| """Inspect extra_tooth_labels/ and report which case each file maps to + what |
| preprocess.assemble_label will do. |
| |
| python -m toothcanal.inspect_labels --config configs/default.yaml |
| |
| Use this BEFORE running preprocess on cases 21-30: it tells you which files in |
| extra_tooth_labels/ are recognized, which case each is mapped to, and whether |
| the content already contains tooth bodies (overrides HF label) or only teeth / |
| only canal (needs merging). |
| """ |
| import os, re, glob, argparse |
| import numpy as np |
| from .utils import load_config, load_nii |
|
|
|
|
| def case_candidates(name): |
| """Return the set of plausible case numbers (1..40) suggested by filename.""" |
| import re |
| runs = re.findall(r"\d+", name) |
| plausible = set() |
| for r in runs: |
| n = int(r) |
| if 1 <= n <= 40: |
| plausible.add(n) |
| for w in (2, 3): |
| for i in range(len(r) - w + 1): |
| n = int(r[i:i + w]) |
| if 1 <= n <= 40: |
| plausible.add(n) |
| return sorted(plausible) |
|
|
|
|
| def main(): |
| ap = argparse.ArgumentParser() |
| ap.add_argument("--config", default="configs/default.yaml") |
| args = ap.parse_args() |
| cfg = load_config(args.config) |
|
|
| extra = cfg["paths"].get("extra_tooth_dir") |
| if not extra or not os.path.isdir(extra): |
| raise SystemExit(f"extra_tooth_dir not found: {extra}") |
| ls = cfg["label_scheme"] |
| cands = sorted(glob.glob(os.path.join(extra, "**", "*.nii.gz"), recursive=True)) |
| if not cands: |
| raise SystemExit(f"no .nii.gz files in {extra}") |
|
|
| print(f"\nInspecting {len(cands)} files in {extra}\n") |
| print(f"{'file':50s} {'cases':>14s} {'shape':>15s} {'labels':>40s} verdict") |
| print("-" * 145) |
| by_case = {} |
| for p in cands: |
| base = os.path.basename(p) |
| guesses = case_candidates(base) |
| try: |
| vol, _ = load_nii(p) |
| vol = np.rint(vol).astype(np.int16) |
| uniq = sorted(int(v) for v in np.unique(vol) if v != 0) |
| except Exception as e: |
| print(f"{base:50s} READ FAIL: {e}") |
| continue |
| has_canal = any(ls["canal_lo"] <= v <= ls["canal_hi"] for v in uniq) |
| has_body = any(ls["body_lo"] <= v <= ls["body_hi"] for v in uniq) |
| if has_canal and has_body: |
| verdict = "COMPLETE (will override HF label)" |
| elif has_canal and not has_body: |
| verdict = "canal-only (won't be used; rename / replace)" |
| elif has_body and not has_canal: |
| verdict = "body-only (will be merged with HF canal)" |
| else: |
| verdict = "binary or unknown -> will be merged" |
| head = (str(uniq)[:38] + "..") if len(str(uniq)) > 40 else str(uniq) |
| cstr = ",".join(str(c) for c in guesses) if guesses else "-" |
| print(f"{base[:50]:50s} {cstr:>14s} {str(vol.shape):>15s} {head:>40s} {verdict}") |
| for n in guesses: |
| by_case.setdefault(n, []).append((base, verdict)) |
|
|
| print("\nPer-case summary (production resolution via find_extra_tooth):") |
| from .assemble import find_extra_tooth |
| extra_dir = cfg["paths"]["extra_tooth_dir"] |
| chosen = {} |
| for n in range(1, 41): |
| p = find_extra_tooth(n, extra_dir) |
| if p: |
| chosen[n] = os.path.basename(p) |
| for n in sorted(chosen): |
| print(f" case {n:>2}: -> {chosen[n]}") |
| missing = [n for n in range(21, 31) if n not in chosen] |
| if missing: |
| print(f"\n WARNING: no extra label resolved for cases {missing} in 21-30 range.") |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|
