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Closes #722
Closes #719
Closes #574
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This expands the set of variables recorded by including additional ones, providing a wider range... | null | {
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https://... | null | {
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Closes #734
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Add source, target and weighted connections for STDP simulations from graphml files. Create NeuralEdgeProperties struct for ... | {
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Closes #648
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Closes #786 #806
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#### Description
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#### Checklist (Mandatory for new features)
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Closes #783
Closes #773
Closes #319
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#### Description
This PR replaces and continues work from #794
Continues from work on #794:
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Closes #791
<!-- Please provide a brief overview of the changes implemented -->
#### Description
Move neuronTypeToString to AllVertices and rename to vertexTypeToString (utility function).
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<!-- Please provide a brief overview of the changes implemented -->
#### Description
Removed the probed neuron/vertex list from all config files, as this code no longer exists.
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#### Checklist (Mandatory for new features)
- [ ] Added Documentation
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Closes #648
Closes #734
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#### Description
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"@stiber based on the edge state not being updated until after we know that we need to transfer the call to the vertex, I think it's reasonable for all of the current advanceEdges implementation to be moved into integrateVertexInput. Lets discuss this PR at our 1:1 later this week."
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Closes #806
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On debugging we found the follwing two root causes:
1. The `summationPoints_` v... | {
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"@stiber this should be a quick review, but it is ready when you get a chance. I'll then set up a PR to merge this into Shared Development."
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Closes #786
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#### Description
It looks like the 911 file wasn't moved when the Cpu and Gpu testing subfolders were created. Moved small 911 test into Cpu s... | {
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CloudBees' repo for the PlantUML github-action is no longer available.
Investigation is needed. | null | {
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PlantUML link is more than just a broken link, and may require an alternative repo. Should be opened as its' own issue.
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Closes #
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"Well, on the bright side, this problem will go away in the not-too-distant future, since this recorder class is a hack and the 911 simulations will switch over to using the standard recorder classes. See #719 ",
"@stiber ahhh okay. That makes sense. Is that why the 911Edges.h doesn't have the Cereal serializatio... | 2025-02-26T04:58:49 | 2025-03-06T22:52:04 | null | CONTRIBUTOR | null | {
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https://github.com/UWB-Biocomputing/Graphitti/blob/212fb1df8950cf5cd040ef2a0bf0f80b32e8af64/Simulator/Recorders/NG911/Xml911Recorder.cpp#L35-L40
Not sure why this is or if/why its needed. | null | {
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#### Description
Adding VertexType to Recorders
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#### Checklist (Mandatory for new features)
- [x] Added Documentation
- [x] Added Unit Tests
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#### Description
The GraphManager class needs to be modified to support different property structs for specific application domains. This enhancement will involve templating the class and adding inheritance to the VertexProperty.
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"@stiber this PR is to merge my PoseyDevelopment branch into SharedDevelopment. This will merge PRs 777 and 789 into SharedDevelopment. Per the above commits, it is now up-to-date with SharedDevelopment. I took a quick look through the file changes and it looks like it only contains the changes from the two PRs so ... | 2025-02-18T05:16:51 | 2025-02-19T19:45:52 | 2025-02-19T19:45:52 | CONTRIBUTOR | null | {
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Closes #745 #785
<!-- Please provide a brief overview of the changes implemented -->
#### Description
Merge includes two PRs. PR 777 which moved the vertex integration logic that lived in the Edges class into the Vertices... | {
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#### Description
Code to copy the weights back from the GPU after each epoch.
<!-- Please check the boxes as applicable -->
#### Checklist (Mandatory for new features)
- [x] Added Documentation
- [ ] Added Unit Tests
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As a part of the onboarding task add Padmanabh Patil to the Contributors list of Graphitti.
#### Files
Contributors.txt | null | {
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Closes #783
Closes #773
<!-- Please provide a brief overview of the changes implemented -->
#### Description
CMAKE build types cleaned up in cmakelists
```
# Build Type Configuration
#
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Graphitti Issues and Pull Requests Dataset Summary
This dataset contains issues, pull requests, and their associated comments from the UW Bothell Graphitti Project, a high-speed graph simulator. It includes metadata such as:
Issue/PR metadata: title, body, state (open/closed/merged), labels, milestone, timestamps, author, etc.
Comments: discussion threads associated with each issue or PR.
Pull request-specific details: lines changed, commits, merged status, etc.
Use Cases:
Researchers can analyze open-source development practices, bug triaging, and collaboration dynamics.
Machine learning tasks like text classification (by label, severity, or topic), summarization (of long discussion threads), or sentiment analysis are all possible with these data.
Supported Tasks and Leaderboards
Potential tasks include:
Issue Classification / Triage
Classifying issues by type (bug, enhancement, question, etc.) or priority.
Topic Modeling
Discovering common themes or recurring issues in the project.
Summarization
Summarizing multi-turn issue or pull request discussions.
Sentiment Analysis
Analyzing the tone of contributors’ messages (helpful, frustrated, neutral, etc.).
Pull Request Analysis
Examining typical code contribution patterns or changes over time.
There are no official leaderboards associated with this dataset. Languages
Most text in this dataset is English, as GitHub issues and pull requests are typically written in English. Additionally, code snippets or references may appear in C++ (the Graphitti project’s primary language). Dataset Structure
Each row in this dataset corresponds to either an Issue or a Pull Request from the Graphitti repository. Key fields include:
id: The numerical GitHub ID.
type: Indicates issue or pull_request.
title: Title of the issue or PR.
body: Main description text.
state: For example, open, closed, merged.
user: GitHub user metadata (e.g., username, user ID).
comments: A sequence of comments (string text).
created_at, updated_at, closed_at: Timestamps in ISO format.
Additional fields like labels, milestone, reactions, etc.
Splits: According to the YAML front matter, the dataset is currently organized into a single train split containing 923 examples (issues/PRs). Users can choose to create validation/test splits as needed. Dataset Creation Curation Rationale
The Graphitti project is a significant academic and open-source effort at UW Bothell, focusing on high-speed graph simulation. Collecting issues and pull requests offers insight into:
Common bugs, feature requests, or usage patterns.
Developer collaboration and communication.
Code quality and testing practices in real-world open-source projects.
Source Data
Repository: UWB-Biocomputing/Graphitti on GitHub
Collection Method: The dataset was extracted via GitHub’s REST API (e.g., issues and pulls endpoints), capturing all available public issues and pull requests, along with their comment threads.
Annotations
No additional manual annotations: The labels, states, and statuses are those used in the original GitHub repository.
Who are the annotators?: All metadata and labels are generated by GitHub or by Graphitti’s contributors.
Considerations for Using the Data Social Impact
Can facilitate research on open-source community practices, academic software projects, and HPC (high-performance computing) collaboration patterns.
Offers an educational perspective on real-world software engineering processes.
Potential Risks and Ethical Considerations
Personal Data:
GitHub usernames (and potentially user profiles, if included) could be considered personal data. While publicly available, re-publishing them in new contexts might raise privacy questions.
Users may inadvertently share personal information within issue discussions.
Code Snippets:
Issues or PRs may contain code under specific licenses (Graphitti is presumably under an open-source license). Ensure compliance with the original project’s license when reusing the code.
Toxic or Sensitive Language:
While not likely in an academic project, some discussions could contain rude or offensive language. Screening is recommended if you plan to use it for moderation or sentiment tasks.
GitHub Terms of Service:
This dataset is derived from content hosted on GitHub. Users should adhere to GitHub’s TOS regarding data usage and redistribution.
Discussion of Biases
The content reflects a specific project’s topics (high-speed graph simulation), so it may not generalize to other domains.
Language usage, patterns of communication, and culture are shaped by a small academic open-source community.
Additional Information Dataset Curators
UW Bothell CS Team (and community contributors). If you contributed to Graphitti’s issues or pull requests, you may be represented in the dataset. Licensing Information
Data License: GitHub repository data is generally subject to GitHub Terms of Service.
Code License: Graphitti’s source code is licensed under [ADD LICENSE HERE] (e.g., MIT, BSD, GPL?).
If you redistribute code snippets, confirm it aligns with the project’s open-source license.
Citation Information
If you use this dataset, please cite:
```bibtex @misc{graphitti_issues_prs_2025, title = {Graphitti Issues and Pull Requests}, author = {UW Bothell CS Team}, howpublished = {Hugging Face, https://huggingface.co/datasets/YOUR_DATASET_SLUG}, year = {2025} } ```
Contributions
Special thanks to:
Justin Madison for dataset creation and curation.
Graphitti Maintainers and UW Bothell for hosting the original codebase and issue discussions.
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