rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
|---|---|---|---|---|---|---|
if dir: if not os.path.exists(dir): os.mkdir(dir, 0o700) else: print("Cannot determine location of $HOME. Not storing default user") return False | if not os.path.exists(dir): os.mkdir(dir, 0o700) | def _save_user_info(self, username, passwd, dir, file_name): ''' Save username and password in file "dir + file_name" If it's saved properly, return True, or else return False. ''' try: if dir: if not os.path.exists(dir): os.mkdir(dir, 0o700) else: print("Cannot determine location of $HOME. Not storing default user") return False csvfilepath = dir + file_name csvfile = open(csvfilepath, 'w') os.chmod(csvfilepath, 0o600) writer = csv.writer(csvfile) writer.writerow([username, passwd]) csvfile.close() except Exception as e: # just not store it print(e, "\nCannot write ~/.bind10/default_user.csv; default user is not stored") return False | 6000bb171b66735393843be9a3cb2ab34f01c634 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/6792/6000bb171b66735393843be9a3cb2ab34f01c634/bindcmd.py | [
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if _debug: print "\t%s: Called Plane.__init__()" % rendererName | Item.__init__(self) debugMsg("Called Plane.__init__()") | def __init__(self,scene): """ Initialisation of the Plane object """ if _debug: print "\t%s: Called Plane.__init__()" % rendererName | 431189e7e535c0ce614e7ffbef2068439f08912a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8476/431189e7e535c0ce614e7ffbef2068439f08912a/plane.py | [
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content = content.encode('iso-8859-15', 'replace') | content = content.encode('Windows-1252', 'replace') | def post(self, content): if isinstance(content, unicode): content = content.encode('iso-8859-15', 'replace') | c4d8f7de2e451f8490c489c44dbd9103cebc38bb /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/7471/c4d8f7de2e451f8490c489c44dbd9103cebc38bb/contact_thread.py | [
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for group in sorted(available, key=lambda x: x.nameByLang(mylang)): | for group in available: | def returnGroupLists(self, userlist): | 6be024406dc4d862c1e43975fa7754f098cc04ff /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/5445/6be024406dc4d862c1e43975fa7754f098cc04ff/cli.py | [
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' in ' + input | ' in ' + build_file | def ExpandVariables(input, is_late, variables, build_file): # Look for the pattern that gets expanded into variables if not is_late: variable_re = early_variable_re else: variable_re = late_variable_re matches = map(None, variable_re.finditer(input)) output = input if matches != None: # Reverse the list of matches so that replacements are done right-to-left. # That ensures that earlier replacements won't mess up the string in a # way that causes later calls to find the earlier substituted text instead # of what's intended for replacement. matches.reverse() for match_group in matches: match = match_group.groupdict() # match['replace'] is the substring to look for, match['type'] # is the character code for the replacement type (< > <! >! <@ # >@ <!@ >!@), match['is_array'] contains a '[' for command # arrays, and match['content'] is the name of the variable (< >) # or command to run (<! >!). # run_command is true if a ! variant is used. run_command = '!' in match['type'] # expand_to_list is true if an @ variant is used. In that case, # the expansion should result in a list. Note that the caller # is to be expecting a list in return, and not all callers do # because not all are working in list context. Also, for list # expansions, there can be no other text besides the variable # expansion in the input. expand_to_list = '@' in match['type'] and input == match['replace'] if run_command: # Run the command in the build file's directory. build_file_dir = os.path.dirname(build_file) if build_file_dir == '': # If build_file is just a leaf filename indicating a file in the # current directory, build_file_dir might be an empty string. Set # it to None to signal to subprocess.Popen that it should run the # command in the current directory. build_file_dir = None if match['is_array']: command = eval('[%s]' % match['content']) else: command = match['content'] p = subprocess.Popen(command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd=build_file_dir) (p_stdout, p_stderr) = p.communicate() if p.wait() != 0 or p_stderr: sys.stderr.write(p_stderr) # Simulate check_call behavior by reusing its exception. raise subprocess.CalledProcessError(p.returncode, command) replacement = p_stdout.rstrip() else: if not match['content'] in variables: raise KeyError, 'Undefined variable ' + match['content'] + \ ' in ' + input replacement = variables[match['content']] if isinstance(replacement, list): for item in replacement: if not isinstance(item, str) and not isinstance(item, int): raise TypeError, 'Variable ' + match['content'] + \ ' must expand to a string or list of strings; ' + \ 'list contains a ' + \ item.__class__.__name__ # Run through the list and handle variable expansions in it. Since # the list is guaranteed not to contain dicts, this won't do anything # with conditions sections. # # TODO(mark): I think this should be made more general: any time an # expansion is done, if there are more expandable tokens left in the # output, additional expansion phases should be done. It should not # be effective solely for lists. ProcessVariablesAndConditionsInList(replacement, is_late, variables, build_file) elif not isinstance(replacement, str) and \ not isinstance(replacement, int): raise TypeError, 'Variable ' + match['content'] + \ ' must expand to a string or list of strings; ' + \ 'found a ' + replacement.__class__.__name__ if expand_to_list: # Expanding in list context. It's guaranteed that there's only one # replacement to do in |input| and that it's this replacement. See # above. if isinstance(replacement, list): # If it's already a list, make a copy. output = replacement[:] else: # Split it the same way sh would split arguments. output = shlex.split(str(replacement)) else: # Expanding in string context. if isinstance(replacement, list): # When expanding a list into string context, turn the list items # into a string in a way that will work with a subprocess call. # # TODO(mark): This isn't completely correct. This should # call a generator-provided function that observes the # proper list-to-argument quoting rules on a specific # platform instead of just calling the POSIX encoding # routine. output = "".join([output[:match_group.start('replace')], gyp.common.EncodePOSIXShellList(replacement), output[match_group.end('replace'):]]) else: # Expanding into string context is easy, just replace it. output = "".join([output[:match_group.start('replace')], str(replacement), output[match_group.end('replace'):]]) return output | ac5e1106245db7117ff502314437cd6ee4ffad65 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/6220/ac5e1106245db7117ff502314437cd6ee4ffad65/input.py | [
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if self.has_handler('template.xhtml'): | try: | def get_template(self): if self.has_handler('template.xhtml'): return self.get_handler('template.xhtml') # Default, aruni return self.get_handler('/ui/aruni/template.xhtml') | 561b04b86500f7f67e69de0f03a500447abb6080 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/12681/561b04b86500f7f67e69de0f03a500447abb6080/skins.py | [
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print "%d %d %d" % (len (data), len (cdata), len (bdata)) EXEDATA = """ eNrtfQt4U9eV7pEl28IIJIJNlMRJlCBaN3JcE5uMiYDK2HJMsI1s2TIkDsbYMrLwK9IRj4akENkT DhvlMU06aW/bSZp2pnMnM5OZ5jY0bYONSQzkwcMp0JJpIO1NZQyEJATMU/df+2z5BalnvszMN/f7 fPi29jl7r7X2WmuvvdbaW0em9P6nJK0kSTqUWEyStknq5ZDGv46iTL31tanSK5PeuW2bpuSd2yp9 TUFLe6BtVaCuxVJf19raJltWei2BUKulqdVSuMRtaWlr8GZNmZJiFTT66x9r/ceEE/Pj5eAtR+e/ hDrrlg/n/zPqitujvN57c2z+TzjMyfmfCdgXeP9HvPbrjnO8iqZ6H/XFeXQ5JalEo5M8rxTPHebb qJmsSVKFdKltf1OCD1P82aHem1S9SNJwLT0v4HAl8E+TeDYNtZtG6Ci1UpK20s1TkuRLkP7zLvC5 VfPF3Vmyd51MkiwQDDnGMIbLIkkrsgINdXKdJL0/WchuGtaJNGwLjiwVTCrMwscKFZnXo+G6sgLB QL0kZH1K0Nt4NT1p4pq4Jq6Ja+KauCauiWvimrgmrolr4vpvvarYCebUe9jpzi65aou+Y7e8ZOP5 mlDhlmKNY+P57A3RjedzHp2x8XyrPHnj+UDot28mTSka6HszKaVo4EykVO/Xl7tiaaddDim80zAv JaSj/s1JIFk08I+bpxY5Bv5u41ek5Q/29HiYbNV7ooftkrSMTXllnUOKFGoS2JSXcde5+0VqCKV7 otvQ7wDJ50HS43qReqM/RNvAHa7yWNogWpfxxs6uZfKNPtMKh+SKrkO/JzaHwzbjPrzTtLwHgm06 YcIO2e2pVvtiab8COpvzY+LWO4hySdpOFKpdivNM7CAkYIc7j8jfjDkH3ZHO01diMV86DRBLc5SD 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def ready(self): | def ready(self, **kwargs): | def ready(self): """Wait till broker is ready to serve clients""" # First make sure the broker is listening by checking the log. if not retry(self.log_ready): raise Exception("Timed out waiting for broker %s" % self.name) # Make a connection, this will wait for extended cluster init to finish. try: self.connect().close() except: raise RethrownException("Broker %s failed ready test"%self.name) | cf463e5c3dd8f3db8add41684f3b8a733333768c /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/197/cf463e5c3dd8f3db8add41684f3b8a733333768c/brokertest.py | [
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return Column(self.name, self.type, fk, self.default, key = self.key, primary_key = self.primary_key, nullable=self.nullable, hidden=self.hidden) | return Column(self.name, self.type, fk, self.default, key = self.key, primary_key = self.primary_key, nullable = self.nullable, hidden = self.hidden) | def copy(self): """creates a copy of this Column, unitialized""" if self.foreign_key is None: fk = None else: fk = self.foreign_key.copy() return Column(self.name, self.type, fk, self.default, key = self.key, primary_key = self.primary_key, nullable=self.nullable, hidden=self.hidden) | f70f641dd69e98251089453b8fc5a94799c4a12d /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/1074/f70f641dd69e98251089453b8fc5a94799c4a12d/schema.py | [
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qname = get_attribute_qname(attr_uri, attr_name) | def get_start_tag(tag_uri, tag_name, attributes): s = '<%s' % get_qname(tag_uri, tag_name) # Output the attributes for attr_uri, attr_name in attributes: value = attributes[(attr_uri, attr_name)] qname = get_attribute_qname(attr_uri, attr_name) datatype = get_datatype_by_uri(attr_uri, attr_name) value = datatype.encode(value) value = XMLAttribute.encode(value) s += ' %s="%s"' % (qname, value) # Close the start tag if is_empty(tag_uri, tag_name): return s + '/>' else: return s + '>' | 47f88652c25e1545e05c48f69656d6228d64b080 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/12681/47f88652c25e1545e05c48f69656d6228d64b080/xml.py | [
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keyval['Efficieny'] = keyval[keys[0]]/keyval['CPU'] | if keyval['CPU_C'] != 0: keyval['Efficieny_C'] = keyval[keys[0]]/keyval['CPU_C'] else: keyval['Efficieny_C'] = keyval[keys[0]] | def postprocess(self): if self.role == 'client': if len(self.stream_list) != len(self.results): raise error.TestError('Mismatched number of results') | 6993d7951b92c075ed4b9898f681fed8ed695618 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/10349/6993d7951b92c075ed4b9898f681fed8ed695618/netperf2.py | [
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while lst > sch0[0]: try: sch0 = schedule.pop(0) except IndexError: print "Schedule out of commands! Do something! Forget about music!" sys.exit(1) print "Passed threshold", sch0[0], "<", lst, "for region", sch0[1] newsong = True if newsong: for region in songLookup.keys: if sch0[1].find(region) >= 0: print "New song!", sch0[1], "matches", region playSong(region) break else: print "Could not find song match for", sch0[1] time.sleep(5) | try: while lst > schedule[1][0]: schedule.pop(0) print "Passed threshold", schedule[0][0], "<", lst, \ "for region", schedule[0][1] newsong = True if newsong: for region in songLookup.iterkeys(): if schedule[0][1].find(region) >= 0: print "New song!", schedule[0][1], "matches", region playSong(region) break else: print "Could not find song match for", schedule[0][1] time.sleep(5) except IndexError: print "Schedule out of commands! Do something! Forget about music!" sys.exit(1) | def playSong(key): client.connect(mpdHost, mpdPort) client.password(mpdPass) songs = songLookup[key] song = songs[random.randint(0, len(songs)-1)] pl = client.playlist() if song['file'] in pl: client.play(pl.index(song['file'])) else: client.add(song['file']) client.play(len(pl)) #length one higher now, with added song client.close() client.disconnect() | 53efdec748405816d41c7667e1b1f87d1c4a08dc /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/2109/53efdec748405816d41c7667e1b1f87d1c4a08dc/singalong.py | [
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See also ``SearchForest` and ``TransitiveIdealGraded``. | See also :class:`~sage.combinat.backtrack.SearchForest` and :class:`~sage.combinat.backtrack.TransitiveIdealGraded`. | sage: def succ(l): | 3b920682c3696da31e45456293d7345f176f2bee /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/9417/3b920682c3696da31e45456293d7345f176f2bee/backtrack.py | [
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print("\nThis run ({0}) did not reproduce the issue.".format(i)) | print("\nThis run (%d) did not reproduce the issue." % (i)) | def runTest(i): """Start a subprocess that runs the java reproducer. If it hangs, let the user know and leave the subprocess process running until the user presses a key. If it runs for DURATION_IN_SECONDS seconds without hanging, kill the subprocess and repeat.""" print "\nBeginning run {0} for {1} seconds. Press ENTER or RETURN to end the test.\n".format(i, DURATION_IN_SECONDS) p = Popen("java LBDLockPatternTest", shell=True, bufsize=0, stdout=PIPE) # make the process's output non-blocking fd = p.stdout.fileno() fl = fcntl.fcntl(fd, fcntl.F_GETFL) fcntl.fcntl(fd, fcntl.F_SETFL, fl | os.O_NONBLOCK) # get the current time and init some variables start = datetime.datetime.utcnow() prevnow = start # the last time a progress time was printed lastdotprinted = start # the last time a dot was successfully read # while the java process isn't dead while p.poll() == None: now = datetime.datetime.utcnow() # print a progress time out every 10 seconds if (now - prevnow).seconds == 10: prevnow = now sys.stdout.write(" {0} seconds ".format((now - start).seconds)) # if no dots read in 10 seconds, then we assume the java proc has hung if (now - lastdotprinted).seconds > 10: print("\nSorry, this platfrom has reproduced the issue. Press any key to end this script.") raw_input() killProcess(p) return False # if all's gone well for DURATION_IN_SECONDS, we kill the proc and return true if (now - start).seconds > DURATION_IN_SECONDS: print("\nThis run ({0}) did not reproduce the issue.".format(i)) killProcess(p) return True # do a non-blocking input read to see if the user wants to stop try: c = sys.stdin.read(1) print("\nThis run ({0}) interrupted by user.".format(i)) killProcess(p) sys.exit(-1) except: pass # do a non-blocking java-output read to see if a dot has been printed try: c = p.stdout.read(1) sys.stdout.write(c) lastdotprinted = now except: time.sleep(0.1) # before the function exits, make sure the process is gone p.wait() | c2c051062c8ec1e0ed56dadadecc6fa7b1244303 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12204/c2c051062c8ec1e0ed56dadadecc6fa7b1244303/testrunner.py | [
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LOG('Zope', WARNING, 'user %s is not authorized to access %s' \ % (name, parent.absolute_url())) | def validate(self,request,auth='',roles=None): parent=request['PARENTS'][0] e=request.environ if e.has_key('REMOTE_USER'): name=e['REMOTE_USER'] else: for ob in self.getUsers(): domains=ob.getDomains() if domains: if ob.authenticate('', request): if ob.allowed(parent, roles): ob=ob.__of__(self) return ob nobody=self._nobody if self._isTop() and nobody.allowed(parent, roles): ob=nobody.__of__(self) return ob return None | b524eb8d385b3d37d4c9cdb4f50ab88b14c32c5d /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9658/b524eb8d385b3d37d4c9cdb4f50ab88b14c32c5d/User.py | [
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for outputModule in outputModulesList: for counter in range(len(wfile.outputDatasets())): | for outputModule, numDS in outputModulesList: for counter in range(numDS): | def add(self, workflowFile): """ _add_ Add a dataset to the list of watched datasets. Arguments: workflowFile -- the workflow specification file Return: the datasetId | ad6eafee66846ec4dc537a2bdf25160bba76d107 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/8887/ad6eafee66846ec4dc537a2bdf25160bba76d107/WatchedDatasets.py | [
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pManager.manager.DebugStr('cNeighbourOwl '+ __version__ +': PONG for '+str(self.IP)+':'+str(self.iPort)+' could not be sent (TypeError).') pManager.manager.DebugStr('cNeighbourOwl '+ __version__ +': Content of PONG: '+sPong) | pManager.manager.DebugStr('cNeighbourOwl '+ __version__ +': PONG for '+str(self.IP)+':'+str(self.iPort)+' could not be sent (TypeError).', 2) pManager.manager.DebugStr('cNeighbourOwl '+ __version__ +': Content of PONG: '+sPong, 3) | def Pong(self, sPong): """Pong owl""" | e17fbeafbd8fe4fbd118c6cba7484fbf380f5539 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2853/e17fbeafbd8fe4fbd118c6cba7484fbf380f5539/cNeighbourOwl.py | [
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states = State.objects.filter(region = user_permission.region_operated) districts = District.objects.filter(state__in = states) | districts = districts | District.objects.filter(district_name = user_permission.district_operated) | def get_user_districts(request): #print request.session.get('username') #print request.session.get('user_id') user_permissions = UserPermission.objects.filter(username = request.session.get('user_id')) districts = District.objects.none() for user_permission in user_permissions: if(user_permission.role=='A'): districts = districts | District.objects.all() if(user_permission.role=='D'): states = State.objects.filter(region = user_permission.region_operated) districts = District.objects.filter(state__in = states) if(user_permission.role=='F'): states = State.objects.filter(region = user_permission.region_operated) districts = District.objects.filter(state__in = states) return villages | 1ec3e0ad591dc79b974325f52365962049c5fafc /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11995/1ec3e0ad591dc79b974325f52365962049c5fafc/views.py | [
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""" I = ([f.homogenize(var) for f in self.gens()]) P = I[0].parent() return P.ideal(I) | sage: I = Ideal([x^2*y + z^3 + y^2*x, x + y^2 + 1]) sage: I.homogenize() Ideal (x^2*y + x*y^2 + z^3, y^2 + x*h + h^2) of Multivariate Polynomial Ring in x, y, z, h over Finite Field of size 2 """ I = [f.homogenize(var) for f in self.gens()] P = max(I, key=lambda x: x.parent().ngens()).parent() return P.ideal([P(f) for f in I]) | def homogenize(self, var='h'): """ Return homogeneous ideal spanned by the homogeneous polynomials generated by homogenizing the generators of this ideal. | 467f034f1639566ab640403eb31f1bd27474205d /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9890/467f034f1639566ab640403eb31f1bd27474205d/multi_polynomial_ideal.py | [
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result = method(*json_req['params']) | result = method(*req_data['params']) | def jsonaction(self): request_body = self.servlet().request().rawInput().read() req_data = jsonToObj(request_body) req_id = req_data['id'] try: method_name = req_data['method'] if method_name not in self.jsonMethods(): raise HTTPForbidden( "The method %s is not public" % method_name) method = getattr(self.servlet(), method_name) result = method(*json_req['params']) json_res = {'id': req_id, 'result': result, 'error': None} json_res = objToJson(json_res) except Exception, e: if isinstance(e, httpexceptions.HTTPException): raise out = StringIO() traceback.print_exc(file=out) json_res = {'id': req_id, 'result': None, 'error': out.getvalue()} json_res = objToJon(json_res) self.servlet().response().write(json_res) self.servlet().setView(None) | e648a9ebbb2bae9112d13986cc7d827062fcb39c /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/11400/e648a9ebbb2bae9112d13986cc7d827062fcb39c/jsoncomponent.py | [
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if not c.self_closing: | if not c.self_closing: | def to_html(self): s = u'' open_containers = collections.deque() in_p = False for c in self.content: if isinstance(c, basestring): s += c elif c is None: if c.name == 'P': in_p = False p = open_containers.pop() s += p.close_html() else: if c.name == 'P': in_p = True elif c.name == 'CR': s += '<br />' if in_p else '<p>' else: s += c.to_html() if not c.self_closing: open_containers.append(c) if len(open_containers) > 0: raise LRFParseError('Malformed text stream %s'%([i.name for i in open_containers if isinstance(i, Text.TextTag)],)) return s | ba816d3efc046d3a5b6ebcb2c44b09903d438cb6 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/9125/ba816d3efc046d3a5b6ebcb2c44b09903d438cb6/objects.py | [
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os.system('source %s &'%(os.path.abspath(t))) | P = os.path.abspath(t) os.system('chmod +x %s; %s &'%(P, P)) | def serve(self, port=8200, open_viewer=False): """ Start a web server for this repository. | 817eb9dfac9d67b9932509762116cd6882d05f3c /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9890/817eb9dfac9d67b9932509762116cd6882d05f3c/hg.py | [
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self._alignment.length = line.split()[2] | parts = line.replace(" ","").split("=") assert len(parts)==2, "Unrecognised format length line" self._alignment.length = parts[1] | def length(self, line): self._alignment.length = line.split()[2] self._alignment.length = _safe_int(self._alignment.length) | c419c20c8b2d6e3f9102980f558145631d0652f8 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/7167/c419c20c8b2d6e3f9102980f558145631d0652f8/NCBIStandalone.py | [
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class _cpu: | class _cpu(object): | def GetInputFileMD5(): """ Return the MD5 hash of the input binary file @return: MD5 string or None on error """ return idc.GetInputMD5() | 56a2d59a0c6b1a0a46ece691c68cd5b2556c786c /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/3410/56a2d59a0c6b1a0a46ece691c68cd5b2556c786c/idautils.py | [
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if not forum.category.has_access(request.user): return HttpResponseForbidden() | def add_post(request, forum_id, topic_id): forum = None topic = None posts = None if forum_id: forum = get_object_or_404(Forum, pk=forum_id) elif topic_id: topic = get_object_or_404(Topic, pk=topic_id) posts = topic.posts.all().select_related() if topic and topic.closed: return HttpResponseRedirect(topic.get_absolute_url()) if not forum.category.has_access(request.user): return HttpResponseForbidden() ip = request.META.get('REMOTE_ADDR', '') form = build_form(AddPostForm, request, topic=topic, forum=forum, user=request.user, ip=ip, initial={'markup': request.user.forum_profile.markup}) if 'post_id' in request.GET: post_id = request.GET['post_id'] post = get_object_or_404(Post, pk=post_id) form.fields['body'].initial = "[quote=%s]%s[/quote]" % (post.user, post.body) if form.is_valid(): post = form.save(); return HttpResponseRedirect(post.get_absolute_url()) return {'form': form, 'posts': posts, 'topic': topic, 'forum': forum, } | ffc5e1c559f55ff863cc68003ecef76705c20150 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/13701/ffc5e1c559f55ff863cc68003ecef76705c20150/views.py | [
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Return True if d can be used as a vector for self. | Return ``True`` if ``d`` can be used as a vector for ``self``. | def is_vector(self, d): """ Return True if d can be used as a vector for self. EXAMPLE:: sage: sr = mq.SR() sage: sr SR(1,1,1,4) sage: k = sr.base_ring() sage: A = Matrix(k, 1, 1, [k.gen()]) sage: B = sr.vector(A) sage: sr.is_vector(A) False sage: sr.is_vector(B) True """ return is_Matrix(d) and \ d.nrows() == self.r*self.c*self.e and \ d.ncols() == 1 and \ d.base_ring() == self.base_ring() | f145241e51a69266a2640a052ee008637b5d9160 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/9890/f145241e51a69266a2640a052ee008637b5d9160/sr.py | [
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rr_name = self.pool.get(rr._table_name).name_get(cr, uid, [rr.id]) | rr_name = self.pool.get(rr._table_name).name_get(cr, uid, [rr.id], context=context) | def selection_field(in_field): col_obj = self.pool.get(in_field.keys()[0]) if f[i] in col_obj._columns.keys(): return col_obj._columns[f[i]] elif f[i] in col_obj._inherits.keys(): selection_field(col_obj._inherits) else: return False | 41382b99106bb7be58c4133724ea1e6d5936e6d7 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12853/41382b99106bb7be58c4133724ea1e6d5936e6d7/orm.py | [
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self.client.ok_message.append(_('Items edited OK')) | self.client.ok_message.append(self._('Items edited OK')) | def handle(self): """Performs an edit of all of a class' items in one go. | ade743793a8c591cf5f28a2d1c898d9c49ebe4f6 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/1906/ade743793a8c591cf5f28a2d1c898d9c49ebe4f6/actions.py | [
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formattedToday = str(today.year) + str(today.month) + str(today.day) | formattedStartDate = str(today.year) + '03' + '07' | def scrapeCourt(courtID, result): if (courtID == 1): """ PDFs are available from the first circuit if you go to their RSS feed. So go to their RSS feed we shall. This is the second version of this court. Good times. """ url = "http://www.ca1.uscourts.gov/opinions/opinionrss.php" ct = Court.objects.get(courtUUID='ca1') req = urllib2.urlopen(url) # this code gets rid of errant ampersands - they throw big errors. contents = req.read() if '&' in contents: punctuationRegex = re.compile(" & ") contents = re.sub(punctuationRegex, " & ", contents) tree = etree.fromstring(contents) else: tree = etree.fromstring(contents) caseLinks = tree.xpath("//item/link") descriptions = tree.xpath("//item/description") docTypes = tree.xpath("//item/category") caseNamesAndNumbers = tree.xpath("//item/title") caseDateRegex = re.compile("(\d{2}/\d{2}/\d{4})", re.VERBOSE | re.DOTALL) caseNumberRegex = re.compile("(\d{2}-.*?\W)(.*)$") i = 0 dupCount = 0 while i < len(caseLinks): # First: docType, since we don't support them all... docType = docTypes[i].text.strip() if "unpublished" in docType.lower(): documentType = "U" elif "published" in docType.lower(): documentType = "P" elif "errata" in docType.lower(): documentType = "E" else: # something weird we don't know about, punt i += 1 continue # next, we begin with the caseLink field caseLink = caseLinks[i].text caseLink = make_url_absolute(url, caseLink) # then we download the PDF, make the hash and document myFile, doc, created, dupCount = makeDocFromURL(caseLink, ct, dupCount) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # otherwise, we continue doc.documentType = documentType # next: caseDate caseDate = caseDateRegex.search(descriptions[i].text).group(1) splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]), int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # next: caseNumber caseNumber = caseNumberRegex.search(caseNamesAndNumbers[i].text)\ .group(1) # next: caseNameShort caseNameShort = caseNumberRegex.search(caseNamesAndNumbers[i].text)\ .group(2) # check for dups, make the object if necessary, otherwise, get it cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 2): """ queries can be made on their system via HTTP POST. """ # second circuit url = "http://www.ca2.uscourts.gov/decisions" ct = Court.objects.get(courtUUID='ca2') today = datetime.date.today() formattedToday = str(today.year) + str(today.month) + str(today.day) #formattedToday = str(today.year) + '03' + '07' data = "IW_DATABASE=OPN&IW_FIELD_TEXT=*&IW_FILTER_DATE_AFTER=" +\ formattedToday + "&IW_FILTER_DATE_BEFORE=&IW_BATCHSIZE=50&" +\ "IW_SORT=-DATE" req = urllib2.Request(url, data) response = urllib2.urlopen(req) html = response.read() soup = BeautifulSoup(html) aTagsRegex = re.compile('(.*?.pdf).*?', re.IGNORECASE) aTags = soup.findAll(attrs={'href' : aTagsRegex}) caseNumRegex = re.compile('.*/(.*?)_(.*?).pdf') i = 0 dupCount = 0 while i < len(aTags): # we begin with the caseLink field caseLink = aTags[i].get('href') caseLink = aTagsRegex.search(caseLink).group(1) caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber and documentType caseNum = caseNumRegex.search(caseLink).group(1) # and the docType documentType = caseNumRegex.search(caseLink).group(2) if 'opn' in documentType: # it's unpublished doc.documentType = "P" elif 'so' in documentType: doc.documentType = "U" # next, the caseNameShort (there's probably a better way to do this. caseNameShort = aTags[i].parent.parent.nextSibling.nextSibling\ .nextSibling.nextSibling.contents[0] # next, we can do the caseDate caseDate = aTags[i].parent.parent.nextSibling.nextSibling\ .nextSibling.nextSibling.nextSibling.nextSibling.contents[0]\ .replace(' ', ' ').strip() # some caseDate cleanup splitDate = caseDate.split('-') caseDate = datetime.date(int(splitDate[2]),int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # check for duplicates, make the object in their absence cite, created = hasDuplicate(caseNum, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 3): """ This URL provides the latest 25 cases, so I need to pick out the new ones and only get those. I can do this efficiently by trying to do each, and then giving up once I hit one that I've done before. This will work because they are in reverse chronological order. """ # if these URLs change, the docType identification (below) will need # to be updated. It's lazy, but effective. urls = ("http://www.ca3.uscourts.gov/recentop/week/recprec.htm", "http://www.ca3.uscourts.gov/recentop/week/recnon2day.htm",) ct = Court.objects.get(courtUUID='ca3') for url in urls: html = urllib2.urlopen(url) soup = BeautifulSoup(html) # all links ending in pdf, case insensitive regex = re.compile("pdf$", re.IGNORECASE) aTags = soup.findAll(attrs={"href": regex}) # we will use these vars in our while loop, better not to compile them # each time regexII = re.compile('\d{2}/\d{2}/\d{2}') regexIII = re.compile('\d{2}-\d{4}') i = 0 dupCount = 0 while i < len(aTags): # caseLink and caseNameShort caseLink = aTags[i].get('href') myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 caseNameShort = aTags[i].contents[0] # caseDate and caseNumber junk = aTags[i].previous.previous.previous try: # this error seems to happen upon dups...not sure why yet caseDate = regexII.search(junk).group(0) caseNumber = regexIII.search(junk).group(0) except: i = i+1 continue # next up is the caseDate splitDate = caseDate.split('/') caseDate = datetime.date(int("20" + splitDate[2]),int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # Make a decision about the docType. if "recprec.htm" in str(url): doc.documentType = "P" elif "recnon2day.htm" in str(url): doc.documentType = "U" cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 4): """The fourth circuit is THE worst form of HTML I've ever seen. It's going to break a lot, but I've done my best to clean it up, and make it reliable.""" url = "http://pacer.ca4.uscourts.gov/opinions_today.htm" ct = Court.objects.get(courtUUID='ca4') html = urllib2.urlopen(url).read() # sadly, beautifulsoup chokes on the lines lines of this file because # the HTML is so bad. Stop laughing - the HTML IS awful, but it's not # funny. Anyway, to make this thing work, we must pull out the target # attributes. And so we do. regex = re.compile("target.*>", re.IGNORECASE) html = re.sub(regex, ">", html) soup = BeautifulSoup(html) # all links ending in pdf, case insensitive regex = re.compile("pdf$", re.IGNORECASE) aTags = soup.findAll(attrs={"href": regex}) i = 0 dupCount = 0 regexII = re.compile('\d{2}/\d{2}/\d{4}') regexIII = re.compile('\d{4}(.*)') while i < len(aTags): # caseLink field, and save it caseLink = aTags[i].get('href') caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caselink, we can get the caseNumber and documentType fileName = caseLink.split('/')[-1] caseNumber, documentType = fileName.split('.')[0:2] # the caseNumber needs a hyphen inserted after the second digit caseNumber = caseNumber[0:2] + "-" + caseNumber[2:] doc.documentType = documentType # next, we do the caseDate and caseNameShort, so we can quit before # we get too far along. junk = aTags[i].contents[0].replace(' ', ' ').strip() try: # this error seems to happen upon dups...not sure why yet caseDate = regexII.search(junk).group(0).strip() caseNameShort = regexIII.search(junk).group(1).strip() except: i += 1 continue # some caseDate cleanup splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]),int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # let's check for duplicates before we proceed cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 5): """Fifth circuit scraper. Similar process as to elsewhere, as you might expect at this point""" url = "http://www.ca5.uscourts.gov/Opinions.aspx" ct = Court.objects.get(courtUUID='ca5') html = urllib2.urlopen(url) soup = BeautifulSoup(html) #all links ending in pdf, case insensitive aTagRegex = re.compile("pdf$", re.IGNORECASE) aTags = soup.findAll(attrs={"href": aTagRegex}) opinionRegex = re.compile(r"\opinions.*pub") unpubRegex = re.compile(r"\opinions\unpub") i = 0 dupCount = 0 while i < len(aTags): # this page has PDFs that aren't cases, we must filter them out if opinionRegex.search(str(aTags[i])) == None: # it's not an opinion, increment and punt i += 1 continue # we begin with the caseLink field caseLink = aTags[i].get('href') caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber and documentType caseNumber = aTags[i].contents[0] if unpubRegex.search(str(aTags[i])) == None: # it's published, else it's unpublished documentType = "P" else: documentType = "U" doc.documentType = documentType # next, we do the caseDate caseDate = aTags[i].next.next.contents[0].contents[0] # some caseDate cleanup splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]),int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # next, we do the caseNameShort caseNameShort = aTags[i].next.next.next.next.next.contents[0]\ .contents[0] # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 6): """Results are available without an HTML POST, but those results lack a date field. Hence, we must do an HTML POST.""" url = "http://www.ca6.uscourts.gov/cgi-bin/opinions.pl" ct = Court.objects.get(courtUUID = 'ca6') today = datetime.date.today() formattedToday = str(today.month) + '/' + str(today.day) + '/' +\ str(today.year) postValues = { 'CASENUM' : '', 'TITLE' : '', 'FROMDATE' : formattedToday, 'TODATE' : formattedToday, 'OPINNUM' : '' } data = urllib.urlencode(postValues) req = urllib2.Request(url, data) response = urllib2.urlopen(req) html = response.read() soup = BeautifulSoup(html) aTagsRegex = re.compile('pdf$', re.IGNORECASE) aTags = soup.findAll(attrs={'href' : aTagsRegex}) i = 0 dupCount = 0 while i < len(aTags): # we begin with the caseLink field caseLink = aTags[i].get('href') caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber and documentType caseNumber = aTags[i].next.next.next.next.next.contents[0].strip()\ .replace(' ','') # using the filename, we can determine the documentType... fileName = aTags[i].contents[0] if 'n' in fileName: # it's unpublished doc.documentType = "U" elif 'p' in fileName: doc.documentType = "P" # next, we can do the caseDate caseDate = aTags[i].next.next.next.next.next.next.next.next\ .contents[0].replace(' ', ' ').strip() # some caseDate cleanup splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[0]),int(splitDate[1]), int(splitDate[2])) doc.dateFiled = caseDate # next, the caseNameShort (there's probably a better way to do this. caseNameShort = aTags[i].next.next.next.next.next.next.next.next\ .next.next.next # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 7): """another court where we need to do a post. This will be a good starting place for getting the judge field, when we're ready for that""" url = "http://www.ca7.uscourts.gov/fdocs/docs.fwx" ct = Court.objects.get(courtUUID = 'ca7') # if these strings change, check that documentType still gets set correctly. dataStrings = ("yr=&num=&Submit=Today&dtype=Opinion&scrid=Select+a+Case", "yr=&num=&Submit=Today&dtype=Nonprecedential+Disposition&scrid=Select+a+Case") for dataString in dataStrings: req = urllib2.Request(url, dataString) response = urllib2.urlopen(req) html = response.read() soup = BeautifulSoup(html) aTagsRegex = re.compile('pdf$', re.IGNORECASE) aTags = soup.findAll(attrs={'href' : aTagsRegex}) i = 0 while i < len(aTags): # we begin with the caseLink field caseLink = aTags[i].get("href") caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber and documentType caseNumber = aTags[i].previous.previous.previous.previous.previous\ .previous.previous.previous.previous.previous.strip() # next up: caseDate caseDate = aTags[i].previous.previous.previous.contents[0].strip() splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]), int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # next up: caseNameShort caseNameShort = aTags[i].previous.previous.previous.previous\ .previous.previous.previous # next up: docStatus if "type=Opinion" in dataString: doc.documentType = 'P' elif "type=Nonprecedential+Disposition" in dataString: doc.documentType = 'U' # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 8): url = "http://www.ca8.uscourts.gov/cgi-bin/new/today2.pl" ct = Court.objects.get(courtUUID = 'ca8') html = urllib2.urlopen(url) soup = BeautifulSoup(html) aTagsRegex = re.compile('pdf$', re.IGNORECASE) aTags = soup.findAll(attrs={'href' : aTagsRegex}) caseNumRegex = re.compile('(\d{2})(\d{4})(u|p)', re.IGNORECASE) caseDateRegex = re.compile('(\d{2}/\d{2}/\d{4})(.*)(</b>)') i = 0 dupCount = 0 while i < len(aTags): # we begin with the caseLink field caseLink = aTags[i].get('href') caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber and documentType junk = aTags[i].contents[0] caseNumber = caseNumRegex.search(junk).group(1) + "-" +\ caseNumRegex.search(junk).group(2) documentType = caseNumRegex.search(junk).group(3).upper() doc.documentType = documentType # caseDate is next on the block junk = str(aTags[i].next.next.next) caseDate = caseDateRegex.search(junk).group(1)\ .replace(' ', ' ').strip() caseNameShort = caseDateRegex.search(junk).group(2) # some caseDate cleanup splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]),int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 9): """This court, by virtue of having a javascript laden website, was very hard to parse properly. BeautifulSoup couldn't handle it at all, so lxml has to be used. lxml seems pretty useful, but it was a pain to learn.""" urls = ("http://www.ca9.uscourts.gov/opinions/?o_mode=view&o_sort_field=19&o_sort_type=DESC&o_page_size=100", "http://www.ca9.uscourts.gov/memoranda/?o_mode=view&o_sort_field=21&o_sort_type=DESC&o_page_size=100",) ct = Court.objects.get(courtUUID = 'ca9') for url in urls: req = urllib2.urlopen(url).read() tree = fromstring(req) if url == urls[0]: caseLinks = tree.xpath('//table[3]/tbody/tr/td/a') caseNumbers = tree.xpath('//table[3]/tbody/tr/td[2]/label') caseDates = tree.xpath('//table[3]/tbody/tr/td[6]/label') elif url == urls[1]: caseLinks = tree.xpath('//table[3]/tbody/tr/td/a') caseNumbers = tree.xpath('//table[3]/tbody/tr/td[2]/label') caseDates = tree.xpath('//table[3]/tbody/tr/td[7]/label') i = 0 dupCount = 0 while i < len(caseLinks): # we begin with the caseLink field caseLink = caseLinks[i].get('href') caseLink = make_url_absolute(url, caseLink) # special case if 'no memos filed' in caseLink.lower(): i += 1 continue myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # next, we'll do the caseNumber caseNumber = caseNumbers[i].text # next up: document type (static for now) if 'memoranda' in url: doc.documentType = "U" elif 'opinions' in url: doc.documentType = "P" # next up: caseDate splitDate = caseDates[i].text.split('/') caseDate = datetime.date(int(splitDate[2]), int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate #next up: caseNameShort caseNameShort = titlecase(caseLinks[i].text.lower()) # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 10): url = "http://www.ck10.uscourts.gov/opinions/new/daily_decisions.rss" ct = Court.objects.get(courtUUID = 'ca10') req = urllib2.urlopen(url) # this code gets rid of errant ampersands - they throw big errors. contents = req.read() if '&' in contents: punctuationRegex = re.compile(" & ") contents = re.sub(punctuationRegex, " & ", contents) tree = etree.fromstring(contents) else: tree = etree.fromstring(contents) caseLinks = tree.xpath("//item/link") descriptions = tree.xpath("//item/description") docTypes = tree.xpath("//item/category") caseNames = tree.xpath("//item/title") caseDateRegex = re.compile("(\d{2}/\d{2}/\d{4})", re.VERBOSE | re.DOTALL) caseNumberRegex = re.compile("(\d{2}-\d{4})(.*)$") i = 0 dupCount = 0 while i < len(caseLinks): # we begin with the caseLink field caseLink = caseLinks[i].text caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # next: docType (this order of if statements IS correct) docType = docTypes[i].text.strip() if "unpublished" in docType.lower(): doc.documentType = "U" elif "published" in docType.lower(): doc.documentType = "P" else: # it's an errata, or something else we don't care about i += 1 continue # next: caseDate caseDate = caseDateRegex.search(descriptions[i].text).group(1) splitDate = caseDate.split('/') caseDate = datetime.date(int(splitDate[2]), int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate # next: caseNumber caseNumber = caseNumberRegex.search(descriptions[i].text)\ .group(1) # next: caseNameShort caseNameShort = caseNames[i].text # check for dups, make the object if necessary, otherwise, get it cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 11): """Trying out an RSS feed this time, since the feed looks good. This court lacks a feed for unpublished opinions, so we don't fetch them at present""" url = "http://www.ca11.uscourts.gov/rss/pubopnsfeed.php" ct = Court.objects.get(courtUUID = 'ca11') req = urllib2.urlopen(url) # this code gets rid of errant ampersands - they throw big errors. contents = req.read() if '&' in contents: punctuationRegex = re.compile(" & ") contents = re.sub(punctuationRegex, " & ", contents) tree = etree.fromstring(contents) else: tree = etree.fromstring(contents) caseLinks = tree.xpath('//item/link') description = tree.xpath('//item/description') caseNames = tree.xpath('//item/title') # some regexes caseNumRegex = re.compile(''' case # the word case .*? # some junk, not greedy (\d{2}-\d{5}) # two digits a hyphen then five more ''', re.IGNORECASE | re.VERBOSE) caseDateRegex = re.compile(''' date # the word date .*? # some junk, not greedy (\d{2}-\d{2}-\d{4}) # two digits - two digits - four digits ''', re.IGNORECASE | re.VERBOSE) i = 0 dupCount = 0 while i < len(caseLinks): # we begin with the caseLink field caseLink = caseLinks[i].text caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # these are only published opinions, unpublished lack a feed (boo!) doc.documentType = "P" # next, we'll do the caseNumber caseNumber = caseNumRegex.search(description[i].text).group(1) # next up: caseDate caseDate = caseDateRegex.search(description[i].text).group(1) splitDate = caseDate.split('-') caseDate = datetime.date(int(splitDate[2]), int(splitDate[0]), int(splitDate[1])) doc.dateFiled = caseDate #next up: caseNameShort caseNameShort = caseNames[i].text # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # if that goes well, we save to the DB doc.citation = cite # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 12): url = "http://www.cadc.uscourts.gov/bin/opinions/allopinions.asp" ct = Court.objects.get(courtUUID = 'cadc') html = urllib2.urlopen(url) soup = BeautifulSoup(html) aTagsRegex = re.compile('pdf$', re.IGNORECASE) aTags = soup.findAll(attrs={'href' : aTagsRegex}) caseNumRegex = re.compile("(\d{2}-\d{4})") i = 0 dupCount = 0 while i < len(aTags): # we begin with the caseLink field caseLink = aTags[i].get('href') caseLink = make_url_absolute(url, caseLink) myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # using caseLink, we can get the caseNumber caseNumber = caseNumRegex.search(caseLink).group(1) # we can hard-code this b/c the D.C. Court paywalls all # unpublished opinions. doc.documentType = "P" # caseDate is next on the block caseDate = datetime.date.today() doc.dateFiled = caseDate caseNameShort = aTags[i].next.next.next # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # if that goes well, we save to the DB doc.citation = cite # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result elif (courtID == 13): url = "http://www.cafc.uscourts.gov/dailylog.html" ct = Court.objects.get(courtUUID = "cafc") html = urllib2.urlopen(url) soup = BeautifulSoup(html) aTagsRegex = re.compile('pdf$', re.IGNORECASE) trTags = soup.findAll('tr') # start on the second row, since the first is headers. i = 1 dupCount = 0 while i <= 50: #stop at 50, if no triple dups first. try: caseLink = trTags[i].td.nextSibling.nextSibling.nextSibling\ .nextSibling.nextSibling.nextSibling.a.get('href').strip('.') caseLink = make_url_absolute(url, caseLink) if 'opinion' not in caseLink: # we have a non-case PDF. punt i += 1 continue except: # the above fails when things get funky, in that case, we punt i += 1 continue myFile, doc, created = makeDocFromURL(caseLink, ct) if not created: # it's an oldie, punt! result += "Duplicate found at " + str(i) + "<br>" dupCount += 1 if dupCount == 3: # third dup in a a row. BREAK! break i += 1 continue else: dupCount = 0 # next: caseNumber caseNumber = trTags[i].td.nextSibling.nextSibling.contents[0]\ .strip('.pdf') # next: dateFiled dateFiled = trTags[i].td.contents splitDate = dateFiled[0].split("/") dateFiled = datetime.date(int(splitDate[0]), int(splitDate[1]), int(splitDate[2])) doc.dateFiled = dateFiled # next: caseNameShort caseNameShort = trTags[i].td.nextSibling.nextSibling.nextSibling\ .nextSibling.nextSibling.nextSibling.a.contents[0] # next: documentType documentType = trTags[i].td.nextSibling.nextSibling.nextSibling\ .nextSibling.nextSibling.nextSibling.nextSibling.nextSibling\ .contents[0].contents[0] # normalize the result for our internal purposes... if documentType == 'N': documentType = 'U' doc.documentType = documentType # now that we have the caseNumber and caseNameShort, we can dup check cite, created = hasDuplicate(caseNumber, caseNameShort) # last, save evrything (pdf, citation and document) doc.citation = cite doc.local_path.save(caseNameShort + ".pdf", myFile) doc.save() i += 1 return result if (courtID == 14): # we do SCOTUS pass | 1cb7f4014a5290c6300b47a862966c4595810970 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/6762/1cb7f4014a5290c6300b47a862966c4595810970/views.py | [
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case_id = self.create(cr, uid, val) ids.append(case_id) | case_id = self.create(cr, uid, val) ids.append(case_id) | def import_cal(self, cr, uid, data, context={}): file_content = base64.decodestring(data) event_obj = self.pool.get('basic.calendar.event') event_obj.__attribute__.update(self.__attribute__) vals = event_obj.import_ical(cr, uid, file_content) ids = [] for val in vals: is_exists = common.uid2openobjectid(cr, val['id'], self._name) if val.has_key('create_date'): val.pop('create_date') val['caldav_url'] = context.get('url') or '' val.pop('id') if is_exists: self.write(cr, uid, [is_exists], val) ids.append(is_exists) else: case_id = self.create(cr, uid, val) ids.append(case_id) return ids | 75258015cae6ae0d493e7eb6204a16eafed73cd9 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/7397/75258015cae6ae0d493e7eb6204a16eafed73cd9/crm_meeting.py | [
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else: | if doc == 'geoserver': | def build(): # fix with pushd(download_path): with pushd(docs_path): for doc in config.options(section): info("Build docs for %s" % doc) app_doc = path(doc) with pushd(app_doc): if doc == 'geoext': sh("sphinx-build -bhtml . html") else: sh("sphinx-build -bhtml source html") | 9e70da551d35668cfe2fd1051e7da5e5e2be3221 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/3279/9e70da551d35668cfe2fd1051e7da5e5e2be3221/pavement.py | [
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\begin_inset | \begin_inset | def revert_listings_inset(document): r''' Revert listings inset to \lstinline or \begin, \end lstlisting, translate | dec8e81ebdf0e6978560ba351aaedd7878e8a79b /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/7514/dec8e81ebdf0e6978560ba351aaedd7878e8a79b/lyx_1_5.py | [
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heappushpop(result, elem) | _heappushpop(result, elem) | def nlargest(n, iterable): """Find the n largest elements in a dataset. Equivalent to: sorted(iterable, reverse=True)[:n] """ it = iter(iterable) result = list(islice(it, n)) if not result: return result heapify(result) _heappushpop = heappushpop for elem in it: heappushpop(result, elem) result.sort(reverse=True) return result | 005691263df8cc222d90402c57ad1b63a53deee9 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/8125/005691263df8cc222d90402c57ad1b63a53deee9/heapq.py | [
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self.write(cr, uid, ids, {'state':'confirmed'}) i=0 def create_chained_picking(self,cr,uid,moves,context): new_moves=[] | self.write(cr, uid, ids, {'state': 'confirmed'}) i = 0 def create_chained_picking(self, cr, uid, moves, context): new_moves = [] | def action_confirm(self, cr, uid, ids, context={}): | 369221b47101072e094ad2d02fe2edd2b47690aa /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/7397/369221b47101072e094ad2d02fe2edd2b47690aa/stock.py | [
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opts, args = getopt.getopt(sys.argv[1:], 'lfd:') | opts, args = getopt.getopt(sys.argv[1:], 'lfd:x:') | def main(): """Script main program.""" import getopt try: opts, args = getopt.getopt(sys.argv[1:], 'lfd:') except getopt.error, msg: print msg print "usage: compileall [-l] [-f] [-d destdir] [directory ...]" print "-l: don't recurse down" print "-f: force rebuild even if timestamps are up-to-date" print "-d destdir: purported directory name for error messages" print "if no directory arguments, -l sys.path is assumed" sys.exit(2) maxlevels = 10 ddir = None force = 0 for o, a in opts: if o == '-l': maxlevels = 0 if o == '-d': ddir = a if o == '-f': force = 1 if ddir: if len(args) != 1: print "-d destdir require exactly one directory argument" sys.exit(2) success = 1 try: if args: for dir in args: success = success and compile_dir(dir, maxlevels, ddir, force) else: success = compile_path() except KeyboardInterrupt: print "\n[interrupt]" success = 0 return success | 59776b466a8795b66b9c91444afb05cff217b099 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3187/59776b466a8795b66b9c91444afb05cff217b099/compileall.py | [
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ppcOnly = False elif platform.processor() == "powerpc": print "Building a PPC-only binary" ppcOnly = True | preferPPC = False | def addDataFiles(dataFiles, fromDir, toSubDir=None, inclHiddenDirs=False): """Find data files and format data for the data_files argument of setup. In/Out: - dataFiles: a list to which is appended zero or more of these elements: [subDir, list of paths to resource files] Inputs: - fromDir: path to root directory of existing resource files - toSubDir: relative path to resources in package; if omitted then the final dir of fromDir is used - inclHiddenDirs: if True, the contents of directories whose names start with "." are included Returns a list of the following elements: """ lenFromDir = len(fromDir) if toSubDir == None: toSubDir = os.path.split(fromDir)[1] for (dirPath, dirNames, fileNames) in os.walk(fromDir): if not inclHiddenDirs: dirNamesCopy = dirNames[:] for ii in range(len(dirNamesCopy)-1, -1, -1): if dirNamesCopy[ii].startswith("."): del(dirNames[ii]) if not dirPath.startswith(fromDir): raise RuntimeError("Cannot deal with %r files; %s does not start with %r" %\ (resBase, dirPath, fromDir)) toPath = os.path.join(toSubDir, dirPath[lenFromDir+1:]) filePaths = [os.path.join(dirPath, fileName) for fileName in fileNames] dataFiles.append((toPath, filePaths)) | 8ca36d123e004717e35e40dcd11394fcbb58f096 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/6236/8ca36d123e004717e35e40dcd11394fcbb58f096/setup.py | [
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print 'find_bzr', path | def find_bzr(path=None): """ Return bzr root directory path, or None. """ if not path: path = os.getcwd() if not os.path.exists(path): return None while path: print 'find_bzr', path if os.path.exists(os.path.join(path, '.bzr')) or \ os.path.exists(os.path.join(path, '.bzrignore')): return os.path.abspath(path) else: pth = path path = os.path.dirname(path) if path == pth: return None return None | 7df0fcf451721354710b28f5d16d4a7153c0c6da /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12610/7df0fcf451721354710b28f5d16d4a7153c0c6da/repo.py | [
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element_class = Set_generic | def _element_constructor_(self, x): """ TESTS:: sage: S3 = Subsets(3); S3([1,2]) {1, 2} sage: S3([0,1,2]) Traceback (most recent call last): ... ValueError: [0, 1, 2] not in Subsets of {1, 2, 3} """ return Set(x) element_class = Set_object_enumerated | def unrank(self, r): """ Returns the subset of s that has rank k. EXAMPLES:: sage: Subsets(3).unrank(0) {} sage: Subsets([2,4,5]).unrank(1) {2} sage: s = Subsets([2,4,5]) """ | dc716b96cd454a10479e28fc7daa50f2ef780219 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9890/dc716b96cd454a10479e28fc7daa50f2ef780219/subset.py | [
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def iter_packages(self, packages, selected, hint=False): | def iter_packages(self, packages, selected, hint=False, nuninst=None): | def iter_packages(self, packages, selected, hint=False): """Iter on the list of actions and apply them one-by-one | ab0576817151497fdda52a6927ea2e47cb997bd6 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2784/ab0576817151497fdda52a6927ea2e47cb997bd6/britney.py | [
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curObj = None if self._curObjRef is None: self._curObjRef = self._baseObjRef | if curObjRef is None: startRefWorkingList = workingListSelector.next() while True: yield None try: curObjRef = startRefWorkingList.refGen.next() break except StopIteration: if len(startRefWorkingList.source) == 0: break for flywheel in makeFlywheelGen( startRefWorkingList.source.values(), countFunc=lambda x: self.getStartObjAffinity(x), scale=.05): yield None startRefWorkingList.refGen = flywheel if curObjRef is None: continue if type(curObjRef) in (types.IntType, types.LongType): startId = curObjRef curObjRef = None try: for containerRef in self._leakDetector.getContainerByIdGen(startId): yield None except: self.notify.debug('invalid startRef, stored as id %s' % startId) self._leakDetector.removeContainerById(startId) continue curObjRef = containerRef | def run(self): try: while True: # yield up here instead of at the end, since we skip back to the # top of the while loop from various points yield None #import pdb;pdb.set_trace() curObj = None if self._curObjRef is None: self._curObjRef = self._baseObjRef try: for result in self._curObjRef.getContainer(): yield None curObj = result except: self.notify.debug('lost current container: %s' % self._curObjRef) # that container is gone, try again self._curObjRef = None continue self.notify.debug('--> %s' % self._curObjRef) | d9560fa19bec29d4ea08e0b58cd1b7384659f9ff /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/7242/d9560fa19bec29d4ea08e0b58cd1b7384659f9ff/ContainerLeakDetector.py | [
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print "Group order now ",n1*n2,"=",n1,"*",n2 | print "Subgroup order now ",n1*n2,"=",n1,"*",n2 | def abelian_group(self, debug=False): r""" Returns the abelian group structure of the group of points on this elliptic curve. | 7e0308bfa96d392f0529a28f30a5ec4774dcfbb8 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9890/7e0308bfa96d392f0529a28f30a5ec4774dcfbb8/ell_finite_field.py | [
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if xsource.find('Recommended').text == 'true': | if xsource.find('Recommended').text in ['True', 'true']: | def source_from_xml(xsource): ret = dict([('rawurl', False), ('url', False)]) for key, tag in [('groups', 'Group'), ('components', 'Component'), ('arches', 'Arch'), ('blacklist', 'Blacklist')]: ret[key] = [item.text for item in xsource.findall(tag)] # version and component need to both contain data for sources to work try: ret['version'] = xsource.find('Version').text except: ret['version'] = 'placeholder' if ret['components'] == []: ret['components'] = ['placeholder'] try: if xsource.find('Recommended').text == 'true': ret['recommended'] = True except: ret['recommended'] = False if xsource.find('RawURL') is not None: ret['rawurl'] = xsource.find('RawURL').text if not ret['rawurl'].endswith('/'): ret['rawurl'] += '/' else: ret['url'] = xsource.find('URL').text if not ret['url'].endswith('/'): ret['url'] += '/' return ret | c688c4592be717cb28dabd13d6441c4c7c5bca06 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11867/c688c4592be717cb28dabd13d6441c4c7c5bca06/Packages.py | [
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paragraph_element = content_context.get_element_list('//text:p') | paragraph_element = content_context.get_element_list('//text:p[1]') | def setUp(self): container = get_odf_container('samples/example.odt') self.container = container content_context = odf_context('content', container) self.content_context = content_context # TODO make "//text:p[0]" pass paragraph_element = content_context.get_element_list('//text:p') self.paragraph_element = paragraph_element[0] | c9486ff7a8d654b48e9af6077ea60fa81b536bfe /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/10612/c9486ff7a8d654b48e9af6077ea60fa81b536bfe/test_context.py | [
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a(formatstring((header for k in months), colwidth, c).rstrip()) | headers = (header for k in months) a(formatstring(headers, colwidth, c).rstrip()) | def formatyear(self, theyear, w=2, l=1, c=6, m=3): """ Returns a year's calendar as a multi-line string. """ w = max(2, w) l = max(1, l) c = max(2, c) colwidth = (w + 1) * 7 - 1 v = [] a = v.append a(repr(theyear).center(colwidth*m+c*(m-1)).rstrip()) a('\n'*l) header = self.formatweekheader(w) for (i, row) in enumerate(self.yeardays2calendar(theyear, m)): # months in this row months = xrange(m*i+1, min(m*(i+1)+1, 13)) a('\n'*l) a(formatstring((month_name[k] for k in months), colwidth, c).rstrip()) a('\n'*l) a(formatstring((header for k in months), colwidth, c).rstrip()) a('\n'*l) # max number of weeks for this row height = max(len(cal) for cal in row) for j in xrange(height): weeks = [] for cal in row: if j >= len(cal): weeks.append('') else: weeks.append(self.formatweek(cal[j], w)) a(formatstring(weeks, colwidth, c).rstrip()) a('\n' * l) return ''.join(v) | 243815ee949d8494ecadb24f0872307909b05fc8 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8125/243815ee949d8494ecadb24f0872307909b05fc8/calendar.py | [
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for i in l + [n[1]]: | for i in l: self.ui.debug("narrowing %d:%d %s\n" % (f, len(l), short(i))) | def getchangegroup(self, remote): m = self.changelog.nodemap search = [] fetch = [] seen = {} seenbranch = {} | 3832fb88ce2f811c47b456520408be17f4aae77b /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/11312/3832fb88ce2f811c47b456520408be17f4aae77b/hg.py | [
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if verify: flag = gas.solve(crval) else: flag = gas.solve() | xy = afwImage.PointD(1,1) rd = afwImage.PointD(334.2762566, -17.2097954) self.checkMatch(rd, xy) | def solveOrVerify(self, starlist, crval, crpix, plateScale=0, verify=False): """Test the solve() function Input: starlist List of objects as returned by loadXYFromFile crval lsst.afw.image.PointD ra/dec of a known position on the image crpix lsst.afw.image.PointD xy of a known position on the image plateScale Size of image in arcsec/pixel. Specifing this dramatically improves search time verify If True, crval is passed to to solve() to speed up the match, otherwise a solution is found with no inital guess at the position """ #Set plate scale if plateScale > 0: gas.setImageScaleArcsecPerPixel(plateScale) #Set starlist starlist = loadXYFromFile(starlist) gas.setStarlist(starlist) #Run solver if verify: flag = gas.solve(crval) else: flag = gas.solve() | 4f02d21d4da7291cf5f3245909c3dc640b3fce4d /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/6522/4f02d21d4da7291cf5f3245909c3dc640b3fce4d/GlobalAstrometrySolution.py | [
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def killed(self): | def killed(self): | def killed(self): #bruce 041029; totally revised by bruce 050702 """ (Public method) Report whether an atom has been killed. """ # Note: some "friend code" inlines this method for speed # (and omits the debug code). To find it, search for _Atom__killed # (the mangled version of __killed). [bruce 071018 comment] if debug_flags.atom_debug: # this cond is for speed mol = self.molecule from chunk import _nullMol better_alive_answer = mol is not None and self.key in mol.atoms and mol is not _nullMol ##e and mol is not killed??? if (not not better_alive_answer) != (not self.__killed): if debug_flags.atom_debug: #bruce 060414 re bug 1779, but it never printed for it (worth keeping in for other bugs) #bruce 071018 fixed typo of () after debug_flags.atom_debug -- could that be why it never printed it?!? print "debug: better_alive_answer is %r but (not self.__killed) is %r" % (better_alive_answer , not self.__killed) return self.__killed | ed409134e77b5e0b4516d0060e8f298611249859 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/11221/ed409134e77b5e0b4516d0060e8f298611249859/chem.py | [
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if (updater_stat == "T" or updater_stat == "X" or updater_stat == "T"): | if (updater_stat == "T" or updater_stat == "X" or updater_stat == "Z"): | def nmclient_rawsay(nmip, nmport, *args): fullresponse = nmclient_rawcommunicate(nmip, nmport, *args) try: (response, status) = fullresponse.rsplit('\n',1) except KeyError: raise NMClientException, "Communication error '"+fullresponse+"'" if status == 'Success': return response elif status == 'Error': raise NMClientException, "Node Manager error '"+response+"'" elif status == 'Warning': raise NMClientException, "Node Manager warning '"+response+"'" else: raise NMClientException, "Unknown status '"+fullresponse+"'" | 1492264581c4f4eef2330103bb89d205a710a2ed /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/7263/1492264581c4f4eef2330103bb89d205a710a2ed/testprocess.py | [
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lon, lat = float(site.lon), float(site.lat) | try: lon, lat = float(site.lon), float(site.lat) except TypeError: raise GeocodeError | def __init__(self, data=None, site=None, *args, **kwargs): lon, lat = float(site.lon), float(site.lat) super(OrderSettingsForm, self).__init__(data, *args, **kwargs) self.fields['delivery_area'].widget = EditableMap(options={ 'geometry': 'polygon', 'isCollection': True, 'layers': ['google.streets'], 'default_lat': lat, 'default_lon': lon, 'defaultZoom': 13, 'map_options': { 'controls': ['Navigation', 'PanZoom'] } }) self.fields['email'].initial = site.email self.fields['fax'].initial = site.fax_number self.site = site | d5f358dec9268b887716daf4572652e4007f5baf /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9903/d5f358dec9268b887716daf4572652e4007f5baf/forms.py | [
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self.rules[path]['event_producer_thread'].stop() | o = self.rules.pop(path) o['event_producer_thread'].stop() | def remove_rule(self, path): if path in self.rules: self.rules[path]['event_producer_thread'].stop() | 19f48676341f4f13ee6fd272f4be1c3471a41d87 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/14346/19f48676341f4f13ee6fd272f4be1c3471a41d87/PollingWatcher.py | [
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matt[n].specular_hardness=materials[idx_mat][3][4] | if raise_small_hardness and (materials[idx_mat][3][4]<default_hardeness): matt[n].specular_hardness=default_hardeness else: matt[n].specular_hardness=materials[idx_mat][3][4] | def create_materials(groups,materials,textures,orbiterpath): #counting material/texture combinations print("Creating materials") matpairset=set() matpair=[] # [(mat,tex),[mgroups...]] Unique mat+tex and corresponding groups for n in range(len(groups)): l=(groups[n][1],groups[n][2]) #print(l) if l not in matpairset: matpairset.add(l) matpair.append([l,[]]) #fill unique mat+tex combination for n in range(len(groups)): l=(groups[n][1],groups[n][2]) for i in range(len(matpair)): if l==matpair[i][0]: matpair[i][1].append(n) #fill array of corresponding groups print("\nUnique pairs:\n",matpairset) print(matpair) #create textures #TODO: upper/lower case handling in Linux tx=[] tex_load_fails=0 orbiter_path_ok=os.access(orbiterpath,os.F_OK) if not(orbiter_path_ok): print("Orbiter path is wrong! path=",orbiterpath) print("creating textures") for n in range(len(textures)): tx.append(bpy.data.textures.new(textures[n][1],"IMAGE")) if orbiter_path_ok: v=ntpath.split(textures[n][0]) print(v); fpath=os.path.join(orbiterpath,"Textures") for i in v: fpath=os.path.join(fpath,i) print (fpath) #Trying to load data try: img=bpy.data.images.load(fpath) except: print("!!!!!Can not load image: ",fpath) tex_load_fails=tex_load_fails+1 continue else: tex_load_fails=tex_load_fails+1 continue tx[n].image=img tx[n].use_alpha=True print("creating materials") n=0 matt=[] for pair in matpair: #create material object idx_mat=pair[0][0]-1 idx_tex=pair[0][1]-1 print("idx_mat=",idx_mat) print("mat_name=",materials[idx_mat][0]) print("diff=",materials[idx_mat][1][:3]) print("tex=",textures[idx_tex][1],"idx=",idx_tex) matt.append(bpy.data.materials.new(materials[idx_mat][0])) #diffuse component matt[n].diffuse_color=materials[idx_mat][1][:3] matt[n].alpha=materials[idx_mat][1][3] if materials[idx_mat][1][3]<1.0: matt[n].use_transparency=True #specular component matt[n].specular_color=materials[idx_mat][3][:3] matt[n].specular_alpha=materials[idx_mat][3][3] if len(materials[idx_mat][3])==5: matt[n].specular_hardness=materials[idx_mat][3][4] #there aren''t different ambient and emissive color component in blender #ambient is very often equal to diffuse, it's like amb=1.0 in blender #Emmissive component: import_emmissive=True; if import_emmissive: emm_c=materials[idx_mat][4][:3] matt[n].emit=(emm_c[0]+emm_c[1]+emm_c[2])/3 #Adding texture to material if idx_tex>=0: mtex=matt[n].texture_slots.add() mtex.texture=tx[idx_tex] mtex.texture_coords="UV" #mtex.map_colordiff = True #mtex.map_alpha = True #mtex.map_coloremission = True #mtex.map_density = True #mtex.mapping = 'FLAT' for grp_idx in pair[1]: groups[grp_idx][5].data.materials.append(matt[n]) n=n+1 print("=============Materials creation summary:=================") print("Created ",n," materials,") print("Loaded ",len(tx)-tex_load_fails," textures.") if not(orbiter_path_ok): print("WARNING! Orbiter path is wrong or not accessible, textures cannot be loaded!") print("Wrong path=",orbiterpath) if tex_load_fails>0: print("WARNING! ",tex_load_fails," of ",len(tx)," textures aren't loaded, possibly wrong file name(s)!") | 86e35fd95f0c62cd139674c6ebaa7ac78d3174ba /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/10993/86e35fd95f0c62cd139674c6ebaa7ac78d3174ba/io_import_msh.py | [
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alphabet = _consensus_alphabet([rec.seq.alphabet for rec in sequences \ | alphabet = _consensus_alphabet([rec.seq.alphabet \ for rec in sequences \ | def to_alignment(sequences, alphabet=None, strict=True): """Returns a multiple sequence alignment (OBSOLETE). - sequences -An iterator that returns SeqRecord objects, or simply a list of SeqRecord objects. All the record sequences must be the same length. - alphabet - Optional alphabet. Stongly recommended. - strict - Optional, defaults to True. Should error checking be done? Using this function is now discouraged. Rather doing this: >>> from Bio import SeqIO >>> handle = open("Clustalw/protein.aln") >>> alignment = SeqIO.to_alignment(SeqIO.parse(handle, "clustal")) >>> handle.close() You are now encouraged to use Bio.AlignIO instead, e.g. >>> from Bio import AlignIO >>> handle = open("Clustalw/protein.aln") >>> alignment = AlignIO.read(handle, "clustal") >>> handle.close() """ #TODO - Move this functionality into the Alignment class instead? from Bio.Alphabet import generic_alphabet from Bio.Alphabet import _consensus_alphabet if alphabet is None: sequences = list(sequences) alphabet = _consensus_alphabet([rec.seq.alphabet for rec in sequences \ if rec.seq is not None]) if not (isinstance(alphabet, Alphabet) or isinstance(alphabet, AlphabetEncoder)): raise ValueError("Invalid alphabet") alignment_length = None alignment = Alignment(alphabet) for record in sequences: if strict: if alignment_length is None: alignment_length = len(record.seq) elif alignment_length != len(record.seq): raise ValueError("Sequences must all be the same length") assert isinstance(record.seq.alphabet, Alphabet) \ or isinstance(record.seq.alphabet, AlphabetEncoder), \ "Sequence does not have a valid alphabet" #TODO - Move this alphabet comparison code into the Alphabet module/class? #TODO - Is a normal alphabet "ungapped" by default, or does it just mean #undecided? if isinstance(record.seq.alphabet, Alphabet) \ and isinstance(alphabet, Alphabet): #Comparing two non-gapped alphabets if not isinstance(record.seq.alphabet, alphabet.__class__): raise ValueError("Incompatible sequence alphabet " \ + "%s for %s alignment" \ % (record.seq.alphabet, alphabet)) elif isinstance(record.seq.alphabet, AlphabetEncoder) \ and isinstance(alphabet, Alphabet): raise ValueError("Sequence has a gapped alphabet, alignment does not") elif isinstance(record.seq.alphabet, Alphabet) \ and isinstance(alphabet, Gapped): #Sequence isn't gapped, alignment is. if not isinstance(record.seq.alphabet, alphabet.alphabet.__class__): raise ValueError("Incompatible sequence alphabet " \ + "%s for %s alignment" \ % (record.seq.alphabet, alphabet)) else: #Comparing two gapped alphabets if not isinstance(record.seq.alphabet, alphabet.__class__): raise ValueError("Incompatible sequence alphabet " \ + "%s for %s alignment" \ % (record.seq.alphabet, alphabet)) if record.seq.alphabet.gap_char != alphabet.gap_char: raise ValueError("Sequence gap characters != alignment gap char") #ToDo, additional checks on the specified alignment... #Should we look at the alphabet.contains() method? if record.seq is None: raise TypeError("SeqRecord (id=%s) has None for its sequence." % record.id) #This is abusing the "private" records list, #we should really have a method like add_sequence #but which takes SeqRecord objects. See also Bug 1944 alignment._records.append(record) return alignment | a2855b4f95e94e4ef816422674d48a89ec6bbe18 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/7167/a2855b4f95e94e4ef816422674d48a89ec6bbe18/__init__.py | [
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self.dbh.execute("update msn_users set session_id=%r where session_id=-1",m.session_id) | try: self.dbh.execute("update msn_users set session_id=%r where session_id=-1",m.session_id) except Exception: pass self.dbh.execute("delete from msn_users where session_id=-1") | def process_stream(self, stream, factories): ports = dissect.fix_ports("MSN") if stream.src_port in ports or stream.dest_port in ports: #Keep track of the streams we have combined so we don't process reverse again #self.processed is a ring buffer so it doesn't get too big if not self.processed.has_key(stream.con_id): #Haven't processed this one. #This returns the forward and reverse stream associated with the MSN port (uses port numbers in .pyflagrc). forward_stream, reverse_stream = self.stream_to_server(stream, "MSN") #We need both streams otherwise this won't work if not reverse_stream or not forward_stream: return | cf7fac3ff0c735f3f514d4f41c9e494e2787883c /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/5568/cf7fac3ff0c735f3f514d4f41c9e494e2787883c/MSN.py | [
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include "meta.rnc" | def buildSchemaDrivers(): schemaDir = os.path.join(buildRoot, "syntax", "relaxng") legacyRnc = os.path.join(os.path.join(buildRoot, "validator", "schema", "legacy", "legacy.rnc")) buildSchemaDriverHtmlCore(schemaDir) buildSchemaDriverHtml5(schemaDir) buildSchemaDriverHtml5Aria(schemaDir) buildSchemaDriverHtml5AriaRdfa(schemaDir) buildSchemaDriverXhtmlCore(schemaDir) buildSchemaDriverXhtmlCorePlusWf2(schemaDir) buildSchemaDriverXhtml5html(schemaDir) buildSchemaDriverXhtml5xhtml(schemaDir) buildSchemaDriverXhtml5Aria(schemaDir) buildSchemaDriverXhtml5AriaRdfa(schemaDir) removeIfExists(os.path.join(schemaDir, "legacy.rnc")) shutil.copy(legacyRnc, schemaDir) | 79071eb95d29311580797e9db095992d6fc2d2ee /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/13711/79071eb95d29311580797e9db095992d6fc2d2ee/build.py | [
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design_size = m.group (1) prefixes = [("cmtt", "Computer Modern Typewriter Text"), ("cmvtt", "Computer Modern Variable Width Typewriter Text"), ("cmss", "Computer Modern Sans Serif"), ("cm", "Computer Modern")] | design_size = string.atoi (m.group (1)) fontinfo['DesignSize'] = design_size prefixes = [("cmtt", "CMTypewriter"), ("cmvtt", "CMVariableWidthTypewriter"), ("cmss", "CMSans"), ("cm", "CM")] | def cm_guess_font_info (filename): """this function fills in sensible values for fontinfo. | dfdd47ac4957b0e437c434b79c7589ca35658d7b /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/11856/dfdd47ac4957b0e437c434b79c7589ca35658d7b/mftrace.py | [
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<dt>Enable for:</dt> <dd>To make the rank method visible in the search interface for a collection, choose the wanted collection and press the "Enable" button.</dd> <dt>Disable for:</dt> <dd>To hide the rank method from the search interface for a collection, choose the wanted collection and press the "Disable" button.</dd> <dt>'%s' is currently enabled for the following collections:</dt> | <dt>The rank method is currently enabled for these collections:</dt> | def perform_modifycollection(rnkID='', ln=cdslang, func='', colID='', confirm=0): """Modify which collections the rank method is visible to""" output = "" subtitle = "" if rnkID: rnkNAME = get_current_name(rnkID, ln, get_rnk_nametypes()[0][0], "rnkMETHOD")[0][1] if func in ["0", 0] and confirm in ["1", 1]: finresult = attach_col_rnk(rnkID, colID) elif func in ["1", 1] and confirm in ["1", 1]: finresult = detach_col_rnk(rnkID, colID) if colID: colNAME = get_current_name(colID, ln, get_col_nametypes()[0][0], "collection")[0][1] subtitle = """Step 1 - Select collection to enable/disable rank method '%s' for""" % rnkNAME output = """ <dl> <dt>Enable for:</dt> <dd>To make the rank method visible in the search interface for a collection, choose the wanted collection and press the "Enable" button.</dd> <dt>Disable for:</dt> <dd>To hide the rank method from the search interface for a collection, choose the wanted collection and press the "Disable" button.</dd> <dt>'%s' is currently enabled for the following collections:</dt> <dd> """ % rnkNAME col_list = get_rnk_col(rnkID, ln) if not col_list: output += """No collections""" else: for (id, name) in col_list: output += """%s, """ % name output += """</dd> </dl> """ col_list = get_current_name('', ln, get_col_nametypes()[0][0], "collection") col_rnk = dict(get_rnk_col(rnkID)) col_list = filter(lambda x: not col_rnk.has_key(x[0]), col_list) if col_list: text = """ <span class="adminlabel">Enable for:</span> <select name="colID" class="admin_w200"> <option value="">- select collection -</option> """ for (id, name) in col_list: text += """<option value="%s" %s>%s</option>""" % (id, (func in ["0", 0] and confirm in ["0", 0] and colID and int(colID) == int(id)) and 'selected="selected"' or '' , name) text += """</select>""" output += createhiddenform(action="modifycollection", text=text, button="Enable", rnkID=rnkID, ln=ln, func=0, confirm=0) if confirm in ["0", 0] and func in ["0", 0] and colID: subtitle = "Step 2 - Confirm to enable rank method for the chosen collection" text = "<b><p>Please confirm to enable rank method '%s' for the collection '%s'</p></b>" % (rnkNAME, colNAME) output += createhiddenform(action="modifycollection", text=text, button="Confirm", rnkID=rnkID, ln=ln, colID=colID, func=0, confirm=1) elif confirm in ["1", 1] and func in ["0", 0] and colID: subtitle = "Step 3 - Result" if finresult: output += """<b><span class="info">Rank method '%s' enabled for collection '%s'</span></b>""" % (rnkNAME, colNAME) else: output += """<b><span class="info">Rank method '%s' could not be enabled for collection '%s'</span></b>""" % (rnkNAME[0], colNAME) col_list = get_rnk_col(rnkID, ln) if col_list: text = """ <span class="adminlabel">Disable for:</span> <select name="colID" class="admin_w200"> <option value="">- select collection -</option> """ for (id, name) in col_list: text += """<option value="%s" %s>%s</option>""" % (id, (func in ["1", 1] and confirm in ["0", 0] and colID and int(colID) == int(id)) and 'selected="selected"' or '' , name) text += """</select>""" output += createhiddenform(action="modifycollection", text=text, button="Disable", rnkID=rnkID, ln=ln, func=1, confirm=0) if confirm in ["0", 0] and func in ["1", 1] and colID: subtitle = "Step 2 - Confirm to disable rank method for collection" text = "<b><p>Please confirm to disable rank method '%s' for collection '%s'</p></b>" % (rnkNAME, colNAME) output += createhiddenform(action="modifycollection", text=text, button="Confirm", rnkID=rnkID, ln=ln, colID=colID, func=1, confirm=1) elif confirm in ["1", 1] and func in ["1", 1] and colID: subtitle = "Step 3 - Result" if finresult: output += """<b><span class="info">Rank method '%s' disabled for collection '%s'</span></b>""" % (rnkNAME, colNAME) else: output += """<b><span class="info">Rank method '%s' could not be disabled for collection '%s'</span></b>""" % (rnkNAME, colNAME) try: body = [output, extra] except NameError: body = [output] return addadminbox(subtitle + """   <small>[<a href="%s/admin/bibrank/guide.html#mc">?</a>]</small>""" % weburl, body) | a6a2a3f836d914026219bf3610ec841b23ae03ce /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12027/a6a2a3f836d914026219bf3610ec841b23ae03ce/bibrankadminlib.py | [
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for f,r in self.replace_paths: | for f, r in self.replace_paths: | def replace_paths_in_code(self, co): new_filename = original_filename = os.path.normpath(co.co_filename) for f,r in self.replace_paths: if original_filename.startswith(f): new_filename = r+original_filename[len(f):] break | e29310a2b3e50958b00c0e92b142992599cf7ef1 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8546/e29310a2b3e50958b00c0e92b142992599cf7ef1/modulefinder.py | [
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frameCustom.pack(side=LEFT,padx=5,pady=10,expand=TRUE,fill=BOTH) frameTheme.pack(side=LEFT,padx=5,pady=10,fill=Y) | frameCustom.pack(side=LEFT,padx=5,pady=5,expand=TRUE,fill=BOTH) frameTheme.pack(side=LEFT,padx=5,pady=5,fill=Y) | def CreatePageHighlight(self): self.builtinTheme=StringVar(self) self.customTheme=StringVar(self) self.fgHilite=BooleanVar(self) self.colour=StringVar(self) self.fontName=StringVar(self) self.themeIsBuiltin=BooleanVar(self) self.highlightTarget=StringVar(self) ##widget creation #body frame frame=self.tabPages.pages['Highlighting']['page'] #body section frames frameCustom=Frame(frame,borderwidth=2,relief=GROOVE) frameTheme=Frame(frame,borderwidth=2,relief=GROOVE) #frameCustom self.textHighlightSample=Text(frameCustom,relief=SOLID,borderwidth=1, font=('courier',12,''),cursor='hand2',width=21,height=10, takefocus=FALSE,highlightthickness=0,wrap=NONE) text=self.textHighlightSample text.bind('<Double-Button-1>',lambda e: 'break') text.bind('<B1-Motion>',lambda e: 'break') textAndTags=(('#you can click here','comment'),('\n','normal'), ('#to choose items','comment'),('\n','normal'),('def','keyword'), (' ','normal'),('func','definition'),('(param):','normal'), ('\n ','normal'),('"""string"""','string'),('\n var0 = ','normal'), ("'string'",'string'),('\n var1 = ','normal'),("'selected'",'hilite'), ('\n var2 = ','normal'),("'found'",'hit'), ('\n var3 = ','normal'),('list', 'builtin'), ('(','normal'), ('None', 'builtin'),(')\n\n','normal'), (' error ','error'),(' ','normal'),('cursor |','cursor'), ('\n ','normal'),('shell','console'),(' ','normal'),('stdout','stdout'), (' ','normal'),('stderr','stderr'),('\n','normal')) for txTa in textAndTags: text.insert(END,txTa[0],txTa[1]) for element in self.themeElements.keys(): text.tag_bind(self.themeElements[element][0],'<ButtonPress-1>', lambda event,elem=element: event.widget.winfo_toplevel() .highlightTarget.set(elem)) text.config(state=DISABLED) self.frameColourSet=Frame(frameCustom,relief=SOLID,borderwidth=1) frameFgBg=Frame(frameCustom) labelCustomTitle=Label(frameCustom,text='Set Custom Highlighting') buttonSetColour=Button(self.frameColourSet,text='Choose Colour for :', command=self.GetColour,highlightthickness=0) self.optMenuHighlightTarget=DynOptionMenu(self.frameColourSet, self.highlightTarget,None,highlightthickness=0)#,command=self.SetHighlightTargetBinding self.radioFg=Radiobutton(frameFgBg,variable=self.fgHilite, value=1,text='Foreground',command=self.SetColourSampleBinding) self.radioBg=Radiobutton(frameFgBg,variable=self.fgHilite, value=0,text='Background',command=self.SetColourSampleBinding) self.fgHilite.set(1) buttonSaveCustomTheme=Button(frameCustom, text='Save as New Custom Theme',command=self.SaveAsNewTheme) #frameTheme labelThemeTitle=Label(frameTheme,text='Select a Highlighting Theme') labelTypeTitle=Label(frameTheme,text='Select : ') self.radioThemeBuiltin=Radiobutton(frameTheme,variable=self.themeIsBuiltin, value=1,command=self.SetThemeType,text='a Built-in Theme') self.radioThemeCustom=Radiobutton(frameTheme,variable=self.themeIsBuiltin, value=0,command=self.SetThemeType,text='a Custom Theme') self.optMenuThemeBuiltin=DynOptionMenu(frameTheme, self.builtinTheme,None,command=None) self.optMenuThemeCustom=DynOptionMenu(frameTheme, self.customTheme,None,command=None) self.buttonDeleteCustomTheme=Button(frameTheme,text='Delete Custom Theme', command=self.DeleteCustomTheme) ##widget packing #body frameCustom.pack(side=LEFT,padx=5,pady=10,expand=TRUE,fill=BOTH) frameTheme.pack(side=LEFT,padx=5,pady=10,fill=Y) #frameCustom labelCustomTitle.pack(side=TOP,anchor=W,padx=5,pady=5) self.frameColourSet.pack(side=TOP,padx=5,pady=5,expand=TRUE,fill=X) frameFgBg.pack(side=TOP,padx=5,pady=0) self.textHighlightSample.pack(side=TOP,padx=5,pady=5,expand=TRUE, fill=BOTH) buttonSetColour.pack(side=TOP,expand=TRUE,fill=X,padx=8,pady=4) self.optMenuHighlightTarget.pack(side=TOP,expand=TRUE,fill=X,padx=8,pady=3) self.radioFg.pack(side=LEFT,anchor=E) self.radioBg.pack(side=RIGHT,anchor=W) buttonSaveCustomTheme.pack(side=BOTTOM,fill=X,padx=5,pady=5) #frameTheme labelThemeTitle.pack(side=TOP,anchor=W,padx=5,pady=5) labelTypeTitle.pack(side=TOP,anchor=W,padx=5,pady=5) self.radioThemeBuiltin.pack(side=TOP,anchor=W,padx=5) self.radioThemeCustom.pack(side=TOP,anchor=W,padx=5,pady=2) self.optMenuThemeBuiltin.pack(side=TOP,fill=X,padx=5,pady=5) self.optMenuThemeCustom.pack(side=TOP,fill=X,anchor=W,padx=5,pady=5) self.buttonDeleteCustomTheme.pack(side=TOP,fill=X,padx=5,pady=5) return frame | cb3fac2e967e9ef77ede3f9945cfed8702f7e0a5 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/3187/cb3fac2e967e9ef77ede3f9945cfed8702f7e0a5/configDialog.py | [
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self._completeDelayedCallback = FrameDelayedCallback( | self._completeDelayedCallback = FrameDelayedCall( | def sendEvent(): messenger.send(self.getAllInterestsCompleteEvent()) for callback in self._allInterestsCompleteCallbacks: callback() self._allInterestsCompleteCallbacks = [] | 0ad3bac423d39b998827d489a97d947c4e85743a /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/8543/0ad3bac423d39b998827d489a97d947c4e85743a/DoInterestManager.py | [
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BonjourFile(file, 'resolution').close() | BonjourFile(file, 'resolution').close() | def _resolve_cb(self, file, flags, interface_index, error_code, fullname, host_target, port, txtrecord): notification_center = NotificationCenter() settings = SIPSimpleSettings() if error_code == bonjour.kDNSServiceErr_NoError: txt = bonjour.TXTRecord.parse(txtrecord) contact = txt['contact'].strip('<>') if 'contact' in txt else None if contact: display_name = txt['name'].decode('utf-8') if 'name' in txt else None host = re.match(r'^(.*?)(\.local)?\.?$', host_target).group(1) uri = FrozenSIPURI.parse(contact) transport = uri.parameters.get('transport', 'udp') supported_transport = transport in settings.sip.transport_list and (transport!='tls' or self.account.tls.certificate is not None) if supported_transport and uri != self.account.contact[transport] and uri not in self._neighbours: self._neighbours.add(uri) notification_center.post_notification('BonjourAccountDidAddNeighbour', sender=self.account, data=TimestampedNotificationData(display_name=display_name, host=host, uri=uri)) BonjourFile(file, 'resolution').close() | e155e163c29dab32cacafb785a44e3adb5d577b4 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3449/e155e163c29dab32cacafb785a44e3adb5d577b4/account.py | [
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self.assertEquals(map(lambda x:x.text, fragList), [u'Hello ',u'\xc2\xa9',u' copyright']) | self.assertEquals(map(lambda x:x.text, fragList), [u'Hello ',u'\xa9',u' copyright']) | def testEntityUnicode(self): "Numeric entities should be unescaped by parser" txt = u"Hello © copyright" fragList = ParaParser().parse(txt, self.style)[1] self.assertEquals(map(lambda x:x.text, fragList), [u'Hello ',u'\xc2\xa9',u' copyright']) | 55d7869f3b6dcd4bb6bef80704fcd9716369ea6b /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3878/55d7869f3b6dcd4bb6bef80704fcd9716369ea6b/test_platypus_paraparser.py | [
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browsed_words = browse_in_bibxxx(p, f, rg) while not browsed_words: | browsed_phrases = get_nearest_terms_in_bibxxx(p, f, rg, 1) while not browsed_phrases: | def browse_pattern(req, colls, p, f, rg): """Browse either biliographic phrases or words indexes, and display it.""" ## do we search in words indexes? if not f: return browse_in_bibwords(req, p, f) ## prepare collection urlargument for later printing: p_orig = p urlarg_colls = "" for coll in colls: urlarg_colls += "&c=%s" % urllib.quote(coll) ## okay, "real browse" follows: browsed_words = browse_in_bibxxx(p, f, rg) while not browsed_words: # try again and again with shorter and shorter pattern: try: p = p[:-1] browsed_words = browse_in_bibxxx(p, f, rg) except: # probably there are no hits at all: req.write("<p>No values found.") return ## try to check hits in these particular collection selection: browsed_words_in_colls = [] for word,nbhits in browsed_words: word_hitlist = HitList() word_hitlists = search_pattern("", word, f, colls, 'e') for coll in colls: word_hitlist.union(word_hitlists[coll]) word_hitlist.calculate_nbhits() if word_hitlist._nbhits > 0: # okay, this word has some hits in colls, so add it: browsed_words_in_colls.append([word, word_hitlist._nbhits]) ## were there hits in collections? if browsed_words_in_colls == []: if browsed_words != []: print_warning(req, """<p>No match close to <em>%s</em> found in given collections. Please try different term.<p>Displaying matches in any collection...""" % p_orig, "") browsed_words_in_colls = browsed_words ## display results now: out = """<table class="searchresultsbox"> <thead> <tr> <th class="searchresultsboxheader" align="left"> hits </th> <th class="searchresultsboxheader" width="15"> </th> <th class="searchresultsboxheader" align="left"> %s </th> </tr> </thead> <tbody>""" % f if len(browsed_words_in_colls) == 1: # one hit only found: word, nbhits = browsed_words_in_colls[0][0], browsed_words_in_colls[0][1] out += """<tr> <td class="searchresultsboxbody" align="right"> %s </td> <td class="searchresultsboxbody" width="15"> </td> <td class="searchresultsboxbody" align="left"> <a href="%s/search.py?p=%%22%s%%22&f=%s%s">%s</a> </td> </tr>""" % (nbhits, weburl, urllib.quote(word), urllib.quote(f), urlarg_colls, word) elif len(browsed_words_in_colls) > 1: # first display what was found but the last one: for word, nbhits in browsed_words_in_colls[:-1]: out += """<tr> <td class="searchresultsboxbody" align="right"> %s </td> <td class="searchresultsboxbody" width="15"> </td> <td class="searchresultsboxbody" align="left"> <a href="%s/search.py?p=%%22%s%%22&f=%s%s">%s</a> </td> </tr>""" % (nbhits, weburl, urllib.quote(word), urllib.quote(f), urlarg_colls, word) # now display last hit as "next term": word, nbhits = browsed_words_in_colls[-1] out += """<tr><td colspan="2" class="normal"> </td> <td class="normal"> <img src="%s/img/sn.gif" alt="" border="0"> next %s: <a href="%s/search.py?search=Browse&p=%s&f=%s%s">%s</a> </td> </tr>""" % (weburl, f, weburl, urllib.quote(word), urllib.quote(f), urlarg_colls, word) out += """</tbody> </table>""" req.write(out) return | 535ed6a8d836745c0ddd7f1016fbe145d7c7bebd /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2139/535ed6a8d836745c0ddd7f1016fbe145d7c7bebd/search_engine.py | [
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t = self.font_switcher.fontifyText(xmlescape(''.join(txt).strip()).encode('utf-8')) | t = self.font_switcher.fontifyText(xmlescape(''.join(txt).strip())).encode('utf-8') | def writeLink(self,obj): """ Link nodes are intra wiki links """ | 5b13d94f47a43c6f34f2d8bd5ccb703e70557fd2 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/12390/5b13d94f47a43c6f34f2d8bd5ccb703e70557fd2/rlwriter.py | [
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if s3path == self._prefix: | if s3path == "/" or s3path == self._prefix: | def isdir(self,path): """Check whether a path exists and is a directory.""" s3path = self._s3path(path) + self._separator # Root is always a directory if s3path == self._prefix: return True # Use a list request so that we return true if there are any files # in that directory. This avoids requiring a special file for the # the directory itself, which other tools may not create. ks = self._s3bukt.list(prefix=s3path,delimiter=self._separator) for k in ks: return True return False | a97fab46dd4f11ad2fd10368707968cd764a18d9 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/5579/a97fab46dd4f11ad2fd10368707968cd764a18d9/s3fs.py | [
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key = string.upper(key) self.data[key] = item | self.data[key.upper()] = item | def __setitem__(self, key, item): putenv(key, item) key = string.upper(key) self.data[key] = item | 1e3c380cd4e6e569be13bdaa54da1f9acbd3c0d0 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8125/1e3c380cd4e6e569be13bdaa54da1f9acbd3c0d0/os.py | [
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debug('cleaning up worker %d' % w.pid) | debug('cleaning up worker %s' % w.pid) | def _terminate_pool(cls, taskqueue, inqueue, outqueue, pool, worker_handler, task_handler, result_handler, cache): # this is guaranteed to only be called once debug('finalizing pool') | 89db55254387b4cae708c5477e87a6a3b76344aa /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8125/89db55254387b4cae708c5477e87a6a3b76344aa/pool.py | [
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ttf = _py_getFont(ttfn) t1f = _py_getFont(t1fn) | ttf = getFont(ttfn) t1f = getFont(t1fn) | def test_instanceStringWidth(self): from reportlab.pdfbase.pdfmetrics import registerFont, _py_getFont from reportlab.pdfbase.ttfonts import TTFont ttfn = 'Luxi-Serif' t1fn = 'Times-Roman' registerFont(TTFont(ttfn, "luxiserif.ttf")) ttf = _py_getFont(ttfn) t1f = _py_getFont(t1fn) testCp1252 = 'copyright %s trademark %s registered %s ReportLab! Ol%s!' % (chr(169), chr(153),chr(174), chr(0xe9)) enc='cp1252' senc = 'utf8' ts = 'ABCDEF\xce\x91\xce\xb2G' utext = 'ABCDEF\xce\x91\xce\xb2G'.decode(senc) fontSize = 12. def tfunc(f,ts,fontSize,enc): w1 = f.stringWidth(ts,fontSize,enc) w2 = f._py_stringWidth(ts,fontSize,enc) assert abs(w1-w2)<1e-10,"f(%r).stringWidthU(%r,%s,%r)-->%r != f._py_stringWidth(...)-->%r" % (f,ts,fontSize,enc,w1,w2) tfunc(t1f,testCp1252,fontSize,enc) tfunc(t1f,ts,fontSize,senc) tfunc(t1f,utext,fontSize,senc) tfunc(ttf,ts,fontSize,senc) tfunc(ttf,testCp1252,fontSize,enc) tfunc(ttf,utext,fontSize,senc) | 12e8e9cc55671e5cc6f4a8cba83406f53d6c3513 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3878/12e8e9cc55671e5cc6f4a8cba83406f53d6c3513/test_rl_accel.py | [
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noshell = 0 | noshell = 0 | def main(self, argv, noshell): cmd = None edit = 0 debug = 0 startup = 0 try: opts, args = getopt.getopt(argv, "c:deist:") except getopt.error, msg: sys.stderr.write("Error: %s\n" % str(msg)) sys.stderr.write(usage_msg) sys.exit(2) for o, a in opts: noshell = 0 if o == '-c': cmd = a if o == '-d': debug = 1 if o == '-e': edit = 1 if o == '-s': startup = 1 if o == '-t': PyShell.shell_title = a if noshell: edit=1 for i in range(len(sys.path)): sys.path[i] = os.path.abspath(sys.path[i]) pathx = [] if edit: for filename in args: pathx.append(os.path.dirname(filename)) elif args and args[0] != "-": pathx.append(os.path.dirname(args[0])) else: pathx.append(os.curdir) for dir in pathx: dir = os.path.abspath(dir) if not dir in sys.path: sys.path.insert(0, dir) | e1ea5a6a5cba72909c5bd271708c70ad1391d343 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8125/e1ea5a6a5cba72909c5bd271708c70ad1391d343/PyShell.py | [
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if len(geometries) > 0: | if len(geometries) > 1: | def __call__(self, f): xyz_reader = XYZReader(f) molecule = xyz_reader.get_first_molecule() | f5e1005bc70646586504f98cb0f3c655ceed081b /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/11052/f5e1005bc70646586504f98cb0f3c655ceed081b/xyz.py | [
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if subDirsRemoved and filesRemoved: | if subDirsRemoved and allFilesRemoved: | def __removeDir(self,directory): """ Black magic to recursively remove the directory and sub dirs. Repeatedly calls itself to delete recursively. """ filesRemoved = 0 sizeRemoved = 0 res = self.listDirectory(directory) if not res['OK']: return S_ERROR("Failed to list directory") if not res['Value']['Successful'].has_key(directory): return S_ERROR("Failed to list directory") filesRemoved = False surlsDict = res['Value']['Successful'][directoryPath]['Files'] subDirsDict = res['Value']['Successful'][directoryPath]['SubDirs'] res = storage.removeFile(surlsDict.keys()) if res['OK']: for removedSurl in res['Value']['Successful'].keys(): filesRemoved += 1 sizeRemoved += files[removedSurl]['Size'] if len(res['Value']['Failed'].keys()) == 0: filesRemoved = True # Remove the sub directories found subDirsRemoved = True for subDir in subDirsDict.keys(): res = self.__removeDir(subDir) if not res['OK']: subDirsRemoved = False if not res['Value']['AllRemoved']: subDirsRemoved = False filesRemoved += res['Value']['Files'] sizeRemoved += res['Value']['Size'] if subDirsRemoved and filesRemoved: allRemoved = True else: allRemoved = False resDict = {'AllRemoved':allRemoved,'Files':filesRemoved,'Size':sizeRemoved} return S_OK(resDict) | 0c142939ddc410eebdc2cef5627d4332317e31b1 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/12864/0c142939ddc410eebdc2cef5627d4332317e31b1/SRM2Storage.py | [
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for i, row in enumerate(self.model): | rows = self.get_all_file_rows() for i, row in enumerate(rows): | def get_next_bean_by_UUID(self, repeat_all=False): UUID = self.active_UUID for i, row in enumerate(self.model): if row[self.is_file[0]] and row[self.UUID[0]] == UUID: if i + 1 < len(self.model): next_row = self.model[i + 1] if next_row[self.is_file[0]]: return self.get_bean_from_row(next_row) if repeat_all: for row in self.model: if not row[self.is_file[0]]: continue return self.get_bean_from_row(row) else: return None | a9e8da818dbcefbfc3c0172d631c37b3e9ee048a /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/14563/a9e8da818dbcefbfc3c0172d631c37b3e9ee048a/common_tree.py | [
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action = True featured = wikipedia.translate(mysite, featured_articles) ref = wikipedia.Page(wikipedia.getSite(), featured) gen = pagegenerators.ReferringPageGenerator(ref) generator = pagegenerators.NamespaceFilterPageGenerator(gen, [0]) for page in generator: workon(page) | featured = True | def workon(page): try: text = page.get() except wikipedia.IsRedirectPage: return wikipedia.output(u"\n\n>>> \03{lightpurple}%s\03{default} <<<" % page.title()) links = page.linkedPages() wikipedia.getall(mysite,links) for page2 in links: try: target = page2.getRedirectTarget() except (wikipedia.Error,wikipedia.SectionError): continue text = treat(text, page2, target) if text != page.get(): comment = wikipedia.translate(mysite, msg) page.put(text, comment) | 89a93e7c410791c4b730c6fda9f2d91608b2c69d /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/4404/89a93e7c410791c4b730c6fda9f2d91608b2c69d/fixing_redirects.py | [
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return Hammie(storage.open_storage((filename, mode), useDB) | return Hammie(storage.open_storage((filename, mode), useDB)) | def open(filename, useDB=True, mode='r'): """Open a file, returning a Hammie instance. If usedb is False, open as a pickle instead of a DBDict. mode is used as the flag to open DBDict objects. 'c' for read-write (create if needed), 'r' for read-only, 'w' for read-write. """ return Hammie(storage.open_storage((filename, mode), useDB) | b1bba2e09369c91c9ae0bfe08540efc9c68536be /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9857/b1bba2e09369c91c9ae0bfe08540efc9c68536be/hammie.py | [
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def update_idx(): exe.add((cfg.bin.git, 'update-index', '--refresh')) | def update_idx(): exe.add((cfg.bin.git, 'update-index', '--refresh'), block=True) | def update_idx(): exe.add((cfg.bin.git, 'update-index', '--refresh')) | 1eb490ecf022d10b9baff3f98342b64ecf7ff733 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/11594/1eb490ecf022d10b9baff3f98342b64ecf7ff733/git.py | [
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for domain in domains: | for domain in self._domains[level]: | def _log(self, level, newline, raw, format, *args): # log level higher than logging level? if level > self._level: return | 3d7d63966162f8881fad278dc8cc728a7e5a1f77 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/1143/3d7d63966162f8881fad278dc8cc728a7e5a1f77/logger.py | [
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assert u"%(x)s, %()s" % {'x':u"abc", u''.encode('utf-8'):"def"} == u'abc, def' | try: value = u"%(x)s, %()s" % {'x':u"abc", u''.encode('utf-8'):"def"} except KeyError: print '*** formatting failed for "%s"' % "u'abc, def'" else: assert value == u'abc, def' | test('capwords', u'abc\t def \nghi', u'Abc Def Ghi') | 6b096315daae01cf10bf6b6f3074de1bb0c20fec /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12029/6b096315daae01cf10bf6b6f3074de1bb0c20fec/test_unicode.py | [
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if(self.target_name.count("kunit") == 1): assert self.scale_factor == 1 | if(self.target_name.count("kunit") == 1 or self.target_name.count("ask") == 1): assert self.scale_factor != 0.0 | def target_functor_w(self, selection = None): if(selection is None): f_obs = self.f_obs_w weights = self.weights_w abcd = self.abcd_w else: assert selection.size() == self.f_obs_w.data().size() f_obs = self.f_obs_w.select(selection) if(self.weights_w is not None): weights = self.weights_w.select(selection) else: weights = self.weights_w if(self.abcd_w is not None): abcd = self.abcd_w.select(selection) else: abcd = self.abcd_w if(self.target_name.count("k1") == 1): assert self.scale_factor == 0 return ls_k1(f_obs = f_obs, weights = weights, scale_factor = self.scale_factor, fix_scale_factor = False) if(self.target_name.count("k2") == 1): assert self.scale_factor == 0 return ls_k2(f_obs = f_obs, weights = weights, scale_factor = self.scale_factor, fix_scale_factor = False) if(self.target_name.count("kunit") == 1): assert self.scale_factor == 1 return ls_k1(f_obs = f_obs, weights = weights, scale_factor = self.scale_factor, fix_scale_factor = True) if(self.target_name == "ml"): return maximum_likelihood_criterion(f_obs = f_obs) if(self.target_name == "mlhl"): return maximum_likelihood_criterion_hl( f_obs = f_obs, abcd = abcd.data()) | 082c0769ffd6e9832016293c38a1c2d981e8374a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/696/082c0769ffd6e9832016293c38a1c2d981e8374a/target_functors.py | [
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opts, args = getopt.getopt(sys.argv[1:], "-p:-h", ["port", "host"]) | opts, args = getopt.getopt(sys.argv[1:], '-p:-h', ['port', 'host']) | def opts(): try: opts, args = getopt.getopt(sys.argv[1:], "-p:-h", ["port", "host"]) except getopt.GetoptError, err: print str(err) sys.exit() global host global port host = "localhost" port = 1984 for o, a in opts: if o == "-p": port = int(a) if o == "-h": host = a | 2c08272f70137ab264e2522f23535b6805965cfd /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/13081/2c08272f70137ab264e2522f23535b6805965cfd/BaseX.py | [
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if day > self.dayOfWeek: daysToWait = (day - self.dayOfWeek) - 1 self.rolloverAt = self.rolloverAt + (daysToWait * (60 * 60 * 24)) if day < self.dayOfWeek: daysToWait = (6 - self.dayOfWeek) + day | if day != self.dayOfWeek: if day < self.dayOfWeek: daysToWait = self.dayOfWeek - day - 1 else: daysToWait = 6 - day + self.dayOfWeek | def __init__(self, filename, when='h', interval=1, backupCount=0, encoding=None): BaseRotatingHandler.__init__(self, filename, 'a', encoding) self.when = string.upper(when) self.backupCount = backupCount # Calculate the real rollover interval, which is just the number of # seconds between rollovers. Also set the filename suffix used when # a rollover occurs. Current 'when' events supported: # S - Seconds # M - Minutes # H - Hours # D - Days # midnight - roll over at midnight # W{0-6} - roll over on a certain day; 0 - Monday # # Case of the 'when' specifier is not important; lower or upper case # will work. currentTime = int(time.time()) if self.when == 'S': self.interval = 1 # one second self.suffix = "%Y-%m-%d_%H-%M-%S" elif self.when == 'M': self.interval = 60 # one minute self.suffix = "%Y-%m-%d_%H-%M" elif self.when == 'H': self.interval = 60 * 60 # one hour self.suffix = "%Y-%m-%d_%H" elif self.when == 'D' or self.when == 'MIDNIGHT': self.interval = 60 * 60 * 24 # one day self.suffix = "%Y-%m-%d" elif self.when.startswith('W'): self.interval = 60 * 60 * 24 * 7 # one week if len(self.when) != 2: raise ValueError("You must specify a day for weekly rollover from 0 to 6 (0 is Monday): %s" % self.when) if self.when[1] < '0' or self.when[1] > '6': raise ValueError("Invalid day specified for weekly rollover: %s" % self.when) self.dayOfWeek = int(self.when[1]) self.suffix = "%Y-%m-%d" else: raise ValueError("Invalid rollover interval specified: %s" % self.when) | 5d512fa2e42642e6e4e143967a5d72b71cdec5e4 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/8546/5d512fa2e42642e6e4e143967a5d72b71cdec5e4/handlers.py | [
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[NOTE: this test currently FAILS due to trac \ essentially correct though. Should be revisited when that bug is resolved.] | def padic_sigma(self, p, N=20, E2=None, check=False, check_hypotheses=True): r""" Computes the p-adic sigma function with respect to the standard invariant differential $dx/(2y + a_1 x + a_3)$, as defined by Mazur and Tate, as a power series in the usual uniformiser $t$ at the origin. | e901b45b607d92ed1b9df94a3e96aead8ff614d6 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9890/e901b45b607d92ed1b9df94a3e96aead8ff614d6/ell_rational_field.py | [
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return self.execute('xls2csv -d UTF-8 -q 0 "%s" 2> nul:' % tmp_name) | html = self.execute('xlhtml "%s"' % tmp_name) return html2text(html, ignore_tags=('img',), indent_width=4, page_width=80) | def xls_convert(self, doc): """Convert Excel document to raw text""" tmp_name = self.saveFile(doc) if sys.platform == 'win32': return self.execute('xls2csv -d UTF-8 -q 0 "%s" 2> nul:' % tmp_name) else: return self.execute('xls2csv -d UTF-8 -q 0 "%s" 2> /dev/null' % tmp_name) | 48abb591653ffe58326fac6e17b9dcd2287ff3bc /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3287/48abb591653ffe58326fac6e17b9dcd2287ff3bc/__init__.py | [
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skip_chars = decoded_chars - len(self._decoded_text) | skip_chars = self._decoded_text_offset | def tell(self): if not self._seekable: raise IOError("underlying stream is not seekable") if not self._telling: raise IOError("telling position disabled by next() call") self.flush() position = self.buffer.tell() decoder = self._decoder if decoder is None or self._snapshot is None: if self._decoded_text: # This should never happen. raise AssertionError("pending decoded text") return position | dbe28e573e5c1227777db9dd630fac7732b81374 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/8546/dbe28e573e5c1227777db9dd630fac7732b81374/io.py | [
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parser.parse("wu-blastp.out") | parser.parse(outf) | def main(): from xml.sax import saxutils parser = blastp.make_parser(debug_level = 0) parser.setContentHandler(saxutils.XMLGenerator()) parser.parse("wu-blastp.out") #parser.parse("wu-sh_blastp.out") | 0c2f7f68124acbc5695851db91d462c21e90eef1 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/7167/0c2f7f68124acbc5695851db91d462c21e90eef1/wublast.py | [
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return filter(None, map(lambda n, e=self.entries: e.get(n), names)) | return map(lambda n, e=self.entries: e[_my_normcase(n)], names) | def _glob1(self, pattern, ondisk=True, source=False, strings=False): """ Globs for and returns a list of entry names matching a single pattern in this directory. | 2958b4895e2270f8e56503dbda89ab0dced75be0 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/12817/2958b4895e2270f8e56503dbda89ab0dced75be0/FS.py | [
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info, " /' < ", __tmpfilename, | info, " /' < ", __tmpfilename, | def addinfoToEachRaw(targetfile="",info=""): """ add info to each raw. """ __funcname="addinfoToEachRaw" __errmsg="Error"+" in "+__funcname if (targetfile is ""): print __errmsg, "Enough numbers of arguments are not given." sys.exit() if os.path.isfile(targetfile) is False: print __errmsg, targetfile, "does not exit!!" sys.exit() | a6565b4090de43bfb103a990979db74b9b2cddb1 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/5758/a6565b4090de43bfb103a990979db74b9b2cddb1/combiner_v2.py | [
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g2list = [gen for gen in self.generators if gen.HandlesEntry(entry, metadata)] | g2list = [gen for gen in self.generators if gen.HandlesEntry(entry, metadata)] | def Bind(self, entry, metadata): '''Bind an entry using the appropriate generator''' if 'altsrc' in entry.attrib: oldname = entry.get('name') entry.set('name', entry.get('altsrc')) entry.set('realname', oldname) del entry.attrib['altsrc'] try: ret = self.Bind(entry, metadata) entry.set('name', oldname) del entry.attrib['realname'] return ret except: entry.set('name', oldname) logger.error("Failed binding entry %s:%s with altsrc %s" \ % (entry.tag, entry.get('name'), entry.get('altsrc'))) logger.error("Falling back to %s:%s" % (entry.tag, entry.get('name'))) | 4d1544016635254d1c51ec77e3e26699d64b1d26 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/11867/4d1544016635254d1c51ec77e3e26699d64b1d26/Core.py | [
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print 'm=',m | def getentry(self, which): self._check() if which == 'in': cmd = IN_ENTRY_SENSE elif which == 'out': cmd = OUT_ENTRY_SENSE self.replycmd(cmd) h = self._getnumber(2) print 'h=',h m = self._getnumber(2) print 'm=',m s = self._getnumber(2) print 's=',s f = self._getnumber(2) print 'f=',f return (h, m, s, f) | 0b424aeee61cf467f726567c4a8deb7458742940 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12029/0b424aeee61cf467f726567c4a8deb7458742940/VCR.py | [
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if type(self.L[0]) in [list, tuple]: return type(self.L[0][index]) else: return type(self.L[0]) | return self.__types[index] | def on_get_column_type(self, index): if type(self.L[0]) in [list, tuple]: return type(self.L[0][index]) else: return type(self.L[0]) | cf5341a61a2498b093430a22411daa9f62f4e076 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8273/cf5341a61a2498b093430a22411daa9f62f4e076/pythonlistmodel.py | [
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class TestRq(NumpyTestCase): | class TestRQ(NumpyTestCase): | def check_random_complex(self): n = 20 for k in range(2): a = random([n,n])+1j*random([n,n]) q,r = qr(a) assert_array_almost_equal(dot(conj(transpose(q)),q),identity(n)) assert_array_almost_equal(dot(q,r),a) | ed190d870bbfc8f800477027b23dcafc112a646e /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/12971/ed190d870bbfc8f800477027b23dcafc112a646e/test_decomp.py | [
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print " * Generating includer..." sourceOutput = settingsStr srcEol = ""; | if options.sourceTemplateInputFile: options.sourceTemplateInputFile = os.path.normpath(options.sourceTemplateInputFile) if options.sourceTemplateOutputFile: options.sourceTemplateOutputFile = os.path.normpath(options.sourceTemplateOutputFile) print " * Generating script block..." sourceLineFeed = ""; | def execute(fileDb, moduleDb, options, pkgid="", names=[]): additionalOutput = [] ###################################################################### # SORT OF INCLUDE LIST ###################################################################### print print " SORT OF INCLUDE LIST:" print "----------------------------------------------------------------------------" if options.verbose: print " * Include (with dependencies): %s" % options.includeWithDeps print " * Include (without dependencies): %s" % options.includeWithoutDeps print " * Exclude (with dependencies): %s" % options.excludeWithDeps print " * Exclude (without dependencies): %s" % options.excludeWithoutDeps print " * Sorting %s classes..." % len(fileDb) sortedIncludeList = loader.getSortedList(options, fileDb, moduleDb) if len(sortedIncludeList) == 0: print " - No class files to include. Exciting!" sys.exit(1) else: print " - Including %s classes" % len(sortedIncludeList) if options.printIncludes: print print " PRINT OF INCLUDE ORDER:" print "----------------------------------------------------------------------------" print " * The files will be included in this order:" for fileId in sortedIncludeList: print " - %s" % fileId if options.printDeps: print print " OUTPUT OF DEPENDENCIES:" print "----------------------------------------------------------------------------" print " * These are all included files with their dependencies:" for fileId in sortedIncludeList: print " - %s" % fileId if len(fileDb[fileId]["loadtimeDeps"]) > 0: print " - Loadtime: " for depEntry in fileDb[fileId]["loadtimeDeps"]: print " - %s" % depEntry if len(fileDb[fileId]["afterDeps"]) > 0: print " - After: " for depEntry in fileDb[fileId]["afterDeps"]: print " - %s" % depEntry if len(fileDb[fileId]["runtimeDeps"]) > 0: print " - Runtime: " for depEntry in fileDb[fileId]["runtimeDeps"]: print " - %s" % depEntry if len(fileDb[fileId]["beforeDeps"]) > 0: print " - Before: " for depEntry in fileDb[fileId]["beforeDeps"]: print " - %s" % depEntry if len(fileDb[fileId]["optionalDeps"]) > 0: print " - Optional: " for depEntry in fileDb[fileId]["optionalDeps"]: print " - %s" % depEntry ###################################################################### # SOURCE MIGRATION ###################################################################### if options.migrateSource: print print " SOURCE MIGRATION:" print "----------------------------------------------------------------------------" print " * Migrate Source Code..." migrator.handle(sortedIncludeList, fileDb, options) # Return after migration: Ignore other jobs return ###################################################################### # GENERATION OF PRETTY PRINTED CODE ###################################################################### if options.fixSource: print print " FIX SOURCE CODE:" print "----------------------------------------------------------------------------" if options.verbose: print " * Fixing code..." else: print " * Fixing code: ", for fileId in sortedIncludeList: if options.verbose: print " - Reading %s" % fileId fileEntry = fileDb[fileId] filePath = fileEntry["path"] fileEncoding = fileEntry["encoding"] fileContent = filetool.read(filePath, fileEncoding) fixedContent = textutil.removeTrailingSpaces(textutil.tab2Space(textutil.any2Unix(fileContent), 2)) if fixedContent != fileContent: if options.verbose: print " - Storing modifications..." else: sys.stdout.write("!") sys.stdout.flush() filetool.save(filePath, fixedContent, fileEncoding) elif not options.verbose: sys.stdout.write(".") sys.stdout.flush() if not options.verbose: print # Return after fixing: Ignore other jobs return ###################################################################### # GENERATION OF PRETTY PRINTED CODE ###################################################################### if options.prettyPrint: print print " GENERATION OF PRETTY PRINTED CODE:" print "----------------------------------------------------------------------------" if options.verbose: print " * Pretty printing..." else: print " * Pretty printing: ", for fileId in sortedIncludeList: if options.verbose: print " - Compiling %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() prettyFileContent = compiler.compile(loader.getTree(fileDb, fileId, options), True) if not prettyFileContent.endswith("\n"): prettyFileContent += "\n" filetool.save(fileDb[fileId]["path"], prettyFileContent) if not options.verbose: print # Return after pretty print: Ignore other jobs return ###################################################################### # STRING OPTIMIZATION ###################################################################### if options.optimizeStrings: print print " STRING OPTIMIZATION:" print "----------------------------------------------------------------------------" if options.verbose: print " * Searching strings..." else: print " * Searching strings: ", stringMap = {} for fileId in sortedIncludeList: if options.verbose: print " - %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() localMap = loader.getStrings(fileDb, fileId, options) for value in localMap: if value in stringMap: stringMap[value] += localMap[value] else: stringMap[value] = localMap[value] if not options.verbose: print counter = 0 for value in stringMap: counter += stringMap[value] stringList = stringoptimizer.sort(stringMap) print " * Found %s strings (used %s times)" % (len(stringMap), counter) if options.verbose: print " * Replacing strings..." else: print " * Replacing strings: ", for fileId in sortedIncludeList: if options.verbose: print " - %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() stringoptimizer.replace(loader.getTree(fileDb, fileId, options), stringList, "$" + pkgid, options.verbose) if not options.verbose: print print " * Generating replacement..." additionalOutput.append(stringoptimizer.replacement(stringList, "$" + pkgid)) ###################################################################### # LOCAL VARIABLE OPTIMIZATION ###################################################################### if options.optimizeVariables: print print " LOCAL VARIABLE OPTIMIZATION:" print "----------------------------------------------------------------------------" if options.verbose: print " * Optimizing variables..." else: print " * Optimizing variables: ", for fileId in sortedIncludeList: if options.verbose: print " - %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() variableoptimizer.search(loader.getTree(fileDb, fileId, options), [], 0, "$", skipPrefix = options.optimizeVariablesSkipPrefix, debug = options.enableDebug) if not options.verbose: print ###################################################################### # NAME OBFUSCATION ###################################################################### if options.obfuscateIdentifiers: print print " OBFUSCATE IDENTIFIERS:" print "----------------------------------------------------------------------------" if options.verbose: print " * Obfuscating identifiers..." else: print " * Obfuscating identifiers: ", counter = 0 for fileId in sortedIncludeList: if options.verbose: print " - %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() counter += obfuscator.update(loader.getTree(fileDb, fileId, options), names, "$$") if not options.verbose: print print " * Updated %s names" % counter ###################################################################### # TOKEN STORAGE ###################################################################### if options.storeTokens: print print " TOKEN STORAGE:" print "----------------------------------------------------------------------------" if options.tokenOutputDirectory == None: print " * You must define the token output directory!" sys.exit(1) if options.verbose: print " * Storing tokens..." else: print " * Storing tokens: ", for fileId in sortedIncludeList: tokenString = tokenizer.convertTokensToString(loader.getTokens(fileDb, fileId, options)) if options.verbose: print " * writing tokens for %s (%s KB)..." % (fileIdm, len(tokenString) / 1000.0) else: sys.stdout.write(".") sys.stdout.flush() filetool.save(os.path.join(filetool.normalize(options.tokenOutputDirectory), fileId + config.TOKENEXT), tokenString) if not options.verbose: print ###################################################################### # TREE STORAGE ###################################################################### if options.storeTree: print print " TREE STORAGE:" print "----------------------------------------------------------------------------" if options.treeOutputDirectory == None: print " * You must define the tree output directory!" sys.exit(1) if options.verbose: print " * Storing tree..." else: print " * Storing tree: ", for fileId in sortedIncludeList: treeString = "<?xml version=\"1.0\" encoding=\"" + options.xmlOutputEncoding + "\"?>\n" + tree.nodeToXmlString(loader.getTree(fileDb, fileId, options)) if options.verbose: print " * writing tree for %s (%s KB)..." % (fileId, len(treeString) / 1000.0) else: sys.stdout.write(".") sys.stdout.flush() filetool.save(os.path.join(filetool.normalize(options.treeOutputDirectory), fileId + config.XMLEXT), treeString) if not options.verbose: print ###################################################################### # GENERATION OF API ###################################################################### if options.generateApiDocumentation: print print " GENERATION OF API:" print "----------------------------------------------------------------------------" if options.apiDocumentationJsonFile == None and options.apiDocumentationXmlFile == None: print " * You must define one of JSON or XML API documentation file!" docTree = None if options.verbose: print " * Generating API tree..." else: print " * Generating API tree: ", for fileId in sortedIncludeList: if options.verbose: print " - %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() docTree = api.createDoc(loader.getTree(fileDb, fileId, options), docTree) if not options.verbose: print if docTree: print " * Finalizing tree..." api.postWorkPackage(docTree, docTree) if options.apiDocumentationXmlFile != None: print " * Writing XML API file to %s" % options.apiDocumentationXmlFile xmlContent = "<?xml version=\"1.0\" encoding=\"" + options.xmlOutputEncoding + "\"?>\n" if options.addNewLines: xmlContent += "\n" + tree.nodeToXmlString(docTree) else: xmlContent += tree.nodeToXmlString(docTree, "", "", "") filetool.save(options.apiDocumentationXmlFile, xmlContent, options.xmlOutputEncoding) if options.apiDocumentationJsonFile != None: print " * Writing JSON API file to %s" % options.apiDocumentationJsonFile if options.addNewLines: jsonContent = tree.nodeToJsonString(docTree) else: jsonContent = tree.nodeToJsonString(docTree, "", "", "") filetool.save(options.apiDocumentationJsonFile, jsonContent, options.scriptOutputEncoding) ###################################################################### # CREATE COPY OF RESOURCES ###################################################################### if options.copyResources: print print " CREATE COPY OF RESOURCES:" print "----------------------------------------------------------------------------" resources.copy(options, sortedIncludeList, fileDb) ###################################################################### # GENERATION OF SETTINGS ###################################################################### if options.generateSourceScript or options.generateCompiledScript: settingsStr = "" if len(options.defineRuntimeSetting) != 0: print print " GENERATION OF SETTINGS:" print "----------------------------------------------------------------------------" print " * Processing input data..." settingsStr = settings.generate(options) if options.settingsScriptFile: print " * Storing result to %s" % options.settingsScriptFile filetool.save(options.settingsScriptFile, settingsStr) # clear settings for build and source settingsStr = "" ###################################################################### # GENERATION OF SOURCE VERSION ###################################################################### if options.generateSourceScript: print print " GENERATION OF SOURCE SCRIPT:" print "----------------------------------------------------------------------------" if options.sourceScriptFile == None: print " * You must define the source script file!" sys.exit(1) else: options.sourceScriptFile = os.path.normpath(options.sourceScriptFile) print " * Generating includer..." sourceOutput = settingsStr srcEol = ""; if options.addNewLines: srcEol = "\n"; if sourceOutput != "": settingsStr += srcEol # Define javascript loaders jsLoaders = {} # HTML-only: create <script> tags using document.write() jsLoaders["docwrite"] = """var includeJs=function(src){document.write('<script type="text/javascript" src="'+src+'"></script>')};""" # XHTML-compatible: load scripts using XMLHttpRequest and eval() them jsLoaders["xhrequest"] = """{var xhr=null;if(window.XMLHttpRequest)xhr=new XMLHttpRequest;else if(window.ActiveXObject){var s=["MSXML2.XMLHTTP.3.0","MSXML2.XMLHTTP.6.0","MSXML2.XMLHTTP","Microsoft.XMLHTTP"];for(var i=0;i<s.length;++i)try{xhr=new ActiveXObject(s[i])}catch(e){}};""" + srcEol + """if(!xhr){alert("Sorry, you need support for XMLHttpRequest in order to\\nload source builds into XHTML documents.");return}""" + srcEol + """var includeJs=function(src){xhr.open("GET", src, false);xhr.send(null);window.eval(xhr.responseText)}}""" # Source loader closure sourceOutput += """(function(sources){""" + srcEol # Differentiate source build sourceOutput += """qx.SOURCE_BUILD=true;""" + srcEol # Detect the node we are being called from sourceOutput += """var parentNode=document.getElementsByTagName('body')[0]||document.getElementsByTagName('head')[0];""" + srcEol # Autoselect a loader based on document type if options.sourceLoaderType == "auto": # Detect if document type is XHTML sourceOutput += """var isXHTML=false;""" + srcEol sourceOutput += """if(document.doctype&&document.doctype.publicId.match(/-\/\/W3C\/\/DTD XHTML/))isXHTML=true;""" + srcEol sourceOutput += """else if(parentNode.namespaceURI&&parentNode.namespaceURI.match(/\/xhtml/))isXHTML=true;""" + srcEol # Select the loader based on document type sourceOutput += """if(isXHTML)""" + jsLoaders["xhrequest"]+ srcEol sourceOutput += """else """ + jsLoaders["docwrite"] + srcEol # Use a fixed loader else: sourceOutput += jsLoaders[options.sourceLoaderType] + srcEol # Loading loop sourceOutput += """for(var i=0;i<sources.length;++i)includeJs(sources[i])""" + srcEol + """})""" sources = "" for fileId in sortedIncludeList: if fileDb[fileId]["classUri"] == None: print " * Missing source path definition for script input %s. Could not create source script file!" % fileDb[fileId]["classPath"] sys.exit(1) sources += srcEol + '"%s%s",' % (os.path.join(fileDb[fileId]["classUri"], fileDb[fileId]["pathId"].replace(".", os.sep)), config.JSEXT) # Pass the array with source files to include sourceOutput += "([" + sources[:-1] + srcEol + "]);" + srcEol print " * Storing output as %s..." % options.sourceScriptFile filetool.save(options.sourceScriptFile, sourceOutput, options.scriptOutputEncoding) ###################################################################### # GENERATION OF COMPILED VERSION ###################################################################### if options.generateCompiledScript: print print " GENERATION OF COMPILED SCRIPT:" print "----------------------------------------------------------------------------" compiledOutput = settingsStr + "".join(additionalOutput) if options.compiledScriptFile == None: print " * You must define the compiled script file!" sys.exit(1) if options.verbose: print " * Compiling..." else: print " * Compiling: ", for fileId in sortedIncludeList: if options.verbose: print " - Compiling %s" % fileId else: sys.stdout.write(".") sys.stdout.flush() compiledFileContent = compiler.compile(loader.getTree(fileDb, fileId, options), False, options.addNewLines, options.enableDebug) if options.addFileIds: compiledOutput += "\n\n\n/* ID: " + fileId + " */\n" + compiledFileContent + "\n" else: compiledOutput += compiledFileContent if not compiledOutput.endswith(";") and not compiledOutput.endswith("\n"): compiledOutput += ";" if not options.verbose: print print " * Storing output as %s..." % options.compiledScriptFile filetool.save(options.compiledScriptFile, compiledOutput, options.scriptOutputEncoding) | c747d776efd38fcc589afb4462ed3b74c1fc7c1b /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/5718/c747d776efd38fcc589afb4462ed3b74c1fc7c1b/generator.py | [
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Abelian variety factor of dimension 2 of J0(125), Abelian variety factor of dimension 2 of J0(125), Abelian variety factor of dimension 4 of J0(125) | Simple abelian subvariety 125a(1,125) of dimension 2 of J0(125), Simple abelian subvariety 125b(1,125) of dimension 2 of J0(125), Simple abelian subvariety 125c(1,125) of dimension 4 of J0(125) | def __getslice__(self, i, j): """ The slice i:j of decompositions of self. EXAMPLES: sage: J = J0(125); J.decomposition() [ Abelian variety factor of dimension 2 of J0(125), Abelian variety factor of dimension 2 of J0(125), Abelian variety factor of dimension 4 of J0(125) ] sage: J[:2] [ Abelian variety factor of dimension 2 of J0(125), Abelian variety factor of dimension 2 of J0(125) ] """ return self.decomposition()[i:j] | f30f87afcce1c095974cd5259aa7272b60928586 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9890/f30f87afcce1c095974cd5259aa7272b60928586/abvar.py | [
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recs.append(106, self.timestamp) | recs.append((106, self.timestamp)) | def update(self, mi): recs = [] try: from calibre.ebooks.conversion.config import load_defaults prefs = load_defaults('mobi_output') pas = prefs.get('prefer_author_sort', False) except: pas = False if mi.author_sort and pas: authors = mi.author_sort recs.append((100, authors.encode(self.codec, 'replace'))) elif mi.authors: authors = '; '.join(mi.authors) recs.append((100, authors.encode(self.codec, 'replace'))) if mi.publisher: recs.append((101, mi.publisher.encode(self.codec, 'replace'))) if mi.comments: recs.append((103, mi.comments.encode(self.codec, 'replace'))) if mi.isbn: recs.append((104, mi.isbn.encode(self.codec, 'replace'))) if mi.tags: subjects = '; '.join(mi.tags) recs.append((105, subjects.encode(self.codec, 'replace'))) | ffb1d3d770bd1f7764e724a7da0caa39a75038fb /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/9125/ffb1d3d770bd1f7764e724a7da0caa39a75038fb/mobi.py | [
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tableName = self.__getTableName( "bucket", typeName ) | tableName = _getTableName( "bucket", typeName ) | def __updateBucket( self, typeName, startTime, bucketLength, keyValues, bucketValues, proportion, connObj = False ): """ Update a bucket when coming from the raw insert """ tableName = self.__getTableName( "bucket", typeName ) cmd = "UPDATE `%s` SET " % tableName sqlValList = [] for pos in range( len( self.dbCatalog[ typeName ][ 'values' ] ) ): valueField = self.dbCatalog[ typeName ][ 'values' ][ pos ] value = bucketValues[ pos ] fullFieldName = "`%s`.`%s`" % ( tableName, valueField ) sqlValList.append( "%s=%s+(%s*%s)" % ( fullFieldName, fullFieldName, value, proportion ) ) sqlValList.append( "`%s`.`entriesInBucket`=`%s`.`entriesInBucket`+(%s*%s)" % ( tableName, tableName, bucketValues[-1], proportion ) ) cmd += ", ".join( sqlValList ) cmd += " WHERE `%s`.`startTime`='%s' AND `%s`.`bucketLength`='%s' AND " % ( tableName, startTime, tableName, bucketLength ) cmd += self.__generateSQLConditionForKeys( typeName, keyValues ) return self._update( cmd, conn = connObj ) | 5644734dd5f9b2176cf1b7afc4f6ab55941c88f0 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12864/5644734dd5f9b2176cf1b7afc4f6ab55941c88f0/AccountingDB.py | [
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sage: P1xP1 = ToricVariety(fan) sage: P1xP1.inject_coefficients() The last command does nothing, since ``P1xP1`` is defined over `\QQ`. Let's construct a toric variety over a more complicated field:: | def inject_coefficients(self, scope=None, verbose=True): r""" Inject generators of the base field of ``self`` into ``scope``. | bf8155d5074543bbf066ffe38ee5541218f84088 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9417/bf8155d5074543bbf066ffe38ee5541218f84088/toric_variety.py | [
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self.pmonitors[i].start(int(duration / self.rate) + 1) | self.pmonitors[k].start(int(duration / self.rate) + 1) | def start(self, duration=None): for i in range(len(self.cbs)): self.pmonitors[i] = PeriodicMonitor(self.cbs[i], self.rate) | 8c860a65b7d3d0c4154b79977b181d0ece64761d /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8117/8c860a65b7d3d0c4154b79977b181d0ece64761d/perception_monitor.py | [
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-1.0 | 0.5 + 0.866025403784*I | def _complex_double_(self, field): """ EXAMPLES: sage: CDF((-1)^(1/3)) 0.5 + 0.866025403784*I | 91ce32de726922bd909433810b61f39b42ddf8c5 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9417/91ce32de726922bd909433810b61f39b42ddf8c5/calculus.py | [
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(text, create_nearest_terms_box(req.args, pi, fi)), "") | (text, create_nearest_terms_box(req.args, pi, fi, ti))) | def search_pattern(req, p=None, f=None, colls=[], m=None, hit_hints=0): """Searches for pattern 'p' and field 'f' and returns dict of recIDs HitLists per each collection in 'colls'. - Optionally, the function accepts the match type argument 'm'. If it is set (e.g. from advanced search interface), then it performs this kind of matching. If it is not set, then a guess is made. - Calls search_in_bibwords() and/or search_in_bibxxx() functions. - If hit_hints is set, than print lots of hints on current search. Useful for debugging and/or when search gives zero hits. - Called by main().""" ## create empty output results set: results_out = {} for coll in colls: results_out[coll] = HitList() results_out[coll]._nbhits = 0 ## if p is not defined, return all hits in given collections: if not p: for coll in colls: results_out[coll]._set = collrecs_cache[coll]._set results_out[coll]._nbhits = collrecs_cache[coll]._nbhits return results_out ## now we are sure to have some p: good. ## create search units: opft_items = create_opft_search_units(req, p, f, m) #req.write("<p>%s" % opft_items) ## search regardless of collection: results_in_any_collection = HitList() results_in_any_collection_empty = 1 # to be able to skip first set operation for opft_item in opft_items: results_for_opft_item = {} oi, pi, fi, ti = opft_item[0], opft_item[1], opft_item[2], opft_item[3] # firstly, launch search for this pattern item: if ti == 'a' or ti == 'r': # we are doing either direct bibxxx search or phrase search or regexp search results_for_opft_item = search_in_bibxxx(req, pi, fi, ti) elif ti == 'w': # we are doing bibwords search results_for_opft_item = search_in_bibwords(req, pi, fi) else: print_warning(req, "Search type '%s' is not defined." % ti, "Error") return None if hit_hints: results_for_opft_item.calculate_nbhits() if results_for_opft_item._nbhits == 0: text = "Search term <em>%s</em>" % pi if fi: text += " inside <em>%s</em> " % fi print_warning(req, "%s did not match any record. Nearest terms in any collection are: %s" % (text, create_nearest_terms_box(req.args, pi, fi)), "") return results_out # empty if dbg: print_warning(req, "Item <strong>%s:%s</strong> gave %d hits." % (fi, pi, results_for_opft_item._nbhits), "") # secondly, apply the set intersect/union/disjunction functions: if dbg: t1 = os.times()[4] if results_in_any_collection_empty: results_in_any_collection = results_for_opft_item results_in_any_collection_empty = 0 else: if oi == '+': results_in_any_collection.intersect(results_for_opft_item) elif oi == '-': results_in_any_collection.difference(results_for_opft_item) elif oi == '|': results_in_any_collection.union(results_for_opft_item) else: print_warning(req, "Invalid set operation %s." % oi, "Error") if dbg: t2 = os.times()[4] print_warning(req, "Set operation '%s' took %.2f seconds." % (oi, (t2 - t1)), "Profile") ## before doing collection intersection, see how many hits we have now: results_in_any_collection.calculate_nbhits() ## return all hits if no collection list specified (useful for WebSearch Admin to determine collection ## recID universe): if colls == []: return results_in_any_collection ## were there no hits at all before doing collection intersection? if results_in_any_collection._nbhits == 0: # pattern not found in any public/private collection: if hit_hints: text = """All search terms matched but boolean query returned no hits. Please combine your search terms differently.""" url_args = req.args text += """<blockquote><table class="nearesttermsbox" cellpadding="0" cellspacing="0" border="0">""" for opft_item in opft_items: oi, pi, fi, ti = opft_item[0], opft_item[1], opft_item[2], opft_item[3] url_args_new = re.sub(r'(^|\&)p=.*?(\&|$)', r'\1p='+urllib.quote(pi)+r'\2', url_args) url_args_new = re.sub(r'(^|\&)f=.*?(\&|$)', r'\1f='+urllib.quote(fi)+r'\2', url_args_new) text += """<tr><td class="nearesttermsboxbody" align="right">%s</td><td class="nearesttermsboxbody" width="15"> </td><td class="nearesttermsboxbody" align="left"><a class="nearestterms" href="%s/search.py?%s">%s</a></td></tr>""" % \ (get_word_nbhits(pi, fi), weburl, url_args_new, pi) text += """</table></blockquote>""" print_warning(req, text, "") return results_out # still empty ## intersect with collection universe: if dbg: t1 = os.times()[4] if colls: for coll in colls: results_out[coll]._set = Numeric.bitwise_and(results_in_any_collection._set, collrecs_cache[coll]._set) if dbg: t2 = os.times()[4] print_warning(req, "Intersecting with collection hitlist universe took %.2f seconds." % ((t2 - t1)), "Profile") ## count number of hits in given collections: results_out_nb_hits_total = 0 for coll in colls: results_out[coll].calculate_nbhits() results_out_nb_hits_total += results_out[coll]._nbhits if results_out_nb_hits_total == 0: # pattern had been found but not in the collections chosen by the user: if hit_hints: # try to search in Home: results_in_Home = HitList() results_in_Home._set = Numeric.bitwise_and(results_in_any_collection._set, collrecs_cache[cdsname]._set) results_in_Home.calculate_nbhits() if results_in_Home._nbhits > 0: # some hits found in Home, so propose this search: url_args = req.args url_args = re.sub(r'(^|\&)cc=.*?(\&|$)', r'\2', url_args) url_args = re.sub(r'(^|\&)c=.*?(\&[^c]+=|$)', r'\2', url_args) url_args = re.sub(r'^\&+', '', url_args) url_args = re.sub(r'\&+$', '', url_args) print_warning(req, """Match found in other public collections: <a class="nearestterms" href="%s/search.py?%s">%d hits</a>.""" % (weburl, url_args, results_in_Home._nbhits), "") else: # no hits found in Home, recommend different search terms: text = """No public collection matched your query. If you were looking for a non-public document, please choose the desired restricted collection first.""" print_warning(req, text, "") return results_out | 535ed6a8d836745c0ddd7f1016fbe145d7c7bebd /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2139/535ed6a8d836745c0ddd7f1016fbe145d7c7bebd/search_engine.py | [
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cr, uid, ids, context=context) | cr, uid, ids, context=context) | def unlink(self, cr, uid, ids, context=None): for move in self.browse(cr, uid, ids, context=context): if move.state != 'draft': raise osv.except_osv(_('UserError'), _('You can only delete draft moves.')) return super(stock_move, self).unlink( cr, uid, ids, context=context) | 18be8e52469417aa8e0ec02e033c0942d0ad805f /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/7397/18be8e52469417aa8e0ec02e033c0942d0ad805f/stock.py | [
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psout = ps.stdout.read() psout.strip() | psout = ps.communicate()[0] | def main(): # Initialize the update url to just be the ip address of this machine. ip = getmyip() updateurl = 'http://' + ip + ':12345/' if len(sys.argv) == 1: sys.argv.append(updateurl) else: sys.argv[1] = updateurl # Create a temp directory to serve the updates from that we can # automatically clean up when we are done. tmpserver = tempfile.mkdtemp() try: test_updater.create_folders(tmpserver) ############################ # Run the rsync only tests # ############################ # Run the noup test (Nothing should fail, nothing should be updated) runRsyncTest('-x', tmpserver + '/noup/') # Run the wronghash test(There should be an RsyncError, and no updates) runRsyncTest('-e', tmpserver + '/wronghash/') # Run the badkeysig test (There should be no updates) runRsyncTest('-x', tmpserver + '/badkeysig/') # Run the corruptmeta test (there should be an RsyncError, and no updates) runRsyncTest('-e', tmpserver + '/corruptmeta/') # Run the updatenmmain test (only nmmain should get updated) runRsyncTest('-u', tmpserver + '/updatenmmain/', ['nmmain.py', 'metainfo']) # Run an update that should get us into a state where the softwareupdater has # a different key than what the metainfo is signed with. The next test will # ensure that our method of dealing with this situation works. runRsyncTest('-u', tmpserver + '/updater/', ['softwareupdater.py', 'metainfo']) # Run an update that should successfully update from the strange state from # the previous test. runRsyncTest('-u', tmpserver + '/updater_new/', ['nmmain.py', 'metainfo']) ##################################### # Finished running rsync only tests # ##################################### # Copy back everything from noup so the restart tests start with a # clean slate. for originalfile in glob.glob(tmpserver + '/noup/*'): shutil.copy(originalfile, os.path.basename(originalfile)) ################################## # Software updater restart tests # ################################## # Start the web server for the first update webserver = run_webserver(tmpserver + '/updater/') # Keep track of whether ps is there (it isn't on Windows) no_ps = False if nonportable.ostype == 'Windows': # If we are running on windows, disable the ps calls. no_ps = True # ps works different on a mac, where we need to use 'ps -aww' instead of # 'ps -ef'. if nonportable.ostype == 'Darwin': pscommand = 'ps -aww' else: pscommand = 'ps -ef' updateprocess = subprocess.Popen(['python', 'softwareupdater.py']) if not no_ps: # Only do the ps check if ps is available ps = subprocess.Popen(pscommand + ' | grep "softwareupdater.py" | grep -v grep', shell=True, stdout=subprocess.PIPE) psout = ps.stdout.read() print 'Initial ps out:' print psout if psout == '': print 'Failure to start initially' # Wait for 2 minutes for the update to happen and the # process to die. for junk in range(60): if updateprocess.poll() != None: break time.sleep(2) ret = updateprocess.returncode if ret != 10: if ret == None: raise Exception("First software updater never died.") elif ret == 55: raise Exception("Software updater failed to get the process lock.") elif ret == 1: raise Exception("Softwareupdater failed with an uncaught exception. \n\ See end of softwareupdater.old in v2 for details.") else: raise Exception("Unknown return code from the software updater (" + str(ret) + ")") else: print "Old softwareupdater returned correctly" if not no_ps: # Only do the ps check if ps is available ps = subprocess.Popen(pscommand + ' | grep "softwareupdater.py" | grep -v grep', shell=True, stdout=subprocess.PIPE) psout = ps.stdout.read() psout.strip() print 'After ps out:' print psout if psout == '': print 'New updater failed to start!' else: print 'softwareupdater restart success!' # We need to kill the webserver serving from /updater, and start one serving # from updater_new kill_webserver(webserver.pid, updateurl) webserver = run_webserver(tmpserver + '/updater_new/') print "Waiting 2 minutes for the second update to happen" # Wait 2 minutes for the second update to happen. # Is there a way to get a handle for the new softwareupdater? time.sleep(120) # If nmmain's version has been updated, the second update was a success! nmmainfile = file('nmmain.py', 'r') nmmaindata = nmmainfile.read() nmmainfile.close() if 'version = "1234"' in nmmaindata: print 'Second update a success!' else: print 'Second update failed to happen within 2 minutes' # Kill the webserver again now that we are all done with it. kill_webserver(webserver.pid, updateurl) ###################################### # End Software updater restart tests # ###################################### except: traceback.print_exc() finally: # Clean up the temporary server directory. # This throws an exception on Windows if a file is still in use (for example, # if the webserver started in a test couldn't be shut down). shutil.rmtree(tmpserver) | 1da3ab38f9ef6428f3669f460f649f1680e24e21 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/7263/1da3ab38f9ef6428f3669f460f649f1680e24e21/test_updater_local.py | [
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elif self.input_dir and os.path.isfile(self.input_dir): | """ if self.input_dir and os.path.isfile(self.input_dir): | def run(self): """ 2008-04-25 return None if QC_method_id==0 2008-04-20 for plone to call it just to get row_id2NA_mismatch_rate """ #database connection and etc db = Stock_250kDB.Stock_250kDB(drivername=self.drivername, username=self.user, password=self.passwd, hostname=self.hostname, database=self.dbname) db.setup() session = db.session session.begin() #transaction = session.create_transaction() self.cmp_data_filename = self.findOutCmpDataFilename(self.cmp_data_filename, self.QC_method_id, Stock_250kDB.QCMethod) import MySQLdb conn = MySQLdb.connect(db=self.dbname, host=self.hostname, user = self.user, passwd = self.passwd) curs = conn.cursor() self.curs = curs if self.debug: import pdb pdb.set_trace() readme = formReadmeObj(sys.argv, self.ad, README) session.save(readme) QC_method_id2snps_table = self.QC_method_id2snps_table if self.QC_method_id==0: self.cal_independent_NA_rate(db, self.min_probability, readme) row_id2NA_mismatch_rate = None else: #from variation.src.FilterStrainSNPMatrix import FilterStrainSNPMatrix header, strain_acc_list, category_list, data_matrix = read_data(self.cmp_data_filename) strain_acc_list = map(int, strain_acc_list) #it's ecotypeid, cast it to integer to be compatible to the later ecotype_id_ls from db snpData2 = SNPData(header=header, strain_acc_list=strain_acc_list, \ data_matrix=data_matrix, snps_table=QC_method_id2snps_table.get(self.QC_method_id)) #category_list is not used. if self.input_dir and os.path.isdir(self.input_dir): #04/22/08 Watch: call_info_id2fname here is fake, it's actually keyed by (array_id, ecotypeid) #no submission to db call_info_id2fname = self.get_array_id2fname(curs, self.input_dir) elif self.input_dir and os.path.isfile(self.input_dir): #it's file call_info_id2fname = None else: if self.run_type==2: #no filtering on call_info entries that have been QCed. filter_calls_QCed=0 elif self.run_type==1: filter_calls_QCed = 1 self.max_call_info_mismatch_rate = 1 #don't use this when doing accession-wise QC else: sys.stderr.write("run_type=%s is not supported.\n"%self.run_type) sys.exit(5) call_info_id2fname, call_info_ls_to_return = self.get_call_info_id2fname(db, self.QC_method_id, self.call_method_id, \ filter_calls_QCed, self.max_call_info_mismatch_rate, self.debug,\ min_no_of_non_NA_pairs=self.min_no_of_non_NA_pairs) if self.run_type==2: snps_name2snps_id = self.get_snps_name2snps_id(db) else: snps_name2snps_id = None if call_info_id2fname: if self.one_by_one and self.run_type==1: #one_by_one only for QC by accession row_id2NA_mismatch_rate = {} row_id12row_id2 = {} counter = 0 for call_info_id, value in call_info_id2fname.iteritems(): counter += 1 print "No", counter tmp_dict = {} tmp_dict[call_info_id] = value pdata = self.read_call_matrix(tmp_dict, self.min_probability) passingdata = self.qcDataMatrixVSsnpData(pdata, snps_name2snps_id, snpData2, curs, session, readme) row_id2NA_mismatch_rate.update(passingdata.row_id2NA_mismatch_rate) row_id12row_id2.update(passingdata.row_id12row_id2) del pdata if self.debug and counter==10: break else: pdata = self.read_call_matrix(call_info_id2fname, self.min_probability) passingdata = self.qcDataMatrixVSsnpData(pdata, snps_name2snps_id, snpData2, curs, session, readme) row_id2NA_mismatch_rate = passingdata.row_id2NA_mismatch_rate row_id12row_id2 = passingdata.row_id12row_id2 del pdata else: #input file is SNP by strain format. double header (1st two lines) header, snps_name_ls, category_list, data_matrix = FilterStrainSNPMatrix.read_data(self.input_dir, double_header=1) pdata = PassingData() pdata.ecotype_id_ls = header[0][2:] pdata.call_info_id_ls = header[1][2:] data_matrix = numpy.array(data_matrix) pdata.data_matrix = data_matrix.transpose() pdata.header = ['', ''] + snps_name_ls #fake a header for SNPData passingdata = self.qcDataMatrixVSsnpData(pdata, snps_name2snps_id, snpData2, curs, session, readme) row_id2NA_mismatch_rate = passingdata.row_id2NA_mismatch_rate row_id12row_id2 = passingdata.row_id12row_id2 del pdata if self.output_fname and self.run_type==1 and row_id2NA_mismatch_rate: self.output_row_id2NA_mismatch_rate(row_id2NA_mismatch_rate, self.output_fname) if self.run_type==1 and self.commit and not self.input_dir and row_id2NA_mismatch_rate: #if self.input_dir is given, no db submission. call_info_id2fname here is fake, it's actually keyed by (array_id, ecotypeid) #row_id2NA_mismatch_rate might be None if it's method 0. self.submit_to_call_QC(session, row_id2NA_mismatch_rate, self.QC_method_id, self.user, self.min_probability, \ row_id12row_id2, self.call_method_id, readme) if self.commit: curs.execute("commit") session.commit() else: session.rollback() self.row_id2NA_mismatch_rate = row_id2NA_mismatch_rate #for plone to get the data structure | e8a8bb38f1f872fe801dbb73dd4dc7dbd34bb539 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9645/e8a8bb38f1f872fe801dbb73dd4dc7dbd34bb539/QC_250k.py | [
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