dlg.setVisible(true); } }
49828 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49828/562266849c8e27d3bda062d7067b73f0d9662a33/ControlPanelView.java/buggy/modules/vrjuggler/vrjconfig/org/vrjuggler/vrjconfig/ControlPanelView.java
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declarator.getNameStartOffset(), declarator.getNameEndOffset(), declarator.getConstructorExpression());
getStartingLine(), declarator.getNameStartOffset(), declarator.getNameEndOffset(), declarator.getNameLine(), declarator.getConstructorExpression());
private IASTVariable createVariableASTNode(Declarator declarator, boolean nested ) throws ASTSemanticException { try { return astFactory.createVariable( scope, nested ? declarator.getOwnedDeclarator().getName() : declarator.getName(), isAuto(), declarator.getInitializerClause(), declarator.getBitFieldExpression(), astFactory.createAbstractDeclaration( constt, volatil, getTypeSpecifier(), declarator.getPointerOperators(), declarator.getArrayModifiers(), null, null), mutable, extern, register, staticc, getStartingOffset(), declarator.getNameStartOffset(), declarator.getNameEndOffset(), declarator.getConstructorExpression()); } catch (ASTSemanticException e) { throw e; } catch (Exception e) { throw new ASTSemanticException(); } }
54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/a38f5c4f0dd1208b4df07f8a318b103677fbf77a/DeclarationWrapper.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/DeclarationWrapper.java
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public Renderer3D(Renderer3DModel r3dm) { this.r3dm = r3dm;
public Renderer3D() { logger = new org.openscience.cdk.tools.LoggingTool(this.getClass().getName()); r3dm = new Renderer3DModel();
public Renderer3D(Renderer3DModel r3dm) { this.r3dm = r3dm; }
1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/5722015c3abb7619509c0ce87eee2db9ebb054f4/Renderer3D.java/buggy/org/openscience/cdk/renderer/Renderer3D.java
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{
{ log.info("Running test Queue19"); runJob(createDefaultDrainJob(queueName)); warmupDestination(queueName, standardMessageSize, false, DeliveryMode.NON_PERSISTENT, Session.AUTO_ACKNOWLEDGE); FillJob fillJob = createDefaultFillJob(queueName, numMessages); fillJob.setDeliveryMode(DeliveryMode.NON_PERSISTENT); fillJob.setMsgSize(standardMessageSize); fillJob.setMf(new BytesMessageMessageFactory()); runJob(fillJob); String selector = "JMSMessageID IS NOT NULL AND NonExistentProperty IS NULL"; BrowserJob job = createDefaultBrowserJob(queueName); job.setSelector(selector); JobTimings result = runJob(job); Execution execution = createExecution("Queue19"); execution.addMeasurement(new Measurement("timeTaken", result.getTestTime())); pm.saveExecution(execution); log.info("Test Queue19 finished");
public void testQueue19() { //TODO No-local perf test }
3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/96f752d06dba37742f7716ee54f31f1982df763e/PerfRunner.java/clean/tests/src/org/jboss/test/messaging/jms/perf/PerfRunner.java
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