JuIm/Biological_Process · Datasets at Hugging Face

text stringlengths 7 1.01k
ribosome biogenesis
fatty acid biosynthetic process
photosynthesis
photosynthetic electron transport in photosystem I
catabolic process
photosynthetic electron transport in photosystem II response to herbicide
photosynthetic electron transport in photosystem II response to herbicide
cell adhesion metal ion transport
phospholipid biosynthetic process
DNA repair nucleotide-excision repair nucleotide-excision repair, DNA damage recognition nucleotide-excision repair, preincision complex assembly response to radiation SOS response
acetate biosynthetic process acetate metabolic process acetyl-CoA biosynthetic process phosphorylation propionate biosynthetic process single-species biofilm formation on inanimate substrate
fatty acid biosynthetic process lipid A biosynthetic process lipid biosynthetic process response to xenobiotic stimulus
cell wall organization D-alanine biosynthetic process peptidoglycan biosynthetic process regulation of cell shape
cluster assembly detection of UV iron-sulfur cluster assembly L-cysteine catabolic process oxazole or thiazole biosynthetic process selenocysteine catabolic process sulfur compound transport thiamine biosynthetic process tRNA 4-thiouridine biosynthesis tRNA wobble position uridine thiolation
cluster assembly tRNA processing
base-excision repair DNA repair
arginine biosynthetic process arginine biosynthetic process via ornithine DNA damage response phosphorylation
arginine biosynthetic process negative regulation of DNA-templated transcription initiation plasmid recombination positive regulation of DNA-templated transcription initiation protein complex oligomerization regulation of arginine biosynthetic process regulation of arginine catabolic process
amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process
amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process phosphorylation response to antibiotic
amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process phosphorylation
arginine biosynthetic process argininosuccinate metabolic process urea cycle
proton motive force-driven ATP synthesis proton motive force-driven plasma membrane ATP synthesis
de novo' pyrimidine nucleobase biosynthetic process 'de novo' UMP biosynthetic process arginine biosynthetic process glutamine metabolic process pyrimidine nucleobase biosynthetic process
DNA damage response glycerol catabolic process glycerol metabolic process glycerol-3-phosphate metabolic process phosphorylation
chaperone cofactor-dependent protein refolding protein folding protein refolding response to heat response to radiation virion assembly
chaperone cofactor-dependent protein refolding protein folding response to heat virion assembly
positive regulation of programmed cell death proteasomal protein catabolic process protein quality control for misfolded or incompletely synthesized proteins proteolysis response to heat response to radiation response to temperature stimulus
cell division protein denaturation protein unfolding proteolysis involved in protein catabolic process
cellular response to heat protein denaturation protein unfolding proteolysis proteolysis involved in protein catabolic process response to heat
cardiolipin biosynthetic process
nucleobase-containing small molecule interconversion phosphorylation pyrimidine nucleotide metabolic process response to X-ray
coenzyme A biosynthetic process
cysteine biosynthetic process sulfate assimilation sulfate transmembrane transport
D-alanine catabolic process L-alanine oxidation to pyruvate via D-alanine
lysine biosynthetic process via diaminopimelate
co-translational protein modification translation
5-phosphoribose 1-diphosphate biosynthetic process cellular metabolic compound salvage deoxyribonucleotide catabolic process DNA damage response
carbohydrate catabolic process deoxyribonucleotide catabolic process deoxyribose phosphate catabolic process DNA damage response nucleobase-containing small molecule interconversion
diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate
carbohydrate metabolic process N-acetylneuraminate catabolic process single-species biofilm formation
aminoacyl-tRNA metabolism involved in translational fidelity D-amino acid catabolic process response to heat tRNA metabolic process
ribosome disassembly translational elongation
negative regulation of translational frameshifting rescue of stalled ribosome translational elongation
translational elongation
ribosome biogenesis
glycolytic process RNA catabolic process RNA processing
fatty acid biosynthetic process
fatty acid biosynthetic process lipid A biosynthetic process
fatty acid biosynthetic process fatty acid metabolic process
chromosome organization DNA-templated transcription positive regulation of DNA recombination provirus excision regulation of DNA-templated transcription response to radiation
cell division division septum assembly FtsZ-dependent cytokinesis
cellular response to oxidative stress gluconeogenesis glucose 6-phosphate metabolic process glycolytic process
galactose catabolic process via UDP-galactose galactose metabolic process
7,8-dihydroneopterin 3'-triphosphate biosynthetic process one-carbon metabolic process queuosine biosynthetic process tetrahydrobiopterin biosynthetic process tetrahydrofolate biosynthetic process
regulation of cytoplasmic translational fidelity response to UV tRNA methylation tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation tRNA wobble uridine modification
rRNA base methylation
glycogen biosynthetic process protein homotetramerization
cell cycle cell division cell wall macromolecule biosynthetic process cell wall organization peptidoglycan biosynthetic process regulation of cell shape
positive regulation of translation, ncRNA-mediated regulation of DNA-templated transcription regulation of RNA stability regulation of translation, ncRNA-mediated sRNA-mediated post-transcriptional gene silencing
DNA recombination DNA-templated transcription regulation of translation
DNA recombination DNA-templated transcription regulation of DNA-templated transcription regulation of translation
maintenance of unfolded protein protein refolding response to heat response to oxidative stress
cellular response to unfolded protein chaperone cofactor-dependent protein refolding DNA replication protein refolding protein unfolding protein-containing complex assembly response to heat stress response to copper ion
cellular response to cold chaperone cofactor-dependent protein refolding iron-sulfur cluster assembly protein maturation by iron-sulfur cluster transfer protein refolding
DNA damage response FtsZ-dependent cytokinesis protein folding response to heat
negative regulation of DNA-templated transcription initiation regulation of DNA-templated transcription response to nickel cation
protein maturation protein maturation by nickel ion transfer protein modification process protein-containing complex assembly
chaperone-mediated protein folding response to cold translational initiation
response to cold ribosome disassembly
gluconate transmembrane transport
keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
5-phosphoribose 1-diphosphate biosynthetic process phosphorylation protein hexamerization purine nucleotide biosynthetic process ribonucleoside monophosphate biosynthetic process
dTDP biosynthetic process dTTP biosynthetic process dUDP biosynthetic process nucleobase-containing small molecule interconversion phosphorylation
lipid A biosynthetic process
nucleotide metabolic process
methylglyoxal biosynthetic process protein hexamerization
Mo-molybdopterin cofactor biosynthetic process
monoatomic ion transmembrane transport monoatomic ion transport
cellular response to oxidative stress protein modification process protein repair response to oxidative stress
protein repair response to cadmium ion response to oxidative stress
cell cycle cell division cell wall organization peptidoglycan biosynthetic process regulation of cell shape UDP-N-acetylgalactosamine biosynthetic process
carbohydrate metabolic process glucosamine catabolic process N-acetylglucosamine catabolic process N-acetylneuraminate catabolic process UDP-N-acetylglucosamine biosynthetic process
CTP biosynthetic process GTP biosynthetic process phosphorylation purine nucleotide metabolic process pyrimidine nucleotide metabolic process UTP biosynthetic process
cadmium ion transport cellular response to iron ion cobalt ion transport iron ion transport manganese ion transport metal ion transport
mRNA catabolic process NAD-cap decapping RNA decapping RNA destabilization tRNA processing
RNA catabolic process
de novo' pyrimidine nucleobase biosynthetic process 'de novo' UMP biosynthetic process glutamine metabolic process protein homotrimerization
alanine biosynthetic process pantothenate biosynthetic process protein autoprocessing
pyridoxine biosynthetic process
canonical glycolysis fructose 1,6-bisphosphate metabolic process fructose 6-phosphate metabolic process glucose catabolic process glycolytic process protein homotetramerization
gluconeogenesis glycolytic process phosphorylation
CDP-diacylglycerol biosynthetic process fatty acid metabolic process phospholipid biosynthetic process
phosphate-containing compound metabolic process
phosphorylation polyphosphate biosynthetic process
NAD metabolic process NADP biosynthetic process phosphorylation
L-proline biosynthetic process phosphorylation proline biosynthetic process
cellular response to heat protein denaturation proteolysis proteolysis involved in protein catabolic process response to heat
DNA damage response DNA repair DNA replication DNA-templated transcription negative regulation of DNA-templated transcription proteolysis SOS response
de novo' AMP biosynthetic process adenosine biosynthetic process DNA damage response IMP metabolic process nucleobase-containing small molecule interconversion purine nucleotide biosynthetic process

ribosome biogenesis

fatty acid biosynthetic process

photosynthesis

photosynthetic electron transport in photosystem I

catabolic process

photosynthetic electron transport in photosystem II response to herbicide

cell adhesion metal ion transport

phospholipid biosynthetic process

DNA repair nucleotide-excision repair nucleotide-excision repair, DNA damage recognition nucleotide-excision repair, preincision complex assembly response to radiation SOS response

acetate biosynthetic process acetate metabolic process acetyl-CoA biosynthetic process phosphorylation propionate biosynthetic process single-species biofilm formation on inanimate substrate

fatty acid biosynthetic process lipid A biosynthetic process lipid biosynthetic process response to xenobiotic stimulus

cell wall organization D-alanine biosynthetic process peptidoglycan biosynthetic process regulation of cell shape

cluster assembly detection of UV iron-sulfur cluster assembly L-cysteine catabolic process oxazole or thiazole biosynthetic process selenocysteine catabolic process sulfur compound transport thiamine biosynthetic process tRNA 4-thiouridine biosynthesis tRNA wobble position uridine thiolation

cluster assembly tRNA processing

base-excision repair DNA repair

arginine biosynthetic process arginine biosynthetic process via ornithine DNA damage response phosphorylation

arginine biosynthetic process negative regulation of DNA-templated transcription initiation plasmid recombination positive regulation of DNA-templated transcription initiation protein complex oligomerization regulation of arginine biosynthetic process regulation of arginine catabolic process

amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process

amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process phosphorylation response to antibiotic

amino acid biosynthetic process aromatic amino acid family biosynthetic process chorismate biosynthetic process phosphorylation

arginine biosynthetic process argininosuccinate metabolic process urea cycle

proton motive force-driven ATP synthesis proton motive force-driven plasma membrane ATP synthesis

de novo' pyrimidine nucleobase biosynthetic process 'de novo' UMP biosynthetic process arginine biosynthetic process glutamine metabolic process pyrimidine nucleobase biosynthetic process

DNA damage response glycerol catabolic process glycerol metabolic process glycerol-3-phosphate metabolic process phosphorylation

chaperone cofactor-dependent protein refolding protein folding protein refolding response to heat response to radiation virion assembly

chaperone cofactor-dependent protein refolding protein folding response to heat virion assembly

positive regulation of programmed cell death proteasomal protein catabolic process protein quality control for misfolded or incompletely synthesized proteins proteolysis response to heat response to radiation response to temperature stimulus

cell division protein denaturation protein unfolding proteolysis involved in protein catabolic process

cellular response to heat protein denaturation protein unfolding proteolysis proteolysis involved in protein catabolic process response to heat

cardiolipin biosynthetic process

nucleobase-containing small molecule interconversion phosphorylation pyrimidine nucleotide metabolic process response to X-ray

coenzyme A biosynthetic process

cysteine biosynthetic process sulfate assimilation sulfate transmembrane transport

D-alanine catabolic process L-alanine oxidation to pyruvate via D-alanine

lysine biosynthetic process via diaminopimelate

co-translational protein modification translation

5-phosphoribose 1-diphosphate biosynthetic process cellular metabolic compound salvage deoxyribonucleotide catabolic process DNA damage response

carbohydrate catabolic process deoxyribonucleotide catabolic process deoxyribose phosphate catabolic process DNA damage response nucleobase-containing small molecule interconversion

diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate

carbohydrate metabolic process N-acetylneuraminate catabolic process single-species biofilm formation

aminoacyl-tRNA metabolism involved in translational fidelity D-amino acid catabolic process response to heat tRNA metabolic process

ribosome disassembly translational elongation

negative regulation of translational frameshifting rescue of stalled ribosome translational elongation

translational elongation

ribosome biogenesis

glycolytic process RNA catabolic process RNA processing

fatty acid biosynthetic process

fatty acid biosynthetic process lipid A biosynthetic process

fatty acid biosynthetic process fatty acid metabolic process

chromosome organization DNA-templated transcription positive regulation of DNA recombination provirus excision regulation of DNA-templated transcription response to radiation

cell division division septum assembly FtsZ-dependent cytokinesis

cellular response to oxidative stress gluconeogenesis glucose 6-phosphate metabolic process glycolytic process

galactose catabolic process via UDP-galactose galactose metabolic process

7,8-dihydroneopterin 3'-triphosphate biosynthetic process one-carbon metabolic process queuosine biosynthetic process tetrahydrobiopterin biosynthetic process tetrahydrofolate biosynthetic process

regulation of cytoplasmic translational fidelity response to UV tRNA methylation tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation tRNA wobble uridine modification

rRNA base methylation

glycogen biosynthetic process protein homotetramerization

cell cycle cell division cell wall macromolecule biosynthetic process cell wall organization peptidoglycan biosynthetic process regulation of cell shape

positive regulation of translation, ncRNA-mediated regulation of DNA-templated transcription regulation of RNA stability regulation of translation, ncRNA-mediated sRNA-mediated post-transcriptional gene silencing

DNA recombination DNA-templated transcription regulation of translation

DNA recombination DNA-templated transcription regulation of DNA-templated transcription regulation of translation

maintenance of unfolded protein protein refolding response to heat response to oxidative stress

cellular response to unfolded protein chaperone cofactor-dependent protein refolding DNA replication protein refolding protein unfolding protein-containing complex assembly response to heat stress response to copper ion

cellular response to cold chaperone cofactor-dependent protein refolding iron-sulfur cluster assembly protein maturation by iron-sulfur cluster transfer protein refolding

DNA damage response FtsZ-dependent cytokinesis protein folding response to heat

negative regulation of DNA-templated transcription initiation regulation of DNA-templated transcription response to nickel cation

protein maturation protein maturation by nickel ion transfer protein modification process protein-containing complex assembly

chaperone-mediated protein folding response to cold translational initiation

response to cold ribosome disassembly

gluconate transmembrane transport

keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

5-phosphoribose 1-diphosphate biosynthetic process phosphorylation protein hexamerization purine nucleotide biosynthetic process ribonucleoside monophosphate biosynthetic process

dTDP biosynthetic process dTTP biosynthetic process dUDP biosynthetic process nucleobase-containing small molecule interconversion phosphorylation

lipid A biosynthetic process

nucleotide metabolic process

methylglyoxal biosynthetic process protein hexamerization

Mo-molybdopterin cofactor biosynthetic process

monoatomic ion transmembrane transport monoatomic ion transport

cellular response to oxidative stress protein modification process protein repair response to oxidative stress

protein repair response to cadmium ion response to oxidative stress

cell cycle cell division cell wall organization peptidoglycan biosynthetic process regulation of cell shape UDP-N-acetylgalactosamine biosynthetic process

carbohydrate metabolic process glucosamine catabolic process N-acetylglucosamine catabolic process N-acetylneuraminate catabolic process UDP-N-acetylglucosamine biosynthetic process

CTP biosynthetic process GTP biosynthetic process phosphorylation purine nucleotide metabolic process pyrimidine nucleotide metabolic process UTP biosynthetic process

cadmium ion transport cellular response to iron ion cobalt ion transport iron ion transport manganese ion transport metal ion transport

mRNA catabolic process NAD-cap decapping RNA decapping RNA destabilization tRNA processing

RNA catabolic process

de novo' pyrimidine nucleobase biosynthetic process 'de novo' UMP biosynthetic process glutamine metabolic process protein homotrimerization

alanine biosynthetic process pantothenate biosynthetic process protein autoprocessing

pyridoxine biosynthetic process

canonical glycolysis fructose 1,6-bisphosphate metabolic process fructose 6-phosphate metabolic process glucose catabolic process glycolytic process protein homotetramerization

gluconeogenesis glycolytic process phosphorylation

CDP-diacylglycerol biosynthetic process fatty acid metabolic process phospholipid biosynthetic process

phosphate-containing compound metabolic process

phosphorylation polyphosphate biosynthetic process

NAD metabolic process NADP biosynthetic process phosphorylation

L-proline biosynthetic process phosphorylation proline biosynthetic process

cellular response to heat protein denaturation proteolysis proteolysis involved in protein catabolic process response to heat

DNA damage response DNA repair DNA replication DNA-templated transcription negative regulation of DNA-templated transcription proteolysis SOS response

de novo' AMP biosynthetic process adenosine biosynthetic process DNA damage response IMP metabolic process nucleobase-containing small molecule interconversion purine nucleotide biosynthetic process