Biological Process stringlengths 7 1.01k | Cellular Component stringlengths 6 867 | Molecular Function stringlengths 11 871 | Organism stringlengths 8 73 | Keywords stringlengths 1 810 | Sequence 10 stringlengths 5 10 | Sequence stringlengths 5 1.02k | Combined stringlengths 136 3.91k |
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glycolytic process | cytoplasm | ATP binding glucokinase activity glucose binding | Shigella flexneri | ATP-binding Cytoplasm Glycolysis Kinase Nucleotide-binding Reference proteome Transferase | MTKYALVGDV | MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDYPGLLGSGAHLRQTLGHI... | glycolytic process cytoplasm ATP binding glucokinase activity glucose binding Shigella flexneriATP-binding Cytoplasm Glycolysis Kinase Nucleotide-binding Reference proteome Transferase MTKYALVGDV MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEP... |
response to antibiotic | cell outer membrane | efflux transmembrane transporter activity | Shigella flexneri | Antibiotic resistance Cell outer membrane Lipoprotein Membrane Palmitate Reference proteome Signal Transmembrane Transmembrane beta strand | MNRDSFYPAI | MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKNGWPDSQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQDGPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNRAEVTARLGTVKARAAEREQTRQLLAGSVARLYWEWQTQAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVDGVETDINASKTRQQLNDVAGKMKIIEARLNALTNHQTKSLKLKPVALPKVASQLPDELGYSLLARRADLQAAHWYVESSLSTIDAAKA... | response to antibiotic cell outer membrane efflux transmembrane transporter activity Shigella flexneriAntibiotic resistance Cell outer membrane Lipoprotein Membrane Palmitate Reference proteome Signal Transmembrane Transmembrane beta strand MNRDSFYPAI MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKNGWPDSQWWLEYHDNQLT... |
protein repair | plasma membrane | electron transfer activity FMN binding heme binding metal ion binding | Shigella flexneri | Cell inner membrane Cell membrane Electron transport Flavoprotein FMN Heme Iron Membrane Metal-binding Reference proteome Transmembrane Transmembrane helix Transport | MRLTAKQVIW | MRLTAKQVIWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLAALLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGVNNLALLGKELITRPYLTLGIISWVILLALAFTSTQSMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLLSLFNRLRKQAHNKLSL | protein repair plasma membrane electron transfer activity FMN binding heme binding metal ion binding Shigella flexneriCell inner membrane Cell membrane Electron transport Flavoprotein FMN Heme Iron Membrane Metal-binding Reference proteome Transmembrane Transmembrane helix Transport MRLTAKQVIW MRLTAKQVIWLKVCLHLAGLLPFLW... |
arginyl-tRNA aminoacylation | cytoplasm | arginine-tRNA ligase activity ATP binding | Shigella flexneri | Aminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome | MNIQALLSEK | MNIQALLSEKVRQAMIAAGAPADCEPQIRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASDRLGVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDVFKNKEGEPMGVIIQKKDGGYLYTTTDIAC... | arginyl-tRNA aminoacylation cytoplasm arginine-tRNA ligase activity ATP binding Shigella flexneriAminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome MNIQALLSEK MNIQALLSEKVRQAMIAAGAPADCEPQIRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQ... |
DNA recombination DNA repair | cytoplasm; Holliday junction helicase complex; Holliday junction resolvase complex | ATP binding four-way junction DNA binding four-way junction helicase activity | Shigella flexneri | Cytoplasm DNA damage DNA recombination DNA repair DNA-binding Reference proteome | MIGRLRGIII | MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDTSSETLIREALRAAL | DNA recombination DNA repair cytoplasm; Holliday junction helicase complex; Holliday junction resolvase complex ATP binding four-way junction DNA binding four-way junction helicase activity Shigella flexneriCytoplasm DNA damage DNA recombination DNA repair DNA-binding Reference proteome MIGRLRGIII MIGRLRGIIIEKQPPLVLIEV... |
DNA replication termination | cytoplasm | DNA binding | Shigella flexneri | Cytoplasm DNA replication DNA-binding Reference proteome | MARYDLVDRL | MARYDLVDRLNTTFRQMEQELATFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD | DNA replication termination cytoplasm DNA binding Shigella flexneriCytoplasm DNA replication DNA-binding Reference proteome MARYDLVDRL MARYDLVDRLNTTFRQMEQELATFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDE... |
translation | cytoplasm | aminoacyl-tRNA hydrolase activity | Shigella flexneri | Cytoplasm Hydrolase Reference proteome | MTIKLIVGLA | MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGSEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ | translation cytoplasm aminoacyl-tRNA hydrolase activity Shigella flexneriCytoplasm Hydrolase Reference proteome MTIKLIVGLA MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGSEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ |
CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process lipopolysaccharide biosynthetic process | cytoplasm | 3-deoxy-manno-octulosonate cytidylyltransferase activity | Shigella flexneri | Cytoplasm Lipopolysaccharide biosynthesis Nucleotidyltransferase Reference proteome Transferase | MSFVVIIPAR | MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHDDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR | CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process lipopolysaccharide biosynthetic process cytoplasm 3-deoxy-manno-octulosonate cytidylyltransferase activity Shigella flexneriCytoplasm Lipopolysaccharide biosynthesis Nucleotidyltransferase Reference proteome Transferase MSFVVIIPAR MSFVVIIPARYASTRLPGKPLVDING... |
phosphorylation pyrimidine nucleotide metabolic process | cytoplasm | ATP binding CMP kinase activity dCMP kinase activity | Shigella flexneri | ATP-binding Cytoplasm Kinase Nucleotide-binding Reference proteome Transferase | MTAIAPVITI | MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQLIEKALQYARQKLALA | phosphorylation pyrimidine nucleotide metabolic process cytoplasm ATP binding CMP kinase activity dCMP kinase activity Shigella flexneriATP-binding Cytoplasm Kinase Nucleotide-binding Reference proteome Transferase MTAIAPVITI MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQ... |
response to antibiotic | plasma membrane | ATP binding ATP hydrolysis activity | Shigella flexneri | Antibiotic resistance ATP-binding Cell inner membrane Cell membrane Membrane Nucleotide-binding Reference proteome Translocase Transmembrane Transmembrane helix Transport | MTPLLELKDI | MTPLLELKDIRRSYPAGDEQVEVLKGISLNIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDIATLDADALAQLRREHFGFIFQRYHLLPHLTVEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDF... | response to antibiotic plasma membrane ATP binding ATP hydrolysis activity Shigella flexneriAntibiotic resistance ATP-binding Cell inner membrane Cell membrane Membrane Nucleotide-binding Reference proteome Translocase Transmembrane Transmembrane helix Transport MTPLLELKDI MTPLLELKDIRRSYPAGDEQVEVLKGISLNIYAGEMVAIVGASGSG... |
cellular detoxification of fluoride | plasma membrane | fluoride channel activity metal ion binding | Shigella flexneri | Cell inner membrane Cell membrane Ion channel Ion transport Membrane Metal-binding Reference proteome Sodium Transmembrane Transmembrane helix Transport | MLQLLLAVFI | MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIGAFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWLFSASTVH | cellular detoxification of fluoride plasma membrane fluoride channel activity metal ion binding Shigella flexneriCell inner membrane Cell membrane Ion channel Ion transport Membrane Metal-binding Reference proteome Sodium Transmembrane Transmembrane helix Transport MLQLLLAVFI MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLI... |
leucyl-tRNA aminoacylation | cytoplasm | aminoacyl-tRNA editing activity ATP binding leucine-tRNA ligase activity | Shigella flexneri | Aminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome | MQEQYRPEEI | MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPV... | leucyl-tRNA aminoacylation cytoplasm aminoacyl-tRNA editing activity ATP binding leucine-tRNA ligase activity Shigella flexneriAminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome MQEQYRPEEI MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRM... |
adenine salvage AMP salvage purine ribonucleoside salvage | cytoplasm | adenine phosphoribosyltransferase activity | Shigella flexneri | Cytoplasm Glycosyltransferase Purine salvage Reference proteome Transferase | MTATAQQLEY | MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH | adenine salvage AMP salvage purine ribonucleoside salvage cytoplasm adenine phosphoribosyltransferase activity Shigella flexneriCytoplasm Glycosyltransferase Purine salvage Reference proteome Transferase MTATAQQLEY MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYG... |
prolyl-tRNA aminoacylation | cytoplasm | aminoacyl-tRNA editing activity ATP binding proline-tRNA ligase activity | Shigella flexneri | Aminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome | MRTSQYLLST | MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLT... | prolyl-tRNA aminoacylation cytoplasm aminoacyl-tRNA editing activity ATP binding proline-tRNA ligase activity Shigella flexneriAminoacyl-tRNA synthetase ATP-binding Cytoplasm Ligase Nucleotide-binding Protein biosynthesis Reference proteome MRTSQYLLST MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIE... |
division septum assembly FtsZ-dependent cytokinesis protein polymerization | cell division site; cytoplasm | GTP binding GTPase activity | Shigella flexneri | Cell cycle Cell division Cytoplasm GTP-binding Nucleotide-binding Reference proteome Septation | MFEPMELTND | MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGENRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLGLVEVETVGNTIRAFASGNATVVIGTSLDPDMNDELRVTVVATGIGMDKR... | division septum assembly FtsZ-dependent cytokinesis protein polymerization cell division site; cytoplasm GTP binding GTPase activity Shigella flexneriCell cycle Cell division Cytoplasm GTP-binding Nucleotide-binding Reference proteome Septation MFEPMELTND MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQIGSGI... |
phosphorylation threonine biosynthetic process | cytoplasm | ATP binding homoserine kinase activity | Shigella flexneri | Amino-acid biosynthesis ATP-binding Cytoplasm Kinase Nucleotide-binding Reference proteome Threonine biosynthesis Transferase | MVKVYAPASS | MVKVYAPASSANMSVGFDVLGAAVAPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN | phosphorylation threonine biosynthetic process cytoplasm ATP binding homoserine kinase activity Shigella flexneriAmino-acid biosynthesis ATP-binding Cytoplasm Kinase Nucleotide-binding Reference proteome Threonine biosynthesis Transferase MVKVYAPASS MVKVYAPASSANMSVGFDVLGAAVAPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE... |
regulation of pH | plasma membrane | antiporter activity sodium ion transmembrane transporter activity | Tropheryma whipplei | Antiport Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Transmembrane Transmembrane helix Transport | MSIIRSERYS | MSIIRSERYSAIFLLCSAALAIIFANVLDPDTWHAVHSAVSEYHIFGLITPHDIVADFLLAVFFFAVAIELKHELVKGELSSFSKAIIPGVCAAGGILVPISIYLSVASVLPNGWPVPTATDVAFSLGILAIFGSSLPSKVRIFLLALAVLDDLAGIVIIATAFSVSISYWWIIVACITVGLFGFCSYRLARCKTSKTFLIIPAMLLCALAAWVSVYQSGIHATIAGVMLGIMLNRKQGAAIEHALEPYINGIILPAFAFLAAMVRVPHLPLDEISPALWGILLGLLFGKLLGISVFGIIALKFFRKKSISFFNLLVVSA... | regulation of pH plasma membrane antiporter activity sodium ion transmembrane transporter activity Tropheryma whipplei Antiport Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Transmembrane Transmembrane helix Transport MSIIRSERYS MSIIRSERYSAIFLLCSAALAIIFANVLDPDTWHAVHSAVSEYHIFGLITPHDIVA... |
protein folding | cytoplasm | adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding | Tropheryma whipplei | Chaperone Cytoplasm Reference proteome Stress response | MTKSNETERM | MTKSNETERMEESEETHSSDIRSASESDHASGSDHTESADEIPTADAEQGELEQLEKLKDDLARERAAFHNFRMARAKQAEIERDRTRSEVIRVILPVLDDFARIEKHSTLDDPFKAVVTKLRSAMEKIGLTAFGNPGDPFNPELHEALFQNPSPDVQTETVQDVIEAGYCLGETVIRAAKVVVQVPNG | protein folding cytoplasm adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding Tropheryma whipplei Chaperone Cytoplasm Reference proteome Stress response MTKSNETERM MTKSNETERMEESEETHSSDIRSASESDHASGSDHTESADEIPTADAEQGELEQLEKLKDDLARERAAFHNFRMARAKQAEIERDRTRSEVIRVIL... |
tRNA modification | cytoplasm | ATP binding ligase activity, forming carbon-nitrogen bonds | Tropheryma whipplei | ATP-binding Cytoplasm Ligase Nucleotide-binding Reference proteome tRNA processing | MLHRPRITPA | MLHRPRITPAVANARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNGRVGAVVVDHGLQENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFYDALEETKAYAIILAHTLDDQAETVLLGLMRGSGPSSLRGMKAVSYTPEDCRYMNNKACNSVTAVYAHNTQRCSCDSTQRCSCDSRPYPPPPEPRNENRSYFPHPSCKCVEGSATRFTNADIDSRFGVFIRPFLDITRHETGKICEFYGLDYWNDPHNEDVRFSRVRIRHNVMPVLENEIGPGVKYALSRTAKLAQLDTEYLD... | tRNA modification cytoplasm ATP binding ligase activity, forming carbon-nitrogen bonds Tropheryma whipplei ATP-binding Cytoplasm Ligase Nucleotide-binding Reference proteome tRNA processing MLHRPRITPA MLHRPRITPAVANARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNGRVGAVVVDHGLQENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFY... |
nucleotide-excision repair SOS response | cytoplasm; excinuclease repair complex | DNA binding excinuclease ABC activity | Tropheryma whipplei | Cytoplasm DNA damage DNA excision DNA repair Excision nuclease Reference proteome SOS response | MYPPRRIEIP | MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQYATHFGPYPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQKRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDETVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLSLPKRIVLFDKPSYL... | nucleotide-excision repair SOS response cytoplasm; excinuclease repair complex DNA binding excinuclease ABC activity Tropheryma whipplei Cytoplasm DNA damage DNA excision DNA repair Excision nuclease Reference proteome SOS response MYPPRRIEIP MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVADDIEALRLE... |
trans-translation | cytoplasm | RNA binding | Tropheryma whipplei | Cytoplasm Reference proteome RNA-binding | MHRRSSKSYS | MHRRSSKSYSSRNSKIPERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLIALARGKKLIDKREVIKEREATLEANRALKHRLRRPRAQRNTQRSVTPRRTRENKNVRGSKARSARRNVRREN | trans-translation cytoplasm RNA binding Tropheryma whipplei Cytoplasm Reference proteome RNA-binding MHRRSSKSYS MHRRSSKSYSSRNSKIPERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLIALARGKKLIDKREVIKEREATLEANRALKHRLRRPRAQRNTQRSVTPRRTRENKNVRGSKARSARRNV... |
DNA repair DNA replication SOS response | cytoplasm | ATP binding single-stranded DNA binding | Tropheryma whipplei | ATP-binding Cytoplasm DNA damage DNA repair DNA replication DNA-binding Nucleotide-binding Reference proteome SOS response | MQNNLISHIN | MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKPSKLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSKLAGVSSTAELFCQSSDCLIDTFDLLRDREIEEGVTLAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQ... | DNA repair DNA replication SOS response cytoplasm ATP binding single-stranded DNA binding Tropheryma whipplei ATP-binding Cytoplasm DNA damage DNA repair DNA replication DNA-binding Nucleotide-binding Reference proteome SOS response MQNNLISHIN MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIKSGEQKAEISA... |
DNA replication initiation regulation of DNA replication | cytoplasm | ATP binding ATP hydrolysis activity DNA replication origin binding | Tropheryma whipplei | ATP-binding Cytoplasm DNA replication DNA-binding Nucleotide-binding Reference proteome | MNKTLNPQEV | MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNSHLASVMDDIEVYDATKKTILDSYPSIKEIKITISPDVLEKEITEEINDLVQSMEEEDFALIDHTKPVIPNFFDQNTRVNFGGGPNNHHPTTGVNPRFTFDNFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYAKFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQFLQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECGLVCDIQKPDLETRIAILQKK... | DNA replication initiation regulation of DNA replication cytoplasm ATP binding ATP hydrolysis activity DNA replication origin binding Tropheryma whipplei ATP-binding Cytoplasm DNA replication DNA-binding Nucleotide-binding Reference proteome MNKTLNPQEV MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNSHLASVMDDIEVYDATK... |
protein insertion into membrane protein transport | plasma membrane | membrane insertase activity | Tropheryma whipplei | Cell membrane Chaperone Membrane Protein transport Transmembrane Transmembrane helix Transport | MFDGLFDFLQ | MFDGLFDFLQNILLPIKWVIEQILVFFHTLLGFLGFGDKSGLSWALSIVGLVIVIRATLIPVFLKQIRAQRKMLEIAPEVRRIQEKYKGKRDVLSRQSMNQEMMEIYRVRGANPLSSCLPIVLQMPVFFGLYQVIESAQNAGTGVGPLNGPLGMDFRDSRIFGVVPLHDSFSHDFYALQAGQAFNLITMIVAGVLTAIMIAVQLFTQLKVIPKNIPENAKNTSVYKNQKVMLYLLPIMFLGMGFSFPVGILIYWTASNVWSGVQQAVAIYRNPSPGSLAFELRRKRLGVQNKKTKGQRQQPVNKRRAKRR | protein insertion into membrane protein transport plasma membrane membrane insertase activity Tropheryma whipplei Cell membrane Chaperone Membrane Protein transport Transmembrane Transmembrane helix Transport MFDGLFDFLQ MFDGLFDFLQNILLPIKWVIEQILVFFHTLLGFLGFGDKSGLSWALSIVGLVIVIRATLIPVFLKQIRAQRKMLEIAPEVRRIQEKYKGKRDVLSRQSM... |
regulation of pH | plasma membrane | antiporter activity sodium ion transmembrane transporter activity | Tropheryma whipplei | Antiport Cell membrane Ion transport Membrane Sodium Sodium transport Transmembrane Transmembrane helix Transport | MSIIRSERYS | MSIIRSERYSAIFLLCSAALAIIFANVLDPDTWHAVHSAVSEYHIFGLITPHDIVADFLLAVFFFAVAIELKHELVKGELSSFSKAIIPGVCAAGGILVPISIYLSVASVLPNGWPVPTATDVAFSLGILAIFGSSLPSKVRIFLLALAVLDDLAGIVIIATAFSVSISYWWIIVACITVGLFGFCSYRLARCKTSKTFLIIPAMLLCALAAWVSVYQSGIHATIAGVMLGIMLNRKQGAAIEHALEPYINGIILPAFAFLAAMVRVPHLPLDEISPALWGILLGLLFGKLLGISVFGIIALKFFRKKSISFFNLLVVSA... | regulation of pH plasma membrane antiporter activity sodium ion transmembrane transporter activity Tropheryma whipplei Antiport Cell membrane Ion transport Membrane Sodium Sodium transport Transmembrane Transmembrane helix Transport MSIIRSERYS MSIIRSERYSAIFLLCSAALAIIFANVLDPDTWHAVHSAVSEYHIFGLITPHDIVADFLLAVFFFAVAIELKHEL... |
protein folding | cytoplasm | adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding | Tropheryma whipplei | Chaperone Cytoplasm Stress response | MTKSNETERM | MTKSNETERMEESEETHSSDIRSASESDHASGSDHTESADEIPTADAEQGELEQLEKLKDDLARERAAFHNFRMARAKQAEIERDRTRSEVIRVILPVLDDFARIEKHSTLDDPFKAVITKLRSAMEKIGLTAFGNPGDPFNPELHEALFQNPSPDVQTETVQDVIEAGYCLGETVIRAAKVVVQVPNG | protein folding cytoplasm adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding Tropheryma whipplei Chaperone Cytoplasm Stress response MTKSNETERM MTKSNETERMEESEETHSSDIRSASESDHASGSDHTESADEIPTADAEQGELEQLEKLKDDLARERAAFHNFRMARAKQAEIERDRTRSEVIRVILPVLDDFARIEKHSTLDDPF... |
trans-translation | cytoplasm | RNA binding | Tropheryma whipplei | Cytoplasm RNA-binding | MHRRSSKSYS | MHRRSSKSYSSRNSKTPERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLISLARGKKLIDKREVIKEREATLEANRALKHRLRRPRAQRNTQRSVTPRSTRENKNVQRNKARSARCNVRHEN | trans-translation cytoplasm RNA binding Tropheryma whipplei Cytoplasm RNA-binding MHRRSSKSYS MHRRSSKSYSSRNSKTPERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLISLARGKKLIDKREVIKEREATLEANRALKHRLRRPRAQRNTQRSVTPRSTRENKNVQRNKARSARCNVRHEN |
nucleotide-excision repair SOS response | cytoplasm; excinuclease repair complex | DNA binding excinuclease ABC activity | Tropheryma whipplei | Cytoplasm DNA damage DNA excision DNA repair Excision nuclease SOS response | MYPPRRIEIP | MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQYATHFGPYPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQKRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDETVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLSLPKRIVLFDKPSYL... | nucleotide-excision repair SOS response cytoplasm; excinuclease repair complex DNA binding excinuclease ABC activity Tropheryma whipplei Cytoplasm DNA damage DNA excision DNA repair Excision nuclease SOS response MYPPRRIEIP MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDK... |
protein transport by the Tat complex | TAT protein transport complex | protein transmembrane transporter activity | Tropheryma whipplei | Cell membrane Membrane Protein transport Translocation Transmembrane Transmembrane helix Transport | MGNVFSGWHL | MGNVFSGWHLLVILLVIVLLFGTSRLPKLSKSVVEALKIFRRSFNEASDITRSQDGHPDSQGNFAESASSVPFVKSEKQSEKRASVTEAKKSK | protein transport by the Tat complex TAT protein transport complex protein transmembrane transporter activity Tropheryma whipplei Cell membrane Membrane Protein transport Translocation Transmembrane Transmembrane helix Transport MGNVFSGWHL MGNVFSGWHLLVILLVIVLLFGTSRLPKLSKSVVEALKIFRRSFNEASDITRSQDGHPDSQGNFAESASSVPFVKSEKQ... |
heme O biosynthetic process | plasma membrane | protoheme IX farnesyltransferase activity | Tropheryma whipplei | Cell membrane Heme biosynthesis Membrane Transferase Transmembrane Transmembrane helix | MGMQGRSFAR | MGMQGRSFARQIRAYVSLTKPRVVELLLLTTVPTMILAQRGVPNPLSVLSVLLGGAMSAGAAGAFNCYIDRDIDSKMSRTRNRPLVTGALSPKASLIFAWMLCVISVLWFLLFVNWLSALLSAIAVFLYAFFYSIVLKKRTPQNIVWGGLAGCMPVLIAWAAVTGSIDWPAIVLFAVVFLWTPPHYWPLSIHYSEDYRLTSIPMLGAIFPRKLVVLQVLLYAFAVVACTLLLIPVAHMTPLYGLFSAVLGAWFVYEIYRLYVRVVRGHEIKAMHIFSLSNTYLSLVFLSVGIDGVVSQLL | heme O biosynthetic process plasma membrane protoheme IX farnesyltransferase activity Tropheryma whipplei Cell membrane Heme biosynthesis Membrane Transferase Transmembrane Transmembrane helix MGMQGRSFAR MGMQGRSFARQIRAYVSLTKPRVVELLLLTTVPTMILAQRGVPNPLSVLSVLLGGAMSAGAAGAFNCYIDRDIDSKMSRTRNRPLVTGALSPKASLIFAWMLCVISVLWFLLFVN... |
DNA repair DNA replication SOS response | cytoplasm | ATP binding single-stranded DNA binding | Tropheryma whipplei | ATP-binding Cytoplasm DNA damage DNA repair DNA replication DNA-binding Nucleotide-binding SOS response | MQNNLISHIN | MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKPSKLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSKLAGVSSTAELFCQSSDCLIDTFDLLRDREIEEGVTLAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQ... | DNA repair DNA replication SOS response cytoplasm ATP binding single-stranded DNA binding Tropheryma whipplei ATP-binding Cytoplasm DNA damage DNA repair DNA replication DNA-binding Nucleotide-binding SOS response MQNNLISHIN MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNS... |
DNA replication initiation regulation of DNA replication | cytoplasm | ATP binding ATP hydrolysis activity DNA replication origin binding | Tropheryma whipplei | ATP-binding Cytoplasm DNA replication DNA-binding Nucleotide-binding | MNKTLNPQEV | MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNSHLASVMDDIEVYDATKKTILDSYPSIKEIKITISPDVLEKEITEEINDLVQSMEEEDFALIDHTKPVIPNFFDQNTRVNFGGGPNNHHPTTGVNPRFTFDNFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYAKFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQFLQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECGLVCDIQKPDLETRIAILQKK... | DNA replication initiation regulation of DNA replication cytoplasm ATP binding ATP hydrolysis activity DNA replication origin binding Tropheryma whipplei ATP-binding Cytoplasm DNA replication DNA-binding Nucleotide-binding MNKTLNPQEV MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNSHLASVMDDIEVYDATKKTILDSYPSIKEIKITISP... |
regulation of translational termination | cytoplasm | GTP binding GTPase activity guanosine tetraphosphate binding translation release factor activity, codon specific | Shigella flexneri | Cytoplasm GTP-binding Nucleotide-binding Protein biosynthesis Reference proteome | MTLSPYLKEV | MTLSPYLKEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLNGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRV... | regulation of translational termination cytoplasm GTP binding GTPase activity guanosine tetraphosphate binding translation release factor activity, codon specific Shigella flexneriCytoplasm GTP-binding Nucleotide-binding Protein biosynthesis Reference proteome MTLSPYLKEV MTLSPYLKEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKG... |
phosphoenolpyruvate-dependent sugar phosphotransferase system phosphorylation | cytoplasm | kinase activity | Shigella flexneri | Cytoplasm Kinase Phosphoprotein Phosphotransferase system Reference proteome Transferase Transport | MKLHDSLAEN | MKLHDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYYQAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDILITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA | phosphoenolpyruvate-dependent sugar phosphotransferase system phosphorylation cytoplasm kinase activity Shigella flexneriCytoplasm Kinase Phosphoprotein Phosphotransferase system Reference proteome Transferase Transport MKLHDSLAEN MKLHDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYYQAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPL... |
negative regulation of DNA-templated transcription | cytoplasm | DNA binding DNA-binding transcription factor activity | Shigella flexneri | Cytoplasm DNA-binding Reference proteome Repressor Transcription Transcription regulation | MTEAQRHQIL | MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV | negative regulation of DNA-templated transcription cytoplasm DNA binding DNA-binding transcription factor activity Shigella flexneriCytoplasm DNA-binding Reference proteome Repressor Transcription Transcription regulation MTEAQRHQIL MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAA... |
mismatch repair | mismatch repair complex | ATP binding ATP hydrolysis activity ATP-dependent DNA damage sensor activity mismatched DNA binding | Shigella flexneri | DNA damage DNA repair Reference proteome | MPIQVLPPQL | MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD... | mismatch repair mismatch repair complex ATP binding ATP hydrolysis activity ATP-dependent DNA damage sensor activity mismatched DNA binding Shigella flexneriDNA damage DNA repair Reference proteome MPIQVLPPQL MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLT... |
response to metal ion | cytoplasm | copper ion binding | Shigella flexneri | Copper Cytoplasm Metal-binding Reference proteome | MLDEKSSNTT | MLDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR | response to metal ion cytoplasm copper ion binding Shigella flexneriCopper Cytoplasm Metal-binding Reference proteome MLDEKSSNTT MLDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR |
cellular response to oxidative stress DNA damage response | cytoplasm | anti-sigma factor antagonist activity | Shigella flexneri | Cytoplasm Reference proteome Stress response | MMRQSLQAVL | MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIMLYHDDEPLTFDLVWDNGGWRSATLENVS | cellular response to oxidative stress DNA damage response cytoplasm anti-sigma factor antagonist activity Shigella flexneriCytoplasm Reference proteome Stress response MMRQSLQAVL MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIMLYHDDEPLTFDLVWDNGGWRSATLENVS |
response to antibiotic xenobiotic detoxification by transmembrane export across the plasma membrane | plasma membrane | xenobiotic transmembrane transporter activity | Shigella flexneri | Antibiotic resistance Cell inner membrane Cell membrane Membrane Reference proteome Signal-anchor Transmembrane Transmembrane helix Transport | MESTPKKAPR | MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVDALVAQRAAVEADIALTKLHLEMTTVRAPFDGRIISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKI... | response to antibiotic xenobiotic detoxification by transmembrane export across the plasma membrane plasma membrane xenobiotic transmembrane transporter activity Shigella flexneriAntibiotic resistance Cell inner membrane Cell membrane Membrane Reference proteome Signal-anchor Transmembrane Transmembrane helix Transport... |
response to antibiotic | cell outer membrane | efflux transmembrane transporter activity | Shigella flexneri | Antibiotic resistance Cell outer membrane Lipoprotein Membrane Palmitate Reference proteome Signal Transmembrane Transmembrane beta strand | MINRQLSRLL | MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDAGSQLQVAALGMLNRQRVSANGFLSPYAMDAPALGMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAVKAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPEIKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDS... | response to antibiotic cell outer membrane efflux transmembrane transporter activity Shigella flexneriAntibiotic resistance Cell outer membrane Lipoprotein Membrane Palmitate Reference proteome Signal Transmembrane Transmembrane beta strand MINRQLSRLL MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQWWKQLNDPQ... |
sodium ion transport | plasma membrane | acetate transmembrane transporter activity glycolate transmembrane transporter activity symporter activity | Shigella flexneri | Cell inner membrane Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Symport Transmembrane Transmembrane helix Transport | MKRVLTALAA | MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTSADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAI... | sodium ion transport plasma membrane acetate transmembrane transporter activity glycolate transmembrane transporter activity symporter activity Shigella flexneriCell inner membrane Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Symport Transmembrane Transmembrane helix Transport MKRVLTA... |
proteolysis | cytoplasm | dipeptidase activity serine-type peptidase activity | Shigella flexneri | Cytoplasm Dipeptidase Hydrolase Protease Reference proteome Serine protease | MELLLLSNST | MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQTWDDYTEKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGLLAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTNALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGEEAVPLEAGHRF | proteolysis cytoplasm dipeptidase activity serine-type peptidase activity Shigella flexneriCytoplasm Dipeptidase Hydrolase Protease Reference proteome Serine protease MELLLLSNST MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQTWDDYTEKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGLLAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQ... |
regulation of translation translation | large ribosomal subunit | rRNA binding structural constituent of ribosome tRNA binding | Shigella flexneri | Reference proteome Repressor Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding Translation regulation tRNA-binding | MAKLTKRMRV | MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN | regulation of translation translation large ribosomal subunit rRNA binding structural constituent of ribosome tRNA binding Shigella flexneriReference proteome Repressor Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding Translation regulation tRNA-binding MAKLTKRMRV MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVD... |
translation | ribonucleoprotein complex; ribosome | large ribosomal subunit rRNA binding structural constituent of ribosome | Shigella flexneri | Methylation Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MAKKVQAYVK | MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQQIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED | translation ribonucleoprotein complex; ribosome large ribosomal subunit rRNA binding structural constituent of ribosome Shigella flexneriMethylation Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MAKKVQAYVK MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLL... |
positive regulation of DNA-templated transcription rhamnose metabolic process | cytoplasm | DNA-binding transcription factor activity sequence-specific DNA binding | Shigella flexneri | Activator Cytoplasm DNA-binding Reference proteome Repeat Rhamnose metabolism Transcription Transcription regulation | MTVLHSVDFF | MTVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ | positive regulation of DNA-templated transcription rhamnose metabolic process cytoplasm DNA-binding transcription factor activity sequence-specific DNA binding Shigella flexneriActivator Cytoplasm DNA-binding Reference proteome Repeat Rhamnose metabolism Transcription Transcription regulation MTVLHSVDFF MTVLHSVDFFPSCNA... |
Mo-molybdopterin cofactor biosynthetic process | cytoplasm | sulfur carrier activity sulfurtransferase activity | Shigella flexneri | Cytoplasm Molybdenum cofactor biosynthesis Reference proteome | MKKTQRKEIE | MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGRLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN | Mo-molybdopterin cofactor biosynthetic process cytoplasm sulfur carrier activity sulfurtransferase activity Shigella flexneriCytoplasm Molybdenum cofactor biosynthesis Reference proteome MKKTQRKEIE MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCG... |
L-asparagine biosynthetic process | cytoplasm | aspartate-ammonia ligase activity ATP binding | Shigella flexneri | Amino-acid biosynthesis Asparagine biosynthesis ATP-binding Cytoplasm Ligase Nucleotide-binding Reference proteome | MKTAYIAKQR | MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQLSTLKSTVEAIWAGIKATEAAVNEEFGLAPFLPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQLEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPA... | L-asparagine biosynthetic process cytoplasm aspartate-ammonia ligase activity ATP binding Shigella flexneriAmino-acid biosynthesis Asparagine biosynthesis ATP-binding Cytoplasm Ligase Nucleotide-binding Reference proteome MKTAYIAKQR MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFS... |
tRNA wobble uridine modification | cytoplasm | flavin adenine dinucleotide binding | Shigella flexneri | Cytoplasm FAD Flavoprotein NAD Reference proteome tRNA processing | MFYPDPFDVI | MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDV... | tRNA wobble uridine modification cytoplasm flavin adenine dinucleotide binding Shigella flexneriCytoplasm FAD Flavoprotein NAD Reference proteome tRNA processing MFYPDPFDVI MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFR... |
DNA-templated transcription | DNA-directed RNA polymerase complex | DNA binding DNA-directed 5'-3' RNA polymerase activity | Shigella flexneri | DNA-directed RNA polymerase Nucleotidyltransferase Reference proteome Transcription Transferase | MARVTVQDAV | MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQELEAAELQAVTAIAEGRR | DNA-templated transcription DNA-directed RNA polymerase complex DNA binding DNA-directed 5'-3' RNA polymerase activity Shigella flexneriDNA-directed RNA polymerase Nucleotidyltransferase Reference proteome Transcription Transferase MARVTVQDAV MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQELEA... |
dicarboxylic acid transport | plasma membrane | symporter activity | Shigella flexneri | Cell inner membrane Cell membrane Membrane Reference proteome Symport Transmembrane Transmembrane helix Transport | MKTSLFKSLY | MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLFGFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGALGAMAFTIGKYGVGTLVQLGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQAT... | dicarboxylic acid transport plasma membrane symporter activity Shigella flexneriCell inner membrane Cell membrane Membrane Reference proteome Symport Transmembrane Transmembrane helix Transport MKTSLFKSLY MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAK... |
proteolysis | plasma membrane | serine-type endopeptidase activity | Shigella flexneri | Cell inner membrane Cell membrane Hydrolase Membrane Protease Reference proteome Serine protease Transmembrane Transmembrane helix | MLMITSFANP | MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPADPRYLAASWLAGHTGSGLHYRRYPFFAALRERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYMQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK | proteolysis plasma membrane serine-type endopeptidase activity Shigella flexneriCell inner membrane Cell membrane Hydrolase Membrane Protease Reference proteome Serine protease Transmembrane Transmembrane helix MLMITSFANP MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPADPRYLAASWLAGHTGSGLHYRRYPFFAALRERAGPVTW... |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MELVLKDAQS | MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLQKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MELVLKDAQS MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD... |
translation | large ribosomal subunit | rRNA binding structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | METIAKHRHA | METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVQVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR | translation large ribosomal subunit rRNA binding structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding METIAKHRHA METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVQVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome tRNA binding | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding tRNA-binding | MLQPKRTKFR | MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMGGVPEELAREAFKLAAAKLPIKTTFVTKTVM | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome tRNA binding Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding tRNA-binding MLQPKRTKFR MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVE... |
translation | ribonucleoprotein complex; ribosome | structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein | MKAKELREKS | MKAKELREKSIEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA | translation ribonucleoprotein complex; ribosome structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein MKAKELREKS MKAKELREKSIEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA |
translation | cytosol; ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MAAKIRRDDE | MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIIEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK | translation cytosol; ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MAAKIRRDDE MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIIEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome tRNA binding | Shigella flexneri | Acetylation Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding tRNA-binding | MAKLHDYYKD | MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAFSRQKPLSTKARKFVACFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome tRNA binding Shigella flexneriAcetylation Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding tRNA-binding MAKLHDYYKD MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAFSRQKPLSTKARKFVACFK... |
translation | cytoplasm; ribonucleoprotein complex; ribosome | structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein | MAENQYYGTG | MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPMELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR | translation cytoplasm; ribonucleoprotein complex; ribosome structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein MAENQYYGTG MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPMELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR |
DNA modification mismatch repair | cytoplasm | DNA binding endonuclease activity | Shigella flexneri | Cytoplasm DNA damage DNA repair Endonuclease Hydrolase Nuclease Reference proteome | MSQPRPLLSP | MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALDGLVTPENLKRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVARLTGNSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFTSALLARHSLIQ | DNA modification mismatch repair cytoplasm DNA binding endonuclease activity Shigella flexneriCytoplasm DNA damage DNA repair Endonuclease Hydrolase Nuclease Reference proteome MSQPRPLLSP MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALDGLVTPENLKRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVARLTGNSGVTWETSHVRHKLKRVLWIPVEGERSIP... |
methylation tRNA processing | cytoplasm | nucleic acid binding tRNA (adenine-N6)-methyltransferase activity | Shigella flexneri | Cytoplasm Methyltransferase Reference proteome S-adenosyl-L-methionine Transferase tRNA processing | MSQSTSVLRR | MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECATPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM | methylation tRNA processing cytoplasm nucleic acid binding tRNA (adenine-N6)-methyltransferase activity Shigella flexneriCytoplasm Methyltransferase Reference proteome S-adenosyl-L-methionine Transferase tRNA processing MSQSTSVLRR MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENI... |
DNA catabolic process | cytoplasm; exodeoxyribonuclease VII complex | exodeoxyribonuclease VII activity nucleic acid binding | Shigella flexneri | Cytoplasm Exonuclease Hydrolase Nuclease Reference proteome | MLPSQSPAIF | MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQQKYEQLKAKLQAECLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTSVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQSARQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLE... | DNA catabolic process cytoplasm; exodeoxyribonuclease VII complex exodeoxyribonuclease VII activity nucleic acid binding Shigella flexneriCytoplasm Exonuclease Hydrolase Nuclease Reference proteome MLPSQSPAIF MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQ... |
cysteine biosynthetic process sulfate assimilation | plasma membrane | sulfate transmembrane transporter activity | Shigella flexneri | Amino-acid biosynthesis Cell inner membrane Cell membrane Cysteine biosynthesis Membrane Reference proteome Sulfate transport Transmembrane Transmembrane helix Transport | MVSSFTSAPR | MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMGGAFWWLFTQLDVWIPTFMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFVWYLPRAIVLLILYFIPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDTHKVPFKEMRTALRTRKITNMQFGALTSLFTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR | cysteine biosynthetic process sulfate assimilation plasma membrane sulfate transmembrane transporter activity Shigella flexneriAmino-acid biosynthesis Cell inner membrane Cell membrane Cysteine biosynthesis Membrane Reference proteome Sulfate transport Transmembrane Transmembrane helix Transport MVSSFTSAPR MVSSFTSAPRSG... |
phosphoenolpyruvate-dependent sugar phosphotransferase system | plasma membrane | protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | Shigella flexneri | Cell inner membrane Cell membrane Membrane Phosphoprotein Phosphotransferase system Reference proteome Sugar transport Transferase Transmembrane Transmembrane helix Transport | MAIKKRSATV | MAIKKRSATVVPGASGAAAAVKNLQASKSSFWGELPQHVMSGISRMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSFGGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPVPSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMF... | phosphoenolpyruvate-dependent sugar phosphotransferase system plasma membrane protein-N(PI)-phosphohistidine-sugar phosphotransferase activity Shigella flexneriCell inner membrane Cell membrane Membrane Phosphoprotein Phosphotransferase system Reference proteome Sugar transport Transferase Transmembrane Transmembrane h... |
lipopolysaccharide metabolic process | periplasmic space | phosphatase activity | Shigella flexneri | Hydrolase Periplasm Reference proteome Signal | MLAFCRSSLK | MLAFCRSSLKSKKYFIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADISDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKNKRDAIFKPDYLDGLVMHVEKGKVYLDGEFVNH | lipopolysaccharide metabolic process periplasmic space phosphatase activity Shigella flexneriHydrolase Periplasm Reference proteome Signal MLAFCRSSLK MLAFCRSSLKSKKYFIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADISDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKNKR... |
cytochrome complex assembly | plasma membrane | heme transmembrane transporter activity | Shigella flexneri | Cell inner membrane Cell membrane Cytochrome c-type biogenesis Membrane Reference proteome Transmembrane Transmembrane helix Transport | MMFWRIFRLE | MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVEGYLAILGALLAGTATLSPFATAAALRISIQ | cytochrome complex assembly plasma membrane heme transmembrane transporter activity Shigella flexneriCell inner membrane Cell membrane Cytochrome c-type biogenesis Membrane Reference proteome Transmembrane Transmembrane helix Transport MMFWRIFRLE MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDD... |
histidine biosynthetic process | cytoplasm | 1-(5-phosphoribosyl)-5-imidazole-4-carboxamide isomerase activity | Shigella flexneri | Amino-acid biosynthesis Cytoplasm Histidine biosynthesis Isomerase Reference proteome | MIIPALDLID | MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSPDVVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTGVRGVIVGRALLEGKFTVKEAIACWQNA | histidine biosynthetic process cytoplasm 1-(5-phosphoribosyl)-5-imidazole-4-carboxamide isomerase activity Shigella flexneriAmino-acid biosynthesis Cytoplasm Histidine biosynthesis Isomerase Reference proteome MIIPALDLID MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARV... |
bacterial-type flagellum-dependent cell motility | bacterial-type flagellum basal body | cytoskeletal motor activity structural molecule activity | Shigella flexneri | Bacterial flagellum Reference proteome | MSAIQGIEGV | MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTVARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV | bacterial-type flagellum-dependent cell motility bacterial-type flagellum basal body cytoskeletal motor activity structural molecule activity Shigella flexneriBacterial flagellum Reference proteome MSAIQGIEGV MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTVARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV |
glucan biosynthetic process | periplasmic space | carbohydrate binding catalytic activity | Shigella flexneri | Periplasm Reference proteome Signal | MDRRRFIKGS | MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQRFDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLDAQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFWFDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGISPMTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNN... | glucan biosynthetic process periplasmic space carbohydrate binding catalytic activity Shigella flexneriPeriplasm Reference proteome Signal MDRRRFIKGS MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQRFDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLDAQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAGFRVFKAPELA... |
response to chemical | plasma membrane | spermidine transmembrane transporter activity | Shigella flexneri | Cell inner membrane Cell membrane Membrane Reference proteome Transmembrane Transmembrane helix Transport | MAQFEWVHAA | MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGIDLSVVYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMIMVKLA | response to chemical plasma membrane spermidine transmembrane transporter activity Shigella flexneriCell inner membrane Cell membrane Membrane Reference proteome Transmembrane Transmembrane helix Transport MAQFEWVHAA MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGIDLSVVYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGM... |
methylation | cytoplasm | trans-aconitate 2-methyltransferase activity | Shigella flexneri | Cytoplasm Methyltransferase Reference proteome S-adenosyl-L-methionine Transferase | MSDWNPSLYL | MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPEQALDLIFANASLQWLPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLTRYHQMLEEQYPLQENGQILLAFPRLFIVARRTE | methylation cytoplasm trans-aconitate 2-methyltransferase activity Shigella flexneriCytoplasm Methyltransferase Reference proteome S-adenosyl-L-methionine Transferase MSDWNPSLYL MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPEQALDLIFANASLQWLPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLM... |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MARVKRGVIA | MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTTLVEKAKAALA | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MARVKRGVIA MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTTLVEKAKAA... |
post-transcriptional regulation of gene expression | cytoplasm | RNA strand annealing activity RNA strand-exchange activity | Shigella flexneri | Chaperone Cytoplasm Reference proteome RNA-binding | MENQPKLNSS | MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF | post-transcriptional regulation of gene expression cytoplasm RNA strand annealing activity RNA strand-exchange activity Shigella flexneriChaperone Cytoplasm Reference proteome RNA-binding MENQPKLNSS MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAKK... |
cell wall macromolecule catabolic process cell wall organization peptidoglycan metabolic process | cell outer membrane | lytic endotransglycosylase activity | Shigella flexneri | Cell wall biogenesis/degradation Lyase Reference proteome | MPVVTLTGIP | MPVVTLTGIPGYTGLRIEIDMVCLFDWLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM | cell wall macromolecule catabolic process cell wall organization peptidoglycan metabolic process cell outer membrane lytic endotransglycosylase activity Shigella flexneriCell wall biogenesis/degradation Lyase Reference proteome MPVVTLTGIP MPVVTLTGIPGYTGLRIEIDMVCLFDWLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIES... |
phosphorelay signal transduction system regulation of DNA-templated transcription | cytoplasm | DNA binding | Shigella flexneri | Activator Cytoplasm DNA-binding Phosphoprotein Reference proteome Repressor Transcription Transcription regulation Two-component regulatory system Virulence | MRVLVVEDNA | MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR | phosphorelay signal transduction system regulation of DNA-templated transcription cytoplasm DNA binding Shigella flexneriActivator Cytoplasm DNA-binding Phosphoprotein Reference proteome Repressor Transcription Transcription regulation Two-component regulatory system Virulence MRVLVVEDNA MRVLVVEDNALLRHHLKVQIQDAGHQVDDAE... |
lipoprotein localization to membrane | plasma membrane | ATP binding ATP hydrolysis activity | Shigella flexneri | ATP-binding Cell inner membrane Cell membrane Membrane Nucleotide-binding Reference proteome Translocase Transport | MNKILLQCDN | MNKILLQCDNLCKRYQEGSVQTDVLLNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSCALEMLKAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE | lipoprotein localization to membrane plasma membrane ATP binding ATP hydrolysis activity Shigella flexneriATP-binding Cell inner membrane Cell membrane Membrane Nucleotide-binding Reference proteome Translocase Transport MNKILLQCDN MNKILLQCDNLCKRYQEGSVQTDVLLNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK... |
glucan biosynthetic process | periplasmic space | carbohydrate binding catalytic activity | Shigella flexneri | Periplasm Reference proteome Signal | MMKMRWLSAA | MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPRGFGLLQRGRDFS... | glucan biosynthetic process periplasmic space carbohydrate binding catalytic activity Shigella flexneriPeriplasm Reference proteome Signal MMKMRWLSAA MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSA... |
potassium ion transport | plasma membrane | monoatomic cation transmembrane transporter activity | Shigella flexneri | Cell membrane Membrane Reference proteome Repeat Transmembrane Transmembrane helix Transport | MNINVAELLN | MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLHHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLA... | potassium ion transport plasma membrane monoatomic cation transmembrane transporter activity Shigella flexneriCell membrane Membrane Reference proteome Repeat Transmembrane Transmembrane helix Transport MNINVAELLN MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVI... |
protein transport | plasma membrane | dipeptide transmembrane transporter activity peptide:proton symporter activity | Shigella flexneri | Cell inner membrane Cell membrane Membrane Peptide transport Protein transport Reference proteome Transmembrane Transmembrane helix Transport | MNKHASQPRA | MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFA... | protein transport plasma membrane dipeptide transmembrane transporter activity peptide:proton symporter activity Shigella flexneriCell inner membrane Cell membrane Membrane Peptide transport Protein transport Reference proteome Transmembrane Transmembrane helix Transport MNKHASQPRA MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLT... |
L-proline biosynthetic process | cytoplasm | glutamate-5-semialdehyde dehydrogenase activity NADP binding | Shigella flexneri | Amino-acid biosynthesis Cytoplasm NADP Oxidoreductase Proline biosynthesis Reference proteome | MLEQMGIAAK | MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNV... | L-proline biosynthetic process cytoplasm glutamate-5-semialdehyde dehydrogenase activity NADP binding Shigella flexneriAmino-acid biosynthesis Cytoplasm NADP Oxidoreductase Proline biosynthesis Reference proteome MLEQMGIAAK MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDG... |
translation | small ribosomal subunit | structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein | MATVSMRDML | MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIVSRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEAE | translation small ribosomal subunit structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein MATVSMRDML MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIVSRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDA... |
rRNA base methylation | cytoplasm | rRNA (cytosine-N4-)-methyltransferase activity | Shigella flexneri | Cytoplasm Methyltransferase Reference proteome rRNA processing S-adenosyl-L-methionine Transferase | MMENYKHTTV | MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA | rRNA base methylation cytoplasm rRNA (cytosine-N4-)-methyltransferase activity Shigella flexneriCytoplasm Methyltransferase Reference proteome rRNA processing S-adenosyl-L-methionine Transferase MMENYKHTTV MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAER... |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Shigella flexneri | Reference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MANIKSAKKR | MANIKSAKKRAIQSEKARKIIASRRSMMRPFIKKGDAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Shigella flexneriReference proteome Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MANIKSAKKR MANIKSAKKRAIQSEKARKIIASRRSMMRPFIKKGDAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA |
regulation of pH | plasma membrane | antiporter activity sodium ion transmembrane transporter activity | Shigella flexneri | Antiport Cell inner membrane Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Transmembrane Transmembrane helix Transport | MKHLHRFFSS | MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLVLKIFLMALAIIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLP... | regulation of pH plasma membrane antiporter activity sodium ion transmembrane transporter activity Shigella flexneriAntiport Cell inner membrane Cell membrane Ion transport Membrane Reference proteome Sodium Sodium transport Transmembrane Transmembrane helix Transport MKHLHRFFSS MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHD... |
urea catabolic process | cytoplasm | nickel cation binding urease activity | Streptococcus thermophilus | Cytoplasm Hydrolase | MQLTMREQEK | MQLTMREQEKMMISLAAMIAQRRKDKGIKLNHPEAVALITDYVLEGAREGKTVAQLMDEARNLLTREDVMEGIAEMIPMIQVEATFTDSTKLVTVHDPIQ | urea catabolic process cytoplasm nickel cation binding urease activity Streptococcus thermophilusCytoplasm Hydrolase MQLTMREQEK MQLTMREQEKMMISLAAMIAQRRKDKGIKLNHPEAVALITDYVLEGAREGKTVAQLMDEARNLLTREDVMEGIAEMIPMIQVEATFTDSTKLVTVHDPIQ |
proteolysis | plasma membrane | peptidase activity | Methylobacillus sp. | Cell membrane Hydrolase Membrane Protease Transmembrane Transmembrane helix | MEKHIKHAIR | MEKHIKHAIRWPSLDTIPWAWVAIAIGLLILYFPTFWDLFHGLWGTERHAHGPIVFFVSIWFFYFKFKQLPEYGITYDPSPKLGWPILVLGLLLFILGRSQTLLIFEVGSLIPVLLGITLIFMGTRVAKFLWFAFFFLCFVVPLPAFVVDAATLPMKTAVSFATAHILYALDYPIARTGVMLTIGQYQLLVADACAGLNSLFTLEVLGLLYMNVTHHESPFRNFMLAVLIIPISFIANVTRVIVLALITYHWGDAAGQGFLHEFSGIVLFITALMLVIATDSLLRFFSRKFEKVPSTQSVDLKR | proteolysis plasma membrane peptidase activity Methylobacillus sp. Cell membrane Hydrolase Membrane Protease Transmembrane Transmembrane helix MEKHIKHAIR MEKHIKHAIRWPSLDTIPWAWVAIAIGLLILYFPTFWDLFHGLWGTERHAHGPIVFFVSIWFFYFKFKQLPEYGITYDPSPKLGWPILVLGLLLFILGRSQTLLIFEVGSLIPVLLGITLIFMGTRVAKFLWFAFFFLCFVVPLPAFVVDAATLPMKTAVSFATAH... |
glucan biosynthetic process | plasma membrane | hexosyltransferase activity | Xanthomonas euvesicatoria | Cell inner membrane Cell membrane Glycosyltransferase Membrane Transferase Transmembrane Transmembrane helix | MDGTVTPSPT | MDGTVTPSPTTTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAGLQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYNELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQMLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVALLHGAESNYWGHNAII... | glucan biosynthetic process plasma membrane hexosyltransferase activity Xanthomonas euvesicatoriaCell inner membrane Cell membrane Glycosyltransferase Membrane Transferase Transmembrane Transmembrane helix MDGTVTPSPT MDGTVTPSPTTTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLWPDGISVLEGCLLGLFVLLF... |
transport of virus in host, cell to cell | host cell cytoplasm; host cell plasmodesma; host cytoskeleton | RNA binding | Odontoglossum ringspot virus | Host cell junction Host cytoplasm Host cytoskeleton RNA-binding Transport Viral movement protein | MGRLRFVVLL | MGRLRFVVLLSIFPIKTFSEPCYTMALVLRDSIKISEFINLSAFEKLLPSALTAVKSVRIPKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNLPDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQVMTNIRGVEMEKGFCPLSLEFVSICVVYLNNIKLGLREKILNVTEGGPTELTEAVVDRFVEKVPMAARLKSFRSVNKKKPSNSSKFVNGKSRLNSRNKLNYENGDSDVGTSVVDDIVVGNGVSDIRIDDDCESFDAQSESY | transport of virus in host, cell to cell host cell cytoplasm; host cell plasmodesma; host cytoskeleton RNA binding Odontoglossum ringspot virus Host cell junction Host cytoplasm Host cytoskeleton RNA-binding Transport Viral movement protein MGRLRFVVLL MGRLRFVVLLSIFPIKTFSEPCYTMALVLRDSIKISEFINLSAFEKLLPSALTAVKSVRIPKVDKII... |
virion assembly | host cell cytoplasm; host cell nucleus; host cell plasma membrane; membrane; viral envelope | structural constituent of virion | Ovine respiratory syncytial virus | Host cell membrane Host cytoplasm Host membrane Host nucleus Host-virus interaction Membrane Viral matrix protein Virion | METYVNKLHE | METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSISADLLIKELINVNILVRQISTLKGPSLKIMINSRSAVLAQMPNKFTISANVSLDERSKLAYDITTPCEIKACSLTCLKVKNMLTTVKDLTMKTFNPTHEIIALCEFENIMTSKKVVIPTFLRSINVKAKDLDSLENIATTEFKNAITNAKIIPYAGLVLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFSIKPIED | virion assembly host cell cytoplasm; host cell nucleus; host cell plasma membrane; membrane; viral envelope structural constituent of virion Ovine respiratory syncytial virus Host cell membrane Host cytoplasm Host membrane Host nucleus Host-virus interaction Membrane Viral matrix protein Virion METYVNKLHE METYVNKLHEGS... |
transport of virus in host, cell to cell | host cell cytoplasm; host cell plasmodesma; host cytoskeleton | RNA binding | Odontoglossum ringspot virus | Host cell junction Host cytoplasm Host cytoskeleton RNA-binding Transport Viral movement protein | MGRLRFVVLL | MGRLRFVVLLSIFPIKTFSEPCSTMALVLRDSIKISEFINLSASEKLLPSALTAVKSVRISKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNLPDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQVMINIRGVEMEKGFCPLSLEFVSICVVYLNNIKLGLREKILNVTEGGPTELTEAVVDEFVEKVPMAARLKSFRSVNKKKPSDSSKFVNGKSRLNSRNKLNYENGDSDVGISVVDDIVVGNGVSDIRIDDDCESFDAQSDPY | transport of virus in host, cell to cell host cell cytoplasm; host cell plasmodesma; host cytoskeleton RNA binding Odontoglossum ringspot virus Host cell junction Host cytoplasm Host cytoskeleton RNA-binding Transport Viral movement protein MGRLRFVVLL MGRLRFVVLLSIFPIKTFSEPCSTMALVLRDSIKISEFINLSASEKLLPSALTAVKSVRISKVDKII... |
endocytosis involved in viral entry into host cell virion attachment to host cell | host cell nucleus; T=25 icosahedral viral capsid | structural molecule activity | Porcine adenovirus A serotype 3 | Capsid protein Host nucleus Host-virus interaction Late protein T=25 icosahedral capsid protein Viral attachment to host cell Viral penetration into host cytoplasm Virion Virus endocytosis by host Virus entry into host cell | MRRMMPAAPP | MRRMMPAAPPQGASPPPSYESVVGSSLTEPLYVPPRYLGPTEGRNSIRYSQLPPLYDTTKIYLIDNKSADIASLNYQNNHSDFLTSVVQNSDFTPMEASTQTINLDERSRWGGEFKSILTTNIPNVTQYMFSNSFRVRLMSARDKETNAPTYEWFTLTLPEGNFSDIAVIDLMNNAIVENYLAVGRQQGVKEEDIGVKIDTRNFRLGYDPETKLVMPGSYTNMAFHPDVVLAPGCAIDFTFSRLNNLLGIRKRYPYQEGFMLTYEDLAGGNIPALLDLTTYDQENSSTIKPLKQDSKGRSYHVGEDPEAGDTFTYYRSWY... | endocytosis involved in viral entry into host cell virion attachment to host cell host cell nucleus; T=25 icosahedral viral capsid structural molecule activity Porcine adenovirus A serotype 3 Capsid protein Host nucleus Host-virus interaction Late protein T=25 icosahedral capsid protein Viral attachment to host cell V... |
potassium ion transport protein complex oligomerization virus-mediated pore formation in host cell membrane | host cell membrane; membrane | monoatomic ion channel activity | Paramecium bursaria Chlorella virus 1 | Glycoprotein Ion channel Ion transport Membrane Reference proteome Transmembrane Transmembrane helix Transport Viral ion channel | MLVFSKFLTR | MLVFSKFLTRTEPFMIHLFILAMFVMIYKFFPGGFENNFSVANPDKKASWIDCIYFGVTTHSTVGFGDILPKTTGAKLCTIAHIVTVFFIVLTL | potassium ion transport protein complex oligomerization virus-mediated pore formation in host cell membrane host cell membrane; membrane monoatomic ion channel activity Paramecium bursaria Chlorella virus 1 Glycoprotein Ion channel Ion transport Membrane Reference proteome Transmembrane Transmembrane helix Transport Vi... |
histidine biosynthetic process | cytoplasm | ATP binding phosphoribosyl-ATP diphosphatase activity | Burkholderia multivorans | Amino-acid biosynthesis ATP-binding Cytoplasm Histidine biosynthesis Hydrolase Nucleotide-binding Reference proteome | MTQSTEDTLL | MTQSTEDTLLRLAGVIDSRKGGDPEQSYVSRLFHKGDDAVLKKIGEEATEVVLAAKDVRQGGAPSALVGEVADLWFHCLVMLSHFDLSPADVIAELERREGLSGIEEKALRKRREREANGG | histidine biosynthetic process cytoplasm ATP binding phosphoribosyl-ATP diphosphatase activity Burkholderia multivorans Amino-acid biosynthesis ATP-binding Cytoplasm Histidine biosynthesis Hydrolase Nucleotide-binding Reference proteome MTQSTEDTLL MTQSTEDTLLRLAGVIDSRKGGDPEQSYVSRLFHKGDDAVLKKIGEEATEVVLAAKDVRQGGAPSALVGEVA... |
histidine biosynthetic process | cytoplasm | 1-(5-phosphoribosyl)-5-imidazole-4-carboxamide isomerase activity | Burkholderia multivorans | Amino-acid biosynthesis Cytoplasm Histidine biosynthesis Isomerase Reference proteome | MLLIPAIDLK | MLLIPAIDLKDGQCVRLKQGDMDQATIFSEDPAAMARKWVDLGARRLHLVDLNGAFAGKPKNLDAIEAILDEVGDEIPVQLGGGIRSLETIEKYLDAGLSYVIIGTAAVKDPGFLRDACTAFQGNIIVGLDAKDGKVATDGWSKLTGHEVIDLAQKFEDYGVESIVYTDIGRDGMLQGINIDATVKLAQAVGIPVIASGGLSNLEDIDKLCEVEEEGVEGVICGRAIYSGDLDFAAAQRRADELNGELDDA | histidine biosynthetic process cytoplasm 1-(5-phosphoribosyl)-5-imidazole-4-carboxamide isomerase activity Burkholderia multivorans Amino-acid biosynthesis Cytoplasm Histidine biosynthesis Isomerase Reference proteome MLLIPAIDLK MLLIPAIDLKDGQCVRLKQGDMDQATIFSEDPAAMARKWVDLGARRLHLVDLNGAFAGKPKNLDAIEAILDEVGDEIPVQLGGGIRSLETI... |
histidine biosynthetic process | cytoplasm | imidazoleglycerol-phosphate dehydratase activity | Burkholderia multivorans | Amino-acid biosynthesis Cytoplasm Histidine biosynthesis Lyase Reference proteome | MRVAEVVRNT | MRVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHAYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL | histidine biosynthetic process cytoplasm imidazoleglycerol-phosphate dehydratase activity Burkholderia multivorans Amino-acid biosynthesis Cytoplasm Histidine biosynthesis Lyase Reference proteome MRVAEVVRNT MRVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHAYVPLDEALSRVVIDFSGR... |
histidine biosynthetic process | cytoplasm | ATP binding ATP phosphoribosyltransferase activity | Burkholderia multivorans | Amino-acid biosynthesis ATP-binding Cytoplasm Glycosyltransferase Histidine biosynthesis Nucleotide-binding Reference proteome Transferase | MTAPLTLALS | MTAPLTLALSKGRIFEETLPLLAAAGVQVAEDPETSRKLILPTTDPNLRVIIVRASDVPTYVEYGAADFGVAGKDVLVEHGGSGLYQPIDLNIARCRMSVAVPAGFDYANAVRQGARLRVATKYVETAREHFAAKGVHVDLIKLYGSMELAPLVGLADAIVDLVSSGGTLKANNLVEVEEIMAISSRLVVNQAALKLKRAALKPFLDAFERASQNGV | histidine biosynthetic process cytoplasm ATP binding ATP phosphoribosyltransferase activity Burkholderia multivorans Amino-acid biosynthesis ATP-binding Cytoplasm Glycosyltransferase Histidine biosynthesis Nucleotide-binding Reference proteome Transferase MTAPLTLALS MTAPLTLALSKGRIFEETLPLLAAAGVQVAEDPETSRKLILPTTDPNLRVIIV... |
translation | ribonucleoprotein complex; ribosome | structural constituent of ribosome | Aster yellows phytoplasma | Ribonucleoprotein Ribosomal protein | MKLITYVKEG | MKLITYVKEGESIDRVLKKCKQKFDKARIIRKLRERQQYIKPSERKRKILAKAKYREFRKLLADD | translation ribonucleoprotein complex; ribosome structural constituent of ribosome Aster yellows phytoplasmaRibonucleoprotein Ribosomal protein MKLITYVKEG MKLITYVKEGESIDRVLKKCKQKFDKARIIRKLRERQQYIKPSERKRKILAKAKYREFRKLLADD |
translation | cytoplasm; ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Aster yellows phytoplasma | Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MKKKYTIRKK | MKKKYTIRKKIFGFLEKPRVSIFRSNKHIYAQVIDDYKGNTLISASSKKLLKFYKKRREKKITKKELSYKIGNLLGKIIKSYGISKILFDRNGYIYHGRVKALAKGLRNVGLQF | translation cytoplasm; ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Aster yellows phytoplasmaRibonucleoprotein Ribosomal protein RNA-binding rRNA-binding MKKKYTIRKK MKKKYTIRKKIFGFLEKPRVSIFRSNKHIYAQVIDDYKGNTLISASSKKLLKFYKKRREKKITKKELSYKIGNLLGKIIKSYGISKILFDRNGYIYHGRVKALAKGLRNVGLQF |
dicarboxylic acid transport | plasma membrane | symporter activity | Pseudomonas chlororaphis | Cell inner membrane Cell membrane Membrane Symport Transmembrane Transmembrane helix Transport | MTTRQPLYKS | MTTRQPLYKSLYFQVIVAIAIGILLGHFYPQTGVALKPLGDGFIKLIKMVIAPIIFCTVVSGIAGMQNMKSVGKTGGYALLYFEIVSTIALLIGLVVVNVVQPGNGMHIDVSTLDASKVAAYVTAGKDQSIVGFILNVIPNTIVGAFANGDILQVLMFSVIFGFALHRLGAYGKPVLDFIDRFAHVMFNIINMIMKLAPIGALGAMAFTIGAYGVGSLVQLGQLMICFYITCVLFVLVVLGAICRAHGFSVLKLIRYIREELLIVLGTSSSESALPRMLIKMERLGAKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQ... | dicarboxylic acid transport plasma membrane symporter activity Pseudomonas chlororaphis Cell inner membrane Cell membrane Membrane Symport Transmembrane Transmembrane helix Transport MTTRQPLYKS MTTRQPLYKSLYFQVIVAIAIGILLGHFYPQTGVALKPLGDGFIKLIKMVIAPIIFCTVVSGIAGMQNMKSVGKTGGYALLYFEIVSTIALLIGLVVVNVVQPGNGMHIDVSTLDASKVAAYVTAG... |
translation | ribonucleoprotein complex; ribosome | rRNA binding structural constituent of ribosome | Vibrio anguillarum | Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding | MPRVKRGVQA | MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVTKAGQYAYRARRTKKRQFRQLWIARINAASRQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKTAL | translation ribonucleoprotein complex; ribosome rRNA binding structural constituent of ribosome Vibrio anguillarum Ribonucleoprotein Ribosomal protein RNA-binding rRNA-binding MPRVKRGVQA MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVTKAGQYAYRARRTKKRQFRQLWIARINAASRQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKTAL |
protein folding | cytoplasm | adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding | Lactobacillus acidophilus | Chaperone Cytoplasm Reference proteome Stress response | MSKEEFPSEK | MSKEEFPSEKNLDKEENTSKPKKAVKKEAAKGEETKKNNENQKLAKEIADLKEKNKDLEDKYLRSEAEIQNMQNRYTKERAQLIKYESQSLAKDVLPAMDNLERALSVEADDDVSKQLKKGVQMTLDALVKAMKDHGVVEIEADGVKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVVAQ | protein folding cytoplasm adenyl-nucleotide exchange factor activity protein homodimerization activity protein-folding chaperone binding Lactobacillus acidophilus Chaperone Cytoplasm Reference proteome Stress response MSKEEFPSEK MSKEEFPSEKNLDKEENTSKPKKAVKKEAAKGEETKKNNENQKLAKEIADLKEKNKDLEDKYLRSEAEIQNMQNRYTKERAQLIKYESQSL... |
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