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httpauth.findHTTPAuth(callback, host.decode('ascii','replace'), path.decode('ascii','replace'))
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try: httpauth.findHTTPAuth(callback, host.decode('ascii', 'replace'), path.decode('ascii', 'replace')) except UnicodeDecodeError: httpauth.findHTTPAuth(callback, host.decode('ascii', 'ignore'), path.decode('ascii', 'ignore'))
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def callback(authHeader): if self.cancelled: return if authHeader is not None: self.headers["Authorization"] = authHeader self.reallyStartRequest()
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591369ea099136e00a527abdb8bf32272db62c82 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/12354/591369ea099136e00a527abdb8bf32272db62c82/httpclient.py
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c_ftime = self.llexternal('ftime', [lltype.Ptr(self.TIMEB)],
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c_ftime = self.llexternal(FTIME, [lltype.Ptr(self.TIMEB)],
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def register_time_time(self): # Note: time.time() is used by the framework GC during collect(), # which means that we have to be very careful about not allocating # GC memory here. This is the reason for the _nowrapper=True.
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a0f59a944fe10d81aab27fc6f0db06718dbba302 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/6934/a0f59a944fe10d81aab27fc6f0db06718dbba302/ll_time.py
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self.vboxlayout10.addLayout(self.hboxlayout6)
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def setupUi(self, MainWindow): MainWindow.setObjectName("MainWindow") MainWindow.resize(QtCore.QSize(QtCore.QRect(0,0,776,593).size()).expandedTo(MainWindow.minimumSizeHint())) MainWindow.setWindowIcon(QtGui.QIcon("../../../.designer/backup"))
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79b42f390e6f53f319f4cccbce3f6018d111c729 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/1108/79b42f390e6f53f319f4cccbce3f6018d111c729/main_ui.py
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|
raise Exception( "Can't create tables: %s" % retVal[ 'Message' ]) def getMyProxyServer(self):
|
raise Exception( "Can't create tables: %s" % retVal[ 'Message' ] ) def getMyProxyServer( self ):
|
def __init__(self, requireVoms = False, useMyProxy = False, maxQueueSize = 10 ): DB.__init__(self,'ProxyDB','Framework/ProxyDB',maxQueueSize) random.seed() self.__defaultRequestLifetime = 300 # 5min self.__defaultTokenLifetime = 86400 * 7 # 1 week self.__defaultTokenMaxUses = 50 self.__vomsRequired = requireVoms self.__useMyProxy = useMyProxy self._minSecsToAllowStore = 3600 retVal = self.__initializeDB() if not retVal[ 'OK' ]: raise Exception( "Can't create tables: %s" % retVal[ 'Message' ])
|
71763bc5d615265855ff68fdb1be8903192a3f1b /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12864/71763bc5d615265855ff68fdb1be8903192a3f1b/ProxyDB.py
|
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cr.execute(""" create or replace view report_crm_case_features_user as ( select min(c.id) as id, c.user_id, count(*) as nbr from crm_case c left join project_task t on t.case_id=c.id left join project_project p on p.id = t.project_id where c.section_id = p.section_feature_id group by c.user_id, c.name )""")
|
global project if project: cr.execute(""" create or replace view report_crm_case_features_user as ( select min(c.id) as id, c.user_id, count(*) as nbr from crm_case c left join project_task t on t.case_id=c.id left join project_project p on p.id = t.project_id where c.section_id = p.section_feature_id and p.id=%s group by c.user_id, c.name )""",(project,)) else: cr.execute(""" create or replace view report_crm_case_features_user as ( select min(c.id) as id, c.user_id, count(*) as nbr from crm_case c left join project_task t on t.case_id=c.id left join project_project p on p.id = t.project_id where c.section_id = p.section_feature_id group by c.user_id, c.name )""")
|
def init(self, cr): cr.execute(""" create or replace view report_crm_case_features_user as ( select min(c.id) as id, c.user_id, count(*) as nbr from crm_case c left join project_task t on t.case_id=c.id left join project_project p on p.id = t.project_id where c.section_id = p.section_feature_id group by c.user_id, c.name )""")
|
b1d94ef431a6eadea6342813a49fcdf00ea519b1 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/7339/b1d94ef431a6eadea6342813a49fcdf00ea519b1/portal_project.py
|
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self.assertEqual(utility, 'abc')
|
self.assertEqual(utility, factory)
|
def test_setup_registry_request_factory(self): from repoze.bfg.registry import Registry from repoze.bfg.interfaces import IRequestFactory reg = Registry() config = self._makeOne(reg) config.setup_registry(request_factory='abc') utility = reg.getUtility(IRequestFactory) self.assertEqual(utility, 'abc')
|
b474b5af1069c24384343766c8bfb6768a8a9520 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/14321/b474b5af1069c24384343766c8bfb6768a8a9520/test_configuration.py
|
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def unix_getpass(prompt='Password: '):
|
def unix_getpass(prompt='Password: ', stream=None):
|
def unix_getpass(prompt='Password: '): """Prompt for a password, with echo turned off. Restore terminal settings at end. """ try: fd = sys.stdin.fileno() except: return default_getpass(prompt) old = termios.tcgetattr(fd) # a copy to save new = old[:] new[3] = new[3] & ~termios.ECHO # 3 == 'lflags' try: termios.tcsetattr(fd, termios.TCSADRAIN, new) passwd = _raw_input(prompt) finally: termios.tcsetattr(fd, termios.TCSADRAIN, old) sys.stdout.write('\n') return passwd
|
1f1f631dd29e292259f19f3b5e641e5ae0d429db /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3187/1f1f631dd29e292259f19f3b5e641e5ae0d429db/getpass.py
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'stop_after_init', 'logrotate', 'without_demo', 'netrpc', 'xmlrpc', 'xmlrpcs', 'syslog',
|
'stop_after_init', 'logrotate', 'without_demo', 'netrpc', 'xmlrpc', 'syslog',
|
def die(cond, msg): if cond: print msg sys.exit(1)
|
e8030b3852cc7d5a5b13d9d184a6c6a546a7d683 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12853/e8030b3852cc7d5a5b13d9d184a6c6a546a7d683/config.py
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items.append((col.name, getattr(self, col.name)))
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items.append((col.name, value))
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def _reprItems(self): items = [] for col in self.sqlmeta.columnList: value = getattr(self, col.name) r = repr(value) if len(r) > 20: value = r[:17] + "..." + r[-1] items.append((col.name, getattr(self, col.name))) return items
|
dc13ed5bcb44fc09f7376a7e2e1b9adbac031f00 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8798/dc13ed5bcb44fc09f7376a7e2e1b9adbac031f00/main.py
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if label.strip() != '']
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if label.strip()]
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def _generate_toc(self): """Generate key-to-(start, stop) table of contents.""" starts, stops = [], [] self._file.seek(0) next_pos = 0 label_lists = [] while True: line_pos = next_pos line = self._file.readline() next_pos = self._file.tell() if line == '\037\014' + os.linesep: if len(stops) < len(starts): stops.append(line_pos - len(os.linesep)) starts.append(next_pos) labels = [label.strip() for label in self._file.readline()[1:].split(',') if label.strip() != ''] label_lists.append(labels) elif line == '\037' or line == '\037' + os.linesep: if len(stops) < len(starts): stops.append(line_pos - len(os.linesep)) elif line == '': stops.append(line_pos - len(os.linesep)) break self._toc = dict(enumerate(zip(starts, stops))) self._labels = dict(enumerate(label_lists)) self._next_key = len(self._toc) self._file.seek(0, 2) self._file_length = self._file.tell()
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d373ead37954e8a4f6d449fdc08084eb0c428c76 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/8125/d373ead37954e8a4f6d449fdc08084eb0c428c76/mailbox.py
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def get_exe_bytes (self): import base64 return base64.decodestring (EXEDATA)
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ad2a84ae68ac2d93b5505f0c0ba349b667bb7c04 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3187/ad2a84ae68ac2d93b5505f0c0ba349b667bb7c04/bdist_wininst.py
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blogpath += '<a href="http://%s">%s</a>' % \ (os.path.join(webroot[1], sitepath), sitepath[sidx+1:])
|
if len(sitepath[sidx+1:]) > 0: blogpath += '<a href="http://%s">%s</a>' % \ (os.path.join(webroot[1], sitepath), sitepath[sidx+1:])
|
def generatePage(root, cfg, entry): data = {} data['title'] = entry['title'] data['author'] = entry['log'][-1]['author'] path, css = cfg.get('misc', 'css') relpath = '../'*root[len(path):].count('/') data['css'] = os.path.join(relpath, css) path, icon = cfg.get('misc', 'x-icon') relpath = '../'*root[len(path):].count('/') data['icon'] = os.path.join(relpath, icon) parts = publish_parts(entry['text'], writer_name='html') data['body'] = parts['html_body'].encode('utf-8') webroot = cfg.get('blog', 'webroot') blogname = cfg.get('blog', 'name') blogpath = '<a href="http://%s">%s</a>' % (webroot[1], blogname[1]) sitepath = root[len(webroot[0])+1:] sidx = -1 eidx = sitepath.find('/') while eidx != -1: blogpath += '<a href="http://%s">%s</a>' % \ (os.path.join(webroot[1], sitepath[:eidx]), sitepath[sidx+1:eidx]) sidx = eidx eidx = sitepath.find('/', eidx+1) blogpath += '<a href="http://%s">%s</a>' % \ (os.path.join(webroot[1], sitepath), sitepath[sidx+1:]) data['blogpath'] = blogpath data['banners'] = generateBanners(root, cfg) locale.setlocale(locale.LC_ALL, cfg.get('blog', 'locale')[1]) data['date'] = time.strftime(cfg.get('blog', 'timestamp')[1], entry['log'][0]['date']) path, tmplname = cfg.get('blog', 'template') f = file(os.path.join(path, tmplname)) template = f.read() f.close() return template % data
|
d4fbd9a27e2ff2b87f101233605dbf8307dcfa6d /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2412/d4fbd9a27e2ff2b87f101233605dbf8307dcfa6d/pages.py
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def reorder_tests(tests, first_test): try: n = tests.index(first_test) return [first_test] + tests[:n] + tests[n+1:] except ValueError: return tests
|
7870e1fadb0575b50c683b184d7f572837bcbb4c /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9981/7870e1fadb0575b50c683b184d7f572837bcbb4c/test_all.py
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req=req,
|
def modifyrank(req, ln=cdslang, rnkID='', rnkcode='', template='', cfgfile='', confirm=0): navtrail_previous_links = brc.getnavtrail() + """> <a class=navtrail href="%s/admin/bibrank/bibrankadmin.py/">BibRank Admin Interface</a> """ % (weburl) try: uid = getUid(req) except MySQLdb.Error, e: return error_page(req) auth = brc.check_user(uid,'cfgbibrank') if not auth[0]: return page(title="Modify rank method", body=brc.perform_modifyrank(rnkID=rnkID, ln=ln, rnkcode=rnkcode, cfgfile=cfgfile, template=template, confirm=confirm), uid=uid, language=ln, urlargs=req.args, navtrail = navtrail_previous_links, lastupdated=__lastupdated__) else: return page_not_authorized(req=req, text=auth[1], navtrail=navtrail_previous_links)
|
51fd4e75f5f8e85735d5b083099a24c7de0a5947 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12027/51fd4e75f5f8e85735d5b083099a24c7de0a5947/bibrankadmin.py
|
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request.write("Pages to revert:<br>%s" % "<br>".join(revertpages))
|
request.write("Pages to revert:<br>%s" % "<br>".join([wikiutil.escape(p) for p in revertpages]))
|
def revert_pages(request, editor, timestamp): _ = request.getText editor = wikiutil.url_unquote(editor, want_unicode=False) timestamp = int(timestamp * 1000000) log = editlog.EditLog(request) pages = {} revertpages = [] for line in log.reverse(): if line.ed_time_usecs < timestamp: break if not request.user.may.read(line.pagename): continue if not line.pagename in pages: pages[line.pagename] = 1 if repr(line.getInterwikiEditorData(request)) == editor: revertpages.append(line.pagename) request.write("Pages to revert:<br>%s" % "<br>".join(revertpages)) for pagename in revertpages: request.write("Begin reverting %s ...<br>" % pagename) msg = revert_page(request, pagename, editor) if msg: request.write("<p>%s: %s</p>" % ( Page.Page(request, pagename).link_to(request), msg)) request.write("Finished reverting %s.<br>" % pagename)
|
142c7d41b43d63cb7ddcfa4f67174999701c4bf1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/888/142c7d41b43d63cb7ddcfa4f67174999701c4bf1/Despam.py
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if REQUEST is None: return
|
if REQUEST is None: return
|
def manage_undo_transactions(self, transaction_info=(), REQUEST=None): """ """ undo=self._p_jar.db().undo
|
966fde8b9dcbf826b59950a8749914790b8a3c9a /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9658/966fde8b9dcbf826b59950a8749914790b8a3c9a/Undo.py
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cwd=os.path.join(topsrcdir, checkoutdir, parent))
|
cwd=os.path.join(topsrcdir, checkoutdir, parent), retryMax=options.retries)
|
def do_cvs_checkout(modules, tag, cvsroot, cvs, checkoutdir): """Check out a CVS directory into the checkoutdir subdirectory. modules is a list of directories to check out, e.g. ['extensions/irc'] """ for module in modules: (parent, leaf) = os.path.split(module) print "CVS checkout begin: " + datetime.datetime.utcnow().strftime("%Y-%m-%d %H:%M:%S UTC") if tag == 'HEAD': check_call_noisy([cvs, '-d', cvsroot, '-q', 'checkout', '-P', '-A', '-d', leaf, 'mozilla/%s' % module], cwd=os.path.join(topsrcdir, checkoutdir, parent)) else: check_call_noisy([cvs, '-d', cvsroot, '-q', 'checkout', '-P', '-r', tag, '-d', leaf, 'mozilla/%s' % module], cwd=os.path.join(topsrcdir, checkoutdir, parent)) print "CVS checkout end: " + datetime.datetime.utcnow().strftime("%Y-%m-%d %H:%M:%S UTC")
|
0376e156dff5362923ab01c36e488d21031811d4 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11044/0376e156dff5362923ab01c36e488d21031811d4/client.py
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class MiroUpdateDriver (SUUIBasedUpdateDriver):
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def updateAlert_finishedWithChoice_(self, alert, choice): alert.release()
|
def objectForUserDefaultsKey_(self, key): descriptor = prefs.Pref(key=key, default='', platformSpecific=False) return config.get(descriptor)
|
41bf08b438cd2494197892903b24e4db4970e69f /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/12354/41bf08b438cd2494197892903b24e4db4970e69f/sparkleupdater.py
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res = res + " " + x
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res = res + ' "%s"' % x
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def __repr__(self):
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e67561249eaa7bf8b9aed6633ade6e67a0806d73 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/3182/e67561249eaa7bf8b9aed6633ade6e67a0806d73/fetchmailconf.py
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for i in self.uploads: if msg.req == i.req and i.conn is None: i.conn = msg.conn i.req = None if i.transfertimer is not None: i.transfertimer.cancel() try: f = open(i.filename.replace("\\",os.sep),"rb") self.queue.put(slskmessages.UploadFile(i.conn,file = f,size = i.size)) i.status = _("Initializing transfer") i.file = f self.eventprocessor.logTransfer(_("Upload started: user %s, file %s") % (i.user, self.decode(i.filename))) except IOError, strerror: self.eventprocessor.logMessage(_("I/O error: %s") % strerror) i.status = _("Local file error") try: f.close() except: pass i.conn = None self.queue.put(slskmessages.ConnClose(msg.conn)) self.uploadspanel.update(i) break else: self.eventprocessor.logMessage(_("Unknown file request: %s") % str(vars(msg)),1)
|
for i in self.uploads: if msg.req == i.req and i.conn is None: i.conn = msg.conn i.req = None if i.transfertimer is not None: i.transfertimer.cancel() try: f = open(i.filename.replace("\\",os.sep),"rb") self.queue.put(slskmessages.UploadFile(i.conn,file = f,size = i.size)) i.status = _("Initializing transfer") i.file = f self.eventprocessor.logTransfer(_("Upload started: user %s, file %s") % (i.user, self.decode(i.filename))) except IOError, strerror: self.eventprocessor.logMessage(_("I/O error: %s") % strerror) i.status = _("Local file error") try: f.close() except: pass i.conn = None
|
def FileRequest(self, msg): """ Got an incoming file request. Could be an upload request or a request to get the file that was previously queued""" downloaddir = self.eventprocessor.config.sections["transfers"]["downloaddir"] incompletedir = self.eventprocessor.config.sections["transfers"]["incompletedir"]
|
aabec7c0ef6f4f7b08e22a98f52502d0393be0f3 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/8738/aabec7c0ef6f4f7b08e22a98f52502d0393be0f3/transfers.py
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'shortterm.adlogentry': { 'Meta': {'object_name': 'AdLogEntry'}, 'agent': ('django.db.models.fields.CharField', [], {'max_length': '256'}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'ipaddr': ('django.db.models.fields.CharField', [], {'max_length': '32'}), 'ts': ('django.db.models.fields.DateTimeField', [], {}) },
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def backwards(self, orm): # Deleting model 'AdLogEntry' db.delete_table('shortterm_adlogentry')
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6cd63885478004e45d58e9bdbaa96ad38b570b02 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12041/6cd63885478004e45d58e9bdbaa96ad38b570b02/0001_initial.py
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totalcpu += max(percentused, cpulimit)*elapsedtime
|
totalcpu += max(percentused, cpulimit)*elapsedtime
|
def enforce_cpu_quota(readfobj, cpulimit, frequency, childpid): global totaltime, totalcpu elapsedtime, percentused = get_time_and_cpu_percent(readfobj) # They get a free pass (likely their first or last time) if elapsedtime == 0.0: return # Increment total time totaltime += elapsedtime # Increment CPU use if ((totalcpu/totaltime) >= cpulimit): totalcpu += percentused*elapsedtime # Don't apply max function, allow the average to drop else: # Set a minimum for percentused, enfore a use it or lose it policy totalcpu += max(percentused, cpulimit)*elapsedtime #print (totalcpu/totaltime), percentused, elapsedtime, totaltime, totalcpu # If average CPU use is fine, then continue if (totalcpu/totaltime) <= cpulimit: time.sleep(frequency) # If we don't sleep, this process burns cpu doing nothing return # They must be punished by stopping os.kill(childpid, signal.SIGSTOP) # we'll stop them for at least long enough to even out the damage # why does this formula work? Where does *2 come from? # I checked and sleep is sleeping the full time... # I've verified the os.times() data tracks perfectly... # I've tried it will different publishing frequencies and it works... # this formula works for different cpulimits as well # for very low sleep rates, this doesn't work. The time is way over. # for high sleep rates, this works fine. # Old Stop Time #stoptime = (((percentused-cpulimit) / cpulimit)-1) * elapsedtime * 2 # New stoptime # Determine how far over the limit the average, and punish progressively # Also, unsure about the *2 but it does seem to work.... stoptime = ((totalcpu/totaltime) - cpulimit) * totaltime * 2 # Sanity Check # There is no reason to punish a process for more than # frequency / cpulimit # BECAUSE that means that if a process uses 100% during a sampling interval, # the resulting stop+use interval should average to the CPU limit # stoptime = min(frequency/cpulimit, stoptime) #print "Stopping: ", stoptime time.sleep(stoptime) # And now they can start back up! os.kill(childpid, signal.SIGCONT) # If stoptime < frequency, then we would over-sample if we don't sleep if (stoptime < frequency): time.sleep(frequency-stoptime)
|
e1823dc70527bec11e574ce421aa24df304b075e /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/7263/e1823dc70527bec11e574ce421aa24df304b075e/nonportable.py
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children = self.viewhandler.retrieve_children(session, parent, label)
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children = self.viewhandler.retrieve_children(session, parent, label, uniqueContext)
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def get_children(self,parent, label=None): """Load the children of an object from the database Attribute: parent -- An object derived from datamanager.objects.ObjectDict or the integer id describing this object. Raises: RequestObjectError -- If the objects whos children should be loaded is not properly saved in the database """ session = self.Session() children = self.viewhandler.retrieve_children(session, parent, label) session.close() return children
|
9101ee5ed942f49b4c7452eb911c64df9b35601a /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/11635/9101ee5ed942f49b4c7452eb911c64df9b35601a/proxy.py
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self._fileno = self.socket.fileno()
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self._fileno = self.socket
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def create_socket(self, family, type): self.family_and_type = family, type self.socket = socket.socket(family, type) self.socket.setblocking(0) self._fileno = self.socket.fileno() self.add_channel()
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fb2239973bdaffdbf4cfe94e1bf122fd67b170d6 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/6753/fb2239973bdaffdbf4cfe94e1bf122fd67b170d6/asyncore.py
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class StreamWriter(Codec,codecs.StreamWriter): pass
|
class StreamWriter(codecs.StreamWriter): encode = mbcs_encode
|
def _buffer_decode(self, input, errors, final): return mbcs_decode(input,self.errors,final)
|
961b91bd3c48af639acbf20bbf15a85e7152ff6e /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8546/961b91bd3c48af639acbf20bbf15a85e7152ff6e/mbcs.py
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def _shmemAlloc(size):
|
def _shmemAlloc(size, type):
|
def _shmemAlloc(size): # starts out UNprotected return ExprCall(ExprVar('Shmem::Alloc'), args=[ _shmemBackstagePass(), size ])
|
d9fcd325bb89a6dd20a5eefb536c3f9ee4bdf884 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11102/d9fcd325bb89a6dd20a5eefb536c3f9ee4bdf884/lower.py
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print "Maay Realm : creating session for avatar", avatarId,
|
print "MaayRealm : creating session for avatar", avatarId,
|
def createUserSession(self, avatarId, querier): """associate a querier to an avatarId. Use avatarId=None for the internal private database connection""" print "Maay Realm : creating session for avatar", avatarId, print "with a", type(querier), "querier." self._sessions[avatarId] = querier
|
c69488baab48113060c1176346c929048f89832a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2259/c69488baab48113060c1176346c929048f89832a/server.py
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def _setSacks(self, value): self._pkgSack = value
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def _setSacks(self, value): self._pkgSack = value
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e1d2f06ab3a5de4006ebffea34315ac5c5d6ec0b /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/5445/e1d2f06ab3a5de4006ebffea34315ac5c5d6ec0b/__init__.py
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return def _count_bondpoints(self, bondpoints): """ """ self._counted_atoms += len(bondpoints)
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if 0: print "counted atom", atom, "from chunk", chunk bondpoints = atom.singNeighbors() self._counted_atoms += (1 + len(bondpoints)) if 0 and bondpoints: print "counted bondpoints", bondpoints print "their base atom lists are", [bp.neighbors() for bp in bondpoints] for bp in bondpoints: assert len(bp.neighbors()) == 1 and bp.neighbors()[0] is atom and bp.molecule is chunk
|
def _count_atom(self, atom): """ """ self._counted_atoms += 1 chunk = atom.molecule # no need to check chunk for being None, killed, _nullMol, etc -- # caller will do that if necessary self._counted_chunks[id(chunk)] = chunk return
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5c7b29f5a6435a205e8fef4630656f094a7053f0 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/11221/5c7b29f5a6435a205e8fef4630656f094a7053f0/DnaLadderRailChunk.py
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OPTIONS = [{'wideBuild': True}]
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OPTIONS = [{'wideBuild': False}, {'wideBuild': True}]
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def removeMySQL(databaseUrls): return [url for url in databaseUrls if not url.startswith('mysql://')]
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e8178f9cde5e6cf38fb27545ff38e41c9ae489ed /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11128/e8178f9cde5e6cf38fb27545ff38e41c9ae489ed/build.py
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self.creds = credentials.SSHPrivateKey(self.username, self.algorithm, self.blob, self.data,
|
self.creds = credentials.SSHPrivateKey(self.username, self.algorithm, self.blob, self.data,
|
def setUp(self): Session = init_db(self.test_db.name) self.jobdb = JobDatabase(Session) self.workerdb = WorkerDatabase(Session) self.clientdb = ClientDatabase(Session) self.dsage_server = DSageServer(self.jobdb, self.workerdb, self.clientdb, log_level=5) self.realm = Realm(self.dsage_server) self.p = _SSHKeyPortalRoot(portal.Portal(self.realm)) self.p.portal.registerChecker( PublicKeyCredentialsCheckerDB(self.clientdb)) self.client_factory = pb.PBServerFactory(self.p) self.hostname = 'localhost' self.server = reactor.listenTCP(0, self.client_factory) self.port = self.server.getHost().port
|
c9375d5a2f6f15e62e3d47a256c35f844f980db3 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9890/c9375d5a2f6f15e62e3d47a256c35f844f980db3/test_remote.py
|
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For example, the dashed cell below is the outer_rim of the partitions `(4,1)`::
|
The outer rim of the partition `[4,1]` consists of the cells marked with ``
|
def outer_rim(self): """ Returns the outer rim of ``self``
|
51f56d3cf09714ec116e12377fb73f8de4d6ae00 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9890/51f56d3cf09714ec116e12377fb73f8de4d6ae00/partition.py
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] |
sage: import operator
|
def derivative(self, ex, operator): """ EXAMPLES::
|
a2648bce7d829c98198521873589084f0019ebd3 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9417/a2648bce7d829c98198521873589084f0019ebd3/expression_conversions.py
|
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ctx.rectangle(*(self.coordinates(x-0.5, y-0.5) + self.coordinates(x + w + 0.5, y + h + 0.5)))
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ctx.rectangle(*(self.coordinates(x-0.5, y + h + 0.5) + self.coordinates(x + w + 0.5, y - 0.5)))
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def paintSquares(self, ctx, x, y, w, h): ctx.rectangle(*(self.coordinates(x-0.5, y-0.5) + self.coordinates(x + w + 0.5, y + h + 0.5))) ctx.clip() self.paint(ctx)
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2681f4bcd14c854eb6599987b683ba8a06ea196d /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/10214/2681f4bcd14c854eb6599987b683ba8a06ea196d/maze.py
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blocks.append({'type': kind, 'base': {'offset': fromline - 1, 'lines': []}, 'changed': {'offset': toline - 1, 'lines': []}})
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block = {'type': kind, 'base': {'offset': fromline - 1, 'lines': []}, 'changed': {'offset': toline - 1, 'lines': []}} blocks.append(block) else: block = blocks[-1]
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def htmlify(match): div, mod = divmod(len(match.group(0)), 2) return div * ' ' + mod * ' '
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e1a8a539d46d5b9614fd8fd97db894c5d4a82835 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/2831/e1a8a539d46d5b9614fd8fd97db894c5d4a82835/patch.py
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if match[0] == '!': return match[1:] else: return self.simple_tag_handler('<sup>', '</sup>')
|
return self.simple_tag_handler(match, '<sup>', '</sup>')
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def _superscript_formatter(self, match, fullmatch): if match[0] == '!': return match[1:] else: return self.simple_tag_handler('<sup>', '</sup>')
|
7cfaf9e41e58aa1a79fc07abc5bd868b4121f4f9 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/2831/7cfaf9e41e58aa1a79fc07abc5bd868b4121f4f9/formatter.py
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this = apply(_quickfix.new_DiscretionOffsetValue, args)
|
this = _quickfix.new_DiscretionOffsetValue(*args)
|
def __init__(self, *args): this = apply(_quickfix.new_DiscretionOffsetValue, args) try: self.this.append(this) except: self.this = this
|
7e632099fd421880c8c65fb0cf610d338d115ee9 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8819/7e632099fd421880c8c65fb0cf610d338d115ee9/quickfix.py
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pass
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if node.get('ids'): self.out += self.ids_to_labels(node) + ['\n']
|
def depart_image(self, node): pass
|
4d433b8e438a145ac037d2160decc5abe210ca46 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/5620/4d433b8e438a145ac037d2160decc5abe210ca46/__init__.py
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"".join(map(lambda i: "0123456789ABCDEF"[i], digits)) + "L"
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"".join(map(lambda i: "0123456789abcdef"[i], digits)) + "L"
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def slow_format(self, x, base): if (x, base) == (0, 8): # this is an oddball! return "0L" digits = [] sign = 0 if x < 0: sign, x = 1, -x while x: x, r = divmod(x, base) digits.append(int(r)) digits.reverse() digits = digits or [0] return '-'[:sign] + \ {8: '0', 10: '', 16: '0x'}[base] + \ "".join(map(lambda i: "0123456789ABCDEF"[i], digits)) + "L"
|
c3281563dd6a44a2ed04056618dbb248acf6557c /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12029/c3281563dd6a44a2ed04056618dbb248acf6557c/test_long.py
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self.body.clear()
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def show_music_information(self, music): if not self.is_visible: return
|
43a0f8d3d71fafa93f66b7de5c6311692b8b2ccd /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/5169/43a0f8d3d71fafa93f66b7de5c6311692b8b2ccd/aspyplayer.py
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self.setSessionInfo([MESSAGE_SAVEDCHANGES % self.utGetTodayDate()])
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self.setSessionInfoTrans(MESSAGE_SAVEDCHANGES, date=self.utGetTodayDate())
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def admin_deleteitems(self, id='', ids=[], REQUEST=None): """ """ ob = self.getRateListById(id) if ob is not None: ob.manage_delete_items(self.utConvertToList(ids)) if REQUEST: self.setSessionInfo([MESSAGE_SAVEDCHANGES % self.utGetTodayDate()]) REQUEST.RESPONSE.redirect('%s/admin_ratelist_html?id=%s' % (self.absolute_url(), id))
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9ebbed155972a1637136ab18d27c45686fe46b10 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3287/9ebbed155972a1637136ab18d27c45686fe46b10/NyConsultation.py
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self.__testMethodDoc = testMethod.__doc__
|
self._testMethodDoc = testMethod.__doc__
|
def __init__(self, methodName='runTest'): """Create an instance of the class that will use the named test method when executed. Raises a ValueError if the instance does not have a method with the specified name. """ try: self.__testMethodName = methodName testMethod = getattr(self, methodName) self.__testMethodDoc = testMethod.__doc__ except AttributeError: raise ValueError, "no such test method in %s: %s" % \ (self.__class__, methodName)
|
dcb7d97fc6f9b6b40c3037899d0a94b46e4e2b77 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8125/dcb7d97fc6f9b6b40c3037899d0a94b46e4e2b77/unittest.py
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indx = numpy.argsort( perm ) return numpy.take( flag, indx[:len( ar1 )] )
|
ii = numpy.where( flag * aux2 ) aux = perm[ii+1] perm[ii+1] = perm[ii] perm[ii] = aux indx = numpy.argsort( perm )[:len( ar1 )] return numpy.take( flag, indx )
|
def setmember1d( ar1, ar2 ): """Return an array of shape of ar1 containing 1 where the elements of ar1 are in ar2 and 0 otherwise.""" ar = numpy.concatenate( (ar1, ar2 ) ) perm = numpy.argsort( ar ) aux = numpy.take( ar, perm ) flag = ediff1d( aux, 1 ) == 0 indx = numpy.argsort( perm ) return numpy.take( flag, indx[:len( ar1 )] )
|
70bf077d4de719bbe527ecd1eb60e7c0c2b2957b /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12971/70bf077d4de719bbe527ecd1eb60e7c0c2b2957b/arraysetops.py
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if kind is not None: kind._setupClass(cls) if parent is None:
|
if itsKind is not None: itsKind._setupClass(cls) if itsParent is None:
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def __init__(self, name=None, parent=None, kind=None, _uuid=None, _noMonitors=False, **values): """ Construct an Item.
|
bce2bcce626fee54a986d1b25fc98fb223380651 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9228/bce2bcce626fee54a986d1b25fc98fb223380651/Item.py
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m235 to share a single generator". Unfortunately, using generators this way creates a reference-cycle that the garbage collector (currently) can't clean up, so we have to explicitly break the cycle (by calling the inner generator's close() method)
|
m235 to share a single generator".
|
... def tail(g):
|
b711645931fe300a2e48a1ce3e68ab2bcdfdb477 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8125/b711645931fe300a2e48a1ce3e68ab2bcdfdb477/test_generators.py
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result = reduce(lambda x,y: x*y, args) % 65536
|
result = self._unmake_signed( self._make_signed(a) * self._make_signed(b))
|
def op_mul(self, *args): """Signed 16-bit multiplication.""" result = reduce(lambda x,y: x*y, args) % 65536 self._write_result(result)
|
93d0b695130d8c250df6b688d1af1bb43176f564 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/2052/93d0b695130d8c250df6b688d1af1bb43176f564/zcpu.py
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block_info = {
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""" Default means 'use default function instead' """ BLOCK_INFO = {
|
def createFields(self): yield Bit(self, "has_next_vol", "Whether there is another next volume") yield Bit(self, "has_data_crc", "Whether a CRC value is present") yield Bit(self, "rev_space", "??") yield Bit(self, "has_vol_number", "Whether the volume number is present") yield Bits(self, "unused[]", 4, "??") for bit in commonFlags(self): yield bit
|
a9c108cfa3009177581752043b9da12659e5c31a /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9327/a9c108cfa3009177581752043b9da12659e5c31a/rar.py
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def test_table_header2(self):
|
def test_table_th_td(self): """Test <th> tags with <td> tags"""
|
def test_table_header2(self): html = """<html xmlns="http://www.w3.org/1999/xhtml"> <table> <tr> <th>Cell1</th> <th>Cell2</th> </tr> <tr> <td>Cell3</td> <td>Cell4</td> </tr> </table> </html> """ odt = xhtml2odt(html) # remove namespaces odt = re.sub('(xmlns:[a-z0-9=:".-]+\s+)*', '', str(odt)) # remove comments odt = re.sub('(<!--[a-z0-9=-]+-->)*', '', odt) print odt assert re.search(r""" <table:table \s+ table:style-name="table-default"> \s* <table:table-column \s+ table:number-columns-repeated="2"/> \s* <table:table-header-rows> \s* <table:table-row> \s*
|
9cd87a34e72c7238b1b710177511eae4bd213897 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/7063/9cd87a34e72c7238b1b710177511eae4bd213897/test_tables.py
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return source
|
return tools.ustr(source)
|
def _get_source(self, cr, uid, name, tt, lang, source=None): if not lang: return '' if source: #if isinstance(source, unicode): # source = source.encode('utf8') cr.execute('select value ' \ 'from ir_translation ' \ 'where lang=%s ' \ 'and type=%s ' \ 'and name=%s ' \ 'and src=%s', (lang or '', tt, tools.ustr(name), source)) else: cr.execute('select value ' \ 'from ir_translation ' \ 'where lang=%s ' \ 'and type=%s ' \ 'and name=%s', (lang or '', tt, tools.ustr(name))) res = cr.fetchone() trad = res and res[0] or '' if source and not trad: return source return trad
|
d247901dcc8482d7f02af82eac34e30891132c96 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12853/d247901dcc8482d7f02af82eac34e30891132c96/ir_translation.py
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except KeyError, ValueError as errmsg: msg = "stream translation error (%s) " % errmsg
|
except (KeyError, ValueError), errmsg: msg = "stream translation error (%s) " % str(errmsg)
|
def parsetuple(self,xmltuple): """ Parse an XML tuple returned by pyRXP into a dictionary of LIGO metadata elements. The dictionary contains one entry for each table found in the XML tuple. """ # first extract all the table and columns from the tuple from the # children of the ligo lightweight parent tuple table = {} tupleidx = 0 for tag in xmltuple[2]: if tag[0] == 'Table' or tag[0] == 'table': tab = tag[1]['Name'].encode('ascii').lower() try: tab = self.tabrx.match(tab).group(2) except AttributeError: raise LIGOLwParseError, 'unable to parse a valid table name '+tab # initalize the table dictionary for this table table[tab] = { 'pos' : tupleidx, 'column' : {}, 'stream' : (), 'query' : '' } # parse for columns in the tables children # look for the column name and type in the attributes # store the index in which the columns were found as # we need this to decode the stream later for subtag in tag[2]: if subtag[0] == 'Column' or subtag[0] == 'column': col = subtag[1]['Name'].encode('ascii').lower() try: col = self.colrx.match(col).group(3) except AttributeError: raise LIGOLwParseError, 'unable to parse a valid column name '+col try: typ = subtag[1]['Type'].encode('ascii').lower() except KeyError: raise LIGOLwParseError, 'type is missing for column '+col table[tab]['column'][col] = typ table[tab].setdefault('orderedcol',[]).append(col) tupleidx += 1
|
0f66fd247e04dfe69e9908fe799931503dac5d24 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/5758/0f66fd247e04dfe69e9908fe799931503dac5d24/ldbd.py
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self.Blocked = False
|
self.Block = 0
|
def __init__(self, main, context): self.Context = context self.Main = main self.Blocked = False rightChild = gtk.VBox() rightChild.set_border_width(10) # Auto sort autoSort = gtk.CheckButton(_("Automatic plugin sorting")) rightChild.pack_start(autoSort, False, False, 10) # Lists listBox = gtk.HBox() listBox.set_spacing(5)
|
23240c9cd4341c1551a27b8ee7d7cc16beeb2bcd /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/7183/23240c9cd4341c1551a27b8ee7d7cc16beeb2bcd/Pages.py
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if self.helo_resp is None and self.ehlo_resp is None: if not (200 <= self.ehlo()[0] <= 299): (code,resp) = self.helo() if not (200 <= code <= 299): raise SMTPHeloError(code, resp)
|
self.ehlo_or_helo_if_needed()
|
def sendmail(self, from_addr, to_addrs, msg, mail_options=[], rcpt_options=[]): """This command performs an entire mail transaction.
|
bde4ae4bdeb3328fbc744662ecdebfac52b2d5ba /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/8546/bde4ae4bdeb3328fbc744662ecdebfac52b2d5ba/smtplib.py
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if mask.ndim and mask.all():
|
if mask.ndim and (not mask.dtype.names and mask.all()):
|
def __call__(self, *args, **params): methodname = self.__name__ data = self.obj._data mask = self.obj._mask cls = type(self.obj) result = getattr(data, methodname)(*args, **params).view(cls) result._update_from(self.obj) if result.ndim: if not self._onmask: result.__setmask__(mask) elif mask is not nomask: result.__setmask__(getattr(mask, methodname)(*args, **params)) else: if mask.ndim and mask.all(): return masked return result
|
4b9c0f2208305046275c74ec1c9d6fda8af1f5bb /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/14925/4b9c0f2208305046275c74ec1c9d6fda8af1f5bb/core.py
|
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for func in ['__import__', 'eval', 'dir', 'open', 'exit']: del g['__builtins__'][func]
|
for func in FORBIDDEN_BUILTINS: if func in g['__builtins__']: del g['__builtins__'][func] for func in FORBIDDEN_GLOBALS: if func in g: del g[func]
|
def _eval_worker(pipe): ''' Pops the incoming expressions from given Pipe, evaluates them and sends the back. Continues indefinetaly. ''' # Construct a (relatively) safe dictionary of globals # to be used by evaluated expressions g = math.__dict__.copy() g['__builtins__'] = __builtins__.copy() for func in ['__import__', 'eval', 'dir', 'open', 'exit']: del g['__builtins__'][func] while True: try: exp = pipe.recv() except EOFError: return # Evaluate expression try: res = eval(exp, g) res = "= " + str(res) except SyntaxError: res = "Syntax error." except ValueError: res = "Evaluation error." except NameError: res = "Unknown or forbidden function." except MemoryError: res = "Out of memory." except Exception: res = "Error." # Check whether the result isn't obscenely big try: if res and len(res) > 1000: res = "Too long result." except TypeError, AttributeError: pass # Push the result via pipe pipe.send(res)
|
4548997123946d6de39540d519fd03107f2de4fd /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12347/4548997123946d6de39540d519fd03107f2de4fd/standard.py
|
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except: locale.setlocale(locale.LC_ALL, 'en_US')
|
except: locale.setlocale(locale.LC_ALL, '')
|
def tt_get_messages(self, query, skey, rkey): """ Returns a list of messages, filtered and sorted according with the given parameters. @param query: query against the list of messages @type query: string @param skey: the sorting key @type skey: string @param rkey: indicates if the list must be reversed @type rkey: string """ msgs = [] msgs_append = msgs.append langs = self.tt_get_languages_mapping() if skey == 'msg': skey = 0 try: regex = re.compile(query.strip().lower()) except: regex = re.compile('') for m, t in self._messages.items(): if regex.search(m.lower()): e = [self.utToUtf8(m)] i = 1 for lang in langs: if skey == lang['code']: skey = i e.append(len(t.get(lang['code'], '').strip())>0) i = i + 1 msgs_append(tuple(e)) #sort messages t = [(x[skey], x) for x in msgs] if skey == 0: #sort by message default_locale = locale.setlocale(locale.LC_ALL) try: locale.setlocale(locale.LC_ALL, 'en') except: locale.setlocale(locale.LC_ALL, 'en_US') t.sort(lambda x, y: locale.strcoll(x[0], y[0])) locale.setlocale(locale.LC_ALL, default_locale) else: #sort by translation status t.sort() if rkey: t.reverse() msgs = [val for (key, val) in t] return msgs
|
cc3b6fdb9ce6364fc4d4f23a4d0e93c1a739ea7c /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/3287/cc3b6fdb9ce6364fc4d4f23a4d0e93c1a739ea7c/TranslationsTool.py
|
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if Numeric.alltrue(Numeric.fabs(test-ref) <= threshold_byte):
|
ary = Numeric.fabs(test - ref) if Numeric.alltrue(ary <= threshold_byte):
|
def warp_4(): gdaltest.tiff_drv = gdal.GetDriverByName( 'GTiff' ) if gdaltest.tiff_drv is None: return 'skip' test = gdalnumeric.LoadFile( 'data/utmsmall_cubicspline.vrt' ) ref = gdalnumeric.LoadFile( 'data/utmsmall_cubicspline.tiff' ) if Numeric.alltrue(Numeric.fabs(test-ref) <= threshold_byte): return 'success' else: return 'fail'
|
c0a83b8cb1446b92392a54c791147b49b3bbe70a /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/10289/c0a83b8cb1446b92392a54c791147b49b3bbe70a/warp.py
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if cn.nodeName in mg_tags:
|
if ModelGroup.IsGroupMemberNode(cn):
|
def CreateFromDOM (cls, wxs, node, owner=None): """Create a Model Group Definition from a DOM element node.
|
25939b2ff98f2edd2f1dc9410de2d46bf5d6cdce /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/7171/25939b2ff98f2edd2f1dc9410de2d46bf5d6cdce/structures.py
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self.__bad_macro_chars = re.compile(r'[-_]')
|
self.__bad_macro_chars = re.compile(r'[-]')
|
def __init__(self, job): """ job = the CondorJob that this node corresponds to. """ if not isinstance(job, CondorDAGJob): raise CondorDAGNodeError, "A DAG node must correspond to a Condor DAG job" self.__name = None self.__job = job self.__vars = {} self.__retry = 0 self.__parents = [] self.__bad_macro_chars = re.compile(r'[-_]') self.set_name()
|
43ad3bfe54a06486dd70add90f5eb657d1f9038a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3589/43ad3bfe54a06486dd70add90f5eb657d1f9038a/pipeline.py
|
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self.task_modelsort.foreach(self.update_collapsed_row, None)
|
def do_toggle_workview(self): #We have to be careful here to avoid a loop of signals #menu_state = self.menu_view_workview.get_active() #button_state = self.toggle_workview.get_active() #We cannot have note and workview at the same time
|
1a7f1370f28f3e5b66447a7ed5fb6581efceb629 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/8234/1a7f1370f28f3e5b66447a7ed5fb6581efceb629/browser.py
|
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|
print "***D"
|
def __init__(self, mainhandler, name, connects=[]): if (mainhandler.domains.has_key(name)): print "***D" raise InvalidDomainError("Domain name already exists") self.name = name self.mainhandler = mainhandler self.ui = mainhandler.ui self.entities = { } self.mcs = { }
|
9a494271213765e6cd1c2cecaa81860143e9e82a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3867/9a494271213765e6cd1c2cecaa81860143e9e82a/_domain.py
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(?P<footnotelabel>
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def parse(self, text, lineno, memo, parent): """ Return 2 lists: nodes (text and inline elements), and system_messages.
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4 = x_0 - 3x_1 - 11x_3 - 8x_4 8 = x_1 - 2x_4 - 10x_3
|
4 = x_0 - 3x_0 - 11x_3 - 8x_4 8 = x_1 - 2x_1 - 10x_3
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def GetLinearEquations(state_space_at_current_level,sigma, level): """ Output a constant vector (made up of kappa_ij 's), and a dimension*dimension matrix each row of which composes of coefficients of the unknown (which in this case is P(F|z) Input Parameters ----------------- state_space_at_current_level A list containing all the states (4-tuples) at the current level (e.g. level 5), really generated by the GetCondJumpChainState(level) method See comments in MakeTransitionMatrixForLevel for more details. level the current level Details -------- Get the necessary ingredients about the systems of equations to plug into the LinearEquationSolver The systems of equations are: for all z in Z_k, P(F|z) = sum_{w in M} P(w|z)*P(F|w(z)) + P(k_ij | z) where P(F|z) and P(F|w(z) are unknowns (could be different or same), and P(k_ij | z) and P(w|z) are knowns Now, by our CONSTRUCTION (more like assumption), ("m_1", "m_2", "s_b_arrow_t") are DISJOINT SETS in conditional probability cases, we have, after rearranging terms: P(k_ij | z) = P(F|z) - sum_{w in M} P(w|z) * P(F|w(z)) for all z in Z_k = P(F|z) - P("m_1"|z)*P(F|m_1(z)) - P("m_2"|z)*P(F|m_2(z)) - P("s_b_arrow_t"|z)*P(F|"s_b_arrow_t"(z)) There are 4(k-1) such z's, because w(z) WILL be inside M by our construction, and if it's not, we simply ignore it in our computation (b/c we would get (-1,-1,-1,-1) if it's not in the current state or an invalid state from ApplyEvent()). And when m(z) is undefined, we would treat P(w|z) as 0 So we can create a 4(k-1) by 4(k-1) matrix called A, filled with coefficients of various P(F|z)'s in each row. How do we fill out matrix A? For instance, suppose there are 5 equations of the following format x_0 = 4 + 3x_1 + 11x_3 + 8x_4 x_1 = 8 + 2x_4 + 10x_3 x_2 = 17 x_3 = 25 + 3x_1 + 12x_3 + 22x_2 x_4 = 0 + 3x_3 Rearranging, we get: 4 = x_0 - 3x_1 - 11x_3 - 8x_4 8 = x_1 - 2x_4 - 10x_3 17 = x_2 25 = x_3 - 3x_1 - 12x_0 - 22x_2 0 = x_4 - 3x_3 We want to eventually turn it into the form that: [4,8,17,25,0].transpose() = [[1, -3, 0, -11, -8], * [x_0,x_1,x_2,x_3,x_4].transpose [0, 1, 0, -10, -2], [0, 0, 1, 0, 0], [-12, -3, -22, 1, 0], [0, 0, 0, -3, 1]] We call the LHS b, and the 5x5 matrix A, we would output (A, b) Output value ------------- Return (A,b) where A is a level_number*level_number matrix, and b is a constant vector """ length = len(state_space_at_current_level) constant_vector = [UnconditionalTransitionProbability("kappa",z,sigma) for z in state_space_at_current_level] #when level_number=2, #we have state_space_at_current_level = [(2, 0, 0, 0), (1, 1, 0, 1), (0, 2, 1, 1), (1, 1, 1, 0)] #and constant_vector = [1.0, 0.00049975012493753122, 0.058823846204939162, 0.00049975012493753122] #First create a level by level matrix with diagonal #initialized to 1's and rest 0's Fill in the diagonals with 1's #We really want the coefficients to be ints. matrix = eye(length,length, dtype=float) #Fill in the coefficient P("m_1"|z) into cell matrix[index of z][index of w(z)] #First, create a Probability of w given Z vector prob_m1_vector = [-UnconditionalTransitionProbability("m_1", z, sigma) for z in state_space_at_current_level] prob_m2_vector = [-UnconditionalTransitionProbability("m_2", z, sigma) for z in state_space_at_current_level] prob_s_b_arrow_t_vector = [-UnconditionalTransitionProbability("smaller_s_b_arrow_t", z, sigma) for z in state_space_at_current_level] #print "prob_m1_vector is: " + str(prob_m1_vector) #print "prob_m2_vector is: " + str(prob_m2_vector) #print "prob_s_b_arrow_t_vector is: " + str(prob_s_b_arrow_t_vector) #For instance, when level=2, prob_s_b_arrow_t is #[0.0, 0.99950024987506236, 0.94117615379506092, 0.99950024987506236] #Remember prob_w_given_z_vector does not depend on (x_1,x_2) #This way, prob_w_given_z[3] refers to the probability of #w_given_z_vector for the third element in state_space_at_current_level, #or really state_space_at_current_level[2] m1_vector = [ApplyEvent(z,"m_1",level) for z in state_space_at_current_level] m2_vector = [ApplyEvent(z,"m_2",level) for z in state_space_at_current_level] s_b_arrow_t_vector = [ApplyEvent(z,"smaller_s_b_arrow_t",level) for z in state_space_at_current_level] #print m1_vector #print m2_vector #print s_b_arrow_t_vector #For instance, the following code #state_space_at_current_level = GetCondJumpChainStateSpace(2) #print state_space_at_current_level #s_b_arrow_t_vector = [ApplyEvent(z,"s_b_arrow_t") for z in state_space_at_current_level] #generates: #state_space_at_current_level = [(2, 0, 0, 0), (1, 1, 0, 1), (0, 2, 1, 1), (1, 1, 1, 0)] #s_b_arrow_t_vector = [(-1, -1, -1, -1), (2, 0, 0, 1), (1, 1, -1, -1), (2, 0, 1, 0)] #So s_b_arrow_t_vector is an "ordered" list of the w(z)'s. level_number = length/4 + 1 state_to_index_map = MakeState2IndexDictionary(level_number) #print "state_to_index_map[(1,2,0,1)] is: " + str(state_to_index_map[x]) assert(length == len(state_space_at_current_level) == len(prob_m1_vector) == len(m1_vector)) for row in range(length): #for each row in the matrix, only fill in 3 numbers #So this implementation is faster than going through the #entire matrix if (m1_vector[row]!=(-1,-1,-1,-1)): #Otherwise, keep it 0 index_of_m1 = state_to_index_map[m1_vector[row]] matrix[row,index_of_m1] = prob_m1_vector[row] if (m2_vector[row]!=(-1,-1,-1,-1)): #Otherwise, keep it 0 index_of_m2 = state_to_index_map[m2_vector[row]] matrix[row,index_of_m2] = prob_m2_vector[row] if (s_b_arrow_t_vector[row]!=(-1,-1,-1,-1)): #Otherwise, keep it 0 index_of_s_b_arrow_t = state_to_index_map[s_b_arrow_t_vector[row]] matrix[row,index_of_s_b_arrow_t] = prob_s_b_arrow_t_vector[row] return (matrix, constant_vector)
|
7faf202b1836f91fc50c86fe3b92f5a5d79dc08b /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/7945/7faf202b1836f91fc50c86fe3b92f5a5d79dc08b/cjumpchain.py
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startup_notes + ( notes and notes or [] ),
|
root_notes,
|
def json( string ): return escape( unicode( Json( string ) ), quote = True )
|
ae92e04e8367ea967da3b71554544d183dd542df /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/6754/ae92e04e8367ea967da3b71554544d183dd542df/Main_page.py
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this = apply(_quickfix.new_QuoteRespID, args)
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this = _quickfix.new_QuoteRespID(*args)
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def __init__(self, *args): this = apply(_quickfix.new_QuoteRespID, args) try: self.this.append(this) except: self.this = this
|
7e632099fd421880c8c65fb0cf610d338d115ee9 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8819/7e632099fd421880c8c65fb0cf610d338d115ee9/quickfix.py
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def _check_mathieu_modcem2(self):
|
def check_mathieu_modcem2(self):
|
def _check_mathieu_modcem2(self): cephes.mathieu_modcem2(1,1,1)
|
2a0571808f9b68627e9152f6f1037281e69d9d98 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12971/2a0571808f9b68627e9152f6f1037281e69d9d98/test_cephes.py
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def insertElement(self, name, attributes): element = self.createElement(name, attributes) if (not(self.insertFromTable) or (self.insertFromTable and self.openElements[-1].name not in tableInsertModeElements)): self.openElements[-1].appendChild(element) self.openElements.append(element) else: #We should be in the InTable mode. This means we want to do #special magic element rearranging self.insertMisnestedNodeFromTable(element) self.openElements.append(element) return element
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6ebfd25148cae79629247c487e7dc2bdeeb84818 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/4487/6ebfd25148cae79629247c487e7dc2bdeeb84818/parser.py
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graph.createProjectionAsNumericArray(indices, useAnchorData = 1)
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graph.createProjectionAsNumericArray(indices, useAnchorData = 1, removeMissingData = 0, validData = validData, jitterSize = -1)
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def __init__(self, data, freeviz): self.FreeViz = freeviz
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360c2f29c8c0ca88d1a1b17243997c2bb35e7808 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/6366/360c2f29c8c0ca88d1a1b17243997c2bb35e7808/orngLinProj.py
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def svnAdd(location, all=False): client = pysvn.Client() dirname, fname = path.split(location) svnAdds = [location] while dirname!=null : if isKnownSVNFile(dirname): if all: client.add(svnAdds.pop()) else: svnAdds.reverse() client.add(svnAdds, recurse=false); return svnAdds.append(dirname) dirname, fname = path.split(dirname) return
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for j in range(len(cls[i])):
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added = 0 while cls[i] != [] and added == 0:
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def evaluateAttributes(data, contMeasure, discMeasure): attrs = []; contAttrs = [] corr = MeasureCorrelation() for attr in data.domain.attributes: if data.domain.classVar.varType == orange.VarTypes.Continuous and attr.varType == orange.VarTypes.Continuous: attrs.append((corr(attr.name, data), attr.name)) elif data.domain.classVar.varType == orange.VarTypes.Continuous: attrs.append((0.1, attr.name)) elif discMeasure == None and attr.varType == orange.VarTypes.Discrete: attrs.append((0.1, attr.name)) elif contMeasure == None and attr.varType == orange.VarTypes.Continuous: attrs.append((0.1, attr.name)) elif attr.varType == orange.VarTypes.Continuous: if not isinstance(contMeasure, S2NMeasureMix): attrs.append((contMeasure(attr.name, data), attr.name)) else: contAttrs.append(attr.name) else: attrs.append((discMeasure(attr.name, data), attr.name)) attrs.sort() attrs.reverse() attrs2 = [] if isinstance(contMeasure, S2NMeasureMix) and contAttrs != []: cls = [] for c in data.domain.classVar.values: # for each class value compute how good is each attribute for discriminating this class value against all other v = [] data2 = mergeClassValues(data, c) for attr in contAttrs: v.append((contMeasure(attr, data2), attr)) v.sort() #v.reverse() cls.append(v) while len(attrs2) < len(contAttrs): for i in range(len(data.domain.classVar.values)): for j in range(len(cls[i])): (v,attr) = cls[i].pop() if attr not in attrs2: attrs2.append(attr) break #return attrs return [attr for (val, attr) in attrs] + attrs2 # return only the ordered list of attributes and not also their values
|
be37a84b85277ea706046947cbb2b31f9864c7d7 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/6366/be37a84b85277ea706046947cbb2b31f9864c7d7/OWVisAttrSelection.py
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fmt = _(u"%(index)3d. %(em)s%(person)s%(/em)s removed this item from the %(em)sCalendar%(/em)s")
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fmt = _(u"%(conflictNumber)3d. %(user)s removed this item from the <emphasis>Calendar</emphasis>")
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def __init__(self, frame, conflicts, callback): self.conflicts = conflicts self.acceptButtons = list() self.discardButtons = list() self.textControls = list() self.callback = callback
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2e25d8e497965606c80971d25c22cfc5478fdf17 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9228/2e25d8e497965606c80971d25c22cfc5478fdf17/ConflictDialog.py
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'action': 'base_view',
|
'action': 'string:${object_url}/base_view',
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def getCMFVersion(): from os.path import join from Globals import package_home from Products.CMFCore import cmfcore_globals
|
fddba000165158aa0c6df6b9e406843fecae48f2 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12165/fddba000165158aa0c6df6b9e406843fecae48f2/ArchetypeTool.py
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self.sock = _ssl_wrap_socket(self.sock, self.cert_file, self.key_file)
|
self.sock = _ssl_wrap_socket(self.sock, self.key_file, self.cert_file)
|
def connect(self): if self.realhostport: # use CONNECT proxy self.sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) self.sock.connect((self.host, self.port)) if _generic_proxytunnel(self): self.sock = _ssl_wrap_socket(self.sock, self.cert_file, self.key_file) else: BetterHTTPS.connect(self)
|
b9df894f327937920e415249ccf8a4dd39d7318a /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11312/b9df894f327937920e415249ccf8a4dd39d7318a/url.py
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if os.path.exists(csPath):
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dataPath = csPath + '.data' if os.path.exists(csPath) and os.path.exists(dataPath):
|
def _addToCache(fingerPrint, inF, csVersion, returnVal, size): csPath = self.csCache.hashToPath(fingerPrint + '-%d' % csVersion) csDir = os.path.dirname(csPath) util.mkdirChain(csDir) (fd, csTmpPath) = tempfile.mkstemp(dir = csDir, suffix = '.ccs-new') outF = os.fdopen(fd, "w") util.copyfileobj(inF, outF) inF.close() # closes the underlying fd opened by mkstemp outF.close()
|
b86998432fc72ca61ee53a9f48b520c47a927c6f /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/8747/b86998432fc72ca61ee53a9f48b520c47a927c6f/proxy.py
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methods.append(value)
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methods.append((key, value))
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def docclass(self, object, funcs={}, classes={}): """Produce HTML documentation for a class object.""" name = object.__name__ bases = object.__bases__ contents = ''
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2c3f3ddf9452a1f3f228e0d8c7abdbeed214a6b7 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/3187/2c3f3ddf9452a1f3f228e0d8c7abdbeed214a6b7/pydoc.py
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stream.recordfile.write(message)
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stream.recordfile.write(m)
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def mediahandler(self, stream, message): '''Handle incoming media on the stream, by sending to other stream in this application instance.''' if stream.client is not None: inst = self.clients[stream.client.path][0] result = inst.onPublishData(stream.client, stream, message) if result: client = stream.client for s in (inst.players.get(stream.name, [])): # if _debug: print 'D', stream.name, s.name result = inst.onPlayData(s.client, s, message) if result: yield s.send(message) if stream.recordfile is not None: stream.recordfile.write(message)
|
d95dc1846e40cafcad7e207f1460dc58842890d1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/10498/d95dc1846e40cafcad7e207f1460dc58842890d1/rtmp.py
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if not isinstance(formatted_traceback, unicode): formatted_traceback = formatted_traceback.decode(preferred_encoding, 'replace') msg += formatted_traceback + '</pre>' msg += '<p><b>Log:</b></p><pre>' if log: msg += log.encode('utf8', 'ignore') if isinstance(log, unicode) else log.decode('utf8', 'ignore')
|
msg += formatted_traceback + u'</pre>' msg += u'<p><b>Log:</b></p><pre>' msg += log
|
def conversion_job_exception(self, id, description, exception, formatted_traceback, log): try: print >>sys.stderr, 'Error in job:', description.encode('utf8') if log: print >>sys.stderr, log.encode('utf8', 'ignore') if isinstance(log, unicode) else log print >>sys.stderr, exception print >>sys.stderr, formatted_traceback.encode('utf8', 'ignore') if isinstance(formatted_traceback, unicode) else formatted_traceback except: pass if getattr(exception, 'only_msg', False): error_dialog(self, _('Conversion Error'), unicode(exception)).exec_() return try: msg = u'<p><b>%s</b>:'%exception except: msg = u'<p><b>%s</b>: %s'%exception msg += u'<p>Failed to perform <b>job</b>: '+description msg += u'<p>Detailed <b>traceback</b>:<pre>' if not isinstance(formatted_traceback, unicode): formatted_traceback = formatted_traceback.decode(preferred_encoding, 'replace') msg += formatted_traceback + '</pre>' msg += '<p><b>Log:</b></p><pre>' if log: msg += log.encode('utf8', 'ignore') if isinstance(log, unicode) else log.decode('utf8', 'ignore') ConversionErrorDialog(self, 'Conversion Error', msg, show=True)
|
8f2800d3017989418bba4e2d8db31321d3a4c0c5 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9125/8f2800d3017989418bba4e2d8db31321d3a4c0c5/main.py
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'nfs_server', 'nfs_dir', 'pxe_dir', 'pxe_image', 'pxe_initrd', 'install_virtio', 'tftp', 'floppy', 'cdrom_unattended']
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'nfs_server', 'nfs_dir', 'install_virtio', 'floppy', 'cdrom_unattended', 'boot_path', 'extra_params']
|
def __init__(self): """ Gets params from environment variables and sets class attributes. """ images_dir = os.path.join(KVM_TEST_DIR, 'images') self.deps_dir = os.path.join(KVM_TEST_DIR, 'deps') self.unattended_dir = os.path.join(KVM_TEST_DIR, 'unattended')
|
295f8a35ea41100c5c7582c4a6b666d666dbf25a /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/12268/295f8a35ea41100c5c7582c4a6b666d666dbf25a/unattended.py
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def handle_read(self): blob=self.recv() if blob is None: pass elif blob=='': self.handle_close() else: self.buffer = self.buffer + blob
|
def handle_read(self): self.rc = self.rc + 1 if self.peer is None: self.peer = self.get_peer_cert() if self.peer is not None: print 'rc =', self.rc print self.peer.get_subject() try: blob=self.recv() if blob is None: pass elif blob == '': self.handle_close() else: self.buffer = self.buffer + blob except: self.close()
|
def handle_read(self): blob=self.recv() if blob is None: pass elif blob=='': self.handle_close() else: self.buffer = self.buffer + blob
|
2d0557876cb42157a58a49bde92eca30bdbd803e /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8055/2d0557876cb42157a58a49bde92eca30bdbd803e/echod-async.py
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def ExecuteSQL( self, statement, region = None, dialect = "" ): l_obj = _gdal.OGR_DS_ExecuteSQL( self._o, statement, region, dialect ) if l_obj is not None: return Layer( l_obj ) else: return None
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3168cde22e4a9933a110dc046a57cda148cf2a16 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/10290/3168cde22e4a9933a110dc046a57cda148cf2a16/ogr.py
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if self.command and self.command.hasValidStructure(): strandList = [] strandList = self.command.struct.getStrands() params = len(strandList)
|
part = self.command.assy.part nanotubes = part.get_topmost_subnodes_of_class(self.command.assy.NanotubeSegment) params = len(nanotubes)
|
def _currentStructureParams_NOT_APPLICABLE(self): """ Return current structure parameters of interest to self.model_changed. Right now it only returns the number of strands within the structure (or None). This is a good enough check (and no need to compare each and every strand within the structure with a previously stored set of strands). """ #Can it happen that the total number of strands remains the same even #after some alterations to the strands? Unlikely. (Example: a single #Break strands operation will increase the number of strands by one. #Or Join strands decrease it by 1) params = None if self.command and self.command.hasValidStructure(): strandList = [] strandList = self.command.struct.getStrands() params = len(strandList) return params
|
1235b6715ff62eb812d26f2083809e1d3b430cb8 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/11221/1235b6715ff62eb812d26f2083809e1d3b430cb8/BuildNanotube_PropertyManager.py
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self.openElements[-1].appendChild(clone) self.openElements.append(clone) self.activeFormattingElements[i] = clone if clone == self.activeFormattingElements[-1]:
|
element = self.insertElement(clone.name, clone.attributes) self.activeFormattingElements[i] = element if element == self.activeFormattingElements[-1]:
|
def reconstructActiveFormattingElements(self): # This covers the ", if any" case mentioned often in the drafts, before # you have to reconstruct the active formatting elements. if not self.activeFormattingElements: return
|
011e7f06fa21cd26114ee13532f1307d83fc7818 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/10463/011e7f06fa21cd26114ee13532f1307d83fc7818/parser.py
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cur.execute('insert into booze values (:1)',("Cooper's",))
|
cur.execute( 'insert into %sbooze values (:1)' % self.table_prefix, ("Cooper's",) )
|
def _paraminsert(self,cur): self.executeDDL1(cur) cur.execute("insert into booze values ('Victoria Bitter')") self.failUnless(cur.rowcount in (-1,1))
|
cfcc2c93bb2f3afff81cb651f606e164b84e739d /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/7955/cfcc2c93bb2f3afff81cb651f606e164b84e739d/dbapi20.py
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static xmlValidCtxtPtr gen_xmlValidCtxtPtr(int no) {
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static xmlValidCtxtPtr gen_xmlValidCtxtPtr(int no, int nr ATTRIBUTE_UNUSED) {
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def is_known_param_type(name): for type in known_param_types: if type == name: return 1 return 0
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3d97e669eca6f4849c7b3014f472cacc57817015 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12659/3d97e669eca6f4849c7b3014f472cacc57817015/gentest.py
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def ndpointer(datatype=None, ndim=None, shape=None, flags=None): if datatype is not None: datatype = dtype(datatype)
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def ndpointer(dtype=None, ndim=None, shape=None, flags=None): if dtype is not None: dtype = _dtype(dtype)
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def ndpointer(datatype=None, ndim=None, shape=None, flags=None): if datatype is not None: datatype = dtype(datatype) num = None if flags is not None: if isinstance(flags, str): flags = flags.split(',') elif isinstance(flags, (int, integer)): num = flags flags = _flags_fromnum(flags) if num is None: flags = [x.strip().upper() for x in flags] num = _num_fromflags(flags) try: return _pointer_type_cache[(datatype, ndim, shape, num)] except KeyError: pass if datatype is None: name = 'any' elif datatype.names: name = str(id(datatype)) else: name = datatype.str if ndim is not None: name += "_%dd" % ndim if shape is not None: try: strshape = [str(x) for x in shape] except TypeError: strshape = [str(shape)] shape = (shape,) shape = tuple(shape) name += "_"+"x".join(strshape) if flags is not None: name += "_"+"_".join(flags) else: flags = [] klass = type("ndpointer_%s"%name, (_ndptr,), {"_dtype_": datatype, "_shape_" : shape, "_ndim_" : ndim, "_flags_" : num}) _pointer_type_cache[datatype] = klass return klass
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7aa30aee6bae9a2c28539b06331225efbd3f5370 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/14925/7aa30aee6bae9a2c28539b06331225efbd3f5370/utils.py
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"<div padding=6 id='div-interact-3'> ...</div>\n "
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"<!--notruncate--><div padding=6 id='div-interact-3'> ...</div>\n "
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def wrap_in_outside_frame(self, inside): """ Return the entire HTML for the interactive canvas, obtained by wrapping all the inside html of the canvas in a div and a table.
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9e366083336fb9b8019771087639e77b994a18f5 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/9890/9e366083336fb9b8019771087639e77b994a18f5/interact.py
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"line" : node.get("line"),
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"line" : node.get("line"),
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def _addTranslationBlock(self, method, data, node, var): entry = { "method" : method, "line" : node.get("line"), "column" : node.get("column") }
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ee807d2763090dbf13e7caa178f7ce2c8405e637 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/5718/ee807d2763090dbf13e7caa178f7ce2c8405e637/Locale.py
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if resp[:3] not in ('426', '226'):
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if resp[:3] not in ('426', '225', '226'):
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def abort(self): '''Abort a file transfer. Uses out-of-band data. This does not follow the procedure from the RFC to send Telnet IP and Synch; that doesn't seem to work with the servers I've tried. Instead, just send the ABOR command as OOB data.''' line = 'ABOR' + CRLF if self.debugging > 1: print '*put urgent*', self.sanitize(line) self.sock.sendall(line, MSG_OOB) resp = self.getmultiline() if resp[:3] not in ('426', '226'): raise error_proto, resp
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cf445fced474f4df3b67ec3cb4ae6f761173d93c /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/8546/cf445fced474f4df3b67ec3cb4ae6f761173d93c/ftplib.py
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symmetry_flags = symmetry_flags)
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symmetry_flags = symmetry_flags, fmodel = self)
|
def fft_map(resolution_factor = None, symmetry_flags = None, map_coefficients = None, other_fft_map = None): if(resolution_factor is None): resolution_factor = self.resolution_factor if(symmetry_flags is None): symmetry_flags = self.symmetry_flags return map_coefficients.fft_map( resolution_factor = resolution_factor, symmetry_flags = symmetry_flags)
|
bfcf922c5cf8839b7c038240ba50c763b3658b81 /local1/tlutelli/issta_data/temp/all_python//python/2008_temp/2008/696/bfcf922c5cf8839b7c038240ba50c763b3658b81/twin_f_model.py
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def keyNumberGlobal(self, number): print "You pressed number " + str(number) if (self["config"].getCurrent()[1].parent.enabled == True): self["config"].handleKey(config.key[str(number)])
|
config.timerentry.service = configElement_nonSave("config.timerentry.service", configSelection, 0, ((str(self.timer.service_ref.getServiceName())),))
|
def keyNumberGlobal(self, number): print "You pressed number " + str(number) if (self["config"].getCurrent()[1].parent.enabled == True): self["config"].handleKey(config.key[str(number)])
|
aceb62aeebc259a4da520b303a31a6a174d9400a /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/6652/aceb62aeebc259a4da520b303a31a6a174d9400a/TimerEntry.py
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'''
|
"""
|
def field(self, **kwargs): ''' Render the property as a field in HTML.
|
16a3ebf380b95607b344181655488d818a27791f /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/1906/16a3ebf380b95607b344181655488d818a27791f/templating.py
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sage: q = PowerSeriesRing(QQ,'q').gen() sage: prod((1-q^k)^(-1) for k in range(1,20)) 1 + q + 2*q^2 + 3*q^3 + 5*q^4 + 7*q^5 + 11*q^6 + 15*q^7 + 22*q^8 + 30*q^9 + 42*q^10 + 56*q^11 + 77*q^12 + 101*q^13 + 135*q^14 + 176*q^15 + 231*q^16 + 297*q^17 + 385*q^18 + 490*q^19 + O(q^20)
|
sage: q = PowerSeriesRing(QQ, 'q', default_prec=9).gen() sage: prod([(1-q^k)^(-1) for k in range(1,9)]) 1 + q + 2*q^2 + 3*q^3 + 5*q^4 + 7*q^5 + 11*q^6 + 15*q^7 + 22*q^8 + O(q^9)
|
def number_of_partitions_list(n,k=None): r""" Returns the size of partitions_list(n,k). Wraps GAP's NrPartitions. It is possible to associate with every partition of the integer n a conjugacy class of permutations in the symmetric group on n points and vice versa. Therefore p(n) = NrPartitions(n) is the number of conjugacy classes of the symmetric group on n points. \code{number_of_partitions(n)} is also available in PARI, however the speed seems the same until $n$ is in the thousands (in which case PARI is faster). EXAMPLES: sage: number_of_partitions_list(10,2) 5 sage: number_of_partitions_list(10) 42 A generating function for p(n) is given by the reciprocal of Euler's function: \[ \sum_{n=0}^\infty p(n)x^n = \prod_{k=1}^\infty \left(\frac {1}{1-x^k} \right). \] SAGE verifies that the first several coefficients do instead agree: sage: q = PowerSeriesRing(QQ,'q').gen() sage: prod((1-q^k)^(-1) for k in range(1,20)) ## partial product of 1 + q + 2*q^2 + 3*q^3 + 5*q^4 + 7*q^5 + 11*q^6 + 15*q^7 + 22*q^8 + 30*q^9 + 42*q^10 + 56*q^11 + 77*q^12 + 101*q^13 + 135*q^14 + 176*q^15 + 231*q^16 + 297*q^17 + 385*q^18 + 490*q^19 + O(q^20) sage: [number_of_partitions_list(k) for k in range(2,10)] [2, 3, 5, 7, 11, 15, 22, 30] REFERENCES: http://en.wikipedia.org/wiki/Partition_%28number_theory%29 """ if k==None: ans=gap.eval("NrPartitions(%s)"%(ZZ(n))) else: ans=gap.eval("NrPartitions(%s,%s)"%(ZZ(n),ZZ(k))) return ZZ(ans)
|
602ed066a71fa2add0f925373cff3d945f705457 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9890/602ed066a71fa2add0f925373cff3d945f705457/combinat.py
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-b/(a*(a*b - (b/a)))
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-b/(a*(a*b - b/a))
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def _repr_(self, simplify=True): """ TESTS: sage: a = (1-1/r)^(-1); a 1/(1 - (1/r)) sage: a.derivative(r) -1/((1 - (1/r))^2*r^2)
|
b3ba17c1357de84983fbf0c3d95f1ba232a95810 /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9890/b3ba17c1357de84983fbf0c3d95f1ba232a95810/calculus.py
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[ "-IUUID", "-IRevDateStr", svndmp, pydmp2 ] )
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[ svndmp, pydmp2 ] )
|
def test_dumps( params ): """Test 1: Test creating dumps.""" # get params tempdir = params["tempdir"] tempfiles = params["tempfiles"] temprepos = params["temprepos"] tempwc = params["tempwc"] # test1: create a dump with commandline and python classes then compare svndmp = tempdir + "/test_dumps_svn" pydmp = tempdir + "/test_dumps_py1" pydmp2 = tempdir + "/test_dumps_py2" # create with cmdline svn_create_dump_file( svndmp, "test1", data_test1, temprepos, tempwc ) # create with python py_create_dump_file( pydmp, "test1", data_test1, tempfiles ) # copy the one created with cmdline svndump.copy_dump_file( svndmp, pydmp2 ) # compare svndmp and pydmp2 rc = run( "diff -u '%s' '%s'" % ( svndmp, pydmp2 ) ) add_test_result( params, "test_dumps", "gnu diff svndmp pydmp2", rc ) if rc != 0: print "diffs found :(" return 1 rc = svndump_diff_cmdline( "svndumptest.py", [ "-IUUID", "-IRevDateStr", svndmp, pydmp2 ] ) add_test_result( params, "test_dumps", "diff svndmp pydmp2", rc ) if rc != 0: print "diffs found :(" return 1 # compare svndmp and pydmp rc = svndump_diff_cmdline( "svndumptest.py", [ "-IUUID", "-IRevDateStr", svndmp, pydmp ] ) add_test_result( params, "test_dumps", "diff svndmp pydmp", rc ) if rc != 0: print "diffs found :(" return 1 # done. return 0
|
ea426dfb93d645bcd795a74b9f5557fd11fb9429 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/13212/ea426dfb93d645bcd795a74b9f5557fd11fb9429/svndumptest.py
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self.clearPath() re = compile('.+?;') tmp = re.findall(config.radio.lastroot.value) cnt = 0 for i in tmp: self.servicePathRadio.append(eServiceReference(i[:-1])) cnt += 1 if cnt: path = self.servicePathRadio.pop() self.enterPath(path) else: self.showFavourites() self.saveRoot()
|
tmp = [x for x in self.lastroot.value.split(';') if x != ''] current = [x.toString() for x in self.servicePath] if tmp != current or self.rootChanged: cnt = 0 for i in tmp: self.servicePathRadio.append(eServiceReference(i)) cnt += 1 if cnt: path = self.servicePathRadio.pop() self.enterPath(path) else: self.showFavourites() self.saveRoot() self.rootChanged = False
|
def restoreRoot(self): self.clearPath() re = compile('.+?;') tmp = re.findall(config.radio.lastroot.value) cnt = 0 for i in tmp: self.servicePathRadio.append(eServiceReference(i[:-1])) cnt += 1 if cnt: path = self.servicePathRadio.pop() self.enterPath(path) else: self.showFavourites() self.saveRoot()
|
a2a6f4401a59a912f39992a989576fc00542d6a5 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/6652/a2a6f4401a59a912f39992a989576fc00542d6a5/ChannelSelection.py
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word = urllib.unquote(word)
|
word = uunquote(word)
|
def runImport(dbFN, useDBM, newDBM, inFN): if newDBM: try: os.unlink(dbFN) except OSError, e: if e.errno != 2: # errno.<WHAT> raise try: os.unlink(dbFN+".dat") except OSError, e: if e.errno != 2: # errno.<WHAT> raise try: os.unlink(dbFN+".dir") except OSError, e: if e.errno != 2: # errno.<WHAT> raise if useDBM: bayes = spambayes.storage.DBDictClassifier(dbFN) else: bayes = spambayes.storage.PickledClassifier(dbFN) try: fp = open(inFN, 'r') except IOError, e: if e.errno != errno.ENOENT: raise nline = fp.readline() (nham, nspam, junk) = re.split(',', nline) if newDBM: bayes.nham = int(nham) bayes.nspam = int(nspam) else: bayes.nham += int(nham) bayes.nspam += int(nspam) if newDBM: impType = "Importing" else: impType = "Merging" print "%s database %s using file %s" % (impType, dbFN, inFN) lines = fp.readlines() for line in lines: (word, hamcount, spamcount, junk) = re.split('`', line) word = urllib.unquote(word) try: wi = bayes.wordinfo[word] except KeyError: wi = bayes.WordInfoClass() wi.hamcount += int(hamcount) wi.spamcount += int(spamcount) bayes._wordinfoset(word, wi) fp.close() print "Storing database, please be patient. Even moderately large" print "databases may take a very long time to store." bayes.store() print "Finished storing database" if useDBM: words = bayes.db.keys() words.remove(bayes.statekey) else: words = bayes.wordinfo.keys() print "Database has %s ham, %s spam, and %s words" \ % (bayes.nham, bayes.nspam, len(words))
|
3f6976fbf0f5600a27a7868fcd12480629c14470 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/9857/3f6976fbf0f5600a27a7868fcd12480629c14470/sb_dbexpimp.py
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self.factory, contextFactory)
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self.factory, cred)
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def connect(self): """ This methods establishes the conection to the remote server.
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b01496f2cd8f05bb79396a87e556ea7352fc425d /local1/tlutelli/issta_data/temp/all_python//python/2007_temp/2007/9417/b01496f2cd8f05bb79396a87e556ea7352fc425d/dsage_interface.py
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sty=m.make('sty',type='sty',xyz=pig_sty_xyz,status=1.0,bbox=[5,5,3])
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sty=m.make('sty',type='sty',xyz=pig_sty_xyz,status=1.0,bbox=[5,5,3],area={'points' : [ [0,0], [0,5], [5,5], [5,0] ], 'layer' : 5})
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#def dontrunme():
|
a95708014fbae9e8bbf06f3f34ca5e45fcd04850 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/12932/a95708014fbae9e8bbf06f3f34ca5e45fcd04850/define_world.py
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if self.debugging: print '*welcome*', `self.welcome`
|
if self.debugging: print '*welcome*', self.sanitize(self.welcome)
|
def getwelcome(self): if self.debugging: print '*welcome*', `self.welcome` return self.welcome
|
ebaf104665158f0dd215062b699e7f1a2b4580b7 /local1/tlutelli/issta_data/temp/all_python//python/2006_temp/2006/8546/ebaf104665158f0dd215062b699e7f1a2b4580b7/ftplib.py
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self.assert_(self.g.read(20, 5) == "22222")
|
self.assert_(self.g.read(20, 5) == "2") self.assert_(self.g.read(20, 1) == "2")
|
def runTest(self): # First try to read from a device that isn't open yet. self.assertRaises(_ped.IOException, self.g.read, 0, 10)
|
7cea44689161ba7044ed18844581da0ae56ffda9 /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/5978/7cea44689161ba7044ed18844581da0ae56ffda9/test_geometry.py
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"\n\n(Currently using %r)" ) % (version, e.args[0])
|
"\n\n(Currently using %r)") % (version, e.args[0])
|
def use_setuptools( version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=os.curdir, download_delay=15
|
9376c7db5895d2451fb358ccc8f545d1e5dc3f7a /local1/tlutelli/issta_data/temp/all_python//python/2009_temp/2009/8186/9376c7db5895d2451fb358ccc8f545d1e5dc3f7a/distribute_setup.py
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