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def __retrieve_data ( self ) : if self . __eof is True : return b'' logging . debug ( "Reading another block." ) block = self . read ( self . __block_size ) if block == b'' : self . __log . debug ( "We've encountered the EOF." ) self . __eof = True return block
Read more data from the file .
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def set_mask_from_shapefile ( self , shapefile_path , cell_size ) : # make sure paths are absolute as the working directory changes shapefile_path = os . path . abspath ( shapefile_path ) # ADD MASK with tmp_chdir ( self . project_directory ) : mask_name = '{0}.msk' . format ( self . project_manager . name ) msk_file =...
Adds a mask from a shapefile
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def set_elevation ( self , elevation_grid_path , mask_shapefile ) : # ADD ELEVATION FILE ele_file = ElevationGridFile ( project_file = self . project_manager , session = self . db_session ) ele_file . generateFromRaster ( elevation_grid_path , mask_shapefile , load_raster_to_db = self . load_rasters_to_db )
Adds elevation file to project
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def set_outlet ( self , latitude , longitude , outslope ) : self . project_manager . setOutlet ( latitude = latitude , longitude = longitude , outslope = outslope )
Adds outlet point to project
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def set_event ( self , simulation_start = None , simulation_duration = None , simulation_end = None , rain_intensity = 2 , rain_duration = timedelta ( seconds = 30 * 60 ) , event_type = 'EVENT' , ) : # ADD TEMPORTAL EVENT INFORMAITON if event_type == 'LONG_TERM' : self . event = LongTermMode ( self . project_manager , ...
Initializes event for GSSHA model
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def write ( self ) : # write data self . project_manager . writeInput ( session = self . db_session , directory = self . project_directory , name = self . project_manager . name )
Write project to directory
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def mirror ( self , handler , path_from , path_to , log_files = False ) : q = deque ( [ '' ] ) while q : path = q . popleft ( ) full_from = ( '%s/%s' % ( path_from , path ) ) if path else path_from full_to = ( '%s/%s' % ( path_to , path ) ) if path else path_to subdirs = handler ( full_from , full_to , log_files ) for ...
Recursively mirror the contents of path_from into path_to . handler should be self . mirror_to_local_no_recursion or self . mirror_to_remote_no_recursion to represent which way the files are moving .
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def linkToChannelInputFile ( self , session , channelInputFile , force = False ) : # Only perform operation if the channel input file has not been assigned or the force parameter is true if self . channelInputFile is not None and not force : return # Set the channel input file relationship self . channelInputFile = cha...
Create database relationships between the link node dataset and the channel input file .
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def _read ( self , directory , filename , session , path , name , extension , spatial , spatialReferenceID , replaceParamFile ) : # Set file extension property self . fileExtension = extension # Dictionary of keywords/cards and parse function names KEYWORDS = ( 'NUM_LINKS' , 'TIME_STEP' , 'NUM_TS' , 'START_TIME' , 'TS'...
Link Node Dataset File Read from File Method
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def _write ( self , session , openFile , replaceParamFile ) : # Retrieve TimeStep objects timeSteps = self . timeSteps # Write Lines openFile . write ( '%s\n' % self . name ) openFile . write ( 'NUM_LINKS %s\n' % self . numLinks ) openFile . write ( 'TIME_STEP %s\n' % self . timeStepInterval ) openFile . write ( 'NUM_T...
Link Node Dataset File Write to File Method
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def login ( container ) : columns , lines = shutil . get_terminal_size ( ) # Temporary try : subprocess . check_call ( [ "docker" , "exec" , "--env" , f"COLUMNS={str(columns)},LINES={str(lines)}" , # Temporary "--env" , f"LINES={str(lines)}" , # Temporary "--interactive" , "--tty" , container , "bash" , "--login" ] ) e...
Log into container .
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def _update_simulation_start ( self , simulation_start ) : self . simulation_start = simulation_start if self . simulation_duration is not None and self . simulation_start is not None : self . simulation_end = self . simulation_start + self . simulation_duration self . _update_simulation_start_cards ( )
Update GSSHA simulation start time
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def _update_simulation_start_cards ( self ) : if self . simulation_start is not None : self . _update_card ( "START_DATE" , self . simulation_start . strftime ( "%Y %m %d" ) ) self . _update_card ( "START_TIME" , self . simulation_start . strftime ( "%H %M" ) )
Update GSSHA cards for simulation start
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def _update_simulation_end_from_lsm ( self ) : te = self . l2g . xd . lsm . datetime [ - 1 ] simulation_end = te . replace ( tzinfo = utc ) . astimezone ( tz = self . tz ) . replace ( tzinfo = None ) if self . simulation_end is None : self . simulation_end = simulation_end elif self . simulation_end > simulation_end : ...
Update simulation end time from LSM
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def add_precip_file ( self , precip_file_path , interpolation_type = None ) : # precip file read in self . _update_card ( 'PRECIP_FILE' , precip_file_path , True ) if interpolation_type is None : # check if precip type exists already in card if not self . project_manager . getCard ( 'RAIN_INV_DISTANCE' ) and not self ....
Adds a precip file to project with interpolation_type
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def prepare_gag_lsm ( self , lsm_precip_data_var , lsm_precip_type , interpolation_type = None ) : if self . l2g is None : raise ValueError ( "LSM converter not loaded ..." ) # remove uniform precip cards for unif_precip_card in self . UNIFORM_PRECIP_CARDS : self . project_manager . deleteCard ( unif_precip_card , self...
Prepares Gage output for GSSHA simulation
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def prepare_rapid_streamflow ( self , path_to_rapid_qout , connection_list_file ) : ihg_filename = '{0}.ihg' . format ( self . project_manager . name ) with tmp_chdir ( self . project_manager . project_directory ) : # write out IHG file time_index_range = [ ] with RAPIDDataset ( path_to_rapid_qout , out_tzinfo = self ....
Prepares RAPID streamflow for GSSHA simulation
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def add_uniform_precip_event ( self , intensity , duration ) : self . project_manager . setCard ( 'PRECIP_UNIF' , '' ) self . project_manager . setCard ( 'RAIN_INTENSITY' , str ( intensity ) ) self . project_manager . setCard ( 'RAIN_DURATION' , str ( duration . total_seconds ( ) / 60.0 ) )
Add a uniform precip event
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def _update_gmt ( self ) : if self . simulation_start is not None : # NOTE: Because of daylight savings time, # offset result depends on time of the year offset_string = str ( self . simulation_start . replace ( tzinfo = self . tz ) . utcoffset ( ) . total_seconds ( ) / 3600. ) self . _update_card ( 'GMT' , offset_stri...
Based on timezone and start date the GMT card is updated
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def prepare_hmet_lsm ( self , lsm_data_var_map_array , hmet_ascii_output_folder = None , netcdf_file_path = None ) : if self . l2g is None : raise ValueError ( "LSM converter not loaded ..." ) with tmp_chdir ( self . project_manager . project_directory ) : # GSSHA simulation does not work after HMET data is finished se...
Prepares HMET data for GSSHA simulation from land surface model data .
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def get_remaining_width ( sample_string , max_terminal_width = None ) : if max_terminal_width is not None : available_width = min ( terminal_width ( ) , max_terminal_width ) else : available_width = terminal_width ( ) return available_width - len ( sample_string )
Returns the number of characters available if sample string were to be printed in the terminal .
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def _define_csbi ( ) : if _WindowsCSBI . CSBI is not None : return class COORD ( ctypes . Structure ) : """Windows COORD structure. http://msdn.microsoft.com/en-us/library/windows/desktop/ms682119""" _fields_ = [ ( 'X' , ctypes . c_short ) , ( 'Y' , ctypes . c_short ) ] class SmallRECT ( ctypes . Structure ) : """Windo...
Defines structs and populates _WindowsCSBI . CSBI .
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def initialize ( ) : _WindowsCSBI . _define_csbi ( ) _WindowsCSBI . HANDLE_STDERR = _WindowsCSBI . HANDLE_STDERR or _WindowsCSBI . WINDLL . kernel32 . GetStdHandle ( - 12 ) _WindowsCSBI . HANDLE_STDOUT = _WindowsCSBI . HANDLE_STDOUT or _WindowsCSBI . WINDLL . kernel32 . GetStdHandle ( - 11 ) if _WindowsCSBI . WINDLL . ...
Initializes the WINDLL resource and populated the CSBI class variable .
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def stencil ( * * kwargs ) : alnfile = kwargs . get ( 'alnfile' ) gtypefile = kwargs . get ( 'gtypefile' ) grpfile = kwargs . get ( 'grpfile' ) if grpfile is None : grpfile2chk = os . path . join ( DATA_DIR , 'ref.gene2transcripts.tsv' ) if os . path . exists ( grpfile2chk ) : grpfile = grpfile2chk else : print >> sys ...
Applying genotype calls to multi - way alignment incidence matrix
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def register_items ( self , items ) : for item in items : item . set_parent ( self ) self . items . extend ( items )
Bulk register_item .
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def endpoints ( self ) : children = [ item . endpoints ( ) for item in self . items ] return self . name , self . endpoint , children
Get all the endpoints under this node in a tree like structure .
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def absolute_name ( self ) : if self . is_root ( ) or self . parent . is_root ( ) : return utils . slugify ( self . name ) return ':' . join ( [ self . parent . absolute_name , utils . slugify ( self . name ) ] )
Get the absolute name of self .
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def absolute_url ( self ) : if self . is_root ( ) : return utils . concat_urls ( self . url ) return utils . concat_urls ( self . parent . absolute_url , self . url )
Get the absolute url of self .
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def split_tracks ( lat , lon , * args ) : tracks = [ ] lt , ln = [ lat [ 0 ] ] , [ lon [ 0 ] ] zz = [ [ z [ 0 ] ] for z in args ] for i in range ( 1 , len ( lon ) ) : lt . append ( lat [ i ] ) for z , a in zip ( zz , args ) : z . append ( a [ i ] ) d1 = abs ( lon [ i ] - lon [ i - 1 ] ) d2 = abs ( ( lon [ i - 1 ] + 360...
assumes eastward motion
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def str_rate ( self ) : # Handle special cases. if not self . _eta . started or self . _eta . stalled or not self . rate : return '--.-KiB/s' unit_rate , unit = UnitByte ( self . _eta . rate_overall if self . done else self . rate ) . auto if unit_rate >= 100 : formatter = '%d' elif unit_rate >= 10 : formatter = '%.1f'...
Returns the rate with formatting . If done returns the overall rate instead .
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def str_rate ( self ) : # Handle special cases. if not self . _eta . started or self . _eta . stalled or not self . rate : return '--- KiB/s' unit_rate , unit = UnitByte ( self . rate ) . auto_no_thousands if unit_rate >= 10 : formatter = '%d' else : formatter = '%0.1f' return '{0} {1}/s' . format ( locale . format ( f...
Returns the rate with formatting .
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def init_db ( sqlalchemy_url ) : engine = create_engine ( sqlalchemy_url ) start = time . time ( ) metadata . create_all ( engine ) return time . time ( ) - start
Initialize database with gsshapy tables
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def get_sessionmaker ( sqlalchemy_url , engine = None ) : if engine is None : engine = create_engine ( sqlalchemy_url ) return sessionmaker ( bind = engine )
Create session with database to work in
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def get_project_session ( project_name , project_directory , map_type = None ) : sqlalchemy_url , sql_engine = init_sqlite_memory ( ) gdb_sessionmaker = get_sessionmaker ( sqlalchemy_url , sql_engine ) project_manager = ProjectFile ( name = project_name , project_directory = project_directory , map_type = map_type ) re...
Load project manager and in memory sqlite db sessionmaker for GSSHA project
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def get_settings ( config_uri , section = None , defaults = None ) : loader = get_loader ( config_uri ) return loader . get_settings ( section , defaults )
Load the settings from a named section .
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def find_loaders ( scheme , protocols = None ) : # build a list of all required entry points matching_groups = [ 'plaster.loader_factory' ] if protocols : matching_groups += [ 'plaster.{0}_loader_factory' . format ( proto ) for proto in protocols ] scheme = scheme . lower ( ) # if a distribution is specified then it ov...
Find all loaders that match the requested scheme and protocols .
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def combine_dicts ( * dicts , copy = False , base = None ) : if len ( dicts ) == 1 and base is None : # Only one input dict. cd = dicts [ 0 ] . copy ( ) else : cd = { } if base is None else base # Initialize empty dict. for d in dicts : # Combine dicts. if d : # noinspection PyTypeChecker cd . update ( d ) # Return com...
Combines multiple dicts in one .
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def kk_dict ( * kk , * * adict ) : for k in kk : if isinstance ( k , dict ) : if not set ( k ) . isdisjoint ( adict ) : raise ValueError ( 'keyword argument repeated' ) adict . update ( k ) elif k in adict : raise ValueError ( 'keyword argument repeated' ) else : adict [ k ] = k return adict
Merges and defines dictionaries with values identical to keys .
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def bypass ( * inputs , copy = False ) : if len ( inputs ) == 1 : inputs = inputs [ 0 ] # Same inputs. return _copy . deepcopy ( inputs ) if copy else inputs
Returns the same arguments .
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def map_dict ( key_map , * dicts , copy = False , base = None ) : it = combine_dicts ( * dicts ) . items ( ) # Combine dicts. get = key_map . get # Namespace shortcut. # Return mapped dict. return combine_dicts ( { get ( k , k ) : v for k , v in it } , copy = copy , base = base )
Returns a dict with new key values .
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def map_list ( key_map , * inputs , copy = False , base = None ) : d = { } if base is None else base # Initialize empty dict. for m , v in zip ( key_map , inputs ) : if isinstance ( m , dict ) : map_dict ( m , v , base = d ) # Apply a map dict. elif isinstance ( m , list ) : map_list ( m , * v , base = d ) # Apply a ma...
Returns a new dict .
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def selector ( keys , dictionary , copy = False , output_type = 'dict' , allow_miss = False ) : if not allow_miss : # noinspection PyUnusedLocal def check ( key ) : return True else : def check ( key ) : return key in dictionary if output_type == 'list' : # Select as list. res = [ dictionary [ k ] for k in keys if chec...
Selects the chosen dictionary keys from the given dictionary .
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def replicate_value ( value , n = 2 , copy = True ) : return bypass ( * [ value ] * n , copy = copy )
Replicates n times the input value .
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def stack_nested_keys ( nested_dict , key = ( ) , depth = - 1 ) : if depth != 0 and hasattr ( nested_dict , 'items' ) : for k , v in nested_dict . items ( ) : yield from stack_nested_keys ( v , key = key + ( k , ) , depth = depth - 1 ) else : yield key , nested_dict
Stacks the keys of nested - dictionaries into tuples and yields a list of k - v pairs .
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def are_in_nested_dicts ( nested_dict , * keys ) : if keys : # noinspection PyBroadException try : return are_in_nested_dicts ( nested_dict [ keys [ 0 ] ] , * keys [ 1 : ] ) except Exception : # Key error or not a dict. return False return True
Nested keys are inside of nested - dictionaries .
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def combine_nested_dicts ( * nested_dicts , depth = - 1 , base = None ) : if base is None : base = { } for nested_dict in nested_dicts : for k , v in stack_nested_keys ( nested_dict , depth = depth ) : while k : # noinspection PyBroadException try : get_nested_dicts ( base , * k [ : - 1 ] ) [ k [ - 1 ] ] = v break exce...
Merge nested - dictionaries .
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def add_function ( dsp , inputs_kwargs = False , inputs_defaults = False , * * kw ) : def decorator ( f ) : dsp . add_func ( f , inputs_kwargs = inputs_kwargs , inputs_defaults = inputs_defaults , * * kw ) return f return decorator
Decorator to add a function to a dispatcher .
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def blue ( self , memo = None ) : memo = { } if memo is None else memo if self not in memo : import inspect from . blue import Blueprint , _parent_blue keys = tuple ( inspect . signature ( self . __init__ ) . parameters ) memo [ self ] = Blueprint ( * * { k : _parent_blue ( v , memo ) for k , v in self . __dict__ . ite...
Constructs a Blueprint out of the current object .
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def value_from_datadict ( self , data , files , name ) : value = super ( FileSizeWidget , self ) . value_from_datadict ( data , files , name ) if value not in EMPTY_VALUES : try : return parse_size ( value ) except ValueError : pass return value
Given a dictionary of data and this widget s name returns the value of this widget . Returns None if it s not provided .
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def connect_ssh_with_cb ( ssh_cb , user , host , auth_cb , allow_new = True , verbosity = 0 ) : with connect_ssh ( user , host , auth_cb , allow_new = True , verbosity = 0 ) as ssh : ssh_cb ( ssh )
A managed SSH session . When the session is ready we ll invoke the ssh_cb callback .
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def connect_sftp_with_cb ( sftp_cb , * args , * * kwargs ) : with _connect_sftp ( * args , * * kwargs ) as ( ssh , sftp ) : sftp_cb ( ssh , sftp )
A managed SFTP session . When the SSH session and an additional SFTP session are ready invoke the sftp_cb callback .
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def get_key_auth_cb ( key_filepath ) : def auth_cb ( ssh ) : key = ssh_pki_import_privkey_file ( key_filepath ) ssh . userauth_publickey ( key ) return auth_cb
This is just a convenience function for key - based login .
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def add_edge_fun ( graph ) : # Namespace shortcut for speed. succ , pred , node = graph . _succ , graph . _pred , graph . _node def add_edge ( u , v , * * attr ) : if v not in succ : # Add nodes. succ [ v ] , pred [ v ] , node [ v ] = { } , { } , { } succ [ u ] [ v ] = pred [ v ] [ u ] = attr # Add the edge. return add...
Returns a function that adds an edge to the graph checking only the out node .
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def remove_edge_fun ( graph ) : # Namespace shortcut for speed. rm_edge , rm_node = graph . remove_edge , graph . remove_node from networkx import is_isolate def remove_edge ( u , v ) : rm_edge ( u , v ) # Remove the edge. if is_isolate ( graph , v ) : # Check if v is isolate. rm_node ( v ) # Remove the isolate out nod...
Returns a function that removes an edge from the graph .
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def get_unused_node_id ( graph , initial_guess = 'unknown' , _format = '{}<%d>' ) : has_node = graph . has_node # Namespace shortcut for speed. n = counter ( ) # Counter. node_id_format = _format . format ( initial_guess ) # Node id format. node_id = initial_guess # Initial guess. while has_node ( node_id ) : # Check i...
Finds an unused node id in graph .
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def add_func_edges ( dsp , fun_id , nodes_bunch , edge_weights = None , input = True , data_nodes = None ) : # Namespace shortcut for speed. add_edge = _add_edge_dmap_fun ( dsp . dmap , edge_weights ) node , add_data = dsp . dmap . nodes , dsp . add_data remove_nodes = dsp . dmap . remove_nodes_from # Define an error m...
Adds function node edges .
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def _add_edge_dmap_fun ( graph , edges_weights = None ) : add = graph . add_edge # Namespace shortcut for speed. if edges_weights is not None : def add_edge ( i , o , w ) : if w in edges_weights : add ( i , o , weight = edges_weights [ w ] ) # Weighted edge. else : add ( i , o ) # Normal edge. else : # noinspection PyU...
Adds edge to the dispatcher map .
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def _get_node ( nodes , node_id , fuzzy = True ) : try : return node_id , nodes [ node_id ] # Return dispatcher node and its id. except KeyError as ex : if fuzzy : it = sorted ( nodes . items ( ) ) n = next ( ( ( k , v ) for k , v in it if node_id in k ) , EMPTY ) if n is not EMPTY : return n raise ex
Returns a dispatcher node that match the given node id .
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def get_full_pipe ( sol , base = ( ) ) : pipe , i = DspPipe ( ) , len ( base ) for p in sol . _pipe : n , s = p [ - 1 ] d = s . dsp p = { 'task' : p } if n in s . _errors : p [ 'error' ] = s . _errors [ n ] node_id = s . full_name + ( n , ) assert base == node_id [ : i ] , '%s != %s' % ( node_id [ : i ] , base ) n_id =...
Returns the full pipe of a dispatch run .
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def connectChunk ( key , chunk ) : schunk = chunk [ 0 ] . strip ( ) . split ( ) result = { 'slinkNumber' : schunk [ 1 ] , 'upSjunc' : schunk [ 2 ] , 'downSjunc' : schunk [ 3 ] } return result
Parse Storm Pipe CONNECT Chunk Method
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def get_items ( self , page = 1 , order_by = None , filters = None ) : start = ( page - 1 ) * self . per_page query = self . get_query ( ) if order_by is not None : query = query . order_by ( self . _get_field ( order_by ) ) if filters is not None : query = self . _filter ( query , filters ) return query . offset ( sta...
Fetch database for items matching .
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def _read ( self , directory , filename , session , path , name , extension , spatial , spatialReferenceID , replaceParamFile ) : # Persist name and extension of file self . name = name self . fileExtension = extension # Open file and parse into a data structure with open ( path , 'r' ) as f : self . text = f . read ( ...
Generic File Read from File Method
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def isdisjoint ( self , other ) : if isinstance ( other , _sequence_types + ( BaseMultiset , ) ) : pass elif not isinstance ( other , Container ) : other = self . _as_multiset ( other ) return all ( element not in other for element in self . _elements . keys ( ) )
r Return True if the set has no elements in common with other .
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def difference ( self , * others ) : result = self . __copy__ ( ) _elements = result . _elements _total = result . _total for other in map ( self . _as_multiset , others ) : for element , multiplicity in other . items ( ) : if element in _elements : old_multiplicity = _elements [ element ] new_multiplicity = old_multip...
r Return a new multiset with all elements from the others removed .
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def union ( self , * others ) : result = self . __copy__ ( ) _elements = result . _elements _total = result . _total for other in map ( self . _as_mapping , others ) : for element , multiplicity in other . items ( ) : old_multiplicity = _elements . get ( element , 0 ) if multiplicity > old_multiplicity : _elements [ el...
r Return a new multiset with all elements from the multiset and the others with maximal multiplicities .
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def intersection ( self , * others ) : result = self . __copy__ ( ) _elements = result . _elements _total = result . _total for other in map ( self . _as_mapping , others ) : for element , multiplicity in list ( _elements . items ( ) ) : new_multiplicity = other . get ( element , 0 ) if new_multiplicity < multiplicity ...
r Return a new multiset with elements common to the multiset and all others .
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def symmetric_difference ( self , other ) : other = self . _as_multiset ( other ) result = self . __class__ ( ) _total = 0 _elements = result . _elements self_elements = self . _elements other_elements = other . _elements dist_elements = set ( self_elements . keys ( ) ) | set ( other_elements . keys ( ) ) for element i...
r Return a new set with elements in either the set or other but not both .
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def times ( self , factor ) : if factor == 0 : return self . __class__ ( ) if factor < 0 : raise ValueError ( 'The factor must no be negative.' ) result = self . __copy__ ( ) _elements = result . _elements for element in _elements : _elements [ element ] *= factor result . _total *= factor return result
Return a new set with each element s multiplicity multiplied with the given scalar factor .
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def union_update ( self , * others ) : _elements = self . _elements _total = self . _total for other in map ( self . _as_mapping , others ) : for element , multiplicity in other . items ( ) : old_multiplicity = _elements . get ( element , 0 ) if multiplicity > old_multiplicity : _elements [ element ] = multiplicity _to...
r Update the multiset adding elements from all others using the maximum multiplicity .
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def intersection_update ( self , * others ) : for other in map ( self . _as_mapping , others ) : for element , current_count in list ( self . items ( ) ) : multiplicity = other . get ( element , 0 ) if multiplicity < current_count : self [ element ] = multiplicity
r Update the multiset keeping only elements found in it and all others .
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def difference_update ( self , * others ) : for other in map ( self . _as_multiset , others ) : for element , multiplicity in other . items ( ) : self . discard ( element , multiplicity )
r Remove all elements contained the others from this multiset .
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def symmetric_difference_update ( self , other ) : other = self . _as_multiset ( other ) elements = set ( self . distinct_elements ( ) ) | set ( other . distinct_elements ( ) ) for element in elements : multiplicity = self [ element ] other_count = other [ element ] self [ element ] = ( multiplicity - other_count if mu...
r Update the multiset to contain only elements in either this multiset or the other but not both .
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def times_update ( self , factor ) : if factor < 0 : raise ValueError ( "The factor must not be negative." ) elif factor == 0 : self . clear ( ) else : _elements = self . _elements for element in _elements : _elements [ element ] *= factor self . _total *= factor
Update each this multiset by multiplying each element s multiplicity with the given scalar factor .
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def add ( self , element , multiplicity = 1 ) : if multiplicity < 1 : raise ValueError ( "Multiplicity must be positive" ) self . _elements [ element ] += multiplicity self . _total += multiplicity
Adds an element to the multiset .
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def remove ( self , element , multiplicity = None ) : _elements = self . _elements if element not in _elements : raise KeyError old_multiplicity = _elements . get ( element , 0 ) if multiplicity is None or multiplicity >= old_multiplicity : del _elements [ element ] self . _total -= old_multiplicity elif multiplicity <...
Removes an element from the multiset .
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def discard ( self , element , multiplicity = None ) : _elements = self . _elements if element in _elements : old_multiplicity = _elements [ element ] if multiplicity is None or multiplicity >= old_multiplicity : del _elements [ element ] self . _total -= old_multiplicity elif multiplicity < 0 : raise ValueError ( "Mul...
Removes the element from the multiset .
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def shutdown_executors ( wait = True ) : return { k : shutdown_executor ( k , wait ) for k in list ( _EXECUTORS . keys ( ) ) }
Clean - up the resources of all initialized executors .
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def async_thread ( sol , args , node_attr , node_id , * a , * * kw ) : executor = _get_executor ( _executor_name ( kw . get ( 'executor' , False ) , sol . dsp ) ) if not executor : return sol . _evaluate_node ( args , node_attr , node_id , * a , * * kw ) futures = args if node_attr [ 'type' ] == 'data' and ( node_attr ...
Execute sol . _evaluate_node in an asynchronous thread .
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def await_result ( obj , timeout = None ) : from concurrent . futures import Future return obj . result ( timeout ) if isinstance ( obj , Future ) else obj
Return the result of a Future object .
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def pivot ( table , left , top , value ) : rs = { } ysort = [ ] xsort = [ ] for row in table : yaxis = tuple ( [ row [ c ] for c in left ] ) # e.g. yaxis = ('Simon',) if yaxis not in ysort : ysort . append ( yaxis ) xaxis = tuple ( [ row [ c ] for c in top ] ) # e.g. xaxis = ('2004',) if xaxis not in xsort : xsort . ap...
Creates a cross - tab or pivot table from a normalised input table . Use this function to denormalize a table of normalized records .
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def download_hrrr_for_gssha ( main_directory , forecast_start_date_string , #EX. '20160913' forecast_start_hour_string , #EX. '00' to '23' leftlon = - 180 , rightlon = 180 , toplat = 90 , bottomlat = - 90 ) : out_directory = path . join ( main_directory , forecast_start_date_string ) try : mkdir ( out_directory ) excep...
Function to download HRRR data for GSSHA
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def _patch_resource ( self , method ) : resource = self . client . get_resource ( "" , self . resource . path , method ) if not resource : raise UnsupportedResourceMethodError ( self . resource . path , method ) self . resource = resource
Patch the current RAML ResourceNode by the resource with the correct method if it exists
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def parse_raml ( self ) : if utils . is_url ( self . ramlfile ) : raml = utils . download_file ( self . ramlfile ) else : with codecs . open ( self . ramlfile , "rb" , encoding = "utf-8" ) as raml_f : raml = raml_f . read ( ) loader = ramlfications . loads ( raml ) config = ramlfications . setup_config ( self . ramlcon...
Parse RAML file
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def get_resource ( self , base_resource_path , resource_path , method = None ) : basic_path = base_resource_path + resource_path dynamic_path = base_resource_path + "{" + resource_path + "}" for resource in self . raml . resources : method_matched = method is None or resource . method == method if method_matched and ( ...
Gets a resource by it s path and optional by it s method
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def auto_no_thousands ( self ) : if self . _value >= 1000000000000 : return self . TiB , 'TiB' if self . _value >= 1000000000 : return self . GiB , 'GiB' if self . _value >= 1000000 : return self . MiB , 'MiB' if self . _value >= 1000 : return self . KiB , 'KiB' else : return self . B , 'B'
Like self . auto but calculates the next unit if > 999 . 99 .
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def error ( message , code = 1 ) : if message : print ( 'ERROR: {0}' . format ( message ) , file = sys . stderr ) else : print ( file = sys . stderr ) sys . exit ( code )
Prints an error message to stderr and exits with a status of 1 by default .
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def update_hmet_card_file ( hmet_card_file_path , new_hmet_data_path ) : hmet_card_file_path_temp = "{0}_tmp" . format ( hmet_card_file_path ) try : remove ( hmet_card_file_path_temp ) except OSError : pass copy ( hmet_card_file_path , hmet_card_file_path_temp ) with io_open ( hmet_card_file_path_temp , 'w' , newline =...
This function updates the paths in the HMET card file to the new location of the HMET data . This is necessary because the file paths are absolute and will need to be updated if moved .
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def _set_subset_indices ( self , y_min , y_max , x_min , x_max ) : y_coords , x_coords = self . xd . lsm . coords dx = self . xd . lsm . dx dy = self . xd . lsm . dy lsm_y_indices_from_y , lsm_x_indices_from_y = np . where ( ( y_coords >= ( y_min - 2 * dy ) ) & ( y_coords <= ( y_max + 2 * dy ) ) ) lsm_y_indices_from_x ...
load subset based on extent
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def _time_to_string ( self , dt , conversion_string = "%Y %m %d %H %M" ) : if self . output_timezone is not None : dt = dt . replace ( tzinfo = utc ) . astimezone ( self . output_timezone ) return dt . strftime ( conversion_string )
This converts a UTC time integer to a string
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def _load_lsm_data ( self , data_var , conversion_factor = 1 , calc_4d_method = None , calc_4d_dim = None , time_step = None ) : data = self . xd . lsm . getvar ( data_var , yslice = self . yslice , xslice = self . xslice , calc_4d_method = calc_4d_method , calc_4d_dim = calc_4d_dim ) if isinstance ( time_step , dateti...
This extracts the LSM data from a folder of netcdf files
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def _check_lsm_input ( self , data_var_map_array ) : REQUIRED_HMET_VAR_LIST = [ 'Prcp' , 'Pres' , 'Temp' , 'Clod' , 'RlHm' , 'Drad' , 'Grad' , 'WndS' ] # make sure all required variables exist given_hmet_var_list = [ ] for gssha_data_var , lsm_data_var in data_var_map_array : gssha_data_hmet_name = self . netcdf_attrib...
This function checks the input var map array to ensure the required input variables exist
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def _resample_data ( self , gssha_var ) : self . data = self . data . lsm . resample ( gssha_var , self . gssha_grid )
This function resamples the data to match the GSSHA grid IN TESTING MODE
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def _convert_data_to_hourly ( self , gssha_data_var ) : time_step_hours = np . diff ( self . data . time ) [ 0 ] / np . timedelta64 ( 1 , 'h' ) calc_function = self . _get_calc_function ( gssha_data_var ) resampled_data = None if time_step_hours < 1 : resampled_data = self . data . resample ( '1H' , dim = 'time' , how ...
This function converts the data to hourly data and then puts it into the data_np_array USED WHEN GENERATING HMET DATA ONLY
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def lsm_var_to_grid ( self , out_grid_file , lsm_data_var , gssha_convert_var , time_step = 0 , ascii_format = 'grass' ) : self . _load_converted_gssha_data_from_lsm ( gssha_convert_var , lsm_data_var , 'grid' , time_step ) gssha_data_var_name = self . netcdf_attributes [ gssha_convert_var ] [ 'gssha_name' ] self . dat...
This function takes array data and writes out a GSSHA ascii grid .
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def _write_hmet_card_file ( self , hmet_card_file_path , main_output_folder ) : with io_open ( hmet_card_file_path , 'w' ) as out_hmet_list_file : for hour_time in self . data . lsm . datetime : date_str = self . _time_to_string ( hour_time , "%Y%m%d%H" ) out_hmet_list_file . write ( u"{0}\n" . format ( path . join ( m...
This function writes the HMET_ASCII card file with ASCII file list for input to GSSHA
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def lsm_data_to_arc_ascii ( self , data_var_map_array , main_output_folder = "" ) : self . _check_lsm_input ( data_var_map_array ) if not main_output_folder : main_output_folder = path . join ( self . gssha_project_folder , "hmet_ascii_data" ) try : mkdir ( main_output_folder ) except OSError : pass log . info ( "Outpu...
Writes extracted data to Arc ASCII file format into folder to be read in by GSSHA . Also generates the HMET_ASCII card file for GSSHA in the folder named hmet_file_list . txt .
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def lsm_data_to_subset_netcdf ( self , netcdf_file_path , data_var_map_array , resample_method = None ) : self . _check_lsm_input ( data_var_map_array ) output_datasets = [ ] #DATA for gssha_var , lsm_var in data_var_map_array : if gssha_var in self . netcdf_attributes : self . _load_converted_gssha_data_from_lsm ( gss...
Writes extracted data to the NetCDF file format
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def export ( self , * * kwargs ) : query_params = { "_actions" : "false" , "_links" : "true" , "_embedded" : "true" } path_params = { } headers = { } body = None if "applicationId" in kwargs : path_params [ "applicationId" ] = kwargs [ "applicationId" ] if "query" in kwargs : body = kwargs [ "query" ] if "losantdomain"...
Creates a csv file from a query of devices and attributes over a time range .
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def _generate ( self , message ) : raw_params = { "INPUT_TEXT" : message . encode ( 'UTF8' ) , "INPUT_TYPE" : self . input_type , "OUTPUT_TYPE" : self . output_type , "LOCALE" : self . _locale , "AUDIO" : self . audio , "VOICE" : self . _voice , } params = urlencode ( raw_params ) headers = { } logging . debug ( 'maryc...
Given a message in message return a response in the appropriate format .
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def receive ( self , msg ) : if msg [ TYPE ] == TELL and msg [ METHOD ] == 'stop' : self . running = False self . future_manager . stop ( ) else : result = None try : invoke = getattr ( self . _obj , msg [ METHOD ] ) params = msg [ PARAMS ] result = invoke ( * params [ 0 ] , * * params [ 1 ] ) except Exception , e : if...
The message received from the queue specify a method of the class the actor represents . This invokes it . If the communication is an ASK sends the result back to the channel included in the message as an ASKRESPONSE .
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