Datasets:
KaiLv
/
UDR_Java

Dataset card Data Studio Files
xet
 Community
idx
int64
0
165k
question
stringlengths
73
4.15k
target
stringlengths
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918
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int64
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len_target
int64
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final protected static void doMain ( StringDistance d , String [ ] argv ) { if ( argv . length != 2 ) { System . out . println ( "usage: string1 string2" ) ; } else { System . out . println ( d . explainScore ( argv [ 0 ] , argv [ 1 ] ) ) ; } }
Default main routine for testing
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public int getAlignedChar ( int iMinusOne , boolean preferHigherIndices ) { // internally to this package, strings are indexed 1...N, so // we need to convert from the usual 0...N-1 Java convention int i = iMinusOne + 1 ; int bestJ = - 1 ; double bestScore = - Double . MAX_VALUE ; for ( int j = mat . getFirstStoredEntryInRow ( i ) ; j <= mat . getLastStoredEntryInRow ( i ) ; j ++ ) { if ( mat . outOfRange ( i , j ) ) log . error ( "out of range: " + i + "," + j ) ; double score = mat . get ( i , j ) ; if ( ( score > bestScore ) || ( score == bestScore && preferHigherIndices ) ) { bestScore = score ; bestJ = j ; } } // convert back to the usual 0...N-1 Java convention return bestJ - 1 ; }
Find a character in the first string s that can be aligned with the i - th character in the second string t .
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public String getCopyright ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_copyright == null ) jcasType . jcas . throwFeatMissing ( "copyright" , "de.julielab.jules.types.Header" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_copyright ) ; }
getter for copyright - gets Copyright information C
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public void setCopyright ( String v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_copyright == null ) jcasType . jcas . throwFeatMissing ( "copyright" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_copyright , v ) ; }
setter for copyright - sets Copyright information C
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public boolean getTruncated ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_truncated == null ) jcasType . jcas . throwFeatMissing ( "truncated" , "de.julielab.jules.types.Header" ) ; return jcasType . ll_cas . ll_getBooleanValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_truncated ) ; }
getter for truncated - gets Indicates whether the document is truncated C
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public void setTruncated ( boolean v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_truncated == null ) jcasType . jcas . throwFeatMissing ( "truncated" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setBooleanValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_truncated , v ) ; }
setter for truncated - sets Indicates whether the document is truncated C
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public FSArray getAuthors ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_authors == null ) jcasType . jcas . throwFeatMissing ( "authors" , "de.julielab.jules.types.Header" ) ; return ( FSArray ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors ) ) ) ; }
getter for authors - gets The authors of the document O
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public void setAuthors ( FSArray v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_authors == null ) jcasType . jcas . throwFeatMissing ( "authors" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for authors - sets The authors of the document O
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public AuthorInfo getAuthors ( int i ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_authors == null ) jcasType . jcas . throwFeatMissing ( "authors" , "de.julielab.jules.types.Header" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors ) , i ) ; return ( AuthorInfo ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors ) , i ) ) ) ; }
indexed getter for authors - gets an indexed value - The authors of the document O
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public void setAuthors ( int i , AuthorInfo v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_authors == null ) jcasType . jcas . throwFeatMissing ( "authors" , "de.julielab.jules.types.Header" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors ) , i ) ; jcasType . ll_cas . ll_setRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_authors ) , i , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
indexed setter for authors - sets an indexed value - The authors of the document O
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public FSArray getPubTypeList ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_pubTypeList == null ) jcasType . jcas . throwFeatMissing ( "pubTypeList" , "de.julielab.jules.types.Header" ) ; return ( FSArray ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList ) ) ) ; }
getter for pubTypeList - gets The list of the publication types O
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public void setPubTypeList ( FSArray v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_pubTypeList == null ) jcasType . jcas . throwFeatMissing ( "pubTypeList" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for pubTypeList - sets The list of the publication types O
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public PubType getPubTypeList ( int i ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_pubTypeList == null ) jcasType . jcas . throwFeatMissing ( "pubTypeList" , "de.julielab.jules.types.Header" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList ) , i ) ; return ( PubType ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList ) , i ) ) ) ; }
indexed getter for pubTypeList - gets an indexed value - The list of the publication types O
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public void setPubTypeList ( int i , PubType v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_pubTypeList == null ) jcasType . jcas . throwFeatMissing ( "pubTypeList" , "de.julielab.jules.types.Header" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList ) , i ) ; jcasType . ll_cas . ll_setRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_pubTypeList ) , i , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
indexed setter for pubTypeList - sets an indexed value - The list of the publication types O
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public String getLanguage ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_language == null ) jcasType . jcas . throwFeatMissing ( "language" , "de.julielab.jules.types.Header" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_language ) ; }
getter for language - gets The language of the document O
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public void setLanguage ( String v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_language == null ) jcasType . jcas . throwFeatMissing ( "language" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_language , v ) ; }
setter for language - sets The language of the document O
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public String getDoi ( ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_doi == null ) jcasType . jcas . throwFeatMissing ( "doi" , "de.julielab.jules.types.Header" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_doi ) ; }
getter for doi - gets document object identifier
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public void setDoi ( String v ) { if ( Header_Type . featOkTst && ( ( Header_Type ) jcasType ) . casFeat_doi == null ) jcasType . jcas . throwFeatMissing ( "doi" , "de.julielab.jules.types.Header" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Header_Type ) jcasType ) . casFeatCode_doi , v ) ; }
setter for doi - sets document object identifier
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public int getDocumentFrequency ( Token token ) { Integer df = ( Integer ) documentFrequency . get ( token ) ; if ( df == null ) return 0 ; else return df . intValue ( ) ; }
Get the document frequency of the token .
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public void setGender ( String v ) { if ( PronounFeats_Type . featOkTst && ( ( PronounFeats_Type ) jcasType ) . casFeat_gender == null ) jcasType . jcas . throwFeatMissing ( "gender" , "de.julielab.jules.types.PronounFeats" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( PronounFeats_Type ) jcasType ) . casFeatCode_gender , v ) ; }
setter for gender - sets Gender
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public String getCase ( ) { if ( PronounFeats_Type . featOkTst && ( ( PronounFeats_Type ) jcasType ) . casFeat_case == null ) jcasType . jcas . throwFeatMissing ( "case" , "de.julielab.jules.types.PronounFeats" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( PronounFeats_Type ) jcasType ) . casFeatCode_case ) ; }
getter for case - gets Case
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public void setCase ( String v ) { if ( PronounFeats_Type . featOkTst && ( ( PronounFeats_Type ) jcasType ) . casFeat_case == null ) jcasType . jcas . throwFeatMissing ( "case" , "de.julielab.jules.types.PronounFeats" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( PronounFeats_Type ) jcasType ) . casFeatCode_case , v ) ; }
setter for case - sets Case
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public String getNumber ( ) { if ( PronounFeats_Type . featOkTst && ( ( PronounFeats_Type ) jcasType ) . casFeat_number == null ) jcasType . jcas . throwFeatMissing ( "number" , "de.julielab.jules.types.PronounFeats" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( PronounFeats_Type ) jcasType ) . casFeatCode_number ) ; }
getter for number - gets Number
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public void setNumber ( String v ) { if ( PronounFeats_Type . featOkTst && ( ( PronounFeats_Type ) jcasType ) . casFeat_number == null ) jcasType . jcas . throwFeatMissing ( "number" , "de.julielab.jules.types.PronounFeats" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( PronounFeats_Type ) jcasType ) . casFeatCode_number , v ) ; }
setter for number - sets Number
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public java . util . List < Object > getHeaders ( ) { if ( headers == null ) { headers = new ArrayList < Object > ( ) ; } return this . headers ; }
Gets the value of the headers property .
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public String getComponentId ( ) { if ( Annotation_Type . featOkTst && ( ( Annotation_Type ) jcasType ) . casFeat_componentId == null ) jcasType . jcas . throwFeatMissing ( "componentId" , "de.julielab.jules.types.Annotation" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Annotation_Type ) jcasType ) . casFeatCode_componentId ) ; }
getter for componentId - gets Indicates which NLP component has been used to derive the annotation C
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public void setComponentId ( String v ) { if ( Annotation_Type . featOkTst && ( ( Annotation_Type ) jcasType ) . casFeat_componentId == null ) jcasType . jcas . throwFeatMissing ( "componentId" , "de.julielab.jules.types.Annotation" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Annotation_Type ) jcasType ) . casFeatCode_componentId , v ) ; }
setter for componentId - sets Indicates which NLP component has been used to derive the annotation C
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public void add ( String text , MentionType type ) { MentionType previousType = entities . add ( process ( text ) , type ) ; if ( previousType != null && ! previousType . equals ( type ) ) throw new IllegalArgumentException ( "Text is already associated with a different tag: " + text ) ; }
Adds a single entry to the dictionary . The text is processed by the tokenizer and the resulting tokens are stored .
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public void toFrequencyFile ( String filePath ) throws IOException { BufferedWriter writer = new BufferedWriter ( new OutputStreamWriter ( new FileOutputStream ( filePath ) , "UTF-8" ) ) ; for ( TrieNodeCnt child : root . children . values ( ) ) { child . writeFrequencies ( writer , new char [ 0 ] ) ; // recursive } writer . close ( ) ; }
one entry per line . word first then tab then frequency
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public FSArray getNames ( ) { if ( EntityAttribute_Type . featOkTst && ( ( EntityAttribute_Type ) jcasType ) . casFeat_names == null ) jcasType . jcas . throwFeatMissing ( "names" , "de.julielab.jules.types.ace.EntityAttribute" ) ; return ( FSArray ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names ) ) ) ; }
getter for names - gets
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public void setNames ( FSArray v ) { if ( EntityAttribute_Type . featOkTst && ( ( EntityAttribute_Type ) jcasType ) . casFeat_names == null ) jcasType . jcas . throwFeatMissing ( "names" , "de.julielab.jules.types.ace.EntityAttribute" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for names - sets
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public Name getNames ( int i ) { if ( EntityAttribute_Type . featOkTst && ( ( EntityAttribute_Type ) jcasType ) . casFeat_names == null ) jcasType . jcas . throwFeatMissing ( "names" , "de.julielab.jules.types.ace.EntityAttribute" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names ) , i ) ; return ( Name ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names ) , i ) ) ) ; }
indexed getter for names - gets an indexed value -
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public void setNames ( int i , Name v ) { if ( EntityAttribute_Type . featOkTst && ( ( EntityAttribute_Type ) jcasType ) . casFeat_names == null ) jcasType . jcas . throwFeatMissing ( "names" , "de.julielab.jules.types.ace.EntityAttribute" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names ) , i ) ; jcasType . ll_cas . ll_setRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( EntityAttribute_Type ) jcasType ) . casFeatCode_names ) , i , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
indexed setter for names - sets an indexed value -
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private boolean judgeHTMLCode ( ArrayList < ArrayList < TextPiece > > wordsByPage ) { ArrayList < TextPiece > wordsOfPageOne = wordsByPage . get ( 0 ) ; boolean isHTMLCode = true ; int i = 0 ; /* * do not have to check all words, Checking 10 words is enough */ while ( i < Math . min ( 20 , wordsOfPageOne . size ( ) ) ) { TextPiece currentWord = wordsOfPageOne . get ( i ) ; String thisText = currentWord . getText ( ) ; if ( ( thisText . length ( ) % 2 != 0 ) && ( thisText . matches ( "([A-Z]([A-Z]|[0-9]))*" ) == false ) ) { isHTMLCode = false ; break ; } i ++ ; } // if (isHTMLCode) // System.out.println("This document is coded in HTML code!"); return isHTMLCode ; }
Detects documents encoded in HTML code
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private void extractFiguresFromAPage ( ArrayList < TextPiece > linesOfAPage , ArrayList < TextPiece > wordsOfAPage , int i , File pdfFile , ArrayList < ArrayList < TextPiece > > linesByPage ) { if ( linesOfAPage . size ( ) > 30 ) { // if this page is very short, it // usually does not contain tables /* * Checks for table keyword */ boolean figureKwdExist = false ; int prevTableEndIndex = 0 ; int k = - 1 ; for ( TextPiece t : linesOfAPage ) { k ++ ; String textWithoutSpace = t . getText ( ) . replace ( " " , "" ) ; TextPiece prevLine = ( k == 0 ) ? null : linesOfAPage . get ( k - 1 ) ; if ( getMatchedFigureKeyword ( textWithoutSpace ) != null ) { figureKwdExist = true ; String figKwd = getMatchedFigureKeyword ( textWithoutSpace ) ; System . out . println ( "In page " + ( i + 1 ) + ": " + textWithoutSpace ) ; } } } else { /* * Impossible to contain tables because of few texts in the page */ } }
Extracts figures from ONE page
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private int extractOneTable ( int lineNumber , ArrayList < TextPiece > linesOfAPage , String keyword , TableCandidate tc , ArrayList < TextPiece > wordsOfAPage , int i , int prevTableEndIndex , ArrayList < ArrayList < TextPiece > > linesByPage ) { TextPiece line = linesOfAPage . get ( lineNumber ) ; if ( line . getX ( ) < 0 && line . getWidth ( ) == 0.0 ) { System . out . println ( "\n This is a reversed table, currently we do not support such tables!" ) ; lineNumber ++ ; tc . setValid ( false ) ; } else { lineNumber = findCaptionBoundary ( lineNumber , linesOfAPage , tc ) ; if ( tc . isValid ( ) ) { tc . setPageId_thisTable ( i ) ; // getReferenceTableTexts(tc, linesByPage); isWideTable ( tc ) ; Vector distinctY = new Vector ( ) ; Vector piecesEachY = new Vector ( ) ; distinctY = getDistinctSortedY ( distinctY , piecesEachY , wordsOfAPage , tc ) ; boolean aboveCaption = judgeCaptionLocation ( linesOfAPage , tc , distinctY , wordsOfAPage ) ; lineNumber = findBodyBoundary ( lineNumber , linesOfAPage , tc , aboveCaption , prevTableEndIndex ) ; getReferenceTableTexts ( tc , linesByPage ) ; // System.out.println(tc.getRefText()); } tc . setHighLevelMeta ( i ) ; if ( tc . isValid ( ) ) { organizeCells ( linesOfAPage , tc ) ; } if ( tc . isValid ( ) ) { findFootnoteBeginRow ( tc ) ; } if ( tc . isValid ( ) ) { determineFootnoteHeading ( tc ) ; getColumnBoundaryWithoutHeading ( tc ) ; } int cc = tc . getColumnNum_thisTable ( ) ; if ( cc > 20 ) { tc . setValid ( false ) ; } else { // if((cc>=2) && (tc.getMaxColumnNumber()<cc*2) ) { //if we // treat each line as the possible table beginning without // considering the table keyword, we need use this if ( cc >= 2 ) { getTableStructure ( cc , tc , wordsOfAPage ) ; // if (tc.isValid()) parameters.tableNum++; } else { tc . setEmptyMetadataStructureLevel ( tc . getRows ( ) . size ( ) , cc , wordsOfAPage , m_docInfo ) ; } } } return lineNumber ; }
Extracts a table if detecting a potential table caption
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private void isWideTable ( TableCandidate tc ) { float docWidth = m_docInfo . getMaxX ( ) - m_docInfo . getMinX ( ) ; if ( ( ( ( tc . getCaptionX ( ) > ( ( docWidth - 30 ) / ( float ) 4.0 ) + m_docInfo . getMinX ( ) ) ) && ( tc . getCaptionX ( ) < docWidth / 2.5 ) ) || ( tc . getCaptonEndX ( ) - tc . getCaptionX ( ) > docWidth / ( float ) 1.85 ) ) { tc . setWideTable ( true ) ; // System.out.println(); // System.out.println("This is a wide table? " + tc.isWideTable()); } else { // System.out.println(); // System.out.println("This is a single-doc-column table!"); } }
Judges whether a table is a wide table or not by considering the width of the table
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private void organizeCells ( ArrayList < TextPiece > linesOfAPage , TableCandidate tc ) { float captionY = linesOfAPage . get ( tc . getCaptionStartLine ( ) ) . getY ( ) ; float captionEndY = linesOfAPage . get ( tc . getCaptionEndLine ( ) ) . getEndY ( ) ; ArrayList < TextPiece > rawCells = new ArrayList < TextPiece > ( ) ; /* * Copy & sort */ for ( int i = tc . getBodyStartLine ( ) ; i <= tc . getBodyEndLine ( ) ; i ++ ) { rawCells . add ( linesOfAPage . get ( i ) ) ; } Collections . sort ( rawCells ) ; assert rawCells . size ( ) >= 4 ; // due to previous check TableRow currentRow = null ; // creates first row for ( TextPiece cell : rawCells ) { /* * Skips lines beyond caption //TODO: remove the far Y */ if ( tc . isTopCaption ( ) && ( cell . getY ( ) < captionY ) ) continue ; if ( ! tc . isTopCaption ( ) && ( cell . getEndY ( ) > captionEndY ) ) continue ; /* * Lines too close to each other are treated as a single line */ if ( currentRow != null && cell . getY ( ) - currentRow . getY ( ) < m_docInfo . getAverageLineGap ( ) / 2.0 ) currentRow . addCell ( cell ) ; else { /* * Creates a new row */ currentRow = new TableRow ( ) ; currentRow . setY ( cell . getY ( ) ) ; if ( cell . isSuperScriptBeginning ( ) ) currentRow . setSuperScriptRow ( true ) ; currentRow . addCell ( cell ) ; tc . addRow ( currentRow ) ; } } if ( tc . getRows ( ) . size ( ) < 2 ) tc . setValid ( false ) ; }
Organizes cells into rows based on the coordinate information
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public void getRowHeadingBasedOnCells ( TableCandidate tc ) { String rowHeadingThisTable = "" ; int footnoteLineIndex = tc . getFootnoteBeginRow ( ) ; String [ ] [ ] cells = tc . getCells ( ) ; // if (cells[0][0].length()==0 ) { for ( int j = 0 ; j < footnoteLineIndex ; j ++ ) { if ( cells [ j ] [ 0 ] . length ( ) > 0 ) rowHeadingThisTable = rowHeadingThisTable + cells [ j ] [ 0 ] + "; " ; } // } rowHeadingThisTable = tc . replaceAllSpecialChracters ( rowHeadingThisTable ) ; tc . setHeadingRows ( rowHeadingThisTable ) ; }
Get the table row headings based on the cell information
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public String getDeptype ( ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_deptype == null ) jcasType . jcas . throwFeatMissing ( "deptype" , "com.digitalpebble.rasp.Dependency" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_deptype ) ; }
getter for deptype - gets
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public void setDeptype ( String v ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_deptype == null ) jcasType . jcas . throwFeatMissing ( "deptype" , "com.digitalpebble.rasp.Dependency" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_deptype , v ) ; }
setter for deptype - sets
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public String getSubtype ( ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_subtype == null ) jcasType . jcas . throwFeatMissing ( "subtype" , "com.digitalpebble.rasp.Dependency" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_subtype ) ; }
getter for subtype - gets
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public void setSubtype ( String v ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_subtype == null ) jcasType . jcas . throwFeatMissing ( "subtype" , "com.digitalpebble.rasp.Dependency" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_subtype , v ) ; }
setter for subtype - sets
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public WordForm getDep ( ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_dep == null ) jcasType . jcas . throwFeatMissing ( "dep" , "com.digitalpebble.rasp.Dependency" ) ; return ( WordForm ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_dep ) ) ) ; }
getter for dep - gets
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public void setDep ( WordForm v ) { if ( Dependency_Type . featOkTst && ( ( Dependency_Type ) jcasType ) . casFeat_dep == null ) jcasType . jcas . throwFeatMissing ( "dep" , "com.digitalpebble.rasp.Dependency" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( Dependency_Type ) jcasType ) . casFeatCode_dep , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for dep - sets
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public void setValue ( String v ) { if ( Lemma_Type . featOkTst && ( ( Lemma_Type ) jcasType ) . casFeat_value == null ) jcasType . jcas . throwFeatMissing ( "value" , "de.julielab.jules.types.Lemma" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Lemma_Type ) jcasType ) . casFeatCode_value , v ) ; }
setter for value - sets The value of lemma C
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protected boolean trainCorpus ( List < List < Acronym > > corpus , List < Map < String , String > > trueLabels ) { boolean converge = false ; // Unsupervised trueLabels = null ; initModelParamsAndCounters ( ) ; int n = corpus . size ( ) ; int c = 1 ; Double change ; LOG . debug ( "Training abbreviations..." ) ; while ( ! converge ) { for ( int i = 0 ; i < n ; i ++ ) { List < Acronym > docAcronyms = corpus . get ( i ) ; Map < String , String > docTrueLabels = null ; if ( trueLabels != null ) docTrueLabels = trueLabels . get ( i ) ; int m = docAcronyms . size ( ) ; for ( int j = 0 ; j < m ; j ++ ) { Acronym currAcronym = docAcronyms . get ( j ) ; if ( trueLabels != null ) expectationStep ( currAcronym , docTrueLabels . get ( currAcronym . _shortForm ) ) ; else expectationStep ( currAcronym , null ) ; } } change = maximizationStep ( ) ; LOG . debug ( "step {}..." , c ) ; c ++ ; if ( c > MAX_ITERATIONS ) { System . out . println ( "\n\tTraining stopped after " + ( c - 1 ) + " iterations with final change: " + change ) ; converge = true ; } if ( change . compareTo ( CHANGE_THRESHOLD ) < 0 ) { LOG . debug ( "Training converged in " + ( c - 1 ) + " iterations." ) ; converge = true ; } } saveModelParams ( ) ; return true ; }
Gets training examples separated by documents
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public String remove ( String txt ) { for ( Pattern p : patterns . keySet ( ) ) { System . out . println ( "p: " + p ) ; System . out . println ( "b: " + txt ) ; txt = p . matcher ( txt ) . replaceAll ( patterns . get ( p ) ) ; System . out . println ( "a: " + txt ) ; } return txt ; }
Takes a string and returns it without ligatures in it
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public FSArray getValue ( ) { if ( DiscontinuousAnnotation_Type . featOkTst && ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeat_value == null ) jcasType . jcas . throwFeatMissing ( "value" , "de.julielab.jules.types.DiscontinuousAnnotation" ) ; return ( FSArray ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value ) ) ) ; }
getter for value - gets Annotations to be chained .
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public void setValue ( FSArray v ) { if ( DiscontinuousAnnotation_Type . featOkTst && ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeat_value == null ) jcasType . jcas . throwFeatMissing ( "value" , "de.julielab.jules.types.DiscontinuousAnnotation" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for value - sets Annotations to be chained .
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public Annotation getValue ( int i ) { if ( DiscontinuousAnnotation_Type . featOkTst && ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeat_value == null ) jcasType . jcas . throwFeatMissing ( "value" , "de.julielab.jules.types.DiscontinuousAnnotation" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value ) , i ) ; return ( Annotation ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value ) , i ) ) ) ; }
indexed getter for value - gets an indexed value - Annotations to be chained .
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public void setValue ( int i , Annotation v ) { if ( DiscontinuousAnnotation_Type . featOkTst && ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeat_value == null ) jcasType . jcas . throwFeatMissing ( "value" , "de.julielab.jules.types.DiscontinuousAnnotation" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value ) , i ) ; jcasType . ll_cas . ll_setRefArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( DiscontinuousAnnotation_Type ) jcasType ) . casFeatCode_value ) , i , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
indexed setter for value - sets an indexed value - Annotations to be chained .
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public int getDocumentSize ( ) { if ( SourceDocumentInformation_Type . featOkTst && ( ( SourceDocumentInformation_Type ) jcasType ) . casFeat_documentSize == null ) jcasType . jcas . throwFeatMissing ( "documentSize" , "org.apache.uima.examples.SourceDocumentInformation" ) ; return jcasType . ll_cas . ll_getIntValue ( addr , ( ( SourceDocumentInformation_Type ) jcasType ) . casFeatCode_documentSize ) ; }
getter for documentSize - gets Size of original document in bytes before processing by CAS Initializer . Either absolute file size of size within file or other source .
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public void setDocumentSize ( int v ) { if ( SourceDocumentInformation_Type . featOkTst && ( ( SourceDocumentInformation_Type ) jcasType ) . casFeat_documentSize == null ) jcasType . jcas . throwFeatMissing ( "documentSize" , "org.apache.uima.examples.SourceDocumentInformation" ) ; jcasType . ll_cas . ll_setIntValue ( addr , ( ( SourceDocumentInformation_Type ) jcasType ) . casFeatCode_documentSize , v ) ; }
setter for documentSize - sets Size of original document in bytes before processing by CAS Initializer . Either absolute file size of size within file or other source .
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public boolean getLastSegment ( ) { if ( SourceDocumentInformation_Type . featOkTst && ( ( SourceDocumentInformation_Type ) jcasType ) . casFeat_lastSegment == null ) jcasType . jcas . throwFeatMissing ( "lastSegment" , "org.apache.uima.examples.SourceDocumentInformation" ) ; return jcasType . ll_cas . ll_getBooleanValue ( addr , ( ( SourceDocumentInformation_Type ) jcasType ) . casFeatCode_lastSegment ) ; }
getter for lastSegment - gets For a CAS that represents a segment of a larger source document this flag indicates whether this CAS is the final segment of the source document . This is useful for downstream components that want to take some action after having seen all of the segments of a particular source document .
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public void setLastSegment ( boolean v ) { if ( SourceDocumentInformation_Type . featOkTst && ( ( SourceDocumentInformation_Type ) jcasType ) . casFeat_lastSegment == null ) jcasType . jcas . throwFeatMissing ( "lastSegment" , "org.apache.uima.examples.SourceDocumentInformation" ) ; jcasType . ll_cas . ll_setBooleanValue ( addr , ( ( SourceDocumentInformation_Type ) jcasType ) . casFeatCode_lastSegment , v ) ; }
setter for lastSegment - sets For a CAS that represents a segment of a larger source document this flag indicates whether this CAS is the final segment of the source document . This is useful for downstream components that want to take some action after having seen all of the segments of a particular source document .
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public String getLemma ( ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_lemma == null ) jcasType . jcas . throwFeatMissing ( "lemma" , "com.digitalpebble.rasp.WordForm" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_lemma ) ; }
getter for lemma - gets lemma of the Form
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public void setLemma ( String v ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_lemma == null ) jcasType . jcas . throwFeatMissing ( "lemma" , "com.digitalpebble.rasp.WordForm" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_lemma , v ) ; }
setter for lemma - sets lemma of the Form
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public String getPOS ( ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_POS == null ) jcasType . jcas . throwFeatMissing ( "POS" , "com.digitalpebble.rasp.WordForm" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_POS ) ; }
getter for POS - gets POS tag for a given form
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public void setPOS ( String v ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_POS == null ) jcasType . jcas . throwFeatMissing ( "POS" , "com.digitalpebble.rasp.WordForm" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_POS , v ) ; }
setter for POS - sets POS tag for a given form
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public String getSuffix ( ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_suffix == null ) jcasType . jcas . throwFeatMissing ( "suffix" , "com.digitalpebble.rasp.WordForm" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_suffix ) ; }
getter for suffix - gets
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public void setSuffix ( String v ) { if ( WordForm_Type . featOkTst && ( ( WordForm_Type ) jcasType ) . casFeat_suffix == null ) jcasType . jcas . throwFeatMissing ( "suffix" , "com.digitalpebble.rasp.WordForm" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( WordForm_Type ) jcasType ) . casFeatCode_suffix , v ) ; }
setter for suffix - sets
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public static void serializeXMLDocument ( Document doc , Writer output ) throws TransformerException { // serialize XML document using identity transformation Transformer trans = TransformerFactory . newInstance ( ) . newTransformer ( ) ; DOMSource source = new DOMSource ( doc ) ; StreamResult result = new StreamResult ( output ) ; trans . transform ( source , result ) ; }
Writes the given Document to the given Writer using a no - op XSL transformation .
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private FeatureIndex [ ] createFeatureIndex ( int subspaceCount ) // throws // Exception { logger . info ( "create feature index" ) ; FeatureIndex [ ] index = new FeatureIndex [ subspaceCount ] ; for ( int i = 0 ; i < subspaceCount ; i ++ ) index [ i ] = new FeatureIndex ( false , 1 ) ; return index ; }
create feature index
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private static String annotatateContent ( JCas jcas , Object contentObj , int start ) { LOG . trace ( "annotate: " + reflectionToString ( contentObj ) ) ; int end = start ; StringBuilder internalSb = new StringBuilder ( ) ; if ( contentObj instanceof String ) { String c = ( String ) contentObj ; internalSb . append ( c ) ; end += c . length ( ) ; } else if ( contentObj instanceof Cons ) { Cons cons = ( Cons ) contentObj ; for ( Object o : cons . getContent ( ) ) { String parse = annotatateContent ( jcas , o , end ) ; end += parse . length ( ) ; internalSb . append ( parse ) ; } BioEntityMention entity = new BioEntityMention ( jcas , start , end ) ; entity . setSpecificType ( cons . getSem ( ) ) ; entity . setComponentId ( GeniaCorpusCollectionReader . COMPONENT_ID ) ; entity . setTextualRepresentation ( cons . getLex ( ) ) ; entity . addToIndexes ( ) ; } return internalSb . toString ( ) ; }
Recursive since annotations can overlap
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public static Collection < BioEntityMention > getProteins ( Collection < BioEntityMention > mentions ) { ArrayList < BioEntityMention > ret = new ArrayList < BioEntityMention > ( ) ; for ( BioEntityMention mention : mentions ) { if ( mention . getSpecificType ( ) != null && mention . getSpecificType ( ) . startsWith ( "G#protein" ) ) ret . add ( mention ) ; } return ret ; }
Filters mentions that are proteins
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public float getNormalizedValue ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_normalizedValue == null ) jcasType . jcas . throwFeatMissing ( "normalizedValue" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_normalizedValue ) ; }
getter for normalizedValue - gets
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public void setNormalizedValue ( float v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_normalizedValue == null ) jcasType . jcas . throwFeatMissing ( "normalizedValue" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_normalizedValue , v ) ; }
setter for normalizedValue - sets
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public float getRangeStartValue ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_rangeStartValue == null ) jcasType . jcas . throwFeatMissing ( "rangeStartValue" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_rangeStartValue ) ; }
getter for rangeStartValue - gets
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public void setRangeStartValue ( float v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_rangeStartValue == null ) jcasType . jcas . throwFeatMissing ( "rangeStartValue" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_rangeStartValue , v ) ; }
setter for rangeStartValue - sets
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public float getRangeEndValue ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_rangeEndValue == null ) jcasType . jcas . throwFeatMissing ( "rangeEndValue" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_rangeEndValue ) ; }
getter for rangeEndValue - gets
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public void setRangeEndValue ( float v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_rangeEndValue == null ) jcasType . jcas . throwFeatMissing ( "rangeEndValue" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_rangeEndValue , v ) ; }
setter for rangeEndValue - sets
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public float getMeanValue ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_meanValue == null ) jcasType . jcas . throwFeatMissing ( "meanValue" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_meanValue ) ; }
getter for meanValue - gets
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public void setMeanValue ( float v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_meanValue == null ) jcasType . jcas . throwFeatMissing ( "meanValue" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_meanValue , v ) ; }
setter for meanValue - sets
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public float getStandardErrorValue ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_standardErrorValue == null ) jcasType . jcas . throwFeatMissing ( "standardErrorValue" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_standardErrorValue ) ; }
getter for standardErrorValue - gets
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public void setStandardErrorValue ( float v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_standardErrorValue == null ) jcasType . jcas . throwFeatMissing ( "standardErrorValue" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setFloatValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_standardErrorValue , v ) ; }
setter for standardErrorValue - sets
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public String getUnit ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_unit == null ) jcasType . jcas . throwFeatMissing ( "unit" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_unit ) ; }
getter for unit - gets iso
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public void setUnit ( String v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_unit == null ) jcasType . jcas . throwFeatMissing ( "unit" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_unit , v ) ; }
setter for unit - sets iso
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public String getNormalizedUnit ( ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_normalizedUnit == null ) jcasType . jcas . throwFeatMissing ( "normalizedUnit" , "ch.epfl.bbp.uima.types.Measure" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_normalizedUnit ) ; }
getter for normalizedUnit - gets iso
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public void setNormalizedUnit ( String v ) { if ( Measure_Type . featOkTst && ( ( Measure_Type ) jcasType ) . casFeat_normalizedUnit == null ) jcasType . jcas . throwFeatMissing ( "normalizedUnit" , "ch.epfl.bbp.uima.types.Measure" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Measure_Type ) jcasType ) . casFeatCode_normalizedUnit , v ) ; }
setter for normalizedUnit - sets iso
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public double getProbability ( int i ) { if ( TopicDistribution_Type . featOkTst && ( ( TopicDistribution_Type ) jcasType ) . casFeat_probability == null ) jcasType . jcas . throwFeatMissing ( "probability" , "ch.epfl.bbp.uima.types.TopicDistribution" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( TopicDistribution_Type ) jcasType ) . casFeatCode_probability ) , i ) ; return jcasType . ll_cas . ll_getDoubleArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( TopicDistribution_Type ) jcasType ) . casFeatCode_probability ) , i ) ; }
indexed getter for probability - gets an indexed value -
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public void setProbability ( int i , double v ) { if ( TopicDistribution_Type . featOkTst && ( ( TopicDistribution_Type ) jcasType ) . casFeat_probability == null ) jcasType . jcas . throwFeatMissing ( "probability" , "ch.epfl.bbp.uima.types.TopicDistribution" ) ; jcasType . jcas . checkArrayBounds ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( TopicDistribution_Type ) jcasType ) . casFeatCode_probability ) , i ) ; jcasType . ll_cas . ll_setDoubleArrayValue ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( TopicDistribution_Type ) jcasType ) . casFeatCode_probability ) , i , v ) ; }
indexed setter for probability - sets an indexed value -
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public void load ( File file , boolean ids ) throws IOException , FileNotFoundException { LineNumberReader in = new LineNumberReader ( new FileReader ( file ) ) ; String line ; while ( ( line = in . readLine ( ) ) != null ) { if ( ids ) put ( Integer . toString ( in . getLineNumber ( ) ) , line , line ) ; else put ( line , line ) ; } in . close ( ) ; }
Insert all lines in a file as items mapping to themselves . If ids is true then make the line number of an item its id .
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public void loadAliases ( File file ) throws IOException , FileNotFoundException { LineNumberReader in = new LineNumberReader ( new FileReader ( file ) ) ; String line ; while ( ( line = in . readLine ( ) ) != null ) { String [ ] parts = line . split ( "\\t" ) ; for ( int j = 1 ; j < parts . length ; j ++ ) { put ( parts [ j ] , parts [ j ] , parts [ 0 ] ) ; } } in . close ( ) ; }
Load a file of identifiers each of which has multiple aliases . Each line is a list of tab - separated strings the first of which is the identifier the remainder of which are aliases .
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public void put ( String id , StringWrapper toInsert , Object value ) { MyWrapper wrapper = asMyWrapper ( toInsert ) ; Token [ ] tokens = wrapper . getTokens ( ) ; for ( int i = 0 ; i < tokens . length ; i ++ ) { ArrayList stringsWithToken = ( ArrayList ) index . get ( tokens [ i ] ) ; if ( stringsWithToken == null ) index . put ( tokens [ i ] , ( stringsWithToken = new ArrayList ( ) ) ) ; stringsWithToken . add ( wrapper ) ; } map . put ( wrapper , value ) ; if ( id != null ) idMap . put ( wrapper , id ) ; distance = null ; // mark distance as "out of date" totalEntries ++ ; }
Insert a prepared string into the dictionary .
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private void doLookup ( String id , StringWrapper toFind ) { // retrain if necessary if ( distance == null ) { distance = new MyTeacher ( ) . train ( distanceLearner ) ; } // used cached values if it's ok if ( lastLookup == toFind ) return ; closeMatches = new HashSet ( ) ; closestMatch = null ; distanceToClosestMatch = - Double . MAX_VALUE ; // lookup best match to wrapper MyWrapper wrapper = asMyWrapper ( toFind ) ; Token [ ] tokens = wrapper . getTokens ( ) ; for ( int i = 0 ; i < tokens . length ; i ++ ) { ArrayList stringsWithToken = ( ArrayList ) index . get ( tokens [ i ] ) ; if ( stringsWithToken != null && ( ( double ) stringsWithToken . size ( ) / totalEntries ) < maxFraction ) { for ( Iterator j = stringsWithToken . iterator ( ) ; j . hasNext ( ) ; ) { MyWrapper wj = ( MyWrapper ) j . next ( ) ; String wjId = ( String ) idMap . get ( wj ) ; //if (DEBUG) System.out.println("id:"+id+" wjId:"+wjId); if ( ! closeMatches . contains ( wj ) && ( wjId == null || ! wjId . equals ( id ) ) ) { double score = distance . score ( wrapper . getDistanceWrapper ( ) , wj . getDistanceWrapper ( ) ) ; if ( DEBUG ) System . out . println ( "score for " + wj + ": " + score ) ; //if (DEBUG) System.out.println(distance.explainScore(wrapper.getDistanceWrapper(),wj.getDistanceWrapper())); closeMatches . add ( wj ) ; if ( score >= distanceToClosestMatch ) { //if (DEBUG) System.out.println("closest so far"); distanceToClosestMatch = score ; closestMatch = wj ; } } } } } lastLookup = toFind ; }
Lookup a string in the dictionary cache result in closeMatches .
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public Object lookup ( String id , String toFind ) { return lookup ( id , new MyWrapper ( toFind ) ) ; }
Lookup a string in the dictionary .
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public Object lookup ( String id , StringWrapper toFind ) { doLookup ( id , toFind ) ; return closestMatch ; }
Lookup a prepared string in the dictionary .
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private MyWrapper asMyWrapper ( StringWrapper w ) { if ( w instanceof MyWrapper ) return ( MyWrapper ) w ; else return new MyWrapper ( w . unwrap ( ) ) ; }
lazily convert to a MyWrapper
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20,789
static public void main ( String [ ] argv ) throws IOException , FileNotFoundException { SoftDictionary m = new SoftDictionary ( ) ; System . out . println ( "loading..." ) ; m . loadAliases ( new File ( argv [ 0 ] ) ) ; System . out . println ( "loaded..." ) ; for ( int i = 1 ; i < argv . length ; i ++ ) { System . out . println ( "lookup: " + argv [ i ] ) ; String [ ] f = argv [ i ] . split ( ":" ) ; if ( f . length == 1 ) { System . out . println ( argv [ i ] + " => " + m . lookup ( argv [ i ] ) + " at " + m . lookupDistance ( argv [ i ] ) ) ; } else { System . out . println ( f [ 1 ] + " => " + m . lookup ( f [ 0 ] , f [ 1 ] ) + " at " + m . lookupDistance ( f [ 0 ] , f [ 1 ] ) ) ; } } }
Simple main for testing .
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public int getId ( ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_id == null ) jcasType . jcas . throwFeatMissing ( "id" , "de.julielab.jules.types.muc7.Coref" ) ; return jcasType . ll_cas . ll_getIntValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_id ) ; }
getter for id - gets
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public void setId ( int v ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_id == null ) jcasType . jcas . throwFeatMissing ( "id" , "de.julielab.jules.types.muc7.Coref" ) ; jcasType . ll_cas . ll_setIntValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_id , v ) ; }
setter for id - sets
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public String getCorefType ( ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_corefType == null ) jcasType . jcas . throwFeatMissing ( "corefType" , "de.julielab.jules.types.muc7.Coref" ) ; return jcasType . ll_cas . ll_getStringValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_corefType ) ; }
getter for corefType - gets
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public void setCorefType ( String v ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_corefType == null ) jcasType . jcas . throwFeatMissing ( "corefType" , "de.julielab.jules.types.muc7.Coref" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_corefType , v ) ; }
setter for corefType - sets
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public Coref getRef ( ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_ref == null ) jcasType . jcas . throwFeatMissing ( "ref" , "de.julielab.jules.types.muc7.Coref" ) ; return ( Coref ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_ref ) ) ) ; }
getter for ref - gets
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20,795
public void setRef ( Coref v ) { if ( Coref_Type . featOkTst && ( ( Coref_Type ) jcasType ) . casFeat_ref == null ) jcasType . jcas . throwFeatMissing ( "ref" , "de.julielab.jules.types.muc7.Coref" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( Coref_Type ) jcasType ) . casFeatCode_ref , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for ref - sets
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20,796
public Annotation getRef ( ) { if ( ArgumentMention_Type . featOkTst && ( ( ArgumentMention_Type ) jcasType ) . casFeat_ref == null ) jcasType . jcas . throwFeatMissing ( "ref" , "de.julielab.jules.types.ArgumentMention" ) ; return ( Annotation ) ( jcasType . ll_cas . ll_getFSForRef ( jcasType . ll_cas . ll_getRefValue ( addr , ( ( ArgumentMention_Type ) jcasType ) . casFeatCode_ref ) ) ) ; }
getter for ref - gets Reference to the Annotation Object that acts as a argument here
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20,797
public void setRef ( Annotation v ) { if ( ArgumentMention_Type . featOkTst && ( ( ArgumentMention_Type ) jcasType ) . casFeat_ref == null ) jcasType . jcas . throwFeatMissing ( "ref" , "de.julielab.jules.types.ArgumentMention" ) ; jcasType . ll_cas . ll_setRefValue ( addr , ( ( ArgumentMention_Type ) jcasType ) . casFeatCode_ref , jcasType . ll_cas . ll_getFSRef ( v ) ) ; }
setter for ref - sets Reference to the Annotation Object that acts as a argument here
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20,798
public void setRole ( String v ) { if ( ArgumentMention_Type . featOkTst && ( ( ArgumentMention_Type ) jcasType ) . casFeat_role == null ) jcasType . jcas . throwFeatMissing ( "role" , "de.julielab.jules.types.ArgumentMention" ) ; jcasType . ll_cas . ll_setStringValue ( addr , ( ( ArgumentMention_Type ) jcasType ) . casFeatCode_role , v ) ; }
setter for role - sets the role of the argument
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20,799
public String [ ] getTags ( String word ) { if ( caseSensitive ) { return ( String [ ] ) dictionary . get ( word ) ; } else { //System.err.println(java.util.Arrays.asList((String[]) dictionary.get(word.toLowerCase()))); return ( String [ ] ) dictionary . get ( word . toLowerCase ( ) ) ; } }
Returns a list of valid tags for the specified word .
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