text stringlengths 3 8.33k | repo stringclasses 52
values | path stringlengths 6 141 | language stringclasses 35
values | sha stringlengths 64 64 | chunk_index int32 0 273 | n_tokens int32 1 896 |
|---|---|---|---|---|---|---|
A,B) and (B,A) in edge_batch
- Test: self-links excluded (chunk_id == sim_id skipped)
- Test: duplicate edges deduplicated within a scroll batch before write
- Test: resume from checkpoint skips already-processed scroll pages
- Test: empty collection returns 0 edges
</behavior>
<action>
Rewrite `src... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-01-PLAN.md | Markdown | 112aa56c084bd9a61fe47a557a3554f91cafa025a9620e2e9098f982d19857ed | 2 | 896 |
verification>
<success_criteria>
- search_similar_with_modality returns (chunk_id, score, modality) tuples from Qdrant
- Similarity engine creates bidirectional SIMILAR_TO edges with cross_modal flag
- Checkpoint file persisted after each Neo4j batch write, cleared on completion
- Resume from checkpoint skips already-... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-01-PLAN.md | Markdown | e312571b518e2669a6c3ced9c98c54a16231ebe92dbab694872d03dc27aaeffb | 3 | 101 |
---
phase: 06-graph-linking-orchestrator
plan: 01
subsystem: graph
tags: [qdrant, neo4j, similarity, checkpoint, tdd, python]
requires:
- phase: 05-embedding-storage
provides: QdrantStore, Neo4jStore with create_similarity_edges_batch
provides:
- QdrantStore.search_similar_with_modality returning (chunk_id, s... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-01-SUMMARY.md | Markdown | 0fc4bd458862770978ebcc0943a92132d7cb1ea71ab6bb212a9fcab918d12017 | 0 | 896 |
unit/test_graph/test_similarity.py` - 19 tests covering all behaviors (TDD, 297+ lines)
## Decisions Made
- `search_similar_with_modality` passes `with_payload=True` to `query_points` so modality is read from the same response — zero extra round-trips
- Checkpoint path defaults to `settings.cache_dir / "similarity" /... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-01-SUMMARY.md | Markdown | ef266c0e5733d4fc7825a865d6a64aedf01d645a745c94fda260da4a437d0f42 | 1 | 372 |
---
phase: 06-graph-linking-orchestrator
plan: 02
type: execute
wave: 1
depends_on: []
files_modified:
- src/jku_kb/graph/seed_edges.py
- src/jku_kb/graph/taxonomy.py
- src/jku_kb/graph/next_chunk.py
- src/jku_kb/storage/neo4j.py
- tests/unit/test_graph/test_seed_edges.py
- tests/unit/test_graph/test_taxono... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-PLAN.md | Markdown | 09657f2468ce4ba6f714e970c99e6dd99930ab88e37e8713ecc3dec5b4019321 | 0 | 896 |
Domain, link IN_DOMAIN
```
From src/jku_kb/graph/taxonomy.py:
```python
class TaxonomyAssigner:
def assign_topics(self, chunk: Chunk) -> list[str]:
# Returns topic names matching keywords in chunk title/text
async def assign_and_link(self, chunk: Chunk, neo4j_store: Any) -> list[str]:
# Assign... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-PLAN.md | Markdown | 5ed5bcfbfe58e7ea9deb9cb365e52d25a136f7a3bc50879047fe00bdd00cb488 | 1 | 896 |
py contains `create_source_structural_edges_batch`
- src/jku_kb/graph/seed_edges.py does NOT contain `create_structural_edge(` (old per-item call removed)
- tests/unit/test_graph/test_seed_edges.py contains `test_insert_seed_edges`
- tests/unit/test_graph/test_seed_edges.py contains `test_skip_empty_ids`
... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-PLAN.md | Markdown | 6211b341c723a6689c166c160c86068c16fd8720bed143403702045bc469b74a | 2 | 896 |
`
Add `from jku_kb.models import Chunk, Modality` at top of taxonomy.py (Modality import needed).
2. Create `src/jku_kb/graph/next_chunk.py`:
```python
"""NEXT_CHUNK sequential edge builder."""
from __future__ import annotations
from collections import defaultdict
from typing import Any
from jku_kb.logging import... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-PLAN.md | Markdown | 3b6f6ad544f5ae3b132e4c43fa3959c3143df10907243038debb39c9c0bd9949 | 3 | 896 |
/unit/test_graph/test_taxonomy.py contains `test_assign_all_chunks`
- tests/unit/test_graph/test_next_chunk.py contains `test_build_next_chunk_edges`
- tests/unit/test_graph/test_next_chunk.py contains `test_single_chunk_skipped`
- tests/unit/test_graph/test_visualization.py contains `test_export_graphml`
... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-PLAN.md | Markdown | 19b857c2ee3f6519f7a0f4e6325e668ee2f214a4fc1d41193f2c58e4936c91e8 | 4 | 247 |
---
phase: 06-graph-linking-orchestrator
plan: 02
subsystem: graph
tags: [neo4j, graphml, cypher, unwind, taxonomy, seed-edges, next-chunk, visualization]
requires:
- phase: 05-embedding-storage
provides: Neo4jStore with create_next_chunk_edges, link_chunk_to_topic, create_topic_node methods
provides:
- Fixed... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-SUMMARY.md | Markdown | 564c5812f71d258c0c50dfb3d0bdad8d3a5cfc5f12e5603b5edc5a75163f9694 | 0 | 896 |
UNWIND MERGE Source nodes
- `src/jku_kb/graph/taxonomy.py` - Added assign_all_chunks(), added Modality import
- `src/jku_kb/graph/next_chunk.py` - New file: build_next_chunk_edges() with defaultdict grouping
- `tests/unit/test_graph/__init__.py` - New package init
- `tests/unit/test_graph/test_seed_edges.py` - 9 tests ... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-02-SUMMARY.md | Markdown | 4c54a75659a92988d7ed3685eb13307bfb6079e54bf08f0e0799b6d314602f05 | 1 | 781 |
---
phase: 06-graph-linking-orchestrator
plan: 03
type: execute
wave: 2
depends_on: ["06-01", "06-02"]
files_modified:
- src/jku_kb/orchestrator.py
- tests/unit/test_orchestrator.py
autonomous: true
requirements: [PIPE-01, PIPE-02, PIPE-06]
must_haves:
truths:
- "run_all() calls all 5 phases in sequence: dis... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-PLAN.md | Markdown | a16abeb5fb6f4dc4d889605ed8cb12f695f26dd496ca001a3e6038a6392b671b | 0 | 896 |
(self, source_ids=None) -> dict[str, int]
async def run_phase_fetch(self, source_ids=None, max_items=None) -> dict[str, dict[str, int]]
async def run_phase_chunk(self, source_ids=None) -> dict[str, int]
async def run_phase_embed(self, source_ids=None) -> dict[str, int]
async def run_phase_link(self) -> ... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-PLAN.md | Markdown | a06f507c281be2cd08287e7bc9358d7e01b58e6b4380800b2f5bc64b05ca34a8 | 1 | 896 |
done after successful embed
- Call progress_callback per batch
5. Update `run_phase_link()` to wire all four graph operations:
```python
async def run_phase_link(
self,
mode: str = "all",
progress_callback: ProgressCallback = None,
) -> dict[str, int]:
from jku_kb.graph.next_chunk import build_next_... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-PLAN.md | Markdown | 5bb98e16106fe7401911f1cfd23ca5d59ce41d9943948898a3de5bb6f02123d6 | 2 | 896 |
retries failed items
- Progress callback fires per processed item
- run_phase_link wires similarity, seed edges, taxonomy, NEXT_CHUNK with mode selection
- run_all calls all 5 phases in order
- All unit tests pass
</success_criteria>
<output>
After completion, create `.planning/phases/06-graph-linking-orchestrator/06-... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-PLAN.md | Markdown | 22e23e651d1ddcac9c1bdf4a59b2e7efa2eb11595c316d7c4889be37d5fc4488 | 3 | 74 |
---
phase: 06-graph-linking-orchestrator
plan: "03"
subsystem: orchestrator
tags: [orchestrator, resumability, manifest, progress-callback, graph-linking, jsonl, pipeline]
requires:
- phase: 06-01
provides: compute_similarity_backlinks with checkpoint support
- phase: 06-02
provides: build_next_chunk_edges... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-SUMMARY.md | Markdown | a6f04c1605fb81377aefb064f697c41150dee928d6d2e76002a63e93061775d5 | 0 | 896 |
jku_kb/orchestrator.py` — Phase manifest helpers, ProgressCallback type alias, resumability in chunk/embed phases, run_phase_link full wiring, module-level imports
- `tests/unit/test_orchestrator.py` — 16 tests: _load_done_ids, _mark_done, _phase_manifest_path, chunk/embed skip resumability, run_all order, progress_cal... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-03-SUMMARY.md | Markdown | b21a59a478eac6c0b5474784da98d632e2057ce9c3bc8fc1862f762395c93864 | 1 | 617 |
---
phase: 06-graph-linking-orchestrator
plan: 04
type: execute
wave: 3
depends_on: ["06-03"]
files_modified:
- src/jku_kb/cli.py
- tests/unit/test_cli.py
autonomous: true
requirements: [PIPE-03, PIPE-04, PIPE-05]
must_haves:
truths:
- "jku-kb run --phase all executes full pipeline with Rich progress bars"
... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-PLAN.md | Markdown | d6c0b00f3519e7845b9370b31406c52964e82d99643b86cc32cf661b9ccdf71c | 0 | 896 |
) -> int # Total vector count
```
From src/jku_kb/cli.py (current):
```python
app = typer.Typer(name="jku-kb")
console = Console()
# Commands: run, discover, fetch, chunk, embed, link, status, probe, export, stats
```
Rich Progress pattern (from research):
```python
from rich.progress import Progress, SpinnerColumn,... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-PLAN.md | Markdown | 228c635b3a40ecc28fd507dc11bce1985598c5fc03f59f1e4cbc95992d0a39b6 | 1 | 896 |
= typer.Option(20, help="Top-K neighbors for similarity"),
threshold: float = typer.Option(0.75, help="Cosine similarity threshold"),
):
settings = get_settings()
settings.similarity_top_k = top_k
settings.similarity_threshold = threshold
setup_logging(settings.log_level)
from jku_kb.orchestrat... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-PLAN.md | Markdown | 97b2641b31194e281580508933bb025ef3aa0ef387ec44904738894e5279383a | 2 | 896 |
}
except Exception as e:
stats_data["neo4j_error"] = str(e)
try:
async with QdrantStore(settings) as qdrant:
stats_data["qdrant_points"] = await qdrant.count()
except Exception as e:
stats_data["qdrant_error"] = str(e)
return stats_da... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-PLAN.md | Markdown | b0f51d3fefb2aec607de6a96528899aeccf826570a8658978317d27bc319c674 | 3 | 896 |
rec['source_id']} has no chunks linked via FROM_SOURCE",
})
return issues
issues = _run(_validate())
if not issues:
console.print("[green]No integrity issues found.[/green]")
return
table = Table(title=f"Integrity Issues ({len(issues)})")
table.add_column(... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-PLAN.md | Markdown | a6acfcb728711012743bc91fec383c670a339e57bc177c0d55eb70cf1d9e74ae | 4 | 874 |
---
phase: 06-graph-linking-orchestrator
plan: 04
subsystem: cli
tags: [typer, rich-progress, neo4j-cypher, qdrant, cli, data-integrity]
# Dependency graph
requires:
- phase: 06-graph-linking-orchestrator (plan 03)
provides: "PipelineOrchestrator with ProgressCallback, run_phase_link mode wiring"
provides:
- "... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-SUMMARY.md | Markdown | 37f7dbfccf74902f553a16e47ea94cb5047fec58ea81e7292732e192c5fcab13 | 0 | 896 |
to `jku_kb.storage.neo4j.Neo4jStore`, `jku_kb.storage.qdrant.QdrantStore`, `jku_kb.storage.local_fs.LocalFileStore`
- **Files modified:** tests/unit/test_cli.py
- **Verification:** All 10 tests pass
- **Committed in:** a365d03
---
**Total deviations:** 1 auto-fixed (1 bug)
**Impact on plan:** Auto-fix necessary for t... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-04-SUMMARY.md | Markdown | b6eb725b7e1d4c6db2311697056b7a2196e5f7c4aa333f6ee62493fd1bfed67a | 1 | 204 |
# Phase 6: Graph Linking & Orchestrator - Context
**Gathered:** 2026-03-20
**Status:** Ready for planning
<domain>
## Phase Boundary
Build the similarity engine, seed edges, taxonomy assignment, NEXT_CHUNK sequential edges, pipeline orchestrator with per-phase resumability, and full CLI interface with progress track... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-CONTEXT.md | Markdown | 367404556afefaace470de800ce788aa55a16d1f2925c5bc13c3d08e33f99b6d | 0 | 896 |
fetch/chunk/embed/link/status/probe/export/stats
### Storage (Phase 5 outputs)
- `src/jku_kb/storage/qdrant.py` — QdrantStore with search_similar(), batch upsert, payload indexes
- `src/jku_kb/storage/neo4j.py` — Neo4jStore with create_similarity_edges_batch(), UNWIND batching
- `src/jku_kb/embedders/batch.py` — Batch... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-CONTEXT.md | Markdown | 689a2a475cc4b2d56ed6792c8be9a2c25e75ef805557797fa37d5382b941301e | 1 | 496 |
# Phase 6: Graph Linking & Orchestrator - Research
**Researched:** 2026-03-20
**Domain:** Graph linking (Qdrant KNN + Neo4j edges), pipeline resumability, Rich CLI progress
**Confidence:** HIGH
<user_constraints>
## User Constraints (from CONTEXT.md)
### Locked Decisions
**Similarity engine (LINK-01, LINK-02)**
- C... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | e50ca21b3d2f734913ef503514c12386062286c3b4b33abe2deea7338b483900 | 0 | 896 |
| LINK-05 | NEXT_CHUNK edges created for sequential ordering within documents/videos | Neo4jStore.create_next_chunk_edges() exists; needs driver code in run_phase_link() querying chunks by item_id sorted by chunk_index |
| LINK-06 | Visualization export to GraphML for Gephi / Neo4j Bloom | graph/visualization.py export... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | c9f2ef99f1b142b0f9c4650e521ad4619bba999ee42ca74c3dfcb6d29faf8a73 | 1 | 896 |
Recommended Project Structure
```
src/jku_kb/
├── graph/
│ ├── similarity.py # Add checkpoint + cross-modal fix
│ ├── seed_edges.py # Add batch optimization
│ ├── taxonomy.py # Add pipeline iteration method
│ ├── next_chunk.py # NEW: NEXT_CHUNK edge builder
│ └── visualization.py # Alr... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | 2628c91f325ec474933edb1b6b95431dfc47f9b8cb7a072d556333fa3eb63813 | 2 | 896 |
Progress(
SpinnerColumn(),
TextColumn("[bold blue]{task.description}"),
BarColumn(),
TaskProgressColumn(),
TimeElapsedColumn(),
)
```
**Threading note:** Rich Progress must be used as a context manager (`with progress:`) and is not thread-safe. Since the pipeline is asyncio-... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | e86331b746b88e2e0f21f0bfa738c39d4ec3d5082a70928f910a567950d86e50 | 3 | 896 |
") or 0,
chunk_total=record.get("chunk_total") or 1,
title=record.get("title") or "",
)
```
### Pattern 7: Seed Edges Batch Optimization
**What:** Current `insert_seed_edges()` calls `create_structural_edge()` per edge (one Neo4j round-trip each). Add a `create_structural_edges_batch()` method usin... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | e00499aa5c686a09937bda790d3b567204d50bb5e6f5c7a98152511d2b527b4c | 4 | 896 |
Offset Type
**What goes wrong:** Qdrant scroll offset is `str | None` (a UUID string), not an integer. Persisting it as integer or reconstructing from `processed` count will break.
**Why it happens:** The AsyncQdrantClient.scroll() `offset` parameter accepts `PointId | None`. For UUID-based collections, it's a UUID str... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | 4e819e472a598eecfef5c6002c3dadb4217dd61ef15a3acfe70ac94e2822dbab | 5 | 896 |
:** Tests that call orchestrator methods directly will trigger Rich progress output, polluting test logs or hanging on non-TTY terminals.
**Why it happens:** Progress bars render to stdout/stderr.
**How to avoid:** Use a callback/progress pattern — orchestrator methods accept an optional `progress_callback: Callable[[s... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | 7046bd7d72c13326aacec17d15f4cb8dba5067e8ac2a5ecf1536cccaffb602ea | 6 | 896 |
, progress=progress))
# Summary table after progress completes
table = Table(title="Chunking Results")
...
```
### Phase Manifest Skip Pattern
```python
# In run_phase_chunk() — extends existing pattern
async def run_phase_chunk(
self,
source_ids: list[str] | None = None,
progress: Progress | ... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | c1b6f4827aea258d0b9ed13c1640b86022b6413873f962bd4fb22b11ab60eff5 | 7 | 896 |
-------------|------------------|--------------|--------|
| Rich `print()` for progress | `rich.progress.Progress` context manager | Rich 10.0+ | Live-updating bars without scroll |
| Manual Qdrant pagination | `scroll()` with `next_offset` cursor | qdrant-client 1.0+ | No need to track page numbers |
| Neo4j per-row i... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | cf4e8ec6719607048ebb513f2df443798ad645083929b3ed5a3e096a9c7ffbde | 8 | 896 |
-x` | Wave 0 |
| LINK-03 | Seed edges loaded and inserted as STRUCTURALLY_LINKED on Source nodes | unit | `uv run pytest tests/unit/test_graph/test_seed_edges.py -x` | Wave 0 |
| LINK-04 | Taxonomy assigner assigns topics from title keywords | unit | `uv run pytest tests/unit/test_graph/test_taxonomy.py -x` | Wave 0 |
... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | 78dd629088987085575bb7ed4ec6015d643c6263d239d1f0c512466e0f0cba19 | 9 | 896 |
json` inspection — source IDs in file vs pipeline source IDs (ID mismatch finding)
- `data/taxonomy.json` inspection — 27 topics across 13 domains
- `pyproject.toml` inspection — all dependencies confirmed installed, no new deps needed
## Metadata
**Confidence breakdown:**
- Standard stack: HIGH — all libraries in py... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-RESEARCH.md | Markdown | 1201937cfeb7584eced31331868180105acdea8e717ace2e871ec9a6c2902022 | 10 | 161 |
---
phase: 6
slug: graph-linking-orchestrator
status: draft
nyquist_compliant: false
wave_0_complete: false
created: 2026-03-20
---
# Phase 6 — Validation Strategy
> Per-phase validation contract for feedback sampling during execution.
---
## Test Infrastructure
| Property | Value |
|----------|-------|
| **Framew... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VALIDATION.md | Markdown | 2fc53d86d04f8f47d0728369dbefb6a15c7fba85acd8410d6e8c575351fb8a3d | 0 | 896 |
tests/unit/test_cli.py::test_run_per_source -x` | ❌ W0 | ⬜ pending |
| 06-04-03 | 04 | 2 | PIPE-05 | unit | `uv run pytest tests/unit/test_cli.py::test_stats_command -x` | ❌ W0 | ⬜ pending |
*Status: ⬜ pending · ✅ green · ❌ red · ⚠️ flaky*
---
## Wave 0 Requirements
- [ ] `tests/unit/test_graph/__init__.py` — packa... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VALIDATION.md | Markdown | acb639021317cdc3d22f54a974ea392330705ccf686dc41e2895e48539823340 | 1 | 463 |
---
phase: 06-graph-linking-orchestrator
verified: 2026-03-20T18:30:00Z
status: passed
score: 12/12 must-haves verified
re_verification: false
---
# Phase 6: Graph Linking & Orchestrator Verification Report
**Phase Goal:** Harden the similarity engine (checkpoint + cross-modal), wire all graph linking operations, add... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VERIFICATION.md | Markdown | 6c513395d0b20ad207f22cdc65dd4ed26119e5f429c904d2ae6d3f41c77ec0d9 | 0 | 896 |
| CLI uses Rich progress bars and provides stats/validate commands | VERIFIED | `cli.py` L10,25-34: `_make_progress()` with SpinnerColumn/BarColumn/etc; L319-385: `stats` command with Neo4j/Qdrant queries; L389-463: `validate` command with integrity checks |
**Score:** 12/12 truths verified
### Required Artifacts
| ... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VERIFICATION.md | Markdown | 85ded0a5c238c111826967b5b86206b62d75369e8fa3647d3043aa67a7c0d7e5 | 1 | 896 |
validate |
### Key Link Verification
| From | To | Via | Status | Details |
|------|----|-----|--------|---------|
| `similarity.py` | `qdrant.py` | `search_similar_with_modality` call | WIRED | `similarity.py` L111: `await qdrant.search_similar_with_modality(...)` |
| `similarity.py` | `neo4j.py` | `create_similarit... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VERIFICATION.md | Markdown | a793f4a1d2a22f1be2c8ff1e5c6b1b03647ec1af54ac2daf74dec65cf70c5aa7 | 2 | 896 |
(item_id, source_id), creates NEXT_CHUNK edges in order |
| LINK-06 | 06-02 | GraphML visualization export | SATISFIED | `visualization.py` exports Chunk nodes and SIMILAR_TO edges as valid GraphML XML with attributes |
| PIPE-01 | 06-03 | 5-phase orchestrator | SATISFIED | `orchestrator.py` `run_all()` calls discover,... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VERIFICATION.md | Markdown | 83ff0ce94c30a131a4a86c9c70159746fba7f47a1e56e4b710f1fd13a06beac6 | 3 | 896 |
PIPE-01 through PIPE-06) are satisfied with implementation evidence.
The phase produced:
- 8 production source files (similarity.py, qdrant.py, seed_edges.py, taxonomy.py, next_chunk.py, visualization.py, orchestrator.py, cli.py)
- 7 test files with ~90 total unit tests
- 10 verified git commits with conventional comm... | jku-encyclopedia | .planning/milestones/v1.0-phases/06-graph-linking-orchestrator/06-VERIFICATION.md | Markdown | c8591f21829d9de3a47902f32f33eb838aa3c6a19f2751423c6a8f9539697c4e | 4 | 100 |
---
phase: 07-testing-quality
plan: 01
type: execute
wave: 1
depends_on: []
files_modified:
- src/jku_kb/**/*.py
- tests/**/*.py
- src/stubs/ffmpeg/__init__.pyi
- src/stubs/feedparser/__init__.pyi
- pyproject.toml
- Makefile
- tests/e2e/test_pipeline_smoke.py
autonomous: true
requirements: [QUAL-02]
must... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-PLAN.md | Markdown | cb92300626a16295a6f8124a80b9deda6afd47c7b2ae39e8cce9e82001fcca95 | 0 | 896 |
behavior (e.g., removing unused variables that have side effects). Revert any unsafe fix that changes semantics.
Step 3 - Manually fix remaining non-auto-fixable violations (~30 errors):
Common remaining categories:
- B006 (mutable default arguments): change `def f(x=[])` to `def f(x=None); if x is None: x = []`
- N80... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-PLAN.md | Markdown | 25199037e70f7d6c6f7d0da7d96829c45ea19dd8b105e096ca2b9182c1db0f5d | 1 | 896 |
type stub for feedparser covering project usage."""
from typing import Any
class FeedParserDict(dict[str, Any]):
bozo: int
entries: list[dict[str, Any]]
feed: dict[str, Any]
status: int
def parse(url_file_stream_or_string: str, **kwargs: Any) -> FeedParserDict: ...
```
**C. Update pyproject.toml - a... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-PLAN.md | Markdown | 39a15f4dfa878de6a5609e259f6a7efb1ba8c1ded4ce7f2abfd7b407272931de | 2 | 896 |
strict src/jku_kb/chunkers/video_chunker.py 2>&1 | grep -c "import-untyped" || echo "0 import-untyped errors"
```
</verification>
<success_criteria>
1. `uv run ruff check src/ tests/` exits 0 (zero violations)
2. `src/stubs/ffmpeg/__init__.pyi` and `src/stubs/feedparser/__init__.pyi` exist with correct content
3. `pyp... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-PLAN.md | Markdown | 2b14b69460bc701506797cab09d0f11e991440ba4a611893b7958cd0c20e09b4 | 3 | 171 |
---
phase: 07-testing-quality
plan: 01
subsystem: testing
tags: [ruff, mypy, type-stubs, branch-coverage, lint, formatting]
# Dependency graph
requires:
- phase: 06-graph-linking
provides: "All source and test code to lint and type-check"
provides:
- "Zero ruff violations across all source and test files"
- ... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-SUMMARY.md | Markdown | 46c75dd53f28a414b6e780776e7f7ab6898651ec667f63fa241e96980c331277 | 0 | 896 |
Task 1 to establish consistent code style baseline
- Used default-argument binding for B023 (loop variable capture) in probe.py and orchestrator.py rather than restructuring loops
## Deviations from Plan
### Auto-fixed Issues
**1. [Rule 1 - Bug] Added noqa for ffmpeg stub A001 shadowing**
- **Found during:** Task 2 ... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-01-SUMMARY.md | Markdown | 2a5acf2dbb70f18de21f61ba061e5ddb305dbc45ec3fc959c23b0fdffb81e5c9 | 1 | 447 |
---
phase: 07-testing-quality
plan: 02
type: execute
wave: 2
depends_on: [07-01]
files_modified:
- src/jku_kb/cli.py
- src/jku_kb/embedders/gemini.py
- src/jku_kb/scrapers/base.py
- src/jku_kb/storage/qdrant.py
- src/jku_kb/scrapers/web_crawl.py
- src/jku_kb/scrapers/pdf_fetch.py
- src/jku_kb/scrapers/ope... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | 7bc8ae9a0c80d8ab7451e36f2ef5b384568925c3b05776484a806a852663adc2 | 0 | 896 |
.md
@.planning/ROADMAP.md
@.planning/STATE.md
@.planning/phases/07-testing-quality/07-CONTEXT.md
@.planning/phases/07-testing-quality/07-RESEARCH.md
@.planning/phases/07-testing-quality/07-01-SUMMARY.md
</context>
<tasks>
<task type="auto">
<name>Task 1: Fix all mypy --strict errors across 14 source files</name>
... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | 18d88a5accb1fc6bff41c215cc707b946572fd79ea44db295d7d7e886a073370 | 1 | 896 |
` (or `if result is None: raise RuntimeError("embed_content returned None")`)
2. Fix `result.embeddings` access: add `assert result.embeddings is not None` before indexing `result.embeddings[0]`
3. Fix `embedding.values` access: add `assert embedding.values is not None` before using as list
4. Fix `file.name` (str | No... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | 9073a00047d2fb7231da353a980890d38079eae7f019f4d26c2bfbbb9339bf14 | 2 | 896 |
third-party lib with no way to type), document the reason in an inline comment.
Also verify tests still pass after changes:
```bash
uv run pytest -m "not live" -x -q
```
</action>
<verify>
<automated>uv run mypy --strict src/ && uv run pytest -m "not live" -x -q</automated>
</verify>
<acceptance_criteria>
... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | 916d90f4120a77bee1050e7b9f285e3ac8398d6b13647a442f17923a88b9e773 | 3 | 896 |
"""
```
Specific module docstrings to add:
- `src/jku_kb/__init__.py`: `"""JKU Knowledge Base — automated pipeline for scraping, chunking, embedding, and knowledge-graphing JKU Linz data."""`
- `src/jku_kb/chunkers/__init__.py`: `"""Chunker module providing modality-specific content chunking for the JKU pipeline."""`
... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | 16d2ffa2dcef1ea21261cb6ae6ac21023fea9462d2dbb318ad6268d248f3e99b | 4 | 896 |
(ast.ClassDef, ast.FunctionDef, ast.AsyncFunctionDef)):
if not node.name.startswith('_') and not ast.get_docstring(node):
missing.append(f'{p}:{node.lineno}: {node.name}')
if missing:
for m in missing: print(m)
sys.exit(1)
print('All public entities documented')
" && uv run pytest -m... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-PLAN.md | Markdown | f5a1499c5f76d898965b72dafbb6b250f3658f14bf87b174569ec966684e0baa | 5 | 651 |
---
phase: 07-testing-quality
plan: 02
subsystem: testing
tags: [mypy, type-safety, docstrings, google-style, strict-typing]
# Dependency graph
requires:
- phase: 07-testing-quality
provides: "Plan 01 type stubs (ffmpeg, feedparser) and ruff baseline"
provides:
- "Zero mypy --strict errors across 48 source fil... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-SUMMARY.md | Markdown | fa0818bf0547e68e674c66678a91229ea42a3b91de005c6786fa55df1dc0b42b | 0 | 896 |
exception, on_result docstring
- `src/jku_kb/models.py` - Docstrings on all 6 enum classes
- `src/jku_kb/config.py` - Docstrings on 3 computed properties
- `src/jku_kb/chunkers/audio_chunker.py` - chunk() docstring
- `src/jku_kb/chunkers/caption_chunker.py` - chunk() docstring
- `src/jku_kb/chunkers/code_chunker.py` - ... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-02-SUMMARY.md | Markdown | fbdbe2228608d22837d8df5defc0e7d55c6d0110368ac41011e27e008f741036 | 1 | 780 |
---
phase: 07-testing-quality
plan: 03
type: execute
wave: 2
depends_on: [07-01]
files_modified:
- tests/unit/test_orchestrator.py
- tests/unit/test_cli.py
- tests/unit/test_embedders/test_gemini.py
- tests/unit/test_storage/test_local_fs.py
- tests/unit/test_chunkers.py
- tests/unit/test_storage/test_neo4j... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-PLAN.md | Markdown | 515434b4b41ef1f3f820330ddabd0571200ac248b8ca6dbe1c1a093eb34b84f6 | 0 | 896 |
467)
- tests/unit/test_cli.py (existing 10 tests to understand current coverage)
- tests/conftest.py (shared fixtures: settings, mock_http_client)
- Run: uv run pytest --cov=jku_kb.orchestrator --cov=jku_kb.cli --cov-branch --cov-report=term-missing -m "not live" -q (to see exact missing lines)
</read_fir... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-PLAN.md | Markdown | f20d9dc12cd7bf85091eb511aaad7e4224792254a25e49785c6db65b89222445 | 1 | 896 |
patching, use the source module path (e.g., `jku_kb.storage.neo4j.Neo4jStore`) not the CLI module path, per established project convention from Phase 6.
After writing all tests, verify:
```bash
uv run pytest tests/unit/test_orchestrator.py tests/unit/test_cli.py -v -x
uv run pytest --cov=jku_kb.orchestrator --cov=jku_... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-PLAN.md | Markdown | 05b2d303b3a0a223caaa98d241b8e5f2f5831d0cae9c83a836ecd81b83028a48 | 2 | 896 |
for text/document/image, verify dimension dict returned
5. `test_probe_dimension_mismatch_raises` — Return different dimensions for different modalities, verify error
6. `test_embed_text_chunk_success` — Mock _call_embed_content, verify vector returned
7. `test_embed_text_chunk_retry_on_429` — Use tenacity testing util... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-PLAN.md | Markdown | 813dd27de22fc799bca67844c9914b9889fc59b9b9f96d5d1465461698105dfa | 3 | 896 |
70%)
- `uv run pytest --cov=jku_kb --cov-branch -m "not live" --cov-fail-under=80` exits 0 (aggregate 80%+ achieved)
- All new tests run without network access or Docker containers
</acceptance_criteria>
<done>All target modules at 75%+ branch coverage, aggregate branch coverage at 80%+, all tests passing</... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-PLAN.md | Markdown | c2e439c8cd09e9a1d70ec901a19865a340da098c7b1f10aa5a48e336f42a00d0 | 4 | 391 |
---
phase: 07-testing-quality
plan: 03
subsystem: testing
tags: [pytest, coverage, unit-tests, mocking, branch-coverage]
# Dependency graph
requires:
- phase: 07-01
provides: "Ruff lint baseline, branch coverage configuration, type stubs"
provides:
- "498 unit tests passing (up from 405)"
- "87.29% aggregate... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-SUMMARY.md | Markdown | ef8a61ff3978384b66b79e75c28d9d56e6a2f68410e48a280116f5344cfae668 | 0 | 896 |
**
- **Found during:** Task 2
- **Issue:** Initial test used _mark_fetched which doesn't exist; switched to _update_manifest_entry but ManifestEntry requires url field
- **Fix:** Added url= parameter to ManifestEntry constructor in both openalex and web_crawl fetch tests
- **Files modified:** tests/unit/test_scrapers/t... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-03-SUMMARY.md | Markdown | d30025fa3b593aa1c27adbdeec83b65fb894042678dc33fa453fef21c1db58ac | 1 | 236 |
---
phase: 07-testing-quality
plan: 04
type: execute
wave: 2
depends_on: [07-01]
files_modified:
- tests/integration/test_storage_roundtrip.py
- tests/integration/test_gemini_live.py
- tests/e2e/test_pipeline_smoke.py
- tests/conftest.py
autonomous: true
requirements: [TEST-02, TEST-03, TEST-04, TEST-05, QUAL-0... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | 4b036c99d614b09e47e0fcb661086cdd01e01ca5665fa5247054d1b14d4899d8 | 0 | 896 |
- src/jku_kb/models.py (Chunk, EmbeddingResult, Edge, Modality, EdgeType)
- src/jku_kb/config.py (Settings: qdrant_url, neo4j_uri, neo4j_user, neo4j_password, gemini_api_key)
- tests/integration/test_live_apis.py (existing live test patterns with @pytest.mark.live)
- tests/conftest.py (settings fixture)
... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | aefb34ce8cbe1ff36ee3cc694da1659cfd23da4cceb4d3bfc8ff1edaff1a9062 | 1 | 896 |
GEMINI_API_KEY environment variable.
"""
```
**TestGeminiLive** (all @pytest.mark.live):
1. `test_embed_text_returns_vector` — Create GeminiEmbedder, connect(), embed a short text string ("JKU Linz machine learning"), verify returned vector is list[float] with length > 0
2. `test_embed_text_dimension_consistent` — Emb... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | e53efdd932a9ea50cfc44f80f449b26a9c710b38fa2e0c3cf2d763dc1bcdcabc | 2 | 896 |
():
"""Mock GeminiEmbedder returning deterministic 768-dim vectors."""
from unittest.mock import AsyncMock, MagicMock
embedder = MagicMock()
embedder.connect = AsyncMock()
embedder.close = AsyncMock()
async def fake_embed(chunk):
# Deterministic vector based on chunk_id hash
imp... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | 923a7b1765ebb7f52be213ef4c0fd2c9989febebfe2cc8415611bdb8c78a4d70 | 3 | 896 |
*Verify embed:** Qdrant contains points for the smoke test source_ids
- **Verify link:** Neo4j contains Chunk nodes and FROM_SOURCE edges for smoke data
- **Cleanup:** Delete all smoke test data from Qdrant and Neo4j
2. **`test_pipeline_idempotent`** (@pytest.mark.live, @pytest.mark.slow):
- Run the same pipe... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | a29c4acc610acb2074a012c429568dbd903d2821a324e24d9303355f640493ec | 4 | 896 |
not live" -x -q` still passes
7. `uv run pytest tests/ --collect-only` collects all new tests without errors
</success_criteria>
<output>
After completion, create `.planning/phases/07-testing-quality/07-04-SUMMARY.md`
</output>
| jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-PLAN.md | Markdown | c3a92e6634b5a28893799d21fcac911436752fbd688480322198db0627f60e06 | 5 | 65 |
---
phase: 07-testing-quality
plan: 04
subsystem: testing
tags: [qdrant, neo4j, gemini, integration-tests, e2e, idempotency, docker, pytest]
requires:
- phase: 07-01
provides: lint baseline, branch coverage config, pytest markers
- phase: 05-embedding-storage
provides: QdrantStore, Neo4jStore, GeminiEmbedd... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-SUMMARY.md | Markdown | 351859ff13fc7d0da4cada8ea29a0809441b25eff1cd1db0fd6ce67bdf9de96f | 0 | 896 |
from config.py)
- `test_pipeline_4_modalities_chunked_correctly` intentionally excludes Docker — only tests real chunkers, making it runnable anywhere
- Unique prefix `_E2E_PREFIX = f"smoke_{uuid.uuid4().hex[:8]}"` ensures test collections/nodes don't collide across parallel test runs
- `mock_gemini_embedder` placed in... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-04-SUMMARY.md | Markdown | ee2e5d0a9c96327a37e331f933ebddaad438e6ebab37ed38e4549673765e8c33 | 1 | 298 |
# Phase 7: Testing & Quality - Context
**Gathered:** 2026-03-20
**Status:** Ready for planning
<domain>
## Phase Boundary
Bring the ~7000-line Python codebase to open-source release quality: 80%+ branch coverage, mypy --strict passing, ruff clean, Google-style docstrings on all public methods, idempotency verificati... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-CONTEXT.md | Markdown | 250626739936e7de64293ab6add58f0dec18a76ae265125d7e2ea017b9e39eac | 0 | 896 |
HTTP mocking (not pytest-httpx despite being in deps) — used consistently in scraper tests
- `MagicMock` (not AsyncMock) for Neo4j driver — established in Phase 5 tests
- `@pytest.mark.live` for tests hitting real APIs — separate from unit tests via `addopts = "-m 'not live'"`
- Docker compose for Qdrant (port 6333) an... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-CONTEXT.md | Markdown | f109df8840ab1c026538e48d7d7075db6ee4c48ad3c7ebf2723e58325f1270ec | 1 | 218 |
# Phase 7: Testing & Quality - Research
**Researched:** 2026-03-20
**Domain:** Python testing, type checking, linting, documentation, code quality
**Confidence:** HIGH
## Summary
Phase 7 brings a ~7000-line Python codebase (46 source files, 548-line orchestrator being the largest) from 74% branch coverage to 80%+, f... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | d54d901e9754c84a8cc22c1f74bde65e24a88aaec0a9c3aef26c4b08b3892ad2 | 0 | 896 |
, chunkers, dedup (no network) | Coverage data shows code_chunker at 38%, caption_chunker at 93%, text_chunker at 92%; dedup at 100%. Focus on code_chunker function-splitting paths |
| TEST-02 | Integration tests with live APIs (@pytest.mark.live) | 13 live test classes already exist covering OpenCast, GitHub, OpenAlex... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | e1a04113ab05216978ca74ed2e45d5f3bc0ebb7b01d7091ff1238ca2572f9b28 | 1 | 896 |
gap-filling
- `pytest-mock` -- unittest.mock is already used everywhere; switching adds inconsistency
## Architecture Patterns
### Current Test Structure (preserve it)
```
tests/
├── conftest.py # Shared fixtures: Settings, respx, PDFs, audio/video, VTT/SRT
├── e2e/
│ └── test_pipeline_smoke.py # E2E:... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | 49852652e46a71d6685922bef00ec2e01ffa8f2db2bb1eeb0b3ef4989a8d575f | 2 | 896 |
------|-------------|-------------|-----|
| Coverage gap identification | Manual line-by-line audit | `pytest --cov=jku_kb --cov-branch --cov-report=term-missing` | Automated, accurate, shows exact missing lines |
| HTTP mocking | Custom mock servers | respx (already established) | Project-wide consistency, intercepts ... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | efa6f9f8cfba9490d12c7e13a8d07bf78d8b064929c1c60afd8fb283f970ea2f | 3 | 896 |
`operator` errors on SDK return values.
### Pitfall 5: list Invariance with Qdrant Filter
**What goes wrong:** `list[FieldCondition]` is not assignable to `list[FieldCondition | IsEmptyCondition | ...]` because lists are invariant in Python typing.
**Why it happens:** mypy enforces type safety; `list[A]` is not `list[... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | a4d8dd80ae557532fcfac51125e3a299715a011bbaf5cc5cceb8e2fcd302b502 | 4 | 896 |
, url="http://x", title="T")
chunker = CodeChunker()
chunks = await chunker.chunk(item, path, tmp_path / "out")
assert len(chunks) > 1 # Should split into function-based chunks
```
### Minimal Type Stub for ffmpeg-python
```python
# src/stubs/ffmpeg/__init__.pyi
# Minimal stub covering project usage
from... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | 8940ad1620c1bdc2ac25d7d7369357d6dad5890c5c9fcb84f1effadf9ded8a08 | 5 | 896 |
py | 70% | 39-371 | MEDIUM |
| scrapers/huggingface.py | 71% | 38-98 | MEDIUM |
| europe_pmc.py | 74% | 43-81 | MEDIUM |
| scrapers/wayback.py | 74% | 48-127 | MEDIUM |
| scrapers/wikidata.py | 74% | 52-103 | MEDIUM |
| graph/taxonomy.py | 79% | 25-125 | LOW |
| scrapers/youtube.py | 78% | 44-184 | LOW |
**Modules alr... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | 56e0f6343bdafea54780c418f3d8c2f5b36cde70747395fe30f242acc5a2f9d6 | 6 | 896 |
30 | Manual fix |
### Missing Docstrings (36 total)
| Category | Count | Examples |
|----------|-------|---------|
| Module docstrings (__init__.py) | 5 | `__init__.py`, `embedders/__init__.py`, `graph/__init__.py`, `scrapers/__init__.py`, `storage/__init__.py` |
| Enum/model class docstrings | 5 | Modality, FetchSta... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | 03cc2e4feb2ba4b953154eab9b15e8559b2cc8e33e24bfba0bb3f2a60515c4ea | 7 | 896 |
` [tool.pytest.ini_options] |
| Quick run command | `uv run pytest -m "not live" -x -q` |
| Full suite command | `uv run pytest --cov=jku_kb --cov-branch --cov-report=term-missing -m "not live"` |
### Phase Requirements -> Test Map
| Req ID | Behavior | Test Type | Automated Command | File Exists? |
|--------|--------... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | db74fa8c28d2c8949e71c8237215bab7a5836ca81d9067d467dcbb9a727078f5 | 8 | 896 |
- What we know: ffmpeg-python and feedparser have no type stubs. CONTEXT.md says "write minimal stubs where not available".
- What's unclear: Whether to put stubs in `src/stubs/` (with mypy `mypy_path` config) or directly as `.pyi` files next to the imports.
- Recommendation: Use `src/stubs/` directory with `mypy... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-RESEARCH.md | Markdown | 099deb76366ac5f91ca4318b41acca60d7207ffeb7d6e9a1e948b4ad14e62e2e | 9 | 640 |
---
phase: 7
slug: testing-quality
status: draft
nyquist_compliant: false
wave_0_complete: false
created: 2026-03-20
---
# Phase 7 — Validation Strategy
> Per-phase validation contract for feedback sampling during execution.
---
## Test Infrastructure
| Property | Value |
|----------|-------|
| **Framework** | pyt... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VALIDATION.md | Markdown | 0e9882b968d72f1f4f21aa428bd5ac36e67fe2d4259f092afd5af697a932aaee | 0 | 896 |
pending |
| 07-03-05 | 03 | 3 | QUAL-04 | integration | `uv run pytest -k idempotent -v` | ❌ W0 | ⬜ pending |
*Status: ⬜ pending · ✅ green · ❌ red · ⚠️ flaky*
---
## Wave 0 Requirements
- [ ] `tests/integration/test_storage_roundtrip.py` — stubs for TEST-03 (Qdrant + Neo4j roundtrip)
- [ ] `tests/integration/test_g... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VALIDATION.md | Markdown | ea76e8198d3c84306eb6e3c8fb6980998da1a4a8d4a3a36418502643e8a65520 | 1 | 389 |
---
phase: 07-testing-quality
verified: 2026-03-21T12:30:00Z
status: passed
score: 9/10 must-haves verified
gaps:
- truth: "ruff check src/ tests/ exits with 0 errors"
status: resolved
reason: "7 lint violations introduced in test files written by Plans 03 and 04. src/ is clean; tests/ has violations in test_... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VERIFICATION.md | Markdown | 85b917ca4bdf95055ae697a87d680d60471dbf899ee5089b616c401da5a10d63 | 0 | 896 |
no duplicates (QUAL-04) | VERIFIED | `test_upsert_idempotent` in both TestQdrantRoundtrip and TestNeo4jRoundtrip; `test_pipeline_idempotent` in E2E |
**Score:** 9/10 truths verified
### Required Artifacts
| Artifact | Expected | Status | Details |
|----------|----------|--------|---------|
| `src/stubs/ffmpeg/__init... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VERIFICATION.md | Markdown | 1ed238c2e73858d8d31a1e3a376982ac8773e499c26df713d964e0c862f77c66 | 1 | 896 |
` | WIRED | `await store.upsert_batch(...)` on lines 129, 174, 207 |
| `tests/integration/test_storage_roundtrip.py` | `src/jku_kb/storage/neo4j.py` | `Neo4jStore.create_schema` | WIRED | `test_create_schema` at line 273 |
| `tests/e2e/test_pipeline_smoke.py` | `src/jku_kb/orchestrator.py` | Orchestrator with mocked sc... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VERIFICATION.md | Markdown | a2e8c1fcb6edb600e81a4231f7521f39ec108ec90b20ce519bd7fb8e12ff2e1f | 2 | 896 |
py` | 204 | E501 line too long (121 chars) | Warning | Minor style |
| `tests/unit/test_scrapers/test_web_crawl.py` | 311 | E741 ambiguous variable `l` | Warning | Readability concern |
| `tests/unit/test_storage/test_local_fs.py` | 3 | I001 unsorted import block | Warning | Does not block test execution |
All 7 viola... | jku-encyclopedia | .planning/milestones/v1.0-phases/07-testing-quality/07-VERIFICATION.md | Markdown | 22696b84788fbb14189627fa6a9e370e718691c89786e0edf457367d8c075efc | 3 | 426 |
---
phase: 08-foundation-registry-orchestrator-test-baseline
plan: 01
type: execute
wave: 1
depends_on: []
files_modified:
- src/jku_kb/scrapers/__init__.py
- src/jku_kb/config.py
- src/jku_kb/scrapers/arxiv.py
- src/jku_kb/scrapers/europe_pmc.py
- src/jku_kb/scrapers/github.py
- src/jku_kb/scrapers/hugging... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-PLAN.md | Markdown | f54708b5a6b53a5821132dfab5955e09b55267ceced49864998463d0def1c309 | 0 | 896 |
(BaseScraper):
def __init__(self, settings: Settings, source_id: str = "jku_web",
start_urls: list[str] | None = None, max_pages: int = 2000) -> None:
```
From src/jku_kb/orchestrator.py (current factory — to be replaced):
```python
# Lines 92-163: hardcoded _get_scraper() factory with 19 source m... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-PLAN.md | Markdown | 2d310c97cf324178bb9da3a7082418e1d15e67bcc6d9a5d4ec815799ee74bb42 | 1 | 896 |
": SourceConfig(
scraper_class="web_crawl",
start_urls=["https://www.bioinf.jku.at/teaching/"],
max_pages=500,
),
"fmv_jku": SourceConfig(
scraper_class="web_crawl",
start_urls=["https://fmv.jku.at/teaching/"],
max_pages=500,
),
"cp_jku": SourceConfig(
... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-PLAN.md | Markdown | 9fa0b615276e23ac52a19ca1e64674031ad6e9b055d4de1a927942ce759e58ad | 2 | 896 |
src/jku_kb/scrapers/openalex.py
- src/jku_kb/scrapers/opencast.py
- src/jku_kb/scrapers/pdf_fetch.py
- src/jku_kb/scrapers/podcast.py
- src/jku_kb/scrapers/semantic_scholar.py
- src/jku_kb/scrapers/web_crawl.py
- src/jku_kb/scrapers/wikidata.py
- src/jku_kb/scrapers/youtube.py
- src/jku_... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-PLAN.md | Markdown | f6bde82c621dbe860502c43114e65e1208ba42c74ffb451bbdcbb72bda6724e6 | 3 | 896 |
source_id, settings)
```
Make sure `settings` is in scope at that point (it is — it's created earlier in the same function). If the import is better placed at the top of the file, add it there instead.
</action>
<verify>
<automated>cd C:/Development/Private/jku-encyclopedia && uv run python -c "
from jku_kb.sc... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-PLAN.md | Markdown | e54a31e66c066cd2271f9ddf2848db53a2302ef71598e5ccbb3764fef4b8e0b1 | 4 | 832 |
---
phase: 08-foundation-registry-orchestrator-test-baseline
plan: "01"
subsystem: scrapers
tags: [registry, decorator-pattern, refactoring, wayback-removal]
dependency_graph:
requires: []
provides: [scraper-registry, source-config-model]
affects: [orchestrator, cli]
tech_stack:
added: []
patterns: [decorator... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-SUMMARY.md | Markdown | 3990320cfeaf73dd45733a355bb9eb531aa095611d7b21c8fed4cf3cbbd5edb5 | 0 | 896 |
executed exactly as written.
## Commits
| Hash | Description |
|------|-------------|
| f2b02da | feat(08-01): create scraper registry and SourceConfig model |
| 248b253 | feat(08-01): decorate all scrapers, remove Wayback, update CLI to use registry |
## Self-Check: PASSED
- `src/jku_kb/scrapers/__init__.py` exist... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-01-SUMMARY.md | Markdown | 75c207643f6fc7c09d122f378e41d348f4c9e6c2ca82555dfeb5627f5551d277 | 1 | 193 |
---
phase: 08-foundation-registry-orchestrator-test-baseline
plan: 02
type: execute
wave: 2
depends_on: ["08-01"]
files_modified:
- src/jku_kb/orchestrator/__init__.py
- src/jku_kb/orchestrator/helpers.py
- src/jku_kb/orchestrator/discover.py
- src/jku_kb/orchestrator/fetch.py
- src/jku_kb/orchestrator/chunk.... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-02-PLAN.md | Markdown | 9f99db92299565863bdc29eb8bb65236e6d3265c42e8f4fa1a8b716b5d46de55 | 0 | 896 |
/Users/julia/.claude/get-shit-done/templates/summary.md
</execution_context>
<context>
@.planning/ROADMAP.md
@.planning/REQUIREMENTS.md
@.planning/phases/08-foundation-registry-orchestrator-test-baseline/08-CONTEXT.md
@.planning/phases/08-foundation-registry-orchestrator-test-baseline/08-RESEARCH.md
@.planning/phases/... | jku-encyclopedia | .planning/milestones/v1.1-phases/08-foundation-registry-orchestrator-test-baseline/08-02-PLAN.md | Markdown | 92a1054f129523b9eb855a05c94af1c027df86328d2b21ce06e7695224906018 | 1 | 896 |
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