rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
|---|---|---|---|---|---|---|
objectClass = defineBootClass("Object", null); | objectClass = new ObjectMetaClass(runtime); topLevelClasses.put("Object", objectClass); | public void initCoreClasses() { objectClass = defineBootClass("Object", null); moduleClass = defineBootClass("Module", objectClass); classClass = defineBootClass("Class", moduleClass); RubyClass metaClass = objectClass.makeMetaClass(classClass, runtime.getCurrentContext().getRubyClass())... | 48300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48300/803c66ee682936beecc8a43fe2cfc90fe5645b22/RubyClasses.java/buggy/src/org/jruby/RubyClasses.java | [
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if (index + length > buffer.length) { throw new IllegalArgumentException(); } String substring = new String(buffer, index, length); index += length; return substring; } | if (index + length > buffer.length) { throw new IllegalArgumentException(); } String substring = new String(buffer, index, length); index += length; return substring; } | public String nextSubstring(int length) { // Cannot get substring off end of buffer if (index + length > buffer.length) { throw new IllegalArgumentException(); } String substring = new String(buffer, index, length); index += length; return substring; } | 45221 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45221/415b1e0db282c02d672a7e34a34a2bea0f69ccb2/Pack.java/buggy/src/org/jruby/util/Pack.java | [
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if (MainFrame.getInstance().getViewType()==MainFrame.VIEW_WEEK) | if (MainFrame.getInstance().getViewType()==MainFrame.VIEW_WEEK) | private void initPeriodPanel() { periodPanel.setLayout(new BorderLayout()); periodChooser = new JDateChooser(); //TODO fire ? periodPanel.add(periodChooser, BorderLayout.CENTER); previousButton = new JButton(Action.getImage("gauche.png")); periodPanel.add(previousButton, BorderLayout.WEST); nextButton = n... | 10961 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10961/a27bc4f7fbf4e2f5bc528eea4696475cdbe93b77/TitleBar.java/buggy/beontimeSwing/src/fr/umlv/smoreau/beontime/client/graphics/parts/TitleBar.java | [
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text = localize( data.getLabelKey( ), data.getLabelText( ) ); | text = localize( data, data.getLabelKey( ), data.getLabelText( ) ); | protected void processData( IDataContent data ) { String helpText = localize( data.getHelpKey( ), data.getHelpText( ) ); data.setHelpText( helpText ); String text = ""; //$NON-NLS-1$ if ( data.getLabelKey( ) != null || data.getLabelText( ) != null ) { text = localize( data.getLabelKey( ), data.getLabelText( ) )... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/6189f889943219017b1a2659f81a3a03e2c19325/LocalizedContentVisitor.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/presentation/LocalizedContentVisitor.java | [
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return RubyFloat.newFloat(getRuntime(), mod); | return RubyFloat.newFloat(getRuntime(), mod); } return callCoerced("%", other); | public RubyNumeric op_mod(RubyNumeric other) { // Modelled after c ruby implementation (java /,% not same as ruby) double x = getDoubleValue(); double y = other.getDoubleValue(); double mod = x % y; if (mod < 0 && y > 0 || mod > 0 && y < 0) { mod += y; } r... | 47619 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47619/803c66ee682936beecc8a43fe2cfc90fe5645b22/RubyFloat.java/clean/src/org/jruby/RubyFloat.java | [
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case 359 : if (DEBUG) { System.out.println("ArrayCreationWithoutArrayInitializer ::= new..."); } | case 360 : if (DEBUG) { System.out.println("ArrayCreationWithoutArrayInitializer ::= new..."); } | protected void consumeRule(int act) { switch ( act ) { case 29 : if (DEBUG) { System.out.println("Type ::= PrimitiveType"); } //$NON-NLS-1$ consumePrimitiveType(); break; case 43 : if (DEBUG) { System.out.println("ReferenceType ::= ClassOrInterfaceType"); } //$NON-NLS-1$ consumeReferenceType(); ... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/189d8495dd269a3e1a6eabd4118e6586a867755d/Parser.java/buggy/org.eclipse.jdt.core/compiler/org/eclipse/jdt/internal/compiler/parser/Parser.java | [
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public void visitZSuperNode(Node iVisited) { visit(iVisited); leave(iVisited); } | public void visitZSuperNode(Node iVisited) { visit(iVisited); leave(iVisited); } | public void visitZSuperNode(Node iVisited) { visit(iVisited); leave(iVisited); } | 45827 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45827/d31a76ee29d5978a9bec41e3ac9134cee024bcab/NodeVisitorAdapter.java/clean/org/jruby/nodes/NodeVisitorAdapter.java | [
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public boolean performOk() { // set the workspace auto-build flag IWorkspaceDescription description = ResourcesPlugin.getWorkspace().getDescription(); if (autoBuildButton.getSelection() != ResourcesPlugin.getWorkspace().isAutoBuilding()) { try { description.setAutoBuilding(autoBuildButton.getSelection()); R... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/6b8543c926bbb3c7e69fa8a3b31e9279a8389424/IDEWorkbenchPreferencePage.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/IDEWorkbenchPreferencePage.java | [
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private ArrayList sortScans( String name, List scans) { | private ArrayList sortScans(String name, List scans) { | private ArrayList sortScans( String name, List scans) { // now group by elevation_num HashMap groupHash = new HashMap(600); for (int i = 0; i < scans.size(); i++) { Level2Record record = (Level2Record) scans.get(i); Integer groupNo = new Integer(record.elevation_num); ArrayList group = (ArrayL... | 50426 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50426/33747efa5201b2c69f913702c0401a74202a10a7/Level2VolumeScan.java/clean/cdm/src/main/java/ucar/nc2/iosp/nexrad2/Level2VolumeScan.java | [
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throw Context.reportRuntimeError(Context.getMessage ("msg.arraylength.bad", null)); | throw Context.reportRuntimeError0("msg.arraylength.bad"); | public static Object jsConstructor(Context cx, Object[] args, Function ctorObj, boolean inNewExpr) throws JavaScriptException { if (!inNewExpr) { // FunctionObject.construct will set up parent, proto return ctorObj.construct(cx, ctorObj.g... | 12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/e737c6d867e82d4ba7fd00e7e388c9c8da824ff0/NativeArray.java/clean/js/rhino/org/mozilla/javascript/NativeArray.java | [
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String[] checkedServiceNames = Settings.propDataServicesForUpdate.getStringArray(); | String[] checkedServiceNames = Settings.propDataServicesForUpdate .getStringArray(); | public UpdateDlg(JFrame parent, boolean modal) { super(parent,modal); String msg; mResult =CANCEL; JPanel contentPane=(JPanel)getContentPane(); contentPane.setLayout(new BorderLayout()); contentPane.setBorder(BorderFactory.createEmptyBorder(10,10,10,10)); this.setTitle(mLocalizer.msg("dlgTitle", ... | 9266 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9266/602109e188ddce89573f6841d6ad0c3ecea53b5d/UpdateDlg.java/buggy/tvbrowser/src/tvbrowser/ui/mainframe/UpdateDlg.java | [
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Map configMap = runnable.getTestConfig( ); if ( ParameterAccessor.isDesigner( request ) && configMap.containsKey( paramName ) ) | if ( paramValueObj != null ) | protected Object getParamValueObject( HttpServletRequest request, ParameterDefinition parameterObj ) throws ReportServiceException { String paramName = parameterObj.getName( ); String format = parameterObj.getDisplayFormat( ); Object paramValueObj = super .getParamValueObject( request, parameterObj ); if ( pa... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/8c77650efa032790dbe5bbac79919e0aeee9870a/ViewerAttributeBean.java/clean/viewer/org.eclipse.birt.report.viewer/birt/WEB-INF/classes/org/eclipse/birt/report/context/ViewerAttributeBean.java | [
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public int getQuadrant(); | int getQuadrant(); | public int getQuadrant(); | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/a297187e15e126ff43dd26baec639fdcfb8b5f3e/QuadrantPanel.java/buggy/src_new/org/argouml/application/api/QuadrantPanel.java | [
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} } | if (jj_scan_token(RBRACE)) return true; | final private boolean jj_3R_284() { Token xsp; xsp = jj_scanpos; if (jj_3R_298()) { jj_scanpos = xsp; if (jj_3R_299()) { jj_scanpos = xsp; if (jj_3R_300()) { jj_scanpos = xsp; if (jj_3R_301()) return true; } } } return false; } | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/3e3034d7566b0047ef2bf5af2e29ce51f94a2d2e/JavaParser.java/buggy/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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int [] currInstList = instOfCent[i]; | int[] currInstList = instOfCent[i]; | public void buildClusterer(Instances data) throws Exception { // can clusterer handle the data? getCapabilities().testWithFail(data); m_NumSplits = 0; m_NumSplitsDone = 0; m_NumSplitsStillDone = 0; // replace missing values m_ReplaceMissingFilter = new ReplaceMissingValues(); m_ReplaceMissingF... | 48918 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48918/4e4a4a425cc1c0879dd2367e425d0fc335e7547c/XMeans.java/clean/weka/clusterers/XMeans.java | [
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_t = __t1501; | _t = __t1502; | public final void inputoutputthroughstate(AST _t) throws RecognitionException { AST inputoutputthroughstate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t1501 = _t; AST tmp922_AST_in = (AST)_t; match(_t,INPUTOUTPUT); _t = _t.getFirstChild(); { if (_t==null) _t=ASTNULL; switch ( _t.getType()) { case ST... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/865876f0e6319c071fef156818ff116c276cfdff/JPTreeParser.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparserbase/JPTreeParser.java | [
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PrintWriter out = BagFormatter.openUTF8Writer(options[DESTDIR].value, "by_type\\by_type.css"); | PrintWriter out = BagFormatter.openUTF8Writer(options[DESTDIR].value, "by_type" + File.separator + "by_type.css"); | private void writeStyleSheet() throws IOException { PrintWriter out = BagFormatter.openUTF8Writer(options[DESTDIR].value, "by_type\\by_type.css"); out.println(".head { font-weight:bold; background-color:#DDDDFF }"); out.println("td, th { border: 1px solid #0000FF; text-align }")... | 27800 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27800/6bc578f078e96e734184556dab09979e658632c1/GenerateSidewaysView.java/buggy/tools/java/org/unicode/cldr/icu/GenerateSidewaysView.java | [
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catch (Exception e) { | catch (Throwable t) { | protected void service(HttpServletRequest request, HttpServletResponse response) { RSACUtils.startServletRequest(request, response, rsacbeanlocator, RSACUtils.HTTP_SERVLET_FACTORY); try { rsacbeanlocator.getBeanLocator().locateBean("rootHandlerBean"); } catch (Exception e) { // Catch... | 29 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/29/dd34a03d670f49fc2560896f9515c17865d86554/ReasonableSpringServlet.java/clean/rsf-core/core/src/uk/org/ponder/rsf/servlet/ReasonableSpringServlet.java | [
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if(index >= frames.length) { | if (index >= frames.length) { | void actionPerformed(ActionEvent e) { String cmd = e.getActionCommand(); int returnValue = -1; if(cmd.equals("Cut") || cmd.equals("Copy") || cmd.equals("Paste")) { JInternalFrame f = getSelectedFrame(); if(f != null && f instanceof ActionListener) { ((Action... | 13991 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13991/b9766e81693411fa600b26b9a0763dcf621b2770/Main.java/buggy/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/Main.java | [
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public abstract String getMessage(String code, Object[] args); | public abstract String getMessage(String[] code, Object[] args); | public abstract String getMessage(String code, Object[] args); | 29 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/29/41901109804339483a9ae85fa0b13537c2e8f978/MessageLocator.java/clean/rsf-core/ponderutilcore/src/uk/org/ponder/errorutil/MessageLocator.java | [
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new String[] {"", "delta"}); | new String[] {"delta"}); | public void testChildrenOfExcludedDirectory() { if (!loginSuceeded) { return; } if (!changeRemoteDir(remoteTmpDir)) { return; } getProject().executeTarget("children-of-excluded-dir-setup"); FTP.FTPDirectoryScanner ds = myFTPTask.newScanner(ftp); ... | 17033 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17033/f897eebfa0f5311ea1560b0fad30e08022812a83/FTPTest.java/clean/src/testcases/org/apache/tools/ant/taskdefs/optional/net/FTPTest.java | [
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index++; | private void paintChildrenWithOverlap(Graphics g) { Shape originalClip = g.getClip(); Rectangle inner = SwingUtilities.calculateInnerArea(this, rectCache); g.clipRect(inner.x, inner.y, inner.width, inner.height); Component[] children = getComponents(); // Find the rectangles that need to be painted fo... | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/abad947539d38da7392ff914207d1bb7d5538320/JComponent.java/buggy/core/src/classpath/javax/javax/swing/JComponent.java | [
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page.printAhref(ref(sym), CLASSES_FRAME_NAME, name); | page.printAhref(ref(sym), CLASSES_FRAME, name); | private void addTreeTable(Tree[] trees, String title, boolean useFullName) { if (trees.length > 0) { page.printlnBold(title); page.printlnOTag("table", ATTRS_LIST).indent(); page.printlnOTag("tr").indent(); page.printlnOTag("td", new XMLAttribute[] { new XMLAttribute("st... | 5590 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5590/de584bc658a38af84d452993beedd7e85424ca15/HTMLGenerator.java/clean/sources/scala/tools/scaladoc/HTMLGenerator.java | [
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Argument arg = param.getArgument(); String value = visitor.visitValue(s, !cmdLine.hasNext(), cmdLine.getTokenType()); if( value != null ) arg.setValue(value); } if (param.isSatisfied()) param = null; } while (cmdLine.hasNext()); } | final boolean last = !cmdLine.hasNext(); Argument arg = param.getArgument(); String value = visitor.visitValue(s, last, cmdLine.getTokenType()); if (value != null) { if (visitor.isValueValid(arg, value, last)) { arg.setValue(value); } else { throw new SyntaxErrorException("Invalid value for argument"); } } } if (para... | private synchronized void visitCommandLine(CommandLine cmdLine, CommandLineVisitor visitor) { clearArguments(); Parameter param = null; do { String s = ""; if( cmdLine.hasNext() ) s = cmdLine.next(); // TODO: it didn't handle correctly the parameters starting with "-" /*if (s.startsWit... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/8475fed231619f209c4398ccad2ba966899e292d/Syntax.java/buggy/shell/src/shell/org/jnode/shell/help/Syntax.java | [
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setModified(true); | public void setPpTxnId(String ppTxnId) { if (((ppTxnId == null) && (_ppTxnId != null)) || ((ppTxnId != null) && (_ppTxnId == null)) || ((ppTxnId != null) && (_ppTxnId != null) && !ppTxnId.equals(_ppTxnId))) { if (!XSS_ALLOW_PPTXNID) { ppTxnId = XSSUtil.strip(ppTxnId); } _ppTxnId = ppTxnId; setModi... | 57692 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57692/f4d6afc6707f57fd84bf6b624f0c119657b0a766/ShoppingOrderModel.java/clean/portal-ejb/src/com/liferay/portlet/shopping/model/ShoppingOrderModel.java | [
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if (!collection.collection.getPermissions().validate(user, Permission.READ)) | if (!collection .collection .getPermissions() .validate(user, Permission.READ)) | public Permission[] listCollectionPermissions() throws XMLDBException { if (!collection.collection.getPermissions().validate(user, Permission.READ)) return new Permission[0]; Permission perms[] = new Permission[collection.collection.getChildCollectionCount()]; DBBroker broker = null; try { broker = pool.get(us... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/542794bb5fd4ba67897c2c2677f4f663483ba69d/LocalUserManagementService.java/buggy/src/org/exist/xmldb/LocalUserManagementService.java | [
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return null; | return null; | findImplementor(JavaClass[] clazz, String name, String signature) { for(int i = 0;i < clazz.length;i++) { Method m = findImplementation(clazz[i], name, signature); if (m != null) { if ((m.getAccessFlags() & ACC_ABSTRACT) != 0) return null; else return clazz[i]; } } return null; } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/4748a5a9b76f3dd763ee6bc7755c932a711bd6a6/Lookup.java/clean/findbugs/src/java/edu/umd/cs/findbugs/Lookup.java | [
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dumpElementln("no, got IOException"); | if(dump) dumpElementln("no, got IOException"); | public final Object readObject() throws ClassNotFoundException, IOException { if (this.useSubclassMethod) return readObjectOverride(); boolean was_deserializing; Object ret_val; was_deserializing = this.isDeserializing; boolean is_consumed = false; boolean old_mode = setBlockDataMode(false); ... | 56365 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56365/287ecb3eab399e579158e4cbd037261f67ffbc1b/ObjectInputStream.java/buggy/libjava/java/io/ObjectInputStream.java | [
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final Block aux=copyBlock(b,b.off,b.len); | Block aux=copyBlock(b,b.off,b.len); | public void join(Message m) { // added on 7-Oct-2003 if (AppiaConfig.QUOTA_ON) bind(m.length()); if (first == null) { first = m.first; size = m.size; return; } if (roMode) clearReadOnly(); if (m.roMode) m.clearReadOnly(); Block b; Block prev=null; for (b = first; b != null; b = b.next) {... | 47988 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47988/cbbbe50f14c3ebcc2a939948e5ca87c12b95eda3/Message.java/clean/trunk/appia/src/org/continuent/appia/core/message/Message.java | [
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DialogUtils.openFilteredClassesDialog(IC2DFrame.this, ic2dPanel, activeObjectFilter); | DialogUtils.openNewGlobusHostDialog((java.awt.Component) IC2DFrame.this, ic2dObject.getWorldObject(), logger); | public void actionPerformed(java.awt.event.ActionEvent e) { DialogUtils.openFilteredClassesDialog(IC2DFrame.this, ic2dPanel, activeObjectFilter); } | 23362 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/23362/5e6860c26fe200ecc080f3ddc3de5b5afad88243/IC2DFrame.java/buggy/src/org/objectweb/proactive/ic2d/gui/IC2DFrame.java | [
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public static void cssParse( String msg ) { cssParse( Level.INFO, msg ); } | public static void cssParse(String msg) { cssParse(Level.INFO, msg); } | public static void cssParse( String msg ) { cssParse( Level.INFO, msg ); } | 57883 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57883/5447a62138e728955d18cb200a72cbc04251c51f/XRLog.java/buggy/src/java/org/xhtmlrenderer/util/XRLog.java | [
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return MylarUiPlugin.getDefault().getColorMap().HYPERLINK; | return HYPERLINK; | public Color getForeground(Object element) { return MylarUiPlugin.getDefault().getColorMap().HYPERLINK; } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/23c8cbf0c6d069ce144d0844eb6071420662b796/TaskSummaryEditor.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasks/ui/TaskSummaryEditor.java | [
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popInput (); | popInput(); | private char readCh () throws SAXException, IOException { // As long as there's nothing in the // read buffer, try reading more data // (for an external entity) or popping // the entity stack (for either). while (readBufferPos >= readBufferLength) { switch (sourceType) { case INPUT_READER: case IN... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/24330cfb4cc445da21a71a819ce54efe764fab6e/XmlParser.java/buggy/core/src/classpath/gnu/gnu/xml/aelfred2/XmlParser.java | [
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SelectableChannel channel = key.channel(); | SelectableChannel channel = key.channel(); | public static IRubyObject select_static(IRuby runtime, IRubyObject[] args) { try { boolean atLeastOneDescriptor = false; Selector selector = Selector.open(); if (!args[0].isNil()) { atLeastOneDescriptor = true; // read ... | 46770 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46770/99948200169654423914f4ddafc12db3691908e7/IOMetaClass.java/clean/src/org/jruby/runtime/builtin/meta/IOMetaClass.java | [
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buffer.append(ch); | index = DecompData.offsets.elementAt(ch) & DecompData.DECOMP_MASK; if (index > minDecomp) { doAppend(DecompData.contents, index, buffer); } else { buffer.append(ch); } | private char nextDecomp() { boolean hangul = (options & IGNORE_HANGUL) == 0; char ch = curForward(); int offset = DecompData.offsets.elementAt(ch); int index = offset & DecompData.DECOMP_MASK; if (index > minDecomp || DecompData.canonClass.elementAt(ch) != DecompData.BASE) ... | 5620 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5620/1c254cf440ab63dde02c1b18fbd8b7c64a1944d0/Normalizer.java/buggy/icu4j/src/com/ibm/icu/text/Normalizer.java | [
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msg.set(FREENET_ROUTING_KEY, nodeCHK); | msg.set(FREENET_ROUTING_KEY, Key); | public static Message createTestRequest(NodeCHK nodeCHK, long id, int htl) { Message msg = new Message(testRequest); msg.set(UID, id); msg.set(FREENET_ROUTING_KEY, nodeCHK); msg.set(HTL, htl); return msg; } | 50619 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50619/52fadbe4420bc8c2fb61a8e805e65feb1b7e21db/DMT.java/buggy/src/freenet/io/comm/DMT.java | [
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public void addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand) { super.addAtom(oAtom, oMonomer, oStrand); if (!sequentialListOfMonomers.contains(oMonomer.getMonomerName())) sequentialListOfMonomers.add(oMonomer.getMonomerName()); | public void addAtom(IPDBAtom oAtom){ super.addAtom(oAtom); | public void addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand) { super.addAtom(oAtom, oMonomer, oStrand); if (!sequentialListOfMonomers.contains(oMonomer.getMonomerName())) sequentialListOfMonomers.add(oMonomer.getMonomerName()); } | 46046 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46046/67de0657915cc74b758a31658d78c825f5754da8/PDBPolymer.java/buggy/src/org/openscience/cdk/protein/data/PDBPolymer.java | [
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result = findRequiredSource(pkgName); if (result == null) result = findDynamicSource(pkgName); return result; | return findRequiredSource(pkgName); | private PackageSource findSource(String pkgName) { if (pkgName == null) return null; PackageSource result = findImportedSource(pkgName); if (result != null) return result; result = findRequiredSource(pkgName); if (result == null) result = findDynamicSource(pkgName); return result; } | 2516 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2516/dab35f822bc9d73d4945e86444d58c8844a5c597/BundleLoader.java/buggy/bundles/org.eclipse.osgi/core/framework/org/eclipse/osgi/framework/internal/core/BundleLoader.java | [
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Group newGroup = Group.create(context); newGroup.setName("COLLECTION_" + collection.getID() + "_WFSTEP_" + step); newGroup.update(); collection.setWorkflowGroup(step, newGroup); | Group newGroup = collection.createWorkflowGroup(step); | private void processConfirmEditCollection(Context context, HttpServletRequest request, HttpServletResponse response, Community community, Collection collection) throws ServletException, IOException, SQLException, AuthorizeException { if (request.getParameter("cr... | 49711 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49711/621ffe266a80b63e4c5930650bbd41164f6557c6/EditCommunitiesServlet.java/buggy/dspace/src/org/dspace/app/webui/servlet/admin/EditCommunitiesServlet.java | [
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m_trainInstances = data; | m_trainInstances = new Instances(data); | public void buildEvaluator (Instances data) throws Exception { if (data.checkForStringAttributes()) { throw new UnsupportedAttributeTypeException("Can't handle string attributes!"); } m_trainInstances = data; m_trainInstances.deleteWithMissingClass(); m_classIndex = m_trainInstances.classIndex();... | 4773 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4773/06164d97b6463ac6574981f8101374dc8ed32561/ConsistencySubsetEval.java/clean/weka/attributeSelection/ConsistencySubsetEval.java | [
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public HardTokenIssuerData(int hardtokenissuerid, String alias, BigInteger certificatesn, String issuerdn, HardTokenIssuer hardtokenissuer){ | public HardTokenIssuerData(int hardtokenissuerid, String alias, int admingroupid , HardTokenIssuer hardtokenissuer){ | public HardTokenIssuerData(int hardtokenissuerid, String alias, BigInteger certificatesn, String issuerdn, HardTokenIssuer hardtokenissuer){ this.hardtokenissuerid=hardtokenissuerid; this.alias=alias; this.certificatesn=certificatesn; this.issuerdn=issuerdn; this.hardtokenissuer=... | 4109 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4109/7734ca14478c03822c95e1fe85ba81ec3f718dc9/HardTokenIssuerData.java/buggy/src/java/se/anatom/ejbca/hardtoken/HardTokenIssuerData.java | [
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int ipOffset = VM_Entrypoints.registersIPField.getOffset(); int fprsOffset = VM_Entrypoints.registersFPRsField.getOffset(); int gprsOffset = VM_Entrypoints.registersGPRsField.getOffset(); int regsOffset = VM_Entrypoints.threadContextRegistersField.getOffset(); | int ipOffset = VM_Entrypoints.registersIPField.getOffsetAsInt(); int fprsOffset = VM_Entrypoints.registersFPRsField.getOffsetAsInt(); int gprsOffset = VM_Entrypoints.registersGPRsField.getOffsetAsInt(); int regsOffset = VM_Entrypoints.threadContextRegistersField.getOffsetAsInt(); | private static VM_CodeArray generateThreadSwitchInstructions() { VM_Assembler asm = new VM_Assembler(0); int ipOffset = VM_Entrypoints.registersIPField.getOffset(); int fprsOffset = VM_Entrypoints.registersFPRsField.getOffset(); int gprsOffset = VM_Entrypoints.registersGPRsField.getOffset(); int regs... | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/71f0481e0131f8f2137e2feea85ae32a28daffcc/VM_OutOfLineMachineCode.java/buggy/rvm/src/vm/arch/powerPC/runtime/VM_OutOfLineMachineCode.java | [
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public org.quickfix.field.Product getProduct() throws FieldNotFound { org.quickfix.field.Product value = new org.quickfix.field.Product(); | public quickfix.field.Product getProduct() throws FieldNotFound { quickfix.field.Product value = new quickfix.field.Product(); | public org.quickfix.field.Product getProduct() throws FieldNotFound { org.quickfix.field.Product value = new org.quickfix.field.Product(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/SecurityTypes.java/buggy/src/java/src/quickfix/fix43/SecurityTypes.java | [
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myManager.beforeChildRemoval(treeEvent); | public void run() { PsiTreeChangeEventImpl treeEvent = new PsiTreeChangeEventImpl(myManager); boolean isExcluded = vFile.isDirectory() && myProjectFileIndex.isIgnored(vFile); if (oldParentDir != null && !isExcluded) { if (newParentDir != null) { tre... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/671af53ecb4df5a36564759f83fd6c3b1163178f/FileManagerImpl.java/buggy/source/com/intellij/psi/impl/file/impl/FileManagerImpl.java | [
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public void processRequests(RequestProcessor processor); | public void processRequests(RequestProcessor processor, Body body); | public void processRequests(RequestProcessor processor); | 58694 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58694/2666230e00db643175e81dac0b52f3f8ba384784/RequestQueue.java/buggy/src/org/objectweb/proactive/core/body/request/RequestQueue.java | [
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.addContent(new Element("variable") | .addContent(new Element("display") | void setupDoc() { // create a JDOM tree with just some elements root = new Element("programmer-config"); doc = new Document(root); doc.setDocType(new DocType("programmer-config","programmer-config.dtd")); // add some elements root.addContent(new Element("programmer") .addContent(new Element("pane") ... | 2652 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2652/7ec2858feed8d156d40e9f9a20f80bb18094e770/PaneProgFrameTest.java/clean/tests/jmrit/symbolicprog/PaneProgFrameTest.java | [
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setResult(parser.isValidEditString(new EObjectAdapter(element), (String) value)); } | setResult(parser.isValidEditString(new EObjectAdapter(element), (String) value)); } | public void run() { setResult(parser.isValidEditString(new EObjectAdapter(element), (String) value)); } | 56962 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56962/816096641504ba96db7bef449fe01a4b67ff0d37/AddStructuralFeatureValueActionNameEditPart.java/clean/plugins/org.eclipse.uml2.diagram.activity/src/org/eclipse/uml2/diagram/activity/edit/parts/AddStructuralFeatureValueActionNameEditPart.java | [
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if (jj_3R_59()) return true; | if (jj_3R_61()) return true; | final private boolean jj_3R_41() { if (jj_3R_59()) return true; return false; } | 55820 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55820/5b85dc5e122a5bdf3ea90d4f89cebe71413fc26b/Parser.java/buggy/src/java/org/apache/velocity/runtime/parser/Parser.java | [
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_toolBar.addSeparator(); _toolBar.add(ActionAddNote.SINGLETON); | protected void initToolBar() { //System.out.println("making state toolbar"); _toolBar = new ToolBar(); _toolBar.setLayout(new FlowLayout(FlowLayout.LEFT, 0, 0)); // _toolBar.add(Actions.Cut); // _toolBar.add(Actions.Copy); // _toolBar.add(Actions.Paste); // _toolBar.addSeparator()... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/171106e79f069657a01402dd34836aa7261299fd/UMLActivityDiagram.java/clean/src_new/org/argouml/uml/diagram/activity/ui/UMLActivityDiagram.java | [
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assertLinkPresentWithText("Configure htmlemailpublisher"); assertLinkPresentWithText("Configure jabberpublisher"); assertLinkPresentWithText("Configure onfailurepublisher"); assertLinkPresentWithText("Configure onsuccesspublisher"); assertLinkPresentWithText("Configure rsspublisher"); assertLinkPresentWithText("Configu... | assertLinkPresentWithText("Configure htmlemail"); assertLinkPresentWithText("Configure jabber"); assertLinkPresentWithText("Configure onfailure"); assertLinkPresentWithText("Configure onsuccess"); assertLinkPresentWithText("Configure scp"); assertLinkPresentWithText("Configure socket"); assertLinkPresentWithText("Conf... | public void testShouldListAvailablePublishers() { beginAt(PUBLISHERS_URL); assertLinkPresentWithText("Configure antpublisher"); assertLinkPresentWithText("Configure cmsynergybaselinepublisher"); assertLinkPresentWithText("Configure cmsynergytaskpublisher"); assertLinkPresentWithTe... | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/18e6a03874c9e582dfdbdccb560ae60e6cf5e938/PluginsWebTest.java/clean/webtest/net/sourceforge/cruisecontrol/PluginsWebTest.java | [
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public org.quickfix.field.PartyID get(org.quickfix.field.PartyID value) | public quickfix.field.PartyID get(quickfix.field.PartyID value) | public org.quickfix.field.PartyID get(org.quickfix.field.PartyID value) throws FieldNotFound { getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/QuoteStatusReport.java/clean/src/java/src/quickfix/fix44/QuoteStatusReport.java | [
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Logger.error(this,"Error : can't restart the node : consider installing the wrapper. PLEASE REPORT THAT ERROR TO devl@freenetproject.org"); | if(!Node.logConfigHandler.getFileLoggerHook().hasRedirectedStdOutErrNoLock()) { System.err.println("Error : can't restart the node : consider installing the wrapper. PLEASE REPORT THAT ERROR TO devl@freenetproject.org"); t.printStackTrace(); } | public void run() { while(true) { try { Thread.sleep(5000); } catch (InterruptedException e) { // Ignore } long now = System.currentTimeMillis(); long recordedTime = ((long)lastTimeInSeconds) * 1000; long diff = now - recordedTime; Logger.minor(this, "PacketSender last updated ... | 56348 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56348/6f303a891fa002ce6d4bcce4f0bbd7f394e1fb69/PacketSender.java/buggy/src/freenet/node/PacketSender.java | [
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graph.drawString("T", 19, 70); | graph.drawString("T", 19, 70); | public void prepare() { // figure out size String shortName = entity.getShortName(); if (Settings.showUnitId) { shortName+=(" ID:"+entity.getId()); } Font font = new Font("SansSerif", Font.PLAIN, 10); Rectangle tempRect = ... | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/c9f0f1d2e5ceb1c577004355102dc4109baf3a49/BoardView1.java/buggy/megamek/src/megamek/client/ui/AWT/BoardView1.java | [
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ReportRequest request = new ReportRequest(DeferredGraphicalViewer.this); List list = new ArrayList(); if(getSelection() instanceof IStructuredSelection) | if ( DeferredGraphicalViewer.this.getControl( ) == null || DeferredGraphicalViewer.this.getControl( ) .isDisposed( ) ) | protected void fireSelectionChanged( ) { Display.getCurrent( ).asyncExec( new Runnable( ) { public void run( ) { ReportRequest request = new ReportRequest(DeferredGraphicalViewer.this); List list = new ArrayList(); if(getSelection() instanceof IStructuredSelection) { list = ((IStructuredSelectio... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/879c6e2a73c9076aeeed74591c18318a1397dcd3/DeferredGraphicalViewer.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/editors/parts/DeferredGraphicalViewer.java | [
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return new RoundRobinSplitter (); | { RoundRobinSplitter splitter = new RoundRobinSplitter (((Integer)weights.remove (0)).intValue ()); return splitter; } | Splitter getSplitter () { switch (type) { case 1: return new RoundRobinSplitter (); case 2: WeightedRoundRobinSplitter splitter = new WeightedRoundRobinSplitter (); while (!weights.isEmpty ()) ... | 47772 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47772/4c87ad8346cdcf863b78cfc5759cba33281dea13/SplitJoin.java/buggy/streams/src/streamit/library/SplitJoin.java | [
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System.out.println( "find xpath-expr execute the given XPath expression."); System.out.println( "show [position] display query result value at position."); System.out.println( "\n--- user management (may require dba rights) ---"); | System.out.println("find xpath-expr execute the given XPath expression."); System.out.println("show [position] display query result value at position."); System.out.println("\n--- user management (may require dba rights) ---"); | protected static void displayHelp() { System.out.println("--- general commands ---"); System.out.println("ls list collection contents"); System.out.println("cd [collection|..] change current collection"); System.out.println( "put [file pattern] upload file or directory" + " to the database");... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/1c0cc42431436631d1b2e9ea8af63bb6dd883496/InteractiveClient.java/clean/src/org/exist/InteractiveClient.java | [
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int bits = OS.GetWindowLong (handle, OS.GWL_STYLE); if ((bits & OS.TVS_TRACKSELECT) != 0) { OS.SetTextColor (hDC, getForegroundPixel ()); | if (explorerTheme) { int bits = OS.GetWindowLong (handle, OS.GWL_STYLE); if ((bits & OS.TVS_TRACKSELECT) != 0) { OS.SetTextColor (hDC, getForegroundPixel ()); } | LRESULT CDDS_ITEMPOSTPAINT (int wParam, int lParam) { if (ignoreCustomDraw) return null; NMTVCUSTOMDRAW nmcd = new NMTVCUSTOMDRAW (); OS.MoveMemory (nmcd, lParam, NMTVCUSTOMDRAW.sizeof); if (nmcd.left == nmcd.right) { return new LRESULT (OS.CDRF_DODEFAULT); } int hDC = nmcd.hdc; OS.RestoreDC (hDC, -1); /* * Bug in Win... | 12413 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12413/28341f36b2b474d250bcbc993c3af8734c20f08e/Tree.java/clean/bundles/org.eclipse.swt/Eclipse SWT/win32/org/eclipse/swt/widgets/Tree.java | [
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setLocation(x, y); | this.x = x; this.y = y; | public void move(int x, int y) { setLocation(x, y); } | 1739 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1739/3fe1c14284ce32b79d0e66441aec6a45a77ff684/Rectangle.java/clean/libjava/java/awt/Rectangle.java | [
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writer.startElement("xsd:schema", new String[] { "xmlns:xsd", XmlaConstants.NS_XSD, "targetNamespace", XmlaConstants.NS_XMLA_ROWSET, "xmlns:xsi", XmlaConstants.NS_XSI, "xmlns:sql", "urn:schemas-microsoft-com:xml-sql", "elementFormDefault", "qualified" }); writer.startElement("xsd:element", new String[] { "name", "root... | writeRowsetXmlSchemaTop(writer); writeRowsetXmlSchemaRowDef(writer); writeRowsetXmlSchemaBottom(writer); | void writeRowsetXmlSchema(SaxWriter writer) { writer.startElement("xsd:schema", new String[] { "xmlns:xsd", XmlaConstants.NS_XSD, "targetNamespace", XmlaConstants.NS_XMLA_ROWSET, "xmlns:xsi", XmlaConstants.NS_XSI, "xmlns:sql", "urn:schemas-microsoft-com:xml-sql", ... | 37907 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/37907/41e43f806f666da1ff483ebb20820e61433739e2/RowsetDefinition.java/buggy/src/main/mondrian/xmla/RowsetDefinition.java | [
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mcuss.addUrl(url0, true, true, null); | mau.addUrl(url0, true, true, null); | public void testFindMostRecentCachedUrlWithNormalization() throws Exception { final String prefix = "http://foo.bar/"; // pseudo crawl rule prefix String url0 = "http://foo.bar/xxx/baz"; // normal form of test url String url1 = "http://foo.bar/SESSION/xxx/baz"; // should normalize to url0 String url2... | 8150 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8150/1daae17bba467f29e3575dfd082f58a6511a6679/TestPluginManager.java/clean/test/src/org/lockss/plugin/TestPluginManager.java | [
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this.getLastModificationDate().setTime(lastModification.getTime()); | if (lastModification != null) { this.setLastModificationDate(new Date(lastModification.getTime())); } else { this.setLastModificationDate(null); } | public void setLastModification(Timestamp lastModification) { this.getLastModificationDate().setTime(lastModification.getTime()); } | 2645 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2645/3edc460afff978385914b80a52fab12306c6a86b/MasterDegreeThesisDataVersion.java/clean/src/net/sourceforge/fenixedu/domain/MasterDegreeThesisDataVersion.java | [
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jEdit.propertiesChanged(); | EditBus.send(new DockableWindowUpdate( DockableWindowManager.this, DockableWindowUpdate.PROPERTIES_CHANGED, null )); | public JPopupMenu createPopupMenu(DockableWindowContainer container, final String dockable, boolean clone) { JPopupMenu popup = new JPopupMenu(); if(dockable == null && container instanceof PanelWindowContainer) { ActionListener listener = new ActionListener() { public void actionPerformed(ActionEvent evt) ... | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/666ebe69c78ec442736fbed7b1038fc3a506d660/DockableWindowManager.java/clean/org/gjt/sp/jedit/gui/DockableWindowManager.java | [
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org.exist.xquery.parser.XQueryAST tmp109_AST = null; tmp109_AST = (org.exist.xquery.parser.XQueryAST)astFactory.create(LT(1)); astFactory.addASTChild(currentAST, tmp109_AST); | org.exist.xquery.parser.XQueryAST tmp110_AST = null; tmp110_AST = (org.exist.xquery.parser.XQueryAST)astFactory.create(LT(1)); astFactory.addASTChild(currentAST, tmp110_AST); | public final void flworExpr() throws RecognitionException, TokenStreamException, XPathException { returnAST = null; ASTPair currentAST = new ASTPair(); org.exist.xquery.parser.XQueryAST flworExpr_AST = null; { int _cnt92=0; _loop92: do { switch ( LA(1)) { case LITERAL_for: { forClause(); astFact... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/b1f955b7f1cec4172ad3be7bd2855bd3cca3e6f2/XQueryParser.java/clean/src/org/exist/xquery/parser/XQueryParser.java | [
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diffControlsState(ch, children1, controlInfo2.getChildren(), itemsetsFull1, itemsetsFull2); | diffControlsState(ch, children1, controlInfo2.getChildren(), itemsetsFull1, itemsetsFull2, valueChangeControlIds); | public static void diffControlsState(ContentHandlerHelper ch, List state1, List state2, Map itemsetsFull1, Map itemsetsFull2) { // Trivial case if (state1 == null && state2 == null) return; // Both lists must have the same size if present; state1 can be null if ((state1 != nul... | 52783 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52783/bcf2aac27ada3480605ddf2a72f58ebf3391590f/XFormsServer.java/buggy/src/java/org/orbeon/oxf/xforms/processor/XFormsServer.java | [
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File deploymentDir = new File(_appRoot, "processes"); _poller = new DeploymentPoller(deploymentDir, this); | public void init(ServletConfig config, AxisConfiguration axisConf) throws ServletException { _axisConfig = axisConf; _appRoot = new File(config.getServletContext().getRealPath("/WEB-INF")); TempFileManager.setWorkingDirectory(_appRoot); __log.debug("Loading properties"); _odeConf... | 45373 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45373/f705b6b4061f18824619feedc8e55c73de10e185/ODEServer.java/buggy/axis2/src/main/java/org/apache/ode/axis2/ODEServer.java | [
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public void changed() { //{{{ Debug code if(Debug.SCROLL_DEBUG) { Log.log(Log.DEBUG,this,"changed() before: " + physicalLine + ":" + scrollLine); } //}}} ensurePhysicalLineIsVisible(); int screenLines = getScreenLineCount(physicalLine); if(skew >= screenLines) skew = screenLines - 1; //{{{ ... | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/ddcee29fe61f20b094813d0b0cba5541edc2b6db/DisplayManager.java/buggy/org/gjt/sp/jedit/textarea/DisplayManager.java | [
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this.output.addRef(encodeTypeEntry(new char[][]{parmDecl.getNameCharArray()}, VAR, ICSearchConstants.DECLARATIONS)); | this.output.addRef(encodeTypeEntry(new char[][]{parmDecl.getNameCharArray()}, VAR, ICSearchConstants.DECLARATIONS),indexFlag); | public void addFunctionDeclaration(IASTFunction function){ this.output.addRef(encodeEntry(function.getFullyQualifiedNameCharArrays(),FUNCTION_DECL,FUNCTION_DECL_LENGTH)); Iterator i=function.getParameters(); while (i.hasNext()){ Object parm = i.next(); if (parm instanceof IASTParameterDeclaration){ IASTPar... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/2473fc9bad9772bea7e830611534fa1d7df713b5/AbstractIndexer.java/buggy/core/org.eclipse.cdt.core/index/org/eclipse/cdt/internal/core/search/indexing/AbstractIndexer.java | [
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pattern = pattern.replaceAll("\\.", " "); pattern = pattern.replaceAll("\\,", " "); | pattern = pattern.replaceAll("\\.", ""); pattern = pattern.replaceAll("\\,", ""); | public BooleanSearcher(String pattern, boolean CaseSensitive) throws ParserException { Hashtable matcherTab = new Hashtable(); caseSensitive = CaseSensitive; pattern = pattern.replaceAll("\\\"", " "); pattern = pattern.replaceAll("\\(", " ( "); pattern = pattern.replaceAll("\\)", " ) "); pattern = p... | 9266 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9266/4917b38b2e9c3be40bb1cae0456ac3ba0863bcf9/BooleanSearcher.java/clean/tvbrowser/src/tvbrowser/core/search/booleansearch/BooleanSearcher.java | [
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boolean synPredMatched64 = false; if ((((LA(1) >= LITERAL_child && LA(1) <= 65)))) { int _m64 = mark(); synPredMatched64 = true; | boolean synPredMatched81 = false; if ((((LA(1) >= LITERAL_child && LA(1) <= 77)))) { int _m81 = mark(); synPredMatched81 = true; | public final void forwardOrReverseStep() throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST forwardOrReverseStep_AST = null; boolean synPredMatched64 = false; if ((((LA(1) >= LITERAL_child && LA(1) <= 65)))) { int _m64 = mark(); synPredMatched64 =... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/991914fac6d8ec32704e1e021ab6bf8707ee56ec/XPathParser2.java/clean/src/org/exist/parser/XPathParser2.java | [
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final void lock(ProcessorLock otherLock) { if (otherLock == null) { queueLock.lock(); } else { ProcessorLock.lock(queueLock, otherLock); } | final void lock() { queueLock.lock(); | final void lock(ProcessorLock otherLock) { if (otherLock == null) { queueLock.lock(); } else { ProcessorLock.lock(queueLock, otherLock); } } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/62994783631e20e868b65c6250b1b0c82dff528a/VmScheduler.java/buggy/core/src/core/org/jnode/vm/scheduler/VmScheduler.java | [
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if (logger.isErrorEnabled()) logger.error("Error initing SASComponentInterceptor: ",e); | logger.error("Error initing SASComponentInterceptor: ",e); | public SASComponentInterceptor(ORBInitInfo info) { orb = ((org.jacorb.orb.portableInterceptor.ORBInitInfoImpl)info).getORB(); config = orb.getConfiguration(); logger = config.getNamedLogger("jacorb.SAS.IOR"); try { Encoding encoding = new Encoding(ENC... | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/7dc258e1d898c133fa8113c1af1594d926e8ccff/SASComponentInterceptor.java/buggy/src/org/jacorb/orb/standardInterceptors/SASComponentInterceptor.java | [
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ApplicationContext grailsContext = (ApplicationContext)getServletContext().getAttribute(GrailsRequestAttributes.APPLICATION_CONTEXT); | getServletContext().setAttribute(GrailsApplicationAttributes.PARENT_APPLICATION_CONTEXT,parent); ApplicationContext grailsContext = (ApplicationContext)getServletContext().getAttribute(GrailsApplicationAttributes.APPLICATION_CONTEXT); | protected WebApplicationContext createWebApplicationContext(WebApplicationContext parent) throws BeansException { // use config file locations if available ApplicationContext grailsContext = (ApplicationContext)getServletContext().getAttribute(GrailsRequestAttributes.APPLICATION_CONTEXT); GrailsAppli... | 46315 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46315/7114c6f1d726de26c95f9d3d7a44e88484d23551/GrailsDispatcherServlet.java/clean/grails/src/web/org/codehaus/groovy/grails/web/servlet/GrailsDispatcherServlet.java | [
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return (Connection)Proxy.newProxyInstance(getClass().getClassLoader(), new Class[]{Connection.class}, handler); | Connection con = (Connection)Proxy.newProxyInstance(getClass().getClassLoader(), new Class[]{Connection.class}, handler); last.setProxy(con); return con; | public Connection getConnection() throws SQLException { if (con == null) { throw new SQLException("This PooledConnection has already been closed!"); } // Only one connection can be open at a time from this PooledConnection. See JDBC 2.0 Optional Package spec section 6.2.3 if (last != null) { last.close(); ... | 45497 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45497/a905eaacf015bd9903432faeb8f1f0a0f0a0c0cf/PooledConnectionImpl.java/buggy/src/interfaces/jdbc/org/postgresql/jdbc2/optional/PooledConnectionImpl.java | [
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StringBuffer tag = new StringBuffer(tagPrefix); tag.append(LOCALE_SEP).append(specToFind.get()); | for (int pass=0; pass<2; ++pass) { StringBuffer tag = new StringBuffer(); if (pass == 0) { tag.append(direction == Transliterator.FORWARD ? "TransliterateTo_" : "TransliterateFrom_"); } else { tag.append("Transliterate_"); } tag.append(specToFind.get()); try { String[] subres = res.getStringArray(tag.toString()... | private Object[] findInBundle(Spec specToOpen, Spec specToFind, String variant, String tagPrefix) { // assert(specToOpen.isLocale()); ResourceBundle res = specToOpen.getBundle(); if (res == null) ... | 5620 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5620/2da0c75ff8153ad27296c84f4b2e62667eeebf2a/TransliteratorRegistry.java/clean/icu4j/src/com/ibm/icu/text/TransliteratorRegistry.java | [
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document = documentBuilder.parse(new InputSource(new StringReader(request.substring(request.indexOf("<"))))); | document = documentBuilder.parse(new InputSource(new StringReader(request))); | public void process(String request, Writer response) { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); DocumentBuilder documentBuilder = null; try { documentBuilder = factory.newDocumentBuilder(); } catch (ParserCo... | 37907 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/37907/f2c971d49821a58381ed2af618ceadbaf62099ce/XmlaMediator.java/clean/src/main/mondrian/xmla/XmlaMediator.java | [
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doAction( getVariable() ); | doAction( fVariables ); | public void run( IAction action ) { if ( getVariable() != null ) { final MultiStatus ms = new MultiStatus( CDebugUIPlugin.getUniqueIdentifier(), DebugException.REQUEST_FAILED, "", null ); BusyIndicator.showWhile( Display.getCurrent(), new Runnable() { public void run() ... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/c6f2a35f9c3b95851027ef1f79bf454fc90cd08c/VariableFormatActionDelegate.java/buggy/debug/org.eclipse.cdt.debug.ui/src/org/eclipse/cdt/debug/internal/ui/actions/VariableFormatActionDelegate.java | [
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log.log( Level.WARNING, e.getMessage( ), e ); | addException( context, e ); | public static void handleBeforeFactory( ReportDesignHandle report, ExecutionContext context ) { try { IReportDesign reportDesign = new ReportDesign( report ); // TODO: Wrap report if ( handleJS( reportDesign, report.getBeforeFactory( ), context ) .didRun( ) ) return; IReportEventHandler eh = ( IRepo... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/c0422a1db84842d1e332663c3d4c7e2a8109aca8/ReportScriptExecutor.java/clean/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/script/internal/ReportScriptExecutor.java | [
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osTask.setDirectory(dir); | { if(dir.equals("off")) osTask.setEnabled(false); else osTask.setDirectory(dir); } | public ConsoleInstall() { installer = new Install(); String appName = installer.getProperty("app.name"); String appVersion = installer.getProperty("app.version"); BufferedReader in = new BufferedReader(new InputStreamReader( System.in)); System.out.println("*** " + appName + " " + appVersion + " installer"); O... | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/eeb5019ce9ab3ee5ac558fdeab088eca981c61da/ConsoleInstall.java/buggy/installer/ConsoleInstall.java | [
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return ((SocketChannelImpl) ch).getNativeFD(); | NIOSocket socket = (NIOSocket) ((SocketChannelImpl) ch).socket(); return socket.getPlainSocketImpl().getNativeFD(); | public int getNativeFD() { return ((SocketChannelImpl) ch).getNativeFD(); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/decc5d82ba0a18c6445f683c0d1a3d78fe4b1564/SocketChannelSelectionKey.java/clean/core/src/classpath/gnu/gnu/java/nio/SocketChannelSelectionKey.java | [
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} | } | public void run() throws Exception { Log log = LogFactory.getLog(MisfireExample.class); log.info("------- Initializing -------------------"); // First we must get a reference to a scheduler SchedulerFactory sf = new StdSchedulerFactory(); Scheduler sched = sf.getScheduler(); log.info("------- Initializatio... | 55677 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55677/51ce7552fa3eb48cf96a05bff5bca6616477f94b/MisfireExample.java/buggy/examples/src/java/org/quartz/examples/example5/MisfireExample.java | [
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path = Helper.getPixelsPath(pixels.getId()); | PixelBuffer (Pixels pixels) { if (pixels == null) throw new NullPointerException( "Expecting a not-null pixels element."); this.pixels = pixels; path = Helper.getPixelsPath(pixels.getId()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ae0b01fad17fcacba3ec0999ca1ad645f389b5f9/PixelBuffer.java/clean/components/omeio-nio/src/ome/io/nio/PixelBuffer.java | [
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public Segment(NutchFileSystem nfs, File segmentDir, NutchConf nutchConf) throws IOException { this.nfs = nfs; | public Segment(FileSystem fs, File segmentDir, Configuration conf) throws IOException { this.fs = fs; | public Segment(NutchFileSystem nfs, File segmentDir, NutchConf nutchConf) throws IOException { this.nfs = nfs; this.segmentDir = segmentDir; this.nutchConf = nutchConf; } | 1316 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1316/25437bc825d50715dcc9a289a1b4c8fbbc6aced1/FetchedSegments.java/clean/src/java/org/apache/nutch/searcher/FetchedSegments.java | [
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qnames[i] = (QName)elements.elementAt(i); | qnames[i] = (QName) elements.elementAt(i); | public void setCdataSectionElements(Vector elements) { if(m_shouldRecordHasBeenSet) m_cdataElementsHasBeenSet = true; int n = elements.size(); org.apache.serialize.QName[] qnames = new QName[n]; for(int i = 0; i < n; i++) { qnames[i] = (QName)elements.elementAt(i); } super.setCDataElem... | 46591 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46591/77ad973f1d6ad8f28fd358f2ba4d4c63da65d953/OutputFormatExtended.java/buggy/src/org/apache/xalan/templates/OutputFormatExtended.java | [
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JNIFunctions[jniIndex] = mths[i].getMostRecentlyGeneratedInstructions(); | JNIFunctions[jniIndex] = mths[i].getCurrentCompiledMethod().getInstructions(); | public static void boot() { if (initialized) return; // fill an array of JNI names setNames(); // create method ID for JNI transition stackframes // XXX now have method specific JNICompilerInfos SES 073101 // javaToCCompilerInfo = new VM_JNICompilerInfo(); // fill in the IP entries for each... | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/391f1b893c821a6d98fc2cd6686dac315402ba87/VM_JNIEnvironment.java/clean/rvm/src/vm/arch/intel/jni/VM_JNIEnvironment.java | [
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if (miBreakpoint != null) | if (miBreakpoint != null) { | public boolean isTemporary() { if (miBreakpoint != null) return miBreakpoint.isTemporary(); return (type == ICDIBreakpoint.TEMPORARY); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/7d75673d862d5b955ccf6511a6ed5d52ee5f7cbd/Breakpoint.java/clean/debug/org.eclipse.cdt.debug.mi.core/cdi/org/eclipse/cdt/debug/mi/core/cdi/model/Breakpoint.java | [
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vpContentIPD, vpContentBPD); | getContentAreaIPD(), vpContentBPD); | private LinkedList getNextKnuthElementsAbsolute(LayoutContext context, int alignment) { autoHeight = false; Point offset = getAbsOffset(); int allocBPD, allocIPD; if (height.getEnum() != EN_AUTO) { allocBPD = height.getValue(this); //this is the content-height alloc... | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/deefe6d121de10a46522c177a53e7df2ad483062/BlockContainerLayoutManager.java/clean/src/java/org/apache/fop/layoutmgr/BlockContainerLayoutManager.java | [
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properties.setProperty("javax.sip.IP_ADDRESS", myAddress ); properties.setProperty("javax.sip.RETRANSMISSION_FILTER", "true"); | public void init() { SipFactory sipFactory = null; sipStack = null; sipFactory = SipFactory.getInstance(); sipFactory.setPathName("gov.nist"); Properties properties = new Properties(); properties.setProperty("javax.sip.IP_ADDRESS", myAddress ); properties.setProperty("javax.sip.RETRANSMISSION_FILTER", "true"); ... | 3364 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3364/68c0ca844a7d5fe4a7744cbf9898184966ce0680/Shootme.java/clean/src/examples/busy/Shootme.java | [
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protected synchronized void swapBuffers() throws GLException { | public synchronized void swapBuffers() throws GLException { | protected synchronized void swapBuffers() throws GLException { if (!CGL.flushBuffer(nsContext, nsView)) { throw new GLException("Error swapping buffers"); } } | 45742 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45742/f90ab644c419486f7894fda3725a9c81de8bb283/MacOSXOnscreenGLContext.java/clean/src/net/java/games/jogl/impl/macosx/MacOSXOnscreenGLContext.java | [
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return setCurrentConfigFromUrlList(ListUtil.list(FileUtil.urlOfString(s))); | return setCurrentConfigFromUrlList(ListUtil.list(FileTestUtil.urlOfString(s))); | boolean setCurrentConfigFromString(String s) throws IOException { return setCurrentConfigFromUrlList(ListUtil.list(FileUtil.urlOfString(s))); } | 8150 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8150/2ac688ff2bd141379852ba7ceec3bb0f154bc83f/TestConfigManager.java/buggy/test/src/org/lockss/daemon/TestConfigManager.java | [
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public Text getTextControl( Composite parent ) { // if should not have a Text( hasChoice == true ), return null // directly, avoid creating the // Text control. Because this mechod is called in various places, this // judgement is necessary. if ( hasChoice ) { return null; } // lazily creates and returns the... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/3db900b760af24686a4f6ffff7e4dc15c19b1036/ComboBoxMeasureFieldEditor.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/dialogs/ComboBoxMeasureFieldEditor.java | [
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"and c in ?", columnValue, categories); | "and c in ( ? )", columnValue, categories); | public Collection<OnmsNode> findAllByVarCharAssetColumnCategoryList(String columnName, String columnValue, Collection<OnmsCategory> categories) { return find("select distinct n from OnmsNode as n " + "join n.categories c " + "left join fetch n.assetRecord " + "left join ... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/c0f1a9307ec54941e398167137730373712197f8/NodeDaoHibernate.java/clean/opennms-dao/src/main/java/org/opennms/netmgt/dao/hibernate/NodeDaoHibernate.java | [
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private void subscribeForFileChanges() { myFileListener = new VirtualFileAdapter() { @Override public void fileCreated(VirtualFileEvent e) { if (notForMe(e)) return; //System.out.println("file created"); createFile(e.getFile()); } @Override public void contentsChanged(... | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/41bbb98aea15f2dec26e77580e3200ec838f6d2d/LocalVcsService.java/buggy/LocalVcs/src/com/intellij/localvcs/integration/LocalVcsService.java | [
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