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Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding
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Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding Page 1/30 Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding Konstantina Mitsi  (  kcmitsi@gmail.com ) Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) Daniel J. Richter  Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) Alicia S. Arroyo  Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) David López-Escardó  Institute of Marine Sciences Meritxell Antó  Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) Antonio Guillén  I.E.S. "Escultor Daniel" C/ Gonzalo de Berceo, 49, 26005, Logroño, La Rioja, Spain Iñaki Ruiz-Trillo  Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) Article Keywords: microeukaryotes, 18S, V4, temperate, oligomesotrophic, protists, ASVs, novelty, phylogenetic placement, parasites Posted Date: July 15th, 2022 DOI: https://doi.org/10.21203/rs.3.rs-1821485/v1 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Additional Declarations: No competing interests reported. Version of Record: A version of this preprint was published at Scientific Reports on February 22nd, 2023. See the published version at https://doi.org/10.1038/s41598-023-30228-4. Konstantina Mitsi  (  kcmitsi@gmail.com ) Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra) Konstantina Mitsi  (  kcmitsi@gmail.com ) Article Keywords: microeukaryotes, 18S, V4, temperate, oligomesotrophic, protists, ASVs, novelty, phylogenetic placement, parasites License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Additional Declarations: No competing interests reported. Additional Declarations: No competing interests reported. Page 1/30 Version of Record: A version of this preprint was published at Scientific Reports on February 22nd, 2023. See the published version at https://doi.org/10.1038/s41598-023-30228-4. Abstract Microbial eukaryotes are diverse and ecologically important organisms, yet sampling constraints have hindered the understanding of their distribution and diversity in freshwater ecosystems. Metabarcoding has provided a powerful complement to traditional limnological studies, revealing an unprecedented diversity of protists in freshwater environments. Here, we aim to expand our knowledge of the ecology and diversity of protists in lacustrine ecosystems by targeting the V4 hypervariable region of the 18S rRNA gene in water column, sediment and biofilm samples collected from Sanabria Lake (Spain) and surrounding freshwater ecosystems. Sanabria is a temperate lake, which are relatively understudied by metabarcoding in comparison to alpine and polar lakes. The phylogenetic diversity of microbial eukaryotes detected in Sanabria span all currently recognized eukaryotic supergroups, with Stramenopiles being the most abundant and diverse supergroup in all sampling sites. Parasitic microeukaryotes account for 21% of the total protist ASVs identified in our study and were dominated by Chytridiomycota, both in terms of richness and abundance in all sampling sites. Sediments, biofilms and water column samples harbour distinct microbial communities. Phylogenetic placement of poorly assigned and abundant ASVs indicates molecular novelty inside Rhodophyta, Bigyra, early-branching Nucletmycea and Apusomonadida. In addition, we report the first freshwater incidence of the previously exclusively marine genera Abeoforma and Sphaeroforma. Our results contribute to a deeper understanding of microeukaryotic communities in freshwater ecosystems, and provide the first molecular reference for future biomonitoring surveys in Sanabria Lake. Introduction The tree of eukaryotes is an ideal playground for biodiversity explorers. Although land plants, animals and fungi initially attracted most of researchers’ attention, the advent of molecular techniques in biodiversity assessment has revealed an enormous diversity of microbial eukaryotes outside these three groups (Pawlowski et al. 2012; del Campo et al. 2014). The paraphyletic assemblage of microbial eukaryotes is collectively referred to as protists (Archibald, Simpson, and Slamovits 2017). Protists are valuable from an evolutionary perspective because by studying their life traits we gain insights into the evolutionary processes that shaped the extant eukaryotic tree of life (Lang et al. 2002; del Campo et al. 2016; Grau-Bové et al. 2017; Gawryluk et al. 2019; Gabr, Grossman, and Bhattacharya 2020). In addition, protists are abundant, diverse and widespread organisms with key roles in important ecosystemic functions (Gao et al. 2019; Caron 2009; Gooday et al. 2020). However, despite their importance in different ecosystems as producers (Stoecker et al. 2009), grazers (Strom et al. 1997; W. D. Orsi et al. 2018), predators (Corno and Jürgens 2006) and parasites (Mahé et al. 2017), they have attracted less attention in comparison to their prokaryotic counterparts in environmental surveys (Caron et al. 2009). Sampling based on morphological identification combined with environmental DNA (eDNA) analyses (Ruppert, Kline, and Rahman 2019) have shown that protists are everywhere (Epstein and López-García 2008). However, they are not everywhere equally studied. Microbial eukaryotes have been widely explored in marine ecosystems (P. López-García et al. 2001; Lovejoy, Massana, and Pedrós-Alió 2006; Worden, Page 2/30 Page 2/30 Cuvelier, and Bartlett 2006; Countway et al. 2007; Massana and Pedrós-Alió 2008; Alexander et al. 2009; Stoeck et al. 2010; Logares et al. 2014; Vargas et al. 2015), whereas there are fewer studies available regarding their distribution and diversity in soils (Fell et al. 2006; Shen et al. 2014; Moon-van der Staay et al. 2006; Mahé et al. 2017) and in freshwater systems (Šlapeta, Moreira, and López-García 2005; Debroas et al. 2017). Freshwater ecosystems are more fragmented and isolated (Dodson 1992; Reche et al. 2005) in comparison to the open ocean where microbial communities are transported by currents on a global scale (Villarino et al. 2018; Richter et al. 2020). This intrinsic lower connectivity of freshwater ecosystems hinders the dispersal of freshwater organisms and increases the genetic diversity  (Dias et al. 2013). Introduction Among freshwater habitats, lakes are undoubtedly the environments with the greatest number of molecular studies available (Charvet et al. 2012; Lepère et al. 2016; Boenigk et al. 2018). High mountain lakes (Kammerlander et al. 2015; Filker et al. 2016; Boenigk et al. 2018; Stoeck et al. 2014) and polar lakes (Daniel et al. 2016; Stoof-Leichsenring et al. 2020) have been extensively studied due to their extreme conditions of temperature, nutrient availability and UV radiation. These systems have been shown to harbour a high proportion of unclassified sequences within numerous eukaryotic lineages. Fewer molecular biodiversity surveys, however, have been conducted in lakes of temperate areas (Lefranc et al. 2005; Lepère et al. 2013) . In this study, we explore the diversity of microbial eukaryotes in Sanabria Lake (Spain), a temperate lake at an altitude of 1004.1 m above sea level. Sanabria is an oligotrophic to oligomesotrophic, warm, monomictic lake with winter circulation and summer stratification. In comparison to lakes of other trophic states, oligomesotrophic lakes harbour the richest and most diverse lentic organismal communities (Lefranc et al. 2005). Sanabria Lake is the biggest natural glacial lake in the Iberian Peninsula (Vega et al. 2005) and has already been the subject of many traditional limnological studies (Taboada 1913; Margalef 1955; Aldasoro et al., 1992; Vega et al., 1992; De Hoyos, 1996; De Hoyos et al., 1998; De Hoyos and Comín, 1999; Negro, De Hoyos, and Aldasoro 2003; Luque 2002; Jambrina-Enríquez et al. 2014; Pahissa, Fernández-Enríquez, and De Hoyos 2015; Llorente and Seoane 2020) Negro et al., 2000; Luque & Julià, 2002; Rico et al., 2007; Jambrina-Enríquez et al., 2014; Pahissa et al., 2015; Llorente and Seoane 2020). However, no molecular data are currently available for this freshwater system. The aim of this study is to explore the eukaryotic microbial community of Sanabria Lake using a massively parallel sequencing approach. To do so, we targeted the V4 hypervariable region of the 18S rDNA gene. We explored the taxonomic composition of the microbial eukaryotes present in the lake and the surrounding freshwater systems, including an exploration of the protist parasite diversity. We also assessed the community structure and the compositional heterogeneity across different sampling sites, habitats and filter size fractions. Finally, we analysed our samples using a phylogenetic placement approach to quantify molecular novelty and we identified the branches of the eukaryotic tree that harbour potentially novel abundant taxa. Study area Sanabria Lake is situated in the NW of Spain (42 7' 30'' N, 06 3'00”W) between the provinces of León and Zamora at an altitude of 1004.1 m above sea level. It was formed by glacial erosion after the Würm glaciation in the Pleistocene, and it is the only lake formed by a terminal moraine in the Iberian Peninsula (Margalef 1983). Sanabria Lake belongs to the Duero River Basin that has a total drainage surface of 127.3 km2 (De Hoyos, 1996) and its main tributary is the Tera River. The surface of the lake is 3.46 km2  (De Hoyos, 1996). It is divided longitudinally into two basins, one in the west with maximum depth of 46 m and another in the east with maximum depth of 51 m (Vega et al. 2005). The shoreline length is 9518 m and the maximum width is observed in the eastern basin (1530 m) (Vega et al. 2005). Regarding its mixing characteristics, Sanabria Lake is a warm, monomictic, holomictic lake (Vega et al 1992). The mixing period extends from late November to early March, when a thermocline normally appears (Vega et al 1992). No anoxic conditions have been observed in any layer of the water column during the thermal stratification (Vega et al 1992; de Hoyos 1996; Pahissa, Fernández-Enríquez, and De Hoyos 2015). Sanabria Lake is considered as oligotrophic to oligomesotrophic in view of its low levels of chlorophyll a, nutrient concentration, phytoplanktonic biovolume values and production rates (Planas 1991; Vega et al 1992; de Hoyos 1996; Pahissa, Fernández-Enríquez, and De Hoyos 2015; Llorente and Seoane 2020; De Hoyos and Comín 1999). The oligotrophic state of the lake is a result of its geology. Its drainage basin runs over an acid rock substrate (gneiss and granodiorites) of low solubility, making the water very poor in salts (Rico et al 2007). The lake is part of the Sanabria Lake Natural Park (BOE 1978), a protected area that supports a population of 2 small villages (~ 200 residents), one in the north and the other in the west side of the lake. During the summer, the National Park receives a high influx of tourists and there are three camping sites, all located on the east side of the lake. Introduction Sanabria Lake is a protected biotope and it is under continuous monitoring. This is the first biodiversity study of Sanabria Lake that is based on molecular data, which will constitute a reference for future monitoring efforts. Page 3/30 Page 3/30 Study area The lake is part of the Sanabria Lake Natural Park (BOE 1978), a protected area that supports a population of 2 small villages (~ 200 residents), one in the north and the other in the west side of the lake. During the summer, the National Park receives a high influx of tourists and there are three camping sites, all located on the east side of the lake. Since 2012, the Duero International Biological station has raised concerns that Sanabria Lake is undergoing a eutrophication process due to contamination from a deficient sewage depuration system (Guillen, 2015). However, studies based on pigment measurements and microscopy observation of the phytoplankton community do not support the eutrophication scenario and confirm the current oligotrophic state of the lake (Pahissa, Fernández- Enríquez, and De Hoyos 2015; Llorente and Seoane 2020). Study area Since 2012, the Duero International Biological station has raised concerns that Sanabria Lake is undergoing a eutrophication process due to contamination from a deficient sewage depuration system (Guillen, 2015). However, studies based on pigment measurements and microscopy observation of the phytoplankton community do not support the eutrophication scenario and confirm the current oligotrophic state of the lake (Pahissa, Fernández- Enríquez, and De Hoyos 2015; Llorente and Seoane 2020). Sanabria Lake is situated in the NW of Spain (42 7' 30'' N, 06 3'00”W) between the provinces of León and Zamora at an altitude of 1004.1 m above sea level. It was formed by glacial erosion after the Würm glaciation in the Pleistocene, and it is the only lake formed by a terminal moraine in the Iberian Peninsula (Margalef 1983). Sanabria Lake belongs to the Duero River Basin that has a total drainage surface of 127.3 km2 (De Hoyos, 1996) and its main tributary is the Tera River. The surface of the lake is 3.46 km2  (De Hoyos, 1996). It is divided longitudinally into two basins, one in the west with maximum depth of 46 m and another in the east with maximum depth of 51 m (Vega et al. 2005). The shoreline length is 9518 m and the maximum width is observed in the eastern basin (1530 m) (Vega et al. 2005). Regarding its mixing characteristics, Sanabria Lake is a warm, monomictic, holomictic lake (Vega et al 1992). The mixing period extends from late November to early March, when a thermocline normally appears (Vega et al 1992). No anoxic conditions have been observed in any layer of the water column during the thermal stratification (Vega et al 1992; de Hoyos 1996; Pahissa, Fernández-Enríquez, and De Hoyos 2015). ( y y ) Sanabria Lake is considered as oligotrophic to oligomesotrophic in view of its low levels of chlorophyll a, nutrient concentration, phytoplanktonic biovolume values and production rates (Planas 1991; Vega et al 1992; de Hoyos 1996; Pahissa, Fernández-Enríquez, and De Hoyos 2015; Llorente and Seoane 2020; De Hoyos and Comín 1999). The oligotrophic state of the lake is a result of its geology. Its drainage basin runs over an acid rock substrate (gneiss and granodiorites) of low solubility, making the water very poor in salts (Rico et al 2007). DNA extraction, PCR amplification and sequencing We chopped the filters using sterile scissors and we homogenised the sediments and the biofilms before further processing. We extracted whole genomic DNA using the standard protocol of the PowerSoil DNA Isolation Kit (MO BIO). We amplified the V4 hypervariable region of the 18S rRNA gene using the universal eukaryotic V4 primers TAReuk454FWD1 (5'-CCAGCA(G⁄C)C(C⁄T)GCGGTAATTCC-3') and TAReukREV3 (5'- ACTTTCGTTCTTGAT(C⁄T)(A⁄G)A-3') (Stoeck et al. 2010). The amplicons were sequenced using the Illumina MiSeq platform at Centro Nacional de Análisis Genómico (CNAG, Barcelona, Spain). The sequences were demultiplexed and the barcodes were trimmed by the sequencing facility. The raw sequencing data were submitted to the European Nucleotide Archive (ENA) under the accession number PRJEB23911 (ERP105690). Sampling We sampled in March 2016 at the beginning of the thermal stratification. We chose this time point because the physicochemical conditions of the lake are homogeneous after the winter mixing period. We expected that microbial eukaryotes would be homogeneously distributed across the lake and that this even distribution would increase sampling efficiency. In addition, this is the time of the year with the least anthropogenic impact. Thus, any disturbance detected would indicate a permanent change rather than a temporal variation due to the presence of a stressor. Page 4/30 To explore the diversity and the relative abundance of microbial eukaryotes in Sanabria Lake, we collected 82 samples of water, sediment and biofilms from ten different locations. Water samples were collected from five sampling sites in the lake basin (S1-S5), a tributary stream (S6-S7) and a nearby pond (S8-S10) (Figure 1, Supplementary Table 1). The sampling was designed to include as many different habitats as possible: i) two pelagic sampling sites in the lake, one in the deepest point of the west basin (S1) and another in the deepest point of the east basin (S4), ii) the mouth of River Tera (S2), a sampling site experiencing the greatest anthropogenic impact in the studied ecosystem, iii) a coastal area in the lake near two islets (Islas Moras) (S3), iv) sulphurous waters in the east basin (S5), v) water from a tributary stream (S6) and vi) water from three nearshore sites in a nearby pond (S8-S10). For each of the sampling sites S1-S5, we collected between 0.5 and 1 litres of water from the surface, the Deep Chlorophyll Maximum (DCM) and the deepest point above the sediment. We measured standard variables (turbidity, temperature, fluorescence) in the sampling sites of the lake’s main water body (S1-S5) using a CTD SD204 (SAIV A/S) device. We prefiltered the water samples using filters of 2000 µm and 200 µm to remove debris and large multicellular organisms. Size fractions above 200 µm were discarded and not included in the study. Subsequently, we filtered sequentially using filters of 20 µm, 5 µm and 0.8 µm targeting the microplankton (20-200 μm), the nanoplankton (5-20 μm) and the pico/nanoplankton (0.8-5 μm) communities respectively. We additionally collected sediments from three sampling sites (S2, S3, S7) and 12 epilithic biofilm samples from one sampling site (S3). All samples were placed in 2ml cryovials and were stored at -80 °C prior to DNA extraction. Amplicon Sequence Variants (ASVs) analysis We analysed the raw reads following a clustering-free approach. We processed the Illumina demultiplexed paired-end sequenced dataset using the R package dada2 (Callahan et al. 2016). We visualised the read quality profiles using the function plotQualityProfile. The quality of the forward and reverse reads started decreasing after the position 250 and 240, respectively. We used the function filterAndTrim to discard low quality sequences using standard filtering parameters (maxN = 0, maxEE = Page 5/30 Page 5/30 c(2,2), truncQ = 2, rm.phix = TRUE, compress = FALSE, multithread = TRUE) and to trim the forward reads in the position 250 and the reverse reads in the position 240. We calculated the error model from our data with the function learnErrors and we visualised the estimated error rates with the function plotErrors. We then dereplicated the reads using the function derepFastq and we inferred sequence-variants from our dereplicated data using the function dada. With the function mergePairs we merged the forward and the reverse reads to obtain the full denoised sequences using the default 12 bases overlap region and we removed the paired reads that did not exactly overlap. We constructed our amplicon sequence variant table (ASV) table using makeSequenceTable, then removed chimeras with removeBimeraDenovo and finally inspected the number of reads that made it through each step of our analysis (Supplementary Table 2). We assigned taxonomy with the function assignTaxonomy that uses the Ribosomal Database Project (RDP) classifier together with the Protist Ribosomal Reference database (PR2) (v. 4.12.0) (Guillou et al. 2013) formatted for DADA2 (https://github.com/pr2database/pr2database/releases). We generated an ASVs table that contains a total of 31225 ASVs, the ASV counts per sample and their taxonomy using Biostrings::DNAStringSet and Biostrings::writeXStringSet functions. Statistical analyses We combined the taxonomy, the abundance and the metadata to generate a phyloseq object (McMurdie and Holmes 2013) (Supplementary Table 3). We generated the different phyloseq datasets used in this study by subsetting (phyloseq::subset_samples, phyloseq::subset_taxa) the initial phyloseq object (Supplementary Table 3). We plotted rarefaction curves using the function phyloseq::rarecurve to explore whether all included samples have reached saturation. Samples that did not reach saturation were removed. We used the phyloseq (McMurdie and Holmes 2013), psadd (https://rdrr.io/github/cpauvert/psadd/) and Fantaxtic (https://rdrr.io/github/gmteunisse/Fantaxtic/) R packages to plot the taxonomic composition of the datasets. (https://rdrr.io/github/cpauvert/psadd/) and Fantaxtic (https://rdrr.io/github/gmteunisse/Fantaxtic/) R packages to plot the taxonomic composition of the datasets. We rarefied (phyloseq::rarefy_even_depth) each dataset at the minimum sample depth (Supplementary Table 3) in order to simulate even numbers of reads per sample. Rarefaction enables clustering samples according to their biological origin and permits fair comparison of diversity metrics among the samples (Weiss et al. 2017). We calculated alpha and beta diversity in the subsampled datasets. Alpha diversity metrics (Observed species, Chao1, se.chao1, ACE, se.ACE, Shannon, Simpson, InvSimpson, Fisher) were calculated using the function phyloseq::estimate_richness . The significance of the difference in species richness was tested with pairwise comparisons using the Wilcoxon rank sum test, controlling for family wise error rate with the Holm–Bonferroni method (Xie et al. 2017). Evenness was calculated according to Pielou (Pielou 1966) and plotted as violin plots in the ggplot2 R package (Wickham 2009) . Beta diversity was measured using the Bray–Curtis dissimilarity statistic after converting ASVs abundances to frequencies within samples. To test the effects of habitat, sampling depth, sampling site, chlorophyll maximum and thermocline across samples, we conducted permutational multivariate analyses of variance (PERMANOVA) based on Wisconsin-standardized Bray-Curtis dissimilarities (Supplementary Table 6), using the adonis function of the vegan package. Patterns of beta diversity were assessed via Page 6/30 Page 6/30 non-metric multidimensional scaling ordination (NMDS) also on Bray-Curtis dissimilarities using the function phyloseq::ordinate and were plotted using the function phyloseq::plot_ordination. To test the significance of groups revealed by NMDS, we applied analysis of similarity (ANOSIM) tests with 999 permutations (Supplementary Table 7). non-metric multidimensional scaling ordination (NMDS) also on Bray-Curtis dissimilarities using the function phyloseq::ordinate and were plotted using the function phyloseq::plot_ordination. To test the significance of groups revealed by NMDS, we applied analysis of similarity (ANOSIM) tests with 999 permutations (Supplementary Table 7). Phylogenetic analysis Reference trees were built in RAxML (Stamatakis 2014) under the GTRGAMMA model. Node support was estimated by 100 rapid bootstrap replicates. Phylogenetic placements were produced using RAxML-EPA (Berger and Stamatakis 2011) and visualised with iTOL (Letunic and Bork 2011). Each query was placed in multiple branches until the total like_weight_ratio summed to 1. All alignments were built with MAFFT v7.309 (Katoh and Standley 2013) with automatically selected strategy according to data size and were trimmed with trimal v1.4.rev15 (Capella-Gutiérrez, Silla-Martínez, and Gabaldón 2009) using the - automated1 algorithm. The V4 hypervariable region captures the microeukaryotic diversity of Sanabria Lake To characterise the diversity of the eukaryotic community in Sanabria Lake, we sequenced the V4 hypervariable region of the 18S small subunit (SSU) rRNA gene. We chose to sequence the V4 over other hypervariable regions of the 18S rRNA gene because it provides taxonomic resolution close to that of the full-length gene (Dunthorn et al. 2012; Hu et al. 2015) and it is the most suitable hypervariable region to use for phylogenetic placement (Mahé et al. 2017). A total of 15,947,744 reads from 82 samples were filtered, dereplicated and merged resulting in 31,225 Amplicon Sequencing Variants (ASVs). The study of multicellular organisms was out of the scope of the present work and thus most multicellular organisms were discarded by using physical filters of 2000 µm and 200 µm. However, some environmental DNA (eDNA) that originates from cellular material shed by multicellular organisms into the lake was sequenced together with the community DNA of unicellular eukaryotes. For our subsequent analyses, we bioinformatically filtered out all ASVs that were assigned to animals (Division/Class = Metazoa), land plants (Division = Streptophyta) and typical terrestrial fungi (Class/Order = Ascomycota, Class/Order = Basidiomycota) (Supplementary Table 3, dataset D3). After the removal of multicellular taxa, 27,790 microeukaryotic (protist) ASVs remained. We evaluated the sampling depth and the representation of microbial eukaryotes in our samples using rarefaction curves (Supplementary Figure 1). The curves reached a plateau for all samples, indicating that most of the microbial richness present in Sanabria Lake and the surrounding freshwater systems was successfully captured by our study. Abiotic parameters indicate ecological disturbance in the east basin of Sanabria Lake Sanabria Lake is a warm monomictic lake with water circulation during winter and thermal stratification that begins in the spring and continues until the end of the summer (Vega et al 1992). Samples were collected at the beginning of the thermal stratification period when the eukaryotic community is expected to be homogeneously distributed in the water body following the winter mixing. This period also coincides with the time of the year with the lowest direct anthropogenic impact. Water temperature at the surface ranged from 7.1 °C to 8.4 °C and in the deepest sampling points ranged from 6 °C to 6.85 °C, with a mean range of 1.62 °C (Figure 1, Supplementary Table 1). These temperature measurements agree with the previously recorded temperatures during the homeothermic state of the lake that range between 4 to 7 °C (Vega et al 1992) and confirm the mixing state of the lake. We assessed the trophic state of Sanabria Lake based on water turbidity and chlorophyll a values. Water turbidity is measured in FTU (Formazin Turbidity Units) and is an indicator of the trophic state of a lake as it is related to the concentration, type and size of the suspended particles in the water (Çako, Baci, and Shena 2013). During our sampling, turbidity values in Sanabria Lake were extremely low in all the sampling sites and ranged from 0.5 to 0.85 FTU (Figure 1). These values are comparable to those in ultra- oligotrophic alpine lakes (Chanudet and Filella 2007). Chlorophyll a is a reliable indicator to assess the trophic state of a lake with high values to correspond to more eutrophic ecosystems (Poikane et al. 2014). Chlorophyll a mean values in Sanabria Lake have increased in the last fifty years (Supplementary Table 5) but they have not exceeded the levels that characterise oligotrophic lacustrine ecosystems. Together, these measurements confirm the overall oligotrophic status of the lake at the time of sampling. Page 7/30 Page 7/30 We observed that chlorophyll a values differed between east and west basin during our sampling (Figure 1). In Sanabria´s west basin (samples S1-S3), the mean value of chlorophyll a was below the reference value (1.5 μg/L). The reference value defines the equilibrium ecological state of the lake and confirms the absence of ecological disturbances. Abiotic parameters indicate ecological disturbance in the east basin of Sanabria Lake However, the mean values of chlorophyll a in Sanabria´s east basin (samples S4-S5) exceeded the reference values indicating the presence of ecological disturbance (Figure 1). Values of chlorophyll a above 4.2 μg/L are linked to a Good-Moderate ecological state and values above 7.1 μg/L are linked to a Moderate-Poor ecological state (BOE, 2015). Our results showed that there was some ecological disturbance that altered the values of chlorophyll a in the east basin of Sanabria Lake at the time of sampling. The altered values of chlorophyll a in the east basin may be related to higher anthropogenic impact due to the presence of three camping sites on this side of the lake. Chlorophyll a values measured in Sanabria´s east basin in March 2017 (Llorente and Seoane 2020) are lower than the ones presented in our study, implying that the stressor was temporal and that water quality has been restored. Spatial biodiversity patterns To evaluate the intra-sample diversity of Sanabria Lake and the surrounding water bodies, we calculated nine different alpha-diversity indices (Supplementary Table 4). To avoid potential biases in diversity Page 8/30 Page 8/30 estimates due to differences in the total number of reads, we randomly subsampled the ASVs to the minimum depth of our dataset (Supplementary Table 3, dataset D3, min sample depth = 31361 reads) before calculating the alpha-diversity indices. The number of total taxa reported was not affected by subsampling. We compared the diversity of the different water body types and we found that samples collected in the tributary stream showed significantly higher intra-sample diversity (Figure 2) and greater evenness (Supplementary Figure 10) compared to  samples from Laguna (pond) and Sanabria (lake) (Wilcoxon rank sum test P value<0.01) . Previous studies have shown that small water bodies like ponds and streams can contribute significantly to regional biodiversity of macrophytes and macroinvertebrates (Williams et al. 2004). Our data support the hypothesis that the same is true for microeukaryotes. This result pinpoints the importance of small water bodies as biodiversity reservoirs and contrasts with their relative status in national monitoring and protection strategies, where they are frequently ignored. Regarding the different habitats, sediments harbour the richest microeukaryotic communities (Figure 2). Sediments have been shown to harbour richer communities than the water column for other groups of organisms like bacteria (Eckert et al. 2020) and marine diatoms (Piredda et al. 2018). However, we cannot exclude that part of the diversity recorded in the sediments can be attributed to either dormant stages of planktonic microeukaryotes or dead cells that were recently settled from the water column. To test the effect of abiotic factors in the protist community structure we observed, we carried out permutational multivariate analysis of variance (PERMANOVA) of Bray-Curtis dissimilarities of the ASVs between communities as a function of sample spatial origin (Supplementary Table 6). All factors tested by PERMANOVA tests revealed significant differences in protist communities as a function of site (Sanabria Lake, Laguna, Stream), sampling site (S1-S10), position regarding the chlorophyll maximum (on-off), position regarding the thermocline and habitat (water column, sediments, biofilms) (Supplementary Table 6). To visualise the compositional differences in the community structure of protists we applied nonmetric multidimensional scaling (NMDS). The communities from Sanabria Lake, the tributary stream and the Laguna were clearly separated in an ordination based on sampling site (Figure 3A). Taxonomic composition of the protist community To gain an overview of the microeukaryotic taxonomic composition in the Sanabria Lake and the surrounding freshwater systems, we plotted the relative abundance of ASVs at division level (based on the PR2 taxonomy) across sampling sites (Figure 4). The phylogenetic diversity of ASVs covered all currently recognized eukaryotic supergroups (Adl et al. 2019). The group of  Stramenopiles was the most abundant supergroup in all sampling sites, accounting for the 33% of total reads in Sanabria Lake, 34% in the nearby pond (Laguna) and 40% in the tributary stream respectively (Supplementary Figures 3, 4, and 5). In addition to being abundant, Stramenopiles were diverse, encompassing 22% of total ASV richness (6,988 ASVs) (Supplementary Table 3). Among Stramenopiles, Ochrophyta was the most abundant group in all sampling sites (Supplementary Figure 6). Most Ochrophyta in the tributary stream (85%) and Laguna (81%) were affiliated with Chrysophyceae (Supplementary Figure 6), a group that is generally common in low-nutrient lakes (Nicholls and Wujek 2003). In Sanabria Lake, together with the Chrysophyceae (36%), we report a high relative abundance of Bacillariophyta (37%) and Synurophyceae (24%) within Ochrophyta, two phototrophic lineages that produce silica skeletons or scales (Supplementary Figure 6). Alveolata was the second most abundant and diverse supergroup, accounting for 26%-28% of the total eukaryotic reads in each site (Supplementary Figures 3, 4, and 5) and a total of 4,609 ASVs in the study (Supplementary Table 3). The plankton community of Sanabria Lake (excluding the surrounding freshwater systems) was dominated by Ochrophyta (in the Stramenopiles supergroup; 26%), Ciliophora (Alveolata; 14%), Dinoflagellata (Alveolata; 10%), Cercozoa (Rhizaria; 10%), Cryptophyta (10%) and unicellular Opisthokonta (7%) (Supplementary Figures 3). The presence of all these groups except for unicellular Opisthokonta was previously documented by light microscopy in Sanabria Lake (Vega et al. 1992). We further explored the taxonomic composition of Sanabria Lake by separately examining benthic and pelagic samples. The taxonomic composition of the benthic protist community, as represented by ASVs in the sediments, was dominated by Stramenopiles (36%), Alveolata (29%), Rhizaria (13%), Opisthokonta (7%), Amoebozoa (5%), Archaeplastida (3%), Hacrobia (3%) and Excavata (3%). In contrast, the planktonic microbial community was characterised by the prevalence of Hacrobia (16%) as the third most abundant eukaryotic supergroup after Stramenopiles (31%) and Alveolata (28%). The planktonic Hacrobia (Cavalier- Smith, Chao, and Lewis 2015) in Sanabria Lake included Cryptophyceae (84%), Katablepharidophyta (13%), Centroheliozoa (1.5%), Telonemia (1%) and Haptophyta (0.5%). Spatial biodiversity patterns The samples were also distributed along the first axis (NMDS1) as a function of the habitat, with water  column samples occupying the first three quadrants, biofilm samples in the third and fourth quadrant and sediment samples occupying only the fourth quadrant (Figure 3A). The community of microbial eukaryotes in the water column of Sanabria Lake was clearly segregated as a function of the size fraction of the filter and not the sampling depth (Figure 3B). This is what we expected given that we sampled at the beginning of the thermal stratification after the winter mixing at the point of maximum homogeneity of the community. As we observed that chlorophyll a values differed between east (S1,S2, and S3 sampling sites) and west basin (S4 and S5 sampling sites) (Figure 1) we investigated using a NMDS plot whether the microeukaryotic communities of east and west basin are grouped together but we did not observe such grouping  (Supplementary Figure 2) Our observations were statistically supported by ANOSIM tests (Supplementary Table 7), which showed significant and marked differences among communities according to habitat, sampling site and depth Page 9/30 (Supplementary Table 1). Our results suggest that the community structure in Sanabria Lake and the surrounding freshwaters is characterised by spatial variation. The habitat is a major factor that shapes the community structure after the winter mixing period. Sediments, biofilms and water column harbour compositionally heterogeneous microbial communities that are driven by the unique environmental parameters that characterise them. Protist parasites in a temperate oligomesotrophic lake Here we provide the first description of the taxonomic composition of the unicellular eukaryotic parasites (Supplememtary Table 3, dataset D6)  present in Sanabria Lake, the biggest natural lake in the Iberian Peninsula. Parasitic unicellular eukaryotes modulate large scale ecological processes by regulating the abundance and dynamics of their hosts population (Bråte et al. 2010). As their study by microscopy is tedious, little was known about their prevalence in freshwater systems until the advent of metabarcoding (Frenken et al. 2017). The parasites accounted for 21.3% (5,925) of the total protist ASVs identified in our study. The parasitic community composition was dominated in all sampling sites by Chytridiomycota, whose relative abundance within parasitic taxa was 29% in the tributary stream, 32% in Sanabria Lake and 42% in Laguna. The prevalence of Chytridiomycota in the pelagic zone of lakes has been previously reported (Lefèvre et al. 2007; Sime-Ngando, Lefevre, and Gleason 2011). Chytridiomycota, which includes more than 1,000 described species (Powell 1993; Shearer et al. 2007), was also the most diverse group of parasites in our study, including more than 2,200 of the 5,925 total parasite ASVs, distributed among more than 50 genera (Supplementary Figure 7). Almost half of the chytrids in terms of abundance identified in our study belonged to the order Rhizophydiales, that are host‐specific chytrids that infect various phytoplankton species, mostly diatoms (Jobard, Rasconi, and Sime-Ngando 2010; Rasconi, Jobard, and Sime-Ngando 2011). The prevalence of Rhizophydiales in the Sanabria Lake ecosystem was not surprising given that they are the most common planktonic chytrids in lacustrine ecosystems (Monchy et al. 2011). A species of Rhizophydiales was probably the causative agent of a chytrid infection in Sanabria Lake in 2014 that diminished the population of the diatom Tabellaria fenestrata and controlled an algal bloom caused by eutrophication (Llorente and Seoane 2020). The relative abundance of Perkinsea, a group of parasitic alveolates, ranged from 13% to 18% of total parasite abundance across the different sampling sites. Perkinsea were previously considered as strictly marine parasites (Norén, Moestrup, and Rehnstam-Holm 1999; Erard-Le Denn, Chrétiennot-Dinet, and Probert 2000; Villalba et al. 2004; Figueroa et al. 2008; Leander and Hoppenrath 2008) until molecular environmental surveys revealed an unprecedented diversity of these organisms in freshwaters (Richards et al. 2005; Lefèvre et al. 2008; Lepère, Domaizon, and Debroas 2008; Bråte et al. 2010). The parasitic community of each sampling site carried a unique taxonomic signature. Taxonomic composition of the protist community Excluding Cryptophyceae, this is the first record for these taxonomic groups in Sanabria Lake. (Katablepharidophyta were previously Page 10/30 Page 10/30 classified inside Cryptophyceae until electron microscopy and molecular phylogenies provided evidence to consider them as a separate taxonomic group (Okamoto and Inouye 2005).) Protist parasites in a temperate oligomesotrophic lake The parasitic community of the tributary stream was characterised by a higher proportion of Apicomplexa (17%) and Labyrinthulomycetes (12%) in comparison to the other sampling sites. Most of the apicomplexan ASVs in the tributary stream fell into eugregarines, the most abundant apicomplexan group in environmental surveys (del Campo et al. 2019). Parasitic Stramenopiles (Pseudofungi), a significant component of freshwater ecosystems (Cooper, Pillinger, and Ridge 1997), constituted the second most abundant group Page 11/30 Page 11/30 in Laguna and represented 20% of the Stramenopiles and 7% (76,070 reads) of all eukaryotes in this small pond (Supplementary Figure 6). Within the group of parasitic Stramenopiles (Supplementary Figure 6), there was observed a higher prevalence of Oomycetes that are common fish pathogens (van West 2006; Phillips et al. 2008) in Laguna in comparison to the other sampling sites. Finally, Sanabria Lake harboured a higher relative abundance of Ichthyosporea (12%, 96,491 reads) in comparison to the other sampling sites (Stream: 2%, Laguna: 1%). The majority of the Ichthyosporea in Sanabria were associated with the marine genera Abeoforma (69%), Sphaeroforma (17%) and Pseudoperkinsus (10%), none of them previously identified in a freshwater environment. To confirm the identity of the ichthyosporean ASVs in Sanabria Lake we analysed them by phylogenetic placement. We compiled a dataset that encompassed all the extant diversity of unicellular Holozoa (n=234). Half of the complete 18S rDNA gene sequences used to build the reference tree belonged to uncultured environmental taxa. A total of 132 ASVs identified as Ichthyosporea by the Ribosomal Database Project (RDP) classifier were placed into the 465 branches of the reference tree (Supplementary Figure 8). Most of the queries were placed in a clade formed by the freshwater anuran parasite Anurofeca richardsi, the marine Creolimax fragrantissima, Pseudoperkinsus tapetis and Sphaeroforma arctica, and some uncultured environmental taxa (Supplementary Figure 8). The 132 ichthyosporean queries were clustered into 17 clades in the best-hit placement tree (Supplementary Figure 9). Most of the clades were associated with freshwater sequences. Clade 4, the one formed by the larger number of sequences, was assigned to the FRESHIP2 group (del Campo and Ruiz-Trillo, 2013), expanding the known molecular diversity of these environmental taxa. Clades 13, 14 and 15 were assigned to Anurofeca richardsi and clade 9 to Caullerya mensii, another freshwater parasite that infects Daphnia pulex (Lu et al. 2020). Protist parasites in a temperate oligomesotrophic lake We identified two clades that were directly associated with marine Ichthyosporea, clade 6 that branched as sister to Abeoforma whisleri and clade 16 that branched as sister to Sphaeroforma arctica (Supplementary Figure 9). The genera Abeoforma and Sphaeroforma were previously considered exclusively marine and this is the first record that connects these taxa to freshwater habitats. As freshwater habitats are increasingly explored by molecular means, the number of taxa that have been previously reported as exclusively marine and later were found in freshwater surveys continues to expand (Bråte et al. 2010; Simon et al. 2015; Richards and Bass 2005; Annenkova, Giner, and Logares 2020; Massana et al. 2006; Simon et al. 2015; Yi et al. 2017; Mukherjee et al. 2019). Abundant and potentially novel freshwater microbial eukaryotes Metabarcoding biodiversity studies have shown that great part of the extant microbial diversity remains undocumented (Pawlowski et al. 2012; del Campo et al. 2014). In a metabarcoding survey, a species can be described as novel either because it is completely unknown to science or because the particular molecular marker database used in the study does not include available information on the species. In this study, we used the term molecular novelty to define any organism whose V4 hypervariable region of Page 12/30 Page 12/30 the 18S rRNA gene is not present in our reference database without discriminating between the two aforementioned cases. To check whether Sanabria Lake and its surrounding freshwater systems could be a potential sampling site to isolate new organisms, we investigated the molecular novelty by first selecting potentially novel ASVs. We used the Ribosomal Database Project (RDP) classifier (Wang et al. 2007) to assign taxonomy to the ASVs. The RDP classifier provides for each ASV an assignment of the best matching taxa together with a bootstrap confidence score at each taxonomic rank. This score represents the level of confidence of the taxonomic assignment at each rank, from supergroup to species. Here, we define as poorly assigned, thus potentially novel, all ASVs with bootstrap confidence score value <97 at the supergroup level. We were interested in identifying the most abundant and novel microbial eukaryotes in our study site, so we selected all ASVs with more than 1,000 reads and bootstrap confidence score value lower than the aforementioned established novelty threshold. To assign taxonomy to the queries of our dataset, we analysed them using phylogenetic placement (Figure 5). We first constructed a comprehensive eukaryotic reference tree with 618 eukaryotic taxa that encompassed all the extant eukaryotic diversity according to the latest classification of eukaryotes (Adl et al. 2019). We designed the reference tree with two criteria. First, to be inclusive in order to minimise phylogenetic placement artefacts related to taxonomic sampling and second to be non-redundant in order to be smaller and thus easier to handle in the post placement analyses. The amplicon short sequences were aligned to the reference alignment and the amplicon sequences that were not aligned in the V4 region were removed as artefacts after manual inspection. We placed a total of 113 ASV V4 queries into 1,233 branches of the reference tree. Abundant and potentially novel freshwater microbial eukaryotes Most of the ASV placements in the tree were found in the leaf nodes of Rhodophyta (Archaeplastida), Bigyra (Stramenopiles), early-branching Nucletmycea (also known as Holomycota) and Apicomplexa (Alveolata) pinpointing these clades as parts of the tree with potential novel undescribed molecular diversity (Figure 5). An elevated number of placements was spotted in the internal nodes of Dinophyta and the divergence between Opisthokonta and Apusomonadida (Figure 5). Apusomonadida is a recently defined phylum with a key phylogenetic position to understand the origin of the eukaryotic cell. Apusomonads are rarely detected in environmental studies (Purificación López-García et al. 2003; Not et al. 2008; Takishita et al. 2007; W. Orsi et al. 2012; Lesaulnier et al. 2008) and can be considerably more diverse than is currently perceived (Torruella, Moreira, and López-García 2017). We report previously undocumented diversity associated with the genera Cryptomonas and Chilomonas inside Cryptista, the naked filose amoebae of the genus Vampyrella (Endomyxa) and the frequently detected by 18S rRNA gene sequencing eukaryovorous biflagellate Aquavolon (Bass et al. 2018). No placement was recorded inside Excavata. Most of the ASV placements in the tree were found in the leaf nodes of Rhodophyta (Archaeplastida), Bigyra (Stramenopiles), early-branching Nucletmycea (also known as Holomycota) and Apicomplexa (Alveolata) pinpointing these clades as parts of the tree with potential novel undescribed molecular diversity (Figure 5). An elevated number of placements was spotted in the internal nodes of Dinophyta and the divergence between Opisthokonta and Apusomonadida (Figure 5). Apusomonadida is a recently defined phylum with a key phylogenetic position to understand the origin of the eukaryotic cell. Conclusions Page 13/30 Metabarcoding analyses of the V4 hypervariable region of the 18S rRNA gene from diverse habitats in Sanabria Lake and the surrounding freshwater ecosystems uncovered a rich and diverse microeukaryotic community. One fifth of the diversity of microeukaryotes identified in Sanabria Lake are parasites, stressing the importance of parasitic taxa in the freshwater ecosystems. Our observations regarding the taxonomic composition of the microeukaryotic community overlap with microscopical data based on morphology but expand the total biodiversity recorded in the lake by adding taxa that were either insufficiently abundant to be detected by traditional methods or inconspicuous due to lack of taxonomically informative morphological characters. Tributary stream samples were significantly more species-rich than samples from Sanabria lake and Laguna. We found that sediments harbour the greatest diversity among different habitats. We observed compositional heterogeneity among the microbial communities of Sanabria Lake and the surrounding freshwater ecosystem. Phylogenetic placement analysis showed that Sanabria Lake and the surrounding freshwater ecosystems would be good targets for future studies aiming the discovery of potential novel microeukaryotes. This is the first metabarcoding record of the diversity in Sanabria Lake. Our results expand our understanding of the microbial communities in oligomesotrophic, temperate, lacustrine ecosystems and can be used as reference for future studies in the area. Raw data are available in the European Nucleotide Archive (ENA) under the accession number PRJEB23911 (https://www.ebi.ac.uk/ena/browser/view/PRJEB23911?show=reads). Raw data are available in the European Nucleotide Archive (ENA) under the accession number PRJEB23911 (https://www.ebi.ac.uk/ena/browser/view/PRJEB23911?show=reads). Acknowledgments This work was supported by grants (BFU2017-90114-P and PID2020-120609GB-I00) funded by MCIN/AEI/ 10.13039/501100011033 and “ERDF A way of making Europe”. It has also received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. H2020-MSCA-ITN-2015-675752 (SINGEK Project, http://www.singek.eu/). This project has also received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 949745) and the support of a fellowship from ”la Caixa” Foundation (ID 100010434) with fellowship code LCF/BQ/PI19/11690008. We thank Tomás Pérez Tonda, María José Orozco López, Laura Carquijero López and David Salvador Velasco for providing help during sampling. Declarations Acknowledgments Additional information We declare that we have no competing interests. We declare that we have no competing interests. References 1. Adl, Sina M., David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, et al. 2019. “Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.” Journal of Eukaryotic Microbiology 66 (1): 4–119. https://doi.org/10.1111/jeu.12691. 2. Alexander, Eva, Alexandra Stock, Hans-Werner Breiner, Anke Behnke, John Bunge, Michail M. Yakimov, and Thorsten Stoeck. 2009. “Microbial Eukaryotes in the Hypersaline Anoxic L’Atalante Deep-Sea Basin.” Environmental Microbiology 11 (2): 360–81. https://doi.org/10.1111/j.1462- 2920.2008.01777.x. 3. Aldasoro, Juan., Caridad De Hoyos and Jose Carlos. Vega 1992. El lago de Sanabria. Estudio limnológico. Monografias de la red de espacios naturales deCastilla y León. J.M. Azcárate & P. García (eds.). Consejería de Medio Ambiente y Ordenacióndel Territorio (Junta de Castilla y León).Valladolid. 135 pp. 4. Annenkova, Nataliia V., Caterina R. Giner, and Ramiro Logares. 2020. “Tracing the Origin of Planktonic Protists in an Ancient Lake.” Microorganisms 8 (4): 543. https://doi.org/10.3390/microorganisms8040543. 5. Archibald, John M., Alastair G.B. Simpson, and Claudio H. Slamovits, eds. 2017. Handbook of the Protists. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-28149-0. 5. Archibald, John M., Alastair G.B. Simpson, and Claudio H. Slamovits, eds. 2017. Handbook of the Protists. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-28149-0. 6. Bass, David, Denis Victorovich Tikhonenkov, Rachel Foster, Patricia Dyal, Jan Janouškovec, Patrick J. Keeling, Michelle Gardner, et al. 2018. “Rhizarian ‘Novel Clade 10’ Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, Including Aquavolon n. Gen.” Journal of Eukaryotic Microbiology 65 (6): 828–42. https://doi.org/10.1111/jeu.12524. 6. Bass, David, Denis Victorovich Tikhonenkov, Rachel Foster, Patricia Dyal, Jan Janouškovec, Patrick J. Keeling, Michelle Gardner, et al. 2018. “Rhizarian ‘Novel Clade 10’ Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, Including Aquavolon n. Gen.” Journal of Eukaryotic Microbiology 65 (6): 828–42. https://doi.org/10.1111/jeu.12524. 7. Berger, Simon A., and Alexandros Stamatakis. 2011. “Aligning Short Reads to Reference Alignments and Trees.” Bioinformatics 27 (15): 2068–75. https://doi.org/10.1093/bioinformatics/btr320. 7. Berger, Simon A., and Alexandros Stamatakis. 2011. “Aligning Short Reads to Reference Alignments and Trees.” Bioinformatics 27 (15): 2068–75. https://doi.org/10.1093/bioinformatics/btr320. 8. BOE. 1978. REAL DECRETO 3061/1978, de 27 de octubre, de Declaración del Parque Natural del Lago de Sanabria y sus alrededores (BOE núm. 310, de 28-12-78). 8. BOE. 1978. REAL DECRETO 3061/1978, de 27 de octubre, de Declaración del Parque Natural del Lago de Sanabria y sus alrededores (BOE núm. 310, de 28-12-78). 9. BOE. 2015. Authors' contributions K.M. designed and conducted the data analyses, interpreted the results, designed the figures and wrote the draft and the revised manuscript. A.S.A., D.L.E, M.A., and A.G. collected the data and revised the manuscript. D.J.R. interpreted the results and revised the manuscript. I.R.-T. conceived and designed the study, supervised the work and revised the manuscript. All authors approved the final version of the Page 14/30 manuscript and agreed to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. manuscript and agreed to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. Additional information References Real Decreto 817/2015 del 11 de septiembre, por el que se    establecen los criterios de seguimiento y evaluación del estado de las aguas superficiales y las normas de calidad ambiental. 9. BOE. 2015. Real Decreto 817/2015 del 11 de septiembre, por el que se    establecen los criterios de seguimiento y evaluación del estado de las aguas superficiales y las normas de calidad ambiental. 10. Boenigk, Jens, Sabina Wodniok, Christina Bock, Daniela Beisser, Christopher Hempel, Lars Grossmann, Anja Lange, and Manfred Jensen. 2018. “Geographic Distance and Mountain Ranges Structure Freshwater Protist Communities on a European Scalе.” Metabarcoding and Metagenomics 2 (2). https://doi.org/10.3897/mbmg.2.21519. 10. Boenigk, Jens, Sabina Wodniok, Christina Bock, Daniela Beisser, Christopher Hempel, Lars Grossmann, Anja Lange, and Manfred Jensen. 2018. “Geographic Distance and Mountain Ranges Structure Freshwater Protist Communities on a European Scalе.” Metabarcoding and Metagenomics 2 (2). https://doi.org/10.3897/mbmg.2.21519. Page 15/30 Page 15/30 11. Bråte, Jon, Ramiro Logares, Cédric Berney, Dan Kristofer Ree, Dag Klaveness, Kjetill S. Jakobsen, and Kamran Shalchian-Tabrizi. 2010. “Freshwater Perkinsea and Marine-Freshwater Colonizations Revealed by Pyrosequencing and Phylogeny of Environmental RDNA.” The ISME Journal 4 (9): 1144–53. https://doi.org/10.1038/ismej.2010.39. 12. Çako, Veledin, Syrja Baci, and Mersin Shena. 2013. “Water Turbidity as One of the Trophic State Indices in Butrinti Lake.” Journal of Water Resource and Protection 05 (January): 1144–48. https://doi.org/10.4236/jwarp.2013.512120. 13. Callahan, Benjamin J., Paul J. McMurdie, Michael J. Rosen, Andrew W. Han, Amy Jo A. Johnson, and Susan P. Holmes. 2016. “DADA2: High-Resolution Sample Inference from Illumina Amplicon Data.” Nature Methods 13 (7): 581–83. https://doi.org/10.1038/nmeth.3869. 14. Campo, Javier del, Laure Guillou, Elisabeth Hehenberger, Ramiro Logares, Purificación López-García, and Ramon Massana. 2016. “Ecological and Evolutionary Significance of Novel Protist Lineages.” European Journal of Protistology 55 (Pt A): 4–11. https://doi.org/10.1016/j.ejop.2016.02.002. 15. Campo, Javier del, Thierry J. Heger, Raquel Rodríguez-Martínez, Alexandra Z. Worden, Thomas A. Richards, Ramon Massana, and Patrick J. Keeling. 2019. “Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework.” Frontiers in Microbiology 10. https://doi.org/10.3389/fmicb.2019.02373. 16. Campo, Javier del, Michael E. Sieracki, Robert Molestina, Patrick Keeling, Ramon Massana, and Iñaki Ruiz-Trillo. 2014. “The Others: Our Biased Perspective of Eukaryotic Genomes.” Trends in Ecology & Evolution 29 (5): 252–59. https://doi.org/10.1016/j.tree.2014.03.006. 17. Capella-Gutiérrez, Salvador, José M. Silla-Martínez, and Toni Gabaldón. 2009. “TrimAl: A Tool for Automated Alignment Trimming in Large-Scale Phylogenetic Analyses.” Bioinformatics 25 (15): 1972–73. https://doi.org/10.1093/bioinformatics/btp348. 18. Caron, David A. 2009. References “New Accomplishments and Approaches for Assessing Protistan Diversity and Ecology in Natural Ecosystems.” BioScience 59 (4): 287–99. https://doi.org/10.1525/bio.2009.59.4.7. 19. Caron, David A., Alexandra Z. Worden, Peter D. Countway, Elif Demir, and Karla B. Heidelberg. 2009. “Protists Are Microbes Too: A Perspective.” The ISME Journal 3 (1): 4–12. https://doi.org/10.1038/ismej.2008.101. 20. Cavalier-Smith, Thomas, Ema E. Chao, and Rhodri Lewis. 2015. “Multiple Origins of Heliozoa from Flagellate Ancestors: New Cryptist Subphylum Corbihelia, Superclass Corbistoma, and Monophyly of Haptista, Cryptista, Hacrobia and Chromista.” Molecular Phylogenetics and Evolution 93 (December): 331–62. https://doi.org/10.1016/j.ympev.2015.07.004. 21. Chanudet, Vincent, and Montserrat Filella. 2007. “Submicron Organic Matter in a Peri-Alpine, Ultra- Oligotrophic Lake.” Organic Geochemistry - ORG GEOCHEM 38 (April). https://doi.org/10.1016/j.orggeochem.2007.02.011. Page 16/30 22. Charvet, Sophie, Warwick F. Vincent, André M. Comeau, and Connie Lovejoy. 2012. “Pyrosequencing Analysis of the Protist Communities in a High Arctic Meromictic Lake: DNA Preservation and Change.” Frontiers in Microbiology 3. https://doi.org/10.3389/fmicb.2012.00422. 23. Cooper, Jerry A., Judith M. Pillinger, and Irene Ridge. 1997. “Barley Straw Inhibits Growth of Some Aquatic Saprolegniaceous Fungi.” Aquaculture 156 (1): 157–63. https://doi.org/10.1016/S0044- 8486(97)00082-3. 24. Corno, Gianluca, and Klaus Jürgens. 2006. “Direct and Indirect Effects of Protist Predation on Population Size Structure of a Bacterial Strain with High Phenotypic Plasticity.” Applied and Environmental Microbiology 72 (1): 78–86. https://doi.org/10.1128/AEM.72.1.78-86.2006. 25. Countway, Peter D., Rebecca J. Gast, Mark R. Dennett, Pratik Savai, Julie M. Rose, and David A. Caron. 2007. “Distinct Protistan Assemblages Characterize the Euphotic Zone and Deep Sea (2500 m) of the Western North Atlantic (Sargasso Sea and Gulf Stream).” Environmental Microbiology 9 (5): 1219–32. https://doi.org/10.1111/j.1462-2920.2007.01243.x. 26. Daniel, Aguirre de Cárcer, Carlos Pedrós-Alió, David A. Pearce, and Antonio Alcamí. 2016. “Composition and Interactions among Bacterial, Microeukaryotic, and T4-like Viral Assemblages in Lakes from Both Polar Zones.” Frontiers in Microbiology 7. https://doi.org/10.3389/fmicb.2016.00337. 27. De Hoyos, Caridad. 1996. Limnología del lago de Sanabria. Variabilidad interanual del fitoplancton. Tesis Doctoral. Universidad de Salamanca. 438 pp. 27. De Hoyos, Caridad. 1996. Limnología del lago de Sanabria. Variabilidad interanual del fitoplancton. Tesis Doctoral. Universidad de Salamanca. 438 pp. 28. De Hoyos, Caridad, Juan J. Aldasoro, Manuel Toro & Francisco A.Comín. 1998. Specific composition and ecology of chrysophyte    flagellates in Lake Sanabria (NW Spain). Hydrobiologia,     369/370: 287-295. DOI: 10.1023/A:1017044908663 28. De Hoyos, Caridad, Juan J. Aldasoro, Manuel Toro & Francisco A.Comín. 1998. Specific composition and ecology of chrysophyte    flagellates in Lake Sanabria (NW Spain). Hydrobiologia,     369/370: 287-295. DOI: 10.1023/A:1017044908663 29. De Hoyos, Caridad, and Francisco Comín. 1999. References “First Report of Parasitism on the Toxic Dinoflagellate Alexandrium Minutum Halim.” Estuarine, Coastal and Shelf Science, Visualization in Marine Science, 50 (1): 109–13. https://doi.org/10.1006/ecss.1999.0537. 37. Erard-Le Denn, E., M. -J. Chrétiennot-Dinet, and I. Probert. 2000. “First Report of Parasitism on the Toxic Dinoflagellate Alexandrium Minutum Halim.” Estuarine, Coastal and Shelf Science, Visualization in Marine Science, 50 (1): 109–13. https://doi.org/10.1006/ecss.1999.0537. 38. Fell, Jack W., Gloria Scorzetti, Laurie Connell, and Scott Craig. 2006. “Biodiversity of Micro- Eukaryotes in Antarctic Dry Valley Soils with <5% Soil Moisture.” Soil Biology and Biochemistry, Antarctic Victoria Land Soil Ecology, 38 (10): 3107–19. https://doi.org/10.1016/j.soilbio.2006.01.014. 38. Fell, Jack W., Gloria Scorzetti, Laurie Connell, and Scott Craig. 2006. “Biodiversity of Micro- Eukaryotes in Antarctic Dry Valley Soils with <5% Soil Moisture.” Soil Biology and Biochemistry, Antarctic Victoria Land Soil Ecology, 38 (10): 3107–19. https://doi.org/10.1016/j.soilbio.2006.01.014. 39. Figueroa, Rosa Isabel, Esther Garcés, Ramon Massana, and Jordi Camp. 2008. “Description, Host- Specificity, and Strain Selectivity of the Dinoflagellate Parasite Parvilucifera Sinerae Sp.Nov. (Perkinsozoa),” October. https://doi.org/10.1016/j.protis.2008.05.003. 39. Figueroa, Rosa Isabel, Esther Garcés, Ramon Massana, and Jordi Camp. 2008. “Description, Host- Specificity, and Strain Selectivity of the Dinoflagellate Parasite Parvilucifera Sinerae Sp.Nov. (Perkinsozoa),” October. https://doi.org/10.1016/j.protis.2008.05.003. 40. Filker, Sabine, Ruben Sommaruga, Irma Vila, and Thorsten Stoeck. 2016. “Microbial Eukaryote Plankton Communities of High-Mountain Lakes from Three Continents Exhibit Strong Biogeographic Patterns.” Molecular Ecology 25 (10): 2286–2301. https://doi.org/10.1111/mec.13633. 40. Filker, Sabine, Ruben Sommaruga, Irma Vila, and Thorsten Stoeck. 2016. “Microbial Eukaryote Plankton Communities of High-Mountain Lakes from Three Continents Exhibit Strong Biogeographic Patterns.” Molecular Ecology 25 (10): 2286–2301. https://doi.org/10.1111/mec.13633. 41. Frenken, Thijs, Elisabet Alacid, Stella A. Berger, Elizabeth C. Bourne, Mélanie Gerphagnon, Hans-Peter Grossart, Alena S. Gsell, et al. 2017. “Integrating Chytrid Fungal Parasites into Plankton Ecology: Research Gaps and Needs.” Environmental Microbiology 19 (10): 3802–22. https://doi.org/10.1111/1462-2920.13827. 42. Gabr, Arwa, Arthur R. Grossman, and Debashish Bhattacharya. 2020. “Paulinella, a Model for Understanding Plastid Primary Endosymbiosis.” Journal of Phycology 56 (4): 837–43. https://doi.org/10.1111/jpy.13003. 43. Gao, Zhilei, Ida Karlsson, Stefan Geisen, George Kowalchuk, and Alexandre Jousset. 2019. “Protists: Puppet Masters of the Rhizosphere Microbiome.” Trends in Plant Science 24 (2): 165–76. https://doi.org/10.1016/j.tplants.2018.10.011. 44. Gawryluk, Ryan M. R., Denis V. Tikhonenkov, Elisabeth Hehenberger, Filip Husnik, Alexander P. Mylnikov, and Patrick J. Keeling. 2019. “Non-Photosynthetic Predators Are Sister to Red Algae.” Nature 572 (7768): 240–43. https://doi.org/10.1038/s41586-019-1398-6. 45. Gooday, Andrew J., Alexandra Schoenle, John R. Dolan, and Hartmut Arndt. 2020. References “The Importance of Inter-Annual Variability for Management.” Hydrobiologia 395–396 (February): 281–91. https://doi.org/10.1023/A:1017030526231. 29. De Hoyos, Caridad, and Francisco Comín. 1999. “The Importance of Inter-Annual Variability for Management.” Hydrobiologia 395–396 (February): 281–91. https://doi.org/10.1023/A:1017030526231. 30. Debroas, Didier, Isabelle Domaizon, Jean-Francois Humbert, Ludwig Jardillier, Cécile Lepère, Anne Oudart, and Najwa Taïb. 2017. “Overview of Freshwater Microbial Eukaryotes Diversity: A First Analysis of Publicly Available Metabarcoding Data.” FEMS Microbiology Ecology 93 (4). https://doi.org/10.1093/femsec/fix023. 30. Debroas, Didier, Isabelle Domaizon, Jean-Francois Humbert, Ludwig Jardillier, Cécile Lepère, Anne Oudart, and Najwa Taïb. 2017. “Overview of Freshwater Microbial Eukaryotes Diversity: A First Analysis of Publicly Available Metabarcoding Data.” FEMS Microbiology Ecology 93 (4). https://doi.org/10.1093/femsec/fix023. 31. del Campo, Javier and Iñaki Ruiz-Trillo. 2013 “Environmental Survey Meta-analysis Reveals Hidden Diversity among Unicellular Opisthokonts”, Molecular Biology and Evolution, Volume 30, Issue 4, April 2013, Pages 802–805, https://doi.org/10.1093/molbev/mst006 31. del Campo, Javier and Iñaki Ruiz-Trillo. 2013 “Environmental Survey Meta-analysis Reveals Hidden Diversity among Unicellular Opisthokonts”, Molecular Biology and Evolution, Volume 30, Issue 4, April 2013, Pages 802–805, https://doi.org/10.1093/molbev/mst006 32. Dias, Murilo S., Jean-François Cornu, Thierry Oberdorff, Carlos A. Lasso, and Pablo A. Tedesco. 2013 “Natural Fragmentation in River Networks as a Driver of Speciation for Freshwater Fishes.” Ecography 36 (6): 683–89. https://doi.org/10.1111/j.1600-0587.2012.07724.x. 32. Dias, Murilo S., Jean-François Cornu, Thierry Oberdorff, Carlos A. Lasso, and Pablo A. Tedesco. 2013. “Natural Fragmentation in River Networks as a Driver of Speciation for Freshwater Fishes.” Ecography 36 (6): 683–89. https://doi.org/10.1111/j.1600-0587.2012.07724.x. 33. Dodson, Stanley. 1992. “Predicting Crustacean Zooplankton Species Richness.” Limnology and Oceanography 37 (4): 848–56. https://doi.org/10.4319/lo.1992.37.4.0848. 33. Dodson, Stanley. 1992. “Predicting Crustacean Zooplankton Species Richness.” Limnology and Oceanography 37 (4): 848–56. https://doi.org/10.4319/lo.1992.37.4.0848. Page 17/30 Page 17/30 34. Dunthorn, M., J. Klier, J. Bunge, and T. Stoeck. 2012. “Comparing the Hyper‐Variable V4 and V9 Regions of the Small Subunit RDNA for Assessment of Ciliate Environmental Diversity.” The Journal of Eukaryotic Microbiology. https://doi.org/10.1111/j.1550-7408.2011.00602.x. 35. Eckert, Ester M., Stefano Amalfitano, Andrea Di Cesare, Caterina Manzari, Gianluca Corno, and Diego Fontaneto. 2020. “Different Substrates within a Lake Harbour Connected but Specialised Microbial Communities.” Hydrobiologia 847 (7): 1689–1704. https://doi.org/10.1007/s10750-019-04068-1. 36. Epstein, Slava, and Purificación López-García. 2008. “‘Missing’ Protists: A Molecular Prospective.” Biodiversity and Conservation 17 (2): 261–76. https://doi.org/10.1007/s10531-007-9250-y. 36. Epstein, Slava, and Purificación López-García. 2008. “‘Missing’ Protists: A Molecular Prospective.” Biodiversity and Conservation 17 (2): 261–76. https://doi.org/10.1007/s10531-007-9250-y. 37. Erard-Le Denn, E., M. -J. Chrétiennot-Dinet, and I. Probert. 2000. References “Protist Diversity and Function in the Dark Ocean – Challenging the Paradigms of Deep-Sea Ecology with Special Emphasis on Foraminiferans and Naked Protists.” European Journal of Protistology 75 (August): 125721. https://doi.org/10.1016/j.ejop.2020.125721. Page 18/30 Page 18/30 46. Grau-Bové, Xavier, Guifré Torruella, Stuart Donachie, Hiroshi Suga, Guy Leonard, Thomas A Richards, and Iñaki Ruiz-Trillo. 2017. “Dynamics of Genomic Innovation in the Unicellular Ancestry of Animals.” Edited by Diethard Tautz. ELife 6 (July): e26036. https://doi.org/10.7554/eLife.26036. 47. Guillén, Antonio 2015. Lago de Sanabria 2015, presente y futuro de un ecosistema en desequilibrio. 47. Guillén, Antonio 2015. Lago de Sanabria 2015, presente y futuro de un ecosistema en desequilibrio. 48. Guillou, Laure, Dipankar Bachar, Stéphane Audic, David Bass, Cédric Berney, Lucie Bittner, Christophe Boutte, et al. 2013. “The Protist Ribosomal Reference Database (PR2): A Catalog of Unicellular Eukaryote Small Sub-Unit RRNA Sequences with Curated Taxonomy.” Nucleic Acids Research 41 (Database issue): D597-604. https://doi.org/10.1093/nar/gks1160. 48. Guillou, Laure, Dipankar Bachar, Stéphane Audic, David Bass, Cédric Berney, Lucie Bittner, Christophe Boutte, et al. 2013. “The Protist Ribosomal Reference Database (PR2): A Catalog of Unicellular Eukaryote Small Sub-Unit RRNA Sequences with Curated Taxonomy.” Nucleic Acids Research 41 (Database issue): D597-604. https://doi.org/10.1093/nar/gks1160. 49. Hu, Sarah K., Zhenfeng Liu, Alle A. Y. Lie, Peter D. Countway, Diane Y. Kim, Adriane C. Jones, Rebecca J. Gast, et al. 2015. “Estimating Protistan Diversity Using High-Throughput Sequencing.” The Journal of Eukaryotic Microbiology 62 (5): 688–93. https://doi.org/10.1111/jeu.12217. 49. Hu, Sarah K., Zhenfeng Liu, Alle A. Y. Lie, Peter D. Countway, Diane Y. Kim, Adriane C. Jones, Rebecca J. Gast, et al. 2015. “Estimating Protistan Diversity Using High-Throughput Sequencing.” The Journal of Eukaryotic Microbiology 62 (5): 688–93. https://doi.org/10.1111/jeu.12217. 50. Jambrina-Enríquez, Margarita, Mayte Rico, Ana Moreno, Manel Leira, Patricia Bernárdez, Ricardo Prego, Clemente Recio, and Blas L. Valero-Garcés. 2014. “Timing of Deglaciation and Postglacial Environmental Dynamics in NW Iberia: The Sanabria Lake Record.” Quaternary Science Reviews 94 (June): 136–58. https://doi.org/10.1016/j.quascirev.2014.04.018. 51. Jobard, Marlene, Serena Rasconi, and Télesphore Sime-Ngando. 2010. “Diversity and Functions of Microscopic Fungi: A Missing Component in Pelagic Food Webs.” Aquatic Sciences 72 (June). https://doi.org/10.1007/s00027-010-0133-z. 52. Kammerlander, Barbara, Hans-Werner Breiner, Sabine Filker, Ruben Sommaruga, Bettina Sonntag, and Thorsten Stoeck. 2015. “High Diversity of Protistan Plankton Communities in Remote High Mountain Lakes in the European Alps and the Himalayan Mountains.” FEMS Microbiology Ecology 91 (4). https://doi.org/10.1093/femsec/fiv010. 53. Katoh, Kazutaka, and Daron M. Standley. 2013. References “MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability.” Molecular Biology and Evolution 30 (4): 772–80. https://doi.org/10.1093/molbev/mst010. 54. Lang, B. F., C. O’Kelly, T. Nerad, M. W. Gray, and G. Burger. 2002. “The Closest Unicellular Relatives of Animals.” Current Biology 12 (20): 1773–78. https://doi.org/10.1016/S0960-9822(02)01187-9. 55. Leander, Brian S., and Mona Hoppenrath. 2008. “Ultrastructure of a Novel Tube-Forming, Intracellular Parasite of Dinoflagellates: Parvilucifera Prorocentri Sp. Nov. (Alveolata, Myzozoa).” European Journal of Protistology 44 (1): 55–70. https://doi.org/10.1016/j.ejop.2007.08.004. 56. Lefèvre, Emilie, Corinne Bardot, Christophe Noël, Jean-François Carrias, Eric Viscogliosi, Christian Amblard, and Télesphore Sime‐Ngando. 2007. “Unveiling Fungal Zooflagellates as Members of Freshwater Picoeukaryotes: Evidence from a Molecular Diversity Study in a Deep Meromictic Lake.” Environmental Microbiology 9 (1): 61–71. https://doi.org/10.1111/j.1462-2920.2006.01111.x. 57. Lefèvre, Emilie, Balbine Roussel, Christian Amblard, and Télesphore Sime-Ngando. 2008. “The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton.” PLOS ONE 3 (6): e2324. https://doi.org/10.1371/journal.pone.0002324. 57. Lefèvre, Emilie, Balbine Roussel, Christian Amblard, and Télesphore Sime-Ngando. 2008. “The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton.” PLOS ONE 3 (6): e2324. https://doi.org/10.1371/journal.pone.0002324. Page 19/30 Page 19/30 58. Lefranc, Marie, Aurélie Thénot, Cécile Lepère, and Didier Debroas. 2005. “Genetic Diversity of Small Eukaryotes in Lakes Differing by Their Trophic Status.” Applied and Environmental Microbiology 71 (10): 5935–42. https://doi.org/10.1128/AEM.71.10.5935-5942.2005. 59. Lepère, Cécile, Isabelle Domaizon, and Didier Debroas. 2008. “Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community.” Applied and Environmental Microbiology 74 (10): 2940–49. https://doi.org/10.1128/AEM.01156-07. 60. Lepère, Cécile, Isabelle Domaizon, Mylène Hugoni, Agnès Vellet, and Didier Debroas. 2016. “Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France).” Frontiers in Microbiology 7. https://doi.org/10.3389/fmicb.2016.00130. 61. Lepère, Cécile, Isabelle Domaizon, Najwa Taïb, Jean-François Mangot, Gisèle Bronner, Delphine Boucher, and Didier Debroas. 2013. “Geographic Distance and Ecosystem Size Determine the Distribution of Smallest Protists in Lacustrine Ecosystems.” FEMS Microbiology Ecology 85 (1): 85– 94. https://doi.org/10.1111/1574-6941.12100. 62. Lesaulnier, Celine, Dimitris Papamichail, Sean McCorkle, Bernard Ollivier, Steven Skiena, Safiyh Taghavi, Donald Zak, and Daniel van der Lelie. 2008. “Elevated Atmospheric CO2 Affects Soil Microbial Diversity Associated with Trembling Aspen.” Environmental Microbiology 10 (4): 926–41. https://doi.org/10.1111/j.1462-2920.2007.01512.x. 63. Letunic, Ivica, and Peer Bork. 2011. “Interactive Tree Of Life v2: Online Annotation and Display of Phylogenetic Trees Made Easy.” Nucleic Acids Research 39 (Web Server issue): W475-478. https://doi.org/10.1093/nar/gkr201. 64. Llorente, Alfredo, and Sergio Seoane. 2020. References “Changes in the Phytoplankton Community Structure in a Monomictic Temperate Lake.” Limnetica 39 (1): 469–85. https://doi.org/10.23818/limn.39.30. 65. Logares, Ramiro, Stéphane Audic, David Bass, Lucie Bittner, Christophe Boutte, Richard Christen, Jean-Michel Claverie, et al. 2014. “Patterns of Rare and Abundant Marine Microbial Eukaryotes.” Current Biology 24 (8): 813–21. https://doi.org/10.1016/j.cub.2014.02.050. 66. López-García, P., F. Rodríguez-Valera, C. Pedrós-Alió, and D. Moreira. 2001. “Unexpected Diversity of Small Eukaryotes in Deep-Sea Antarctic Plankton.” Nature 409 (6820): 603–7. https://doi.org/10.1038/35054537. 67. López-García, Purificación, Hervé Philippe, Françoise Gail, and David Moreira. 2003. “Autochthonous Eukaryotic Diversity in Hydrothermal Sediment and Experimental Microcolonizers at the Mid-Atlantic Ridge.” Proceedings of the National Academy of Sciences of the United States of America 100 (2): 697–702. https://doi.org/10.1073/pnas.0235779100. 67. López-García, Purificación, Hervé Philippe, Françoise Gail, and David Moreira. 2003. “Autochthonous Eukaryotic Diversity in Hydrothermal Sediment and Experimental Microcolonizers at the Mid-Atlantic Ridge.” Proceedings of the National Academy of Sciences of the United States of America 100 (2): 697–702. https://doi.org/10.1073/pnas.0235779100. 68. Lovejoy, C., R. Massana, and C. Pedrós-Alió. 2006. “Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas.” Applied and Environmental Microbiology 72 (5): 3085–95. https://doi.org/10.1128/AEM.72.5.3085-3095.2006. 68. Lovejoy, C., R. Massana, and C. Pedrós-Alió. 2006. “Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas.” Applied and Environmental Microbiology 72 (5): 3085–95. https://doi.org/10.1128/AEM.72.5.3085-3095.2006. 69. Lu, Yameng, Eduard Ocaña-Pallarès, David López-Escardó, Stuart R. Dennis, Michael T. Monaghan, Iñaki Ruiz-Trillo, Piet Spaak, and Justyna Wolinska. 2020. “Revisiting the Phylogenetic Position of Caullerya Mesnili (Ichthyosporea), a Common Daphnia Parasite, Based on 22 Protein-Coding Genes.” 69. Lu, Yameng, Eduard Ocaña-Pallarès, David López-Escardó, Stuart R. Dennis, Michael T. Monaghan, Iñaki Ruiz-Trillo, Piet Spaak, and Justyna Wolinska. 2020. “Revisiting the Phylogenetic Position of Caullerya Mesnili (Ichthyosporea), a Common Daphnia Parasite, Based on 22 Protein-Coding Genes.” Page 20/30 Page 20/30 Molecular Phylogenetics and Evolution 151 (October): 106891. https://doi.org/10.1016/j.ympev.2020.106891. 70. Luque, J.A. 2002. “Lake Sediment Response to Land-Use and Climate Change during the Last 1000 Years in the Oligotrophic Lake Sanabria (Northwest of Iberian Peninsula).” Sedimentary Geology 148 (April): 343–55. https://doi.org/10.1016/S0037-0738(01)00225-1. 70. Luque, J.A. 2002. “Lake Sediment Response to Land-Use and Climate Change during the Last 1000 Years in the Oligotrophic Lake Sanabria (Northwest of Iberian Peninsula).” Sedimentary Geology 148 (April): 343–55. https://doi.org/10.1016/S0037-0738(01)00225-1. 71. Mahé, Frédéric, Colomban de Vargas, David Bass, Lucas Czech, Alexandros Stamatakis, Enrique Lara, David Singer, et al. 2017. References “Parasites Dominate Hyperdiverse Soil Protist Communities in Neotropical Rainforests.” Nature Ecology & Evolution 1 (4): 91. https://doi.org/10.1038/s41559-017- 0091. 72. Margalef, Ramón. 1955. Comunidades dulceacuícolas del NW de España. Publicaciones del Instituto de Biología Aplicada, 21: 5-31. 72. Margalef, Ramón. 1955. Comunidades dulceacuícolas del NW de España. Publicaciones del Instituto de Biología Aplicada, 21: 5-31. 73. Margalef, Ramón 1983:Limnologia. Omega. Barcelona. 73. Margalef, Ramón 1983:Limnologia. Omega. Barcelona. 74. Massana, Ramon, and Carlos Pedrós-Alió. 2008. “Unveiling New Microbial Eukaryotes in the Surface Ocean.” Current Opinion in Microbiology, Ecology and Industrial Microbiology Techniques, 11 (3): 213–18. https://doi.org/10.1016/j.mib.2008.04.004. 74. Massana, Ramon, and Carlos Pedrós-Alió. 2008. “Unveiling New Microbial Eukaryotes in the Surface Ocean.” Current Opinion in Microbiology, Ecology and Industrial Microbiology Techniques, 11 (3): 213–18. https://doi.org/10.1016/j.mib.2008.04.004. 75. Massana, Ramon, Ramon Terrado, Irene Forn, Connie Lovejoy, and Carlos Pedrós‐Alió. 2006. “Distribution and Abundance of Uncultured Heterotrophic Flagellates in the World Oceans.” Environmental Microbiology 8 (9): 1515–22. https://doi.org/10.1111/j.1462-2920.2006.01042.x. 75. Massana, Ramon, Ramon Terrado, Irene Forn, Connie Lovejoy, and Carlos Pedrós‐Alió. 2006. “Distribution and Abundance of Uncultured Heterotrophic Flagellates in the World Oceans.” Environmental Microbiology 8 (9): 1515–22. https://doi.org/10.1111/j.1462-2920.2006.01042.x. 76. McMurdie, Paul J., and Susan Holmes. 2013. “Phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data.” PLOS ONE 8 (4): e61217. https://doi.org/10.1371/journal.pone.0061217. 76. McMurdie, Paul J., and Susan Holmes. 2013. “Phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data.” PLOS ONE 8 (4): e61217. https://doi.org/10.1371/journal.pone.0061217. 77. Monchy, Sébastien, Giovanna Sanciu, Marlène Jobard, Serena Rasconi, Mélanie Gerphagnon, Magali Chabé, Amandine Cian, et al. 2011. “Exploring and Quantifying Fungal Diversity in Freshwater Lake Ecosystems Using RDNA Cloning/Sequencing and SSU Tag Pyrosequencing.” Environmental Microbiology 13 (6): 1433–53. https://doi.org/10.1111/j.1462-2920.2011.02444.x. 77. Monchy, Sébastien, Giovanna Sanciu, Marlène Jobard, Serena Rasconi, Mélanie Gerphagnon, Magali Chabé, Amandine Cian, et al. 2011. “Exploring and Quantifying Fungal Diversity in Freshwater Lake Ecosystems Using RDNA Cloning/Sequencing and SSU Tag Pyrosequencing.” Environmental Microbiology 13 (6): 1433–53. https://doi.org/10.1111/j.1462-2920.2011.02444.x. 78. Moon-van der Staay, Seung Yeo, Vesela A. Tzeneva, Georg W. M. van Der Staay, Willem M. de Vos, Hauke Smidt, and Johannes H. P. Hackstein. 2006. “Eukaryotic Diversity in Historical Soil Samples.” FEMS Microbiology Ecology 57 (3): 420–28. https://doi.org/10.1111/j.1574-6941.2006.00130.x. 78. Moon-van der Staay, Seung Yeo, Vesela A. Tzeneva, Georg W. M. van Der Staay, Willem M. de Vos, Hauke Smidt, and Johannes H. P. Hackstein. 2006. “Eukaryotic Diversity in Historical Soil Samples.” FEMS Microbiology Ecology 57 (3): 420–28. https://doi.org/10.1111/j.1574-6941.2006.00130.x. 79. References Mukherjee, Indranil, Yoshikuni Hodoki, Yusuke Okazaki, Shohei Fujinaga, Kako Ohbayashi, and Shin- ichi Nakano. 2019. “Widespread Dominance of Kinetoplastids and Unexpected Presence of Diplonemids in Deep Freshwater Lakes.” Frontiers in Microbiology 10. https://doi.org/10.3389/fmicb.2019.02375. 80. Negro, A. Isabel, Caridad De Hoyos and Juan Carlos Vega. 2000. Phytoplankton structure and dynamics in Lake Sanabria and Valparaíso reservoir (NW Spain). Hydrobiologia, 424:25-37. DOI: 10.1023/A:1003940625437 80. Negro, A. Isabel, Caridad De Hoyos and Juan Carlos Vega. 2000. Phytoplankton structure and dynamics in Lake Sanabria and Valparaíso reservoir (NW Spain). Hydrobiologia, 424:25-37. DOI: 10.1023/A:1003940625437 81. Negro, A.I., C. De Hoyos, and J.J. Aldasoro. 2003. “Diatom and Desmid Relationships with the Environment in Mountain Lakes and Mires of NW Spain.” Hydrobiologia 505 (1): 1–13. https://doi.org/10.1023/B:HYDR.0000007212.78065.c1. Page 21/30 Page 21/30 82. Nicholls, Kenneth H., and Daniel E. Wujek. 2003. “12 - CHRYSOPHYCEAN ALGAE.” In Freshwater Algae of North America, edited by JOHN D. Wehr and ROBERT G. Sheath, 471–509. Aquatic Ecology. Burlington: Academic Press. https://doi.org/10.1016/B978-012741550-5/50013-1. 83. Norén, Fredrik, Øjvind Moestrup, and Ann-Sofi Rehnstam-Holm. 1999. “Parvilucifera Infectans Norén et Moestrup Gen. et Sp. Nov. (Perkinsozoa Phylum Nov.): A Parasitic Flagellate Capable of Killing Toxic Microalgae.” European Journal of Protistology 35 (3): 233–54. https://doi.org/10.1016/S0932- 4739(99)80001-7. 84. Not, Fabrice, Mikel Latasa, Renate Scharek, Manon Viprey, Pierre Karleskind, Vanessa Balagué, Imelda Ontoria-Oviedo, et al. 2008. “Protistan Assemblages across the Indian Ocean, with a Specific Emphasis on the Picoeukaryotes.” Deep Sea Research Part I: Oceanographic Research Papers 55 (11): 1456–73. https://doi.org/10.1016/j.dsr.2008.06.007. 85. Okamoto, Noriko, and Isao Inouye. 2005. “The Katablepharids Are a Distant Sister Group of the Cryptophyta: A Proposal for Katablepharidophyta Divisio Nova/Kathablepharida Phylum Novum Based on SSU RDNA and Beta-Tubulin Phylogeny.” Protist 156 (2): 163–79. https://doi.org/10.1016/j.protis.2004.12.003. 86. Orsi, William D., Susanne Wilken, Javier del Campo, Thierry Heger, Erick James, Thomas A. Richards, Patrick J. Keeling, Alexandra Z. Worden, and Alyson E. Santoro. 2018. “Identifying Protist Consumers of Photosynthetic Picoeukaryotes in the Surface Ocean Using Stable Isotope Probing.” Environmental Microbiology 20 (2): 815–27. https://doi.org/10.1111/1462-2920.14018. 87. Orsi, William, Young C. Song, Steven Hallam, and Virginia Edgcomb. 2012. “Effect of Oxygen Minimum Zone Formation on Communities of Marine Protists.” The ISME Journal 6 (8): 1586–1601. https://doi.org/10.1038/ismej.2012.7. 88. Pahissa, José, Carmen Fernández-Enríquez, and Caridad De Hoyos. 2015. “Water Quality of Lake Sanabria According to Phytoplankton. A Comparison with Historical Data.” Limnetica, no. 34 (December): 527–40. https://doi.org/10.23818/limn.34.39. 89. Pawlowski, Jan, Stéphane Audic, Sina Adl, David Bass, Lassaâd Belbahri, Cédric Berney, Samuel S. Bowser, et al. References 2012. “CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms.” PLOS Biology 10 (11): e1001419. https://doi.org/10.1371/journal.pbio.1001419. 90. Phillips, Andrew J., Victoria L. Anderson, Emma J. Robertson, Chris J. Secombes, and Pieter van West. 2008. “New Insights into Animal Pathogenic Oomycetes.” Trends in Microbiology 16 (1): 13– 19. https://doi.org/10.1016/j.tim.2007.10.013. 90. Phillips, Andrew J., Victoria L. Anderson, Emma J. Robertson, Chris J. Secombes, and Pieter van West. 2008. “New Insights into Animal Pathogenic Oomycetes.” Trends in Microbiology 16 (1): 13– 19. https://doi.org/10.1016/j.tim.2007.10.013. 91. Planas,Delphine 1991. Factors controlling phytoplankton community structure in an alkaline versus a softwater lake. Oecologia aquatica, 10: 95–111. 91. Planas,Delphine 1991. Factors controlling phytoplankton community structure in an alkaline versus a softwater lake. Oecologia aquatica, 10: 95–111. 92. Pielou, E. C. 1966. “The Measurement of Diversity in Different Types of Biological Collections.” Journal of Theoretical Biology 13 (December): 131–44. https://doi.org/10.1016/0022- 5193(66)90013-0. Page 22/30 93. Piredda, Roberta, Jean-Michel Claverie, Johan Decelle, Colomban de Vargas, Micah Dunthorn, Bente Edvardsen, Wenche Eikrem, et al. 2018. “Diatom Diversity through HTS-Metabarcoding in Coastal European Seas.” Scientific Reports 8 (1): 18059. https://doi.org/10.1038/s41598-018-36345-9. 94. Poikane, Sandra, Rob Portielje, Marcel van den Berg, Geoff Phillips, Sandra Brucet, Laurence Carvalho, Ute Mischke, Ingmar Ott, Hanna Soszka, and Jeroen Van Wichelen. 2014. “Defining Ecologically Relevant Water Quality Targets for Lakes in Europe.” Journal of Applied Ecology 51 (3): 592–602. https://doi.org/10.1111/1365-2664.12228. 94. Poikane, Sandra, Rob Portielje, Marcel van den Berg, Geoff Phillips, Sandra Brucet, Laurence Carvalho, Ute Mischke, Ingmar Ott, Hanna Soszka, and Jeroen Van Wichelen. 2014. “Defining Ecologically Relevant Water Quality Targets for Lakes in Europe.” Journal of Applied Ecology 51 (3): 592–602. https://doi.org/10.1111/1365-2664.12228. 95. Powell, Martha J. 1993. “Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment.” Mycologia 85 (1): 1–20. https://doi.org/10.1080/00275514.1993.12026239. 95. Powell, Martha J. 1993. “Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment.” Mycologia 85 (1): 1–20. https://doi.org/10.1080/00275514.1993.12026239. 96. Rasconi, Serena, Marlène Jobard, and Télesphore Sime-Ngando. 2011. “Parasitic Fungi of Phytoplankton: Ecological Roles and Implications for Microbial Food Webs.” Aquatic Microbial Ecology 62 (2): 123–37. https://doi.org/10.3354/ame01448. 96. Rasconi, Serena, Marlène Jobard, and Télesphore Sime-Ngando. 2011. “Parasitic Fungi of Phytoplankton: Ecological Roles and Implications for Microbial Food Webs.” Aquatic Microbial Ecology 62 (2): 123–37. https://doi.org/10.3354/ame01448. 97. Reche, Isabel, Elvira Pulido-Villena, Rafael Baquero, and Emilio Casamayor. 2005. “Does Ecosystem Size Determine Aquatic Bacterial Richness? Ecology.” Ecology 86 (July): 1715–22. https://doi.org/10.1890/04-1587. References 97. Reche, Isabel, Elvira Pulido-Villena, Rafael Baquero, and Emilio Casamayor. 2005. “Does Ecosystem Size Determine Aquatic Bacterial Richness? Ecology.” Ecology 86 (July): 1715–22. https://doi.org/10.1890/04-1587. 98. Richards, Thomas A, and David Bass. 2005. “Molecular Screening of Free-Living Microbial Eukaryotes: Diversity and Distribution Using a Meta-Analysis.” Current Opinion in Microbiology, Ecology and industrial microbiology/Edited by Sergio Sánchez and Betty Olson · Techniques/Edited by Peter J Peters and Joel Swanson, 8 (3): 240–52. https://doi.org/10.1016/j.mib.2005.04.010. 98. Richards, Thomas A, and David Bass. 2005. “Molecular Screening of Free-Living Microbial Eukaryotes: Diversity and Distribution Using a Meta-Analysis.” Current Opinion in Microbiology, Ecology and industrial microbiology/Edited by Sergio Sánchez and Betty Olson · Techniques/Edited by Peter J Peters and Joel Swanson, 8 (3): 240–52. https://doi.org/10.1016/j.mib.2005.04.010. 99. Richards, Thomas A., Alexey A. Vepritskiy, Dilnora E. Gouliamova, and Sandra A. Nierzwicki-Bauer. 2005. “The Molecular Diversity of Freshwater Picoeukaryotes from an Oligotrophic Lake Reveals Diverse, Distinctive and Globally Dispersed Lineages.” Environmental Microbiology 7 (9): 1413–25. https://doi.org/10.1111/j.1462-2920.2005.00828.x. 99. Richards, Thomas A., Alexey A. Vepritskiy, Dilnora E. Gouliamova, and Sandra A. Nierzwicki-Bauer. 2005. “The Molecular Diversity of Freshwater Picoeukaryotes from an Oligotrophic Lake Reveals Diverse, Distinctive and Globally Dispersed Lineages.” Environmental Microbiology 7 (9): 1413–25. https://doi.org/10.1111/j.1462-2920.2005.00828.x. 100. Richter, Daniel, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, Gabriel Reygondeau, Nicolas Maillet, et al. 2020. “Genomic Evidence for Global Ocean Plankton Biogeography Shaped by Large-Scale Current Systems.” https://hal.inria.fr/hal-02399723. 100. Richter, Daniel, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, Gabriel Reygondeau, Nicolas Maillet, et al. 2020. “Genomic Evidence for Global Ocean Plankton Biogeography Shaped by Large-Scale Current Systems.” https://hal.inria.fr/hal-02399723. 101. Rico, Maria, Blas Valero-Garcés, Juan Carlos Vega, Ana Moreno, Penélope González- Sampériz, Maria Morellón & PilarMata. 2007. El registro sedimentario del Lago de Sanabria desde la última glaciación. Resúmenes XII Reunión Nacional de Cuaternario. Junio 21-23, 2007. Ávila., Spain 102. Ruppert, Krista M., Richard J. Kline, and Md Saydur Rahman. 2019. “Past, Present, and Future Perspectives of Environmental DNA (EDNA) Metabarcoding: A Systematic Review in Methods, Monitoring, and Applications of Global EDNA.” Global Ecology and Conservation 17 (January): e00547. https://doi.org/10.1016/j.gecco.2019.e00547. 102. Ruppert, Krista M., Richard J. Kline, and Md Saydur Rahman. 2019. “Past, Present, and Future Perspectives of Environmental DNA (EDNA) Metabarcoding: A Systematic Review in Methods, Monitoring, and Applications of Global EDNA.” Global Ecology and Conservation 17 (January): e00547. https://doi.org/10.1016/j.gecco.2019.e00547. 103. Shearer, Carol A., Enrique Descals, Brigitte Kohlmeyer, Jan Kohlmeyer, Ludmila Marvanová, David Padgett, David Porter, et al. 2007. References “Fungal Biodiversity in Aquatic Habitats.” Biodiversity and Conservation 16 (1): 49–67. https://doi.org/10.1007/s10531-006-9120-z. 103. Shearer, Carol A., Enrique Descals, Brigitte Kohlmeyer, Jan Kohlmeyer, Ludmila Marvanová, David Padgett, David Porter, et al. 2007. “Fungal Biodiversity in Aquatic Habitats.” Biodiversity and Conservation 16 (1): 49–67. https://doi.org/10.1007/s10531-006-9120-z. Page 23/30 104. Shen, Congcong, Wenju Liang, Yu Shi, Xiangui Lin, Huayong Zhang, Xian Wu, Gary Xie, Patrick Chain, Paul Grogan, and Haiyan Chu. 2014. “Contrasting Elevational Diversity Patterns between Eukaryotic Soil Microbes and Plants.” Ecology 95 (11): 3190–3202. https://doi.org/10.1890/14-0310.1. 105. Sime-Ngando, Télesphore, Emilie Lefevre, and Frank Gleason. 2011. “Hidden Diversity among Aquatic Heterotrophic Flagellates: Ecological Potentials of Zoosporic Fungi.” Hydrobiologia 659 (January). https://doi.org/10.1007/s10750-010-0230-y. 106. Simon, Marianne, Ludwig Jardillier, Philippe Deschamps, David Moreira, Gwendal Restoux, Paola Bertolino, and Purificación López-García. 2015. “Complex Communities of Small Protists and Unexpected Occurrence of Typical Marine Lineages in Shallow Freshwater Systems.” Environmental Microbiology 17 (10): 3610–27. https://doi.org/10.1111/1462-2920.12591. 107. Singer, David, Christophe V. W. Seppey, Guillaume Lentendu, Micah Dunthorn, David Bass, Lassâad Belbahri, Quentin Blandenier, et al. 2021. “Protist Taxonomic and Functional Diversity in Soil, Freshwater and Marine Ecosystems.” Environment International 146 (January): 106262. https://doi.org/10.1016/j.envint.2020.106262. 108. Šlapeta, Jan, David Moreira, and Purificación López-García. 2005. “The Extent of Protist Diversity: Insights from Molecular Ecology of Freshwater Eukaryotes.” Proceedings of the Royal Society B: Biological Sciences 272 (1576): 2073–81. https://doi.org/10.1098/rspb.2005.3195. 109. Stamatakis, Alexandros. 2014. “RAxML Version 8: A Tool for Phylogenetic Analysis and Post- Analysis of Large Phylogenies.” Bioinformatics 30 (9): 1312–13. https://doi.org/10.1093/bioinformatics/btu033. 110. Stoeck, Thorsten, David Bass, Markus Nebel, Richard Christen, Meredith D. M. Jones, Hans-Werner Breiner, and Thomas A. Richards. 2010. “Multiple Marker Parallel Tag Environmental DNA Sequencing Reveals a Highly Complex Eukaryotic Community in Marine Anoxic Water.” Molecular Ecology 19 Suppl 1 (March): 21–31. https://doi.org/10.1111/j.1365-294X.2009.04480.x. 111. Stoeck, Thorsten, Hans-Werner Breiner, Sabine Filker, Veronika Ostermaier, Barbara Kammerlander, and Bettina Sonntag. 2014. “A Morphogenetic Survey on Ciliate Plankton from a Mountain Lake Pinpoints the Necessity of Lineage-Specific Barcode Markers in Microbial Ecology.” Environmental Microbiology 16 (2): 430–44. https://doi.org/10.1111/1462-2920.12194. 112. Stoecker, Diane K., Matthew D. Johnson, Colomban de Vargas, and Fabrice Not. 2009. “Acquired Phototrophy in Aquatic Protists.” Aquatic Microbial Ecology 57 (3): 279–310. https://doi.org/10.3354/ame01340. 113. Stoof-Leichsenring, Kathleen R., Katharina Dulias, Boris K. Biskaborn, Luidmila A. Pestryakova, and Ulrike Herzschuh. 2020. “Lake-Depth Related Pattern of Genetic and Morphological Diatom Diversity in Boreal Lake Bolshoe Toko, Eastern Siberia.” PLOS ONE 15 (4): e0230284. https://doi.org/10.1371/journal.pone.0230284. 114. Strom, Suzanne L., Ronald Benner, Susan Ziegler, and Michael J. References Dagg. 1997. “Planktonic Grazers Are a Potentially Important Source of Marine Dissolved Organic Carbon.” Limnology and Oceanography 42 (6): 1364–74. https://doi.org/10.4319/lo.1997.42.6.1364. Page 24/30 Page 24/30 115. Taboada, Javier. 1913. El lago de San Martín deCastañeda. Bol. Soc. Esp. Hist. Nat.,13:860-883. 115. Taboada, Javier. 1913. El lago de San Martín deCastañeda. Bol. Soc. Esp. Hist. Nat.,13:860-883. 116. Takishita, Kiyotaka, Naoji Yubuki, Natsuki Kakizoe, Yuji Inagaki, and Tadashi Maruyama. 2007. “Diversity of Microbial Eukaryotes in Sediment at a Deep-Sea Methane Cold Seep: Surveys of Ribosomal DNA Libraries from Raw Sediment Samples and Two Enrichment Cultures.” Extremophiles: Life Under Extreme Conditions 11 (4): 563–76. https://doi.org/10.1007/s00792-007- 0068-z. 117. Torruella, Guifré, David Moreira, and Purificación López-García. 2017. “Phylogenetic and Ecological Diversity of Apusomonads, a Lineage of Deep-Branching Eukaryotes.” Environmental Microbiology Reports 9 (2): 113–19. https://doi.org/10.1111/1758-2229.12507. 118. Vargas, Colomban de, Stéphane Audic, Nicolas Henry, Johan Decelle, Frédéric Mahé, Ramiro Logares, Enrique Lara, et al. 2015. “Eukaryotic Plankton Diversity in the Sunlit Ocean.” Science 348 (6237). https://doi.org/10.1126/science.1261605. 119. Vega, José Carlos, Caridad De Hoyos and Juan Aldasoro,1992. The Sanabria lake. The largest natural freshwater lake in Spain. Limnetica,8: 49-57 120. Vega, José Carlos, Caridad De Hoyos, Juan Aldasoro, and J. Miguel. 2005. “Nuevos Datos Morfométricos Para El Lago de Sanabria.” Limnetica, ISSN 0213-8409, Vol. 24, No. 1-2, 2005 (Ejemplar Dedicado a: XI Congreso de La Asociación Española de Limnología y III Congreso Ibérico de Limnología), Pags. 115-121 24 (January). 121. Villalba, Antonio, Kimberly S. Reece, M. Camino Ordás, Sandra M. Casas, and Antonio Figueras Huerta. 2004. “Perkinsosis in Molluscs: A Review.” https://doi.org/10.1051/alr:2004050. 122. Villarino, Ernesto, James R. Watson, Bror Jönsson, Josep M. Gasol, Guillem Salazar, Silvia G. Acinas, Marta Estrada, et al. 2018. “Large-Scale Ocean Connectivity and Planktonic Body Size.” Nature Communications 9 (1): 142. https://doi.org/10.1038/s41467-017-02535-8. 123. Wang, Qiong, George M. Garrity, James M. Tiedje, and James R. Cole. 2007. “Naïve Bayesian Classifier for Rapid Assignment of RRNA Sequences into the New Bacterial Taxonomy.” Applied and Environmental Microbiology 73 (16): 5261–67. https://doi.org/10.1128/AEM.00062-07. 124. Weiss, Sophie, Zhenjiang Zech Xu, Shyamal Peddada, Amnon Amir, Kyle Bittinger, Antonio Gonzalez, Catherine Lozupone, et al. 2017. “Normalization and Microbial Differential Abundance Strategies Depend upon Data Characteristics.” Microbiome 5 (March). https://doi.org/10.1186/s40168-017- 0237-y. 125. West, Pieter van. 2006. “Saprolegnia Parasitica, an Oomycete Pathogen with a Fishy Appetite: New Challenges for an Old Problem.” Mycologist 20 (3): 99–104. https://doi.org/10.1016/j.mycol.2006.06.004. 126. Wickham, Hadley. 2009. Ggplot2: Elegant Graphics for Data Analysis. Use R! New York: Springer- Verlag. References https://doi.org/10.1007/978-0-387-98141-3. 127. Williams, Penny, Mericia Whitfield, Jeremy Biggs, Simon Bray, Gill Fox, Pascale Nicolet, and David Sear. 2004. “Comparative Biodiversity of Rivers, Streams, Ditches and Ponds in an Agricultural Page 25/30 Page 25/30 Landscape in Southern England.” Biological Conservation 115 (2): 329–41. https://doi.org/10.1016/S0006-3207(03)00153-8. Landscape in Southern England.” Biological Conservation 115 (2): 329–41. https://doi.org/10.1016/S0006-3207(03)00153-8. 128. Worden, Alexandra Z., Marie L. Cuvelier, and Douglas H. Bartlett. 2006. “In-Depth Analyses of Marine Microbial Community Genomics.” Trends in Microbiology 14 (8): 331–36. https://doi.org/10.1016/j.tim.2006.06.008. 129. Xie, Yuwei, Jizhong Wang, Jianghua Yang, John P. Giesy, Hongxia Yu, and Xiaowei Zhang. 2017. “Environmental DNA Metabarcoding Reveals Primary Chemical Contaminants in Freshwater Sediments from Different Land-Use Types.” Chemosphere 172 (April): 201–9. https://doi.org/10.1016/j.chemosphere.2016.12.117. 130. Yi, Zhenzhen, Cedric Berney, Hanna Hartikainen, Shazia Mahamdallie, Michelle Gardner, Jens Boenigk, Thomas Cavalier-Smith, and David Bass. 2017. “High-Throughput Sequencing of Microbial Eukaryotes in Lake Baikal Reveals Ecologically Differentiated Communities and Novel Evolutionary Radiations.” FEMS Microbiology Ecology 93 (8). https://doi.org/10.1093/femsec/fix073. 130. Yi, Zhenzhen, Cedric Berney, Hanna Hartikainen, Shazia Mahamdallie, Michelle Gardner, Jens Boenigk, Thomas Cavalier-Smith, and David Bass. 2017. “High-Throughput Sequencing of Microbial Eukaryotes in Lake Baikal Reveals Ecologically Differentiated Communities and Novel Evolutionary Radiations.” FEMS Microbiology Ecology 93 (8). https://doi.org/10.1093/femsec/fix073. Figures gure 1 Figure 1 Page 26/30 Page 26/30 Sampling information. The grey map on the top right of the box shows the position of Sanabria Lake in the Iberian Peninsula. The map on the left shows the sampling sites pointed by orange triangles. Nearby villages are delimited by red coloured areas. Camping sites are pointed by yellow stars. The sampling protocol is detailed in the upper right part of the figure. Filters of 2000μm and 200μm contained mainly multicellular organisms and they were not sequenced. Sample S6 is water and S7 is sediment from an upstream tributary stream. Samples S8-S10 are water samples from a nearby small pond (Laguna de los Peces) that is not connected to the main water body. In the table, we present CTD data collected in Sanabria Lake (sites S1-S5). Figure 2 Alpha diversity of protists across the sampling sites. Each dot represents a sample and the colour code indicates the habitat of origin. Significant differences between pairs are indicated by double asterisks (p- value ≤0.01 ** ). Figure 2 Figure 2 Alpha diversity of protists across the sampling sites. Each dot represents a sample and the colour code indicates the habitat of origin. Significant differences between pairs are indicated by double asterisks (p- value ≤0.01 ** ). Alpha diversity of protists across the sampling sites. Each dot represents a sample and the colour code indicates the habitat of origin. Significant differences between pairs are indicated by double asterisks (p- value ≤0.01 ** ). Page 27/30 Figure 3 Reduced-space NMDS plot showing microbial eukaryotes community structure based Figure 3 Reduced space NMDS plot showing microbial eukaryote Page 28/30 Figure 3 Reduced-space NMDS plot showing microbial eukaryotes community structure based on Bray–Curtis dissimilarity. A) Dissimilarity calculated from the rarefied at even depth (31361 reads) abundances of protist ASVs in all samples (dataset D3). The plot is divided in four quadrants horizontally and four quadrants vertically, delimited by grey lines. (Stress = 0.2083063, Procrustes: rmse 0.03612112 max resid 0.1863833), B) Dissimilarity calculated from the abundances of rarefied at even depth (31361 reads) Figure 3 Reduced-space NMDS plot showing microbial eukaryotes community structure based on Bray–Curtis dissimilarity. A) Dissimilarity calculated from the rarefied at even depth (31361 reads) abundances of protist ASVs in all samples (dataset D3). The plot is divided in four quadrants horizontally and four quadrants vertically, delimited by grey lines. (Stress = 0.2083063, Procrustes: rmse 0.03612112 max resid 0.1863833), B) Dissimilarity calculated from the abundances of rarefied at even depth (31361 reads) Reduced-space NMDS plot showing microbial eukaryotes community structure based on Bray–Curtis dissimilarity. A) Dissimilarity calculated from the rarefied at even depth (31361 reads) abundances of protist ASVs in all samples (dataset D3). The plot is divided in four quadrants horizontally and four quadrants vertically, delimited by grey lines. (Stress = 0.2083063, Procrustes: rmse 0.03612112 max resid 0.1863833), B) Dissimilarity calculated from the abundances of rarefied at even depth (31361 reads) Page 28/30 Page 28/30 ASVs present only in Sanabria samples (dataset D5). The plot is divided in three quadrants horizontally and five quadrants vertically, delimited by grey lines. (Stress = 0.1676406, Procrustes: rmse 2.784844e-06 max resid 1.93149e-05) max resid 1.93149e-05)  Figure 4 Distribution and relative abundance of the eukaryotic divisions across sampling sites as defined by ASVs. “Others” group together all taxa with relative abundance less than 1%. The boxes represent the interquartile range (IQR) between the first and third quartiles and the vertical line inside the box defines the median. Figure 5 Phylogenetic placement of 113 ASVs into 1233 branches of a reference tree with 618 taxa that span all extant eukaryotic diversity as described in Adl et al. 2019. The ASVs have bootstrap confidence score value <97 at the supergroup level in the RDP classifier (see Methods) and total abundance greater than 1000 reads. The diameter of the circles indicates the number of ASVs placed in the branch. One ASV can be placed on multiple branches until it reaches accumulated likelihood_weight_ratio 1. Phylogenetic placement of 113 ASVs into 1233 branches of a reference tree with 618 taxa that span all extant eukaryotic diversity as described in Adl et al. 2019. The ASVs have bootstrap confidence score value <97 at the supergroup level in the RDP classifier (see Methods) and total abundance greater than 1000 reads. The diameter of the circles indicates the number of ASVs placed in the branch. One ASV can be placed on multiple branches until it reaches accumulated likelihood_weight_ratio 1. Figure 4 Distribution and relative abundance of the eukaryotic divisions across sampling sites as defined by ASVs. “Others” group together all taxa with relative abundance less than 1%. The boxes represent the interquartile range (IQR) between the first and third quartiles and the vertical line inside the box defines the median. Page 29/30 Figure 5 Phylogenetic placement of 113 ASVs into 1233 branches of a reference tree with 618 taxa that span all extant eukaryotic diversity as described in Adl et al. 2019. The ASVs have bootstrap confidence score value <97 at the supergroup level in the RDP classifier (see Methods) and total abundance greater than 1000 reads. The diameter of the circles indicates the number of ASVs placed in the branch. One ASV can be placed on multiple branches until it reaches accumulated likelihood_weight_ratio 1. Supplementary Files This is a list of supplementary files associated with this preprint. Click to download. SanabriametabarcodingSupplementaryMaterial.pdf Page 30/30
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EXPERIÊNCIA DE CONSUMO EM REALIDADES VIRTUAIS: UM ESTUDO DE CASO REALIZADO NO SECOND LIFE
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Organização: Comitê Científico Interinstitucional Editor Científico: Milton de Abreu Campanario Avaliação: Double Blind Review pelo SEER/OJS Editor Científico: Milton de Abreu Campanario Avaliação: Double Blind Review pelo SEER/OJS Revisão: Gramatical, normativa e de Formatação ç p / Revisão: Gramatical, normativa e de Formatação Lílian Caporlíngua Giesta Lílian Caporlíngua Giesta Doutora em Administração pela Universidade Federal do Rio Grande do Sul – UFRGS Professor da Universidade Federal Rural do Semiárido – UFERSA ligiesta@gmail.com (Brasil) RAI – Revista de Administração e Inovação ISSN: 1809-2039 DOI: RAI – Revista de Administração e Inovação ISSN: 1809-2039 DOI: RAI – Revista de Administração e Inovação ISSN: 1809-2039 DOI: Isadora Camila Marques Soares Graduada em Administração pela Universidade Federal Rural do Semiárido – UFERSA isadoracamila@hotmail.com (Brasil) RESUMO Este estudo tem como objetivo geral investigar como ocorre a experiência de consumo no Second Life. Para isso, utilizou-se um estudo de caso qualitativo. A coleta de dados foi desenvolvida por meio da observação participante, de diálogos inspirados na etnografia e entrevistas semiestruturadas. A análise de conteúdo orientou a obtenção dos resultados. Identificou-se que os sentimentos relacionados ao processo de compra são semelhantes com o que é sentido pelos respondentes ao realizarem compras na vida real e, em algumas situações, são até mais prazerosos. Palavras-chave: Second life; Marketing; Experiência de consume; Comportamento do Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life 1. INTRODUÇÃO A internet se tornou parte da vida cotidiana dos indivíduos. Muitos deles fazem uso dessa ferramenta tanto para se comunicar com outras pessoas ao redor do mundo quanto para pesquisar, comparar e comprar inúmeros artigos ofertados. Esse instrumento trouxe diversas inovações às formas de comunicação (FONSECA et al., 2008). Por volta do ano de 2004, surgiram as primeiras redes sociais, que logo ganharam destaque na internet, pois elas possibilitaram aos seus usuários a divulgação de informações pessoais e a possibilidade de fazer amigos. Em tais redes também existem fóruns de discussão sobre os mais variados assuntos, nesse local é possível conhecer pessoas novas e compartilhar opiniões com várias outras sem restrição de distância, uma vez que existem usuários ao redor de todo o mundo (SOLOMON, 2008). Por meio da evolução dessas redes sociais e com o surgimento dos jogos de interpretação de personagens online em massa para múltiplos jogadores, ou Massive Multiplayer Online Role Playing Game (MMORPG), as empresas perceberam os novos canais de contatos com os consumidores em potencial, além de um novo meio de testar os produtos em fase de lançamento e economizar tempo e dinheiro que seriam investidos na fabricação e promoção desses produtos (THILMANY, 2008). Um desses jogos de MMORPG bastante peculiar é o Second Life, criado pela empresa Linden Research Inc., que ao contrário da maioria dos jogos, não possui sistema de pontos, ganhador ou perdedor, ou fases que levam ao próximo nível. Como sugere o nome, neste jogo o usuário (ou residente) tem de fato uma segunda vida. O residente pode experimentar a compra e atividades de consumo neste mundo virtual, da mesma maneira que o faz no mundo real (SHELTON, 2010) e uma das coisas intrigantes é que a maioria dos produtos ofertados é criada pelos próprios residentes, fazendo com que eles possam gerar renda por meio do programa (TERDIMAN, 2008). Por se tratar de uma realidade peculiar e “imaginária”, esse consumo experiencial vem sendo valorizado pelos seus usuários. Para Schmitt (2000), as experiências são capazes de ligar a empresa e a marca ao estilo de vida do consumidor, criando estímulos para os sentidos e para a mente na medida em que o cliente vivencia os diversos tipos de situações os quais é submetido, de modo que as atitudes em relação ao produto e ao comportamento do consumidor na hora da compra atinjam um contexto social bem mais amplo. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 1. INTRODUÇÃO Compreender a experiência de consumo neste ambiente parece ser de alta relevância, uma vez que vários autores (BONSU; DARMONY, 2008; HAENLEIN; KAPLAN, 2009; PARMENTIER; Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 99 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta ROLLAND, 2009; SHELTON, 2010; TERDIMAN, 2008; THILMANY, 2008; WANDT, 2007; WOOD; SOLOMON, 2009;) destacam o crescimento tanto da quantidade de usuários, que segundo Wood e Solomon (2009) ultrapassam o número de 16 milhões, quanto do montante de recursos financeiros gasto pelos jogadores em realidades virtuais desse tipo, fazendo com que este mercado atingisse entre o segundo semestre de 2008 e o mesmo período de 2009 a marca de mais de meio bilhão de dólares em transações (LINDEN LAB, 2010). Diante disso, apresenta-se o objetivo geral do estudo: investigar como ocorre a experiência de consumo no Second Life. Para tanto, os seguintes objetivos específicos viabilizaram a investigação, quais sejam: Descrever os fatores que mais levam os usuários a empregarem recursos financeiros neste tipo de ambiente virtual; Verificar quais elementos do ambiente virtual são mais valorizados pelos jogadores entrevistados; Descobrir quais são as respostas internas dos residentes ao vivenciar uma experiência de consumo no jogo; Identificar os motivos que fazem com que os usuários permaneçam no jogo. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 2. COMPORTAMENTO DO CONSUMIDOR EM REALIDADES VIRTUAIS Em um mundo que possui mais de 13 milhões de avatares e multinacionais do porte da Adidas, Toyota e Vodafone, como o Second Life, os usuários são expostos a uma variedade infinita de relações sociais. Podem participar de comunidades que eles próprios criam por meio de seus avatares, o ambiente pelo qual circulam, além de colaborar em ações de lazer e/ou atividades econômicas, formando então uma comunidade de novos consumidores (PARMENTIER; ROLLAND 2009). O Second Life é ambientado no que se chama de metaverso explicado por Kamel (2009, p. 21) como algo que: [...] não é limitado pelo tempo e que continua a funcionar mesmo quando os jogadores não estão conectados. Navegando por horas e horas, residentes ou jogadores criam mundos paralelos para o seu mundo real. [...] Um metaverso é caracterizado por um universo e personagens que agem individualmente ou em grupos e que experimentam o universo de acordo com práticas estabelecidas pelos próprios jogadores ou residentes. Castronova (2001) afirma que um mundo virtual é um programa de computador com três características definidoras: (i) interatividade, existe no computador e pode ser acessada remota e simultaneamente por um grande número de pessoas; (ii) fisicalidade, onde pessoas acessam o programa através de uma interface que simula um ambiente em primeira pessoa na tela do computador; e (iii) persistência, o programa continua funcinando haja pessoas usando ou não. 100 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life Tikkanen et al. (2009) destacam que as transformações culturais e tecnológicas avançaram a emergência acelerada de novas formas de comunidade e identidade, desde as mais convencionais plataformas de rede até tipos completamente novos de realidades, como os jogos de MMORPG que se utilizam da imersão e interatividade para prender a atenção dos usuários. As vantagens que este tipo de jogo traz para as empresas são apresentadas por Thilmany (2008) quando diz que lançando protótipos de seus novos produtos em um mundo virtual, a organização consegue como retorno uma grande economia e uma forma mais precisa de feedback dos clientes. Economia esta representada pelo baixo custo de lançamento dos protótipos online em comparação a fabricação, teste e lançamento no mundo real. Vergani e Andrade (2008, p. 2492) partilham dessa mesma ideia quando descrevem que os usuários “[...] podem ser vistos como consumidores e participantes do processo de pesquisa para desenvolvimento e implementação de novos produtos”. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 2. COMPORTAMENTO DO CONSUMIDOR EM REALIDADES VIRTUAIS No ambiente do Second Life existe ainda a possibilidade da relação de co-criação entre cliente e empresa apresentada por Bonsu e Darmondy (2008) como uma liberdade do consumidor em diversos sentidos, mas que também representa uma armadilha para que o consumidor produza para a empresa. Em sua pesquisa Dahl e Mureau apresentam sete diferentes motivações para consumidores participarem de tarefas criativas. Vale ressaltar que há diferentes perfis de jogadores. Parmentier e Rolland (2009) destacam na sua pesquisa quatro tipos de identidade de usuários, são eles: (i) duplicação, quando o usuário tem um avatar muito próximo ao seu porte físico no mundo real e a sua personalidade real se reflete no avatar; (ii) melhoramento, o indivíduo diz que o avatar é a sua extensão, porém apenas transmite parte de si mesmo, sendo geralmente os aspectos positivos; (iii) transformação, em que o usuário rejeita no seu avatar qualquer característica que ele rejeite em si mesmo, fazendo algumas vezes de seu avatar, um oposto do que ele é na realidade; (iv) metamorfose, o indivíduo considera o avatar um ser alternativo de si mesmo, e os comportamentos e ações do avatar são totalmente imaginários. Seguindo a linha das motivações para participar de jogos como o Second Life, Shelton (2010) cita nove delas: (i) fantasia, quando se usa o SL para fazer coisas que não se consegue fazer no mundo real; (ii) customização, para aqueles que têm interesse em modificar a aparência de um avatar; (iii) interpretação, quando se cria um residente com uma história e se interage com outras pessoas gerando assim improvisação; (iv) relacionamentos, onde a pessoa entra no SL para fazer amizades ou manter relações de longa data com outros residentes; (v) socialização, quando se usa o SL para interagir com amigos, família e conversar com outros residentes; (vi) escapismo, quando se usa o SL como uma ferramenta de escape dos problemas do mundo real; (vii) relaxamento, quando o SL é usado como Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./m 101 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta meio de aliviar o estresse; (viii) avanço/desafio, usando o SL para aumentar o nível de habilidades e de realizações pessoais; e (ix) competição, que é o desejo de competir e desafiar outros residentes. 2. COMPORTAMENTO DO CONSUMIDOR EM REALIDADES VIRTUAIS Hinsch e Bloch (2009, p. 49) concordam com a ideia de Shelton (2010) de que a fácil construção de relacionamentos e o escapismo são fortes motivos tanto para se fazer um primeiro login, quanto para permanecer no jogo e ainda acrescentam duas novas motivações. Poder e controle são um tipo de motivação, o fato de que o residente vive a vida que escolhe viver, criando um avatar da forma que ele imaginar e ainda possuindo uma “vida” que ele possui a liberdade de comprar produtos por ele desejados. Segurança é o outro tipo, uma vez que encontros em um mundo virtual não possuem os mesmos riscos que na vida real, pois um avatar não pode ser machucado fisicamente. Ou ainda caso o avatar seja rejeitado por outros residentes do SL, ou encontre-se em alguma situação que não o agrade ele sempre pode teleportar-se para qualquer outra locação do mundo virtual e começar tudo de novo. No mundo real, assim como no SL, frequentemente um produto ou serviço é comprado por aquilo que representa para o consumidor ou para as pessoas com quem ele está relacionado, servindo como referência social, dando assim significado ao termo interacionismo simbólico (LEIGH; GABEL, 1992). O comportamento de compra de cada indivíduo é avaliado pelos outros membros do grupo e ainda segundo os mesmos autores podem ser divididos em três características: (i) consumidores em transição, aqueles que passam a consumir certos tipos de produtos por eles serem referência na nova situação; (ii) consumidores que ocupam alto nível de importância em um grupo social, os quais consomem de acordo com o que julgam que irá impressionar os outros membros do grupo; e (iii) consumidores que aspiram ganhar lugar em um grupo social específico, consomem aquilo que acreditam ser pré-requisito para a aceitação no grupo desejado. Para Taurion (2009, p. 52) os residentes que surgem como líderes permanecem por meritocracia e influenciam de forma colaborativa, porém às vezes, permanecem apenas pelo cumprimento de alguma missão, ao final da qual surge uma nova liderança, encorajando assim colaborações e experimentações. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 2.1 Experiência de consumo em ambientes virtuais Como resposta ao desenvolvimento simultâneo nos campos da tecnologia de informação, supremacia da marca e comunicação e entretenimento no amplo ambiente de mercado houve uma mudança do tradicional marketing de “características e benefícios” para o marketing que visa criar experiências para os consumidores (SCHMITT, 1999, p. 53). Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 102 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life Todas as formas de contato feitas por um consumidor a determinado produto são experiências que serão aplicadas a ele, e através da soma deste histórico é produzido o valor percebido pelo cliente. Para Flôr e Umeda (2009, p. 3), o marketing experiencial busca “oferecer produtos e campanhas que consigam estimular os sentidos e as emoções do público-alvo [...]” procurando instalar-se na memória do consumidor disseminando o sentimento que fez parte da experiência atribuída a marca. Kamel (2009) apresenta quatro proposições de análise dos avatares para um melhor entendimento da experiência de consumo no metaverso. Afirma-se que as contribuições desta análise são significativas, porém, não dispõe de explicações sobre como os consumidores escolhem os seus avatares e a maneira como os jogadores ou residentes os envolve neste mundo. A primeira proposição sugere que no metaverso, o avatar é uma forma de expressão do auto-conceito que o consumidor escolhe em concordância com o seu ideal, real, e/ou eu social. A segunda sugestão é que o avatar é uma reflexão do papel que o consumidor escolhe para atuar no mundo virtual. A terceira suposição diz que o avatar escolhido pelo consumidor é uma reflexão das suas próprias motivações. Por último, a quarta proposição sugere que o avatar escolhido pelo consumidor seria uma reflexão dos traços da sua própria personalidade. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 2.1 Experiência de consumo em ambientes virtuais Quanto ao marketing experiencial, apóia-se em quatro características, que são: (i) foco na experiência do consumidor, que fornece valores sensoriais, emocionais, cognitivos, comportamentais e relacionais ao invés de valores funcionais; (ii) foco no consumo como uma experiência holística, em que o conceito de uma característica é ampliado e o significado dessa situação de consumo específico é examinado no seu mais vasto contexto sócio-cultural; (iii) consumidores são animais racionais e emocionais, que diz que os consumidores são tão emocionais quanto racionais e podem ser guiados a uma compra por puro hedonismo; e (iv) métodos e ferramentas são ecléticos, pois o marketing experiencial não está vinculado a apenas uma ideologia metodológica, mas seus métodos e ferramentas são diversos e multifacetados (SCHMITT, 1999). Algumas características apresentadas por Schmitt (1999) encontram base em Holbrook e Hirschman (1982) que falam do fato da perspectiva experiencial suportar uma investigação mais energética de relações psicofísicas multissensoriais no comportamento do consumidor, sugerindo assim novos e diferentes métodos de interpretação, bem como do fato de que o consumo envolve um fluxo constante de fantasias, sentimentos e diversão com vários significados simbólicos, respostas hedônicas e critérios estéticos, atribuindo uma perspectiva fenomenológica e referindo-se a ele como um estado essencialmente subjetivo de consciência, ou seja, não somente feito conscientemente, mas também guiado por emoções de forma hedônica. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./m 103 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Hirschman e Holbrook (1982, p. 94) explicam que o consumo hedônico tem relação com “[...] aquelas facetas do comportamento do consumidor que se relacionam com os aspectos multissensoriais, fantasiosos e emotivos da experiência com os produtos”, cujos “[...] atos são baseados não no que os consumidores conhecem como real, mas naquilo que eles desejam que seja realidade”. Kamel (2009) vai além, ao fazer a conexão desse tipo de consumo experiencial com o ambiente do SL quando mostra que o metaverso oferece uma experiência hedonista ao permitir que seus residentes vivam essa sensação, uma vez que ela se encaixa nos aspectos lúdicos do consumo contemporâneo. E acrescenta que sabendo disso os editores do jogo estão despendendo esforços significantes para reforçar a convivência dos residentes e expandir as oportunidades de customização do universo virtual. Na concepção de Okada (2005, p. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 2.1 Experiência de consumo em ambientes virtuais 43) “as pessoas estarão mais propensas a consumir bens hedônicos quando o contexto da decisão as permite ter flexibilidade para justificar este consumo”, e a diferença entre esse tipo de compra e o consumo utilitário é apenas uma questão de grau de percepção. Em seu estudo ela apresenta que uma alternativa hedônica tende a ser mais utilizada quando comparada com uma alternativa utilitária quando elas surgem isoladamente. Enquanto que a compra utilitária tende a ser escolhida com mais frequência quando as duas são apresentadas juntas. Isto ocorre porque em contrapartida a facilidade com que se justificam os gastos em bens utilitários, o consumo de bens hedônicos está sempre associado a um senso de culpa e à dificuldade de quantificar seus benefícios. Schmitt (1999) apresenta em seu trabalho cinco Módulos Experienciais Estratégicos (MEE), que interagem entre si, dos quais as empresas podem fazer uso para criar diferentes tipos de experiência para os seus consumidores. O módulo percepção apela para os sentidos com o objetivo de criar experiências sensoriais através da visão, audição, tato, paladar e olfato. O sentir, segundo módulo apresentado, apela para os sentimentos internos com o objetivo de criar experiências afetivas que variam de estados medianamente positivos para fortes emoções de prazer e orgulho. O módulo de pensar apela ao intelecto com o propósito de criar experiências de solução de problemas que envolvem os consumidores de forma criativa. O quarto módulo é chamado de agir e enriquece a vida dos consumidores orientando suas experiências, mostrando diferentes alternativas de fazer coisas, de estilos de vida e de interações. O último modo, relacionar, contém aspectos dos outros módulos, porém vai além do indivíduo e o relaciona com algo fora do seu próprio eu, como outras pessoas e culturas. De acordo com o tipo de MEE utilizado deve-se definir o provedor de experiência mais adequado, o qual subdivide-se em sete tipos: (i) comunicação - equivale à propaganda; (ii) identidade 104 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Li visual e verbal - nome, logotipo etc.; (iii) presença do produto - design do produto, embalagem e display de demonstração; (iv) co-branding - eventos de marketing, patrocínio, relacionamentos, licenciamentos e merchandising em filmes e campanhas cooperativas; (v) ambiente - local; (vi) web sites e mídia eletrônica; (vii) pessoas - equipe de vendas, assistência técnica, e demais pessoas vinculadas à empresa. 2.1 Experiência de consumo em ambientes virtuais A estratégia de marketing que trabalha com os sentidos procura captar a atenção dos consumidores por meio de estímulos que gerem prazer estético ou excitação. As experiências sensoriais podem diferenciar empresas e produtos, além de motivar os consumidores e agregar valor. De acordo com o estudo de Eroglu, Machleit e Davis (2001, p. 179) a atmosfera proporcionada por ambientes de lojas tradicionais, não pode ser aplicada, em sua totalidade, a ambientes de lojas virtuais, pois estas são impossibilitadas de apresentar algumas características de lojas tradicionais como a percepção do olfato, porém, apresentam peculiaridades como flexibilidade no tempo e espaço. As várias combinações do ambiente de loja real se resumem em sua maioria a apelos visuais através de um monitor. Para Costa e Larán (2003), uma compra por impulso ocorre derivada de três fatores principais: (i) a circulação do consumidor na loja, como a atividade com fins recreativos ou informativos de percorrer e examinar o ambiente sem intenção imediata de compra; (ii) a impulsividade do indivíduo, que resulta da luta entre a vontade de comprar e o autocontrole, sendo que o desejo prevalece.; e (iii) a influência dos elementos ambientais, como a presença de cores, sons, promoções, entre outros, aumentando a permanência dos consumidores nas lojas, despertando ou gerando impulsos que levam ao ato da compra. Portanto, observa-se que há algumas diferenças entre o comportamento de compra em atmosferas tradicionais e virtuais. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 3. PROCEDIMENTOS METODOLÓGICOS A expressão pesquisa qualitativa assume diferentes significados no campo das ciências sociais (NEVES, 1996) e engloba técnicas interpretativas favoráveis ao delineamento e entendimento dos sentidos dos fenômenos do mundo social. Grande parte dos estudos qualitativos se realiza na fonte de origem dos dados, e os pesquisadores ao empregarem o método em questão voltam sua atenção para o processo social mais do que para a estrutura social, buscando visualizar o contexto e quando possível, integra-se com o objeto de estudo para que possa obter a compreensão do fenômeno. e Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 105 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Como o tema sugerido por este estudo é pouco explorado, posto a falta de estudos nesta área, optou-se pelo uso da perspectiva qualitativa. Logo esta investigação conta com características de pesquisa exploratória a fim de “[...] levantar informações sobre um determinado objeto, delimitando assim um campo de trabalho” (SEVERINO, 2007, p. 123). Ainda pode-se encontrar neste trabalho características de um estudo de caso, uma vez que, está restrito ao ambiente de jogo do SL. Yin (2001) aponta que o estudo de caso é uma forma de se fazer pesquisa social empírica ao se investigar um fenômeno atual dentro de um contexto de vida real, em que as fronteiras entre o fenômeno e o contexto não são claramente definidas e na situação em que múltiplas fontes de evidência são utilizadas. O SL demonstra características que o diferem dos outros jogos de MMORPG e o torna um atrativo a pesquisas nesta área, pois garante a propriedade das criações aos residentes, e a possibilidade de fazer o que quiserem, o que serve também como motivação para o usuário. Esta é a saída encontrada pelos seus criadores para garantir uma economia crescente e saudável, em que os jogadores possuem os mesmos direitos de propriedade semelhante aos da vida real (TERDIMAN, 2008, p. 7). Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 3. PROCEDIMENTOS METODOLÓGICOS Outra característica própria do jogo é que aos residentes é também permitida a compra de itens, criando assim uma experiência de consumo para os usuários que optarem não por fazer, mas por gastar dinheiro adquirindo artefatos que outros avatares fizeram e puseram a venda, mostrando aquilo que os consumidores estão necessitando e por vezes não encontram no mundo real. A seleção de respondentes ocorreu de forma aleatória e simples. Todavia, essa seleção foi cuidadosa, no sentido de priorizar a qualidade das informações. Quanto aos respondentes, nesta pesquisa, foi composto por residentes do Second Life que tinham de alguma forma despendido dinheiro com o jogo, como também, pelos que participavam do jogo sem efetuar compra. No total foram dois grupos de sujeitos que trouxeram informações relevantes ao estudo: os avatares que não consomem e aqueles que consomem. Como método de coleta de dados, utilizou-se o método de observação participante para tentar compreender os fenômenos que estão sendo estudados a partir da perspectiva dos participantes como sugere Godoy (1995). Esse tipo de observação requer a participação real do pesquisador na vida da comunidade estudada, podendo o observador assumir o papel de membro do grupo e chegar ao conhecimento do mesmo a partir do seu interior. Além da observação participante, diálogos e entrevistas semiestruturadas foram realizadas. Com base nos preceitos do diálogo etnográfico, houve interação com os consumidores de produtos vendidos nesse ambiente e com os não-compradores. Esta etapa da pesquisa foi realizada durante nove meses (fase exploratória). Enquanto que a entrevista Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 106 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Li semiestruturada foi aplicada logo em seguida durante o mês subsequente, com o intuito de consolidar o alcance dos objetivos propostos no estudo com apenas consumidores. O primeiro contato com um residente se deu no início da experiência no jogo, que ocorreu na fase exploratória, conhecendo os diferentes ambientes foi possível se relacionar com avatares hospitaleiros dispostos a ajudar e tirar dúvidas. Passado um mês de conversas esporádicas, surgiu um avatar que viria a ser o que com mais frequência ofereceu ajuda. Por meio dele tomou-se conhecimento de várias funcionalidades e peculiaridades do SL, além do fato de conhecer vários jogadores que compunham o seu círculo de amizade. 3. PROCEDIMENTOS METODOLÓGICOS A análise dos dados foi realizada levando-se em consideração todas as informações colhidas com o apoio do embasamento teórico. A análise de conteúdo foi o modo com que os dados foram analisados com o propósito de alcançar o objetivo da pesquisa. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4. DISCUSSÃO DOS RESULTADOS A presente pesquisa tem como objetivo geral descrever os fatores que mais levam os usuários a empregarem recursos financeiros neste tipo de ambiente virtual. Para tanto, inicialmente, são apresentadas algumas informações da dinâmica do Second Life. Como característica marcante, o presente trabalho possui um único objeto de estudo que é o jogo Second Life. Para ter acesso ao SL basta que se crie gratuitamente uma conta no seu site oficial e se faça o download de qualquer programa que possa conectá-lo a este “mundo”. O viewer é encontrado em qualquer site de busca, além do viewer oficial disponibilizado pela Linden Lab existem vários outros que possuem diferentes funcionalidades. Quando o login é feito, o contato inicial com outros usuários é simples, como frisam Hinsch e Bloch (2009, p. 49) “[...] não existe necessidade de viagens ou de marcar encontros. [...] Um residente pode simplesmente mover-se em direção a outro jogador e dizer ou escrever ‘Oi’”. O SL é um lugar onde existem possibilidades ilimitadas e inúmeras opções do que fazer, um lugar onde praticamente tudo é admissível. Apesar da possibilidade de realização de qualquer fantasia e da tolerância dos residentes para com o jeito de ser dos outros usuários do jogo, em alguns locais é proibido voar, deixar cair objetos no chão, entre outras proibições que ficam a critério de quem é dono do lugar. 4. DISCUSSÃO DOS RESULTADOS Além disso, a própria Linden Lab conta com seis grandes regras do jogo que se desobedecidas podem gerar a expulsão do avatar deste ambiente virtual, são elas: (i) intolerância, que são quaisquer 107 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta tipos de ações que marginalizem, menosprezem ou difamem indivíduos ou grupos, o que acaba minando a troca de ideias e diminuindo a comunidade; (ii) assédio, que é caracterizado pela conduta ou comunicação de forma grosseira, intimidante ou ameaçadora, que constitua um avanço sexual ou a solicitação de favores sexuais ou comportamentos que de outra forma causem mal-estar ou tensão; (iii) agressões, que no jogo são atirar, empurrar ou atropelar outro residente em uma área segura, criar ou usar objetos que única ou persistentemente sejam dirigidos a outro residente e o impedem de se divertir no Second Life; (iv) privacidade, que garante aos residentes o direito a um certo nível de privacidade em relação ao usufruto do SL; (v) regiões, grupos e listas de conteúdo adulto, que são restritas apenas a áreas destinadas a este tipo de informação; e (vi) perturbação da paz, como a intromissão de eventos agendados, a transmissão insistente de publicidade indesejada, o uso de sons repetitivos, seguir ou armazenar itens ou outros objetos que intencionalmente diminuam o desempenho do servidor ou restrinjam a capacidade de outro residente de aproveitar o ambiente do jogo. O SL possui um relógio próprio ajustado ao Greenwich Mean Time (GMT) -7:00, este é o mesmo fuso horário do estado da Califórnia nos Estados Unidos, onde está localizada a sede da Linden Lab e os residentes em sua maioria marcam os compromissos do jogo de acordo com esse relógio, não de acordo com o seu próprio fuso. No Second Life é possível se fazer compras de terras e em alguns destes ambientes do jogo pode-se perceber a existência de uma hierarquia presente entre os participantes de determinados grupos, o que os tornam responsáveis pelos espaços pertencentes ao grupo. Alguns avatares chegam a receber denominações como ‘Rainha’ e ‘Rei’, para designar sua importância para os demais e muitos destes grupos possuem conselhos formados por alguns participantes escolhidos pelos monarcas donos das terras. 4. DISCUSSÃO DOS RESULTADOS Essa escolha deve-se em sua maioria a ajuda fornecida pelos outros avatares às necessidades do grupo, bem como a frequência com que estão presentes no jogo. Existem três grandes tipos de avatares, são eles: (i) humanos, que são avatares com características de seres humanos; (ii) ferais, aqueles que são bichos; e (iii) furries, avatares que são a mistura entre os ferais e os humanos. Após a explanação sobre o jogo, são apresentados os resultados da pesquisa. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.1 Motivos de compra A Figura 1 revela os fatores que mais levam os usuários a empregarem recursos financeiros neste tipo de ambiente virtual. Verificou-se que a disponibilidade de recursos financeiros, a busca pela e Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 108 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Li melhoraria da aparência dos seus avatares, o preço e a expressão da individualidade são principais motivos de compra dos residentes entrevistados. MOTIVOS DE COMPRA Disponibilidade de recursos financeiros Melhoria da aparência do avatar Preço Expressão da individualidade Respondente H: i honestly cant remember the first thing i bought. lol but i probably bought it because i figured the money isnt going anywhere, i might as well use it. Respondente F: I buy fancy dresses and such; Respondente J: to make my av look better; Respondente E: i wanted to look good on here; Respondente B: my look. Respondente I: … it's cheaper in here to own a horse then it is in real life; Respondente G: One of my friends says that they see buying things for avatars as ‘cheap entertainment’ an I agree... Respondente C: i just love shopping hun and i want to dress different from the rest; Respondente G: … We buy these items to express ourselves, and be individual. Figura 1. Principais motivos de compra apresentados Fonte: Elaboração das autoras. Figura 1. Principais motivos de compra apresentados Fonte: Elaboração das autoras. Figura 1. Principais motivos de compra apresentados Fonte: Elaboração das autoras. Verificou-se que o motivo de compra mais citado pelos residentes entrevistados foi o de melhorar a aparência dos seus avatares. Foi constatado também que alguns avatares desejam expressar sua individualidade por meio da compra de produtos no SL, como afirmou a Respondente G dizendo que faz esse tipo de compra para expressar a si própria e ser individual. Os Respondentes A e H indicam a disponibilidade de dinheiro nas contas do jogo como um dos motivos de compra quando afirmaram que se não gastassem o dinheiro, ele sozinho não vai a lugar nenhum. Outro fator que leva os residentes a empregarem dinheiro no jogo é o preço dos produtos no SL, que é bem menor do que o preço dos seus equivalentes na vida real. Tal argumento foi defendido por Hinsch e Bloch (2009, p. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.1 Motivos de compra 56) justificando este fator ao dizer que isso se dá pela taxa de câmbio dos Lindens Dólares. Trata-se da moeda do jogo. A aquisição mínima de Lindens permitida pelo jogo é de L$ 550 por compra, o que equivale a aproximadamente US$ 2,50 que “permite pessoas que não são ricas comprar itens para os seus avatares com os quais eles não podem nem sonhar na vida real”. A compra de um vestido de noiva na vida real que varia, em média, entre R$ 1.000 e R$ 2.000, pode ser feita no jogo por L$ 400, ou seja, menos de R$ 3,20. Em consonância com o que afirmam Hirschman e Holbrook (1982) sobre a compra hedônica de itens fantasiosos para suprirem necessidades daquilo que desejam que seja real, oito dos entrevistados afirmaram adotar esta prática no jogo. Animais de estimação, principalmente cavalos, são frequentemente comprados, tendo sido citados pelo Respondente I: “horses lmao!”, este fato está ligado, além do hedonismo, com o motivo de que comprar cavalos no Second Life é mais barato que na 109 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta vida real. Outra entrevistada que afirmou fazer esse tipo de compra foi a Respondente C quando disse: “yes [...] i dont have horses”, neste momento da conversa ela havia sido perguntada sobre a compra de itens que não possuía na vida real, mas sim no SL. No SL o mercado de cavalos é bastante amplo, havendo criadores, leilões e raças tal qual na vida real. Ainda se tratando de compras hedônicas, podem ser mencionados outros relatos em relação à demonstração de sua vontade para efetivar a primeira compra no jogo. Avatares fantasiosos como vampiros (avatares que podem morder outros residentes conseguindo assim um pedaço das suas “almas”, para torná-los filhos e filhas) e dragões são comprados para substituir a personalidade que os residentes desejam, mas sabem ser inexistente na vida real. 4.1 Motivos de compra As informações da Respondente C: “Vampire Hud [...] it is just a fantasy of mine since i was a kid”, e da Respondente I: “my vampire hud [...] because the reason i came to sl was to be a vampire” reforçam que a ideia de poder se transformar em certos tipos de criaturas é um atrativo a mais para a realização de compras no jogo. É interessante explicar o significado de HUD (Heads’up Display) que é um mostrador que monitora as ações de certas características dos avatares. O relato da Respondente G: “First thing I ever bought from here was a 1L$ dragon avatar. I really like dragons as well, and I was so excited when a dragon avatar came up in my search” indica que a possibilidade de transformar-se em diferentes animais também inspira os jogadores a continuar comprando. Parmentier e Rolland (2009) apresentaram em seu trabalho que as empresas de grande porte do mundo real levaram suas lojas ao mundo virtual, porém, do grupo de residentes entrevistados apenas o Respondente A afirmou conhecer a existência delas quando disse: “eles tem suas lojas aqui também [...] há um mercado aqui [...] grande [...] marcas só de SL e marcas de RL também [...] eu tenho uma coleção de calçados adidas [...] toyota tem modelos de autos para SL também”. Portanto, o estudo contribui para o preenchimento de espaço na lacuna de informações existentes sobre este tipo de variável, acrescentando informações aos estudos de Parmentier e Rolland (2009) por confirmar sua teoria de melhoramento e metamorfose como perspectivas sobre as identidades dos avatares, e à pesquisa de Shelton (2010) quando demonstra que fantasia e metamorfose também são motivos de compra. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.2 Elementos mais valorizados Analisando-se as respostas obtidas por meio das entrevistas, quatro são os elementos mais valorizados pelos jogadores. O mais citado nas entrevistas é a tolerância existente no jogo. Com isso, Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 110 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Li os avatares podem sentir-se à vontade para fazerem e usarem o que quiserem sem se preocupar, pois suas ações não afetam a relação com outros avatares. Os relatos, que podem ser encontrados na Figura 2, confirmam o que foi explicado por Hinsch e Bloch (2009, p. 46) quando afirmam que “os usuários do Second Life têm uma considerável liberdade de fazer o design e criar o seu próprio avatar”. O que se aproxima do que é defendido por Kamel (2009, p. 30), para o autor “o pensamento de consumo pós-moderno considera que a experiência de consumo não está destinada a reconciliar diferenças e paradoxos, mas permitir que eles existam livremente”. Tal entendimento também é compartilhado por Hinsch e Bloch (2009, p. 46), eles explicam que “enquanto a maioria das leis físicas existe no mundo virtual, o Second Life toma algumas liberdades, os residentes são capazes de voar e ainda de teletransportarem-se de um lugar a outro”. As relações afetivas de amizade que são criadas dentro do jogo são em alguns casos fortes, fazendo com que alguns residentes considerem outros membros de sua família no jogo. Para alguns usuários, este tipo de relação é a característica do SL que tem mais valor. Esta evidência pode ser encontrada nas explicações dos Respondentes A, B e H evidenciando o que foi apresentado por Castronova (2001) que afirma que depois do fechamento de um mundo virtual, os usuários sentem a perda tanto do mundo quando das relações que foram uma parte significante das suas vidas. Em acréscimo, ressalta-se para os investidores que pretendem entrar no ramo de lojas em ambientes virtuais, tais como o SL, a preferência dos usuários do jogo por determinadas lojas se dá principalmente pela identificação com o estilo de produtos oferecidos. Pode-se perceber, portanto, que os usuários do Second Life valorizam, principalmente, as relações de amizade e a família construída no jogo, as possibilidades ilimitadas oferecidas pelo ambiente do SL, a tolerância dos outros usuários para com os seus estilos e/ou atitudes, e ainda os cenários do jogo. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.2 Elementos mais valorizados ELEMENTOS MAIS VALORIZADOS Amigos e/ou família Cenários Possibilidades ilimitadas Tolerância Respondente A: eu gosto das amizades, e claro, de minha familia virtual [...] minha esposa, e filhos e seus filhos; Respondente B: the boys and meeting ppl. Respondente E: some places, the scenery looks good; Respondente H: well some of the scenic places [...] its like art. Respondente I: […] i can create my own fantasy world in here and get away from real life sometimes; Respondente D: the boundless options. Respondente F: How most people are rather accepting; Respondente J: the possibility of doin anythng i want without being judged; Figura 2. Elementos do ambiente virtual mais valorizados pelos usuários Fonte: Elaboração das autoras Respondente F: How most people are rather accepting; Respondente J: the possibility of doin anythng i want without being judged; Figura 2. Elementos do ambiente virtual mais valorizados pelos usuários Fonte: Elaboração das autoras Figura 2. Elementos do ambiente virtual mais valorizados pelos usuários Fonte: Elaboração das autoras 111 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Após a discussão dos resultados relacionados aos elementos mais valorizados, apresentam-se as respostas internas dos jogadores entrevistados. Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Após a discussão dos resultados relacionados aos elementos mais valorizados, apresentam-se as respostas internas dos jogadores entrevistados. 4.3 Respostas internas 112 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life periência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life regrets sometimes; happy; Respondente B: i feel wonderful. Respostas internas relativas à presença no ambiente do jogo Aceitação Felicidade Relaxamento Tédio Respondente F: Accepted […]. Respondente G: “I feel very accepted here, like I can dress how I want, and do things without being judged. […]. Respondente H: “iv gone through so many emotions on here just like in rl. but my most dominant feeling would be the happiness to be reconnected with the ones i love; Respondente J: i feel at ease.i get all my stress out here.i jst feel relaxed. Respondente F: […] if a bit bored at times; Respondente I: i feel most times boredom. Figura 3. Respostas internas dos residentes Fonte: Elaboração das autoras Respostas internas relativas à presença no ambiente do jogo Figura 3. Respostas internas dos residentes Fonte: Elaboração das autoras Fazer compras no jogo é similar a sensação da vida real. Sobre esse assunto, o Respondente A explica que: “sempre é quase como comprar na RL”. Quando a Respondente H afirma que: “well i still make sure that what i buy its what i really want. like in rl how you look around until you can find the best. well i do that here too. i hate wasting money […]” é apresentada uma semelhança com o ato da pesquisa de compra, onde o consumidor visita várias lojas para identificar aquela que oferece os melhores produtos e/ou melhores condições. A Respondente I informa que: “i shop when i'm bored on here and i shop when i feel like crap in real life. so it's the same”, simbolizando o consumo como forma de relaxamento. Ainda com relação às respostas internas, mas, dessa vez, voltadas à presença no ambiente do jogo, pode-se perceber através das respostas que assim como na compra existem três sentimentos positivos e apenas um negativo. As afirmações positivas dizem respeito à felicidade, o sentimento de aceitação por parte dos outros residentes e ainda o relaxamento proporcionado pelo jogo. O único aspecto negativo foi apresentado pelas Respondentes F e I, e diz respeito ao tédio que alguns residentes afirmam sentir em certos momentos. 4.3 Respostas internas Salienta-se que o esqueleto do marketing experiencial é constituído por duas características: os modelos experienciais estratégicos (MEEs), que são o sentido, o sentimento, pensamento, ação e identificação, e os provedores de experiências, os ProExs, que são o espaço ambiental, as pessoas, a presença do produto, as co-marcas, as comunicações, a mídia eletrônica e a identidade visual e verbal (SCHMITT, 2002). Esta seção tem como escopo os MEEs que constituem as respostas internas dos indivíduos. Especificamente, as respostas internas investigadas são relativas à compra realizada no ambiente do jogo, a maioria das respostas obtida foi positiva com a informação dos residentes de que a compra os deixavam felizes, animados e algumas vezes deslumbrados, porém alguns residentes apresentaram o arrependimento como uma resposta negativa do ato da compra. Além disso, alguns residentes informaram que a sensação de compra no Second Life era em alguns aspectos parecida com as sensações sentidas na vida real. Portanto, são expostos relatos dos residentes para que seja possível discuti-los com o apoio do referencial teórico. Tais respostas estão inseridas no segundo módulo experiencial estratégico (MEE) proposto por Schmitt (1999) que está relacionado ao sentimento dos clientes estimulado pelo marketing experiencial, dados os vários aspectos que podem ser observados nas respostas apresentadas na Figura 3 como, a felicidade presente nas respostas dos Respondentes F, H e outros, a animação citada pelos Respondentes C, G e I, bem como o deslumbramento do Respondente B. Além do arrependimento em algumas compras descrito pelos Respondentes C, F e I. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. RESPOSTAS INTERNAS Respostas internas relativas às compras feitas no jogo Animação Arrependimento Felicidade Deslumbramento Respondente C: i feel excited; Respondente I: excited! lol!; Respondente F: Like I really shouldn't, but I know that it's the only way I'll get things that I like; Respondente C: Respondente F: I figure out what I want, and I guess I'm happy when I buy it; Respondente E: i bought my body parts, that made me Respondente H: i was usually amazed by it. like i had never seen it before. it was so different; Respondente B: i fell shocked or amazed. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.3 Respostas internas Com relação a confundir emoções do SL com emoções da vida real, seis dos respondentes afirmaram já ter feito algum tipo de confusão pelo menos uma vez, sendo que para os Respondentes E, F e I este foi um tipo de experiência experimentada apenas uma vez, com a qual aprenderam a não fazer mais esse tipo de confusão. Já para as Respondentes B, D e H, não têm como fazer esta distinção, posto que apesar de serem dois mundos o avatar e quem está por trás dele no fim são a mesma pessoa. Emoções também estão ligadas à criação, no Second Life, daquilo que os usuários sentem falta na vida real, já que das respostas obtidas duas estão ligadas à criação de laços fortes com outros residentes. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./m 113 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian lí Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Eroglu, Machleit e Davis (2001) explicam que as lojas virtuais não exploram em sua totalidade os sentidos que são captados pelos ambientes de loja reais, fato evidenciado neste estudo. Apenas três sentidos foram citados pelos respondentes quando perguntados sobre quais deles eram estimulados pelo ambiente de imersão do SL. Dos três a visão foi citada com mais frequência, seguida da audição e do tato. Portanto, constata-se que as respostas internas dos residentes são deslumbramento e arrependimento correspondendo às respostas cognitivas, animação e felicidade como respostas afetivas. Tais reações corroboram o pensamento de Peter e Olson (2009) quando afirmam que o sistema cognitivo e o sistema afetivo podem trabalhar em conjunto para a tomada de decisões, e neste caso para a experiência de consumo no SL. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.4 Permanência no jogo Quanto aos motivos que fazem com que os usuários permaneçam no jogo, obteve-se o seguinte resultado: a influência dos relacionamentos de amizade e a interação com a família do SL na permanência dos usuários no jogo, o escapismo, com relação à vida real, e o sentimento de responsabilidade de alguns usuários para com alguns aspectos do jogo são os principais influenciadores. Também foram identificados: o motivo que fez os residentes conectarem-se ao jogo pela primeira vez, as suas primeiras impressões, a experiência mais especial que vivenciaram no jogo e os motivos que os fazem sair do ambiente de jogo e voltarem à vida real. A afirmativa de Hinsch e Bloch (2009, p. 49) que “a experiência no Second Life é tão diferente dos jogos tradicionais que rapidamente se torna claro que a interação social é o que motiva as pessoas a habitar este mundo” é confirmada pelas respostas apresentadas pelos Respondentes D, E, F, G e J, que afirmam ser principalmente para saber notícias das amizades e da família que criaram no jogo que continuam se logando, pois assim podem passar um tempo com eles. “Os jogadores escapam da realidade e dos seus problemas através da imersão no mundo virtual e pesquisadores estão divididos quanto a essas implicações” (KAMEL, 2009. p. 28). A afirmação desta autora é confirmada nos achados desta pesquisa ao identificar que alguns usuários têm suas contas no Second Life como uma forma de escapar dos problemas e não pensar nos estresses causados pela realidade. Esses resultados também estão de acordo com que é postulado por Hinsch e Bloch (2009, p. 50) quando dizem que “espera-se que os usuários do Second Life estejam mascarados como algo frequentemente diferente da sua pessoa no mundo real. Deste modo, o potencial de fuga é bem maior no Second Life que em outros sites de relacionamentos”. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 114 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life As respostas dadas pelos Respondentes A e H demonstram a responsabilidade para com alguns aspectos do jogo como motivadora da permanência dos usuários, o que vem a legitimar a afirmação de que “[...] alguns jogadores consideram ter um papel de responsabilidade no jogo que os ajudam a serem mais auto-confiantes na vida real” (KAMEL, 2009. p. 28). 4.4 Permanência no jogo Os motivos que levaram os jogadores a experimentarem pela primeira vez foram a curiosidade de saber como era o ambiente do jogo após terem recebido informações sobre ele em diversos locais. Neste primeiro contato com a vida no jogo, a maioria dos respondentes não teve uma boa primeira impressão, alegando que acharam o jogo confuso, complexo irritante e chato. O Respondente A explica que: “como algo muito complexo [...] grande [...] difícil […] e como se vc fora chegada ao outro mundo [...] tudo diferente [...] coisas q vc não entende”, quando se entra pela primeira vez no jogo você é levado a ilha de orientação pública, onde existem inúmeros avatares e você pode perceber a dimensão do jogo pois a ilha possui vários ambientes a serem explorados. Respondente C: “it was boring”, neste caso pela falta de metas apresentadas pelo jogo. Respondente D: “it confused me”, pois o avatar entrou em um ambiente com chat por voz e não conseguia entender o que estavam falando ou o que ela foi fazer ali. Por outro lado, alguns residentes tiveram respostas positivas no primeiro contato com o jogo, acreditando que seria um ótimo lugar para conhecer novas pessoas e fazer amigos, como acreditam a Respondente J: “the first impression i had about sl for me was that it would be a site for me to make friends and play it how i would hav liked my life to be like” e o Respondente E: “yes,i thought it was great.good to meet people”. Não houve nenhuma resposta que pudesse corroborar o exposto por Hinsch e Bloch (2009, p. 49) de que “um novo jogador exposto ao Second Life pela primeira vez pode achar que o mais interessante de toda a experiência é que não se precisa fazer nada”. Por isso, esta pesquisa aponta um resultado diferente daquilo que foi exposto em pesquisa anterior. Procurou-se saber ainda qual teria sido a experiência mais marcante de toda a vida do usuário no SL. A maioria dessas experiências envolvia outro avatar como as vividas pelos Respondentes A, E e J, que tiveram relações sérias com outros residentes, a Respondente H que teve a oportunidade de ter filhos no jogo, e as Respondentes B e F que alegaram ter feito sexo. Apenas três das respostas estavam ligadas a outros tipos de experiência. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.4 Permanência no jogo Motivos de permanência no jogo Fonte: Elaboração das autoras Figura 4. Motivos de permanência no jogo Fonte: Elaboração das autoras Apresentados os resultados obtidos, passa-se, então, a apresentar as considerações finais 4.4 Permanência no jogo Friends that i'd have never met if I hadn't joined; Respondente J: see how my sl friends are doin; Respondente E: i have some good friends on here i like to see; Respondente C: to escape from reality and not think about stress in RL; Respondente J: to get outa stress […]; Respondente I: cause i'm bored most days lol!. Respondente A: eu tenho uma vida aki; Respondente H: well being second to the queen of the clan, i have tons of responsibilities that cant be put aside. i also have my horses to tend to. they keep me going when and if nothing else does. Figura 4. Motivos de permanência no jogo Fonte: Elaboração das autoras Apresentados os resultados obtidos, passa-se, então, a apresentar as considerações finais. PERMANÊNCIA NO JOGO Amigos/Família Escapismo Responsabilidades no jogo Respondente F: I have friends here. Friends that i'd have never met if I hadn't joined; Respondente J: see how my sl friends are doin; Respondente E: i have some good friends on here i like to see; Respondente C: to escape from reality and not think about stress in RL; Respondente J: to get outa stress […]; Respondente I: cause i'm bored most days lol!. Respondente A: eu tenho uma vida aki; Respondente H: well being second to the queen of the clan, i have tons of responsibilities that cant be put aside. i also have my horses to tend to. they keep me going when and if nothing else does. Figura 4. Motivos de permanência no jogo Fonte: Elaboração das autoras Apresentados os resultados obtidos, passa-se, então, a apresentar as considerações finais. PERMANÊNCIA NO JOGO Escapismo Responsabilidades no jogo Respondente A: eu tenho uma vida aki; Respondente H: well being second to the queen of the clan, i have tons of responsibilities that cant be put aside. i also have my horses to tend to. they keep me going when and if nothing else does. Amigos/Família Respondente F: I have friends here. Friends that i'd have never met if I hadn't joined; Respondente J: see how my sl friends are doin; Respondente E: i have some good friends on here i like to see; Respondente C: to escape from reality and not think about stress in RL; Respondente J: to get outa stress […]; Respondente I: cause i'm bored most days lol!. Figura 4. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 4.4 Permanência no jogo Que tem a transformação em vampiro como principal experiência segundo a Respondente I: “my most outstanding experience was becoming a vampire […]”, a exploração de diversos lugares como exposto por Respondente D: “i love sims with exploring stuff”, e a experiência de ter visitado as estrelas como afirma Respondente G: “Ahh The best experience I had about SL was with a friend of mine, she and her partner own a Science organisation. And she took me into space, on a rocket, it was fantastic. I enjoyed it very much :)”. 115 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Quanto ao que faz com que os usuários saiam deste mundo de imersão que é o Second Life, algumas das motivações apontam para o próprio jogo, como quando fica chato ou não existe nenhum amigo online. Portanto, na Figura 4 observam-se os motivos que fazem com que os usuários permaneçam no jogo. Em primeiro lugar são os amigos e a família que os residentes criaram dentro do ambiente do SL, depois, o sentimento de responsabilidade que eles nutrem para com alguns aspectos do jogo, além do escapismo dos problemas que os sujeitos possuem na vida real. PERMANÊNCIA NO JOGO Amigos/Família Escapismo Responsabilidades no jogo Respondente F: I have friends here. Friends that i'd have never met if I hadn't joined; Respondente J: see how my sl friends are doin; Respondente E: i have some good friends on here i like to see; Respondente C: to escape from reality and not think about stress in RL; Respondente J: to get outa stress […]; Respondente I: cause i'm bored most days lol!. Respondente A: eu tenho uma vida aki; Respondente H: well being second to the queen of the clan, i have tons of responsibilities that cant be put aside. i also have my horses to tend to. they keep me going when and if nothing else does. Figura 4. Motivos de permanência no jogo Fonte: Elaboração das autoras Apresentados os resultados obtidos, passa-se, então, a apresentar as considerações finais. PERMANÊNCIA NO JOGO Amigos/Família Escapismo Responsabilidades no jogo Respondente F: I have friends here. Amigos/Família Respondente F: I have friends here. Friends that i'd have never met if I hadn't joined; Respondente J: see how my sl friends are doin; Respondente E: i have some good friends on here i like to see; 5. CONSIDERAÇÕES FINAIS O presente estudo foi motivado pela expectativa de que se no ambiente do Second Life existe a possibilidade de fazer compras de diversos itens, então, havia experiência de consumo que deveria ser investigada. O jogo possui características peculiares de jogabilidade permitidas pelas ilimitadas possibilidades oferecidas e pelo fato de que nenhum avatar é controlado por computador, eles são de fato pessoas de diversos locais do mundo. Os resultados obtidos demonstraram que o ambiente do jogo proporciona aos seus residentes experiências significativas, não só experiências relacionadas ao consumo de produtos dentro do jogo, mas também, identificou-se a influência das relações afetivas criadas e mantidas no ambiente. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./m 116 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Life Em se tratando de lojas ambientadas no Second Life, a preferência dos sujeitos por algumas específicas se dá por três características principais: a primeira e mais recorrente é se o tipo de produto oferecido está relacionado ao estilo que os jogadores desejam transparecer com seus avatares. Outra característica interessante é o preço menor de produtos oferecidos por algumas lojas. Por fim, o market place que é uma espécie de “mercado livre” criado pelo próprio Liden Lab onde os usuários podem vender suas posses, que segundo dois respondentes fazem com que a pesquisa de produtos se torne mais fácil. Por meio da interpretação dos dados coletados, pôde-se identificar que os sentimentos relacionados ao processo de compra dentro do ambiente analisado são em algum nível parecido com o que é sentido pelos respondentes ao realizarem compras na vida real e em algumas situações até mais prazerosos. As respostas foram divididas quando o assunto tratado foi a proximidade entre as emoções vividas no jogo e na vida real. Parte dos entrevistados faz confusão entre o ambiente real e o virtual. Para eles há uma mistura de emoções e o que sentiam pelos amigos e/ou família do jogo permaneciam lá quando não estavam logados no jogo. Ainda a respeito dessas emoções quando perguntados se já haviam criado algo no jogo que lhes faziam falta na vida real duas das respostas obtidas eram relacionadas a laços fortes com outros avatares e a infância perfeita na concepção de um respondente. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 5. CONSIDERAÇÕES FINAIS Demonstrando um forte estímulo aos sentimentos dos jogadores, os entrevistados elencaram como emoções mais frequentes despertadas pela presença no ambiente do jogo a felicidade, a aceitação e o relaxamento, mas, existiram entrevistados que sentiram tédio enquanto estavam jogando. Embora o Second Life seja um ambiente de imersão, o computador se torna um fator limitante do estímulo dos sentidos no jogo uma vez que os jogadores não têm a possibilidade de sentir o aroma do ambiente em que estão localizados, nem o sabor dos alimentos que os seus avatares ingerem. De acordo com a pesquisa, o sentido mais utilizado é a visão, citada como principal fonte de interação entre a pessoa por trás do avatar e o jogo. Em segundo lugar, aparece a audição por ser estimulada pelo som do ambiente, por sons emitidos pelo avatar e ainda pela possibilidade de conversação através da fala oferecida pelo jogo. Por último, o tato foi lembrado por alguns sujeitos como sendo um sentido que era estimulado pelas experiências de jogabilidade. Os motivos que levaram os sujeitos a experimentarem o jogo foram principalmente a curiosidade, por terem ouvido falar sobre este ambiente em algum lugar e sentirem vontade de conhecer o que o Second Life oferecia, além de algumas indicações de amigos que já faziam parte do jogo. As primeiras impressões que os sujeitos tiveram, entretanto, foram em sua maioria negativas como: jogo confuso, complexo, irritante e chato. Apenas foram identificadas duas respostas positivas e Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 117 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta de residentes que acharam que o jogo seria um ótimo lugar para se fazer novos amigos e ainda possuir a vida que se desejavam. Com relação à hora em que vão deixar o jogo e voltarem para as suas vidas reais, alguns dos respondentes identificaram que em dado momento o jogo fica chato, quer seja pela falta de amigos on- line, quer seja pela falta do que fazer, sendo esta a hora de sair do jogo. Ademais foram citados como motivos de saída do jogo suprir necessidades físicas e ou fisiológicas e resolver problemas na vida real. Por fim, indica-se a realização de estudos em ambientes de jogos virtuais que considerem o interacionismo simbólico. 5. CONSIDERAÇÕES FINAIS Além disso, sugere-se investigar a visão e o papel dos empreendedores que disponibilizam produtos no SL. REFERÊNCIAS BONSU, Samuel K.; DARMONDY, Aron. Co-creating Second Life: market-consumer cooperation in contemporary economy. Journal of macromarketing, v. 28, n. 4. Toronto: Sage Publications, 2008. p. 355-368. CASTRONOVA, Edward. Virtual Worlds: a first-hand account of market and society on the cyberian frontier. CESifo Working Paper Series. n. 618. 2001. 41p. EROGLU, Sevgin A. MACHLEIT, Karen A. DAVIS, Lenita M. Atmosferic qualities of online retailing: a conceptual model and implications. Journal of Business Research, n. 54. New York: Elsevier, 2001. p. 177-184. FLÔR, Priscilla P.; UMEDA, Guilherme M. Branding sensorial: a integração do marketing de experiências às estratégias de comunicação. In: Congresso Brasileiro de Ciências da Comunicação, 32, 2009, Curitiba. Anais... Curitiba: Sociedade Brasileira de Estudos Interdisciplinares da Comunicação, 2009. p. 1-14. FONSECA, Marcelo Jacques et al. Tendências sobre as comunidades virtuais da perspectiva dos prosumers. RAE eletrônica. São Paulo, v. 7, n. 2, art. 24, jul/dez. 2008. GODOY, Arilda Shmidt. Introdução a pesquisa qualitativa e suas possibilidades. Revista Administração de Empresas. São Paulo, v. 35, n. 2. mar/abr. 1995, p. 57-63. HAENLEIN, Michael; KAPLAN, Andreas M. Flagship brand stores within virtual worlds: the impact of virtual store exposure on real-life attitude toward the brand and purchase intent. Recherche et applications en marketing. v. 24, n. 3. [S.l.], 2009. p. 58-79. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 118 Experiência de Consumo em Realidades Virtuais: um Estudo de Caso Realizado no Second Li HINSCH, Christian; BLOCH, Peter H. Interaction Seeking in Second Life and Implications for Consumer Behavior. In: Virtual Social Identity and Consumer Behavior. Armonk: M. E. Sharpe, 2009. 230 p. HINSCH, Christian; BLOCH, Peter H. Interaction Seeking in Second Life and Implications for Consumer Behavior. In: Virtual Social Identity and Consumer Behavior. Armonk: M. E. Sharpe, 2009. 230 p. HIRSCHMAN, Elizabeth C.; HOLBROOK, Morris. Hedonic Consumption: Emerging Concepts, Methods and Propositions. In: Journal of Marketing. Chicago, v. 46, n. 3, p. 92-101, 1982. HOLBROOK, Morris; HIRSCHMAN, Elizabeth C. The Experiential Aspects os Consumption: Consumer Fantasies, Feelings, and Fun. In: Journal of Consumer Research. v. 9, p. 132-140, 1982. KAMEL, Leila El. For a better exploration of metaverses as consumer experiences. In: Virtual Social Identity and Consumer Behavior. Armonk: M. E. Sharpe, 2009. 230 p. LARENTIS, Fabiano. Premissas e perspectivas a respeito do consumidor. In: Comportamento do Consumidor e Marketing de Relacionamento. 1.ed. Porto Alegre: IESDE, 2008. p. 9-20. PETER, J. Paul; OLSON, Jerry C. Comportamento do consumidor e estratégia de marketing. 8. ed. São Paulo: McGraw-Hill, 2009. 555 p. PETER, J. Paul; OLSON, Jerry C. Comportamento do consumidor e estratégia de marketing. 8. ed. São Paulo: McGraw-Hill, 2009. 555 p. SCHMITT, Bernd H. Experiential Marketing. In: Journal of Marketing Management. n. 15. [S.l]: Westburn Publishers Ltd, 1999. p. 53-67. SCHMITT, Bernd H. Marketing experimental. Tradução Sara Gedanke. São Paulo: Nobel, 2000. p. 11; 41; 76-77. SCHMITT, Bernd H. Marketing experimental. São Paulo: Nobel, 2002. SEVERINO, Antônio Joaquim. Metodologia do trabalho científico. 23ed. rev. e atualizada. São Paulo: Cortez, 2007. p. 99-126. SHELTON, Ashleigh K. Defining the lines between virtual and real world purchases: Second Life sells, but who’s buying? Minneapolis, 2010. REFERÊNCIAS LEIGH, James H.; GABEL, Terrance G.Symbolic Interactionism: Its Effects on Consumer Behavior and Implications for Marketing Strategy. The journal of Services Marketing, v. 6, n. 3, p. 5-9, 1992. LINDEN LAB, 2010. Disponível em <http://lindenlab.com/pressroom/releases/pt_22_09_09> Acesso em 24/10/2010. NEVES, José Luis. Pesquisa Qualitativa – características, usos e possibilidades. Caderno de Pesquisas em Administração. v. 1, n. 3, 2º semestre. São Paulo: USP, 1996. p. 1-5. OKADA, Erica M. Justification Effects on Consumer Choice of Hedonic and Utilitarian Goods. In: Journal of Marketing Research. v. 42, 2005. p. 43-53. PARMENTIER, Guy; ROLLAND, Sylvie. Consumers in virtual worlds: identity building and consuming experience in Second Life. In: Recherche et Applications en Marketing. v. 24 n. 3/2009. p. 43-55. WOOD, Natalie T.; SOLOMON, Michael R. (Ed.). Virtual social identity and consumer behavior. Armonk: M. E. Sharpe, 2009. p. 230. YIN, Robert K. Estudo de Caso: planejamento e métodos. 2. ed. Porto Alegre: Brookman, 2001. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. THILMANY, Jean. Real-Life business in Second Life. In: Mechanical Engeneering. p THILMANY, Jean. Real-Life business in Second Life. In: Mechanical Engeneering. p. 64. TIKKANEN, Henrikki; HIETANEN, Joel; HENTTONEN, Tuomas; ROKKA, Joonas. Exploring virtual worlds: success factors in virtual world marketing. In: Manegement decision. v. 47 n. 8, 2009. Emerald Group Publishing Limited. p. 1357-1381. VERGANI, Danielle Adria; ANDRADE, Lisandra. O Second Life como ambiente de pesquisa e teste para lançamento de produtos. In: Congrasso Brasileiro de Pesquisa e Desenvolvimento em Design, 8, 2008, São Paulo. Anais... São Paulo: AEND, 2008. p. 2491-2502. WANDT, Holger, Opinion piece: Second Life, second identity? Journal of targeting, measurement and analysis for marketing. v. 15, n. 3. [S.l.]: Palgrave Macmillan, 2007. p. 195-197. WOOD, Natalie T.; SOLOMON, Michael R. (Ed.). Virtual social identity and consumer behavior. Armonk: M. E. Sharpe, 2009. p. 230. Data do recebimento do artigo: 19/02/2014 Data do aceite de publicação: 05/01/2015 Data do recebimento do artigo: 19/02/2014 SHELTON, Ashleigh K. Defining the lines between virtual and real world purchases: Second Life sells, but who’s buying? Minneapolis, 2010. SOLOMON, Michael R. O comportamento do consumidor: comprando, possuindo e sendo. 7. ed. Porto Alegre: Bookman, 2008. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 119 Isadora Camila Marques Soares, Yákara Vasconcelos Pereira Leite, Viviane Santos Salazar & Lílian Caporlíngua Giesta TAURION, Cezar. Mundos Virtuais Pessoas Reais. v. 2 [S.l] 2009. p. 52-23. TERDIMAN, Daniel. The entrepreneur’s guide to Second Life: making money in the metaverse. Indianapolis: Wiley Publishing, Inc., 2008. ABSTRACT This study aims at investigating how does the consumer experience in Second Life. For this, we used a qualitative case study. Data collection was developed through participant observation, dialogue inspired by ethnography and semi-structured interviews. Content analysis guided obtaining results. It was found that feelings related to the procurement process are similar to what is felt by respondents to make purchases in real life and, in some cases, are even more pleasurable. Keywords: Second Life; Marketing; Experience consumes; Consumer behavior. Revista de Administração e Inovação, São Paulo, v.12, n.1, p.98-120, jan./mar. 2015. 120
https://openalex.org/W4295866772
https://www.ufrgs.br/det/index.php/det/article/download/906/334
Portuguese
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Design de joias: proposição de metodologia para ensino voltado ao mercado joalheiro
Design & Tecnologia
2,022
cc-by
14,997
PALAVRAS-CHAVE PALAVRAS-CHAVE Joalheria; Design; Metodologia; Ensino Mariana K. Cidade1; Felipe L. Palombini2 1 Departamento de Desenho Industrial, Universidade Federal de Santa Maria, Santa Maria, Brasil 1 Departamento de Desenho Industrial, Universidade Federal de Santa Maria, Santa Maria, Brasil 2 Programa de Pós-Graduação em Botânica, Universidade Fede- ral do Rio Grande do Sul, Porto Alegre, Brasil KEYWORDS Jewelry; Design; Methodology; Teaching REVISTA DESIGN & TECNOLOGIA ISSN: 2178-1974 2022, Vol. 12, No. 24 DOI 10.23972/det2022iss24pp57-72 REVISTA DESIGN & TECNOLOGIA ISSN: 2178-1974 2022, Vol. 12, No. 24 DOI 10.23972/det2022iss24pp57-72 www.pgdesign.ufrgs.br www.pgdesign.ufrgs.br RESUMO A joalheria é uma atividade técnico-artística executada por profissionais com variadas formações, desde desig- ners, arquitetos, engenheiros, artistas e outros. Historicamente, a joalheria vem evoluindo não apenas com relação a materiais, processos de fabricação e estilos, mas com novos métodos de criação e desenvolvimento. Recentemente, com uma maior implementação de práticas instrucionais de joalheria, tanto em nível superior quanto em cursos de aperfeiçoamento, nota-se uma carência de metodologias específicas voltadas à esta área, que possam ser empregadas tanto no meio acadêmico quanto profissional, a partir da formação do aluno. Este artigo apresenta uma proposição de metodologia para instrução de design de joias, com o objetivo de mostrar ao discente diferentes perfis que envolvem a cadeia produtiva para capacitá-lo a atuar no ramo. Foram condu- zidas entrevistas informais com profissionais da área com diferentes estilos de projeto, levando à identificação de características essenciais para a construção de um determinado perfil de atuação em joalheria. A partir dessas propriedades, foi elaborada uma metodologia abrangendo desde a motivação inicial do projeto, pas- sando por etapas de identificação de tipo de atuação, definição de problema, pesquisa, elaboração de conceito e requisitos de projeto, execução de processos criativos e de fabricação, até a validação da peça obtida. Por fim, destaca-se que a metodologia proposta surge como uma base para diferentes níveis de ensino, para que o aluno possa conhecer as etapas gerais da cadeia produtiva e se tornar apto a seguir profissionalmente, mas que, sobretudo, possa adaptá-la conforme seu fluxo de trabalho e seu modo preferido de atuação. 1. INTRODUÇÃO As metodologias a serem seguidas nos proces- sos criativos de design surgiram, em grande parte, após a Se- gunda Guerra Mundial (SCHNEIDER, 2010), quando os países industrializados passaram por um grande crescimento econô- mico, com um aumento na concorrência de mercados diversos. Para isto, era necessário que o design se adaptasse a configu- rações voltadas à construção e produção, deixando fatores sub- jetivos e emocionais como secundários. Desse modo, é possível dizer que o projeto tornava-se mais sistematizado e organi- zado, com o objetivo de aumentar as taxas de sucesso dos de- senvolvimentos criativos. Atualmente, algumas metodologias tornaram-se ampla- mente utilizadas no ensino de design, trabalhando sobre dife- rentes vieses no desenvolvimento de produtos. Baxter (2011), por exemplo, detalha um método de design focado no ponto de vista da inovação em empresas. Desse modo, o processo cri- ativo é determinado pelas estratégias escolhidas pelas empre- sas, devendo ser focado em como são as intenções das mesmas para obterem sucesso comercial. Após estabelecidos os objeti- vos dessas orientações gerais, passa-se para o desenvolvi- mento de um produto específico. Em seguida, ocorre um perí- odo de pesquisa e análise das oportunidades e restrições deste desenvolvimento, sendo encerrado pelas especificações e jus- tificativas do novo produto gerado. Baxter (2011) tem um ponto de vista industrial ao determinar sua metodologia a ser seguida no design de produtos. Da mesma forma, o autor apre- senta diversas ferramentas auxiliares neste processo, desde ge- ração de ideias, até para seleção criteriosa e confirmação dos requisitos propostos. Já Löbach (2001) leva o design como um processo de resolução de problemas. Na metodologia, o autor afirma que o processo a ser seguido parte da definição do pro- blema, passando para etapas de levantamento de informações sobre esta situação, buscando serem analisadas e relacionadas entre si. São criadas alternativas de solução para o mesmo, sendo julgadas por determinados critérios, tendo a alternativa mais adequada desenvolvida, isto é, sendo transformada em um produto. As quatro fases são definidas como preparação, geração, avaliação e realização. Desse modo, um aspecto dife- rente da metodologia proposta por Baxter (2011), é que o de- senvolvimento de um produto parte de uma necessidade de re- solver um problema que o mesmo apresenta e não através de objetivos de obtenção de inovação. Löbach (2001) afirma que a metodologia precisa vir da necessidade do usuário, como este sendo um fator causador do problema no design. 1. INTRODUÇÃO longe. O autor afirma inclusive que há casos em que a indústria tende a inventar falsas necessidades, numa tentativa de forçar a produção e venda de novos produtos. O designer não deve deixar-se envolver, então, por operações que visam ao exclu- sivo lucro industrial (MUNARI, 2008). O autor compara o ato projetual como seguir uma receita, de modo explicado, siste- mático e eficiente. Munari (2008) reafirma que criatividade não é um exercício de improvisação sem método, mas que também existe a possibilidade de a metodologia ser flexível, adaptável a necessidades. A metodologia proposta pelo autor prevê, entre- tanto, uma abordagem precisa e segura, em que não há esfor- ços desnecessários. O design é considerado uma atividade criadora, que necessita de senso de invenção e inovação técnica, considerado um ato de exercício mental (BÜRDEK, 2010). Como método criativo, o design é movido por um processo de desenvolvimento, com es- colhas, decisões, atribuições e valores projetuais pré-determi- nados. Bürdek (2010) cita diversos fatores que contribuem para a formulação de um design, como desenvolvimentos socioeco- nômicos, tecnológicos e culturais, fundamentos históricos, con- dições de produção técnica, bem como fatores ergonômicos, ecológicos, interesses políticos e exigências artístico-experi- mentais. Em resumo, o design precisa ser tratado de modo a unificar todos os fatores que o permeiam, desde suas primeiras concepções ao produto final. De todo modo, a criação de métodos projetuais permitiu que o design passasse a ser ensinável, aprendível e comunicá- vel (BAXTER, 2011). A importância deste embasamento torna a metodologia fundamental para o pensamento sistemático. A forma de ver o desenvolvimento de produtos permitiu passar de “como projetar” para “o quê projetar”. Ainda que os princi- pais autores de metodologias de design afirmem que o objetivo do design é a resolução de problemas, sejam eles de projeto (criar ou melhorar produtos), de usuários (satisfazer as neces- sidades ou desejos dos consumidores) ou de empresas (buscar o lucro e o sucesso comercial), é comum a todos a união do produto com o usuário. Baxter (2011) comenta da introdução e da importância do conhecimento empírico na metodologia do design. Por se tratar de uma ciência com muito vínculo com usuários, há um determinado número de variáveis imprevisí- veis, resultantes do comportamento humano perante as cria- ções desenvolvidas. Para o desenvolvimento apropriado de um projeto são se- guidas determinadas séries de etapas para se atingir os objeti- vos propostos. ABSTRACT Jewelry is a technical-artistic activity performed by professionals with varied backgrounds, from designers, ar- chitects, engineers, artists, and others. Historically, jewelry has evolved not only with regard to materials, man- ufacturing processes and styles, but with new methods of creation and development. Recently, with a greater implementation of instructional practices in jewelry, both at higher education and at improvement courses, one can notice a lack of specific methodologies aimed at this area, which can be used both in academic and professional environments, as of the training of the student. This paper presents the proposal of a methodology for the teaching of jewelry design, with the aim of showing students different profiles that involve the produc- tion chain and to enable them to work in the field. Informal interviews were conducted with professionals in the area with different project styles, leading to the identification of essential characteristics for the construc- tion of a specific acting profile in jewelry. From these properties, a methodology was developed, covering from the initial motivation of the project, through stages of identifying the nature of the acting, problem definition, research, concept and project requirements elaboration, execution of creative and manufacturing processes, until the validation of the obtained piece. Finally, it is noteworthy that the proposed methodology appears as a basis for different levels of education, so that the student can know the general stages of the production chain and become able to follow it professionally, but, above all, that they can adapt it according to their workflow and preferred way of acting. CONTATO: Mariana K. Cidade – mariana.k.cidade@gmail.com © 2022 – Revista Design & Tecnologia NTATO: Mariana K. Cidade – mariana.k.cidade@gmail.com 58 Design & Tecnologia 24 (2022) 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Ao longo dos séculos, a joalheria desenvolveu uma variedade de diferentes funções, podendo portar significados simbólicos, sociais, econômicos, religiosos, além de, naturalmente, possuir a função de adornar, embelezar, e ser também considerada uma forma de comunicação. Com isto, a joalheria tem sido ob- jeto de inúmeras interpretações, sendo uma área multidiscipli- nar, que engloba arte, materiais, técnicas, processos, antropo- logia, artesanato e design. Desde os primórdios (40.000 a.C.), materiais e técnicas de manipulação têm sido descobertos e aprimorados pelas civilizações, iniciando-se com o deslumbre e curiosidade dos materiais naturais, tais como ossos, presas e couros oriundos das caças, sementes, rochas, madeiras, con- chas, fibras vegetais, etc., sendo posteriormente evoluído para a inserção de ligas metálicas e gemas (BAYSAL, 2019). Os mate- riais foram conformados, modificados, misturados e adapta- dos, na confecção de ferramentas, ornamentos e utensílios, desse modo contribuindo continuamente para a qualidade de vida (GOLA, 2013; HESKETT, 2008). Entretanto, mais do que da- rem forma física aos objetos e adornos, os materiais e proces- sos conferem um importante papel estético, simbólico, funcio- nal e estrutural, fazendo parte de mudanças históricas na hu- manidade (ASHBY; JOHNSON, 2011; LESKO, 2012). Segundo Cappellieri, Tenuta e Testa (2020), de um lado, temos a arte, com a altivez de sua autoria, de outro, a moda, com a transitoriedade do seu presente, e no meio, a joalheria com a defesa de seus materiais nobres como bastiões da eter- nidade e do simbolismo. Se, por muito tempo, o valor de uma joia foi sinônimo de preciosidade e nobreza, hoje essa ideia está definitivamente sendo modificada (BA’AI; HASHIM, 2015). Os materiais e a preciosidade tangível das peças não são mais os únicos elementos caracterizadores para definir se um objeto pertence ou não à esfera do luxo (CAPPELLIERI, TENUTA, TESTA, 2020). O material, independentemente de ser ouro, platina, di- amantes, esmeraldas, madeira, polímeros, rochas ou, até mesmo, resíduos oriundos do lixo, é uma escolha de design, onde as técnicas, tecnologias, acabamentos e os conceitos da- dos às joias são desenvolvidos com foco nas mudanças que a sociedade apresenta, em termos de escolhas, aptidões, visões sustentáveis, questões sociais, culturais e econômicas, entre outras. Esse novo modo de projeto joalheiro, referente a pro- cessos criativos, escolhas de materiais inusitados e processos de fabricação adequados com um bom acabamento, é utilizado devido a mudanças em diversas esferas que aconteceram ao longo dos séculos. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Alguns autores citam que o “boom” inicial deu-se na Revolução Industrial no século XVIII, (BÜRDEK, 2010; CAPPELLIERI; TENUTA; TESTA, 2020; GOLA, 2013; HESKETT, 2008), com a transição de métodos de produção artesanais para automatizados, passando pelas chamadas Segunda e Ter- ceira Revoluções até a Contemporaneidade. É importante des- tacar o paralelismo entre o desenvolvimento atual da indústria joalheira e o do design de produto, frente desde às modifica- ções dos processos produtivos, à seleção de materiais, até às opções de estética e estilo. Na Figura 2, é ilustrada uma linha do tempo geral, exemplificando as épocas e seus acontecimen- tos, em torno das joias, materiais e processos. Segundo Gola (2013), desde o início de sua existência o homem produz elementos artísticos associados a ornamentos – as joias, revelando sua criatividade, representando os símbo- los de cada época e colocando, em destaque, a dimensão esté- tica do mundo material e das formas naturais. De um modo ge- ral, os termos de adornos e joias estão conectados tanto a atri- butos de melhoria e qualidade, quanto de prazer e alegria. As palavras “joia” e “joalheria” são originadas do anglo-francês “juel” ou do francês antigo “jouel”, representando presentes, ornamentos e gemas; primordialmente, são derivados do latim “jocus”, ou aquilo que causa alegria (ETYMOLOGY DICTIONARY, 2017). Ornamento, ornamentação, ornamental, são derivações do verbo “ornare” que, na concepção latina original, significa adornar, embelezar ao corpo (GOLA, 2013). A forma de adornar o corpo de modo a trazer prazer por meio de aprimoramentos estéticos é, então, uma das primeiras características da joia. Em todos os tempos, os adornos tiveram também o propósito de construir novas linguagens e, com elas, significados eficientes na elaboração de identidades pessoais (GOLA, 2013). Com a industrialização, o consumo de joias de ouro e cra- vejadas de diamantes tornou-se relativamente mais acessível a uma parcela maior da sociedade em função do advento da pro- dução em série, bem como do estágio econômico da sociedade, que possibilitava comprá-las (GOLA, 2013). Isto estimulou o de- senvolvimento de indústrias de joias na Europa e nos Estados Unidos. 1. INTRODUÇÃO Já Baxter (2011) afirma que a demanda e os desejos dos consumidores são apenas algumas das fontes de informação para pesquisa, juntamente com a concorrência dos produtos existentes e com as oportunidades tecnológicas para a fabricação. No mercado joalheiro, os profissionais envolvidos no pro- cesso criativo de uma ou inúmeras peças utilizam-se de méto- dos projetuais variados, não sendo utilizada uma metodologia específica para este tipo de produto. Já no meio acadêmico, muitos cursos acabam adaptando metodologias existentes para projeto de produto na criação e desenvolvimento de joias. Quanto aos profissionais do mercado, com formações variando desde design, arquitetura, engenharia, artes e outras, além de joalheiros, há a tendência de utilizar várias técnicas criativas de forma diferenciada, por exemplo, desde criações à mão livre ou com instrumentos (Figura 1) quanto com softwares 3D, sem possuir necessariamente um único padrão pré-estabelecido. Esta variedade e liberdade de meios e técnicas pode acabar di- ficultando o ensino da prática projetual de joias. Figura 1 Processos de criação de joias utilizando diferentes materiais e técnicas de ilustração e representação. Fonte: Autores (2022). Figura 1 Figura 1 Processos de criação de joias utilizando diferentes materiais e técnicas de ilustração e representação. Fonte: Autores (2022). A partir de uma carência de metodologias específicas para design de joias, é notada uma dificuldade no discente em com- preender as possíveis variações e caminhos a serem seguidos Já Munari (2008), além de também afirmar que a atividade projetual do designer deve basear-se na necessidade de seu usuário, buscando melhorar sua qualidade de vida, vai mais 59 Design & Tecnologia 24 (2022) 2007). Entretanto, mesmo com estas aplicações de metais não usuais na história da joalheria, os materiais metálicos tradicio- nalmente utilizados para a fabricação de joias são os chamados “nobres”, sendo o ouro, a platina e a prata os mais aplicáveis, estimados e duráveis. Os materiais nobres utilizados, como me- tais, diamante, rubi, esmeralda, entre outros, obtiveram esta denominação devido à sua pouca reatividade (resistência à cor- rosão, oxidação e deterioração), além de aspectos estéticos e simbólicos. O ouro, por exemplo, foi descoberto por volta de 5.000 a.C., onde sua estética, maleabilidade e resistência à oxi- dação, tornaram-no o material símbolo do divino (ASHBY; JOHNSON, 2011; BAYSAL, 2019; GOLA, 2013; KLIAUGA; FER- RANTE, 2009). Sua beleza e semelhança com a então divindade máxima, o Sol, em termos de tonalidade e brilho, chamou a atenção de quem o manuseava. 1. INTRODUÇÃO Além do ouro, demais materi- ais metálicos nobres tradicionalmente utilizados para a fabrica- ção de joias são a platina e a prata, onde, para sua manipulação, faz-se necessária a introdução de elementos de liga, tais como o cobre e paládio, e de solda, como o latão (KLIAUGA; FER- RANTE, 2009). Estes elementos são introduzidos em peças de joalheria para proporcionar uma maior resistência mecânica e dureza aos materiais tradicionais. Entretanto, alguns destes materiais também são utilizados como base em peças de biju- terias, como o latão e o cobre. em sua futura atuação profissional. Desse modo, este artigo tem como objetivo e principal fator de motivação a proposição de uma metodologia específica para o design de joias, voltada ao meio acadêmico, de modo a preparar o aluno a seguir dife- rentes perfis no mercado. Inicialmente, o tópico 2 aborda um breve histórico contendo definições gerais das principais ques- tões relacionadas à joalheria até a contemporaneidade, neces- sárias para estabelecimento das bases seguidas no artigo. Em seguida, são apresentados alguns processos de criação utiliza- dos no mercado joalheiro, relatados por meio de exemplos e de entrevistas informais realizadas com profissionais do ramo. Por fim, é proposta uma metodologia simplificada, através do cru- zamento das informações levantadas, para auxiliar na ligação do ensino com as práticas desenvolvidas fora da academia. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Esse tipo de produção com alto apreço para a estética e a função, culminou no movimento de Arts & Crafts, no final do século XIX, na Inglaterra (HESKETT, 2008). As ideias e os modelos de produção do movimento logo se espalharam para outros países europeus e para os Estados Unidos, exercendo uma influência significativa sobre o surgi- mento das primeiras ações modernistas voltadas para a joalhe- ria e o design (CARDOSO, 2008; MILLER, 2016). Com a renovação da valorização da estética e da boa qua- lidade nos produtos industrializados, cresce, na Europa, um movimento conhecido como Art Nouveau. O período marcou um sentido de vida artístico que deveria ser refletido nos pro- dutos do cotidiano (BÜRDEK, 2010). O estilo combatia a indus- trialização massificada, associando a arte e o artesanato nos principais objetos, com grande ênfase à ornamentação, de forma orgânica e natural (SCHNEIDER, 2010). Também como reflexo da massificação dos produtos nesta época, joalheiros europeus passaram a projetar adornos com o estilo conhecido como Belle Èpoque, como reação à banalidade das joias reco- bertas de diamantes herdadas do período da Revolução Indus- trial (PEDROSA, 2015). O Art Nouveau e o Art Decó também sur- gem com força e influenciam a joalheria, uma vez que procura- vam romper com o estilo de vida habitual da época (GOLA, 2013; MAGTAZ, 2008; MILLER, 2016). O surgimento destes es- tilos artísticos também reintroduziram diferentes materiais na joalheria, como ferro, bronze, latão, cobre, vidro, marfim e ma- drepérolas, além da consagração de gemas menos valorizadas (MILLER, 2016; PEDROSA, 2015). Já em termos de materiais ino- vadores para a joalheria, durante a época, destaca-se o desen- volvimento de zircônias, sendo posteriormente utilizadas como substitutas sintéticas de diamantes, em joias de menor valor (HESSE, 2007). Ainda que a produção massificada de joias fosse em vo- lume menor, em comparação a bens de consumo tradicionais, a indústria joalheira aliou-se ainda mais aos processos artesa- nais e diferenciados (GOLA, 2013), como por exemplo, técnicas que utilizavam detalhes em filigrana, compreendida pela utili- zação de fios metálicos muito finos, que são contorcidos e con- formados, criando desenhos nas peças (MILLER, 2016; PEDROSA, 2015); e estamparia com cinzelagem, na qual rele- vos, texturas e detalhes finos são fabricados com um cinzel. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Entretanto, com o decorrer da industrialização do pro- cesso produtivo, o combustível de todas as fábricas transfor- mou-se na necessidade de se obter lucros cada vez maiores através de um volume crescente de vendas para a classe média, A joalheria utiliza-se de materiais e técnicas de manipula- ção, através de inúmeros processos, tanto artesanais quanto industriais, as formas, os elementos e as técnicas foram se mo- dificando e se adaptando conforme o estilo e as tecnologias existentes em cada época. A exemplo, os antigos egípcios, gre- gos e romanos empregavam no desenvolvimento de estátuas, imagens simbólicas e armaduras, materiais como o latão (liga de zinco e cobre), além de também ter sido introduzido na fa- bricação de joias para a ornamentação, devido às suas proprie- dades maleáveis e por sua aparência remeter ao ouro (HESSE, 60 Design & Tecnologia 24 (2022) a nova força econômica das cidades (SCHNEIDER, 2010). Com esse objetivo, a qualidade de vida de grande parte da popula- ção decresceu, impulsionada pela abrangência dos distritos in- dustriais e seus estilos produtivos. De acordo com Heskett (2008), a partir da necessidade do crescimento das vendas, os fabricantes passavam a aumentar ainda mais a divisão de tra- balho, com a contratação dos chamados “consultores de esti- los”. Tais profissionais buscavam novos conceitos que pode- riam ser adotados pelo mercado joalheiro. Sob suas ordens, projetistas sem formação e com conhecimentos praticamente nulos produziam cópias baratas de outros produtos, sendo fa- bricados com materiais de qualidade cada vez menor, além de um apelo estético menos significativo; tudo manufaturado às custas de longas e insalubres jornadas de trabalho, com poucas condições de segurança e além de uma remuneração ainda me- nor (HESKETT, 2008). Figura 2 Linha do tempo da evolução da joalheria, da industrialização à contemporaneidade. Fonte: Autores (2022). do tempo da evolução da joalheria, da industrialização à contemporaneidade. Fonte: Autores (2022). Figura 2 Linha do tempo da evolução da joalheria, da industrialização à contemporaneidade. Fonte: Autores (2022). joalheiro as primeiras pérolas produzidas em cativeiro, que pas- saram a ser massificadas (HESSE, 2007). Insatisfeitos com os caminhos que a produção industrial estava seguindo, alguns pensadores com ideologias reformistas propuseram mudanças nas cadeias produtivas, visando à recu- peração do estilo e bom gosto (BÜRDEK, 2010). Essencial- mente, buscavam a volta da produção baseada na Idade Média, acreditando que a manufatura artesanal traria melhores condi- ções de vida para os trabalhadores. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Koulidou (2018), por exemplo, aborda o papel de componentes eletroe- letrônicos inovadores na fabricação da chamada digital jewel- lery (joalheria digital), com o objetivo de explorar as tecnologias digitais para enriquecer a intimidade e interação entre pessoas, lugares e a si mesmos. Na Figura 3 A e B é apresentado um relicário digital (Purple® Technologies) que apresenta fotogra- fias de memória afetiva em uma tela. Já na Figura 3 C, D, e E é mostrado um colar digital (Neclumi®) composto por um dispo- sitivo que utiliza os sensores presentes no smartphone do usu- ário (giroscópio, acelerômetro, microfone e bússola) e projeta luzes de geometrias que se modificam em tempo real. Neste mesmo sentido, Camargo (2018) utilizou tecnologias de siste- mas de captação de áudio e design generativo com software paramétrico (Grasshopper®) para associar experiências sono- ras individuais com as emoções do usuário na modelagem 3D de joias. Já Guerra e Cidade (2019) apresentaram o desenvolvi- mento de uma peça de joalheria com a utilização de materiais naturais celulares com a adição de óleos essenciais para aroma- terapia, visando ao alívio de alergias, como visto na Figura 3 F. Outro exemplo de materiais e técnicas diferenciadas aplicados na joalheria contemporânea é um projeto de estudo transdisci- plinar realizado por alunos de graduação da School of Jewellery da Birmingham City University, no Reino Unido (O’HANA; BOTTOMLEY, 2021). O projeto, iniciado em 2006, une a história têxtil do mediterrâneo e a joalheria contemporânea, através da combinação de processos artesanais e tecnológicos. O foco do estudo foi a produção de peças mesclando técnicas de tecela- gem com diferentes tipos de tecido provenientes de sobras de indústrias europeias, com exemplos apresentados na Figura 3 G e H Até o final dos anos 1990, as indústrias de joias brasileiras seguiam as tendências internacionais, sendo as peças, em sua maioria, consideradas cópias destas versões (GOLA, 2013). As indústrias acompanhavam as grandes feiras internacionais e re- produziam suas peças, através de catálogos e revistas, bem como investiam na importação de maquinário para fabricá-las ou, ainda, treinavam seus ourives para plagiá-las. Com a aber- tura do mercado, ainda nessa década, as importações trouxe- ram consigo a concorrência, o que provocou uma reformulação no mercado nacional joalheiro. Desse modo, surge a necessi- dade de adquirir tecnologia e materiais próprios, assim como um maior conhecimento das tendências de mercado para o de- senvolvimento de soluções estéticas próprias. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Já os anos de 1950 e 1960 fo- ram marcados por uma ruptura dos padrões até então vigentes, por uma forte reação à forma tradicional e comercial da produ- ção de joias, assim como por transformações sociais e morais (CAPPELLIERI; TENUTA; TESTA, 2020; WALLACE; DEARDEN, 2005). Mas foi somente na década de 1970 que a joia de imita- ção atingiu o seu auge, trazendo às indústrias joalheiras a ne- cessidade de inovar em suas criações (GOLA, 2013). Uma nova geração de designers de joias trouxe ideias e conceitos além de materiais à produção da época, como resinas e polímeros, tanto em vista dos novos padrões estéticos como pelo aumento do preço do ouro, que vem transformando a joalheria até os dias de hoje (CORBETTA, 2007). (e.g. com o uso de enxofre), tornando-o também um material contemporâneo. Alguns autores (BÜRDEK, 2010; CAPPELLIERI; TENUTA; TESTA, 2020; GOLA, 2013; HESKETT, 2008) comentam que o grande início deste novo modo de projeto joalheiro, re- ferente a processos criativos, escolhas de materiais inusitados e processos de fabricação adequados com um bom acaba- mento, foi utilizado devido a mudanças em diversas esferas que aconteceram ao longo dos tempos. Ao desafiar os preconceitos das joias tradicionais e sua as- sociação à riqueza, status social, além de posicionamento cul- tural e religioso, as joias contemporâneas usam novas formas e técnicas para enfatizar o valor da peça, em vez de simples- mente depender dos custos brutos dos materiais usados (WALLACE; DEARDEN, 2005). Novas fontes de inspiração, pro- cessos criativos, formas e composições, materiais e meios de fabricação permitem ser extrapolados a métodos não conven- cionais, que possam trazer um novo diferencial às peças desen- volvidas, dando maior liberdade as quem as produz e utiliza. Segundo Gong e Yuan (2017), o designer vê as joias como sua expressão de emoções ou personalidade, dando um novo con- ceito de vida às mesmas através dos materiais, cores, técnicas, etc. Da mesma forma, mesmo os métodos tradicionais de fabri- cação de joias podem ser combinados com novos materiais e tecnologias, de forma a enriquecer o significado e o valor de uma peça e enfatizar sua experiência sensorial com o usuário, conforme os adornos apresentados na Figura 3. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Ainda, é importante para este período o trabalho do artista René Lalique, com a estilização das formas da natureza, repre- sentada por modelos assimétricos e orgânicos em que gemas de pouco valor, ou até mesmo desprezadas, eram utilizadas em joias de grande valor, desde que cumprissem o efeito desejado (FAGGIANI, 2006; GOLA, 2013). No Brasil, o desenvolvimento da indústria joalheira decor- reu em meio à Segunda Guerra Mundial, trazendo característi- cas do Art Decó e da Era Industrial (GOLA, 2013). Por este mo- tivo, as joias da década de 1940 ficaram conhecidas como de “coquetel”, devido à mistura de temas e inspirações mundiais do século XX. Criadas em um contexto de crises e mudanças sociais, encontraram nas geometrias leves, feitas com ouro for- jado, um modo a continuar reproduzindo o efeito de ostenta- ção durante a crise, uma vez que simulavam peças grossas e pesadas (GOLA, 2013). Na Europa, ao término da Segunda Guerra Mundial, que ocasionou o fim das privações, os metais e gemas encontravam-se em escassez. Os joalheiros que con- seguiram manter seus negócios passaram a experimentar e A Idade Contemporânea foi marcada tanto pela “desco- berta” quanto pela primeira utilização de metais importantes para a joalheria, como a platina, níquel, estanho, titânio, palá- dio e ródio (GOLA, 2013; HESSE, 2007). O período ainda levou ao desenvolvimento de ouro multicolorido, através de ligas com diversos elementos (HESSE, 2007). Ainda, foram aplicados os processos de eletrodeposição de metais nobres, como ouro e prata, o que, posteriormente, contribuiria para o desenvolvi- mento de técnicas de banho em bijuterias, para reduzir os cus- tos da fabricação de joias. O mesmo período trouxe ao mercado 61 Design & Tecnologia 24 (2022) construir peças com materiais banhados a ouro (CAMPOS, 2011). Juntamente, em meio a este cenário financeiro de pós- guerra, que inibiu a exibição de fortuna e luxo na forma de joa- lheria, surge o design de peças que imitavam as joias, as bijute- rias (GOLA, 2013). Estas são conhecidas como peças de pouco valor intrínseco, sendo atualmente caracterizadas por não uti- lizarem materiais nobres em sua produção, mas ligas metálicas como latão (cobre e zinco) e zamak (zinco em ligas com a alu- mínio, magnésio e cobre); caracterizam-se também por serem recobertas em banhos por finas camadas de ouro, prata ou ní- quel, bem como por não apresentarem primor pelo acaba- mento, ou variação nos projetos. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Juntamente com seu baixo valor de mercado e sua 62 Design & Tecnologia 24 (2022) dos problemáticos para utilização na joalheria são os estudos de caso de reciclagem de cápsulas poliméricas de café de uso único (CIDADE et al., 2021; MELCHIORS; PALHANO; CIDADE, 2020), como visto na Figura 3 J; a recuperação de câmaras de pneus usadas de bicicleta com gravação e corte a laser (CAMARGO et al., 2019; PALHANO; CIDADE, 2021); a recicla- gem de vidros oriundos de lixo doméstico para utilização como substituto de gemas (BLAYA et al., 2019; CADORE, 2015; MOSTARDEIRO; ODERICH; CIDADE, 2019); utilização de rochas ornamentais oriundas de resíduos de marmorarias e pedreiras (AMARAL; PALOMBINI; CIDADE, 2018; GRIGOLO; CIDADE, 2018); a reutilização de componentes de lixo eletroeletrônicos, conhecidos como e-waste e reciclagem de cobre dos fios destes produtos como elemento de liga para a prata utilizada (CINTRA; CIDADE, 2020). baixa densidade, torna-se pouco viável seu transporte em gran- des quantidades para tratamento, quando descartado. Os au- tores propuseram um método para reciclar quimicamente o material e empregá-lo como destaque na fabricação de peças com prata reciclada, auxiliando para elevar seu valor agregado e proporcionando uma nova aplicação ao resíduo (Figura 3 I). baixa densidade, torna-se pouco viável seu transporte em gran- des quantidades para tratamento, quando descartado. Os au- tores propuseram um método para reciclar quimicamente o material e empregá-lo como destaque na fabricação de peças com prata reciclada, auxiliando para elevar seu valor agregado e proporcionando uma nova aplicação ao resíduo (Figura 3 I). e proporcionando uma nova aplicação ao resíduo (Figura 3 I). Figura 3 Exemplos de peças de joalheria contemporânea: (A) e (B) relicário digital Purple® Technologies; (C), (D) e (E) colar digital Neclumi®; (F) colar para alívio de alergias; (G) brinco e (H) pulseira com técnicas de tecelagem; (I) anel de prata e EPS reciclado; (J) pingente de prata e vidro reciclado. Fonte: (A-E) Koulidou (2018); (F) Guerra e Cidade (2019); (G-H) O’Hana e Bottomley (2021); (I) Palombini e Cidade (2021); (J) Cidade et al. (2021). Outros trabalhos de recuperação de resíduos considera- Como visto, além de aspectos sustentáveis, materiais inu- sitados e tecnologias inovadoras, a joalheria contemporânea também tem sido vista como um meio do designer expressar a visão do mundo que ele quer comunicar (SCARPITTI, 2021). 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Com isto, muitas indústrias brasileiras buscaram novas formas de lucratividade, introduzindo, assim, designers em suas equipes para o desen- volvimento de joias exclusivas. Desse modo, não apenas novas tendências de materiais e processos de fabricação para a joa- lheria apareciam, mas também o surgimento de estilos e con- ceitos próprios. Ao contrário das joias clássicas, nas quais materiais nobres e raros estão sempre presentes, como ouro, platina, diamantes e outras gemas preciosas, na então chamada joalheria contem- porânea, novos materiais inusitados foram introduzidos, como madeiras, tecidos, sementes, rochas ornamentais, fibras natu- rais, múltiplas ligas metálicas, borrachas, polímeros, materiais cerâmicos, entre outros (BA’AI; HASHIM, 2015; BALAGUERA, 2013; CAPPELLIERI; TENUTA; TESTA, 2020; CIDADE et al., 2016; CIDADE; PALOMBINI; KINDLEIN JÚNIOR, 2015). As novas tecno- logias também foram um ponto de inflexão para o desenvolvi- mento de joias contemporâneas como, por exemplo, o uso de jato de água (DE ABREU E LIMA et al., 2016), gravação a laser (CIDADE et al., 2018), manufatura aditiva (MILEWSKI, 2017), e utilização de materiais naturais para o bem-estar (GUERRA; CIDADE, 2019). Os chamados materiais inusitados vêm sendo utilizados, muitas vezes, como o único material da peça, desde que apresentando um grande nível de acabamento, por meio de diferentes tecnologias. Além disso, joias desse tipo também estão sendo projetadas e fabricadas contrastando a presença de materiais não-convencionais juntamente com a adição de prata (Ag 950). Este metal está sendo muito utilizado na atuali- dade em virtude de seu custo-benefício, e das inúmeras formas de manipulação no processo produtivo como, por exemplo, a inclusão de texturas e de oxidações diferenciadas intencionais Além de possuir foco na busca por novos materiais e pro- cessos de fabricação, a joalheria contemporânea também tem se caracterizado pela abordagem de questões pertinentes à so- ciedade. Entre eles, é notável a grande importância dada a atri- butos de sustentabilidade, englobando seu espectro social, am- biental e econômico. A exemplo, Moreno e Cidade (2019) e Pa- lombini e Cidade (2021) analisaram a situação do descarte de lixo no município de Santa Maria e Porto Alegre, e verificaram que o poliestireno expandido (EPS) é um dos tipos de resíduo mais problemáticos em virtude de não possuir uma destinação apropriada. 2. JOALHERIA: CAMINHO À CONTEMPORANEIDADE Mais do que uma questão de embelezar pessoas pela ornamen- tação, ela visa incorporar valores imateriais e estimular a refle- xão sobre o mundo e os objetos, e quebrar paradigmas do que é considerado valioso e estimável. Para alcançar estes objeti- vos, diferentes técnicas de criação e desenvolvimento podem ser seguidas, a depender dos tipos de trabalhos e intenções do profissional. Desse modo, para o desenvolvimento de uma me- todologia voltada ao ensino de joalheria, torna-se fundamental investigar como profissionais de diferentes perfis abordam o processo criativo na prática. 3. CRIAÇÃO E DESENVOLVIMENTO NA JOALHERIA Para o processo de desenvolvimento de joias, usualmente três tipos de profissionais estão envolvidos, sejam eles designers (com formação em produto, gráfico, visual e joias), joalheiros e ourives. Geralmente, tanto os designers quanto os joalheiros atuam no desenvolvimento do processo criativo, na fabricação artesanal e industrial, e na venda de peças. Mas existem, ainda, designers que fazem somente o processo criativo e a venda de peças, não atuando diretamente no processo de fabricação. Já os ourives, em sua grande maioria, focam-se somente na fabri- cação artesanal, muitas vezes trabalhando em indústrias ou em seus ateliês individuais. Por sua vez, a sua demanda de trabalho vem de pedidos de indústrias ou dos próprios designers. Por ser uma área específica que muitas vezes não é tra- tada dentro dos cursos de graduação em design no Brasil, o de- sign de joias também pode ser instruído por meio de uma qua- lificação obtida sob a forma de cursos de aperfeiçoamento ou especializações. Em virtude da ausência de uma regulamenta- ção no país, existem ainda, no ramo joalheiro, muitos profissio- nais informais que atuam como designers e joalheiros, inde- pendentemente de terem uma formação específica na área. Contudo, é importante destacar que a joalheria é, acima de tudo, uma manifestação técnico-artística possível de ser explo- rada por todos, de modo que cada profissional pode desenvol- ver seu próprio método de criação e fabricação. De modo geral, independentemente do background do profissional atuante no ramo, todas produções envolvem manipulação, tanto de mate- riais e processos, criatividade e relacionamento com clientes, sejam eles o usuário final ou uma indústria. Com a grande vari- edade de profissionais envolvidos, diferentes processos criati- vos podem ser encontrados. Desse modo, torna-se importante analisar como profissionais com perfis distintos atuam. Figura 3 a 3 Exemplos de peças de joalheria contemporânea: (A) e (B) relicário digital Purple® Technologies; (C), (D) e (E) colar digital Neclumi®; (F) colar para alívio de alergias; (G) brinco e (H) pulseira com técnicas de tecelagem; (I) anel de prata e EPS reciclado; (J) pingente de prata e vidro reciclado. Fonte: (A-E) Koulidou (2018); (F) Guerra e Cidade (2019); (G-H) O’Hana e Bottomley (2021); (I) Palombini e Cidade (2021); (J) Cidade et al. (2021). 3.1 Entrevistas com profissionais Figura 5 Coleção 7 Ervas: (A) anel; e (B) pingente. Fonte: Griebler (2021). Figura 4 Exemplo do processo de criação e desenvolvimento da entrevistada E1: (A) painel de referência temática; (B) desenhos e esboços preliminares; (C) desenho artístico pintado à mão; (D) vetorização da peça; e (E) joia finalizada. Fonte: entrevistada E1 (arquivo pessoal). Figura 5 Coleção 7 Ervas: (A) anel; e (B) pingente. Fonte: Griebler (2021). A designer buscou, em sua inspiração, algumas plantas e elementos naturais que remetessem à proteção, aplicando-as sob a forma de pingentes diversos, onde estes possuem um movimento próprio. No anel (Figura 5 A), os pingentes de ervas são conectados em um mesmo ponto central da peça, de modo que, com a movimentação da mão do usuário, possam ganhar destaque. Já no pingente (Figura 5 B), os elementos são posici- onados ao longo de um elemento circular com palavras com a temática em baixo relevo, mantendo também o efeito de mo- vimentação. Figura 4 Exemplo do processo de criação e desenvolvimento da entrevistada E1: (A) painel de referência temática; (B) desenhos e esboços preliminares; (C) desenho artístico pintado à mão; (D) vetorização da peça; e (E) joia finalizada. Fonte: entrevistada E1 (arquivo pessoal). Figura 4 A terceira entrevista realizada (E3) foi com uma profissio- nal com 5 anos de profissão, tendo iniciado o gosto pela joalhe- ria ainda na sua graduação em design de produto. A mesma re- lata que a inspiração para o processo criativo das peças pode surgir tanto de fatos mais óbvios quanto de mais estranhos. Imagens aleatórias, frases estampadas nas mídias eletrônicas, momentos históricos, moda, elementos naturais, materiais di- ferenciados, aspectos simbólicos e culturais: todos são elemen- tos de construção para a inspiração. No início de sua carreira, as inserções de painéis de referências temáticas eram presen- tes, mas hoje raramente são utilizados, pois o processo criativo segue com uma variedade de informações e com uma certa ra- pidez, demandada em virtude do mercado. A entrevistada tam- bém descreve que gosta de utilizar temas irreverentes e de de- Muitas vezes, essas observações são feitas através da montagem de painéis de referências temáticas, através de re- cortes de revistas aleatórias, ou somente a visualização de ima- gens de mídia digital e impressa (Figura 4 A). 3.1 Entrevistas com profissionais O objetivo foi de coletar informações de profissionais com estilos de criação distintos para abranger múltiplos perfis, visando auxiliar a elaboração da metodologia. Ao total, foram entrevistados sete profissionais, de maneira se- mipresencial com acesso aos seus respectivos locais de traba- lho. Foram priorizados perfis diferenciados, como designers de produtos e joias, joalheiros e profissionais com formação téc- nica, incluindo experiencia profissional, meios de atuação – sendo autônoma ou industrial – e processos de fabricação nor- malmente utilizados. Os profissionais entrevistados são basea- dos no Rio Grande do Sul, porém atuam em diferentes estados brasileiros além de forma internacional. A entrevistada E2, possui 18 anos de atuação no setor in- dustrial, onde desenvolve a criação de coleções através de de- senhos a mão e programação em software 3D, para posterior fabricação por usinagem em cera (controle numérico computa- dorizado – CNC) e/ou manufatura aditiva em resina (estereoli- tografia – STL). A profissional faz suas criações através de pes- quisas de temáticas especificas de tendências relatadas em workshops efetuados por órgãos e associações da área. Estes eventos são realizados todos os anos, envolvendo transferên- cias de conhecimentos sobre as tendências futuras de consumo e mercado a serem seguidas para guiar o processo criativo de coleções joalheiras. Os workshops são ministrados por consul- tores especializados, os quais trazem imagens ilustrativas, te- mas simbólicos e aspectos visuais internacionais, que levam em consideração fatores sobre o mundo da moda, além de ques- tões sociais, culturais e de comportamento, e onde os designers assimilam as informações e as transpassam em seus projetos. A exemplo, na Figura 5 é mostrada uma coleção idealizada re- centemente pela entrevistada E2, onde sua inspiração deu-se através do tema de proteção através de plantas, denominada de coleção 7 ervas. A primeira entrevistada, denominada de E1, é uma profis- sional com mais de 21 anos de experiência, atuando dentro da indústria e de forma autônoma. A Figura 4 apresenta exemplos de seu processo de criação e desenvolvimento de joias. Se- gundo a entrevistada, sua etapa de inspiração dá-se pela obser- vação do mundo a sua volta, sendo estes aspectos diversos, desde a natureza, padrões arquitetônicos, dança e arte, entre outros. Também relata que a observação de tendências da moda, desde as cores presentes em estampas de tecidos até os acessórios, tais como óculos, calçados e bolsas que irão compor looks, são muito importantes para o processo. 3.1 Entrevistas com profissionais Para o desenvolvimento de joias, sendo uma peça única ou uma coleção, as técnicas criativas utilizadas são inúmeras e variam dentre os profissionais do ramo. Deste modo, ao propor uma Outros trabalhos de recuperação de resíduos considera- 63 Design & Tecnologia 24 (2022) esquematização das principais etapas e processos seguidos, para posterior aplicação em uma metodologia básica, torna-se necessário identificar os diferentes meios de atuação encontra- dos. Para auxiliar na distinção entre os perfis de processos cria- tivos e de desenvolvimento, foram realizadas entrevistas infor- mais com profissionais da área com diferentes históricos e ex- periências. Foram levantadas questões relacionadas com o tempo de carreira, envolvendo a área de projeto de joias, e quais são as principais etapas e modos de criação que o profis- sional costuma seguir. O objetivo foi de coletar informações de profissionais com estilos de criação distintos para abranger múltiplos perfis, visando auxiliar a elaboração da metodologia. Ao total, foram entrevistados sete profissionais, de maneira se- mipresencial com acesso aos seus respectivos locais de traba- lho. Foram priorizados perfis diferenciados, como designers de produtos e joias, joalheiros e profissionais com formação téc- nica, incluindo experiencia profissional, meios de atuação – sendo autônoma ou industrial – e processos de fabricação nor- malmente utilizados. Os profissionais entrevistados são basea- dos no Rio Grande do Sul, porém atuam em diferentes estados brasileiros além de forma internacional. melhores, no sentido dos que mais vão ao encontro do objetivo da coleção, sendo refinados através de desenhos artísticos pin- tados à mão (Figura 4 C) e de desenhos técnicos. Por fim, de- pendendo do resultado da criação, um ou mais desenhos de peças são apresentados ao cliente ou à direção da indústria. Após selecionada a peça a ser desenvolvida, a ilustração é ve- torizada (Figura 4 D) e a peça é fabricada, como a tiara finali- zada vista na Figura 4 E. esquematização das principais etapas e processos seguidos, para posterior aplicação em uma metodologia básica, torna-se necessário identificar os diferentes meios de atuação encontra- dos. Para auxiliar na distinção entre os perfis de processos cria- tivos e de desenvolvimento, foram realizadas entrevistas infor- mais com profissionais da área com diferentes históricos e ex- periências. Foram levantadas questões relacionadas com o tempo de carreira, envolvendo a área de projeto de joias, e quais são as principais etapas e modos de criação que o profis- sional costuma seguir. 3.1 Entrevistas com profissionais Nova- mente, na Figura 6 D, a entrevistada utiliza-se de um mock-up volumétrico em papel, para definição das geometrias e verifi- cação do conforto da peça a ser fabricada. Já na Figura 6 E F são apresentadas as etapas de fabricação do anel e, em G, a seleção de um material para o elemento decorativo. Após a união de todos os elementos na peça, a mesma passa para a etapa de finalização e acabamento (Figura 6 H). Por fim, o anel finalizado em latão e acrílico é visto na Figura 6 I. gura 6 B é apresentado a peça finalizada, em prata e pérolas, seguindo as definições de curvatura e movimento das formas, estipuladas no mock-up. Em outra criação, na Figura 6 C, pode- mos visualizar sketches preliminares, além de uma etapa de es- tudos de seleção de materiais que vão compor a peça. Nova- mente, na Figura 6 D, a entrevistada utiliza-se de um mock-up volumétrico em papel, para definição das geometrias e verifi- cação do conforto da peça a ser fabricada. Já na Figura 6 E F são apresentadas as etapas de fabricação do anel e, em G, a seleção de um material para o elemento decorativo. Após a união de todos os elementos na peça, a mesma passa para a etapa de finalização e acabamento (Figura 6 H). Por fim, o anel finalizado em latão e acrílico é visto na Figura 6 I. Figura 6 Exemplo do processo criativo e de desenvolvimento da entrevistada E3: (A) mock-ups volumétricos com materiais diversos e (B) anel em prata e pérolas finalizado; (C) sketches, seleção de materiais, (D) mock-up volumétrico em papel, (E) e (F) etapas de fabricação da peça, (G) seleção do material para elemento decorativo, (H) finalização da peça para acabamento e (I) anel em latão e acrílico. Fonte: IVI designs (2021) e entrevistada E3 (arquivo pessoal). Figura 6 Exemplo do processo criativo e de desenvolvimento da entrevistada E3: (A) mock-ups volumétricos com materiais diversos e (B) anel em prata e pérolas finalizado; (C) sketches, seleção de materiais, (D) mock-up volumétrico em papel, (E) e (F) etapas de fabricação da peça, (G) seleção do material para elemento decorativo, (H) finalização da peça para acabamento e (I) anel em latão e acrílico. Fonte: IVI designs (2021) e entrevistada E3 (arquivo pessoal). 3.1 Entrevistas com profissionais Entretanto, acres- cido a estas formas, a entrevistada relata que o conhecimento e estudo do público-alvo e/ou cliente é de grande importância como uma ferramenta para o entendimento das demandas, as- sim como o material que será utilizado e os respectivos proces- sos de fabricação. Em seguida, a profissional faz o uso de dese- nhos e esboços (Figura 4 B), observando e repassando ao papel a sua impressão do que foi visualizado. Após, são definidos os 64 Design & Tecnologia 24 (2022) senvolver joias que desempenhem mais de uma função, por isso fica atenta ao que as pessoas fazem e como elas se com- portam para, talvez, solucionar funções através de suas peças. Suas criações são raramente desenhadas no papel, mas mode- ladas fisicamente, através de mock-ups com materiais diversos, como massa de modelar, arames, papéis, ceras, entre outros, para a visualização da volumetria da peça. Segundo a entrevis- tada, a partir destes mock-ups a peça criada poderá ser fabri- cada futuramente, levando em consideração todos os aspectos testados e analisados. Na Figura 6 é apresentado um exemplo do processo criativo descrito pela entrevistada E3. Na Figura 6 A são vistos mock-ups volumétricos feitos com materiais diver- sos, para definir dimensões e ergonomia de um anel. Já na Fi- senvolver joias que desempenhem mais de uma função, por isso fica atenta ao que as pessoas fazem e como elas se com- portam para, talvez, solucionar funções através de suas peças. Suas criações são raramente desenhadas no papel, mas mode- ladas fisicamente, através de mock-ups com materiais diversos, como massa de modelar, arames, papéis, ceras, entre outros, para a visualização da volumetria da peça. Segundo a entrevis- tada, a partir destes mock-ups a peça criada poderá ser fabri- cada futuramente, levando em consideração todos os aspectos testados e analisados. Na Figura 6 é apresentado um exemplo do processo criativo descrito pela entrevistada E3. Na Figura 6 A são vistos mock-ups volumétricos feitos com materiais diver- sos, para definir dimensões e ergonomia de um anel. Já na Fi- gura 6 B é apresentado a peça finalizada, em prata e pérolas, seguindo as definições de curvatura e movimento das formas, estipuladas no mock-up. Em outra criação, na Figura 6 C, pode- mos visualizar sketches preliminares, além de uma etapa de es- tudos de seleção de materiais que vão compor a peça. 3.2 Características Identificadas Para compilar as informações levantadas com os entrevistados, com o objetivo de explorar as diferentes características que de- finem um profissional na área de joalheria, a Figura 8 apresenta estes atributos, relacionando-os qualitativamente com os per- fis dos entrevistados. Ressalta-se que tais atributos não estão apresentados em uma ordem específica, tampouco não neces- sariamente todos serão abordados em algum momento por um profissional da área. Uma das primeiras características identifi- cadas em todos entrevistados diz respeito ao seu modo de se obter a inspiração para suas criações (Figura 8 A). Como foi ob- servado, as inspirações podem vir tanto de requisitos pré-de- terminados, quanto de maneira aleatória. No primeiro caso, a inspiração é pré-determinada por requerimentos levantados pelo próprio profissional ou de um cliente (usuário final ou in- dústria), quando estes delimitam os objetivos da criação. Já com relação à aleatoriedade diz respeito às inúmeras formas de se obter fontes para criação, sejam abstratas ou não. O próximo atributo observado relaciona-se às fontes de informações buscadas pelo profissional (Figura 8 B), seja por meio de tendências ou de cliente. O primeiro caso trata de eventos especializados de transferência de conhecimentos de consumo e mercado, como workshops, ou de padrões de com- portamento, como desfiles de moda ou mídias populares, como cinema, séries, teledramaturgia, redes sociais, influencers e cri- adores de conteúdo. Ressalta-se que “tendência” corresponde a um termo utilizado no ramo joalheiro como um todo, repre- sentando um conjunto geral de informações transmitidas ou observadas no mercado; podendo ter outras definições mais aprofundadas em outras áreas, saindo do propósito deste ar- tigo. O segundo caso trata da busca de informações direta- mente com o cliente. Alguns o fazem ao longo da própria con- versa com o consumidor e, assim, definem os requisitos do pro- jeto. Desse modo, o profissional deve ficar atento em pequenos detalhes desse contato para poder atender ao máximo todas as especificações solicitadas. Muitas vezes, contudo, apesar do cli- ente passar seus desejos, alguns detalhes despercebidos preci- sam ser notados pelo profissional para poder levá-los ao longo do seu processo criativo. Figura 7 Processo criativo e exemplos de joias do entrevistado E6: em (A) é visualizada a ilustração apresentada ao cliente e anel sendo fabricado e (B) anel em ouro e gemas finalizado; (C) processo de fabricação e (D) ilustração e pingente em prata e ágata finalizado. Fonte: Dornelles Designer (2021). 3.2 Características Identificadas Além de separar as origens das fontes de inspiração e de informações, outra característica definida é sob que circunstân- cias é realizada a criação em si (Figura 8 C). Por exemplo, a cri- ação pode ser motivada por uma demanda, quando o cliente, seja o usuário final ou a indústria, realiza diretamente um pe- dido para o desenvolvimento de uma peça ou coleção. O outro caso ocorre de maneira espontânea, ou seja, quando o próprio profissional opta pelo desenvolvimento de sua criação, sem ser antecedido por um pedido comercial. É importante destacar, contudo, que no caso de criação espontânea, não necessaria- mente um projeto é desenvolvido aleatoriamente, para so- mente então comercializá-lo. Por exemplo, devido à observa- ção das tendências do momento, como comentado anterior- mente, o profissional pode antever-se e desenvolver criações visando a uma futura demanda comercial. Figura 7 Figura 7 Processo criativo e exemplos de joias do entrevistado E6: em (A) é visualizada a ilustração apresentada ao cliente e anel sendo fabricado e (B) anel em ouro e gemas finalizado; (C) processo de fabricação e (D) ilustração e pingente em prata e ágata finalizado. Fonte: Dornelles Designer (2021). E por fim, a última entrevistada (E7), está no ramo há 6 anos, criando suas peças sob encomenda e de forma persona- lizada. Esta profissional iniciou seu aprendizado durante a gra- duação, especializando-se através de cursos técnicos em esco- las de joalheria. Seu processo criativo inicia-se através de uma conversa com o cliente, no qual a designer identifica o perfil a ser criado. O processo tem como base o sentimento, na empa- tia com a história da pessoa, e na sensação do que a joia vai causar ao ser vista. Todo o conteúdo transmitido na conversa com o cliente é utilizado para inspiração, e nada é restringido. Como visto, diversos fatores influenciam o modo de atuar de um profissional no ramo da joalheria. Esses fatores dizem respeito tanto ao seu modo de criação e desenvolvimento de Outra característica que define os diferentes perfis de atu- ação de um profissional em joalheria está relacionada com o volume das peças produzidas (Figura 8 D). Esta produção pode ser conduzida em série, com um volume grande de unidades, ou ser de forma exclusiva, com a produção de uma única peça ou coleção – por exemplo, um anel, um par de brincos e um pingente. 3.1 Entrevistas com profissionais Após estes ajustes, a peça é fabricada com todas as observações feitas e preparada para entrega ao cliente (Fi- gura 7 B). Para os projetos de coleções próprias, o profissional procura estar fora das tendências mundiais, criando algo inova- dor, ousado, diferente do que está ocorrendo no momento. Algo com seu estilo, reforçando a sua marca. Normalmente a execução das peças, tanto para clientes específicos quanto para seu próprio acervo comercial, ocorre de forma artesanal, em seu ateliê, onde a definição do custo ocorre conforme um so- matório de fatores, tais como criação, mão de obra e material, respeitando a disponibilidade econômica. A Figura 7 C mostra uma das etapas do processo de fabricação de um colar de prata e ágata, realizada como coleção autoral, e na Figura 7 D é apre- sentada a peça finalizada, juntamente com sua ilustração do processo criativo inicial. Para o projeto de joias industriais, pri- meiramente é feita uma análise da empresa, estudando o seu portfólio e itens de produção, bem como seu potencial de pro- dução – sistema produtivo, tecnologias e mão de obra exis- tente, qualidade de acabamento, etc. – além do objetivo da empresa – mercado, marketing, investimento e logística. O pro- fissional relata, ainda, que procura estar sempre atualizado so- bre todos os tipos de arte e criações em geral, como na arqui- tetura, moda, além de obter conhecimentos sobre novas tec- nologias, inovações, formas criativas, entre outros. peças quanto às suas demandas. No subtópico seguinte são identificadas e listadas algumas das principais características que vão compor o perfil do profissional. 3.1 Entrevistas com profissionais A quarta entrevista, E4, foi desenvolvida com uma profis- sional com 17 anos de experiência, a qual primeiramente, de- fine um tema e pesquisa algumas imagens referentes para a construção de uma ambiência. Visualizando esta ambiência, desenhos são traçados e algumas delimitações executadas, como dimensões e ergonomia das peças a serem fabricadas. Já a entrevistada E5 trabalha neste ramo de forma autoral desde 2007, sob demanda de clientes. O início do processo criativo dá-se com uma conversa informal com o cliente, entendendo suas necessidades, e o que a peça irá representar para o mesmo. Após, todas as ideias são esboçadas através de dese- nhos, sendo apresentados para a escolha da joia. Com a defini- ção, é desenvolvido um desenho técnico, sendo repassado para um ourives. Este, por sua vez, fabrica a joia sob acompanha- mento da entrevistada para que a peça fique exatamente como o que foi projetado para o cliente. tendo realizado seu aprendizado e experiencia na Itália e no Brasil. Ele trabalha com a criação e fabricação de joias exclusi- vas e peças para a indústria. Para as joias exclusivas, tanto para clientes ou coleções próprias, o processo criativo é elaborado através de um projeto, por meio de desenhos feitos à mão ou no computador. A Figura 7 apresenta processos de desenvol- vimento criativo e fabricação do profissional. Para as joias ex- clusivas para clientes, o primeiro passo dá-se através de uma visita do mesmo ao seu ateliê. Neste momento, é efetuada uma consulta com a finalidade de captar todos os requisitos para elaborar o respectivo projeto da joia. Nesse diálogo, são nota- dos seus desejos, motivos, exigências e o que espera encontrar na peça. Procura-se entender também se a joia é para uma roupa em especial ou ocasião, um evento, etc. Após esse cená- rio, é apresentado um desenho ao cliente, para a aprovação ou eventuais modificações de projeto. Após as definições da peça, é apresentado o orçamento ao cliente para posterior fabrica- O profissional E6 trabalha no ramo da joalheria a 46 anos, 65 Design & Tecnologia 24 (2022) ção. Durante a execução da peça pode ocorrer a necessidade de provas para a verificação de medidas, formatos e ergono- mia, conforme visto no exemplo de um anel de ouro e gemas na Figura 7 A. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Por fim, um dos atributos mais importantes de serem le- vantados nas características encontradas é o modo de fabrica- ção que os profissionais utilizam (Figura 8 F). Neste atributo, encontra-se a fabricação industrial, na qual maquinários e sis- temas automatizados são preferidos como, por exemplo, o sis- tema CAM, ou Computer-Aided Manufacturing (manufatura auxiliada por computador). Este inclui manufatura aditiva (po- pularmente chamada de impressão 3D ou, especificamente, es- tereolitografia) e CNC, ou Computer Numeric Control (controle numérico computadorizado), incluindo usinagem, gravação e corte a laser e à jato d’água, além de outros, como câmaras de vácuo, centrífugas, fornos, equipamentos para fundições e in- jeções, maquinário para correntaria, eletroformação, etc. Já a fabricação artesanal concentra-se em técnicas de ourivesaria, principalmente com o uso de ferramentas manuais, desde ali- cates e limas até maçaricos, e alguns equipamentos mecaniza- dos mais simples, como laminadores, politrizes, entre outros. Baseando-se nos relatos do meio de atuação e trabalho dos en- trevistados, juntamente com as características vistas na evolu- ção do ramo joalheiro até a contemporaneidade, em termos que envolvam materiais, processos e aspectos socioculturais, é possível esquematizar uma metodologia mais específica para o desenvolvimento de joias. Além disso, destaca-se a vasta expe- riência docente e profissional no ramo de Joalheria de um dos autores deste artigo, a qual contribuiu para embasar e orientar todas as informações levantadas, de modo a sintetizar os prin- cipais pontos pertinentes para uma metodologia específica. Desse modo, a Figura 9 apresenta as etapas gerais contempla- das na metodologia proposta. Ressalta-se que a proposta diz respeito a uma série de passos voltados para o ensino da prá- tica profissional em joalheria, de modo a poder ser utilizada desde em cursos de graduação, especialização e aperfeiçoa- mento. Devido à natureza objetiva e voltada a cenários de situ- ações reais de atuação, esta metodologia visa servir tanto para alunos quanto para profissionais envolvidos na área. Destaca- se que apesar da proposição ser apresentada de maneira linear, para facilitar a compreensão geral, o processo em si frequente- mente prevê a realização de iterações, as quais são comuns em diferentes práticas do Design. Como pode ser visto, os profissionais do ramo de joalheria podem possuir uma grande variação de perfis conforme suas características de trabalho. 3.2 Características Identificadas É importante destacar que, mesmo profissionais au- tônomos podem realizar produções em série, por meio de ter- ceirização do serviço. Do mesmo modo, as indústrias também 66 Design & Tecnologia 24 (2022) podem produzir peças exclusivas, tanto como uma forma de destaque para eventos ou marketing, como também em vir- tude de uma raridade de materiais, como gemas únicas. descontinuados RhinoGold® e Matrix®), Panther3D® e Coun- terSketch®. Estes plugins combinam funções adicionais ao sof- tware base, como modelos 3D já prontos (como gemas), uma biblioteca de materiais específica, além de serem projetados para facilitar o processo de modelagem de joias. Já o modo ana- lógico é baseado principalmente por meio de ilustrações pinta- das à mão, as quais servem diretamente como referência para manufatura da joia. Nesta etapa, independentemente de ser seguido um processo digital ou analógico, todas as principais dimensões e aspectos ergonômicos e estéticos já são definidos para a representação da peça ser mais realista e facilitar as de- mais etapas. É importante salientar que os processos não são conflitantes, de modo que muitos profissionais da área optam por mesclar ambas as abordagens, conforme a complexidade, cliente e processo produtivo. Com relação ao modo pelo qual o projeto é concebido, ba- sicamente é possível separá-lo em dois grandes grupos: digital e analógico (Figura 8 E). O primeiro utiliza-se de softwares de ilustração 2D vetorial e modelagem 3D (direta ou paramétrica) para delinear as formas das peças a serem posteriormente fa- bricadas. As ilustrações em softwares 2D, como o Adobe® Illus- trator® e CorelDraw®, são realizadas com uma preocupação com a fidedignidade da representação dos materiais seleciona- dos nos projetos. Com relação às modelagens 3D, cabe desta- car que um software bastante utilizado em diversos ramos do design, o Rhinoceros® 3D, possui, inclusive, alguns plugins es- pecíficos para design de joias, como o MatrixGold® (união dos Figura 8 Diferentes características encontradas nos perfis dos profissionais de joalheria entrevistados (E1-E7). Fonte: Autores (2022). 8 Diferentes características encontradas nos perfis dos profissionais de joalheria entrevistados (E1-E7). Fonte: Autores (2022). 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Além disso, a peça que se deseja criar e fabricar também é um ponto determinante para esco- lher quais atributos e modos são mais adequados para se che- gar ao resultado. Para fins didáticos, portanto, torna-se impor- tante transmitir ao aluno uma visão geral de todas as possibili- dades existentes no desenvolvimento de uma joia, de modo que ele possa ter uma base para escolher como poderá ser o seu perfil de atuação. Na primeira etapa da figura, encontra-se o profissional em duas situações gerais, as quais irão definir os próximos passos a serem seguidos. No primeiro caso, a atuação do profissional parte de uma solicitação de um projeto, podendo ser proveni- 67 Design & Tecnologia 24 (2022) ente desde uma indústria, uma empresa ou diretamente uma pessoa física. Nessa situação, a solicitação do projeto poderá ocorrer de duas maneiras distintas, sendo a primeira onde o cli- ente informará suas necessidades, desejos e/ou restrições, e a segunda em que o profissional irá atuar de maneira livre, sem particularidades ou requisitos iniciais provenientes do cliente, isto é, recebendo uma liberdade de criação. No segundo caso, o profissional atuaria de maneira autoral, ou seja, espontânea, sem haver uma demanda prévia por algum cliente ou objetivo específico. Nesta situação, o projeto também será baseado em duas maneiras, sendo a primeira em tendências de mercado e a segunda poderá ser executada de maneira livre. No caso de tendências, como visto anteriormente, trata-se de uma obser- vação preliminar do que se encontra em alta no mercado, com relação a mídias populares, personalidades, aspectos culturais e de comportamento, entre outros; ou seja, aquilo que poderá levar a um maior interesse de um futuro consumidor/cliente. Já a situação autoral com atuação livre enquadra-se no mesmo modo que do projeto por solicitação, em que nenhuma restri- ção inicial é aplicada. Neste caso, é importante destacar que o projeto parte do profissional, contudo sem necessariamente possuir o objetivo de comercialização, como no caso de tanto construir um portfólio, quanto de participar de concursos de joias, por exemplo. No ramo joalheiro, muitos concursos ocor- rem de maneira livre, sem definições com relação ao processo criativo, aos temas e aos materiais e processos utilizados, não havendo, necessariamente, um briefing inicial, aproximando-se mais de criações artísticas. A partir dessa definição inicial, é possível ao profissional, definir o seu próprio problema de pro- jeto a ser solucionado nas demais etapas a serem seguidas. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Apesar disso, contudo, de- vido à sua natural importância estética, na joalheria, diferente- mente do design de um produto, os requisitos e restrições de projeto não são necessariamente fixos e absolutos, o que pode tender a deixá-la um pouco mais próxima da arte. Nesse sen- tido, no design de joias os requisitos podem ser mais bem des- critos como tópicos específicos que resumem as informações mais relevantes e essenciais das etapas 1 e 2, ou quando pos- suem algumas características consideradas imperativas para o projeto. Por exemplo, há casos em que a peça a ser produzida precisa cumprir uma exigência de projeto, como auxiliar um usuário com limitações de movimento a colocar um brinco; conter um termoplástico como um material decorativo de des- taque para remeter a uma empresa do setor; ou como de uma joia ser fabricada com um material seguro para contato com alimentos para poder se transformar em um utensílio de cozi- nha. Tal como na definição do conceito, é imperativo conside- rar questões de sustentabilidade, na definição dos requisitos de projeto precisa-se sempre considerar aspectos de ergonomia, para segurança e conforto do usuário. Através da realização dos esboços preliminares (Figura 10 C), algumas alternativas podem ser escolhidas e pré-refinadas, levando em consideração questões de dimensões, ergonomia, elementos de junção, materiais e processos. Para auxiliar o pro- cesso de escolha dessas alternativas, pode-se fazer uso de mock-ups físicos, utilizando-se de materiais de baixo custo e fá- cil modelagem, como papelão, arame, massa de modelar, etc., com o objetivo de se ter um melhor entendimento espacial da peça a ser fabricada. Além disso, é possível incluir no processo de seleção de alternativas métodos de triagem mais tradicio- nais do design, como Pugh, matriz de Mudge, entre outros. Por fim, torna-se cada vez mais essencial a realização de mock-ups virtuais, com a utilização de softwares de modelagem 3D, como visto na Figura 10 D, com a peça planificada vetorizada (deta- lhe D1), juntamente com um modelo volumétrico (detalhe D2). A partir da modelagem 3D em software, uma etapa seguinte é a elaboração de imagens de renderizações foto-realistas do projeto, como exemplificado na Figura 10 E F. Esta etapa é im- portante tanto para um melhor entendimento final da peça, com todos seus materiais aplicados e corretamente simulados, quanto para apresentação e aprovação do cliente, ou mesmo para construção de portifólio. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA A outra fase, de fontes de inspiração, trata da obten- ção de recursos que auxiliem o profissional no desenvolvi- mento criativo da peça. Com o objetivo de exemplificar a metodologia proposta a partir desta etapa, a Figura 10 apresenta o processo de criação e desenvolvimento de um bracelete, realizado pelos autores. Ressalta-se que, nesta peça demonstrativa, pressupõe-se um cenário de criação autoral, com atuação livre, no qual a proble- mática de projeto consiste na elaboração de uma peça que seja representativa de elementos da natureza. Desse modo, a partir de uma pesquisa especializada nesta temática, definiu-se que o conceito do projeto seria o contraste de água e fogo, e os re- quisitos do projeto consistem, resumidamente, em adaptar este tema aos materiais e às formas da joia. Continuando a des- crição das etapas da metodologia, as fontes de inspiração po- dem ser tanto construídas sob a forma de painéis de referência temáticos, contendo imagens sobre o tema do projeto, como exemplificado na Figura 10 A, ou através de elementos físicos diversos. Munido destas informações, o profissional parte efe- tivamente para o processo criativo com a geração de alternati- vas. Durante a criação, deve-se ter em mente tanto os resulta- dos obtidos com os experimentos quanto as fontes de inspira- ção geradas. O processo pode ser realizado da forma macro, onde o profissional visualiza a sua fonte e a transpassa para o papel através de esboços ou, por meio de outra técnica, muito utilizada no design de joias, conhecida por ‘olho mágico’ (Fi- gura 10 B), onde se direciona o olhar sobre o painel de referên- cia através de um orifício vazado (detalhe B1) e se obtêm uma visualização mais específica de regiões delimitadas, destacando formas, cores e texturas isoladas e até inesperadas. É possível destacar que o processo criativo na joalheria muitas vezes é se- guido de maneira pessoal, de acordo com o seu fluxo de criação individual. Desse modo, esse processo dificilmente pode ser considerado engessado e linear, permitindo ao profissional buscar, a partir de algumas técnicas estabelecidas, o seu modo preferido de desenvolvimento. A última etapa é a responsável, essencialmente, pela ma- terialização do projeto, em que o conceito estipulado será transformado em uma peça. O processo inicia-se com a defini- ção dos requisitos de projeto, utilizando-se como base as infor- mações levantadas anteriormente. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Figura 9 Esquema geral das etapas da metodologia proposta para o ensino de Design de Joias. Fonte: Autores (2022). Figura 9 Esquema geral das etapas da metodologia proposta para o ensino de Design de Joias. Fonte: Autores (2022). Com a definição do problema e os objetivos do projeto, tanto por solicitação ou de forma autoral, parte-se para a se- gunda etapa. Nesta são realizadas pesquisas para auxiliar o pro- fissional a se orientar nos passos seguintes de desenvolvi- mento. Por sua vez, a pesquisa poderá ser dividida entre ser especializada ou generalizada, dependendo da problemática de projeto. No primeiro caso, trata-se de um levantamento infor- macional focado em algum aspecto pré-definido anterior- 68 Design & Tecnologia 24 (2022) mente, como, por exemplo, uma ocasião (casamentos, aniver- sários, celebrações empresariais, nascimentos, entre outros momentos comemorativos), uma temática (motivos infantis, religiosos, estilos artísticos, gêneros musicais, aspectos históri- cos e culturais de regiões e países, etc.), ou aspectos funcionais (acessibilidade, enfermidades, multifuncionalidades, etc.). Já na pesquisa generalizada são buscadas informações diversas e mais abrangentes, onde o profissional trabalha com escolhas próprias, definindo o seu tema de pesquisa, podendo ser, por exemplo, aspectos de interesse da sociedade, tópicos de ten- dência, ou questões relevantes como um todo. Há ainda, para ambos os tipos de investigação, a importância de se realizar também uma pesquisa de similares, tanto para se ter conheci- mento do que tem sido desenvolvido no atual momento quanto para investigar novas opções de materiais e processos que possam ser adicionados ao projeto. Destaca-se que, no ramo joalheiro, a pesquisa de similares deve ser realizada com cautela, pois estas informações não devem interferir no ato do processo criativo, em virtude do risco de plágios e de contami- nação durante a geração de alternativas. Com a realização das pesquisas, é possível o estabelecimento de um conceito que irá guiar o desenvolvimento do projeto. Ressaltando as caracterís- ticas vistas anteriormente sobre a joalheria na contemporanei- dade, é fundamental que o conceito abranja também uma pre- ocupação com aspectos relacionados à sustentabilidade, tanto em termos de materiais e processos considerados ambiental- mente amigáveis, de origem socialmente justa, além, claro, de o projeto ser economicamente viável. joalheria contemporânea, esta etapa acaba por se tornar cada vez mais essencial, visto a variedade de materiais, técnicas e tecnologias que são incluídas no desenvolvimento de peças ino- vadoras. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Ainda, dependendo do tipo de projeto a ser executado, muitos profissionais têm também na fase de modelagem 3D a possibilidade de comercializar seu projeto a partir desse ponto. Contudo, salienta-se que este pro- cesso precisa ser realizado com um alto nível de detalhes no que tange aspectos técnicos como espessuras, ligas, cravações (dimensionamento de garras e orifícios para gemas), encaixes Após a definição dos requisitos do projeto, tem-se a reali- zação de duas fases importantes: experimentação e delimita- ção de fontes de inspiração. Quando necessário, conforme os parâmetros do projeto, a primeira consiste em um conjunto de testes a serem executados de modo que possa auxiliar na esco- lha de materiais, ferramentas, processos de fabricação e acaba- mento. Como exemplo, é possível citar a padronização de velo- cidade e potência de corte e gravação a laser em gemas, cou- ros, madeiras, tecidos; obtenção e comparação de ligas metáli- cas; tratamentos térmicos e de superfície; fabricação de mol- des para testes de fundição de peças poliméricas ou cerâmicas; testes de impregnação de resinas e fixação de tingimentos; en- tre outros. Ressalta-se que, na joalheria tradicional, estes expe- rimentos não são usuais, visto que a maioria dos materiais e processos empregados já são bem estabelecidos. Enquanto na 69 Design & Tecnologia 24 (2022) cidade de fabricação de peças difíceis de serem produzidas ma- nualmente. Neste tipo de fabricação encontram-se equipamen- tos como fornos de fundição, centrífugas, injetoras, além de uma gama de maquinário por controle numérico computadori- zado, tais como usinagem, gravação e corte a laser, estereoli- tografia, etc. É importante ressaltar que o profissional não ne- cessariamente precisa optar por um ou outro processo de fa- bricação apenas, mas mesclá-los para o desenvolvimento das peças conforme sua necessidade. Outro ponto a destacar é que, geralmente, o processo de fabricação industrial pode ser terceirizado, serviço o qual muitas indústrias proporcionam a profissionais autorais ou atuantes em empresas de pequeno porte. Há ainda a possibilidade de uma alternância entre as eta- pas de fabricação artesanal e industrial com, por exemplo, após uma peça sair de uma fundição por cera perdida (processo in- dustrial), a mesma parte para um setor de ourives, passando para um acabamento com limas, lixas e politriz (processo arte- sanal). De modo geral, mesmo que possam ser divididos entre duas grandes áreas de fabricação, os processos artesanal e in- dustrial frequentemente são combinados de forma natural num fluxo de trabalho. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Para a fabricação da peça da Figura 10, por exemplo, utilizou-se a união de processos oriundos do modo industrial, com corte da chapa por jato d’água e galvano- plastia, e artesanal, com modelagem com aquecimento por ma- çarico (Figura 10 G), polimento, cravação e outros. e elementos de junções, acabamentos, e todos os demais parâ- metros que possibilitem sua manufatura. Nessa parte também é importante que o arquivo de modelagem esteja pronto para ser aplicado em possíveis equipamentos de fabricação, como estereolitografia, usinagem em cera, ou gravação e corte a la- ser ou por jato d’água. Após a modelagem e verificação de aspectos formais com os mock-ups físicos e/ou virtuais, parte-se para a última etapa da concepção, o processo de fabricação. Por sua vez, como visto, esta etapa pode ser dividida entre processos de forma ar- tesanal e industrial. Dependendo do projeto, a peça pode ser produzida de forma artesanal ou industrial apenas, ou com uma mescla dessas. Na fabricação artesanal predomina-se o uso de técnicas de ourivesaria com a utilização de ferramentas manu- ais (desde alicates, limas, serras, martelos, lixas, maçaricos de oxiacetileno, etc.) e automatizadas com controle manual (poli- triz, laminadores elétricos, motor de suspensão, etc.). Mais es- pecificamente, na joalheria contemporânea, com o emprego de diferentes materiais e técnicas, o profissional encontra-se tra- balhando mais com fabricação artesanal, principalmente com a experimentação, testes e manipulação, o que já pode levá-lo ao resultado final da joia. Já na fabricação industrial, encontram- se, em sua predominância, equipamentos de grande porte com, essencialmente, capacidade para reprodução em série, como maquinário para produção de correntes, ou com a capa- Figura 10 Exemplificação da Etapa 3 da metodologia proposta, através do desenvolvimento de um bracelete: (A) painel de referência temático; (B) técnica do olho mágico, com observação do painel através de um orifício (detalhe B1); (C) esboços preliminares; (D) peça planificada vetorizada (detalhe D1) e modelada em software 3D (detalhe D2); (E) e (F) renderizações com simulação de materiais; (G) processo de fabricação; (H) e (I) peça finalizada. Fonte: Autores (2022). 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Figura 10 Exemplificação da Etapa 3 da metodologia proposta, através do desenvolvimento de um bracelete: (A) painel de referência temático; (B) técnica do olho mágico, com observação do painel através de um orifício (detalhe B1); (C) esboços preliminares; (D) peça planificada vetorizada (detalhe D1) e modelada em software 3D (detalhe D2); (E) e (F) renderizações com simulação de materiais; (G) processo de fabricação; (H) e (I) peça finalizada. Fonte: Autores (2022). averiguação de aspectos tanto ergonômicos (leveza, dimensio- namento, conforto, etc.) como estéticos. Se necessário, ajustes adicionais de acabamento ou pequenas modificações e/ou adaptações podem ser realizadas. A última etapa do desenvolvimento da joia é a de valida- ção, na qual o resultado da peça precisa ser tanto comparado com os parâmetros e requisitos de projeto originais quanto ser aprovado por um cliente ou potencial usuário. No meio acadê- mico, nesta parte são interessantes as simulações de uso, para Outra parte importante para a finalização do projeto, 70 Design & Tecnologia 24 (2022) tima etapa o processo de criação e fabricação de um bracelete. tima etapa o processo de criação e fabricação de um bracelete. Com a presente pesquisa, pretendeu-se disponibilizar uma metodologia-base que possa ser aplicada ao ensino de de- sign de joias em cursos de graduação, pós-graduação ou técni- cos de aperfeiçoamento, para uso desde em disciplinas especí- ficas até em projetos e trabalhos de conclusão. Essencialmente, objetivou-se demonstrar de maneira direta e objetiva os princi- pais modos de atuação que o estudante possa seguir também em sua futura carreira profissional. Por fim, destaca-se que tendo uma metodologia para se basear, o aluno estará apto, também, a ajustá-la conforme suas necessidades e de acordo com o seu fluxo de trabalho, uma vez que o formato desta pro- posição é, justamente, ser flexível e adaptável. tanto para o meio acadêmico quanto profissional, é o registro fotográfico da joia, como exemplificado na Figura 10 H e I. Para isso, devem-se ser observados alguns cuidados com a ambien- tação durante a demonstração. Usualmente, os registros foto- gráficos são realizados com um fundo branco ou preto, propor- cionando um maior destaque à peça. Contudo, se a fonte de inspiração ou o conceito do projeto for algo mais específico, como um elemento da natureza, por exemplo, as fotos podem ser compostas com a presença deste contexto ao fundo, ainda que cuidando para que o ponto focal mantenha-se na joia. REFERÊNCIAS 1. AMARAL, A. M. DO; PALOMBINI, F. L.; CIDADE, M. K. Utilização e valorização do mármore como gema em uma coleção de joias. In: Avanços técnico-científicos no setor de gemas, joias e mineração. Porto Alegre: IGEO/UFRGS, 2018. p. 50–64. Apesar desta metodologia não ter sido formalmente es- truturada e publicada anteriormente, sua utilização prática de maneira evidentemente simplificada tem sido empregada ao longo de anos no ensino de Design de Joias. Isso permite validar a sua base geral quanto ao preparo dos alunos para o mercado profissional. Para esta pesquisa, buscou-se aprimorar os conhe- cimentos dos autores com o objetivo de criar uma metodologia baseada na compilação de maiores informações obtidas pelo referencial teórico e, essencialmente, pelas entrevistas realiza- das, de modo a facilitar seu entendimento pelos alunos. Por exemplo, com este trabalho, torna-se mais fácil de demonstrar como um profissional em joalheria pode seguir diferentes for- mas de atuação e criação. 2. ASHBY, M. F.; JOHNSON, K. Materiais e design : arte e ciência na seleção de materiais em projeto de produto. 2a ed. Rio de Janeiro: CAMPUS, 2011. 3. BA’AI, N. M.; HASHIM, H. Z. Waste to Wealth: The Innovation of Areca catechu as a Biomaterial in Esthetics Seed-Based Jewelry. In: Proceedings of the International Symposium on Research of Arts, Design and Humanities (ISRADH 2014). Singapore: Springer Singapore, 2015. p. 373–381. DOI: https://doi.org/10.1007/978-981-287-530- 3_38 AGRADECIMENTOS Ao Conselho Nacional de Desenvolvimento Científico e Tecno- lógico pelo apoio ao Projeto Universal MCT/CNPq – 028/2018. Os autores agradecem a disponibilidade e consentimento dos relatos e imagens dos entrevistados. 4. PROPOSIÇÃO DE METODOLOGIA PARA A JOALHERIA Por fim, com a validação e a aprovação dos objetivos do projeto, tem-se a obtenção da peça final. tima etapa o processo de criação e fabricação de um bracelete. Com a presente pesquisa, pretendeu-se disponibilizar uma metodologia-base que possa ser aplicada ao ensino de de- sign de joias em cursos de graduação, pós-graduação ou técni- cos de aperfeiçoamento, para uso desde em disciplinas especí- ficas até em projetos e trabalhos de conclusão. Essencialmente, objetivou-se demonstrar de maneira direta e objetiva os princi- pais modos de atuação que o estudante possa seguir também em sua futura carreira profissional. Por fim, destaca-se que tendo uma metodologia para se basear, o aluno estará apto, também, a ajustá-la conforme suas necessidades e de acordo com o seu fluxo de trabalho, uma vez que o formato desta pro- posição é, justamente, ser flexível e adaptável. De maneira geral, como observado no decorrer de práti- cas docentes no design de joias, a ausência de uma metodolo- gia específica voltada para a joalheria é uma carência encon- trada frequentemente na sala de aula. Assim, a falta de um guia geral, ou um conjunto de diretrizes básicas e práticas para apre- sentar a alunos, com exemplos e relatos de profissionais, é o grande motivador desta proposição. Considerando os diferen- tes meios de atuação profissional, seja autônoma ou industrial, é de suma relevância levar ao conhecimento do discente que sua futura atuação poderá seguir os vários ramos mostrados pelos entrevistados. 5. CONSIDERAÇÕES FINAIS 4. BALAGUERA, Y. L. S. La influencia de los materiales en el significado de la joya. Cuadernos del Centro de Estudios en Diseño y Comunicación. Ensayos, n. 46, p. 115–153, 2013. O desenvolvimento da joalheria percorreu diferentes mudan- ças até a contemporaneidade, passando por períodos históri- cos que influenciavam todas as etapas de materialização. Não apenas com a presença e influência de materiais e processos de fabricação característicos de cada tempo, o modo de pensar, conceituar, e definir questões de cada projeto vem se adap- tando a cada nova realidade. Atualmente, na chamada joalheria contemporânea, existe uma forte quebra de paradigmas relaci- onados à adição de novas tecnologias, inclusão de múltiplos ti- pos de materiais, além de uma já obrigatória inclinação à sus- tentabilidade, onde a preocupação com questões ambientais, sociais e econômicas são cada vez mais exigidas pelo cliente. 5. BAXTER, M. Projeto de produto : guia prático para o design de novos produtos. 3a ed. São Paulo: Blücher, 2011. 6. BAYSAL, E. L. Personal Ornaments in Prehistory : An Exploration of Body Augmentation from the Palaeolithic to the Early Bronze Age. Oxford: Oxbow Books, 2019. 7. BLAYA, L. R. G.; CAMARGO, K. R.; PALOMBINI, F. L.; GARCIA, W. J. DA S.; CIDADE, M. K. Desenvolvimento de joia a partir da reciclagem de garrafas de vidros. Blucher Design Proceedings. Anais... São Paulo: Editora Blucher, mar. 2019 O ramo da joalheria contempla diversos aspectos em torno de seu universo, e o profissional da área precisa ter co- nhecimentos gerais sobre todas as questões pertinentes envol- vidas. Apesar disso, nota-se uma carência de uma metodologia específica da área, aliando uma abordagem projetual do design com a joalheria. Nesse sentido, este artigo apresentou uma proposta de metodologia de ensino de design de joias voltada a diferentes perfis do mercado joalheiro. Para isso, profissionais com variados tipos de atuação foram entrevistados, levando à definição de diferentes características para auxiliar na elabora- ção da proposta. A metodologia foi estruturada com a separa- ção de 3 etapas principais, as quais abordam, na primeira, do tipo de atuação até a definição do problema, na etapa 2, da pesquisa até a elaboração do conceito e, na etapa 3, dos requi- sitos de projeto, o processo criativo, a fabricação de mock-ups, até a manufatura, a validação e a obtenção da peça final. 5. CONSIDERAÇÕES FINAIS Foi utilizado como exemplo ilustrativo dos passos práticos da úl- O ramo da joalheria contempla diversos aspectos em torno de seu universo, e o profissional da área precisa ter co- nhecimentos gerais sobre todas as questões pertinentes envol- vidas. Apesar disso, nota-se uma carência de uma metodologia específica da área, aliando uma abordagem projetual do design com a joalheria. Nesse sentido, este artigo apresentou uma proposta de metodologia de ensino de design de joias voltada a diferentes perfis do mercado joalheiro. Para isso, profissionais com variados tipos de atuação foram entrevistados, levando à definição de diferentes características para auxiliar na elabora- ção da proposta. A metodologia foi estruturada com a separa- ção de 3 etapas principais, as quais abordam, na primeira, do tipo de atuação até a definição do problema, na etapa 2, da pesquisa até a elaboração do conceito e, na etapa 3, dos requi- sitos de projeto, o processo criativo, a fabricação de mock-ups, até a manufatura, a validação e a obtenção da peça final. Foi utilizado como exemplo ilustrativo dos passos práticos da úl- 8. BÜRDEK, B. E. Design : história, teoria e prática do design de produtos. 2. ed. São Paulo: Edgard Blücher, 2010. 9. CADORE, E. M. Joalheria contemporânea e sustentabilidade : recuperação de metais e lapidação de vidros a partir de resíduos. 2015. 118 f. Trabalho de Conclusão de Curso - Universidade Federal do Rio Grande do Sul, Porto Alegre, 2015. 10. CAMARGO, K. R. Utilização da Música, Emoções e Tecnologia Computacional no Desenvolvimento de Joias Contemporâneas. 2018. 131 f. Trabalho de Conclusão de Curso (Graduação) - Universidade Federal de Santa Maria, Santa Maria, 2018. 71 Design & Tecnologia 24 (2022) 24. FAGGIANI, K. O poder do design : da ostentação à emoção. Brasília: Thesaurus, 2006. 11. CAMARGO, K. R.; BLAYA, L. R. G.; GARCIA, W. J. DA S.; CIDADE, M. K. Joalheria Contemporânea: aplicação de tecnologia laser CO2 em borracha EPDM. Blucher Design Proceedings. Anais... São Paulo: Editora Blucher, mar. 2019 25. GOLA, E. A joia : história e design. 2a ed. São Paulo: Editora Senac São Paulo, 2013. 26. GONG, B.; YUAN, R. Study of Contemporary Jewelry Design Emotional Expression Skills. Journal of Arts and Humanities, v. 6, n. 2, p. 57, 28 fev. 2017. DOI: https://doi.org/10.18533/journal.v6i2.1113 12. CAMPOS, A. P. DE. Pensando a joalheria contemporânea com Deleuze e Guattari. Revista Trama Interdisciplinar, v. 2, n. 2, p. 167–179, maio 2011. 13. 5. CONSIDERAÇÕES FINAIS CAPPELLIERI, A.; TENUTA, L.; TESTA, S. Jewellery Between Product and Experience: Luxury in the Twenty-First Century. In: GARDETTI, M. Á.; COSTE-MANIÈRE, I. (Eds.). Sustainable Luxury and Craftsmanship. Singapore: Springer, 2020. p. 1–23. DOI: https://doi.org/10.1007/978-981-15-3769-1_1 27. GRIEBLER. Catálogo 7 Ervas. Disponível em: <http://www.joiasgriebler.com.br/images/catalogos/erva s.pdf>. Acesso em: 5 jun. 2021. 28. GRIGOLO, M. DA S.; CIDADE, M. K. Desenvolvimento de joias reutilizando ardósia de origem residual. Anais do 7o Fórum Internacioanl Ecoinovar. Anais... Santa Maria: 2018 14. CARDOSO, R. Uma introdução à história do design. São Paulo: Edgard Blücher, 2008. 29. GUERRA, A. L.; CIDADE, M. K. Design e Joalheria: desenvolvimento de uma joia com óleos essenciais para o alívio de sintomas alérgicos. Design e Tecnologia, v. 9, n. 18, p. 115–130, 30 jun. 2019. DOI: https://doi.org/10.23972/det2019iss18pp115-130 15. CIDADE, M. K.; PALOMBINI, F. L.; LIMA, N. F. F.; DUARTE, L. DA C. Método para determinação de parâmetros de gravação e corte a laser CO2 com aplicação na joalheria contemporânea. Design e Tecnologia, v. 12, p. 54–64, 2016. DOI: https://doi.org/10.23972/det2016iss12pp54- 64 30. HESKETT, J. Design. São Paulo: Ática, 2008. 31. HESSE, R. W. Jewelrymaking through history : an encyclopedia. Westport, Connecticut, USA: Greenwood Press, 2007. 16. CIDADE, M. K.; PALOMBINI, F. L.; DUARTE, L. DA C.; PACIORNIK, S. Investigation of the thermal microstructural effects of CO 2 laser engraving on agate via X-ray microtomography. Optics & Laser Technology, v. 104, p. 56–64, ago. 2018. DOI: https://doi.org/10.1016/j.optlastec.2018.02.002 32. IVI DESIGNS. IVI designs. Disponível em: <https://www.instagram.com/ivi.designs/>. Acesso em: 5 jun. 2021. 33. KOULIDOU, N. Why Should Jewellers care about the Digital? Journal of Jewellery Research, v. 1, p. 17–33, 2018. 17. CIDADE, M. K.; PALOMBINI, F. L.; PALHANO, A. P.; MELCHIORS, A. Experimental Study for the Valorization of Polymeric Coffee Capsules Waste by Mechanical Recycling and Application on Contemporary Jewelry Design. In: MUTHU, S. S. (Ed.). Sustainable Packaging. Singapore: Springer-Nature, 2021. DOI: https://doi.org/10.1007/978- 981-16-4609-6_4 34. LESKO, J. Design industrial : guia de materiais e fabricação. 2a ed. São Paulo: Blucher, 2012. 35. LÖBACH, B. Design industrial : bases para a configuração dos produtos industriais. São Paulo: Edgard Blücher, 2001. 36. MAGTAZ, M. Joalheria Brasileira : do descobrimento ao século XX. São Paulo: Mariana Magtaz, 2008. 18. CIDADE, M. K.; PALOMBINI, F. L.; KINDLEIN JÚNIOR, W. Biônica como processo criativo : microestrutura do bambu como metáfora gráfica no design de joias contemporâneas. Revista Educação Gráfica, v. 19, n. 1, p. 91–103, 2015. 37. 5. CONSIDERAÇÕES FINAIS MELCHIORS, A.; PALHANO, A. P.; CIDADE, M. K. ESTUDO DE RECICLABILIDADE E REUTILIZAÇÃO DE CÁPSULAS POLIMÉRICAS DE CAFÉ. MIX Sustentável, v. 6, n. 4, p. 93– 104, 7 ago. 2020. DOI: https://doi.org/10.29183/2447- 3073.MIX2020.v6.n4.93-104 19. CINTRA, L. S. K.; CIDADE, M. K. REUTILIZAÇÃO E RECICLAGEM: DESENVOLVIMENTO DE JOIA COM COMPONENTES ORIUNDOS DE RESÍDUOS ELETROELETRÔNICOS. MIX Sustentável, v. 6, n. 3, p. 27– 36, 18 jun. 2020. DOI: https://doi.org/10.29183/2447- 3073.MIX2020.v6.n3.27-36 38. MILEWSKI, J. O. Additive Manufacturing Metal, the Art of the Possible. In: Springer Series in Materials Science. [s.l.] Springer Verlag, 2017. v. 258p. 7–33. DOI: https://doi.org/10.1007/978-3-319-58205-4_2 20. CORBETTA, G. Joalheria de arte. Porto Alegre: AGE, 2007. 39. MILLER, J. Jewel : a celebration of earth’s treasures. London: Dorling Kindersley Ltd., 2016. 21. DE ABREU E LIMA, C. E.; LEBRÓN, R.; DE SOUZA, A. J.; FERREIRA, N. F.; NEIS, P. D. Study of influence of traverse speed and abrasive mass flowrate in abrasive water jet machining of gemstones. The International Journal of Advanced Manufacturing Technology, v. 83, n. 1–4, p. 77– 87, 19 mar. 2016. DOI: https://doi.org/10.1007/s00170- 015-7529-9 40. MORENO, S. D. N. DE S.; CIDADE, M. K. SUSTENTABILIDADE E JOALHERIA: RECICLAGEM DE EPS PARA APLICAÇÃO EM JOIAS. MIX Sustentável, v. 5, n. 4, p. 27–39, 14 nov. 2019. DOI: https://doi.org/10.29183/2447- 3073.MIX2019.v5.n4.27-39 41. MOSTARDEIRO, M. E. S.; ODERICH, A. L.; CIDADE, M. K. DESENVOLVIMENTO DE JOIA MEDIANTE A RECICLAGEM DE VIDROS E PROCESSOS DE FABRICAÇÃO MULTIDISCIPLINARES. Plural Design, v. 2, n. 1, p. 69–79, 29 jan. 2019. DOI: https://doi.org/10.21726/pl.v2i1.85 22. DORNELLES DESIGNER. Dornelles Designer. Disponível em: <https://www.instagram.com/dornellesdesigner/>. Acesso em: 5 jun. 2021. 23. ETYMOLOGY DICTIONARY. Jewel. Disponível em: <http://www.etymonline.com/index.php?term=jewel>. Acesso em: 6 mar. 2017. 42. MUNARI, B. Das coisas nascem as coisas. 2. ed ed. São Paulo: Martins Fontes, 2008. 72 Design & Tecnologia 24 (2022) 43. O’HANA, S.; BOTTOMLEY, S. Mediterranean threads: jewellery and textile design narratives. Journal of Jewellery Research, v. 4, p. 34–58, 2021. 46. PEDROSA, J. As principais técnicas decorativas na Joalheria através da História. Disponível em: <http://www.joiabr.com.br/artigos/out13a.html>. Acesso em: 14 jul. 2015. 44. PALHANO, A. P.; CIDADE, M. K. Projeto de Produto Sustentável: reutilização de borracha de câmara de pneu aliado à tecnologia laser para o desenvolvimento de joias. . Anais do IX ENSUS - Encontro de Sustentabilidade em Projeto. Anais... Florianópolis: UFSC, 2021 47. SCARPITTI, C. The Contemporary Jewelry Perspective. Meanings and evolutions of a necessary practice. Journal of Jewellery Research, v. 4, p. 59–76, 2021. 5. CONSIDERAÇÕES FINAIS 48. SCHNEIDER, B. Design - uma introdução : o design no contexto social, cultural e econômico. São Paulo: Edgard Blücher, 2010. 45. PALOMBINI, F. L.; CIDADE, M. K. Possibilities for the Recovery and Valorization of Single-Use EPS Packaging Waste Following Its Increasing Generation During the COVID-19 Pandemic: A Case Study in Brazil. In: MUTHU, S. S. (Ed.). Sustainable Packaging. Singapore: Springer- Nature, 2021. DOI: https://doi.org/10.1007/978-981-16- 4609-6_10 49. WALLACE, J.; DEARDEN, A. Digital jewellery as experience. In: Future Interaction Design. London: Springer-Verlag, 2005. p. 193–216. DOI: https://doi.org/10.1007/1-84628- 089-3_11
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Alleviation of Disease Activity in Lupus mice by Blocking Secondary Pyroptosis of Renal Tubular Epithelial Cells
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Page 1/19 Blocking Secondary Pyroptosis of Renal Tubular Epithelial Cells Guihu Luo  Southern Medical University Fangyuan Yang  Southern Medical University Zeqing Zhai  Southern Medical University Yi He  Southern Medical University Jiaochan Han  Southern Medical University Lili Zhuang  Southern Medical University Yanang Zhang  Southern Medical University Yehao Li  Southern Medical University Rui Song  Southern Medical University Xiaoqing Luo  Southern Medical University Jianheng Liang  Southern Medical University Erwei Sun  (  sunew@smu.edu.cn ) Southern Medical University https://orcid.org/0000-0001-5664-513X Research article Keywords: SLE, GSDME, pyroptosis, JNK, SP600125, caspase-3 Posted Date: January 7th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-140006/v1 Guihu Luo  Southern Medical University Fangyuan Yang  Southern Medical University Zeqing Zhai  Southern Medical University Yi He  Southern Medical University Jiaochan Han  Southern Medical University Lili Zhuang  Southern Medical University Yanang Zhang  Southern Medical University Yehao Li  Southern Medical University Rui Song  Southern Medical University Xiaoqing Luo  Southern Medical University Jianheng Liang  Southern Medical University Erwei Sun  (  sunew@smu.edu Southern Medical University h Research article Keywords: SLE, GSDME, pyropto Posted Date: January 7th, 2021 License:   This work is licensed under a Creative Commons Attribution 4.0 International License.   Read Full License License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Research article Page 1/19 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 2/19 Abstract Background:Increased apoptosis and/or defect in clearance apoptotic cells resulting in massive secondary necrosis have been recognized as the main causes of systemic lupus erythematosus. Recent findings have revealed that GSDME, a membrane pore protein downstream of caspase-3, is a key mediator of secondary pyroptosis and cellular membrane disruption. Here, we aim to investigate the effects of secondary pyroptosis on disease activity in lupus mice. Methods:In vivo, Pristane-induced lupus mice were treated with JNK inhibitor SP600125 or vehicle. The disease severity was evaluated and the expression of GSDME and cleaved-caspase-3 detected. In vitro, HK2 human tubular epithelial cells were pretreated with SP600125, followed by treatment with apoptosis inducer, TNF+CHX, or SLE sera. And then the secondary pyroptosis were examined. Results:In vivo, high levels of GSDME expression were revealed in renal tubules in PIL mice and SLE patients. In lupus mice, SP600125 administration effectively ameliorated lupus-like features and importantly, reduced the expression of GSDME and cleaved caspase-3 in renal tubules. In vitro, treatment with TNF+CHX or SLE sera induced HK2 cells to undergo secondary pyroptosis in a caspase-3-GSDME dependent manner. Likewise, SP600125 significantly reduced GSDME expression and decreased the secondary pyroptosis in HK2 cells. Conclusions:The GSDME-mediated pyroptosis may be one of the pathogenesis of SLE and targeting GSDME may be a potential strategy for treating SLE. Introduction Systemic lupus erythematosus (SLE) is a complex autoimmune disease involving multiple organs[1].The overall incidence of SLE ranges from 30.0 to 37.6 per 100,000 per year in China[2].To date, extensive studies have been conducted on the pathogenesis and treatment of SLE, but the molecular mechanism of SLE pathogenesis remains unclear. Increased apoptosis and defective clearance are observed in SLE and these apoptotic cells are more prone to progress to secondary necrosis. Many previous studies have demonstrated that secondary necrosis of apoptotic cells plays an important role in the pathogenesis and development of SLE[3–5]. Cell death plays an important role in the maintenance of homeostasis and immune response, and different ways of cell death have different effects on immune response. More than 10 years ago, our research group proposed the "Cell death" recognition model[6, 7]that emphasized the different patterns of cell death in determining the outcomes of immune responses. Necrotic cells initiate the secretion of pro- inflammatory cytokines to activate immune response, while apoptotic cells induce immune tolerance by inducing anti-inflammatory cytokines. Although apoptotic cells themselves induce immune tolerance, secondary necrosis occurs when apoptotic cells are not cleared timely and effectively, which can significantly promote inflammatory factors release, enhance immune response, and participate in the pathogenesis of SLE[5].Therefore, preventing the secondary necrosis of apoptotic cells and maintaining Page 3/19 the cells in the apoptotic stage may become one of the choices to prevent autoimmune diseases such as SLE. Secondary necrosis after apoptosis was once considered to be a passive and uncontrollable process of cell death due to the exhaustion of cell energy, failing to maintain osmotic pressure[8, 9]. However, recent findings revealed that secondary necrosis after apoptosis was also a programmed process called pyroptosis that was mediated by GSDME[10, 11]. In the GSDME-high cells, a previously presumed key apoptosis inducer, activated caspase-3, cleaves GSDME to generate the GSDME-N domain. Subsequently, the GSDME-N domain assembles in cellular membrane to form pores, thereby resulting in secondary necrosis. This finding is very encouraging because it opens a window to prevent the secondary necrosis of apoptotic cells and raises new hope for the treatment of SLE. C-jun N-terminal kinases (JNKs) are a member of MAPK kinases,and they can be activated by different stress stimuli and have various regulatory functions[12]. JNKs are involved in the development and progression of inflammatory diseases[13]. Materials Rabbit polyclonal antibodies recognizing cleaved Caspase 3 and the N-terminal of GSDME were purchased from Abcam(Catalogue No.ab13847 and No.ab175614,Cambridge, UK). Rabbit monoclonal antibodies to GSDME-N-terminal or JNK1+JNK2+JNK3 or JNK1 + JNK2 + JNK3 (phospho T183+T183+T221) also from Abcam(Catalogue No.ab215191 or No.ab179461 or No.ab124956,Cambridge, UK).TNF-α was purchased from InvivoGen (Catalogue No.rcyc-htnfa,San Diego, USA).Cycloheximide(CHX) was purchased from Sigma-Aldrich (Catalogue No.66-81-9,St.Louis, MO, USA).TNF-α+ CHX acts as an inducer of apoptosis[11].The JNK inhibitor SP600125 was purchased from Selleck(Catalogue No.S1460, Houston, TX, USA). Introduction Importantly, studies have shown that increased JNK activation associated with disease activity and organ injury in patients with SLE[14]. Interestingly, one study has found that SP600125,a JNK inhibitor, can prevent GSDME-mediated cell death[15], suggesting that JNK may be a target for regulating GSDME. Therefore, this study mainly aimed to investigate whether inhibiting JNK could reduce secondary pyroptosis and thus alleviated the disease condition of pristane-induced lupus mice. Microscopy To examine the morphological changes of apoptotic or secondary pyroptotic cells, HK2 cells were seeded in the 6-well plates and subjected to indicated treatments. Bright field cell images were captured using the Optical inverted microscope (Olympus, Japan).All the image data displayed represents at least three random field of view. HK2 cell Hoechst/PI fluorescent staining HK2 cells were seeded in the 24-well plates and treated with TNF-α and CHX. Then, cells were stained with Hoechst (Beyotime, China) and PI(BD, USA).Images were collected with a fluorescence microscope(Carl Zeiss, Germany). Immunofluorescent analysis of GSDME After treatment with TNF-α and CHX, the expression of GSDME was detected by immunofluorescence. Cells were fixed with 4 % paraformaldehyde, permeabilized with 0.2 % Triton X-100, and blocked with 5 % fetal bovine serum (FBS). Then, the cells were stained with rabbit anti-GSDME antibody, followed by incubation with a Cy3-conjugated goat secondary antibody against rabbit IgG (Servicebio,China,).Finally, the cells were stained with DAPI(Thermo Fisher Scientific, USA). Images were captured and analyzed with a fluorescence microscope (Carl Zeiss, Germany). Scientific, USA). Images were captured and analyzed with a fluorescence microscope (Carl Zeiss, LDH release assay After TNF-α and CHX treatment, the activity of LDH released into cell culture supernatants was measured by using the LDH release kit (Promega) according to the manufacturer’s protocol. The supernatant LDH activity was expressed as a percentage of total LDH in the cell lysate. Western blot Cells or tissues were lysed in RIPA protein lysate (Beyotime, China). Cell lysates were fractionated by SDS- polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to PVDF membranes (Roche, Swit). Blots were probed with appropriate antibodies. Expressions of full length-GSDME and GSDME-N-terminal were detected using anti-GSDME antibodies. Data were analyzed by Image J Software. Cell culture Human tubular epithelial cell line (HK2) was from Bio-Rad Laboratories (Shanghai, China) and the cells cultured in DNME/F12 media containing 10% FBS and 1% penicillin streptomycin. The cells were stimulated with TNF-α(20 ng/ml) and CHX(10μg/ml) to induce cell death, with or without pretreatment with SP600125 (30μM) for 1 h. Page 4/19 Page 4/19 Pristane induced lupus (PIL) models As described previously,female BALB/ C mice at 6-8 weeks were intraperitoneally injected with 0.5ml Pristane(Sigma-Aldrich)[16]. Urine protein was detected at 6 weeks after modeling, and urine protein score measured once every two weeks. Albustix test paper was used to determine the urinary protein. The mice were stimulated to urinate by gentle massage of the abdomen, and urine was collected. The fresh urine was dropped into the reaction area of the test paper, and the results were read within 1min. The urine Page 5/19 protein score was determined according to the comparison between the color degrees of the reaction area and the standard color band. If urine protein score was more than 1 point in two consecutive tests, it was decided that the modeling was successful. protein score was determined according to the comparison between the color degrees of the reaction area and the standard color band. If urine protein score was more than 1 point in two consecutive tests, it was decided that the modeling was successful. PIL mice were divided into three groups, named vehicle only control group, PIL group (n=9), and PIL+SP600125 group(n=9) respectively. Six normal mice were treated with vehicle as control group. In the PIL group, mice received the same amount of vehicle solution (DMSO and PBS). In PIL+SP600125 group, mice were injected intraperitoneally with SP600125 dissolved in 2% dimethyl sulfoxide (DMSO) in PBS at a dose of 30 mg/kg body weight once per day [17]. Immunofluorescence analysis of GSDME/Caspase-3 p17 The frozen kidney sections were blocked with 5% fetal bovine serum and then stained with rabbit anti- GSDME antibody(Abcam, Catalogue No.ab215191) and rabbit anti-caspase3 p17 antibody (Abcam, Catalogue No.ab13847), followed by staining with a second Cy3-conjugated goat anti-rabbit immunoglobulin G (IgG) antibody (Servicebio, Catalogue No.GB21303).For assessment of mouse IgG deposition in kidneys, the frozen kidney sections were stained with Alexa Fluor 555-conjugated goat anti- mouse IgG(Abcam, Catalogue No.b150114). Assessment of histopathological changes Renal tissues were fixed with 10% formalin and paraffin-embedded for tissue sectioning. The sections were then stained with hematoxylin and eosin (H&E). Histopathological changes were examined by pathologists unaware of the experimental information. Austin score to grade lupus disease activity was used as described previously [18]. Statistical analysis All data were expressed as mean ± standard deviation, analyzed by SPSS 20.0 software, and plotted by GraphPad Prism 7.0 . One-way ANOVA was used for the comparison of the mean between groups.The difference was considered statistically significant where p<0.05 between comparisons. TNF-α and CHX induced secondary pyroptosis in HK2 cells It has been known that GSDME plays a key role in the secondary pyroptosis[10, 11]. Given that high levels of GSDME were found in renal tubules of lupus kidneys, next we investigated whether renal tubules epithelial cells could develop secondary pyroptosis. In vitro, human tubular epithelial cells (HK2 cells) were treated with the previous presumed apoptosis inducer (TNF-α+CHX)[11], and the secondary pyroptosis of HK2 cells examined. After the treatment of TNF-α+CHX, necrotic HK2 cells were significantly increased(Fig.2 A and C), and the dying cells showed evident swelling with characteristic large bubbles protruding from the plasma membrane(Fig.2 B).What’s more, TNF-α+CHX treated HK2 cells showed elevated expression of activated caspase-3 and GSDME-N (Fig.2 D). These results confirmed that TNF-α and CHX induced HK2 cells to undergo secondary pyroptosis. When siRNA was used to silence GSDME expression(Fig.2 E),secondary pyroptosis was significantly reduced(Fig.2 F and G). SP600125 inhibited secondary proptosis JNK is a member of MAPK kinases, and it is involved in the pathological process of inflammation. Previous study has reported that the JNK inhibitor SP600125 blocks GSDME-mediated cell death [21]. Next, we investigated the effect of SP600125 on secondary pyroptosis of HK2 cells. We found that SP600125 significantly decreased the secondary pyroptosis, manifested by decreased LDH release (Fig.3 A), diminished cell swelling (Fig.3 B) and reduced numbers of PI positive cells(Fig.3 C). Interestingly, GSDME expression increased after TNF-α+CHX treatment, but decreased significantly when SP600125 was applied (Fig.3 D). It has been known that the total GSDME includes full length GSDME(GSDME-FL) and GSDME-N-terminal(GSDME-N). We found that SP600125 inhibited the production of total GSDME and GSDME-N(Fig.3 E) , suggesting that SP600125 can inhibit both expression and activity of GSDME. These results confirmed that SP600125 significantly blocked the secondary pyroptosis of HK2 cells by reducing the GSDME mediated cell signaling. Increased GSDME expression in the kidneys of SLE patients and PILmice Lupus nephritis, as the main clinical manifestation of SLE[19],develops in most SLE patients within 5 years of diagnosis[20].Therefore, we tested the kidney specimens of SLE patients and PIL mice. In the kidneys of SLE patients or PIL mice, the renal tubulointerstitium was infiltrated by a large number of inflammatory cells, with disrupted renal tubules, glomerular atrophy and interstitial fibrosis(Fig.1A and C). Importantly, GSDME protein was highly expressed in renal tubules (Fig.1B) in SLE patients and PIL mice (Fig.1D-E). Page 6/19 Page 6/19 Sera of lupus patients increased GSDME expression As we found that GSDME expression increased in renal tubular epithelial cells of lupus patients, it is important to know the mechanisms underlying the increased GSDME expression. To this end, HK2 cells were stimulated with serum from lupus patients and examined GSDME expression. The sera of lupus patients or healthy controls were prepared, and then added them to the medium to prepare 10% cell culture medium. HK2 cells were cultured in prepared medium for 72h. Interestingly, we found the serum of lupus patients significantly enhanced the expression of GSDME(Fig.4 A and B) and secondary pyroptosis(Fig.4 C). Likewise, SP600125 treatment reduced serum-induced GSDME expression and secondary pyroptosis of HK2 cells(Fig.4 C). SP600125 inhibited GSDME-mediated secondary pyroptosis in PIL mice Compared with the control group , the expression of GSDME in renal tubular epithelial cells in the PIL mice group was significantly increased(Fig.6A), as well as the expression of cleaved caspase3(Fig.6B).Importantly, lupus-prone mice treated with SP600125 showed a reduction in the protein expression levels of GSMDE and cleaved caspase-3(Fig.6A and B). Particularly, abundant GSDME-N in kidney were easily detected in vehicle-treated PIL mice, but rarely found in SP600125-treated PIL mice (Fig. 6C). Based on these results, SP600125 inhibited GSDME-mediated secondary pyroptosis in kidney. SP600125 effectively attenuated disease activity in PIL mice Page 7/19 Mice intraperitoneally administered pristane develop autoantibodies and clinical manifestations similar to those of SLE[22, 23].One study demonstrated that pristane-induced increased apoptosis, provided autoantigens and initiated immune response that led to the development of lupus like autoimmunity[24]. To know whether SP600125 could attenuate SLE activity, we treated PIL mice with SP600125 for 16 weeks. Importantly, SP600125 treatment resulted in not only reduced proteinuria (Fig. 5A), but also decreased levels of anti-dsDNA and anti-Sm antibodies (Fig. 5B). In addition, kidney H&E staining revealed that SP600125 treatment alleviated renal injury (Fig. 5C) , decreased the deposition of IgG (Fig. 5D), and declined plasma IL-6 and TNF-α levels (Fig. 5E).Taken together, these findings suggested that SP600125 treatment could alleviate lupus-like features in PIL mice. Discussion Systemic lupus erythematosus (SLE) is an autoimmune disease characterized by the presence of nuclear autoantibodies,and involved in multiple organs[25]. Although the survival rate of SLE patients has improved in the past decade [26], recent advances have not reduced mortality or the development of end- stage lupus nephritis [27, 28], which suggests that further study on the pathogenesis of SLE is of great clinical value. In this study, high levels of GSDME were revealed in renal tubules from SLE patients. Meanwhile, the expressions of GSDME and cleaved caspase-3 in renal tubules of Pristane-induced lupus (PIL) mice were also increased, suggesting that GSDME-mediated secondary pyroptosis may play an important role in the pathogenesis and development of SLE (Figs. 1 and 6). Subsequently, renal tubular epithelial cells (HK2) were selected as the study objects to verify the mechanism of GSDME-mediated secondary pyroptosis. HK2 cells stimulated with TNF + CHX showed elevated protein expression levels of cleaved caspase-3 and GSDME-N domain and increased secondary pyroptosis(Fig. 2). Importantly, sera of SLE patients also induced HK2 cells to undergo secondary pyroptosis (Fig. 4). Interestingly, a JNK inhibitor, SP600125, significantly reduced the expression of GSDME and the secondary pyroptosis of HK2 cells (Fig. 3). In vivo, SP600125 administration effectively ameliorated lupus-like features in PIL mice, showed by a reduction in levels of autoantibodies, a decrease in proteinuria and an improvement in pathology of kidneys (Fig. 5). Importantly, PIL mice treated with Page 8/19 Page 8/19 SP600125 showed a reduction in the expression levels of GSMDE and cleaved caspase-3(Fig. 6). Based on these results, we believe that SP600125 effectively attenuates disease activity in PIL mice by inhibiting GSDME-mediated secondary pyroptosis. SP600125 showed a reduction in the expression levels of GSMDE and cleaved caspase-3(Fig. 6). Based on these results, we believe that SP600125 effectively attenuates disease activity in PIL mice by inhibiting GSDME-mediated secondary pyroptosis. GSDME, also known as DFNA5 (Deafness, Autosomal Dominant 5), was first associated with sensorineural hearing loss in humans [29]. Most deafness-causing mutations in GSDME lead to deletion of GSDME C-terminal transcription and could induce spontaneous pyroptosis[30].In addition to hearing loss, GSDME has been linked to many cancers, such as breast[31, 32], epatocellular[33], gastric[34] colorectal[35]cancers. Discussion In these cancers, GSDME methylation was significantly increased, resulting in GSDME epigenetic silencing, which reduced GSDME levels[36].GSDME can be regulated by p53 because the presence of p53 binding sites in GSDME intron 1[36].Treatment with the demethylating agent, such as 5-aza-2'-deoxycytidine, can restore p53-induced GSDME expression[37]. Based on these reports, GSDME is considered to be a tumor suppressor gene because inactivation of GSDME inhibits its necrotic function, thus promoting tumor formation. GSDME actually has roles in the switch of the cell death mode from apoptosis to secondary pyroptosis[38].Caspase-3 specifically clevages and activates GSDME, resulting in pyroptosis.This changes the concept of programmed cell death as caspase-3 is long considered a marker of apoptosis.In fact, it is the expression level of GSDME that determines the cell death mode of Caspase-3 activated cells[11].Cells with high GSDME expression undergo pyroptosis upon the stimulation of apoptotic inducer like chemotherapy drug. Whereas, cells lacking sufficient GSDME develop apoptosis. GSDME may play a role in chemotherapy-induced caspase-3-dependent cell death due to its ability to regulate apoptosis and secondary pyroptosis[11]. In vivo study, Gsdme−/− mice were protected from chemotherapy drug induced tissue damages and weight loss[11]. Peritoneal injection of cisplatin or 5-FU caused severe small intestinal impairment and infiltration of immune cells in Gsdme+/+ mice, whereas these signs of tissue damage were reduced in Gsdme−/− mice[38].Moreover, Gsdme−/− mice showed attenuated lung injury and inflammation in response to cisplatin or bleomycin[38].These observations confirmed a significant role of GSDME-mediated cell death in promoting inflammation and organ damage. However, the role of GSDME-mediated secondary pyroptosis in lupus has not been reported. Here, we found that high levels of GSDME were found in kidney specimens from SLE patients and lupus- prone mice. We also provided evidence that GSDME-mediated secondary pyroptosis may play an important role in the pathogenesis and development of SLE. Therefore, preventing GSDME-mediated secondary is a new strategy and target for the treatment of SLE. C-jun N-terminal kinases (JNKs), as a member of the mitogen-activated protein kinases (MAPK) family, regulate physiological processes such as neuronal function, immune function and embryonic development by influencing gene expression, cytoskeleton protein dynamics and cell death/survival pathways[39]. Consent for publication Not applicable. Discussion In response to apoptotic stimulation, JNKs regulate the activity of various pro-apoptotic and anti-apoptotic proteins, thus participating in extrinsic and the intrinsic apoptotic pathways[40].Multiple abnormalities of the JNK pathway are involved in several autoimmune diseases, Page 9/19 Page 9/19 including chronic idiopathic urticaria, inflammatory bowel disease, and systemic lupus erythematosus (SLE)[41]. In SLE patients, increased JNK activities correlate with disease activity[42] and long-term organ damage[43]. SP600125 is a common JNKs highly selective inhibitor. Studies have shown that JNKs inhibitors, including SP600125, can significantly alleviate the symptoms of immune diseases[14].One study has found that the JNK inhibitor SP600125 can block GSDME-mediated cell death[15], but the mechanism is unclear. We found that SP600125 could significantly improve the symptoms of lupus mice by inhibiting secondary pyroptosis in two ways. Firstly, SP600125 can inhibit the activation of caspase3 protein and reduce the production of apoptotic cells. Second, SP600125 can reduce the expression and activation of GSDME, which inhibit the secondary pyroptosis, but initiate apoptotic signaling. From this perspective, SP600125 may be an ideal drug for the treatment of lupus. A limitation of this study should be noted. SP600125 can only indirectly regulate GSDME expression and activation and, currently, there are no specific GSDME inhibitors. Therefore, our next work will focus on the effect of GSDME knockout on lupus mouse model and the search for GSDME-specific inhibitors. Conclusions In conclusion, our data demonstrated that JNK inhibitor SP600125 effectively attenuated disease activity in PIL mice by inhibiting GSDME-mediated secondary pyroptosis. This implies the important role of GSDME-mediated secondary pyroptosis in SLE pathogenesis and development, and suggests that SP600125 may be a potential drug for treating SLE. Availability of data and material The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request. Ethics approval and consent to participate This study has been approved by the Ethics Committee of The Third Affiliated Hospital, Southern Medical University and all participants signed informed consent forms. Competing interests The authors declare that they have no competing interests. Authors' contributions GHL carried out most of the experiments, participated in the analysis of data, and drafted the manuscript. YH participated in the design of the study, data analysis and interpretation. FYY and ZQZ participated in the animal experiments and performed the statistical analysis. JCH carried out the flow cytometry analysis. LLZ,YNZ,YHL,RS,XQL,JHL participated in the animal experiments. EWS conceived the idea for the project, participated in its design and coordination, and modified the manuscript. All authors read and approved the final manuscript. Acknowledgements Not applicable. Page 10/19 Page 10/19 This work was supported by grants from National Natural Science Foundation of China (Grant Nos. 81873880) . References 1. Kaul A, Gordon C, Crow MK, Touma Z, Urowitz MB, van Vollenhoven R, Ruiz-Irastorza G, Hughes G. Systemic lupus erythematosus. Nat Rev Dis Primers. 2016;2:16039. 1. Kaul A, Gordon C, Crow MK, Touma Z, Urowitz MB, van Vollenhoven R, Ruiz-Irastorza G, Hughes G. Systemic lupus erythematosus. Nat Rev Dis Primers. 2016;2:16039. 2. Carter EE, Barr SG, Clarke AE. The global burden of SLE: prevalence, health disparities and socioeconomic impact. Nat Rev Rheumatol. 2016;12:605–20. 2. Carter EE, Barr SG, Clarke AE. The global burden of SLE: prevalence, health disparities and socioeconomic impact. Nat Rev Rheumatol. 2016;12:605–20. 3. Munoz LE, Lauber K, Schiller M, Manfredi AA, Herrmann M. The role of defective clearance of apoptotic cells in systemic autoimmunity. Nat Rev Rheumatol. 2010;6:280–9. 4. Mahajan A, Herrmann M, Munoz LE. Clearance Deficiency and Cell Death Pathways: A Model for the Pathogenesis of SLE. Front Immunol. 2016;7:35. 5. Mistry P, Kaplan MJ. Cell death in the pathogenesis of systemic lupus erythematosus and lupus nephritis. Clin Immunol. 2017;185:59–73. 6. Sun E. Cell death recognition model for the immune system. Med Hypotheses. 2008;70:585–96. 7. Sun EW, Shi YF. Apoptosis: the quiet death silences the immune system. Pharmacol Ther. 2001;92:135–45. 8. Gleiss B, Gogvadze V, Orrenius S, Fadeel B. Fas-triggered phosphatidylserine exposure is modulated by intracellular ATP. Febs Lett. 2002;519:153–8. 8. Gleiss B, Gogvadze V, Orrenius S, Fadeel B. Fas-triggered phosphatidylserine exposure is modulated by intracellular ATP. Febs Lett. 2002;519:153–8. 9. Zamaraeva MV, Sabirov RZ, Maeno E, Ando-Akatsuka Y, Bessonova SV, Okada Y. Cells die with increased cytosolic ATP during apoptosis: a bioluminescence study with intracellular luciferase. Cell Death Differ. 2005;12:1390–7. 9. Zamaraeva MV, Sabirov RZ, Maeno E, Ando-Akatsuka Y, Bessonova SV, Okada Y. Cells die with increased cytosolic ATP during apoptosis: a bioluminescence study with intracellular luciferase. Cell Death Differ. 2005;12:1390–7. 10. Rogers C, Fernandes-Alnemri T, Mayes L, Alnemri D, Cingolani G, Alnemri ES. Cleavage of DFNA5 by caspase-3 during apoptosis mediates progression to secondary necrotic/pyroptotic cell death. Nat Commun. 2017;8:14128. Page 11/19 Page 11/19 11. Wang Y, Gao W, Shi X, Ding J, Liu W, He H, Wang K, Shao F. Chemotherapy drugs induce pyroptosis through caspase-3 cleavage of a gasdermin. Nature. 2017;547:99–103. 12. Johnson GL, Lapadat R. Mitogen-activated protein kinase pathways mediated by ERK, JNK, and p38 protein kinases. Science. 2002;298:1911–2. 13. Cui J, Zhang M, Zhang YQ, Xu ZH. JNK pathway: diseases and therapeutic potential. Acta Pharmacol Sin. 2007;28:601–8. 14. References Guma M, Ronacher LM, Firestein GS, Karin M, Corr M. JNK-1 deficiency limits macrophage-mediated antigen-induced arthritis. Arthritis Rheum. 2011;63:1603–12. 15. Van Rossom S, Op DBK, Hristovska V, Winderickx J, Van Camp G. The deafness gene DFNA5 induces programmed cell death through mitochondria and MAPK-related pathways. Front Cell Neurosci. 2015;9:231. 16. Liao P, He Y, Yang F, Luo G, Zhuang J, Zhai Z, Zhuang L, Lin Z, Zheng J, Sun E. Polydatin effectively attenuates disease activity in lupus-prone mouse models by blocking ROS-mediated NET formation. Arthritis Res Ther. 2018;20:254. 17. Zhou Q, Wang M, Du Y, Zhang W, Bai M, Zhang Z, Li Z, Miao J. Inhibition of c-Jun N-terminal kinase activation reverses Alzheimer disease phenotypes in APPswe/PS1dE9 mice. Ann Neurol. 2015;77:637–54. 18. Austin HR, Muenz LR, Joyce KM, Antonovych TT, Balow JE. Diffuse proliferative lupus nephritis: identification of specific pathologic features affecting renal outcome. Kidney Int. 1984;25:689–95. 19. Pons-Estel GJ, Serrano R, Plasin MA, Espinosa G, Cervera R. Epidemiology and management of refractory lupus nephritis. Autoimmun Rev. 2011;10:655–63. 20. Anders HJ, Saxena R, Zhao MH, Parodis I, Salmon JE, C Mohan: Lupus nephritis. Nat Rev Dis Primers 2020, 6:7. 21. Van Rossom S, Op DBK, Hristovska V, Winderickx J, Van Camp G. The deafness gene DFNA5 induces programmed cell death through mitochondria and MAPK-related pathways. Front Cell Neurosci. 2015;9:231. 22. Satoh M, Kumar A, Kanwar YS, Reeves WH. Anti-nuclear antibody production and immune-complex glomerulonephritis in BALB/c mice treated with pristane. Proc Natl Acad Sci U S A. 1995;92:10934– 8. 23. Satoh M, Reeves WH. Induction of lupus-associated autoantibodies in BALB/c mice by intraperitoneal injection of pristane. J Exp Med. 1994;180:2341–6. 24. Calvani N, Caricchio R, Tucci M, Sobel ES, Silvestris F, Tartaglia P, Richards HB. Induction of apoptosis by the hydrocarbon oil pristane: implications for pristane-induced lupus. J Immunol. 2005;175:4777–82. 25. Durcan L, O'Dwyer T, Petri M. Management strategies and future directions for systemic lupus erythematosus in adults. Lancet. 2019;393:2332–43. Page 12/19 Page 12/19 26. Tsokos GC, Lo MS, Costa RP, Sullivan KE. New insights into the immunopathogenesis of systemic lupus erythematosus. Nat Rev Rheumatol. 2016;12:716–30. 27. Tektonidou MG, Lewandowski LB, Hu J, Dasgupta A, Ward MM. Survival in adults and children with systemic lupus erythematosus: a systematic review and Bayesian meta-analysis of studies from 1950 to 2016. Ann Rheum Dis. 2017;76:2009–16. 28. Tektonidou MG, Dasgupta A, Ward MM. References Risk of End-Stage Renal Disease in Patients With Lupus Nephritis, 1971–2015: A Systematic Review and Bayesian Meta-Analysis. Arthritis Rheumatol. 2016;68:1432–41. 29. Laer LV, Huizing EH, Verstreken M, van Zuijlen D, Wauters JG, Bossuyt PJ, Van de Heyning P, McGuirt WT, Smith RJ, Willems PJ, et al. Nonsyndromic hearing impairment is associated with a mutation in DFNA5. Nat Genet. 1998;20:194–7. 30. Gregan J, Van Laer L, Lieto LD, Van Camp G, Kearsey SE. A yeast model for the study of human DFNA5, a gene mutated in nonsyndromic hearing impairment. Biochim Biophys Acta. 2003;1638:179–86. 31. Croes L, Beyens M, Fransen E, Ibrahim J, Vanden BW, Suls A, Peeters M, Pauwels P, Van Camp G, Op DBK. Large-scale analysis of DFNA5 methylation reveals its potential as biomarker for breast cancer. Clin Epigenetics. 2018;10:51. 32. Stoll G, Ma Y, Yang H, Kepp O, Zitvogel L, Kroemer G. Pro-necrotic molecules impact local immunosurveillance in human breast cancer. Oncoimmunology. 2017;6:e1299302. 33. Wang CJ, Tang L, Shen DW, Wang C, Yuan QY, Gao W, Wang YK, Xu RH, Zhang H. The expression and regulation of DFNA5 in human hepatocellular carcinoma DFNA5 in hepatocellular carcinoma. Mol Biol Rep. 2013;40:6525–31. 34. Wang Y, Yin B, Li D, Wang G, Han X, Sun X. GSDME mediates caspase-3-dependent pyroptosis in gastric cancer. Biochem Biophys Res Commun. 2018;495:1418–25. 34. Wang Y, Yin B, Li D, Wang G, Han X, Sun X. GSDME mediates caspase-3-dependent pyroptosis in gastric cancer. Biochem Biophys Res Commun. 2018;495:1418–25. 35. Kim MS, Chang X, Yamashita K, Nagpal JK, Baek JH, Wu G, Trink B, Ratovitski EA, Mori M, Sidransky D. Aberrant promoter methylation and tumor suppressive activity of the DFNA5 gene in colorectal carcinoma. Oncogene. 2008;27:3624–34. 36. Li YQ, Peng JJ, Peng J, Luo XJ. The deafness gene GSDME: its involvement in cell apoptosis, secondary necrosis, and cancers. Naunyn Schmiedebergs Arch Pharmacol. 2019;392:1043–8. 37. Fujikane T, Nishikawa N, Toyota M, Suzuki H, Nojima M, Maruyama R, Ashida M, Ohe-Toyota M, Kai M, Nishidate T, et al. Genomic screening for genes upregulated by demethylation revealed novel targets of epigenetic silencing in breast cancer. Breast Cancer Res Treat. 2010;122:699–710. 38. Yu X, He S. GSDME as an executioner of chemotherapy-induced cell death. Sci China Life Sci. 2017;60:1291–4. 39. Zeke A, Misheva M, Remenyi A, Bogoyevitch MA. JNK Signaling: Regulation and Functions Based on Complex Protein-Protein Partnerships. Microbiol Mol Biol Rev. 2016;80:793–835. 40. Dhanasekaran DN, Reddy EP. JNK signaling in apoptosis. References Oncogene. 2008;27:6245–51. 40. Dhanasekaran DN, Reddy EP. JNK signaling in apoptosis. Oncogene. 2008;27:6245–51. Page 13/19 Page 13/19 41. Molad Y, Amit-Vasina M, Bloch O, Yona E, Rapoport MJ. Increased ERK and JNK activities correlate with disease activity in patients with systemic lupus erythematosus. Ann Rheum Dis. 2010;69:175– 80. 42. Molad Y, Amit-Vasina M, Bloch O, Yona E, Rapoport MJ. Increased ERK and JNK activities correlate with disease activity in patients with systemic lupus erythematosus. Ann Rheum Dis. 2010;69:175– 80. 42. Molad Y, Amit-Vasina M, Bloch O, Yona E, Rapoport MJ. Increased ERK and JNK activities correlate with disease activity in patients with systemic lupus erythematosus. Ann Rheum Dis. 2010;69:175– 80. 43. Bloch O, Amit-Vazina M, Yona E, Molad Y, Rapoport MJ. Increased ERK and JNK activation and decreased ERK/JNK ratio are associated with long-term organ damage in patients with systemic lupus erythematosus. Rheumatology. 2014;53:1034–42. 43. Bloch O, Amit-Vazina M, Yona E, Molad Y, Rapoport MJ. Increased ERK and JNK activation and decreased ERK/JNK ratio are associated with long-term organ damage in patients with systemic lupus erythematosus. Rheumatology. 2014;53:1034–42. Figures Figure 1 GSDME was highly expressed in renal tubular cells in SLE patients and Pristane-induced lupus mice. (A) H & E staining renal pathological changes of health controls and SLE patients.(B)immunofluorescence analysis of the expressions of GSDME in kidney specimens from health controls and SLE patients. (C)H & E staining renal pathological changes and (D) immunofluorescence analysis of GSDME expression in control and PIL mice kidney .(E)Western blot (top) and quantitative analysis (bottom) of the expressions of GSDME in control and PIL mice kidney. Data were shown as mean ± SD, **p < 0.01. Figure 1 Figure 1 GSDME was highly expressed in renal tubular cells in SLE patients and Pristane-induced lupus mice. (A) H & E staining renal pathological changes of health controls and SLE patients.(B)immunofluorescence analysis of the expressions of GSDME in kidney specimens from health controls and SLE patients. (C)H & E staining renal pathological changes and (D) immunofluorescence analysis of GSDME expression in control and PIL mice kidney .(E)Western blot (top) and quantitative analysis (bottom) of the expressions of GSDME in control and PIL mice kidney. Data were shown as mean ± SD, **p < 0.01. Page 14/19 Figure 2 TNF+CHX induced secondary pyroptosis in HK2 cells. (A)HK2 cells were treated with TNF-α and CHX for 12h, then the cell viability was detected using LDH release.(B) Phase-contrast imaging assay of HK2 cells after TNF-α and CHX treatment.(C)Flow cytometry of propidium iodide (PI) and Annexin V- FITC-stained cells. (D)Western blot (left) and quantitative analysis (right) of the expressions of GSDME (n=3). (E) HK cells were transfected with NC- or GSDME-siRNA. (F)LDH releases and (G)phase-contrast images of HK2 cells were detected after TNF-α and CHX treatment. Arrows, the pyroptotic cells. Data were shown as mean ± SD, **p < 0.01,***p < 0.001,****p < 0.0001. Figure 2 Figure 2 TNF+CHX induced secondary pyroptosis in HK2 cells. (A)HK2 cells were treated with TNF-α and CHX for 12h, then the cell viability was detected using LDH release.(B) Phase-contrast imaging assay of HK2 cells after TNF-α and CHX treatment.(C)Flow cytometry of propidium iodide (PI) and Annexin V- FITC-stained cells. (D)Western blot (left) and quantitative analysis (right) of the expressions of GSDME (n=3). (E) HK cells were transfected with NC- or GSDME-siRNA. (F)LDH releases and (G)phase-contrast images of HK2 cells were detected after TNF-α and CHX treatment. Arrows, the pyroptotic cells. Data were shown as mean ± SD, **p < 0.01,***p < 0.001,****p < 0.0001. Page 15/19 Figure 3 SP600125 inhibited GSDME mediated secondary pyroptosis in HK cells. HK2 cells were pretreated wit SP600125 for 1h and then exposed to TNF-α and CHX for 12h. (A)Levels of LDH were detected. (B)Ph contrast images of HK2 cells were detected. (C)HK2 cells were stained with Hochest(blue) and PI(red) (D)Immunofluorescence staining for GSDME(red) was assessed.(E)Expression of GSDME-FL and Figure 3 SP600125 inhibited GSDME mediated secondary pyroptosis in HK cells. HK2 cells were pretreated with SP600125 for 1h and then exposed to TNF-α and CHX for 12h. (A)Levels of LDH were detected. (B)Phase- contrast images of HK2 cells were detected. (C)HK2 cells were stained with Hochest(blue) and PI(red). (D)Immunofluorescence staining for GSDME(red) was assessed.(E)Expression of GSDME-FL and Figure 3 SP600125 inhibited GSDME mediated secondary pyroptosis in HK cells. HK2 cells were pretreated with SP600125 for 1h and then exposed to TNF-α and CHX for 12h. (A)Levels of LDH were detected. (B)Phase- contrast images of HK2 cells were detected. (C)HK2 cells were stained with Hochest(blue) and PI(red). (D)Immunofluorescence staining for GSDME(red) was assessed.(E)Expression of GSDME-FL and Page 16/19 Page 16/19 GSDME-N were detected by western blot. Data were shown as mean ± SD, *p < 0.05,**p < 0.01,***p < 0 001 GSDME-N were detected by western blot. Data were shown as mean ± SD, *p < 0.05,**p < 0.01,***p < 0.001. 0.001. Figure 4 Sera of lupus patients induced high expression of GSDME in HK cells. The sera of lupus patients(n=5) or healthy controls(n=3) were mixed together, and then added them to the medium to prepare 10% cell culture medium.HK2 cells were cultured in prepared medium for 72h.(A)Western blot (left) and quantitative analysis (right) of the expressions of GSDME.(B)HK2 cells were immunofluorescent stained by DAPI(blue) and GSDME(red).(C)HK2 cells were pretreated with SP600125 for 1h and then exposed to the serum of lupus patients or normal controls, western blot and quantitative analysis of the expressions of GSDME Data were shown as mean ± SD **p < 0 01 ***p < 0 001 0.00 . Figure 4 Sera of lupus patients induced high expression of GSDME in HK cells. The sera of lupus patients(n=5) or healthy controls(n=3) were mixed together, and then added them to the medium to prepare 10% cell culture medium.HK2 cells were cultured in prepared medium for 72h.(A)Western blot (left) and quantitative analysis (right) of the expressions of GSDME.(B)HK2 cells were immunofluorescent stained by DAPI(blue) and GSDME(red).(C)HK2 cells were pretreated with SP600125 for 1h and then exposed to the serum of lupus patients or normal controls, western blot and quantitative analysis of the expressions of GSDME. Data were shown as mean ± SD, **p < 0.01,***p < 0.001. Page 17/19 Figure 5 Figure 5 SP600125 effectively attenuated disease activity in PIL mice. (A)Albustix test paper was used to determine the urinary protein. Urine protein score was measured once every two weeks. (B,E)The levels of autoantibodies(anti-dsDNA antibody and anti-Sm antibody) and cytokines(IL-6 and TNF-α) were examined by ELISA kit.(C)Representative H&E staining of glomerular and renal tubular lesions in kidneys were shown (left). Austin scores of kidneys were determined (right).(D)Immunofluorescence showed IgG deposition in the kidney. Data were shown as mean ± SD, *p < 0.05,**p < 0.01,***p < 0.001. Figure 5 SP600125 effectively attenuated disease activity in PIL mice. (A)Albustix test paper was used to determine the urinary protein. Urine protein score was measured once every two weeks. (B,E)The levels of autoantibodies(anti-dsDNA antibody and anti-Sm antibody) and cytokines(IL-6 and TNF-α) were examined by ELISA kit.(C)Representative H&E staining of glomerular and renal tubular lesions in kidneys were shown (left). Austin scores of kidneys were determined (right).(D)Immunofluorescence showed IgG deposition in the kidney. Data were shown as mean ± SD, *p < 0.05,**p < 0.01,***p < 0.001. Page 18/19 Figure 6 Figure 6 SP600125 inhibited GSDME mediated secondary pyroptosis in PIL Mice. (A,B)Immunofluorescence staining for GSDME and cleaved caspase-3 in each group mouse kidney were assessed.(C)Western blot and quantitative analysis of the expressions of GSDME and cleaved caspase-3.Data were shown as mean ± SD, *p < 0.05,**p < 0.01. Page 19/19 Page 19/19 Page 19/19
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Multimarket contacts and bank profitability: do diversification and bank ownership matter?
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Article Multimarket contacts and bank profitability: Do diversification and bank ownership matter? Cogent Economics & Finance Provided in Cooperation with: Taylor & Francis Group Provided in Cooperation with: Taylor & Francis Group p Taylor & Francis Group Suggested Citation: Tu Dq Le (2020) : Multimarket contacts and bank profitability: Do diversification and bank ownership matter?, Cogent Economics & Finance, ISSN 2332-2039, Taylor & Francis, Abingdon, Vol. 8, Iss. 1, pp. 1-21, https://doi.org/10.1080/23322039.2020.1849981 Terms of use: Die Dokumente auf EconStor dürfen zu eigenen wissenschaftlichen Zwecken und zum Privatgebrauch gespeichert und kopiert werden. Documents in EconStor may be saved and copied for your personal and scholarly purposes. You are not to copy documents for public or commercial purposes, to exhibit the documents publicly, to make them publicly available on the internet, or to distribute or otherwise use the documents in public. 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Sofern die Verfasser die Dokumente unter Open-Content-Lizenzen (insbesondere CC-Lizenzen) zur Verfügung gestellt haben sollten, gelten abweichend von diesen Nutzungsbedingungen die in der dort genannten Lizenz gewährten Nutzungsrechte. https://creativecommons.org/licenses/by/4.0/ https://creativecommons.o Cogent Economics & Finance Cogent Economics & Finance ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/oaef20 ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/oaef20 Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=oaef20 1. Introduction The banking sector has long been limited both geographically and in scope by strict regulations and controls. The structural reform and liberalization process in the Vietnamese banking system in the last two decades have impacted the competitive conditions. Especially, Decision No. 13/2008/QD- NHNN was introduced by the State Bank of Vietnam in 2008 to remove the geographical constraints of commercial banks by loosening the capital requirements on opening branches and/or additional Multimarket contacts and bank profitability: do diversification and bank ownership matter? Tu Dq Le1,2* Multimarket contacts and bank profitability: do diversification and bank ownership matter? Tu Dq Le1,2* Abstract: This study investigates the impact of multimarket contacts on bank profitability in the Vietnamese banking system from 2006 to 2015 using the system GMM. The findings indicate in general no evidence of the mutual forbearance hypothesis in this sector. However, we do find evidence of tacit collusion for the case of foreign-owned banks and newly combined banks with greater multimarket contacts. Finally, this study reveals that on average the most profitable banks are less geographically diversified, more technically efficient, and have lower credit risk. Regarding the role of bank ownership, more profitable banks are state-owned commercial banks, listed banks, and non-merged banks. Received: 11 May 2020 Accepted: 08 November 2020 *Corresponding author: Tu DQ Le, Institute for Development and Research in Banking Technology, University of Economics and Law, Ho Chi Minh City 70000, Vietnam Email: tuldq@uel.edu.vn Reviewing editor: David McMillan, University of Stirling, Stirling, United Kingdom Additional information is available at the end of the article Subjects: Economics; Banking; Credit & Credit Institutions Keywords: Multimarket contact; diversification; bank ownership; profitability; Vietnam; GMM Subjects: G21; G28; G30 Subjects: G21; G28; G30 Tu Dq Le | To cite this article: Tu Dq Le | (2020) Multimarket contacts and bank profitability: do diversification and bank ownership matter?, Cogent Economics & Finance, 8:1, 1849981, DOI: 10.1080/23322039.2020.1849981 To link to this article: https://doi.org/10.1080/23322039.2020.1849981 © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. Published online: 18 Nov 2020. Submit your article to this journal Article views: 798 View related articles View Crossmark data Citing articles: 4 View citing articles © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. Published online: 18 Nov 2020. Submit your article to this journal Article views: 798 View related articles View Crossmark data Citing articles: 4 View citing articles Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 PUBLIC INTEREST STATEMENT Indeed, although there was a reduced number of banks from 2006 to 2015 due to several merger and acquisition activities, the total number of bank branches in 2015 was more than twice as high as that in 2006 (Le et al., 2019). This thus allows banks to establish diverse branch networks across different regions within the country. In another word, the competition among geographically diversified banks in more than one geographical market is increased. When banking firms vie for potential customers in multiple local markets, they may meet their rivals in other markets. Mutual forbearance or linked oligopoly as proposed by Edwards (1955) emphasizes that the decrease in competitive intensity among rivals due to the fear of retaliation by firms engaged in other common markets. However, the debate on the effects of multimarket contacts on banks’ competitive behavior is continued because of the conflicting results of prior empirical studies. One of the possible reasons is that the channels through which geographical diversification can affect a bank’s performance have not yet been fully investigated (Degl’Innocenti et al., 2014). This study attempts to verify whether the bank’s synergies can be generated via both intra-industry diversification and collusive behavior resulting from multimarket contacts. Our study also aims to test whether multimarket contacts can favor information sharing via the observation of the strategies of rivals in common markets, which is proved to improve bank performance. Specifically, this study contributes to the extant literature in several ways. Many studies have been conducted in developed markets, mainly the US and Europe where larger markets and a number of banks have facilitated economic modeling. The evidence of the effect of multimarket contacts in emerging is limited, especially in the Asia-Pacific region [a study by Le et al. (2019) in Vietnam may be one of the exceptions]. In contrast to Le, Tran and Nguyen’s study where their main focus is on the correlation between multimarket contacts and bank stability, our test of the mutual forbearance hypothesis is carried out using bank profitability measures. We also verify the possibility of an interaction between multimarket contact and market concentration may affect banks’ behavior. Mester (1987) and Degl’Innocenti et al. (2014) argue that in a context of high concentration, firms have the incentive to mislead other firms about their production costs and output to earn more profits. PUBLIC INTEREST STATEMENT Dr. Tu Le is a researcher at the Institute for Development & Research in Banking Technology, University of Economics and Law, Vietnam. He is currently working on several projects in the emerging markets in several fields – including banking and finance, manufacturing sector, e-commerce, and Fintech. This paper is under the project entitled “what we know about the Vietnamese banking system”. Several papers related to this project have been published in Managerial Finance, International Journal of Managerial Finance, Australasian Accounting Business and Finance Journal, Cogent Economics & Finance, Cogent Business & Management. In contrast, the current research is looking at the different issue named “multimarket contact and bank profitability”. The structural reform and liberalization process in the banking system in the last two decades have impacted the competitive conditions. When banking firms vie for potential customers in multiple local markets, they may meet their rivals in other markets. This may lead to a decrease in competitive intensity among rivals due to the fear of retaliation by firms engaged in other common markets according to the mutual forbearance or linked oligopoly hypothesis. Consequently, this may affect bank profitability. However, the evidence of the effects of multimarket contacts on banks’ competitive behavior is inconclu­ sive. One of the possible reasons is that the channels through which geographical diversification can affect a bank’s performance have not yet been fully inves­ tigated. This study attempts to verify whether the bank’s synergies can be generated via both intra- industry diversification and collusive behavior result­ ing from multimarket contacts. © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. Page 1 of 21 Page 1 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 branches in different provinces. Indeed, although there was a reduced number of banks from 2006 to 2015 due to several merger and acquisition activities, the total number of bank branches in 2015 was more than twice as high as that in 2006 (Le et al., 2019). This thus allows banks to establish diverse branch networks across different regions within the country. In another word, the competition among geographically diversified banks in more than one geographical market is increased. branches in different provinces. 2. Literature review The literature on bank multimarket contacts can be divided into two strands. The first strand is to investigate the effect of multimarket contacts on bank stability (Kasman & Kasman, 2016; Le et al., 2019). These studies conclude that multimarket contacts generally improve bank stability. The second strand is to test the mutual forbearance hypothesis by relating the level of multimarket contact to prices or profits. The mutual forbearance hypothesis proposes that multimarket con­ tacts may have the adverse effect of fostering incentives for tacit collusion thereby weakening competition. Therefore, multimarket firms could earn higher profits because of anti-competitive effects in addition to tie-in sales and exclusive dealing arrangements. Multimarket contacts, however, may lead to the intensity of competition, which reduces bank profitability. Although many studies have been conducted in many industries to test this hypothesis, the research in multimarket contacts in the banking system is still limited, perhaps, due to the unavailability of data used to estimate the index of multimarket contacts.2 Overall, the evidence is ambiguous and both theoretical and empirical research tends to provide conflicting findings. Most studies on the later strand are conducted in the developed markets. More specifically, the earlier studies such as Pilloff (1999) and Whalen (1996) in the US found that greater bank profit­ ability is associated with higher multimarket contacts along with higher concentration. The similar results are confirmed by Coccorese and Pellecchia (2009) and Coccorese and Pellecchia (2013) in Italy. However, others provide the opposite findings. Rhoades and Heggestad (1985) using the US data suggest that the relationship between multimarket contacts on bank profits and prices is ambiguous. Latter, Mester (1987) indicates that high concentration accompanied by higher multi­ market contact promotes rather more competitive than collusion. Using the Italian data, De Bonis and Ferrando (2000) indicate that the increasing competition and lower lending rates are related to greater geographical overlaps. For further analysis of single-market and multimarket banks, several studies show that multi­ market banks seem to enjoy a competitive advantage over single-market counterparts due to their geographic expansion, thus lowering deposit interest rates offered by single-market banks in the same market (Hannan & Prager, 2004) or resulting in a reduction in revenue and an increase in costs for single-market banks (Berger et al., 2007). Regarding diversification, multimarket contact, and the mutual forbearance hypothesis, there are also two distinct streams of research that offering contrasting results on the effect of diversification. PUBLIC INTEREST STATEMENT This study is the first attempt to extend the role of bank ownership in examining the relationship between multimarket contacts and bank profitability (state-owned commercial banks (SOCBs) vs privately owned commercial banks (POCBs), listed versus non-listed banks, foreign-owned versus domestic banks). Moreover, due to the structural changes in the Vietnamese banking system recently regarding M&A activities, we further examine whether this link may vary between merged and non-merged banks. All in all, this thus would provide a better understanding of multimarket contact characteristics in the Vietnamese banking system. In this study, we use a unique dataset highly representative of the universe of Vietnamese banks over 2006–2015 where there was a significant change in bank regulation on branch network as stated earlier and this period allows us to examine the effect of restructuring program on bank performance. The Vietnamese market is an ideal candidate for the analysis of multimarket contact for the following reasons. First, due to the liberalization process, POCBs have operated more actively and have gradually gained a large market share in terms of both deposits and credit market shares. Some POCBs have mainly focused on providing universal banking services in particular regions, while others have maintained large branch networks that allow them to operate on multiregional or national bases. The sector also went through a significant transformation since Vietnam’s entry into the World Trade Organization in 2007. Foreign banks have been allowed to acquire a certain amount of shares in the local banks. This further increases competition in the market. Because of the diversified bank structure, this allows us to examine whether the link between multimarket contact and bank profitability may vary among bank ownership. Second, Vietnam has emerged as one of the fast-growing economies in the world1 and is considered as Asia’s next dragon. Under this stellar of performance, the banking system is the backbone of the economy with the total bank assets, and total credit advanced in the economy in 2015 was more than six times as high as that in 2006. Last but not least, multimarket contacts on average have grown by approximately 12.3% while the total bank branches amounted to 11.4% over the same period. Page 2 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Our findings show a negative relationship between multimarket contacts and bank profitability in general, thus rejecting the mutual forbearance hypothesis in the Vietnamese banking system. PUBLIC INTEREST STATEMENT More profitable banks are associated with less geographically diversified, more efficient, and have better credit risk profile. Similar results are true for the case of state-owned commercial banks, listed banks, and non-merged banks. Foreign-owned banks on average are less profitable than their local counterparts. Finally, we do find evidence of pro-competitive effects derived from the combination of high market concentration and high contact. The remainder of this study is organized as follows: Section 2 presents the literature review on the relationship between multimarket contact and bank performance. Section 3 describes the methodology and data used. Section 4 discusses the empirical results while Section 5 concludes. 2. Literature review First, firms can benefit from exploiting excess resources through a diversification process. Diversification improves the extent to which firms meet in multiple markets which can affect the competitive behavior of rivals by favoring collusion (Gimeno & Woo, 1999). Another school of thought contends that focused firms can perform better than their diversified counter­ parts since diversification can induce value loss due to learning costs (Deng & Elyasiani, 2008) and lack of lending experience (Acharya et al., 2006; DeLong, 2001). Hence, our study accounts for the effect of geographic diversification in the model when controlling for multimarket contacts. Page 3 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Since bank profits can also be affected by bank structure and the findings are also mixed,3 we contend that the effect of multimarket contacts on bank profitability may vary among bank ownership. In the context of Vietnam where POCBs are serving customers on a national basis and gradually capturing market share from SOCBs,4 they tend to meet SOCBs in most of the markets. The question raised is that whether mutual forbearance between them may exist. Furthermore, one may argue that foreign banks may not only transfer knowledge and better managerial skills to local partners but also provide the necessary capital for them. This may encou­ rage foreign-owned banks to expand their branch networks to other markets, thus increasing multi­ market contacts. However, there exists a condition imposed by the government that the total shares of foreign investors must not exceed 30% of the charter capital of a local bank. This thus may induce foreign-owned banks to collude due to the fear of retaliation by banks engaged in other markets. Also, listed banks may have easier access to funds, for instance, by issuing shares on the stock exchange to finance their lending activities and investments. They may find it easier to meet the capital requirements to open additional branches. Additionally, a lack of transparency in the Vietnamese banking system5 limits domestic banks to attract more investors. Listed banks seem to be preferred by depositors and investors because they must follow the regulations of the stock market in terms of providing comprehensive information about their operating activities. All in all, listed banks may compete with non-listed banks in many markets. However, these banks may face constraints to maintain a reasonable level of profitability to attract investors. 2. Literature review This may cause collusive behaviors of listed banks. From 2011 through 2015, the Vietnamese banking system witnessed several merger and acquisi­ tion activities.6 The primary goals of these mergers were to improve the efficiency and competitive­ ness of consolidated banks while maintaining the branch networks of each merging banks. It is argued that the new-combined banks may compete with their counterparts in other markets. Taken together, the following hypotheses are proposed Taken together, the following hypotheses are proposed H1: There is no impact of multimarket contacts on bank profitability H1: There is no impact of multimarket contacts on bank profitability H2: There is no impact of geographic diversification on bank profitability H2: There is no impact of geographic diversification on bank profitability H3: The profitability of SOCBs with greater multimarket contacts is not different from that of those with less multimarket contacts and POCBs with greater/less multimarket contacts. H4: The profitability of foreign-owned banks with greater multimarket contacts is not different from that of those with less multimarket contacts and domestic banks with greater/less multimarket contacts. H4: The profitability of foreign-owned banks with greater multimarket contacts is not different from that of those with less multimarket contacts and domestic banks with greater/less multimarket contacts. H5: The profitability of listed banks with greater multimarket contacts is not different from that of those with less multimarket contacts and non-listed banks with greater/less multimarket contacts. H5: The profitability of listed banks with greater multimarket contacts is not different from that of those with less multimarket contacts and non-listed banks with greater/less multimarket contacts. H6: The profitability of merged banks with greater multimarket contacts is not different from that of those with less multimarket contacts and non-merged banks with greater/less multimarket contacts. H6: The profitability of merged banks with greater multimarket contacts is not different from that of those with less multimarket contacts and non-merged banks with greater/less multimarket contacts. The literature also suggests that bank profitability is influenced by other bank-specific and macroeconomic factors. The following section only considers common factors that have been found in prior studies. Bank efficiency. The efficiency-structure hypothesis suggests that efficient banks enjoy lower production costs which are translated into lower pricing by applying better management or more advanced production technologies. As a result, this increases sales and market share, which ultimately generates greater profitability (Berger, 1995; Sharma et al., 2013). 2. Literature review Page 4 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Credit risk. Credit risk is related to low profitability (Athanasoglou et al., 2008; Dietrich & Wanzenried, 2014; Miller & Noulas, 1997). Other studies, however, show that banks with more risky assets may require a greater profit to compensate for their greater risk (Figlewski et al., 2012). Bank capitalization. The signaling hypothesis suggests that banks may disclose information to the market about their prospects and capacity to generate profits. Hence, a signaling equilibrium may exist where banks that expect to have better future performance will exhibit a greater level of capital (Saona, 2016). Several studies, however, indicate that a positive impact of capital on bank profitability may not hold beyond a certain threshold (Le & Nguyen, 2020a). Also, a bank with an excessively high capital ratio is operating over- cautiously and ignoring opportunities for profitable growth, and therefore increasing opportu­ nity costs of capital (Berger, 1995; Sharma et al., 2013). Market concentration. Market concentration may influence bank profitability. The structure- conduct-performance hypothesis argues that banks with market power collude to charge high fees on loans and advances and non-traditional activities and lower rates on customer deposits, thus earning higher profits (Dietrich & Wanzenried, 2014; Saona, 2016). Several studies, however, show opposite findings (Bolarinwa & Obembe, 2017; Le & Ngo, 2020; Mirzaei et al., 2013). Bank reforms. Banking literature suggests that bank performance is also influenced by bank reforms (Lin & Zhang, 2009). In this study, we consider the effect of the restructuring program in the response to the GFC for the period of 2011–2015. Its key terms of reference included reasses­ sing the financial health of credit institutions in terms of bad debt and capital requirements. Accordingly, banks were mainly required to address their non-performing loans and improve their lending procedures, thus restricting to advance more loans as before. Therefore, this restric­ tion may reduce bank profitability in Vietnam. Economic growth. Several studies indicate that economic growth has either no significant impact (Sharma et al., 2013) or a negative impact on bank profitability (Tan & Floros, 2012). Economic growth, however, may increase demand for financial products and services offered by banks during cyclical upswings, thus improving bank profitability (Dietrich & Wanzenried, 2014). 3.1. Data Bank-specific information as shown in Table 1 was manually collected from annual reports and the audited financial statements of individual Vietnamese banks from 2006 to 2015 according to the Vietnamese Accounting Standards.7 The data on economic growth was obtained from the World Bank database. Furthermore, only domestic banks are considered in our study since they are main-active players while foreign bank affiliates, 100% foreign-owned banks, and joint-venture banks are somewhat limited to operate in the Vietnamese market.8 Therefore, this arrives at a total of 319 observations for an unbalanced panel data of 40 banks. The sample includes five SOCBs9 and 35 POCBs10 which together accounted for more than 80% of total assets in the industry. Prior studies defined a single-market bank as the one which operates in one market (or province) (Berger et al., 2007). There was such no single-market bank over the examined period that existed in the Vietnamese banking system. As a consequence, only multimarket banks are considered in our study. Table 2 indicates the descriptive statistics of the variables used in this study. When observing multimarket contact measures, there appear large volatilities (i.e. high standard deviations) in MMC1 and MMC2, reflecting the fact that several banks have operated in many markets while others have focused on serving in their niche markets. However, smaller volatility in MMC3 could be Page 5 of 21 Page 5 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 1. 3.1. Data According to the size classification based on total assets, there is not a large difference in bank size among banks in our sample, except for four state-owned banks. 3.1. Data Definitions of variables Variable Definition Expected sign RARROE Risk-adjusted returns on equity RARROE is the risk-adjusted return on equity as measured by the ratio of the return on equity (ROE) to the standard deviation of ROE Dependent variable RARROA Risk-adjusted returns on assets RARROA is the risk-adjusted return on assets as measured by the ratio of the return on assets (ROA) to the standard deviation of ROA Dependent variable π t-1 Persistence of profitability A lagged variable of bank profitability + MMC1 Average multimarket contact Calculated as the total number of contacts of bank i divided by the number of banks that bank i meets in each local market (see Appendix 1) ± MMC2 Weighted multimarket contact The number of contacts between two banks is weighted by an index measuring their similarity regarding market shares in all local markets where they meet each other ± MMC3 Alternative weighted multimarket contact The multimarket contact index further accounts for the size of the rival ± GEODIV Geographic diversification Calculated as: GEODIVi ¼ P j HHIj dij di   where HHIj is the Herfindahl—Hirschman Index in market j and dij and di are a number of branches of bank i in market j and the total number of branches of bank i, respectively ± INEFF Technical inefficiency 1 b^θDEA where b^θDEA is bias-corrected technical efficiency derived from the bootstrap DEA under variable returns to scale assumption - LLP Credit risk The ratio of loan loss provisions to total loans - EQTA Bank capitalization The ratio of equity over total assets ± OWNER Bank ownership A dummy variable takes a value of 1 for a state-owned commercial bank, 0 otherwise ± LISTED Public bank A dummy variable takes a value of 1 for a listed commercial bank, 0 otherwise ± FOREIGN Foreign ownership The actual percentage of foreign ownership over the capital of a local bank ± MERGER Bank consolidation This variable takes a value of 1 for a merged bank, 0 otherwise ± HHI Market concentration The Herfindahl-Hirschman index in terms of total assets ± RF Bank reform A dummy variable that takes a value of 1 for the restructuring program period of 2011–2015, 0 otherwise - GDP Economic growth The annual economic growth ± explained by how this variable is measured when the size of rivals is considered. 3.2. Methodology The purpose of this study is to investigate the effect of multimarket contacts on bank profitability in Vietnam. Taking into account the existing literature along with Vietnamese banks’ character­ istics, both bank-specific and macroeconomic factors are considered. Page 6 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 2. Descriptive statistics of variables used in the system GMM OBS Mean SD Min Max Sources RARROE 319 2.216 1.772 −2.537 13.49 Author’s estimate RARROA 319 2.288 2.283 −2.208 18.416 Author’s estimate MMC1 319 14.599 7.542 1 34.148 Le et al. (2019) MMC2 319 13.931 6.958 0.910 31.275 Le et al. (2019) MMC3 319 0.336 0.446 0.003 2.865 Le et al. (2019) GEODIV 319 0.095 0.038 0.042 0.26 Author’s estimate INEFF 319 0.123 0.081 0.029 0.467 Author’s estimate LLP 319 0.009 0.009 0.001 0.11 Author’s estimate EQTA 319 0.126 0.094 0.011 0.661 Author’s estimate OWNER 319 0.153 0.361 0 1 Author’s estimate LISTED 319 0.194 0.396 0 1 Author’s estimate FOREIGN 319 0.057 0.079 0 1 Author’s estimate MERGER 319 0.041 0.198 0 1 Author’s estimate HHI 319 0.082 0.021 0.062 0.139 Author’s estimate RF 319 0.514 0.501 0 1 Author’s estimate GDP 319 0.061 0.006 0.053 0.071 The World Bank One is endogeneity: as an example, more profitable banks may increase their capital ratios by retaining earnings. They could also spend more on advertising campaigns and increase their size, which in turn may affect profitability. However, more profitable banks may hire more professional staff, thus resulting in a reduction in their operating efficiency.11 Another critical issue is unobservable heterogeneity across banks, which could be very large in the Vietnamese banking system given differences in their corporate governance, which cannot be well-measured. Finally, bank profitability may be persistent for Vietnamese banks. To deal with three potential problems together and following prior studies such as Saona (2016) and Dietrich and Wanzenried (2014), the Generalised Method of Moments (GMM) system as proposed by Arellano and Bover (1995) is employed. This method accounts for endogeneity by using the lagged values of the dependent variable and the lagged value of other regressors which are potentially suffering from endogeneity as instruments. We instrument for all regressors except for those which are exogenous.12 The GMM system also controls for unobserved heterogeneity and the persistence of the dependent variable. All in all, this estimator yields consistent estimations of the parameters. 3.2. Methodology The estimated coefficients are also more efficient using an ampler set of instruments. The above arguments suggest the application of a dynamic model that takes the following for The above arguments suggest the application of a dynamic model that takes the following form: πi;t ¼ α0 þ α1πi;t1 þ α2MMCi;t þ α3GEODIVi;t þ α4INEFFi;t þ α5LLPi;t þ α6EQTAi;t þ α7OWNERi;t þ α8LISTEDi;t þ α9FOREIGNi;t þ α10MERGERi:t þ α11HHIt þ α12RF þ α13GDPt þ εi;t (1) Following Stiroh (2004a), Le (2017c), and Le et al. (2019), two performance measures based on accounting ratios include risk-adjusted returns on equity (RARROE) and risk-adjusted returns on assets (RARROA) are used. RARROEi;t ¼ ROEi;t σROEi ; RARROAi;t ¼ ROAi;t σROAi , where ROE is the returns (profits before tax) on equity, σROE is the standard deviation of returns on equity over the examined period. ROA is the returns (profits before tax) on total assets, σROA is the standard deviation of returns on assets Following Stiroh (2004a), Le (2017c), and Le et al. (2019), two performance measures based on accounting ratios include risk-adjusted returns on equity (RARROE) and risk-adjusted returns on assets (RARROA) are used. RARROEi;t ¼ ROEi;t σROEi ; RARROAi;t ¼ ROAi;t σROAi , where ROE is the returns (profits before tax) on equity, σROE is the standard deviation of returns on equity over the examined period. ROA is the returns (profits before tax) on total assets, σROA is the standard deviation of returns on assets Page 7 of 21 Page 7 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 over the examined period.13 In this study, RARROE is our main dependent variable as indicated in Section 4 and RARROA is used as a robust check as shown in Appendix 2. over the examined period.13 In this study, RARROE is our main dependent variable as indicated in Section 4 and RARROA is used as a robust check as shown in Appendix 2. For explanatory variables as indicated in Table 1, π t-1 is used to measure the persistence of profits in the industry. Nonetheless, as discussed in section 2, this has seldom been included in studies of multimarket contact. Following Kasman and Kasman (2016), GEODIV is used to control for the effect of geographic diversification. GEODIVi ranges from 0 to 1 and is equal to 1 if a bank is diversified. MMC is the multimarket variable computed following the procedure described in Appendix 1.14 This allows us to test the mutual forbearance hypothesis that may exist if banks are less incentive to compete aggressively because of the threat of punishment by their rival in other common markets. The above arguments suggest the application of a dynamic model that takes the following form: INEFF is used to test the efficiency channel and derived from the bootstrap DEA under variable returns to scale assumption as proposed by Simar and Wilson (1998; 2000)). This approach measures how well the observed bank manages its costs to the best-practice bank in the sample.15 We also employ two alternative proxies for risk, namely LLP as a measure of credit risk and EATA as a measure of bank capitalization. Following Le (2020b) and Le et al. (Forthcoming), OWNER is used to control for the effect of bank ownership. Additionally, the increasing role of privatization, and in particular diffused ownership, is investigated by incorporating LISTED in the model. FOREIGN is used to control for the effect of foreign ownership.16 We further use the interaction terms to extend the role of bank ownership in investigating the relationship between multimarket contacts and bank profitability as follows17: πi;t ¼ α0 þ α1πi;t1 þ α2MMCi;t þ α3GEODIVi;t þ α4INEFFi;t þ α5LLPi;t þ α6EQTAi;t þ α7OWNERi;t þ α8LISTEDi;t þ α9FOREIGNi;t þ α10MERGERi:t þ α11MMCi;t  OWNERi;t þ α12MMCi;t  LISTEDi;t þ α13MMCi;t  FOREIGNi;t þ α14MMCi;t  MERGERi:t þ α15HHIt þ α16RF þ α17GDPt þ εi;t (2 πi;t ¼ α0 þ α1πi;t1 þ α2MMCi;t þ α3GEODIVi;t þ α4INEFFi;t þ α5LLPi;t þ α6EQTAi;t þ α7OWNERi;t þ α8LISTEDi;t þ α9FOREIGNi;t þ α10MERGERi:t þ α11MMCi;t  OWNERi;t þ α12MMCi;t  LISTEDi;t þ α13MMCi;t  FOREIGNi;t þ α14MMCi;t  MERGERi:t þ α15HHIt þ α16RF þ α17GDPt þ εi;t (2 (2) 4.1. The base models For ease of exposition, we focus on the general interpretation of key variables. In general, there appears a negative relationship between multimarket contacts and bank profitability as shown in Table 3. Also, MMC2 is highly correlated to MMC1, confirming the validity of this alternative proxy. MMC3 is weakly correlated to MMC1 and MMC2, indicating that the variable weaknesses as an alternative proxy form of MMC.18 Furthermore, there is a high correlation between MMC3 and GEODIV so we run them in a separate model. Because of the high potential endogeneity between variables used as explained above, the system GMM should be employed. Table 4 indicates the results of the impact of multimarket contacts on bank profitability in the Vietnamese banking system between 2006 and 2015 using the system GMM.19 The result of the Hansen test is also reported to investigate the validity of the dynamic panel model. Since the p-value of the Hansen test is statistically not significant in any of the models, the null hypothesis cannot be rejected.20 Therefore, there is no evidence of over-identifying restrictions, which means that all conditions for the moments are satisfied and the instruments are accepted. Furthermore, the hypothesis of the non-existence of the first-order autocorrelation between the first residual differ­ ences is rejected. This, however, does not imply that estimates are inconsistent. Inconsistency would be concluded if the second-order autocorrelation is present (Arellano & Bond, 1991). Since p-values of AR2 in our all models are statistically not significant, this suggests that the moment conditions of the model are met.21 As a result, we conclude that the estimated model meets diagnostic tests. A number of the regression models are run. Table 4 indicates that the coefficient of π t-1 is positive and significant in all models, suggesting the persistence in bank profitability. Besides, two out of three measures of multimarket contacts (MMC1 and MMC2) are in general negatively and significantly associated with bank profitability, implying that higher contacts among banks may Page 8 of 21 Page 8 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 3. 4.1. The base models Correlation matrix of variables used in this study RARROE RARROA MMC1 MMC2 MMC3 GEODIV INEFF LLP EQTA LNBR HHI GDP RARROE 1 RARROA 1 MMC1 −0.078 −0.094 1 MMC2 −0.085 −0.102 0.993 1 MMC3 0.184 0.129 0.517 0.459 1 GEODIV 0.067 0.028 0.577 0.530 0.831 1 INEFF −0.000 −0.000 −0.071 −0.057 −0.136 −0.1 1 LLP −0.062 −0.025 0.346 0.342 0.303 0.282 −0.129 1 EQTA −0.097 −0.010 −0.487 −0.487 −0.359 −0.283 −0.06 −0.172 1 HHI 0.092 0.123 −0.294 −0.326 0.243 0.297 0.135 −0.11 0.146 −0.22 1 GDP 0.124 0.084 −0.082 −0.103 0.235 0.154 −0.098 −0.070 −0.042 −0.088 0.491 1 Table 3. Correlation matrix of variables used in this study RARROE RARROA MMC1 MMC2 MMC3 GEODIV INEFF LLP EQTA LNBR HHI GDP RARROE 1 RARROA 1 MMC1 −0.078 −0.094 1 MMC2 −0.085 −0.102 0.993 1 MMC3 0.184 0.129 0.517 0.459 1 GEODIV 0.067 0.028 0.577 0.530 0.831 1 INEFF −0.000 −0.000 −0.071 −0.057 −0.136 −0.1 1 LLP −0.062 −0.025 0.346 0.342 0.303 0.282 −0.129 1 EQTA −0.097 −0.010 −0.487 −0.487 −0.359 −0.283 −0.06 −0.172 1 HHI 0.092 0.123 −0.294 −0.326 0.243 0.297 0.135 −0.11 0.146 −0.22 1 GDP 0.124 0.084 −0.082 −0.103 0.235 0.154 −0.098 −0.070 −0.042 −0.088 0.491 1 Page 9 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 4. 4.1. The base models 20), 8: 1849981 2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 π RARROE Hansen test (p- value) 0.941 0.981 0.977 0.992 0.581 0.645 0.886 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. lower bank profitability. This somewhat does not support the mutual forbearance hypothesis for the Vietnamese banking system that multimarket contacts do not affect the potential for collusion in the local markets that banks enter. Also, it seems clear that geographic diversification (GEODIV) is usually negative and significant. This implies that smaller and less diversified banks often have an established reputation in the local community and a specific (and long-term) knowledge of local consumers which cannot easily be imitated by competitors. Nonetheless, this somewhat supports the findings of Le et al. (2020) who suggest that global expansions tend to reduce bank risk-adjusted-performance. Concerning cost management, the coefficient of INEFF is generally negative and significant, suggesting that more efficient banks can utilize their loanable resources effectively, thus enhancing their profitability. This supports the earlier findings of Berger (1995) in the US and Sharma et al. (2013) in Fiji. When observing the risk channel using LLP, we find that, as expected when significant it appears to reduce profits. This is in line with the findings of Le (2018) in Vietnam who found that banks with greater credit risk have lower performance. The same sign is also true for bank capitalization (EQTA). This implies that a higher level of bank capital ratio may prevent banks from benefiting from alternative profitable opportunities. Regarding bank ownership, the coefficient of OWNER is positive and significant, suggesting that SOCBs are more profitable than POCBs. This is in line with the findings of Le and Nguyen (2020b). This can be explained by two main reasons. Firstly, SOCBs have benefited from government subsidies. Second, SOCBs are usually considered as safe banks because of their government own­ ership in the Vietnamese banking system. Consequently, depositors are willing to accept lower deposit interest rates offered by SOCBs, thus enhancing their profitability (Le et al., 2019). 4.1. The base models The results of the impact of multimarket contacts on bank profitability in Vietnam using RARROE π RARROE π t-1 0.252*** 0.272*** 0.278*** 0.247*** 0.593*** 0.419*** 0.237*** (0.044) (0.071) (0.04) (0.058) (0.131) (0.074) (0.042) MMC1 −0.077*** −0.091** (0.013) (0.042) MMC2 −0.066*** −0.199*** (0.022) (0.052) MMC3 0.345 1.025 (0.795) (1.383) GEODIV −9.979*** −31.347*** −14.351*** −20.376* −20.73*** (2.593) (8.864) (4.313) (10.275) (2.465) INEFF −3.376*** −0.874 −1.679*** −0.792 −11.964*** −5.521*** −2.402*** (0.812) (1.093) (0.534) (0.918) (4.228) (1.32) (0.424) LLP −13.55* −2.673 −13.362 1.272 −53.456** −6.214 −11.11** (7.053) (6.166) (8.881) (11.442) (25.661) (13.236) (5.121) EQTA −7.509*** −7.555*** −7.852*** −6.088*** −3.763 −8.51*** −8.544*** (1.939) (2.084) (1.945) (1.802) (3.796) (2.425) (1.866) OWNER 0.666 −1.187 3.36*** 1.554 −1.235 −1.058 1.23** * (0.478) (1.816) (0.773) (1.746) (1.507) (0.812) (0.337) LISTED 2.485*** 5.469*** 2.146*** 5.741*** 0.639 3.552** 1.152*** (0.464) (1.906) (0.552) (2.075) (1.541) (1.359) (0.419) FOREIGN −7.659 −3.238 −15.702*** 3.417 −25.345** −17.389* −11.848*** (5.282) (11.143) (3.613) (11.83) (10.892) (9.251) (3.413) MERGER −1.382* −6.007*** 1.153 −6.022*** −8.533*** −1.908 −1.727*** (0.786) (1.336) (0.768) (1.839) (2.913) (2.221) (0.556) MMC*OWNER 0.066 −0.049 −0.049 (0.05) (0.074) (1.373) MMC*LISTED −0.127* −0.107 −3.106** (0.073) (0.083) (1.286) MMC*FOREIGN 0.29 0.534 36.77*** (0.404) (0.544) (13.127) MMC*MERGER 0.268*** 0.316*** −6.232 (0.058) (0.081) (14.154) HHI 15.864*** 24.399** 13.8741** 18.023* −7.088 0.008 6.533* (4.653) (10.216) (6.291) (9.751) (8.923) (4.521) (3.636) RF 0.202 −0.027 0.075 0.029 0.023 −0.679** −0.581*** (0.126) (0.2) (0.136) (0.216) (0.339) (0.267) (0.099) GDP −0.964 2.166 −6.499 9.249 −3.836 −18.067*** −4.495 (4.055) (9.335) (6.259) (0.296) (28.475) (6.5) (3.929) Constant 3.53*** 3.979*** 4.2*** 3.429*** 5.824*** 4.483*** 5.354*** (0.364) (1.044) (0.43) (1.003) (1.922) (1.101) (0.354) No. Obs 278 278 278 278 278 278 278 No. Groups 41 41 41 41 41 41 41 AR1 (p-value) 0.001 0.002 0.001 0.001 0.002 0.001 0.000 AR2 (p-value) 0.926 0.622 0.894 0.452 0.744 0.526 0.745 (Continued) Table 4. The results of the impact of multimarket contacts on bank profitability in Vietnam using RAR Page 10 of 21 π RARROE Hansen test (p- value) 0.941 0.981 0.977 0.992 0.581 0.645 0.886 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. 4.1. The base models LISTED is positively and significantly associated with bank profitability, indicating that listed banks are more profitable than non-listed banks. Because shareholders have their capital at risk at the bank, they have more incentive to monitor its management to ensure the bank operates effectively. As a result, listed banks may have better asset quality which ultimately improves their profitability. Listed banks also may have easier access to funds, thus, lowering the cost of borrowing funds and enhancing their profitability. It is true for the case of the Vietnamese banking system where there is a lack of transparency.22 Listed banks seem to prefer by depositors and investors because they must follow the regulations of the stock market regarding disclosure of their operating activities. The findings also indicate that the coefficient of FOREIGN is generally negative and significant, suggesting that foreign ownership seems to reduce bank profitability. A possible explanation is that they may seek growth opportunities so they may invest higher-risk assets. Nonetheless, this supports the findings of Naaborg and Lensink (2008) in transition economies. When looking at the effect of bank consolidation, MERGER is generally negatively and significantly related to bank profitability, implying that newly combined banks are less profitable than non-merged peers.23 The possible reason is that M&As increase operating costs in the short-term for a consolidated bank, thus reducing their profitability. When examining the effect of interaction between bank ownership and multimarket contacts, the findings show that the coefficient of MMC*LISTED is negative and significant, suggesting that listed Page 11 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 banks seem to aggressively compete with their competitors in other local markets where they operate to gain market shares. Thus, this may affect their profit adversely. However, MMC*MERGER is found to affect bank profitability positively. This may reflect that newly combined banks with greater contacts seem to pursue the collusion strategy in the short-term post-merger. The same result is obtained in the case of the interaction between MMC and FOREIGN, demonstrating that foreign-owned banks with higher multimarket contacts tend to collude due to the fear of retaliation by banks engaged in other markets. This may reflect the fact that the cap of total shares of foreign investors in a local bank may limit their ability to transfer technology and bring in capital infusion. Hence, they may not compete against their competitors aggressively in many markets. 4.1. The base models Last, the findings show a positive relationship between market concentration (HHI) and bank profitability. This implies banks that operate in an increasingly competitive market tend to earn less profit. Nonetheless, this finding is in line with those of Mirzaei et al. (2013) and Le (2020a). Note that this also suggests that the increasing concentration in the Vietnamese banking system does not necessarily reflect a reduced competition itself and even competition may be more intense in some provinces where oligopolies prevail. The coefficients of GDP and RF are not significant in most of our base models. Nonetheless, a negative relationship between GDP and bank profitability supports the early findings of Tan and Floros (2012) in China. There also appears a decrease in bank profitability during the restructuring period. Accordingly, banks were required to strict their lending procedure until their bad debts are under control and reviewed by the State Bank of Vietnam as well as increase their capital to meet minimum charter capital requirements. 4.2. Robust checks To provide additional empirical support to our findings, we further test whether a bank’s behavior is affected by an interaction effect between high market concentration and multimarket contact. The coefficient of MMC*HHI is generally negative and significant in 2 models as shown in Table 5. This may suggest banks with greater multimarket contacts that operate in greater market concentra­ tion tend to compete aggressively against their competitors in this market. Nonetheless, this supports the early findings of Mester (1987) who found evidence of pro-competitive effects derived from the combination of high market concentration and high contact. Following Kasman and Kasman (2016) and Le et al. (2019), we then construct a subsample of banks by excluding banks below the lower quartile to provide a robust check as indicated in Table 6. The findings show that the coefficients of MMC1 and MMC2 are negative and significant. Our main findings as above are thus confirmed. We further examine whether the impact of multimarket contacts on bank profitability may differ between small and large banks. Following Le (2019) and Le et al. (2019), large and small banks are defined as those with total assets above and below the median, respectively. Then, LARGE, a dummy variable that takes a value of 1 for a large bank and 0 otherwise is used because the small sample size is employed in the system GMM estimator.24 In general, the data shown in Table 7 indicates that larger banks are less profitable than smaller counterparts. This may be because smaller banks are easier to be managed and their focus is on serving specific regions. The coefficient of MMC*LARGE is positive and significant, suggesting that larger banks with greater multimarket contacts may not aggressively compete against their competitors in common local markets. behavior. When examining the interaction effect of multimarket contacts and bank ownership however we do find evidence of tacit collusion for the case of foreign-owned banks and newly combined banks, especially in the short-term post-merger. Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. 5. Conclusion This study investigated the relationship between multimarket contacts and bank profitability in the Vietnamese banking system between 2006 and 2015 by using the system GMM. Our main results offer in general no evidence of tacit collusion in this sector, thus rejecting the assumption that mutual forbearance affects market conditions through greater multimarket contacts. The study also provides no support to the assumption that similarity among banks facilitates collusive Page 12 of 21 Page 12 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 5. Interaction effect of market concentration and multimarket contact π RARROE RARROE RARROE π t-1 0.339*** 0.304*** 0.545*** (0.052) (0.05) (0.149) MMC1 0.104 (0.082) MMC2 0.015 (0.065) MMC3 3.018 (5.886) GEODIV −3.906 6.706 (6.514) (5.503) INEFF −3.122*** −3.367** −9.716** (0.957) (1.285) (4.778) LLP −14.066** −24.54** −56.391* (6.943) (11.341) (32.814) EQTA −10.412*** −4.171 −3.635 (2.303) (2.895) (3.972) OWNER 1.624* 0.022 −0.681 (0.919) (0.614) (1.619) LISTED 1.086 2.48*** −0.176 (0.722) (0.72) (1.818) FOREIGN −13.245** −5.106 −22.554* (5.545) (5.066) (11.396) MERGER −1.536 −1.893** −8.651*** (1.129) (0.808) (2.767) HHI 12.915 9.465 −2.755 (12.898) (9.595) (12.17) RF −0.609*** −0.68*** 0.076 (0.209) (0.167) (0.359) GDP −4.04 21.268*** 1.286 (7.951) (9.356) (28.306) MMC*HHI −1.602* −1.621*** −26.316 (0.808) (0.439) (54.042) Constant 3.822*** 1.301 4.726** (1.009) (1.204) (2.105) No. Obs 278 278 278 No. Groups 41 41 41 AR1 (p-value) 0.000 0.000 0.013 AR2 (p-value) 0.407 0.160 0.964 Hansen test (p-value) 0.615 0.621 0.410 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. behavior. When examining the interaction effect of multimarket contacts and bank ownership however we do find evidence of tacit collusion for the case of foreign-owned banks and newly combined banks, especially in the short-term post-merger. Page 13 of 21 Page 13 of 21 Page 13 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 6. Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. 5. Conclusion The results of robust checks π RARROE RARROE RARROE π t-1 0.547*** 0.545*** 0.659*** (0.059) (0.059) (0.127) MMC1 ≥ 9 −0.036** (0.017) MMC2 ≥ 9 −0.078** (0.03) MMC3 ≥ 0.07 0.62 (0.497) GEODIV −13.938* −14.247** (6.964) (6.731) INEFF −3.074** −1.884 −6.495* (1.221) (1.17) (3.223) LLP 6.028 15.131 −37.063* (11.807) (13.456) (18.683) EQTA −5.442*** −6.787*** −7.904*** (1.431) (1.933) (2.862) OWNER 2.664*** 2.303** −1.282 (0.96) (1.060) (0.873) LISTED 0.866 1.549** 0.583 (0.567) (0.633) (0.925) FOREIGN −3.177 −1.005 −14.113* (3.252) (3.767) (7.426) MERGER −0.169 −0.358 −3.526** (0.605) (0.608) (1.659) HHI 3.863 7.192 −2.228 (6.8) (8.166) (7.729) RF −0.275** −0.047 −0.164 (0.125) (0.141) (0.256) GDP −7.264 −1.675 −17.989 (10.515) (9.939) (10.678) Constant 3.471*** 3.138*** 4.993*** (0.701) (0.531) (1.524) No. Obs 225 222 207 No. Groups 34 34 32 AR1 (p-value) 0.000 0.000 0.003 AR2 (p-value) 0.202 0.441 0.341 Hansen test (p-value) 0.999 0.998 0.545 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Si ifi 10 5 d 1 l l i l Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. The negative impacts of geographic diversification (GEODIV) and credit risk (LLP) on risk-adjusted returns suggest that more profitable banks are less geographically diversified, and have a lower credit risk. The same is true for state-owned commercial banks and non-merged banks. The findings indicate that efficient banks can generate greater bank profitability, suggesting that bank managers should implement superior management practice in their daily operations and minimize input usage, thus improving bank profitability. Also, listed banks seem more profitable Page 14 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Table 7. Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. 5. Conclusion The relationship between multimarket contacts and bank profitability in a subsample π RARROE RARROE RARROE π t-1 0.359*** 0.446*** 0.557*** (0.052) (0.064) (0.102) MMC1 −0.269*** (0.047) MMC2 −0.274*** (0.053) MMC3 4.513 (4.45) LARGE −3.408*** −2.229*** 0.023 (0.952) (0.753) (1.78) MMC*LARGE 0.236*** 0.222*** −3.22 (0.049) (0.058) (5.246) GEODIV −4.289 −6.266 (6.031) (7.245) INEFF −2.729*** −1.123 −2.79* (1.01) (1.282) (1.477) LLP −3.619 8.301 −19.584* (12.449) (11.308) (11.539) EQTA −11.309*** −14.584*** −7.336* (3.136) (3.547) (3.99) OWNER 0.192 −1.75 −1.74 (0.847) (1.046) (2.126) LISTED 3.739*** 3.157*** 1.133 (0.787) (0.543) (1.892) FOREIGN −6.394 −7.687 −1.172 (4.677) (6.002) (10.272) MERGER −1.792*** −2.289*** −1.199 (0.638) (0.818) (3.925) HHI 10.4 6.931 −6.371 (8.756) (12.297) (23.399) RF 0.116 −0.295* −0.676** (0.172) (0.151) (0.282) GDP −6.534 −5.215 −48.293 (4.6) (8.331) (35.863) Constant 5.908*** 6.522*** 5.59*** (1.189) (0.917) (1.617) No. Obs 278 278 278 No. Groups 41 41 41 AR1 (p-value) 0.03 0.001 0.000 AR2 (p-value) 0.879 0.635 0.268 Hansen test (p-value) 0.976 0.980 0.654 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented th h th GMM d f ll i A ll d B (1995) R b t t d d i th * ** Page 15 of 21 Page 15 of 21 Page 15 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 than non-listed banks, suggesting that local banks should be encouraged to list on the stock market, thus enhancing the transparency of the banking system. Furthermore, a negative impact of capital ratio on bank performance implies that banks with an excessively high capital ratio may ignore opportunities for profitable growth, thus lowering their profits. Foreign-owned banks on average seem less profitable than domestic counterparts. Concerning the macroeconomic factors, our findings support the structure-conduct-performance hypothesis that banks with market power tend to collude to charge high fees on loans and non-traditional activities and lower rates on customer deposits, thus earning higher profits. The study may suffer some limitations. Our study only investigates this link in one country within a limited period, implying that future research needs to examine this relationship in other emer­ ging markets that have a similar banking structure for robust checks. The study may suffer some limitations. Our study only investigates this link in one country within a limited period, implying that future research needs to examine this relationship in other emer­ ging markets that have a similar banking structure for robust checks. Tu Dq Le1,2 Tu Dq Le1,2 11. Another example is that banks with poor manage­ ment may fail to control operating costs, thus lowering bank profitability. The ownership may be also endogenous because investors may decide to invest in riskier banks to maximize their expected utility (Gugler & Weigand, 2003). E-mail: tuldq@uel.edu.vn 1 E-mail: tuldq@uel.edu.vn 1 1 Institute for Development and Research in Banking Technology, University of Economics and Law, Ho Chi Minh City, Vietnam. y 2 Vietnam National University, Ho Chi Minh City, Vietnam. 12. It is assumed that strictly exogenous variables are not correlated to the individual effects while the endogenous variables are predetermined. 12. It is assumed that strictly exogenous variables are not correlated to the individual effects while the endogenous variables are predetermined. Citation information Cite this article as: Multimarket contacts and bank profit­ ability: do diversification and bank ownership matter?, Tu Dq Le, Cogent Economics & Finance (2020), 8: 1849981. g p 13. One of the main reasons for using risk-adjusted returns measure is that the traditional measures completely ignores risk. Since returns can be enhanced by taking more risk, at least in the short run, this is a critical limitation of using traditional measures. Risk-adjusted returns estimates are analogous to a market-derived Sharpe ratio, which defines risk-adjusted returns as market returns (less the risk-free rate) divided by the standard deviation of returns. For further discussion, please see Stiroh (2004a; 2004b) and among others. Besides, our results do not alter when profits after tax is used to measure ROE and ROA in the formula of risk-adjusted returns. Nonetheless, we also use the traditional measures of bank profitability such as average return on assets, the average return on equity, and pre-provision profit. Similar results are obtained although they cannot present here due to the length restrictions. They are available upon request. 13. One of the main reasons for using risk-adjusted returns measure is that the traditional measures completely ignores risk. Since returns can be enhanced by taking more risk, at least in the short run, this is a critical limitation of using traditional measures. Risk-adjusted returns estimates are analogous to a market-derived Sharpe ratio, which defines risk-adjusted returns as market returns (less the risk-free rate) divided by the standard deviation of returns. For further discussion, please see Stiroh (2004a; 2004b) and among others. Besides, our results do not alter when profits after tax is used to measure ROE and ROA in the formula of risk-adjusted returns. Nonetheless, we also use the traditional measures of bank profitability such as average return on assets, the average return on equity, and pre-provision profit. Similar results are obtained although they cannot present here due to the length restrictions. They are available upon request. Acknowledgements Bank, Lien Viet Post Bank, Mekong Development Bank, Military Bank, Nam A Bank, National Citizen Bank, Ocean Bank, Orient Bank, Petrolimex Group Bank, Saigon-Hanoi Bank, Saigon Bank for Industry and Trade, Saigon Commercial Bank, Saigon Thuong Tin Bank, South-East Asia Bank, Southern Bank, TienPhong Bank, Viet A Bank, Technological Bank, Bank for Private Enterprise, Export-Import Bank, Vietnam International Bank, Maritime Bank, Tin Nghia Bank, Western Bank. Bank, Lien Viet Post Bank, Mekong Development Bank, Military Bank, Nam A Bank, National Citizen Bank, Ocean Bank, Orient Bank, Petrolimex Group Bank, Saigon-Hanoi Bank, Saigon Bank for Industry and Trade, Saigon Commercial Bank, Saigon Bank, Lien Viet Post Bank, Mekong Development Bank, Military Bank, Nam A Bank, National Citizen Bank, Ocean Bank, Orient Bank, Petrolimex Group Bank, Saigon-Hanoi Bank, Saigon Bank for Industry and Trade, Saigon Commercial Bank, Saigon Thuong Tin Bank, South-East Asia Bank, Southern Bank, TienPhong Bank, Viet A Bank, Technological Bank, Bank for Private Enterprise, Export-Import Bank, Vietnam International Bank, Maritime Bank, Tin Nghia Bank, Western Bank. This research is funded by the University of Economics and Law, Vietnam National University, Ho Chi Minh, Vietnam. Funding This work was supported by the University of Economics and Law, Vietnam National University - Ho Chi Minh City [N/A]. Notes 1. The average annual economic growth of approxi­ mately 6.2% over the examined period, just behind China. 2. Please see Yu and Cannella (2013) for the review of empirical studies on the impact of multimarket contacts in other industries. 3. Please see Le (2017a) for a more comprehensive overview of the literature on the relationship between bank ownership and profitability. 4. For more discussion, please see Le et al. (2019). 5. Vietnamese commercial banks are encouraged to publish their annual reports but not obliged. 6. Please see Le (2017b). 6. Please see Le (2017b). 7. Unfortunately, the Global Bank Focus does not pro­ vide the data on bank branches. Since 2016, there have been substantial missing data on bank branches in each market. Therefore, we could not calculate the MMC values of the individual bank from the year 2016 and onward. 14. For definitions of the similarity index and weights in calculating two alternative indices, MMC2 and MMC3 are comprehensively presented in Coccorese and Pellecchia (2009). 14. For definitions of the similarity index and weights in calculating two alternative indices, MMC2 and MMC3 are comprehensively presented in Coccorese and Pellecchia (2009). 14. For definitions of the similarity index and weights in calculating two alternative indices, MMC2 and MMC3 are comprehensively presented in Coccorese and Pellecchia (2009). 8. This exclusion from the sample is necessary to ensure the homogeneity of the sample when esti­ mating relative bank efficiency using the bootstrap DEA. More importantly, the data of these banks are mostly unavailable. 15. The procedure is not repeated here for want of space. According to the intermediation approach in which banks act as intermediaries between depositors and borrowers, a 3 × 2 set of inputs and outputs is used. Following prior studies such as Le (2017b), Le et al. (2019) inputs include fixed assets, operating expenses, and loanable funds while out­ puts include loans and other earning assets. Because of the unavailability of data on either a number of employees or labor expenses in many banks in the sample, operating expenses are used to proxy for labor costs. 15. The procedure is not repeated here for want of space. According to the intermediation approach in which banks act as intermediaries between depositors and borrowers, a 3 × 2 set of inputs and outputs is used. Following prior studies such as Le (2017b), Le et al. Bank, Lien Viet Post Bank, Mekong Development Bank, Military Bank, Nam A Bank, National Citizen Bank, Ocean Bank, Orient Bank, Petrolimex Group Bank, Saigon-Hanoi Bank, Saigon Bank for Industry and Trade, Saigon Commercial Bank, Saigon Notes (2019) inputs include fixed assets, operating expenses, and loanable funds while out­ puts include loans and other earning assets. Because of the unavailability of data on either a number of employees or labor expenses in many banks in the sample, operating expenses are used to proxy for labor costs. 15. The procedure is not repeated here for want of space. According to the intermediation approach in which banks act as intermediaries between depositors and borrowers, a 3 × 2 set of inputs and outputs is used. Following prior studies such as Le (2017b), Le et al. (2019) inputs include fixed assets, operating expenses, and loanable funds while out­ puts include loans and other earning assets. Because of the unavailability of data on either a number of employees or labor expenses in many banks in the sample, operating expenses are used to proxy for labor costs. 9. They include Bank for Investment and Development, Foreign Trade Bank, Bank of Industry and Trade, Housing Bank of Mekong Delta, Agriculture and Rural Development Bank. 10. They include An Binh Bank, Asia Bank, Bao Viet Bank, Construction Bank, Dong A Bank, First Bank, Global Petrolimex Bank, Great Asia Bank, Hanoi Building Bank, HCM Development Bank, Kienlong Page 16 of 21 Page 16 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Journal of Financial Services Research, 35(3), 245–271. https://doi.org/10.1007/s10693-009-0057-8 16. To provide robust checks, we also use a dummy variable takes a value of 1 for a local bank that has foreign participation in its capital and 0 otherwise, independently of how large it is. Similar findings are obtained although it cannot be presented here due to length restrictions. Coccorese, P., & Pellecchia, A. (2013). Multimarket con­ tact, competition and pricing in banking. Journal of International Money and Finance, 37, 187–214. https://doi.org/10.1016/j.jimonfin.2013.06.010 17. We thank an anonymous referee for this clarification. De Bonis, R., & Ferrando, A. (2000). The Italian banking structure in the 1990s: Testing the multimarket con­ tact hypothesis. Economic Notes, 29(2), 215–241. https://doi.org/10.1111/1468-0300.00031 18. We thank an anonymous referee for this suggestion. 19. We also conduct robustness checks with more rudimentary approaches for panel data using fixed effects. The results confirm our main findings and are available upon request. Degl’Innocenti, M., Girardone, C., & Torluccio, G. (2014). Diversification, multimarket contacts and profits in the leasing industry. Journal of International Financial Markets, Institutions and Money, 31, 231–252. https:// doi.org/10.1016/j.intfin.2014.04.001 20. References Figlewski, S., Frydman, H., & Liang, W. (2012). Modeling the effect of macroeconomic factors on corporate default and credit rating transitions. International Review of Economics & Finance, 21(1), 87–105. https://doi.org/10.1016/j.iref.2011.05.004 Acharya, V. V., Hasan, I., & Saunders, A. (2006). Should banks be diversified? Evidence from individual bank loan portfolios. The Journal of Business, 79(3), 1355–1412. https://doi.org/10.1086/500679 Arellano, M., & Bond, S. (1991). Some tests of specification for panel data: Monte Carlo evidence and an appli­ cation to employment equations. The Review of Economic Studies, 58(2), 277–297. https://doi.org/10. 2307/2297968 Gimeno, J., & Woo, C. Y. (1999). Multimarket contact, economies of scope, and firm performance. Academy of Management Journal, 42(3), 239–259. https://doi. org/10.5465/256917 Gugler, K., & Weigand, J. (2003). Is ownership really endogenous? Applied Economics Letters, 10(8), 483–486. https://doi.org/10.1080/ 1350485032000095357 Arellano, M., & Bover, O. (1995). Another look at the instrumental variable estimation of error-components models. Journal of Econometrics, 68(1), 29–51. https:// doi.org/10.1016/0304-4076(94)01642-D Hannan, T. H., & Prager, R. A. (2004). The competitive implications of multimarket bank branching. Journal of Banking & Finance, 28(8), 1889–1914. https://doi. org/10.1016/j.jbankfin.2003.06.006 Athanasoglou, P. P., Brissimis, S. N., & Delis, M. D. (2008). Bank-specific, industry-specific and macroeconomic determinants of bank profitability. Journal of International Financial Markets, Institutions and Money, 18(2), 121–136. https://doi.org/10.1016/j. intfin.2006.07.001 Kasman, S., & Kasman, A. (2016). Multimarket contact, market power and financial stability in the Turkish banking industry. Empirical Economics, 50(2), 361–382. https://doi.org/10.1007/s00181-015-0936-9 Berger, A. N. (1995). The profit-structure relationship in banking: Tests of market-power and efficient-structure hypotheses. Journal of Money, Credit and Banking, 27(2), 404–431. https://doi.org/ 10.2307/2077876 Le, T. D. (2017a). The determinants of commercial bank profitability in Vietnam. Working Paper. University of Economics and Law. Le, T. D. (2017b). The efficiency effects of bank mergers: An analysis of case studies in Vietnam. Risk Governance & Control, 7(1), 61–70. https://doi.org/10. 22495/rgcv7i1art8 Berger, A. N., Dick, A. A., Goldberg, L. G., & White, L. J. (2007). Competition from large, multimarket firms and the performance of small, single-market firms: Evidence from the banking industry. Journal of Money, Credit and Banking, 39(2/3), 331–368. https:// doi.org/10.1111/j.0022-2879.2007.00028.x Le, T. D. (2017c). The interrelationship between net interest margin and non-interest income: Evidence from Vietnam. International Journal of Managerial Finance, 13(5), 521–540. https://doi.org/10.1108/ IJMF-06-2017-0110 Bolarinwa, S. T., & Obembe, O. B. (2017). Concentration– profitability nexus: New approach from causality. Studies in Microeconomics, 5(1), 84–98. https://doi. org/10.1177/2321022217695993 Le, T. D. (2018). Notes Cameron and Pravin (2010) suggest that the value of Hansen test for over-identifying restrictions should exceed 0.05, thus the null hypothesis cannot be rejected. Alternatively, there is no correlation between the instrument variables and the residuals. DeLong, G. L. (2001). Stockholder gains from focusing versus diversifying bank mergers. Journal of Financial Economics, 59(2), 221–252. https://doi.org/10.1016/ S0304-405X(00)00086-6 21. Arellano and Bond (1991) demonstrate p-values of AR2 above 0.05 that instruments are still valid. 21. Arellano and Bond (1991) demonstrate p-values of AR2 above 0.05 that instruments are still valid. 22. Vietnamese commercial banks are encouraged to publish their annual reports but not obliged. 22. Vietnamese commercial banks are encouraged to publish their annual reports but not obliged. Deng, S. E., & Elyasiani, E. (2008). Geographic diversifi­ cation, bank holding company value, and risk. Journal of Money, Credit and Banking, 40(6), 1217–1238. https://doi.org/10.1111/j.1538-4616. 2008.00154.x 23. Non-merged banks include those which are not engaged in any M&A activity and those which are merging banks during the pre-merger period. Dietrich, A., & Wanzenried, G. (2014). The determinants of commercial banking profitability in low-, middle-, and high-income countries. The Quarterly Review of Economics and Finance, 54(3), 337–354. https://doi. org/10.1016/j.qref.2014.03.001 24. Initially, we considered several measures of bank size (the natural logarithm of total assets, the natural logarithm of bank branches, and LARGE) in our base models. There appear high correlations between these measures and MMC variables, EQTA (>0.7). Therefore, these measures of bank size are excluded from our base model. Edwards, C. D. (1955). Conglomerate bigness as a source of power business concentration and price policy. Princeton University Press. References Bank risk, capitalisation and technical efficiency in the Vietnamese banking system. Australasian Accounting Business & Finance Journal, 12(3), 42–61. https://doi.org/10.14453/aabfj.v12i3.4 Cameron, A. C., & Pravin, K. T. (2010). Microeconometrics using Stata, revised edition (2nd revised ed.). Stata Press. Le, T. D. (2019). The interrelationship between liquidity creation and bank capital in Vietnamese banking. Coccorese, P., & Pellecchia, A. (2009). Multimarket contact and profitability in banking: Evidence from Italy. Page 17 of 21 Page 17 of 21 Page 17 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Banking & Finance, 37(8), 2920–2937. https://doi.org/ 10.1016/j.jbankfin.2013.04.031 Managerial Finance, 45(2), 331–347. https://doi. org/10.1108/MF-09-2017-0337 Le, T. D. (2020a). The interrelationship among bank profit­ ability, bank stability, and loan growth: Evidence from Vietnam. Cogent Business & Management, 7(1), 1–18. https://doi.org/10.1080/23311975.2020.1840488 Naaborg, I., & Lensink, R. (2008). Banking in transition econo­ mies: Does foreign ownership enhance profitability? The European Journal of Finance, 14(7), 545–562. https://doi. org/10.1080/13518470701322268 Pilloff, S. J. (1999). Multimarket contact in banking. Review of Industrial Organization, 14(2), 163–182. https://doi. org/10.1023/A:1007779814751 Le, T. D. (2020b). Market discipline and the regulatory change: Evidence from Vietnam. Cogent Economics & Finance, 8(1), 1–12. https://doi.org/10.1080/ 23322039.2020.1757801 Rhoades, S. A., & Heggestad, A. A. (1985). Multimarket interdependence and performance in banking: Two tests. The Antitrust Bulletin, 30, 975–995. Le, T. D., & Ngo, T. (2020). The determinants of bank profit­ ability: A cross-country analysis. Central Bank Review, 20 (2), 65–73. https://doi.org/10.1016/j.cbrev.2020.04.001 Saona, P. (2016). Intra-and extra-bank determinants of Latin American Banks’ profitability. International Review of Economics & Finance, 45, 197–214. https:// doi.org/10.1016/j.iref.2016.06.004 Le, T. D., & Nguyen, D. T. (2020a). Capital structure and bank profitability in Vietnam: A quantile regression approach. Journal of Risk and Financial Management, 13(8), 1–17. https://doi.org/10.3390/jrfm13080168 Sharma, P., Gounder, N., & Xiang, D. (2013). Foreign banks, profits, market power and efficiency in PICs: Some evidence from Fiji. Applied Financial Economics, 23 (22), 1733–1744. https://doi.org/10.1080/09603107. 2013.848026 Le, T. D., & Nguyen, D. T. (2020b). Intellectual capital and bank profitability: New evidence from Vietnam. Working Paper. University of Economics and Law, Institute for Development and Research in Banking Technology. Simar, L., & Wilson, P. W. (1998). Sensitivity analysis of efficiency scores: How to bootstrap in nonparametric frontier models. Management Science, 44(1), 49–61. https://doi.org/10.1287/mnsc.44.1.49 Le, T. D., Nguyen, V. T., & Tran, S. H. (2020). Geographic loan diversification and bank risk: A cross-country analysis. Cogent Economics & Finance, 8(1), 1–20. https://doi.org/10.1080/23322039.2020.1809120 Simar, L., & Wilson, P. W. References (2000). A general methodology for bootstrapping in non-parametric frontier models. Journal of Applied Statistics, 27(6), 779–802. https:// doi.org/10.1080/02664760050081951 Le, T. D., Tran, S. H., & Nguyen, L. T. (2019). The impact of multimarket contacts on bank stability in Vietnam. Pacific Accounting Review, 31(3), 336–357. https://doi. org/10.1108/PAR-04-2018-0033 Stiroh, K. J. (2004a). Diversification in banking: Is noninterest income the answer? Journal of Money, Credit, and Banking, 36(5), 853–882. https://doi.org/10.1353/mcb. 2004.0076 Le, T. D., Tran, S. H., & Nguyen, L. T. (Forthcoming). Loan loss provisions, earnings management, capital man­ agement, and signalling: The case of Vietnamese banks. Afro-Asian Journal of Finance and Accounting. Stiroh, K. J. (2004b). Do community banks benefit from diversification? Journal of Financial Services Research, 25(2–3), 135–160. https://doi.org/10.1023/B:FINA. 0000020657.59334.76 Lin, X., & Zhang, Y. (2009). Bank ownership reform and bank performance in China. Journal of Banking & Finance, 33(1), 20–29. https://doi.org/10.1016/j.jbank fin.2006.11.022 Tan, Y., & Floros, C. (2012). Bank profitability and GDP growth in China: A note. Journal of Chinese Economic and Business Studies, 10(3), 267–273. https://doi.org/ 10.1080/14765284.2012.703541 Mester, L. J. (1987). Multiple market contact between savings and loans: Note. Journal of Money, Credit and Banking, 19(4), 538–549. https://doi.org/10.2307/1992620 Whalen, G. W. (1996). Nonlocal concentration, multimar­ ket linkages, and interstate banking. The Antitrust Bulletin, 41(2), 365–397. Miller, S. M., & Noulas, A. G. (1997). Portfolio mix and large-bank profitability in the USA. Applied Economics, 29(4), 505–512. https://doi.org/10.1080/ 000368497326994 Yu, T., & Cannella, A. A. (2013). A comprehensive review of multimarket competition research. Journal of Management, 39(1), 76–109. https://doi.org/10.1177/ 0149206312462456 Mirzaei, A., Moore, T., & Liu, G. (2013). Does market structure matter on banks’ profitability and stability? Emerging vs. advanced economies. Journal of Appendix 1 Following Coccorese and Pellecchia (2009), the MMC variable is computed as follows: MMC1i ¼ ∑iÞj mijγij ∑iÞj γij (3) MMC1i ¼ ∑iÞj mijγij ∑iÞj γij (3) where γij ¼ 1 if mij>0; and γij ¼ 0 if mij ¼ 0. mij represents the number of contacts between bank i and j. γij ¼ 0 means bank i does not contact with bank j. In this study, the province is considered as the local market. The MMC1 index lies between 1 and a total number of local markets which is 63. MMC1 equals 1 in the case of single-market banks. However, not every rival can have the same importance for a bank. For robust checks, two other indices of multimarket contacts are estimated. MMC2, the number of contacts between two banks is weighted by an index measuring their similarity in terms of market shares in all local markets where they meet each other. MMC2i ¼ ∑iÞj mijγij ∑iÞj γij (4) where γij ¼ 1 if mij > 0; and γij ¼ 0 if mij ¼ 0 MMC2i ¼ ∑iÞj mijγij ∑iÞj γij (4) where γij ¼ 1 if mij > 0; and γij ¼ 0 if mij ¼ 0 MMC2i ¼ ∑iÞj mijγij ∑iÞj γij (4) where γij ¼ 1 if mij > 0; and γij ¼ 0 if mij ¼ 0 where γij ¼ 1 if mij > 0; and γij ¼ 0 if mij ¼ 0 The literature suggests that the symmetry among banks can increase their collusion. The incentive of collusion may depend upon the size of the rival. MMC3 is calculated when taking into account the size of the rival as follows: MMC3i ¼ ∑iÞj ijγij ∑iÞj γij (5) where γij ¼ 1 if ij>0, and γij ¼ 0 if ij ¼ 0 MMC3i ¼ ∑iÞj ijγij ∑iÞj γij (5) where γij ¼ 1 if ij>0, and γij ¼ 0 if ij ¼ 0 where γij ¼ 1 if ij>0, and γij ¼ 0 if ij ¼ 0 MMC2 and MMC3 indicate that the increase in the similarity of the banks should improve the impact of multimarket contacts. Page 19 of 21 Page 18 of 21 Page 18 of 21 Page 18 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Page 19 of 21 Page 19 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Appendix 2 Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 π Model 1 Model 2 Model 3 Model 4 Model 5 Model 6 Model 7 AR2 (p-value) 0.363 0.281 0.202 0.278 0.302 0.289 0.299 Hansen test (p-value) 0.704 0.583 0.638 0.649 0.744 0.564 0.529 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. π Model 1 Model 2 Model 3 Model 4 Model 5 Model 6 Model 7 AR2 (p-value) 0.363 0.281 0.202 0.278 0.302 0.289 0.299 Hansen test (p-value) 0.704 0.583 0.638 0.649 0.744 0.564 0.529 Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. Notes: The table contains the results estimated using the system GMM estimator. Variables in italics are instrumented through the GMM procedure following Arellano and Bover (1995). Robust standard errors are in parentheses. *, **, ***Significant at 10, 5, and 1 per cent levels, respectively. © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. You are free to: Share — copy and redistribute the material in any medium or format. Adapt — remix, transform, and build upon the material for any purpose, even commercially. The licensor cannot revoke these freedoms as long as you follow the license terms. Under the following terms: Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. No additional restrictions You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits. © 2020 The Author(s). Appendix 2 results of the impact of multimarket contacts on bank profitability in Vietnam using RARROA The results of the impact of multimarket contacts on bank profitability in Vietnam using RARR The results of the impact of multimarket contacts on bank profitability in Vietnam using RARROA π Model 1 Model 2 Model 3 Model 4 Model 5 Model 6 Model 7 π t-1 0.214*** 0.363*** 0.21*** 0.362*** 0.611*** 0.589*** 0.239*** (0.079) (0.134) (0.069) (0.128) (0.11) (0.099) (0.052) MMC1 −0.002 0.072 (0.028) (0.067) MMC2 −0.006 −0.008 (0.033) (0.063) MMC3 1.303 4.938 (0.866) (3.261) GEODIV −10.646*** −13.76** −9.647*** −11.818* −8.021* (3.245) (5.335) (3.5) (6.322) (4.719) INEFF −1.841*** −1.693 −1.414** −1.259 −4.243 −3.151** −2.499*** (0.667) (1.234) (0.641) (1.339) (5.014) (1.382) (0.832) LLP 10.3 3.78 14.661 8.204 −19.625 −19.299** 27.968*** (9.314) (11.111) (9.875) (14.986) (37.641) (8.965) (7.883) EQTA 2.531 7.56 3.016 6.592 −0.002 5.979** −0.162 (2.398) (5.051) (2.519) (4.333) (3.367) (2.402) (2.942) OWNER 2.368*** 1.222 2.397*** 2.015 −1.386 0.561 1.854*** (0.37) (1.395) (0.519) (1.339) (1.204) (1.641) (0.387) LISTED −1.895 3.628 −1.675 2.396 1.077 3.07 −0.556 (1.217) (2.229) (1.03) (2.132) (1.121) (1.965) (0.405) FOREIGN −6.987* 0.645 −1.024 −0.133 −6.739 34.466 −5.931 (3.867) (10.381) (5.09) (14.698) (9.648) (28.149) (4.191) MERGER −1.668** −4.605** −1.45** −4.607*** −4.367 −13.711* −2.851*** (0.705) (1.77) (0.664) (1.585) (2.902) (8.101) (1.011) MMC*OWNER 0.069* 0.036 −3.262 (0.039) (0.045) (3.316) MMC*LISTED −0.212** −0.145 −3.032 (0.081) (0.088) (1.939) MMC*FOREIGN −0.286 0.208 −44.549 (0.476) (0.657) (44.071) MMC*MERGER 0.155 0.158* 30.093 (0.103) (0.089) (29.549) HHI 3.026 20.73* 4.688 15.773 −3.158 −0.037 −1.202 (5.808) (11.016) (6.39) (10.553) (6.289) (6.604) (6.279) RF −0.02 −0.171 −0.3128 −0.075 −0.148 0.003 −0.25 (0.203) (0.29) (0.164) (0.246) (0.415) (0.272) (0.175) GDP 12.404** 15.243 16.297** 19.674 −9.972 −24.959 10.914 (6.048) (12.03) (6.798) (11.827) (2.249) (22.289) (8.322) Constant 2.092** −1.584 1.31 −0.712 2.463 −0.567 2.299** (0.919) (2.22) (1.003) (1.833) (2.249) (1.466) (1.094) No. Obs 278 278 278 278 278 278 278 No. Groups 41 41 41 41 41 41 41 AR1 (p-value) 0.001 0.010 0.001 0.000 0.002 0.004 0.000 (Continued) π Model 1 Model 2 Model 3 Model 4 Model 5 Model 6 Model 7 Page 20 of 21 Le, Cogent Economics & Finance (2020), 8: 1849981 https://doi.org/10.1080/23322039.2020.1849981 π Model 1 Model 2 Model 3 Model 4 Model 5 Model 6 Model 7 AR2 (p-value) 0.363 0.281 0.202 0.278 0.302 0.289 0.299 Hansen test (p-value) 0.704 0.583 0.638 0.649 0.744 0.564 0.529 Notes: The table contains the results estimated using the system GMM estimator. Appendix 2 This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license. You are free to © 2020 The Author(s). This open access article is distributed under a Creative Commons Attribution (CC-BY) 4.0 license Adapt — remix, transform, and build upon the material for any purpose, even commercially. The licensor cannot revoke these freedoms as long as you follow the license terms. g Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. No additional restrictions You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits. Cogent Economics & Finance (ISSN: 2332-2039) is published by Cogent OA, part of Taylor & Francis Group. Publishing with Cogent OA ensures: • Immediate, universal access to your article on publication • High visibility and discoverability via the Cogent OA website as well as Taylor & Francis Online • Download and citation statistics for your article • Rapid online publication • Input from, and dialog with, expert editors and editorial boards • Retention of full copyright of your article • Guaranteed legacy preservation of your article • Discounts and waivers for authors in developing regions Submit your manuscript to a Cogent OA journal at www.CogentOA.com Cogent Economics & Finance (ISSN: 2332-2039) is published by Cogent OA, part of Taylor & Francis Group. Publishing with Cogent OA ensures: • Immediate, universal access to your article on publication • High visibility and discoverability via the Cogent OA website as well as Taylor & Francis Online • Download and citation statistics for your article • Rapid online publication • Input from, and dialog with, expert editors and editorial boards • Retention of full copyright of your article • Guaranteed legacy preservation of your article • Discounts and waivers for authors in developing regions Submit your manuscript to a Cogent OA journal at www.CogentOA.com Page 21 of 21 cis Online Page 21 of 21
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The Effects of Extensive Journal Writing on the Vietnamese High-School Students’ Writing Accuracy and Fluency
Journal of language and education
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Pham, V. P. H., Tran, T. T. T., & Nguyen, N. H. V. (2022). The Effects of Extensive Journal Writing on the Vietnamese High-School Students’ Writing Accuracy and Fluency. Journal of Language and Education, 8(1), 117-129.  https://doi. org/10.17323/jle.2022.12361 Pham, V. P. H., Tran, T. T. T., & Nguyen, N. H. V. (2022). The Effects of Extensive Journal Writing on the Vietnamese High-School Students’ Writing Accuracy and Fluency. Journal of Language and Education, 8(1), 117-129. https://doi. org/10.17323/jle.2022.12361 Journal of Language & Education Volume 8, Issue 1, 2022 Recived: May 2, 2021 Accepted: Feb 26, 2022 Published: Mar 31, 2022 Vu Phi Ho Pham1 , Tuyen Thi Thanh Tran2 , Ngoc Hoang Vy Nguyen1 1 Van Lang University 2 Tap Son High School Correspondence concerning this article should be addressed to Vu Phi Ho Pham, Faculty of Foreign Languages, Van Lang University, 69/68 Dang Thuy Tram St., Ward 13, Binh Thanh Dist., Ho Chi Minh City, Vietnam. E-mail: ho.pvp@vlu.edu.vn Background: The innovation of an extensive journal writing approach has made a big difference in the field of teaching academic writing. Previous studies found mixed results relating to whether journal writing could help students enhance their writing accuracy. Purpose: The purpose of the current study is to investigate whether extensive journal writing (EJW) affects EFL high school students’ writing accuracy and fluency in the writing classroom. Method: Sixty students in one of the high schools located in Tra Vinh city participated in the study. The quasi-experimental study was conducted in ten weeks. The participants were divided into two groups, namely the control group and the experimental group. Students’ writing papers, including pre-tests and post-tests, were collected for data analysis. Inter-raters were employed for analytic rating scales and written errors analysis. Results: The results show that extensive journal writing had significant effects on the students’ writing performances compared to those of students in the control group. Additionally, the number of words written in the students’ post-test was increasing. Implication: The current study’s findings were innovative to the body of literature as the EJW could help students enhance their writing performances. Keywords:extensive writing, writing accuracy, writing fluency, journal writing Introduction the appropriate approaches have not been employed sufficiently. Writing is regarded as the most difficult skill to master when opposed to listening, speaking, and reading (Pham & Truong, 2021). The students often encounter difficulties in expressing ideas logically (Pham & Nguyen, 2014; Pham and Do (2021). Second language authors must not only brainstorm and coordinate ideas, but they must also know how to confidently communicate their ideas and their knowledge to readers in a coherent writing product (Richard & Renandya, 2002; Wyrick, 2021). In other words, L2 writers must learn how to choose words, structures, and order ideas for coherence and cohesion. Hyland (2019), Pham (2021a), and Pham, Huyen, and Nguyen (2020) claim that student writers must have drafting and revising techniques when working together in the writing process to improve their writing quality. Even for native language authors, writing is not an easy job. As a result, teaching writing necessitates significant effort on the part of teachers. Pham and Bui (2021) state that teaching writing skills in the Vietnamese context is still problematic to many teachers because The appearance of an extensive journal writing approach (innovative approach) has greatly contributed to the writing teaching area. According to Herder and Clements (2012), this approach is a fluency-first approach, which motivates students to engage in the learning writing process and improves students’ writing fluency. Writing journals or regular writing practices are considered activities to conduct extensive journal writing (Ho & Duong, 2015). Students have opportunities to create their writings without the teacher’s control. There is no interference from the teacher; the students compose writing journals by themselves (free topics, freestyle). Accordingly, several studies investigated the effects of extensive journal writing on high school EFL students’ writing accuracy and fluency. Recently, many scholars (Luu, 2011; Hammond & Derewianka, 2001) argued that it should be essential to provide EFL students with different writing genres This article is published under the Creative Commons Attribution 4.0 International License. Research Article Literature Review According to Yagcioglu (2015), learner autonomy needs more concern from language teachers and learners because it is helpful for students’ daily lives. Autonomy can be understood as the learner’s capacity to control their learning process. Therefore, it depends on each individual’s characteristics, and autonomous degrees will vary from one to another (Benson, 2013). Benson also states that autonomy development can be advantageous for learners in terms of language and social responsibilities, and it will help the learners achieve learning goals better. Advocating its implementation, language teachers take responsibility for creating opportunities to help develop students’ autonomy. Baghi et al. (2016) suggested using journal writing as a practical device to boost autonomous learning among students. This helps facilitate teaching and learning writing (Marefat, 2002). In general, both teachers and students in EFL classrooms pay first attention to writing accuracy (Ho & Duong, 2015). The students’ writing performance is usually assessed by focusing on students’ error identification (Ellis et al., 2008). There have been studies for the sake of increasing students’ writing accuracy (Herder & King, 2012; Puengpipattrakul, 2009; Rokni & Seifi, 2014; Sholah, 2019) and student writing fluency (Herder & Clements, 2012; Herder & King, 2012; Liao & Wong, 2010; Ho & Duong, 2015). The results of these studies were mixed. Some found that journal writing failed to help enhance students’ writing accuracy, but their grammatical performance was better. Regarding writing fluency, most of the research claimed that the writing journal enabled students to write lengthier texts. Journal writing, a kind of extensive journal writing, is supposed to bring learners many potential advantages (Cisero, 2006). Students would have opportunities to perform what they have learned in a meaningful context. This means that students are able to understand what they are doing. They use their prior knowledge to express their feelings or thoughts rather than memorize what they learned. Students utilize their language to contextualize, which provides learners with a natural learning environment. Fulwiler (1982) states that journal writing does not only help students reinforce their learning experience but also promotes students’ creativity. As defined, journal writing can be considered freestyle writing. Writers can apply any genres they want. In other words, they are not required to follow any model that they have learned in the classroom. Research Article 117 VU PHI HO PHAM, TUYEN THI THANH TRAN, NGOC HOANG VY NGUYEN There needs further research to help solve the issues of writing accuracy. Therefore, this study aims to investigate whether extensive journal writing has any effects on the high school students’ writing performances in Tra Vinh city, Vietnam. in addition to narrative writing. According to Richard and Renandya (2002), writing learners need to approach various types of writing in an academic learning context. This allows learners to experience plenty of writing genres, which benefits them in their higher education and career. F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING the students composed longer texts. The study failed to investigate whether the writing journals affected students’ writing quality in terms of accuracy. and a post-test (the final writing papers). The results revealed that the students who wrote their journals improved their grammar and felt more confident when writing in English. This study had a similar limitation to Puengpipattrakul (2009)’s study. Luu’s (2010) study aimed to determine whether students can reduce writing difficulties and promote writing skills by experiencing journal writing activities. The research participants were eighty-five second-year students at the Faculty of English Linguistics and Literature of the University of Social and Humanities in Ho Chi Minh City. The experimental group students had to write extensively in the classroom, journals outside the classroom, and even do homework. Writing tests were used to assess students’ writing proficiency levels. The findings showed that extended journal writing activities might help inspire students’ writing and strengthen the relationship between instructors and students. Though inspiring the students to write was an important factor in helping students overcome their writing difficulties, writing skills should be measured quantitatively to guarantee their improvement. In order to help students improve their writing fluency, Liao and Wong (2010) conducted a study of dialogue journal writing on second language learners’ writing fluency, reflection, and motivation. Forty-one students in grade 10 from a school in Taiwan were invited to be the participants in the study. Each student wrote two journals a week and produced 24 journal entries in total. The researchers utilized qualitative and quantitative data instruments, including pre-tests, post-tests, questionnaires, and interviews. The results illustrated that students’ writing fluency revealed positive changes. Also, students gained higher writing awareness. Another finding of the study was that learners had chances to self-reflect their thoughts by looking back at their journals. Still, helping students’ writing fluency was one of the good ways in the writing classrooms, but writing accuracy should not be out of concern. Herder and King (2012) aimed to identify the effects of extensive journal writing on EFL learners regarding balance, fluency, accuracy, or complexity. The seventy all-girls Catholic high schools in Osaka were grouped into three classes. The researchers designed both qualitative and quantitative methods to serve their study. The research result stated that extensive journal writing was seen as a tool to express ideas and opinions. Therefore, students had a reason to write in a meaningful situation. Literature Review Journal writing is hoped to be a teaching alternative in EFL classrooms because it helps the students conduct more writing practices under the common belief that practice makes perfect. Puengpipattrakul (2009) conducted action research using journal writing to develop grammatical accuracy in writing. The participants were first-year university students from Thailand. The researchers analyzed the data from students’ journal entries and the interview. The findings revealed that the students only improved grammar accuracy. However, the students felt more self-confident in grammar use in terms of verb tenses. Additionally, the students could self-reflect on their grammar points, which gradually enhanced students grammatical accuracy. The current study was limited in helping students enhance their grammar accuracy, not writing quality in general. In Vietnamese high school contexts, Truong and Pham (2017) found that EFL teachers were not successful in facilitating students in the writing classroom. The teachers from eight selected high schools in Ho Chi Minh city considered grammatical features and model text as primary writing concerns. Writing instructions in Vietnamese classes are still in favor of the product writing approach. This kind of practice might limit the students’ creativity in writing and lead to slow writing fluency. Furthermore, Pham and Do’s (2019) findings revealed that when students compose their essays, they usually make errors in four types: tenses, collocations, spellings, and verb forms. In order to see if Journal writing could trigger students to develop writing skills, Rokni and Seifi (2014) conducted a study to examine the efficacy of dialogue journal writing on students’ grammar development and confidence. The experiment was done at Golestan university in Iran. Sixty-eight participants aged from 18 to 23 were randomly chosen to take part in the study. The students devoted 12 sessions to dialogue journal writing. The participants wrote a journal per session during the Spring term. Thus, there were 12 journal entries in total. The data collection instruments were a pre-test (the 1st writing papers) 118 F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING The participants felt their improvement and self-efficacy. Moreover, the findings showed that higher-proficient students tended to turn to complexity when they felt confident in fluency while lower-proficient students focused on accuracy. Also, the learners could write down what they thought quickly when they attained a certain level of confidence. The study failed to measure the students’ writing differences between the different conditions. Herder and Clements (2012) conducted a study investigating the effects of a fluency-first approach (extensive journal writing) on Japanese students’ writing fluency and determining students’ attitudes toward this approach. The students with a two-year writing class (grades 11 and 12) were chosen as the participants in their research. The students in grade 11 took part in ten-minute writing training in a conventional method. In contrast, the twelfth-grade students practiced writing about topics for university exam preparation. The findings showed that students’ writing fluency improved dramatically in terms of writing length and idea expression. Importantly, students found it beneficial for them to develop their self-expression, and they felt more motivated in writing. This study had a similar limitation to Liao and Wong (2010)’s study. Recently, Sholah (2019) conducted a study to see if extensive journal writing could help students overcome difficulties in writing and improve their writing skills. Sixty second-year students, ages 17-18, from the Faculty of English Department Education of the IAI Al-Qolam Gondanglegi participated in the study. They were divided into two groups. The study found that extensive journal writing was effective in helping students’ motivation and significantly enhanced their writing abilities. Extensive journal writing was a reasonable means to build teacher and student communication. The study failed to investigate whether extensive journal writing could impact students’ writing fluency. Ho and Duong (2015) researched to seek the common errors in students’ writing journals and determine the effects of extensive journal writing on students’ writing fluency. One hundred fifteen first-year English major students from the Faculty of Foreign Languages at Ho Chi Minh City university were chosen as the study participants. The study lasted 15 weeks, and each student had to complete five writing journals a week. The study results indicated that most students had four common errors (tenses, collocation, spelling, and verb forms). Teaching Procedures Students in class one (control group) had five writing lessons with different topics (post office, nature, national park, recreation, space) in the textbook (Ministry of Education and Training, 2006) in Semester 2 of the school year 2019-2020. The writing lesson took place every two weeks, and it lasted 45 minutes. The writing activities in the classrooms were similar to those conducted in the experimental group. The writing process approach was employed as the regular curriculum. The lesson usually started with a model text. Then the students worked together in a group to brainstorm ideas about a topic to make an outline. After that, each student composed a paragraph based on the ideas developed in an outline. When the students finished their writing, they shared their papers with their group members to do the peer feedback activities. According to Bitchener (2008), those students who received peer feedback would improve their writing accuracy. The revising stage was conducted at home to hand to the teacher at the subsequent class meeting. Then the teacher gave feedback on the student’s paper. The students in the control group were encouraged to do writing exercises in the textbook at home. Materials and Methods Students in class two (experimental group) also studied the same textbook with the same topics (post office, nature, national park, recreation, space) and took the same steps as the control group. Every two weeks, a writing session was conducted in the classroom for 45 minutes. The writing tasks in the control group were identical to those in the experimental group. One distinction between the two groups was that students in the experimental group were assigned two writing journals each week as homework rather than writing exercises from the textbook. The students chose any topics they liked to write about. To check whether the students wrote their journals, the teacher asked them to bring their notebooks to school once a week. The teacher did not correct the students’ mistakes in the students’ writing journals; she just gave comments to show that the teacher agreed or disagreed with something the learner felt strongly about. The teacher took notes of students’ common errors and then gave more exercises relating to their errors to practice in class. To encourage students to participate in the journal writing activity eagerly, the teacher would add two plus points for students who completed Research Questions The current study addressed the following two questions: 1. To what extent does extensive journal writing impact EFL students’ writing accuracy? 2. To what extent does extensive journal writing impact EFL students’ writing fluency? F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING The second finding showed that extensive journal writing improved students’ writing fluency assessed through writing journals’ length— 119 VU PHI HO PHAM, TUYEN THI THANH TRAN, NGOC HOANG VY NGUYEN In short, previous studies found mixed results relating to whether journal writing could help students enhance their writing accuracy. Most researchers investigated if it helps students improve their grammatical performances. In a sense, grammar improvement did not guarantee writing accuracy because it did not help students change the content and organization, which lead to better writing quality. Moreover, there are limited research studies on high school students’ writing performances in both accuracy and fluency. At the same time, few studies in this field have been conducted in the Mekong Delta region. From these reasons and the gaps in the literature review, the researchers determine to seek answers for the effects of journal writing on EFL high school students’ writing accuracy and fluency. Writing accuracy in this paper refers to the total scores rated by the inter-raters and the writing errors, including spelling, word order, subject-verb agreement, tenses, and word forms, that the students have made in their writing papers. Writing fluency, in this paper, refers to the number of words written in each paper. errors, but the most common mistakes were Spelling, Word Order, Subject-Verb agreement, Tense, and Word Form. Participants were divided into two groups: the control group with 30 students (19 females and 11 males) and one experimental group with 30 students (21 females and nine males). Inter-raters Brown (2004) stated that the tests had to be free of bias and distortion for practical measurements. According to Hughes (1989), the subjective test involved the personal judgment of the examiner. It was probably that subjectivity that might affect the scoring process. The researchers invited one English teacher to evaluate the students’ writing papers to ensure the test scores’ subjectivity. The first rater was the teacher teaching two classes of the research. The other was an English teacher who had the same English proficiency as the rater one. Students’ writing papers were photocopied into two copies. Every rater kept one copy and marked it separately. Then, the researchers compared the marks and calculated the means. If there were significant differences between Participants The current study used a quasi-experimental design since the study investigated the effects of the extensive journal writing approach on EFL learners’ fluency and accuracy. The study was conducted at Tap Son high school in Tra Vinh city. The two intact classes chosen for the study were among eleven English classes with a total of three hundred and eighty-five students. Sixty students from the two English classes (20 males and 40 females) in grade 11 were chosen as the participants in the study. All the classes studied the same textbook of Tieng Anh-11 by Hoang et al. (2006), approved by the Ministry of Education & Training. To make the study more convenient, the researcher/teacher chose the two eleventh-grade classes in 2019-2020 to be participants. The two classes were at the same level, and they had been learning for six years. However, they felt anxious when learning English, especially writing skills. The students could not compose their writing as expected in the regular curriculum. Besides, the students’ writing texts were filled with several 120 the raters, the raters would discuss and give the final scores. their homework on time. The teacher collected the students’ notebooks (writing journals) for analysis at the end of the semester. The writing teaching approach applied in this study was the product writing approach. It was conducted in both groups (control group and experimental group). To ensure that the test scores were reliable, the raters had to base on the criterion to assess students’ writing products. The rubrics applied for evaluating students’ writings were discussed by the English group members and adapted to evaluate students’ writing papers for two years at the researchers’ school. The Cronbach’s Alpha of the inter-raters for evaluating students’ pre- tests and post-tests of the control group reached .91 and .93, and those of the experimental group reached .94 and .90. Data Analysis The researchers prepared checklists to compare the accuracy of students’ writing products. The two raters assessed students’ writing papers by counting the number of spelling errors, subject-verb agreement, tense, word order, and word form. The students’ writing errors were identified as the following examples in Table 1. Table 1 The examples for error identification Student’s answer 1.There are for people in my family SP 2. She like playing bestminton. My father is a worker. SV SP 3. He like playing games video. My sister is a student. SV WO 4. She studied in Tapson hight school T SP 5. I am usually going smim at weekend. T WF Coding for errors SP: Spelling WO: Word Order SV: Subject-Verb agreement T: Tense WF: Word Form *Student’s writing paper Table 1 The examples for error identification Student’s answer 1.There are for people in my family SP 2. She like playing bestminton. My father is a worker. SV SP 3. He like playing games video. My sister is a student. SV WO 4. She studied in Tapson hight school T SP 5. I am usually going smim at weekend. T WF Coding for errors SP: Spelling WO: Word Order SV: Subject-Verb agreement T: Tense WF: Word Form *Student’s writing paper Results One hundred twenty writing papers were collected and assessed in this current research. Sixty writing papers (30 pre-tests and 30 post-tests) were from the control group, and sixty other papers were from the experimental group (30 pre-tests and 30 post-tests). The average number of words of each writing in the control group was 52 words (M=52.667, SD=13.829), while the average number of a writing paper in the experimental group was 52 words (M=52.466, SD=13.521). To answer research question 1, the researchers examined each student’s results in the control group for their writing quality and writing accuracy. Then, students’ writing performance in the experimental group was also evaluated to confirm the correctness of using the target language. The last step was to compare students’ errors between the control and experimental groups. The results of the Pair-sample t-test are illustrated in the following Table 3. Relating to the comparison of the pre-test results across groups in terms of the students’ writing quality, the researchers ran an Independent-sample t-test to compare the result of pre-tests between the control group and experimental group before intervention. The purpose of this stage was to check whether students’ writing levels of the two groups were not different. The results from Table 3 showed that when looking at the mean scores of pre-tests, each student’s average score was 5.1 marks (M=5.100), and the average of each post-test was 5.2 marks (M=5.233). It seemed that the students got a slight improvement in writing scores (0.1). However, the result of a Pair-Sample t-test indicated that students’ writing performance in the control group revealed no differences in statistics (t= -.941; df=29; p=.354). Table 2 compares the scores of the students’ pre-tests in the two groups. As shown in Table 2, thirty texts in the control group and thirty writing papers in the experimental group were compared. The control group’s mean score is 5.10, and the mean score of the experimental group is 5.13. It seemed that the Table 1 The examples for error identification The examples for error identification check whether there were any changes. Finally, an Independent Sample t-test was run to compare the mean scores between the two groups. Simultaneously, the mean scores of errors were run by SPSS software (version 22). Finally, to compare the mean score of students’ writing accuracy in the control group between pre-tests and post-tests, a Pair-Sample T-Test was used and then compared the mean scores of students’ writing accuracy between pre-tests and post-tests of the experimental group to For fluency evaluation, writing checklists were also composed in advance. The item in the checklists contained the number of words. The mean number of 121 VU PHI HO PHAM, TUYEN THI THANH TRAN, NGOC HOANG VY NGUYEN experimental group’s mean score was a little bit higher than that of the control group. However, the Independent-sample t-test indicated that the control group students’ writing performance was the same as that of experimental group one (t= -.09; df= 58; p=.92). This was, before the intervention was exercised, students’ writing skills in both the control and experimental groups had no significant differences. Therefore, if there were any changes in students’ writing accuracy, it would be ascribed to the intervenor’s involvement. words was calculated with the help of SPSS software after the two raters had marked students’ writing papers. Then, to compare the mean score of students’ writing fluency in the control and experimental groups, a Pair-Sample T-test was used. Table 2 Scores of pre-tests of students in the control and experimental groups Variables N M SD MD t df Sig. Control Group 30 5.10 1.94 -.033 -.09 58 .928 Experimental Group 30 5.13 1.33 *Independent - Sample T-Test Table 3 Pre-tests and post-tests of students’ writing scores in the control group Variables N M SD t df Sig. Pretests 30 5.100 1.493 -.941 29 .354 Posttests 30 5.233 1.165 *Pair-Sample t-test Scores of pre-tests of students in the control and experimental groups Variables N M SD MD t df Sig. Control Group 30 5.10 1.94 -.033 -.09 58 .928 Experimental Group 30 5.13 1.33 *Independent - Sample T-Test Scores of pre-tests of students in the control and experimental groups To What Extent does Extensive Journal Writing Impact EFL Students’ Writing Accuracy? To determine more effects of extensive journal writing on EFL students’ writing, the researchers examined XTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING THE EFFECTS OF EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STU The result of pair 4 (tense) revealed that the mean score of tense errors of pre-test in each student’s writing paper was 1.8 errors (M= 1.800) while that of post-test was 1.7 errors (M= 1.733). The number of errors decreased (0.1). However, a Pair-sample t-test reported that the pre-test and post-test errors had no statistically significant difference (t=.628; df=29; p=.53). students’ writing accuracy in pre-tests and post-tests of the control group. In the first step of the analysis process, the researchers analyzed students’ writing errors in the control group to check for any changes after a ten-week study by conducting a Pair-Sample T-Test. The results are shown in Table 4 below. As shown in Table 4, the results of a Pair-Sample t-test illustrated that the mean score of the spelling errors on the pre-test was 4.2 errors (M=4.166), and the mean score of spelling errors on the post-test was 4.2 errors (M=4.233). It seemed that the accuracy in terms of spelling remained the same after ten weeks (t=-.494; df= 29; p= .625). As shown in Table 4, a Pair-Sample T-Test result illustrated that each student’s word form errors on the pre-test were 2.5 errors (M=2.567), and the mean score of word form errors on the post-test was 2.5 errors (M=2.500). It seemed that the accuracy in terms of word form was not different after a period of ten weeks (t=.626; df= 29; p= .536). The result of Word-order, pair 2, showed that the mean number of word-order errors for the pre-test was 2.6 errors (M=2.633), and that of the post-test was also 2.6 errors (M=2.566). It could be said that the mean scores of word-order errors of pre-tests and post-tests were not significantly different (t=.812; df= 29; p= .42). In general, the results from Table 4 illustrated that the students’ writing accuracy in the control group had minor changes. Still, the results of a Pair-sample t-test indicated no significant difference between the pre-tests and the post-tests. Comparing the Writing Quality of Pre-tests and Post- Tests of the Experimental Group Regarding the subject-verb agreement (pair 3), the result from table 4 illustrated that the mean score of each student’s writing errors (subject-verb agreement) on the pre-test contained 2.7 errors (M=2.700), while the mean score of that post-test was 2.6 errors (M=2.633). It meant that students’ errors seemed to be reduced by 0.1 error for this part. However, the result of a Pair-sample t-test indicated no significant difference between the pre-test and post-test errors (t=.571; df=29; p=.57). Students’ writing quality of pre-tests was compared with that of post-tests to determine the effects of writing journal practice on EFL students after the implementation. In other words, this comparison aimed to investigate if an extensive journal writing approach affects each student’s writing skill. Table 5 presents the results of a Pair-Sample t-test. Table 4 123 Table 4 Writing accuracy of pre-tests and post-tests of the control group Variables N M SD t df Sig. Spelling Pre 30 4.167 .6989 -.494 29 .625 Post 30 4.233 .6789 Word Order Pre 30 2.633 .490 .812 29 .423 Post 30 2.567 .504 Subject-Verb Agreement Pre 30 2.700 .466 .571 29 .573 Post 30 2.633 .490 Tenses Pre 30 1.800 .406 .628 29 .536 Post 30 1.733 .449 Word form Pre 30 2.567 .568 .626 29 .536 Post 30 2.500 .508 *Pair Sample t-test Table 5 Pre-tests and post-tests of students’ writing scores in the experimental group Variables N M SD t df Sig. Pretests 30 5.133 1.332 -9.893 29 .000 Posttests 30 6.333 1.700 *Pairs Samples t-test Writing accuracy of pre-tests and post-tests of the control group Variables N M SD t df Sig. Spelling Pre 30 4.167 .6989 -.494 29 .625 Post 30 4.233 .6789 Word Order Pre 30 2.633 .490 .812 29 .423 Post 30 2.567 .504 Subject-Verb Agreement Pre 30 2.700 .466 .571 29 .573 Post 30 2.633 .490 Tenses Pre 30 1.800 .406 .628 29 .536 Post 30 1.733 .449 Word form Pre 30 2.567 .568 .626 29 .536 Post 30 2.500 .508 *Pair Sample t-test Writing accuracy of pre-tests and post-tests of the control group Table 3 Pre-tests and post-tests of students’ writing scores in the control group Variables N M SD t df Sig. Pretests 30 5.100 1.493 -.941 29 .354 Posttests 30 5.233 1.165 *Pair-Sample t-test Pre-tests and post-tests of students’ writing scores in the control group 122 F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING Comparing the writing accuracy of pre-tests and post-tests of the experimental group After the implementation, the researchers analyzed students’ writing errors in the experimental group to check if there were any changes by conducting a Pair- Sample T-test. The results are shown in Table 6 below. As shown in Table 6, a Pair-Sample T-Test result indicated that the mean score of each student’s word form errors on the pre-test was 2.5 errors (M=2.567), and the mean score of word form errors on the post- test was 1.4 errors (M=1.467). It seems that the accuracy in word form remained the same after ten weeks (t=6.279; df= 29; p= .00). In short, the results from Table 6 showed that the students’ writing accuracy in the experimental group had improved dramatically. The results of a Pair-sample t-test indicated there was a significant difference between the pre-tests and the post-tests. As shown in Table 6, the results of a Pair-Sample T-test illustrated that the mean score of the spelling errors on the pre-test was 4.2 errors (M=4.200), and the mean score of spelling errors on the post-test was 2.5 errors (M=2.533). It seemed that the accuracy in terms of spelling was significantly different after ten weeks (t=12.836; df= 29; p= .00). The result of Word-order showed that the mean number of word-order errors in the pre-test was 2.7 errors (M=2.700), while the mean number of word- order errors in the post-test was 1.8 errors (M=1.800). It indicated that the mean score of word-order errors of pre-tests and post-tests was significantly different (t=7.449; df= 29; p= .00). Table 5 Pre-tests and post-tests of students’ writing scores in the experimental group Variables N M SD t df Sig. Pretests 30 5.133 1.332 -9.893 29 .000 Posttests 30 6.333 1.700 *Pairs Samples t-test Pre-tests and post-tests of students’ writing scores in the experimental group 123 VU PHI HO PHAM, TUYEN THI THANH TRAN, NGOC HOANG VY NGUYEN mean score of that post-test was 1.5 errors (M=1.533). It meant that students’ errors for this part were reduced by 1.1 errors. The result of a Pair-sample t-test indicated a significant difference between the pre-test and post-test errors (t=9.109; df=29; p=.00). As shown in Table 5, the results of a Pair-Sample t-test displayed that the mean score of the pre-test writing was 5.1 marks (M= 5.1333), and that of the post-test was 6.3 marks (M=6.333). The post-test result is 1.2 marks higher than that of the pre-test (Mpre=5.1333 and Mpost=6.333). Simultaneously, there were significant differences between each student’s writing quality in pre-tests and post-tests (t= -9.893; df= 29; p<.00). This revealed that each student performed better after journal writing practice for ten weeks. The result of Tenses revealed that the mean score of tense errors on the pre-test in each student’s writing paper is 1.8 errors (M= 1.833), while that of the post- test is 1.3 errors (M= 1.367). The number of errors tended to decrease (0.5). The result of a Pair-sample t-test reported that the number of errors in the pre- test and post-test had statistically different (t=4.474; df=29; p=.00). Table 7 Table 7 Students’ writing accuracy of the control group and experimental group Variables N M SD MD t df Sig. Spelling Control 30 4.233 .6789 1.700 9.680 58 .000 Experimental 30 2.533 .6815 Word Order Control 30 2.567 .504 .767 5.624 58 .000 Experimental 30 1.800 .551 Subject-Verb Agreement Control 30 2.633 .490 1.100 8.540 58 .000 Experimental 30 1.533 .507 Tense Control 30 1.733 .449 .367 3.019 58 .000 Experimental 30 1.367 .490 Word form Control 30 2.500 .508 1.033 6.100 58 .000 Experimental 30 1.467 .776 *Independent - Sample t-test The result of Tenses revealed that the mean score of tense errors of each student’s writing paper in the control group was 1.7 errors (M= 1.733), and that of the experimental group was 1.4 errors (M= 1.367). The difference in the errors was 0.3 errors. The result of an Independent-sample t-test reported that the number of errors of each student between the two groups had a statistically significant difference (t=3.019; df=58; p<.05). As shown in Table 7, the results of an Independent- Sample T-Test illustrate that the mean score of the spelling errors of the control group was 4.2 errors (M=4.233), and the mean score of each student’s spelling errors in the experimental group was 2.5 errors (M=2.533). The number of students’ spelling errors in the control group was higher (1.7 errors) than that of students in the experimental group. An Independent-Sample T-Test results showed a significant difference between the two groups (t=12.836; df= 29; p< .00). Therefore, the results indicated that the accurate spelling of students’ writing in the experimental group was significantly different from that of students in the control group after a period of ten-week implementation. As shown in Table 7, the results of an Independent- Sample T-Test illustrated that each student’s word form errors in the experimental group were 1.5 errors (M=1.467), and the mean score of word form errors in the control group was 2.5 errors (M=2.500). It illustrated that the accuracy in terms of word form of students with journal writing outweighed the control group after ten weeks (t=6.100; df= 58; p< .05). The result of Word-order showed that the mean number of word-order errors of each student in the control group was 2.6 errors (M=2.567), while the mean number of word-order errors of each student in the experimental group was 1.8 errors (M=1.800). Table 7 It could be said that the mean scores of word-order errors of the control group and experimental group were significantly different (t=5.624; df= 58; p<.00). The students with journal writing practice had an improvement in their grammatical accuracy. In short, the results from Table 7 illustrated that the students’ writing accuracy in the experimental group had improved dramatically. The results of an Independent-sample t-test indicated a significant difference between the students in the experimental group and the control group. F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING THE EFFECTS OF EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDE Comparing the Writing Accuracy of the Control Group and Experimental Group After applying an extensive journal writing approach, writing accuracy from two groups was also analyzed. The researchers would like to determine if there were any differences in terms of accuracy between the two groups. An Independent - Sample t-test was conducted to compare the differences. The result of the Independent-sample t-test is shown in Table 7 as follows. Regarding the subject-verb agreement, the result from table 6 illustrated that the mean score of each student’s writing errors (subject-verb agreement) of the pre-test contained 2.6 errors (M=2.667), while the Table 6. Students’ writing accuracy of pre-tests and post-tests of the experimental group Students’ writing accuracy of pre-tests and post-tests of the experimental group Variables N M SD T Df Sig. Spelling Pre 30 4.200 .714 12.836 29 .000 Post 30 2.533 .681 Word Order Pre 30 2.700 .466 7.449 29 .000 Post 30 1.800 .551 Subject-Verb Agreement Pre 30 2.667 .547 9.109 29 .000 Post 30 1.533 .507 Tenses pre 30 1.833 .379 4.474 29 .000 Post 30 1.367 .490 Word form Pre 30 2.567 .626 6.279 29 .000 Post 30 1.467 .776 *Pair Samples t-test 124 To What Extent does Extensive Journal Writing Impact EFL Students’ Writing Fluency? Regarding the subject-verb agreement, the result from table 7 illustrated that the mean score of each student’s writing errors (subject-verb agreement) in the control group was 2.6 errors (M=2.633). In comparison, the mean score of that of each student in the experimental group was 1.5 errors (M=1.533). It meant that the students in the experimental group reduced 1.1 errors for this part. An Independent- sample t-test indicated a statistically significant difference between the errors of the experimental group and the control group (t=8.540; df=58; p<.00). The researchers tallied the number of words written by the students in the pre-test and post-tests to respond to this research question. Unlike the analysis of students’ written errors, this research question only attempted to measure the length of the students’ written papers. Table 8 presents the comparison of the control group students’ writing fluency between the pre-test vs. Post-tests. 125 VU PHI HO PHAM, TUYEN THI THANH TRAN, NGOC HOANG VY NGUYEN writing fluency. The statistics are presented in Table 10. As seen in Table 8, on average, each student in the control group composed 52.66 words in the pre-tests (M = 52.667; SD = 13.83). For the written papers in the post-test, each of them wrote 53.26 words (M = 53.266; SD = 12.506). The results of the pair-sample t-test (t= -942; df= 29; p= .354; p>.05) indicated that there was no statistically significant difference between the two groups. In order words, the students’ writing fluency in the post-test control group was not statistically different compared to the pre-test. Table 8 compares the students’ writing fluency in the experimental group between the pre-test vs. Post-test. As seen in Table 10, the mean scores of the control group and experimental group were different (M=53.267; SD=12.506 and M=73.267; SD=16.737). The result showed that the control group students’ writing performance significantly differs from that of the experimental one (t=-5.234; df=58; p<.05).The students in the experimental group achieved higher writing fluency in terms of the number of words than those in the control group. As illustrated in Table 9, a Pair-Sample t-test was performed to investigate whether students’ writing fluency in pre-tests (M=52.467; SD=13.520) differed from post-tests (M=73.267; SD=16.737). The paired sample t-test showed a statistically significant difference between the two mean scores (t= -12.686; d=29; p<.05). The length of the students’ writing text for the pre-tests was shorter than that of the post- tests. Students could produce longer paragraphs within the same length of writing time in the post- test. Discussion From the reported results, the researchers could conclude that journal writing practice implementation brought positive effects on EFL learners’ writing quality in terms of writing accuracy and fluency. The post-test findings illustrated that the students’ writing achievement in the experimental group was much better than those in the control group. This meant that the statistical results helped the researchers confidently conclude the efficacy of journal writing practice on EFL students’ writing performance. It went the same as the hypothesis that the extensive journal writing approach could positively affect students’ writing performance. The Finally, to examine the students’ writing fluency of the control and experimental groups, an Independent Sample T-Test was conducted to identify whether the two groups had any statistical differences in students’ Table 8 126 Students’ writing fluency in pre-tests and post-tests of the control group Variables N M SD t df Sig. Pretests 30 52.667 13.829 -.942 29 .354 Posttests 30 53.267 12.506 *Pair Samples t-test Table 9 Students’ writing fluency in pre-tests and post-tests of the experimental group Variable N M SD MD t df Sig. Pretests 30 52.467 13.520 -12.686 29 .000 Posttests 30 73.267 16.737 Note: *Pair Samples t-test Table 10 Students’ writing fluency in two groups after the implementation Variable N M SD MD t df Sig. Control group 30 53.267 12.506 -20.00 -5.234 58 .000 Experimental group 30 73.267 16.737 -20.00 Note: * Independent Sample t-test Students’ writing fluency in pre-tests and post-tests of the control group Variables N M SD t df Sig. Pretests 30 52.667 13.829 -.942 29 .354 Posttests 30 53.267 12.506 *Pair Samples t-test Students’ writing fluency in pre-tests and post-tests of the control group Variables N M SD t df Sig. Pretests 30 52.667 13.829 -.942 29 .354 Posttests 30 53.267 12.506 *Pair Samples t-test Students’ writing fluency in pre-tests and post-tests of the control group Table 9 Students’ writing fluency in pre-tests and post-tests of the experimental group Variable N M SD MD t df Sig. Pretests 30 52.467 13.520 -12.686 29 .000 Posttests 30 73.267 16.737 Note: *Pair Samples t-test Students’ writing fluency in pre-tests and post-tests of the experimental group Variable N M SD MD t df Sig. Pretests 30 52.467 13.520 -12.686 29 .000 Posttests 30 73.267 16.737 Note: *Pair Samples t-test Students’ writing fluency in pre-tests and post-tests of the experimental group Table 10 Students’ writing fluency in two groups after the implementation Variable N M SD MD t df Sig. Control group 30 53.267 12.506 -20.00 -5.234 58 .000 Experimental group 30 73.267 16.737 -20.00 Note: * Independent Sample t-test Students’ writing fluency in two groups after the implementation 126 F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING THE EFFECTS OF EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STU students’ progress was obviously demonstrated through the students’ writing scores. After the implementation, the students performed better in their writing skills. This demonstrated that the students made great efforts in their learning. Thus, the effects of the intervention on the students’ achievement could be confirmed. This finding contradicted Puengpipattrakul’s (2009) study, which found that journal writing failed to help students improve their writing quality, except for grammar accuracy. Similarly, Rokni and Seifi (2014) also found that journal writing could help students perform grammar better, and students felt more confident in writing in English. Huelser and Metcalfe (2011) claimed that they could accomplish various concepts relating to the errors when students generated their errors. In addition, Kessler (2021) found that journal writing helped students’ metacognitive awareness, and the students evaluated this activity as beneficial and enjoyable. Similarly, Nückles et al. (2020) found that writing journals created a motivational effect on the students’ learning processes, and it raised the cognitive awareness of the students in the quality of peer feedback to help each other improve their writing outcomes. Previous research showed that extensive journal writing greatly affected the students’ writing fluency in terms of length (Herder & King, 2012; Luu, 2010; Ho & Duong, 2015). The findings of the current research confirmed those findings of the previous studies. The extensive journal writing provided suitable conditions for the students to involve in learning activities in the classroom. That was to say, the more the students wrote, the better they became. In other words, practice makes perfect (Hagger et al., 2008). Previous research showed that extensive journal writing greatly affected the students’ writing fluency in terms of length (Herder & King, 2012; Luu, 2010; Ho & Duong, 2015). The findings of the current research confirmed those findings of the previous studies. The extensive journal writing provided suitable conditions for the students to involve in learning activities in the classroom. That was to say, the more the students wrote, the better they became. Table 10 In other words, practice makes perfect (Hagger et al., 2008). In general, the findings which were discussed in the present study were relevant to some previous studies. However, the findings from the current study revealed that journal writing’s effects also worked effectively with EFL students in a high school, which contributed to the body of literature. Additionally, the present study results ensured that extensive journal writing could help enhance students’ writing performance in both writing accuracy and fluency. This added stronger conclusions that previous research had not confirmed. Additionally, the researchers hoped that the findings would attract more concerns for further studies relating to journal writing activities. In addition to the findings for research question 1, it could be seen from the above data analysis that the number of errors in each students’ writing paper was less than that in the pre-test after the implementation. That meant the students were able to limit making mistakes when producing writing papers, and they felt more aware of their grammatical accuracy. The students might self-correct their errors as they composed their journal writing regularly. This revealed that by implementing extensive journal writing, the teachers could place the “student- centered” approach in the classroom, and the teacher gain cooperation among the students in the learning activities, which could lead to better results of studies (Pham & Nguyen, 2020; Pham, 2021b). Pedagogical implications Based on the findings, the current study presented some pedagogical implications. First, the writing teachers should employ journal writing practices for the students, especially those who have difficulties writing in English. Learners experience learning activities regularly, and then they can construct knowledge or skills from their capacity. The practice was a process of helping learners grow themselves and self-adjust their actions to meet their learning objectives. The theories that the students learned in the lessons provided students with basic foundations for their learning, whereas bringing theories into practical situations and using them as routines would help students develop their learning autonomy. In other words, as students habitually utilize English in their real life, they would develop their language use naturally. Also, English language learners were able to increase learning automaticity by doing a practice of using English. Therefore, it could be concluded that students would learn more about their English writing when they spent more time on writing practice. Two journals per week could allow the students to do their writing practice. The more they wrote journals, the more they acquired their language. Benson, P. (2013). Teaching and researching: Autonomy in language learning. Routledge. Bitchener, J. (2008). Evidence in support of written corrective feedback. Journal of second language writing,  17(2), 102-118. https://doi.org/10.1016/j. jslw.2007.11.004 Brown, G. T. (2004). Teachers’ conceptions of assessment: Implications for policy and professional development. Assessment in Education: Principles, Policy & Practice, 11(3), 301-318. https:// doi.org/10.1080/0969594042000304609 Cisero, C. A. (2006). Does reflective journal writing improve course performance? College Teaching, 54(2), 231-236. https://doi.org/10.3200/ CTCH.54.2.231-236 Ellis, R., Sheen, Y., Murakami, M., & Takashima, H. (2008). The effects of focused and unfocused written corrective feedback in an English as a foreign language context. System,  36(3), 353-371. https://doi.org/10.1016/j.system.2008.02.001 Fulwiler, T. (1982). The personal connection: Journal writing across the curriculum. In T. Fulwiler & A. Young (Eds.), Language connections: Writing and reading across the curriculum (pp. 15-31). NCTE. Self-reflection was considered one of the essential elements enhancing the learning process. Re-reading steps helped learners reflect on their thinking and language use as well. Students formed their autonomy, and their learning processes were controlled themselves. Students coped with their learning processes without the teacher’s intervention. Learners were responsible for their learning or duty to people around them. Gradually, learners could fully develop themselves. Hagger, H., Burn, K., Mutton, T., & Brindley, S. (2008). Practice makes perfect? Learning to learn as a teacher. Conclusion The main findings of the current study were summarized as follows. First, the post-test results showed statistically significant differences between the control and experimental groups. The present study indicated that students’ writing quality in the experimental group was better than that in the control group. In other words, journal writing practice could help improve students’ writing performance in the writing classrooms. The findings of the current study were innovative to the body of literature that extensive journal writing helped students improve their grammatical accuracy as previous research studies did and helped students improve their writing skills. These results also contributed to previous studies (Puengpipattrakul, 2009; Rokni & Seifi, 2014) about the effects of an extensive journal writing approach on EFL students’ writing accuracy. Simultaneously, regarding writing accuracy, the data from the tests reported that the number of writing errors was dropped dramatically. The students tended to pay much attention to spelling errors in their journal writing. The more they practice writing, the fewer writing errors they might commit to. The number of spelling errors in each student’s writing paper also decreased greatly. The writing errors, spelling, and the other four errors mentioned above, which the students made, reduced by nearly half compared to the pre-test. That was why it could be concluded that the students were able to improve the grammar accuracy degree of the writing with the supportive tool – journal writing. Regarding the students’ writing fluency, the findings of the current study revealed that the students in the control group did not increase their writing fluency, while the students in the experimental group composed their writing with more words compared to the pre-tests. The results of the comparison between the post-tests of the two groups also indicated that there was a remarkable difference between the two groups. This meant that the writing journal helped the students improve writing accuracy and writing fluency. 127 Acknowledgments Second, the study results strongly confirmed the effects of journal writing practice on students’ writing fluency. Although the students could not achieve wording length as the curriculum required, the number of words in each student’s writing paper went up sharply. This current result contributed to the previous studies- about the effects extensive journal writing approach on EFL students’ writing fluency. The participants revealed their progress in every journal. It was demonstrated that the number of words in their writing was getting more prosperous. The authors of this article acknowledged the support of Van Lang University at 69/68 Dang Thuy Tram St. Ward 13, Binh Thanh Dist., Ho Chi Minh City, Vietnam. Pedagogical implications Oxford Review of Education, 34(2), 159-178. https://doi.org/10.1080/03054980701614978 Hammanind, J. & Derewianka, B. (2001). Genre. In R. Carter & D. Nunan (Eds.), The Cambridge guide to teaching English to speakers of other language. Cambridge University Press. Herder, S., & Clements, P. (2012). Extensive writing: A fluency-first approach to EFL writing. In Innovating EFL teaching in Asia (pp. 232-244). Palgrave Macmillan. References Baghi, R., Ghanbari, N., Bushehr, I., & Motlagh, H. S. (2016). The effect of Journal writing and expertise on teacher’s reflectivity in teaching English as a foreign language. Modern Journal of Language Teaching Methods, 6(7), 50-67. http://dx.doi. org/10.26655/mjltm.2016.10.6 Declaration of Competing Interest Herder, S., & King, R. (2012). Extensive Writing: Another fluency approach for EFL learners. Extensive Reading World Congress Proceedings, 1, 128-130. None declared. None declared. Ho, P. V. P., & Duong, P. N. T. (2015). Common errors 128 F EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STUDENTS’ WRITING THE EFFECTS OF EXTENSIVE JOURNAL WRITING ON THE VIETNAMESE HIGH-SCHOOL STU in writing journals of the English major students at Ho Chi Minh City Open University. Social Sciences, 5(1), 3-12. Pham, V. P. H. (2021b). The effects of collaborative writing on students’ writing fluency: An efficient framework for collaborative writing. SAGE Open, 11(1), 1-11. https://doi. org/10.1177/2158244021998363 Hoang, V. V., Hoang T. X. H., Dao, N. L., Vu, T. L., Do, T. M, & Nguyen Q. T. (2006). Tieng Anh 11 [English 11]. Nha Xuat Ban Giao Duc. Pham, V. P. H., & Bui, T. K. L. (2021). Genre-based Approach to Writing in EFL Contexts. World Journal of English Language, 11(2), 95-106. https://doi. org/10.5430/wjel.v11n2p95 Huelser, B. J., & Metcalfe, J. (2012). Making related errors facilitates learning, but learners do not know it. Memory & Cognition, 40(4), 514-527. https://doi. org/10.3758/s13421-011-0167-z Pham, V.- P. H., Huyen, L. H., & Nguyen, M. T.. (2020). The incorporation of quality peer feedback into writing revision. Asian Journal of Applied Linguistics, 7(1), 45-59. Hughes, A. (1989). Testing for language teachers. Cambridge University Press. Hyland, K. (2019). Second language writing. Cambridge university press.Kessler, M. (2021). Supplementing mobile-assisted language learning with reflective journal writing: A case study of Duolingo users’ metacognitive awareness. Computer Assisted Language Learning, 1-24. In Press. https://doi.org/ 10.1080/09588221.2021.1968914 Pham, V. P. H., & Nguyen, N. H. V. (2020). Blogging for collaborative learning in the writing classroom. International Journal of Cyber Behavior, Psychology and Learning, 10(3), 1-11. https://doi. org/10.4018/IJCBPL.2020070101 Pham, V. P. H., & Do, T. H, (2021). The impacts of task-based instruction on students’ grammatical performances in speaking and writing skills: A quasi-experimental study. International Journal of Instruction, 14(2), 969-986. https://doi. org/10.29333/iji.2021.14255a Larsen-Freeman, D., & Anderson, M. (2013). Techniques and principles in language teaching. Oxford handbooks for language teachers (3rd. ed.). Oxford University Press. Liao, M. T., & Wong, C. T. (2010). Effects of dialogue journals on L2 students’ writing fluency, reflections, anxiety, and motivation. Reflections on English Language Teaching, 9(2), 139-170. Pham, V. P. H., & Truong, M. H. (2021). Teaching writing in Vietnam’s secondary and high schools. Education Sciences, 11(10), 632-655. https://doi.org/10.3390/ educsci11100632. Luu, T. T. Declaration of Competing Interest (2010). Enhancing EFL Learners’ Writing Skill via Journal Writing. English Language Teaching, 3(3), 81-88. Puengpipattrakul, W. (2009). The use of journals to develop grammatical accuracy in writing. Manusya: Journal of Humanities, 12(2), 90-108. Luu, T. T. (2011). Teaching writing through genre- based approach. Brazilian English Language Teaching Journal, 2(1), 121-136. Richards, J. C., & Renandya, W. A. (Eds.). (2002). Methodology in language teaching: An anthology of current practice. Cambridge University Press. Marefat, F. (2002). The impact of diary analysis on teaching/learning writing. Relc Journal, 33(1), 101- 121. Rokni, S. J. A., & Seifi, A. (2014). The effect of dialog journal writing on EFL learners’ grammar knowledge. Journal of Language and Linguistic Studies, 9(2), 57-67. Nückles, M., Roelle, J., Glogger-Frey, I., Waldeyer, J., & Renkl, A. (2020). The Self-regulation- view in writing-to-learn: Using journal writing to optimize cognitive load in self-regulated learning. Educational Psychology Review, 32, 1089– 1126. https://doi.org/10.1007/s10648-020-09541-1 Schmidt, H. G., Rotgans, J. I., & Yew, E. H. (2011). The process of problem-based learning: what works and why. Medical education, 45(8), 792-806. https:// doi.org/10.1111/j.1365-2923.2011.04035.x Pham, V. P. H., & Nguyen, T. B. (2014). The effects of communicative grammar teaching on students’ achievement of grammatical knowledge and oral production. English Language Teaching (ELT), 7(6), 74-86. https://doi.org/10.5539/elt.v7n6p74 Sholah, H. M. (2019). Enhancing EFL Learners’ Writing Skill via Journal Writing. Alsuna: Journal of Arabic and English Language, 2(2), 96-116. https://doi. org/10.31538/alsuna.v2i2.397 Pham, Vu Phi Ho & Do, T. P. T. (Dec. 2019). High school students’ common errors in writing essays. International Journal of English Linguistics, 9(6), 309 – 319. https://doi.org/10.5539/ijel.v9n6p309 Truong, M. Hoa & Pham, V. P. H. (2017). High school teachers’ pedagogical beliefs in English as a foreign language writing instruction. Journal of Science Ho Chi Minh City Open University, 7(4), 21-23. Wyrick, J. (2021). Steps to writing well with additional readings. Cengage Learning. Pham, V. P. H. (2021a). The effects of lecturer’s model e-comments on graduate students’ peer e-comments and writing revision. Computer Assisted Language Learning, 34(3), 324-357. https:// doi.org/10.1080/09588221.2019.160952 Yagcioglu, O. (2015). New approaches on learner autonomy in language learning. 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Diversity and distribution of extra-floral nectaries in the cerrado savanna vegetation of Brazil
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John Boudouris and Simon A. Queenborough John Boudouris and Simon A. Queenborough Department of Evolution, Ecology & Organismal Biology, The Ohio State University, Columbus, OH, USA Department of Evolution, Ecology & Organismal Biology, The Ohio State University, Columbus, OH USA Location. Brazil Methods. We used a database detailing the incidence of 849 plant species at 367 cerrado sites throughout Brazil. We determined which species possessed EFNs and mapped their distributions. We tested for correlations between the proportion of EFN species at each site and (i) three environmental variables (mean annual temper- ature, mean annual precipitation, and the precipitation in the driest quarter of the year), (ii) a broad soil classification, and (iii) the total species diversity of each site. Results. We found a wide range in the proportion of EFN species at any one site (0–57%). However, whilst low diversity sites had wide variation in the number of EFN species, high diversity sites all had few EFN species. The proportion of EFN species was positively correlated with absolute latitude and negatively correlated with longitude. When accounting for total species diversity, the proportion of EFN species per site was negatively correlated with precipitation in the driest quarter of the year and positively correlated with temperature range. Submitted 31 July 2013 Accepted 11 November 2013 Published 28 November 2013 Corresponding author Simon A. Queenborough, queenborough.1@osu.edu Academic editor Stuart Pimm Additional Information and Declarations can be found on page 10 DOI 10.7717/peerj.219 Copyright 2013 Boudouris and Queenbor- ough Distributed under Creative Commons CC-BY 3.0 OPEN ACCESS Submitted 31 July 2013 Accepted 11 November 2013 Published 28 November 2013 Corresponding author Simon A. Queenborough, queenborough.1@osu.edu Academic editor Stuart Pimm Additional Information and Declarations can be found on page 10 DOI 10.7717/peerj.219 Copyright 2013 Boudouris and Queenbor- ough Distributed under Creative Commons CC-BY 3.0 OPEN ACCESS Main Conclusions. These results suggest either that herbivore pressure may be lower in drier sites, or that ants are not as dominant in these locations, or that plant lineages at these sites were unable to evolve EFNs. Subjects Biodiversity, Biogeography, Ecology Keywords Ant-plant mutualism, Savanna, Leaf, Nectar, Tropical forest, Extra-floral nectary, Cerrado, Brazil Copyright 2013 Boudouris and Queenbor- ough Subjects Biodiversity, Biogeography, Ecology Keywords Ant-plant mutualism, Savanna, Leaf, Nectar, Tropical forest, Extra-floral nectary, Cerrado, Brazil How to cite this article Boudouris and Queenborough (2013), Diversity and distribution of extra-floral nectaries in the cerrado savanna vegetation of Brazil. PeerJ 1:e219; DOI 10.7717/peerj.219 ABSTRACT Aim. Throughout evolutionary history, plants and animals have evolved alongside one another. This is especially apparent when considering mutualistic relationships such as between plants with extra-floral nectaries (EFNs, glands on leaves or stems that secrete nectar) and the ants that visit them. Ants are attracted by the nectar and then protect the plant against destructive herbivores. The distribution of these plants is of particular interest, because it can provide insights into the evolutionary history of this unique trait and the plants that possess it. In this study, we investigated factors driving the distribution of woody plants with EFNs in the cerrado vegetation of Brazil. INTRODUCTION Distributed under Creative Commons CC-BY 3.0 The large-scale distribution patterns of many plant traits, as well as the factors that drive these distributions, are still poorly understood in many ecosystems. In particular, plants from the tropics were long believed to have more traits associated with defence against herbivores than plants in temperate latitudes (Schemske, Mittelbach & Cornell, 2009). The idea that plants in the tropics experience greater herbivore pressure, thus driving selection for improved defence or resistance traits, is key to our understanding of the factors influencing latitudinal gradients in plant traits and patterns of plant diversity. The geographic implications of the distribution of plant herbivore defenses is complex, in part because there are many variables associated with geographic distribution. Various studies have demonstrated a general trend of increasing anti-herbivore defences in plants moving toward the equator (Coley & Barone, 1996; Fiala & Linsenmair, 1995; Oliveira & Oliveira-Filho, 1991; Pemberton, 1998; Schemske, Mittelbach & Cornell, 2009). This trend is generally believed to correlate with the intensity of current herbivory in the region, or the intensity of herbivory with which the flora’s ancestors had to contend. For example, the presence of cyanide as a defensive compound has been demonstrated to vary in this way with latitude as an effect of temperature gradients (Jones, Keymer & Ellis, 1978). Further, the mutualistic relationship between ants (and less commonly, certain wasps and flies) and plants, involving extra-floral nectaries has been demonstrated to increase in abundance with decreasing latitude (Pemberton, 1998). Nevertheless, the results of both a recent meta-analysis and a global observational study contradict these findings, suggesting that plants at higher (temperate) latitudes possess greater herbivory resistance traits than plants at lower (tropical) latitudes (Moles et al., 2011a; Moles et al., 2011b). Extra-floral nectaries (EFNs) are nectar-producing glands that occur on plant leaves or stems, and are therefore usually not involved in pollination (Fiala & Linsenmair, 1995). They are integral components in a particularly interesting mutualistic relationship between plants and insects, most often ants. These glands produce a sugary nectar that attracts ants, which either become resident or frequent visitors of the plant. The presence of ants has been demonstrated to result in lower levels of herbivory for the plant (Oliveira & Fraitas, 2004). This benefit is likely the result of the tendency of ant colonies to defend their homes and food sources from possible threats. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 INTRODUCTION However, the factors that drive variation in the incidence and abundance of EFN within and among communities remain unknown. Several studies have determined that EFNs become more prevalent with decreasing latitude (Fiala & Linsenmair, 1995; Keeler, 1980; Oliveira & Leit˜ao-Filho, 1987; Oliveira & Oliveira-Filho, 1991; Pemberton, 1998), but this information alone is not enough to deduce the cause, because the many potential explanatory variables confound each other in any given ecosystem and they are not always consistent along latitudinal gradients. Further, many such studies compare widely different ecosystems with contrasting evolutionary histories and distantly-related species. For example, the only previous large-scale study to date of EFN prevalence (Pemberton, 1998) was conducted in eastern Asia across a number of different biomes, so it is likely that many confounding factors were missed. A more rigorous approach would compare the same life forms and related species in the same ecosystem across a wide range of latitudes and varying environmental conditions. The Brazilian cerrado is a good candidate for this kind of study. The cerrado is a savanna biome that previously covered 2 million km2 (about 22%) of Brazil, with a high level of Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 2/13 biodiversity (Oliveira & Marquis, 2002) and a relatively high abundance of plant species with EFN compared to other parts of the world (Oliveira & Fraitas, 2004). The cerrado biome covers a wide latitudinal range from 23◦S to a few sites close to the equator (Oliveira & Marquis, 2002), and is therefore a good place to study latitudinal variation whilst controlling for as many biogeographic and ecological variables as possible. For this study, we investigated the environmental factors influencing the distribution of EFN. Specifically we ask (i) how the abundance of EFN varied with latitude, precipitation, temperature, soil type, and the species richness?, and (ii) do these relationships support previous established relationships between plant defences and latitude? Based on the current literature we predicted that EFN incidence increased with decreasing latitude (i.e., closer to the equator), and that factors implicated in higher herbivore pressure such as aseasonality would correlate with high EFN incidence. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 MATERIALS AND METHODS We restricted our analyses to woody plants. To consistently document woody plant incidence across a wide range of latitude and environmental variation, we used the - revised - dataset collected by Ratter, Bridgewater & Ribeiro (2003), revised Ratter et al. (2010), documenting the incidence of 849 tree or large shrub species at 367 cerrado and Amazonian savanna sites throughout Brazil. This dataset currently covers about 75% of the cerrado domain. Other woody communities of the biome such as gallery and mesophytic forests were not included. Species richness varied from Amazonian savannas containing only a single woody species to >100 in the cerrado core area and its southern outliers. All taxa were identified to species-level, making this dataset extremely valuable and virtually unique in large-scale plant datasets (Fig. 1). Data on which of these species have extra-floral nectaries was obtained from Neotropi- cal floras (Oliveira & Marquis, 2002; Pennington & Ratter, 2006), an online database (Keeler, 2008), and several journal articles (Oliveira & Leit˜ao-Filho, 1987; Oliveira & Oliveira-Filho, 1991; D´ıaz-Castelazo et al., 2004; D´ıaz-Castelazo et al., 2005; Oliveira & Fraitas, 2004; Marazzi et al., 2006; Machado et al., 2008; Goit´ıa & Klaus, 2009; Schoereder et al., 2010, see Table S1). Currently, 1–2% of plant species have been confirmed to possess EFN and it is estimated that a further 1–2% of species remain to be discovered with EFN (Weber & Keeler, 2013). Thus, our estimates of EFN incidence in the cerrado biome are likely to be conservative, despite the above average knowledge of the species present in the system. Bioclimatic data were derived from a 30′′ gridded dataset consisting of interpolated 50-year normals from New World weather stations (Hijmans et al., 2005). Soil data were derived from a digitised version of the 0.0083 (nominally 1-km) resolution Mapa de Solos do Brasil (EMBRAPA, 1981), downloaded from the University of New Hampshire, EOS- WEBSTER Earth Science Information Partner (http://eos-webster.sr.unh.edu/home.jsp). We examined correlates of EFN richness using a generalized linear modelling approach. We modelled the proportion of EFN species at each site as a function of annual mean temperature, temperature range, and temperature seasonality (SD of temperature), annual mean precipitation, precipitation in the driest quarter, and precipitation seasonality Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 3/13 Figure 1 Woody plant species with extra-floral nectaries from the cerrados of Brazil. MATERIALS AND METHODS (A) Inga vera, Fabaceae; (B) Qualea grandiflora, Vochysiaceae; (C) Tabebuia aurea, Bignoniaceae, (D) Ouratea hexaperma, Ochnaceae; (E) Qualea grandiflora, Vochysiaceae; (F) Tabebuia aurea, Bignoniaceae. Credits: Robin Foster, The Field Museum, Chicago, USA (A, C, F); Julio Lombardi, Departamento de Botˆanica, Instituto de Biociˆencias de Rio Claro, Universidade Estadual Paulista, SP, Brazil (D); Gustavo Schimizu, Dept. Plant Biology, Institute of Biology/Unicamp, Campinas, SP, Brazil (B, E). Figure 1 Woody plant species with extra-floral nectaries from the cerrados of Brazil. (A) Inga vera, Fabaceae; (B) Qualea grandiflora, Vochysiaceae; (C) Tabebuia aurea, Bignoniaceae, (D) Ouratea hexaperma, Ochnaceae; (E) Qualea grandiflora, Vochysiaceae; (F) Tabebuia aurea, Bignoniaceae. Credits: Robin Foster, The Field Museum, Chicago, USA (A, C, F); Julio Lombardi, Departamento de Botˆanica, Instituto de Biociˆencias de Rio Claro, Universidade Estadual Paulista, SP, Brazil (D); Gustavo Schimizu, Dept. Plant Biology, Institute of Biology/Unicamp, Campinas, SP, Brazil (B, E). (coefficient of variation in precipitation), a broad soil classification, and total species richness. Because we expressed proportion EFN as the number of species with EFNs out of the total species richness per site, we used a binomial error structure. All explanatory variables were rescaled by subtracting the mean value and dividing by the standard deviation to permit comparisons among them. Finally we tested whether cerrado species with EFN were more widespread than species without EFN (a measure of the ecological success of the species). We modelled the number of occupied sites as a function of EFN incidence, using a generalised linear model with a Poisson error distribution. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 RESULTS A total of 98 tree and shrub species of the cerrado and Amazonian savannas were documented to have EFN, out of a total of 849 species (Fig. 1). These were distributed Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 4/13 Figure 2 The number of species, genera and families with (white) and without (grey) extra-floral nectaries in the cerrado of Brazil from a sample of 849 species found in 367 sites. Figure 2 The number of species, genera and families with (white) and without (grey) extra-floral nectaries in the cerrado of Brazil from a sample of 849 species found in 367 sites. among 51 genera and 30 families (Fig. 2). The families with the most species with EFN were the Fabaceae, with 31 species, followed by the Bignoniaceae (8 species), Simaroubaceae (6), Malpighiaceae (6), and Chrysobalanaceae (6) each. Total species richness per site varied from 1 to 212 (mean = 57, sd = 33), and the proportion of species with EFN at each site ranged from 0 to 58% (mean = 22%, sd = 9%, Fig. 3B). There were 39 sites without any species with EFN, and 153 sites with at least 25% of species with EFN. There was a greater proportion of species with EFN in the south and east of Brazil (Figs. 3A, 3C and 3D). In the full generalised linear model containing all bioclimatic variables, four variables had a statistically significant effect on EFN proportion (Fig. 4, P < 0.05). Total species richness, precipitation seasonality, and precipitation in the driest quarter all had negative effects on EFN proportion; temperature range had a small positive effect on EFN proportion (Figs. 3 and 5). These results indicate that cerrado sites with fewer species, lower rainfall in the driest quarter of the year and low seasonality of precipitation all had a higher proportion of species with EFNs. Sites with a greater range of temperature had a slightly greater EFN proportion. There were no statistically significant effect of soil category on EFN proportion. Of all species in the dataset, 235 species (about 28%) occurred in only one site, 556 species (66%) occurred in <10, and 778 species (92%) occurred in <100 sites. Species Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 5/13 Figure 3 Variation in the proportion of species with extra-floral nectaries (EFN) in the cerrado and Amazonian savannas of Brazil. (A) Location of sample sites. RESULTS Size of circle is proportional to the proportion of species with nectaries. (B) Proportion of species with EFN as a function of total species richness. (C) Proportion of species with EFN as a function of latitude. (D) Proportion of species with EFN as a function of longitude. Figure 3 Variation in the proportion of species with extra-floral nectaries (EFN) in the cerrado and Amazonian savannas of Brazil. (A) Location of sample sites. Size of circle is proportional to the proportion of species with nectaries. (B) Proportion of species with EFN as a function of total species richness. (C) Proportion of species with EFN as a function of latitude. (D) Proportion of species with EFN as a function of longitude. with EFN were on average slightly more widespread than species without EFN, occupying a mean of four sites as opposed to three (Fig. 6). with EFN were on average slightly more widespread than species without EFN, occupying a mean of four sites as opposed to three (Fig. 6). Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 DISCUSSION We found high variability in the incidence of species with EFN species among sites, ranging from 0 to 58%. Furthermore, we found evidence of a latitudinal gradient in EFN proportion, converse to our prediction. Sites further from the equator tended to have slightly more species with EFN than those close to the equator (Fig. 3C), implying more defences at higher latitudes. However, we found a significant longitudinal gradient as well Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Figure 4 Coefficient estimates from a binomial generalized linear model of the proportion of species with extra-floral nectaries as a function of standardised bioclimatic variables. The model also included soil type and total species richness in 367 sites in the cerrado and savanna vegetation of Brazil. Each point indicates the estimate, with thick and thin error bars indicating one and two standard deviations, respectively. Figure 4 Coefficient estimates from a binomial generalized linear model of the proportion of species with extra-floral nectaries as a function of standardised bioclimatic variables. The model also included soil type and total species richness in 367 sites in the cerrado and savanna vegetation of Brazil. Each point indicates the estimate, with thick and thin error bars indicating one and two standard deviations, respectively. (Fig. 3D), so the situation is more complex than it might appear. What factors cause such variation to occur across a reasonably consistent biome? Sites with low species richness tended to have a higher proportion of species with EFN. Whilst low richness sites may have inflated proportions EFN because each species contributes more to the overall percentage (i.e., one out of four species is obviously a larger percentage than one out of 20), it is likely that we can consider these results to have some causal implications given the potential advantage of possessing EFN especially in low diversity sites. This is because herbivores are present in any site with vegetation, so the selective pressure for effective herbivore defences like EFNs is always present as well. Further, in low diversity sites, rare species are not ‘hidden’ by common species, and species-specific herbivores can more easily encounter their particular food source. Unfortunately, no data on the abundance of species at each site are available, so we cannot test whether species with EFN are more abundant than those without. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 DISCUSSION The trends in the geographic distribution of EFNs show a greater proportion of EFNs as one moves south from the equator and east toward the Atlantic coast. This latitudinal gradient is consistent with the recent findings of Moles et al. (2011a), Moles et al. (2011b) and contrary to the idea that herbivory intensity increases toward the equator. Paleoecological evidence suggests that lower latitudes have historically displayed Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Figure 5 The proportion of species with extra-floral nectaries in 367 cerrado sites in Brazil as a function of six bioclimatic variables. Figure 5 The proportion of species with extra-floral nectaries in 367 cerrado sites in Brazil as a function of six bioclimatic variables. Figure 5 The proportion of species with extra-floral nectaries in 367 cerrado sites in Brazil as a function of six bioclimatic variables. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Figure 6 Range size of woody cerrado species with and without extra-floral nectaries. Range size was defined as the number of occupied sites out of 367 sites throughout the cerrado and Amazonian savannas of Brazil. Figure 6 Range size of woody cerrado species with and without extra-floral nectaries. Range size was defined as the number of occupied sites out of 367 sites throughout the cerrado and Amazonian savannas of Brazil. greater herbivore diversity; however, herbivory is not necessarily more intense along this same gradient (Moles et al., 2011a). A comprehensive understanding of the latitudinal distribution of herbivore defences would require further inquiry into the latitudinal distribution of herbivory and we cannot necessarily infer implications of the longitudinal gradient from this study. It is possible that the climatic differences of coastal regions may play a role. However, that is not exactly consistent with longitude. There are coastal sites around 55◦W and non-coastal sites around 45◦W. Further study would need to be devoted to the climatic differences between coastal regions and inland regions. Climate was significantly correlated with EFN proportion. Clear negative relationships existed between EFN proportion and both precipitation in the driest quarter of the year and precipitation seasonality, but no significant trend was found with total annual precipitation. This suggests that while precipitation is important, it is likely that extremes in precipitation are what drive EFN (or, more likely, ant abundance), rather than total rainfall. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 DISCUSSION This could have something to do with the effects of periods of drought on the intensity of herbivory. One possible explanation, that would need to be investigated further, is that in dry areas, herbivores get a significant portion of their hydration from the vegetation on which they feed. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Sites with a greater annual temperature range had a higher proportion of EFN than sites with a smaller range. Similar to the precipitation results, this implies that it could be the extremes that have the greatest impact on variation. Data on the relationship between the intensity of herbivory and temperature range would be required to fully understand these results. Finally, in order to fully investigate the relationship between plant defences and herbivore pressure, both sides of the equation must be determined. To date, measuring plant defences has been the more logistically possible. However, effort must be made to estimate herbivory in a consistent manner across ecosystems and biomes in order to fully elucidate the patterns and drivers of variation in plant traits. In terms of traits such as EFN, however, the relationship with insects is also of importance. No data is available on ant abundance across the cerrado, and traits such as EFN may depend more on the availability of the plant’s mutualist ants rather than herbivore pressure. Thus, plants in areas of low ant presence or diversity may have evolved rather different defence mechanisms. In conclusion, we have confirmed Moles et al.’s (2011a; 2011b) suggestion that the latitudinal gradient in plant defence traits is more complex than originally thought. At least for one specific defence mechanism (EFN) in the cerrado biome, more species of plants are defended at higher latitudes. Competing Interests The authors declare that there are no competing interests. ACKNOWLEDGEMENTS We thank James Ratter, Toby Pennington, Sam Bridgewater, and William Milliken for making the cerrado database available, as well as all the numerous fieldworkers who collected the original data. We thank Marjorie Weber for constructive comments on the manuscript. Funding John Boudouris was funded by OSU as an undergraduate research assistant. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Grant Disclosures The following grant information was disclosed by the authors: OSU. Author Contributions • John Boudouris conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper. • John Boudouris conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 • Simon A. Queenborough conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper. Supplemental Information Supplemental information for this article can be found online at http://dx.doi.org/ 10.7717/peerj.219. Supplemental information for this article can be found online at http://dx.doi.org/ 10.7717/peerj.219. 10.7717/peerj.219. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 REFERENCES Coley PD, Barone JA. 1996. Herbivory and plant defences in tropical forests. Annual Review of Ecology and Systematics 27:305–335 DOI 10.1146/annurev.ecolsys.27.1.305. D´ıaz-Castelazo C, Rico-Gray V, Oliveira PS, Cuautle M. 2004. Extra-floral nectar-mediated ant-plant interactions in the coastal vegetation of Veracruz, Mexico: richness, occurrence, seasonality, and ant foraging patterns. Ecoscience 4:472–481. D´ıaz-Castelazo C, Rico-Gray V, Ortegaq F, Angeles G. 2005. Morphological and secretory characterization of extrafloral nectaries in plants of coastal Veracruz, Mexico. Annals of Botany 96:1175–1189 DOI 10.1093/aob/mci270. EMBRAPA. 1981. Minist´erio da Agricultura, Instituto Brasileiro de Desenvolvimento Florestal, Secret´aria de Planejamento e Coordenac¸˜ao da Presidˆencia da Republica, Fundac¸˜ao Instituto Brasileiro de Geografia e Estat´ıstica - IBGE. Coordinated and planned by MN Camargo and executed together with J Olmos IL, F Palmieri, TE Rodrigues, PKT Jacomine, EP Mothci, RO Potter, AP de Carvalho, MJ Rauen, HG dos Santos, SCP Pessoa, JAM do Amaral. Available at http://eos-webster.sr.unh.edu/home.jsp (accessed 5 March 2012). Fiala B, Linsenmair KE. 1995. Distribution and abundance of plants with extra-floral nectaries in the woody flora of a lowland primary forest in Malaysia. Biodiversity and Conservation 4:165–182 DOI 10.1007/BF00137783. Goit´ıa W, Klaus J. 2009. Ant-plant association in different forests in Venezuela. Neotropical Entomology 38:7–31 DOI 10.1590/S1519-566X2009000100002. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A. 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25:1965–1978 DOI 10.1002/joc.1276. Jones DA, Keymer RJ, Ellis WM. 1978. Cyanogenesis in plants and animal feeding. In: Harborne JB, ed. Biochemical aspects of plant and animal coevolution. London: Academic Press, 21–43. Keeler KH. 1980. Distribution of plants with extra-floral nectaries in temperate communities. American Midland Naturalist 104:274–280 DOI 10.2307/2424866. Keeler KH. 2008. World list of plants with extra-floral nectaries. Available at http://bsweb.unl.edu/ Emeriti/keeler/extra-floral/Cover.htm (accessed February 2012). Machado SR, Morellato LPC, Sajo MG, Oliveira PS. 2008. Morphological patterns of extra-floral nectaries in woody plant species of the Brazilian cerrado. Plant Biology 10:660–673 DOI 10.1111/j.1438-8677.2008.00068.x. Marazzi B, Endress PK, Paganucci de Queiroz L, Conti E. 2006. Phylogenetic relationships within Senna (Leguminosae, Cassiinae) based on three chloroplast DNA regions: patterns in the evolution of floral symmetry and extrafloral nectaries. American Journal of Botany 93:288–303 DOI 10.3732/ajb.93.2.288. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 11/13 Moles AT, Bonser SP, Poore AGB, Wallis IR, Foley WJ. 2011a. Assessing the evidence for latitudinal gradients in plant defence and herbivory. Functional Ecology 25:380–388 DOI 10.1111/j.1365-2435.2010.01814.x. REFERENCES Moles AT, Wallis IR, Foley WJ, Warton DI, Stegen JC, Bisigato AJ, Cella-Pizarro L, Clark CJ, Cohen PS, Cornwell WK, Edwards W, Ejrnæs R, Gonzales-Ojeda T, Graae BJ, Hay G, Lumbwe FC, Maga˜na-Rodr´ıguez B, Moore BD, Peri PL, Poulsen JR, Veldtman R, von Zeipel H, Andrew NR, Boulter SL, Borer ET, Camp´on FF, Coll M, Farji-Brener AG, De Gabriel J, Jurado E, Kyhn LA, Low B, Mulder CPH, Reardon-Smith K, Rodr´ıguez-Vel´azquez J, Seabloom EW, Vesk PA, van Cauter A, Waldram MS, Zheng Z, Blendinger PG, Enquist BJ, Facelli JM, Knight T, Majer JD, Mart´ınez-Ramos M, McQuillan P, Prior LD. 2011b. Putting plant resistance traits on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist 191:777–788 DOI 10.1111/j.1469-8137.2011.03732.x. Oliveira PS, Fraitas AVL. 2004. Ant-plant-herbivore interactions in the neotropical cerrado savanna. Naturwissenschaften 91:557–570 DOI 10.1007/s00114-004-0585-x. Oliveira PS, Leit˜ao-Filho HF. 1987. Extra-floral nectaries: their taxanomic distribution and abundance in the woody flora of cerrado vegetation in southeast Brazil. Biotropica 19:140–148 DOI 10.2307/2388736. Oliveira PS, Marquis RJ (eds.) 2002. The Cerrados of Brazil. Ecology and natural history of a Neotropical savanna. New York, NY, USA: Columbia University Press. Oliveira PS, Oliveira-Filho TA. 1991. Distribution of extrafloral nectaries in the woody flora of tropical communities in western Brazil. In: Price PW, Lewinsohn TM, Fernandes GW, Benson WW, eds. Plant-animal interactions: evolutionary ecology in tropical and temperate regions. New York, New York, USA: John Wiley and Sons, Inc., 163–175. Pemberton RW. 1998. The occurrence and abundance of plants with extra-floral nectaries, the basis for herbivore defensive mutualisms, along a latitudinal gradient in east Asia. Journal of Biogeography 25:661–668 DOI 10.1046/j.1365-2699.1998.2540661.x. Pennington RT, Lewis GP, Ratter JA. 2006. Neotropical savannas and dry forests: plant diversity, biogeography and conservation, Systematics Association Special Volumes, Volume 69. Boca Raton, FL, USA: CRC Press/Taylor & Francis. Pennington TD, Reynel C, Daza A. 2004. Illustrated guide to the trees of Peru. Sherborne, Dorset: David Hunt. Ratter JA, Bridgewater S, Ribeiro JF. 2003. Analysis of the floristic composition of the Brazilian cerrado vegetation III: comparison of the woody vegetation of 376 areas. Edinburgh Journal of Botany 60:57–109 DOI 10.1017/S0960428603000064. Ratter JA, Bridgewater S, Ribeiro JF, Fonseca-Filho J, Rodrigues da Silva M, Milliken W, Pullan M, Pott A, Oliveira-Filho AT, Durigan G, Pennington RT. 2010. Analysis of the floristic composition of the Brazilian cerrado vegetation IV: presentation of a Revised Data-Base of 367 Areas. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 Vasquez MR. 1997. Fl´orula de las reserves biol´ogicas de Iquitos, Per´u. Monographs in Systematic Botany from the Missouri Botanical Garden. MOBOT, St. Louis, MO, USA. Vasquez MR. 1997. Fl´orula de las reserves biol´ogicas de Iquitos, Per´u. Monographs in Systematic Botany from the Missouri Botanical Garden. MOBOT, St. Louis, MO, USA. Weber MG, Keeler KH. 2013. The phylogenetic distribution of extrafloral nectaries in plants. Annals of Botany 111:1251–1261 DOI 10.1093/aob/mcs225. Weber MG, Keeler KH. 2013. The phylogenetic distribution of extrafloral nectaries in plants. Annals of Botany 111:1251–1261 DOI 10.1093/aob/mcs225. REFERENCES Available at http://www.cerrado.rbge.org.uk (accessed 20 February 2012) unpublished manuscript. Schemske DW, Mittelbach GG, Cornell HV. 2009. Is there a latitudinal gradient in the importance of biotic interactions? Annual Review of Ecology, Evolution, and Systematics 40:245–269 DOI 10.1146/annurev.ecolsys.39.110707.173430. Schoereder JH, Sobrinho TG, Madureira MS, Ribas CR, Oliveira PS. 2010. The arboreal ant community visiting extra-floral nectaries in the Neotropical cerrado savanna. Terrestrial Arthropod Reviews 3:3–27 DOI 10.1163/187498310X487785. Boudouris and Queenborough (2013), PeerJ, DOI 10.7717/peerj.219 12/13 13/13
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Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization
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Edmunds, G. L., Wong, C. C. W., Ambler, R., Milodowski, E. J., Alamir, H., Cross, S. J., Galea, G., Wülfing, C., & Morgan, D. J. (2022). Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization. Communications Biology, 5(1), Article 9. Advance online publication. https://doi.org/10.1101/2021.05.20.444944v1, https://doi.org/10.1038/s42003-021-02972-8 Edmunds, G. L., Wong, C. C. W., Ambler, R., Milodowski, E. J., Alamir, H., Cross, S. J., Galea, G., Wülfing, C., & Morgan, D. J. (2022). Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization. Communications Biology, 5(1), Article 9. Advance online publication. https://doi.org/10.1101/2021.05.20.444944v1, https://doi.org/10.1038/s42003-021-02972-8 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1101/2021.05.20.444944v1 10.1038/s42003-021-02972-8 This is the final published version of the article (version of record). It first appeared online via Nature Research at https://doi.org/10.1038/s42003-021-02972-8 . Please refer to any applicable terms of use of the publisher. This is the final published version of the article (version of record). It first appeared online via N https://doi.org/10.1038/s42003-021-02972-8 . Please refer to any applicable terms of use of the 1 School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK. 2 Bristol Veterinary School, University of Bristol, Bristol BS40 5DU, UK. 3 Wolfson BioImaging Facility, University of Bristol, Bristol BS8 1TD, UK. 4These authors jointly supervised this work: Christoph Wülfing and David J. Morgan. ✉email: Christoph.Wuelfing@bristol.ac.uk; D.J.Morgan@bristol.ac.uk University of Bristol – Bristol Research Portal General rights University of Bristol – Bristol Research Portal General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/brp-terms/ COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization The effects of PD-1 and CTLA-4 blockade on T cell priming may be critical in the development of autoimmune side effects by allowing self-reactive T cells to activate. PD-1 and CTLA-4 blockade are most effective in patients that already have tumors with a substantial immune infiltrate rich in CD8+ T cells13, limiting the applicability of PD-1 and CTLA-4 blockade across many cancer types. Thus, means to enhance anti-tumor immunity that focuses more strongly on (re)activation of CTL and/or enhancing tumor infiltration rather than on the priming of new T cell clones are of substantial interest in the develop- ment of a diverse combinatorial tool kit for curative cancer immunotherapy. Here we aim to determine whether effectors of tumor-mediated immune suppression can directly regulate the killing of tumor target cells by CTL. We complement an in vivo tumor model with a matching in vitro reconstruction of the tumor microenviron- ment based on the interaction of tumor spheroids with CTL in the absence of any other cell types7,30,31: Murine renal carcinoma cells expressing the hemagglutinin (HA) protein from influenza virus A/PR/8 as neo-tumor-specific antigen (RencaHA) are effectively recognized by the immune system in vivo and generate an immune-suppressive tumor microenvironment. Recognition of Renca tumors can be enhanced with the adoptive transfer of CL4 T cell receptor transgenic CTL recognizing an HA-derived peptide. In vitro, RencaHA cells cultured in three-dimensional spheroids effectively interact with CL4 CTL such that the sup- pressed phenotype acquired in this in vitro interaction closely matches that acquired by adoptively transferred CL4 CTL in vivo7. A key element of the mechanism of the impaired killing ability of tumor-suppressed CTL is the reduced ability of CTL to execute the cytoskeletal polarization steps required for effective target cell killing7. g g Blocking A2AR partially reduced RencaHA tumor growth in vivo. Upon A2AR blockade TIM3 was highly upregulated amongst CD8+ TIL. Combing in vivo blockade of A2AR with that of TIM3 further reduced tumor growth in the context of the adoptive transfer of CL4 T cells. This combined treatment par- tially restored the ability of CTL to polarize towards their tumor target cells and enhanced tumor infiltration of CTL. In vitro, overexpression of TIM3 by CL4 CTL and treatment with an A2AR agonist inhibited killing of tumor cells in tumor spheroids and the A2AR agonist also reduced spheroid infiltration by CTL. Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization Grace L. Edmunds1, Carissa C. W. Wong1, Rachel Ambler1, Emily J. Milodowski2, Hanin Alamir1, Stephen J. Cross 3, Gabriella Galea 1, Christoph Wülfing 1,4✉& David J. Morgan 1,4✉ Tumors generate an immune-suppressive environment that prevents effective killing of tumor cells by CD8+ cytotoxic T cells (CTL). It remains largely unclear upon which cell type and at which stage of the anti-tumor response mediators of suppression act. We have combined an in vivo tumor model with a matching in vitro reconstruction of the tumor microenvironment based on tumor spheroids to identify suppressors of anti-tumor immunity that directly act on interaction between CTL and tumor cells and to determine mechanisms of action. An ade- nosine 2A receptor antagonist, as enhanced by blockade of TIM3, slowed tumor growth in vivo. Engagement of the adenosine 2A receptor and TIM3 reduced tumor cell killing in spheroids, impaired CTL cytoskeletal polarization ex vivo and in vitro and inhibited CTL infiltration into tumors and spheroids. With this role in CTL killing, blocking A2AR and TIM3 may complement therapies that enhance T cell priming, e.g. anti-PD-1 and anti-CTLA-4. 1 School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK. 2 Bristol Veterinary School, University of Bristol, Bristol BS40 5DU, UK. 3 Wolfson BioImaging Facility, University of Bristol, Bristol BS8 1TD, UK. 4These authors jointly supervised this work: Christoph Wülfing and David J. Morgan. ✉email: Christoph.Wuelfing@bristol.ac.uk; D.J.Morgan@bristol.ac.uk 1 ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 C C D8+ cytotoxic T cells (CTL) have the ability to directly kill tumor target cells. Such killing requires effective priming of tumor antigen specific CD8+ T cells within the draining lymph nodes; differentiation into CTL; effective tumor infiltration and execution of the cytolytic effector function within the tumor microenvironment. However, solid tumors often generate an immune-suppressive environment with multiple often redundant immune-suppressive elements that prevent effective tumor cell killing. For the development of widely applicable curative cancer immunotherapies, multiple reagents with defined mechanisms of action that can be flexibly combined are required, at least some of which need to restore CTL killing within the tumor1. Here we have characterized two such reagents. all detectable20. A2AR blockade or T cell-specific deletion enhances anti-tumor immunity in many models, often with enhanced CTL tumor infiltration21–24. The localized generation of adenosine and its role in tumor infiltration make adenosine an attractive target as a regulator of tumor immunity with a direct focus on the tumor microenvironment. Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization Expression of the inhibitory receptor TIM3 increases with repeated T cell stimulation25 reaching particularly high levels in tumors. High TIM3 expression in tumors is related to poor overall survival26. Blocking TIM3 can enhance anti-tumor immunity, in particular in combination with anti-PD-1 or chemotherapy27. While TIM3 is highly expressed on CD8+ TIL, TIM3 also regulates myeloid cell function, is highly expressed on CD4+ Tregs in tumors and TIM3 signaling can display features of costimulation, such as activation of Akt/mTOR28,29. Even though the mechanism of action of TIM3 thus remains unresolved, its preferential expression on CD8+ TIL makes it an attractive candidate for a direct regulator of the interaction between CTL and their tumor target cells. g Inhibitory receptors, in particular CTLA-4, PD-1, TIGIT, TIM3, and LAG3, impair the anti-tumor immune response2,3. Blocking CTLA-4 and PD-1 is a cornerstone of current immu- notherapy and has yielded great therapeutic success in many cancer types4. However, efficacy is limited to a subset of patients and few tumor types, and autoimmune side effects can be substantial. Mechanisms of action of PD-1 blockade are still being debated. Initially, it was widely assumed that blocking PD- 1 would reactive tumor-infiltrating CTL (TIL) that had acquired a suppressed state characterized by enhanced PD-1 expression. However, PD-1 and also CTLA-4 are expressed not only on CTL but also on other T cell subtypes, other immune cell types, and even on tumor cells. Deletion of PD-1 in myeloid cells can enhance anti-tumor immunity more effectively than deletion in T cells5. In basal or squamous cell carcinoma patients, PD-1 blockade does not reactivate tumor-resident CTL but leads to infiltration of new CTL clones6. We have shown that treating mice with anti-PD-1 enhances anti-tumor immunity but treat- ing TIL directly ex vivo does not enhance their function7, fur- ther arguing for an effect independent of the direct CTL tumor cell interaction. Ligands of CTLA-4 are expressed on antigen- presenting cells in T cell priming but not commonly on tumor cells. Therefore, CTLA-4 blockade is more likely to enhance T cell priming rather than reactivate TIL. Potential depletion of regulatory T cells mediated by the anti-CTLA-4 Fc region, even though controversial, can also be expected to affect priming8–11 and illustrates the wider functional consequences of Fc receptor engagement by antibodies against inhibitory receptors12. Adenosine 2A receptor and TIM3 suppress cytolytic killing of tumor cells via cytoskeletal polarization An A2AR agonist suppressed cytoskeletal polarization of CTL during both migration and coupling to tumor target cells. Interference with cytoskeletal polarization thus is a potential mechanism by which A2AR and TIM3 may directly suppress the killing of tumor cells by CTL. Key soluble mediators of tumor-mediated immune suppres- sion are adenosine and prostaglandin E2 (PGE2). Both use an increase in intracellular cyclic AMP (cAMP) as a key signaling mechanism and may, therefore, have overlapping functions14,15. PGE2 strongly regulates dendritic cell biology and thus T cell priming16. Adenosine is generated by hydrolysis of extracellular ATP by the ectoenzymes CD39 and CD7317 the expression of which is increased in hypoxic and immunosuppressive tissue environments18. Adenosine concentrations are therefore greatly enhanced in the tumor microenvironment14,19. Adenosine sig- nals through a family of four adenosine receptors14,15. The adenosine 2A receptor (A2AR) is highly expressed in T cells, whereas mRNA for the other three isoforms is barely or not at COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Fig. 1 Schematic representation of the experimental system. The different experimental strategies used are illustrated on the left with a list of corresponding experiments and figures shown for each on the right. tation of the experimental system. The different experimental strategies used are illustrated on the left with a list of and figures shown for each on the right. Fig. 1 Schematic representation of the experimental system. The different experimental strategies used are illustrat corresponding experiments and figures shown for each on the right. intraperitoneally with 10 mg/kg of the A2AR antagonist ZM 241385 every 4 days (Fig. 1)32,33. Comparison with other emulsified compounds of a similar molecular weight suggests that such treatment led to a peak blood concentration of ZM 241385 in the low µM range with a half-life of about 1 h34. At that peak concentration, ZM 241385 inhibits both A2AR and A2BR35. However, A2AR mRNA expression in T cells is several-fold higher than that of A2BR; A2AR-deficient lymphocytes do not elevate cAMP in response to adenosine any more20 and ZM 241385 displays >50-fold selectivity for A2AR over A2BR as detailed in the methods section. For the remainder of the manuscript we, therefore, refer to ZM 241385 as an A2AR antagonist. Under control conditions, tumors grew from 150 ± 25 mm3 at day 12, the start of treatment, to 2075 ± 290 mm3 within 8 days with two mice sacrificed early as their tumors exceeded maximum allowable tumor volume. ZM 241385 treatment resulted in a reduction in tumor growth from 140 ± 35 mm3 to only 715 ± 85 mm3 over 8 days with no mice needing to be sacrificed (p < 0.01) (Fig. 2b). These data establish a partial role of A2AR in suppressing anti-tumor immunity in the RencaHA model. response and an immune-suppressive TME when grown sub- cutaneously in mice. The T cell receptor (TCR) of T cells from CL4 TCR transgenic mice recognizes the HA peptide 518–526 (IYST- VASSL) as restricted by H-2Kd. Upon adoptive transfer into RencaHA tumor-bearing mice, CL4 CTL infiltrates the tumor and acquires a suppressed phenotype7. Incubation of in vitro primed CL4 CTL with RencaHA tumor cells grown as three-dimensional spheroids induces a suppressed CTL phenotype that shares key features with tumor-infiltrating CL4 T cells7. Results An experimental approach to identify direct suppressors of CTL killing of tumor target cells. Enhancing the ability of CTL to kill tumor target cells within the tumor microenvironment (TME) is of immense therapeutic interest. To identify immunosuppressive factors that act directly on CTL within the TME, we combined in vivo mouse studies with matched direct investigation of the interaction of CTL with tumor spheroids in vitro (Fig. 1)7,30,31: Renca renal carcinoma cells expressing influenza A/PR/8/H1N1 hemagglutinin (HA) induce an endogenous anti-tumor immune COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 2 ARTICLE COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 ARTICLE To identify combinations of inhibitory receptor expression altered upon A2AR blockade, we used a principal component analysis. Input data were the percentage of T cells expressing inhibitory receptors in all combinations and tumor size (Fig. 2c, d, Supplementary Fig. 1b). Principal component (PC) 1 effectively PC1 were therefore positively associated with A2AR antago of TIL. TIM3 expression was upregulated in combination other inhibitory receptors by A2AR antagonist treatment contributed to PC1 with p < 0.001. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Thus, we could characterize tumor-associated immunosuppression of CD8+ T cells in parallel in the in vivo tumor model to establish phy- siological relevance and in the in vitro spheroids to establish direct effects on the interaction of CTL with tumor cells in the absence of other immune cells. The adenosine 2A receptor suppresses anti-tumor immunity. High concentrations of adenosine occur within many solid tumors. CD4+FoxP3+ regulatory T cells (Tregs) express the adenosine- generating ectoenzymes CD39 and CD73 as an important means of in situ adenosine generation. Within TIL from RencaHA tumor- bearing mice 86 ± 2% of CD25+FoxP3+CD4+ T cells expressed both CD39 and CD73 (Fig. 2a). CD25+CD4+ TIL from RencaHA tumor-bearing mice suppressed in vitro proliferation of naïve CL4 T cells in a manner dependent on the adenosine 2A receptor (A2AR) (Supplementary Fig. 1a). This in vitro generation of func- tionally relevant amounts of adenosine by CD25+FoxP3+CD4+ TIL suggests that these cells can also generate elevated adenosine concentrations in the RencaHA TME. TIM3 expression is enhanced on CTL upon in vivo A2AR blockade. The only partial nature of the suppression of tumor growth upon A2AR blockade suggests that other elements of tumor-mediated immune suppression may synergize with A2AR engagement or are even upregulated to compensate for A2AR blockade. We, therefore, determined the expression of inhibitory receptors: TIM3, TIGIT, LAG3, PD-1, and adenosine-producing ectoenzymes: CD39 and CD73 by both CD8+ and CD4+ TIL from ZM 241385-treated and control tumors. To determine whether A2AR suppresses anti-tumor immunity in the RencaHA model, we treated RencaHA tumor-bearing mice COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 3 3 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 PD-1 and TIGIT expre were also strongly associated with PC1, albeit TIGIT TIM3 TIGIT LAG3 PD-1 CD39 CD73 CD8β Label Positively Expressed P-value Drivers of PC1 8 CD8: any except CD39 1.6E-13 46 CD8+CD73+LAG3+PD-1+TIGIT+TIM3+ 2.8E-15 47 CD8+CD73+LAG3+PD-1+TIGIT+ 6.4E-17 71 CD8+PD-1+TIGIT+ 4.6E-11 84 CD4+: any except CD39 7.1E-12 123 CD4+CD73+LAG3+PD-1+TiIGIT+ 1.1E-14 124 CD4+CD73+LAG3+PD-1+TIGIT-TIM3+ 5.2E-17 132 CD4+CD73+PD-1+TIGIT-TIM3+ 5.4E-11 138 CD4+LAG3+PD-1+TIGIT+TIM3+ 4.9E-14 146 CD4+PD-1+TIGIT+TIM3+ 6.0E-13 148 CD4+PD-1+TIGIT-TIM3+ 1.6E-11 150 CD4+TIGIT+TIM3+ 8.7E-21 Opposers of PC 1 2 CD8: CD39+ with any other 1.6E-13 27 CD8+CD39+CD73+TIGIT+ 0.002 43 CD8+CD39+TIGIT+ 0.015 78 CD4: CD39+ with any other 7.1E-12 102 CD4+CD39+CD73+TIGIT+TIM3+ 0.0005 137 CD4+CD73+ 0.0005 Drivers of PC2 106 CD4+CD39+LAG3+PD-1+TIGIT+TIM3+ 9.8E-14 121 CD4+CD39+ 6.4E-13 Opposers of PC2 27 CD8+CD39+CD73+TIGIT+ 6.3E-9 43 CD8+CD39+TIGIT+ 1.4E-10 102 CD4+CD39+CD73+TIGIT+TIM3+ 1.0E-7 137 CD4+CD73+ 1.2E-7 Foxp3 CD25 CD39 CD73 a b c d vehicle only ZM 241385 vehicle only ZM 241385 CD8β 150 124 47 12346 84 78 138 146 121 27 2 8 43 102 132 137 148 71 106 −5 0 5 0 10 20 Dim1 (24.7%) Dim2 (16.5%) Tx Control ZM PCA − Biplot ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02 TIM3 PD-1 CD8β c Foxp3 CD25 CD39 CD73 a a c LAG3 vehicle only CD8β Foxp3 CD39 CD73 ZM 241385 PD-1 CD CD73 vehicle only PD-1 CD39 CD73 PD-1 CD8β CD39 b vehicle only b d CD8β ZM 241385 ZM 241385 d Label Positively Expressed Drivers of PC1 8 CD8: any except CD39 46 CD8+CD73+LAG3+PD-1+T 47 CD8+CD73+LAG3+PD-1+T 71 CD8+PD-1+TIGIT+ 84 CD4+: any except CD39 123 CD4+CD73+LAG3+PD-1+T 124 CD4+CD73+LAG3+PD-1+T 132 CD4+CD73+PD-1+TIGIT-T 138 CD4+LAG3+PD-1+TIGIT+T 146 CD4+PD-1+TIGIT+TIM3+ 148 CD4+PD-1+TIGIT-TIM3+ 150 CD4+TIGIT+TIM3+ Opposers of PC 1 2 CD8: CD39+ with any othe 27 CD8+CD39+CD73+TIGIT+ 43 CD8+CD39+TIGIT+ 78 CD4: CD39+ with any othe 102 CD4+CD39+CD73+TIGIT+ 137 CD4+CD73+ Drivers of PC2 106 CD4+CD39+LAG3+PD-1+T 121 CD4+CD39+ Opposers of PC2 27 CD8+CD39+CD73+TIGIT+ 43 CD8+CD39+TIGIT+ 102 CD4+CD39+CD73+TIGIT+ 137 CD4+CD73+ d 150 124 47 12346 84 78 138 146 121 27 2 8 43 102 132 137 148 71 106 −5 0 5 0 10 20 Dim1 (24.7%) Dim2 (16.5%) Tx Control ZM PCA − Biplot d 150 124 47 12346 84 78 138 146 121 27 2 8 43 102 132 137 148 71 106 −5 0 5 0 10 20 Dim1 (24.7%) Dim2 (16.5%) PCA − Biplot To identify combinations of inhibitory receptor expression altered upon A2AR blockade, we used a principal component analysis. ARTICLE Only in the largest tumors, >1,000 mm3, did inhibitory receptor expression in TIL start to increase as an additional suppressive mechanism (Supplementary Fig. 1c). Conversely, amongst A2AR-blocked tumors, TIL inhibitory receptor expression was already high in smaller tumors, providing an alternate means of suppression in the absence of A2AR (Supplementary Fig. 1c). Together these data suggest that RencaHA tumors rely strongly on A2AR for immune suppression with compensatory upregulation of inhibitory receptor expression upon A2AR blockade. TIM3 enhances suppression of CD8+ T cell-dependent anti- tumor immunity by A2AR. To investigate immunosuppressive synergy between A2AR and TIM3, groups of BALB/c mice bearing 12-day old RencaHA tumors were treated with the A2AR antagonist ZM 241385 plus or minus the anti-TIM3 blocking mAb RMT3-23 (Fig. 1). For precise temporal synchronization and a standardized number of anti-tumor CTL, we used i.v. double adoptive T cell transfer (ATT) of 5 × 106 CL4 TCR transgenic CTL on days 12 and 14. We observed three phases of tumor growth upon treatment, an initial ‘growth’ phase of 6 days, a ‘response’ phase of 8 days, and a subsequent open-ended ‘relapse’ phase (Fig. 3a). As an overall outcome measure, we determined a ratio of the final tumor volume after growth, response, and relapse to initial tumor volume at the start of treatment. Adoptive transfer of CL4 CTL plus both ZM 241385 and anti-TIM3 mAb gave a significant (p < 0.05) reduction in the average final to initial tumor volume ratio compared with mice receiving adoptive CL4 T cell transfer plus ZM 241385 only. TIM3 thus enhanced suppression of anti-RencaHA tumor immunity by A2AR (Fig. 3b). To elucidate mechanisms of the prevention of tumor relapse, we determined T cell persistence. After the initial response phase adoptively transferred Thy1.1+ CL4 CTL were only detected in mice from the ZM 241385 plus anti-TIM3 mAb group. They could also be expanded by a booster immunization with the HA peptide in mice receiving only CL4 CTL (Fig. 4a, Supplementary Fig. 2a). However, Thy1.1+ CL4 CTL were not detected in the group treated with ZM 241385 alone, with or without a booster immunization, consistent with the high relapse rate of 8/10. To determine the role of persistent CD8+ T cells in tumor immunity, we depleted them. In mice with complete and durable tumor remission lasting >8 days, only five out of 19 mice experienced relapsed (Fig. 4b). ARTICLE As TIM3 is more likely to directly affect the interaction of CTL with their tumor cell targets as discussed in the introduction, we selected TIM3 blockade as an adjunct treatment to improve responses to A2AR-antagonism. Expression of various combinations of inhibitory receptors by CD4+ TIL was also associated with A2AR antagonist treatment, as not further pursued here because of our focus on the direct interaction between CD8+ CTL and tumor target cells. TIM3 mAb resulted in a marked reduction in tumor growth relative to mice given either CL4 T-cells alone or CL4 CTL plus ZM 241385 (Fig. 3c) suggesting that TIM3 enhances suppression of anti-RencaHA tumor immunity by A2AR already in this early phase of tumor growth. g In the ‘response’ phase, between days 20 and 26, most tumors regressed in all treatment groups. Comparing this regression to the continued RencaHA tumor growth in the absence of CL4 CTL adoptive transfer (Figs. 2b, 3a), the regression can be attributed to the transferred CL4 CTL. Mice in which tumors regressed were categorized as ‘responders’. The percentage of responder mice did not differ between the treatment groups (Fig. 3d). We then defined ‘relapse’ as tumors reaching a volume ≥the starting volume. When analyzing all mice, relapse was slightly delayed in mice treated with ZM 241385 and anti- TIM3 mAb without reaching statistical significance (Fig. 3e). When analyzing relapse only in responders, relapse frequencies differed substantially with treatment. Upon adoptive transfer of CL4 CTL alone, 8/17 tumors relapsed within 26 days of regression. Upon treatment with adoptive transfer of CL4 CTL and ZM 241385, tumor relapse occurred in 8/10 responder mice. However, when anti-TIM3 mAb was used in combination with ZM 241385 plus adoptive transfer of CL4 CTL, only 3/12 mice underwent relapse after regression (p < 0.05 compared to treatment with CL4 adoptive transfer plus ZM 241385). Thus, blocking A2AR together with TIM3 decreased RencaHA tumor relapse. g PC2 separated TIL by the volume of the tumor they are derived from, with larger tumors associating positively with PC2. This highlights the importance of accounting for tumor volume when assessing immune profiles. CD39 expression strongly drove PC2 while opposing PC1. This indicates that with increasing size control tumors relied more on adenosine for immune suppres- sion as opposed by A2AR antagonism. ARTICLE ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Fig. 2 An A2AR antagonist delays in vivo tumor growth and triggers compensatory upregulation of T cell inhibitory receptors. a TIL from RencaHA tumor-bearing BALB/c mice was stained with anti-CD25, anti-FoxP3, anti-CD39, and anti-CD73 mAb. On the left and in the middle, representative flow cytometry data are shown. On the right, percentage TIL expressing CD39 and CD73 are given as mean ± SEM for N = 6 experiments. b Mean RencaHA tumor volume is given ± SEM in BALB/c mice after s.c. injection of 1 × 106 RencaHA tumor cells on day 0 and i.p. injection with ZM 241385 when tumors had reached 5 mm diameter in any one direction (day 12–14) and further treatments administered every other day as indicated (linear mixed model to perform repeated measures ANOVA. **p < 0.01). N = 26 treated mice and 20 control mice over four separate experiments. c CD45+ cells from the RencaHA tumor-bearing mice treated with ZM 241385 or vehicle control in b were stained using mAbs against CD8, CD4, CD39, CD73, TIM3, TIGIT, LAG3, and PD-1. Representative flow cytometry data are shown. The gating strategy for the identification of CD8+ TIL is given in Supplementary Fig. 1b. d The outcome of a principal component analysis is given with input data of percentage expression of markers in c in each combination of the eight markers, representing 308 variables, and tumor volume as an additional variable. Each triangle (ZM 241385-treated) or circle (control-treated) represents an individual tumor-bearing mouse. Large symbols represent the average position of treated and control mice along PC1 with ellipses showing 95% confidence intervals. The 24 variables making the greatest contribution to principal component (PC) 1 and 2 are overlaid as numbered vectors and are listed in the table. Entire FACS data are available as detailed in the data availability statement. Source data are provided in Supplementary Data 1. A2AR blockade. As TIM3 is more likely to directly affect the interaction of CTL with their tumor cell targets as discussed in the introduction, we selected TIM3 blockade as an adjunct treatment to improve responses to A2AR-antagonism. Expression of various combinations of inhibitory receptors by CD4+ TIL was also associated with A2AR antagonist treatment, as not further pursued here because of our focus on the direct interaction between CD8+ CTL and tumor target cells. A2AR blockade. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Input data were the percentage of T cells expressing inhibitory receptors in all combinations and tumor size (Fig. 2c, d, Supplementary Fig. 1b). Principal component (PC) 1 effectively distinguished TIL from ZM 241385-treated and control mice (95% confidence ellipses are shown). Variables that contribute to To identify combinations of inhibitory receptor expression altered upon A2AR blockade, we used a principal component analysis. Input data were the percentage of T cells expressing inhibitory receptors in all combinations and tumor size (Fig. 2c, d, Supplementary Fig. 1b). Principal component (PC) 1 effectively distinguished TIL from ZM 241385-treated and control mice (95% confidence ellipses are shown). Variables that contribute to PC1 were therefore positively associated with A2AR antagonism of TIL. TIM3 expression was upregulated in combination with other inhibitory receptors by A2AR antagonist treatment and contributed to PC1 with p < 0.001. PD-1 and TIGIT expression were also strongly associated with PC1, albeit TIGIT both amongst drivers and opposers. Thus, upregulation of the expression of PD-1 and TIM3 is most strongly associated with PC1 were therefore positively associated with A2AR antagonism of TIL. TIM3 expression was upregulated in combination with other inhibitory receptors by A2AR antagonist treatment and contributed to PC1 with p < 0.001. PD-1 and TIGIT expression were also strongly associated with PC1, albeit TIGIT both amongst drivers and opposers. Thus, upregulation of the expression of PD-1 and TIM3 is most strongly associated with COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 4 4 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 c R-values representing the growth rate of tumors in a, between 12 and 16 days, are given with the mean ± SEM (independent two-sample t-test). d Proportion of tumors across all experimental replicates in a which were regressed are given as bars ±SEM with proportion in individual experimental replicates as dots. Neither analysis of pooled data using Fisher’s exact Boschloo test nor of experimental replicates using 1-way ANOVA yield significant differences. e Progression free survival of mice in a is given. Cox Proportional Hazards Regression analysis. Treatment did not significantly predict progression free survival: (p = 0.24 ATT control; p = 0.40 ATT + A2AR-Antagonist; p = 0.30 ATT + A2AR-Antagonist + Anti-TIM3 mAb). Hazard ratio of progression versus Control was as follows: ATT + A2AR-Antagonist = 0.36 (0.61 ± 3.38), ATT + A2AR-Antagonist + Anti-TIM3 mAb = −0.53 (0.21 ± 1.63). Source data are provided in Supplementary Data 2. in a T cell-dependent fashion. The mechanism underpinning the immune-enhancing effect of such treatment in the initial anti- tumor response is the focus of the remainder of this manuscript. (Fig. 5a). Less than 30% of in vitro primed control CL4 CTL display such lamellae even after 15 min of cell contact; whereas, all TIL from control-treated tumors do so within 7 min (Fig. 5b). Following treatment of mice with the A2AR antagonist ZM 241385 plus blocking anti-TIM3 mAb off-interface lamellae formed later, with the median time of first off-interface lamellae formation delayed from 100 s to 220 s. 11% of cell couples did not show any off-interface lamellae at all (Fig. 5b). Another hallmark of defective TIL cytoskeletal polarization is T cell translocation over the tumor cell surface away from the site of initial coupling (Fig. 5c). While almost completely absent in in vitro primed control CTL, 71 ± 9% of TIL displayed such translocation (Fig. 5d, e). This frequency was significantly (p < 0.001) reduced to 37 ± 9% and 23 ± 7% upon tumor treat- ment with ZM 241385 alone or in combination with anti-TIM3 mAb, respectively. Data from these restoration experiments establish that A2AR, as enhanced by TIM3, contributes to the A2AR and TIM3 suppress the cellular polarization of CTL and tumor infiltration. Mechanisms of A2AR and TIM3 in suppres- sion of anti-tumor immunity are of interest. For effective tumor infiltration and tumor cell killing CTL need to undergo a series of cytoskeletal polarization steps. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Time from tumor injection (d) Proportion without replase c a b d e g. 3 A2AR antagonist and anti-TIM3 mAb synergistically suppress RencaHA tumor growth. a RencaHA tumor-bearing BALB/c mice were injected wice with 5 × 106 purified CL4 CTL on days 12 and 14 and treated with A2AR-antagonist, anti-TIM3 mAb, or vehicle + isotype-control antibody, as sho umor growth is displayed as mean tumor volumes + SEM with N = 42 mice over three independent experiments, with at least 11 mice per group. b tio of final to initial (day 12) tumor volume of tumors in a is given with the mean ± SEM (independent two-sample t-test). c R-values representing owth rate of tumors in a, between 12 and 16 days, are given with the mean ± SEM (independent two-sample t-test). d Proportion of tumors acros xperimental replicates in a which were regressed are given as bars ±SEM with proportion in individual experimental replicates as dots. Neither analys ooled data using Fisher’s exact Boschloo test nor of experimental replicates using 1-way ANOVA yield significant differences. e Progression free surv mice in a is given. Cox Proportional Hazards Regression analysis. Treatment did not significantly predict progression free survival: (p = 0.24 ATT con = 0.40 ATT + A2AR-Antagonist; p = 0.30 ATT + A2AR-Antagonist + Anti-TIM3 mAb). Hazard ratio of progression versus Control was as follows: TT + A2AR-Antagonist = 0.36 (0.61 ± 3.38), ATT + A2AR-Antagonist + Anti-TIM3 mAb = −0.53 (0.21 ± 1.63). Source data are provided in upplementary Data 2. b a b a Time from t Proportion without replase c d e c d Time from tumor injection (d) Proportion without replase e d e e c Proportion without replase Fig. 3 A2AR antagonist and anti-TIM3 mAb synergistically suppress RencaHA tumor growth. a RencaHA tumor-bearing BALB/c mice were injected i.v. twice with 5 × 106 purified CL4 CTL on days 12 and 14 and treated with A2AR-antagonist, anti-TIM3 mAb, or vehicle + isotype-control antibody, as shown. Tumor growth is displayed as mean tumor volumes + SEM with N = 42 mice over three independent experiments, with at least 11 mice per group. b The ratio of final to initial (day 12) tumor volume of tumors in a is given with the mean ± SEM (independent two-sample t-test). ARTICLE In addition, responder mice were resistant to tumor growth following rechallenge with tumor cells (Fig. 4c). In contrast, treatment with anti-Thy1.1 depleting mAb at 28 days induced tumor re-growth in 4/4 mice (Fig. 4d). Treatment with anti-CD8β depleting mAb resulted in tumor re-growth in 2/2 mice (Fig. 4e, Supplementary Fig. 2b) (p < 0.01 of combined depletion data versus control). Together, these data establish that response and suppression of relapse depend on the continued presence of tumor-reactive CTL. To determine at which stage of tumor growth treatment with ZM 241385 and anti-TIM3 mAb exerted its effect, we analyzed the three phases of tumor growth separately. Initial tumor growth in all mice peaked between day 14–18. The combination of adoptive transfer of CL4 CTL with both ZM 241385 and anti- Thus far, our in vivo data establish that combined treatment with ZM 241385 and anti-TIM3 mAb enhances anti-tumor immunity 5 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 The inability to effectively execute such steps characterizes tumor-infiltrating CTL7. To determine if A2AR and TIM3 regulate effective TIL polarization in the tumor microenvironment, we isolated TIL from RencaHA tumors and imaged their subsequent interaction with KdHA peptide pulsed Renca cells ex vivo. One hallmark of defective cytoskeletal TIL polarization is CTL lamellae directed away from the cellular interface with the tumor target cell to destabilize the cell couple COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 6 6 ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 ective cytoskeletal polarization of TIL. Consistent with the ortance of such CTL cytoskeletal polarization for cytolysis, tment of tumors with the A R antagonist ZM 241385 plus As an additional process requiring cytoskeletal activity examined the infiltration of endogenous CD8+ T cells and CTL into Renca tumors in vivo Such infiltration was focuse Thy1.1 Normalized cell count a b c d e 4 A2AR antagonist plus anti-TIM3 mAb diminish tumor relapse in a T cell-dependent fashion. Mouse numbers across the different parts o eriments are detailed in Supplementary Fig. 2a. a RencaHA tumor-bearing BALB/c were injected i.v. with two doses of 5 × 106 Thy1.1+ CL4 CTL ( either vehicle and isotype control, A2AR-antagonist (ZM 241385) alone or A2AR antagonist + anti-TIM3 mAb as shown. The percentage of Th TIL between days 25 and 48 is given as representative data from N = 25 mice over three independent experiments. Mice were either immunized peptide 5 days prior to TIL harvest (N = 5) to induce expansion of Thy1.1 + CL4 T cells or immunized with empty vehicle control (N = 19); on esentative graph is shown for each group. b–e Tumor growth curves from individual mice treated in Fig. 3a, which had experienced complete ble tumor remission. b untreated and c rechallenged with tumor cells at day 40; d depleted of Thy1.1+ T cells using anti-Thy1.1 depleting mA ays; e depleted of all CD8+ T cells using anti-CD8β depleting mAb at 28 days with depletion efficiency shown in Supplementary Fig. 2b. Source provided in Supplementary Data 3. Thy1.1 Normalized cell count a b b a c d d d c e e Fig. 4 A2AR antagonist plus anti-TIM3 mAb diminish tumor relapse in a T cell-dependent fashion. Mouse numbers across the different parts of the experiments are detailed in Supplementary Fig. 2a. a RencaHA tumor-bearing BALB/c were injected i.v. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 with two doses of 5 × 106 Thy1.1+ CL4 CTL (ATT) plus either vehicle and isotype control, A2AR-antagonist (ZM 241385) alone or A2AR antagonist + anti-TIM3 mAb as shown. The percentage of Thy1.1+ CL4 TIL between days 25 and 48 is given as representative data from N = 25 mice over three independent experiments. Mice were either immunized with HA peptide 5 days prior to TIL harvest (N = 5) to induce expansion of Thy1.1 + CL4 T cells or immunized with empty vehicle control (N = 19); one representative graph is shown for each group. b–e Tumor growth curves from individual mice treated in Fig. 3a, which had experienced complete and durable tumor remission. b untreated and c rechallenged with tumor cells at day 40; d depleted of Thy1.1+ T cells using anti-Thy1.1 depleting mAb at 28 days; e depleted of all CD8+ T cells using anti-CD8β depleting mAb at 28 days with depletion efficiency shown in Supplementary Fig. 2b. Source data are provided in Supplementary Data 3. As an additional process requiring cytoskeletal activity, we examined the infiltration of endogenous CD8+ T cells and CL4 CTL into Renca tumors in vivo. Such infiltration was focused on peripheral tumor regions and was enhanced upon treatment with the A2AR antagonist ZM 241385 plus blocking anti-TIM3 mAb (Fig. 5h, i). In contrast, CD4+ Treg infiltration was diminished (Fig. 5i). An enhanced ratio of CD8+ CTL to CD4+ Tregs in the tumor thus constitutes an additional potential mechanistic contribution of reduced tumor growth in mice upon blockade of the A2AR and TIM3. defective cytoskeletal polarization of TIL. Consistent with the importance of such CTL cytoskeletal polarization for cytolysis, treatment of tumors with the A2AR antagonist ZM 241385 plus blocking anti-TIM3 mAb significantly (p = 0.02) enhanced ex vivo CL4 TIL killing (Fig. 5f, g). We have also seen the restoration of CTL cytoskeletal polarization and killing upon treatment of RencaHA tumor-bearing mice with anti-PD-17. It is now of interest whether or not A2AR and TIM3, in contrast to PD-17, directly regulate the interaction between CTL and their tumor target cells. 7 7 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 d TIM3 directly inhibit the killing of tumor target cells CTL in spheroids. ARTICLE These data corroborate a cytos- keletal mechanism for A2AR-mediated suppression of TIL func- tion. They also constitute an interesting contrast to PD-1, as investigated in the same experimental system7. As CTL con- stitutively express PD-1 and Renca cells PD-L1, we used anti-PD- 1 to investigate the role of PD-1 in cytoskeletal polarization. Rather than restoring CL4 CTL and ex vivo TIL cytoskeletal polarization as expected for blocking an inhibitory interaction, anti-PD-1 increased the frequency of occurrence of off-interface lamellae and the translocation phenotype7. In addition, calcium signaling was impaired not enhanced7. The inhibition of cytos- keletal polarization in the direct interaction of CTL with their target cells by A2AR thus is in contrast to the stimulatory role of PD-1. Adenosine impairs CTL cytoskeletal polarization. Restoration of cytoskeletal polarization and increased tumor infiltration were potential mechanisms of immune enhancement in vivo in TIL from tumors treated with the A2AR antagonist ZM 241385 together with anti-TIM3 mAb. To determine the direct roles of A2AR in cytoskeletal polarization and CTL effector function, we investigated CL4 CTL function in vitro (Fig. 1). Migratory T cells extend a leading lamella and form a uropod at the posterior end. CL4 CTL treatment with the A2AR agonist CGS-21680 at 1 µM reduced the percentage of CL4 T cells with a uropod from 80 ± 4% in control-treated CL4 CTL to 25 ± 5% (p < 0.001) (Fig. 7a), indicative of suppression of the migratory phenotype. These data are consistent with the suppression of CL4 CTL spheroid infiltration upon treatment with CGS-21680 (Fig. 6c). Formation of a tight cell couple of a CTL with a tumor cell is the first step of killing and requires the effective extension of lamellae towards the target cell as a cytoskeletal polarization step. Upon treatment with CGS-21680 the frequency of CL4 CTL forming a tight cell couple upon contact with RencaHA target cells was significantly (p < 0.01) reduced from 49 ± 6% upon control treatment to 32 ± 7% (Fig. 7b). In CTL tumor cell couples, T cell translocation over the tumor target cell surface and off-interface lamellae are defining cytoskeletal features of suppressed TIL. ARTICLE ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Fig. 5 A2AR plus TIM3 suppress CTL polarization, killing, and infiltration in the TME. a–e Ex vivo cytoskeletal polarization of CL4 TIL from RencaHA tumor-bearing BALB/c mice upon ATT of CL4 T cells and treatment with combinations of A2AR antagonist and anti-TIM3 mAb (N = 5 control, N = 3 both treatments, N = 2 A2AR antagonist alone) in comparison to in vitro CL4 CTL is given. Mouse numbers across the different parts of the experiments are detailed in Supplementary Fig. 2a. a Representative image sequence in 20 s steps of a CL4 CTL with off-interface lamellae as labeled with black arrows. Time 0:00 is arbitrary. Scale bar = 5 µm. Entire image sequence in Supplementary Movie 1 with a second time series in Supplementary Movie 2. b Time until the formation of the first off-interface lamella is given. Kaplan–Meier survival analysis (Log Rank) N > 30 cell couples per condition over four experiments. c Representative image sequence in 1 min steps of a CL4 CTL with a translocation, i.e. CTL movement of >1 interface diameter from the initial location of the immune synapse (red line). Time 0:00 is the time of tight cell coupling. Scale bar =5 µm. Entire image sequence in Supplementary Movie 3 with a second time series in Supplementary Movie 4. d The frequency of cell couples with translocation is given ± SEM. 1-way ANOVA. N = 21–132 cell couples per condition over ≥2 experiments. Alternate analysis of pooled data of percent translocation by proportion’s z-test yields p < 0.0001 for all comparisons between CTL/TIL and treated TIL samples. e Growth curves of the tumors used for analyses a–d are shown. f RencaHA tumor-bearing BALB/c mice were treated with A2AR antagonist and anti-TIM3 mAb from day 12. ATT of CL4 T cells was given on day 12. The killing of KdHA-pulsed Renca mCherry tumor cells by day 16 ex vivo CL4 TIL is given at an E:T ratio of 3:2. Each point = 1 tumor, N = 2 experiments. Size-matched tumors analyzed on the same day are paired for comparison using a t-test. g Growth of the tumors used for killing analysis in f are shown as two separate experiments. h, i Half of the size- matched tumors from mice in e and g were stained. h A representative image with CD8 staining in red and Thy1.1 staining in green. ARTICLE scale bar = 50 µm. i The numbers of (left panel) endogenous Thy1.2+CD8+ TIL and adoptively transferred Thy1.1+ Clone 4 TIL or (right panel) total CD8+ TIL and FOXP3+ regulatory T cells in ten peripheral and ten central tumor areas are given. N = 2 control tumors and three treated tumors analyzed over two experiments. Size-matched tumors fixed on the same day are paired for analysis using a t-test. Source data are provided in Supplementary Data 4. co-cultures with the A2AR agonist CGS-21680 at 1 µM36 (Fig. 6c–e). Such treatment led to a significant (p < 0.05) reduction of CL4 CTL infiltration into the spheroids to about half of the level of infiltration seen with the vehicle only control (Fig. 6c, e), consistent with previously described enhancement of CTL infil- tration into tumors upon A2AR antagonist treatment24 and in A2AR-deficient mice22. In CGS-21680 treated spheroids, Renca cell death was drastically diminished reaching only 16% of control at the 12 h time point (p < 0.005) (Fig. 6d, e). As the effect of CGS- 21680 on killing is substantially greater than the effect on infil- tration, reduced spheroid infiltration can only partially account for reduced tumor cell death upon treatment with the A2AR agonist. Therefore, A2AR likely also impairs the execution of tumor cell killing. In combination, the spheroid data establish that A2AR and TIM3 directly suppress the ability of CL4 T cells to kill tumor target cells with an additional inhibitory effect of A2AR in reducing CTL infiltration. 36 ± 9% and 29 ± 4%, respectively (p < 0.001) (Fig. 7c). This enhancement was reversed by parallel treatment with ZM 241385 at 1.25 µM. NECA and ZM 241385 at the concentrations used engage both A2AR and A2BR35. However, as A2AR mRNA expression in T cells is several-fold higher than that of A2BR and A2AR-deficient lymphocytes don’t elevate cAMP in response to adenosine any more20, the induction of CL4 T cell translocation and the reversion thereof are most likely mediated by A2AR. Similarly, off-interface lamellae became more frequent upon CL4 CTL treatment with NECA and formed more rapidly, as both partially reversed by parallel treatment with ZM 241385 (Fig. 7d). Together these data establish that engagement of A2AR on CTL suppresses cytoskeletal polarization at multiple stages of CTL function, migration, cell couple formation and the maintenance of a fully polarized cell couple. COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 To determine whether A2AR and ectly regulate the interaction of suppressed CTL with ll l d h i i i not diminish spheroid infiltration by CL4 CTL (Fig. ever, it diminished the ability of CL4 CTL to kill Renca inside the spheroids as determined with DRAQ7 (Fi 6b) C fi i TIM3 d d di i i h a c b d e g f h i 0:00 0:20 0:40 1:00 1:20 1:40 a c b e 0:00 0:20 0:40 1:00 1:20 1:40 c a 0:00 0:20 0:40 1:00 1:20 1:40 c b e 1:00 1:20 1:40 e b e g g f g f d h i f d g h i i i A2AR and TIM3 directly inhibit the killing of tumor target cells by CL4 CTL in spheroids. To determine whether A2AR and TIM3 directly regulate the interaction of suppressed CTL with their tumor target cells, we employed the in vitro reconstruction of CL4 CTL suppression in our Renca spheroid/CL4 CTL only system (Fig. 1). To determine the roles of TIM3, we overexpressed a TIM3-GFP fusion protein in CL4 CTL. Such overexpression did not diminish spheroid infiltration by CL4 CTL (Fig. 6a). How- ever, it diminished the ability of CL4 CTL to kill Renca target cells inside the spheroids as determined with DRAQ7 staining (Fig. 6b). Confirming TIM3-dependence, diminished Renca tumor cell killing could be reversed with the anti-TIM3 blocking mAb RMT3-23 (Fig. 6b). To determine the roles of A2AR in tumor cell killing by CTL, we treated CL4 CTL/Renca spheroid COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 ARTICLE a b 4 6 8 10 12 Ftractin vs TIM3 <0.005 <0.001 TIM3 vs TIM3 + anti-TIM3 mab 0.01 <0.001 <0.001 Ftractin vs TIM3 + anti-TIM3 mab 0.005 a b 4 6 8 10 12 Ftractin vs TIM3 <0.005 <0.001 TIM3 vs TIM3 + anti-TIM3 mab 0.01 <0.001 <0.001 Ftractin vs TIM3 + anti-TIM3 mab 0.005 b a Discussion To build a diverse tool kit of reagents for comprehensive cancer immunotherapy, it is vital we understand mechanisms of action of mediators of immune suppression. Using a matched in vivo, ex vivo, and in vitro spheroid approach, we have established that A2AR and TIM3 directly suppress the ability of CTL to kill tumor target cells. However, such establishment of a direct effect does not rule out the existence of additional in effects by hich A2AR and TIM3 blockade could enhance immunity. For example, TIM3 is expressed on regulatory in the tumor microenvironment across many tumor m including Renca37. Blocking TIM3 diminishes the supp function of such regulatory T cells and thus promotes tumor immunity37. Our data consistently link defects in c d 4 6 8 10 12 Ftractin vs TIM3 <0.005 <0.001 TIM3 vs TIM3 + anti-TIM3 mab 0.01 <0.001 <0.001 Ftractin vs TIM3 + anti-TIM3 mab 0.005 4 6 8 10 12 control vs CGS-21680 0.02 <0.005 2 4 6 8 10 12 control vs CGS-21680 0.01 0.02 0.02 <0.005 e RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL + CGS-21680 10 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio c 2 4 6 8 10 12 control vs CGS-21680 0.01 0.02 0.02 <0.005 d 4 6 8 10 12 control vs CGS-21680 0.02 <0.005 d c control vs CGS-21680 e RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL e RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL + CGS-21680 RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL + CGS-21680 RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL + CGS-21680 RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL RencaHA tdTomato spheroid with F-tracin-GFP CL4 CTL effect does not rule out the existence of additional indirect effects by hich A2AR and TIM3 blockade could enhance tumor immunity. For example, TIM3 is expressed on regulatory T cells in the tumor microenvironment across many tumor models, including Renca37. Blocking TIM3 diminishes the suppressive function of such regulatory T cells and thus promotes anti- tumor immunity37. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Our data consistently link defects in CTL ARTICLE Treatment of CL4 CTL with 1 µM or 10 µM of the pan-adenosine receptor agonist NECA enhanced the percentage of CL4 CTL that translocated over the tumor target cell surface from 4 ± 2% to Cytoskeletal polarization also contributes to CTL signaling and effector function other than migration and killing. We therefore investigated CTL calcium signaling and naïve T cell proliferation. The elevation of the cytoplasmic calcium concentration in CL4 CTL upon interaction with KdHA peptide pulsed Renca tumor target cells was partially inhibited by treatment with 1 µM CGS- 21680 (Fig. 7e). Proliferation of naïve CL4 T cells upon stimulation with anti-CD3/CD28 was partially inhibited by 1 µM or 20 µM NECA, as reversed with parallel treatment with the A2AR antagonist ZM 241385 at 1.25 µM without reaching statistical significance (Fig. 7f). An only moderate effect of A2AR on T cell proliferation has been previously reported19. A determination of whether these defects are secondary to impaired cytoskeletal polarization or independent thereof is beyond the scope of this manuscript. Such defects, albeit moderate in size, may contribute to the immune-suppressive function of A2AR. MMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 9 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 ARTICLE In altered immunosuppressed and altered- excluded tumors cancer-specific CTL priming and infiltration do occur but tumor-mediated immune suppression, rather than relying predominantly on inhibitory receptors, employs alternate sup- pressors such as adenosine and prostaglandin E2, Tregs, and inhi- bitory cytokines such as IL-10 and TGF-β13. Moreover, infiltration of CTL into tumors can often be partial, reaching only the per- ipheral stromal regions of the tumor mass. Therapeutic approaches to increase tumor infiltration by CTL are therefore important in extending immunotherapy to cold and altered phenotype cancers. CTL tumor infiltration is enhanced in A2AR-deficient mice, mice with selective A2AaR deletion in T cells and upon A2AR agonist treatment, albeit in experiments using hot mouse tumor models22–24. In various mouse models, CD73 activity on non- hematopoietic cells limited tumor infiltration of T cells54. Increased tumor infiltration of CD8+ CTL upon A2AR blockade may occur because A2AR regulates the endothelium55. In addition, CTL- intrinsic mechanisms of enhanced tumor infiltration are likely. We showed that A2AR engagement could efficiently block CL4 CTL infiltration of spheroids (Fig. 6c). A2AR engagement directly sup- presses CD8+ T cell migration through inhibition of the KCa3.1 ion channel56. Adenosine may also regulate the infiltration of other in immune cell types, as blockade of CD73 leads to increased dendritic p Nevertheless, the focus on a direct effect of checkpoint block- ade regimens on CTL responses is important as a complement to current inhibitory receptor blockade therapies. CTLA-4 and PD-1 blockade improve the anti-tumor immune response amongst patients with melanoma, NSCLC, and hematological cancers13,42, however, frequently with substantial adverse immunological effects. PD-1 and CTLA-4 are expressed during T cell differ- entiation and by CTL throughout the body. Moreover, they are expressed by other cell types, such as myeloid cells and regulatory T cells, respectively. Action on myeloid cell types and the gen- eration of new T cell clones at priming, potentially including autoreactive ones, maybe a principal mechanism of PD-1 and CTLA-4 blockade with only secondary effects on CTL killing43,44: In basal and squamous cell carcinoma patients, anti-PD-1 does not lead to the activation of existing anti-tumor T cell clones but to tumor enrichment of new ones6. In a mouse melanoma model deletion of PD-1 in T cells does not enhance anti-tumor immu- nity; however, deletion of PD-1 in myeloid cells does5. ARTICLE The engagement of a TCR by its physiological cognate MHC/ peptide ligand is critical for the investigation of cytoskeletal regulation38. To allow such TCR engagement, the experiments here were conducted in a murine system. Previous work on adenosine and TIM3 suggests that findings are likely to be directly applicable in humans. For example, the preclinical efficacy of A2AR antagonists which are now licensed for control of Parkinson’s disease was initially established in mice39,40. Elevated expression of TIM3 on Th1 cells is observed in both multiple sclerosis and its established mouse model of experi- mental autoimmune encephalitis and is required for the sup- pression of autoimmunity41. Moreover, the blocking anti-TIM3 antibody used here targets the same phosphatidylserine- binding site of TIM3 as an antibody currently in clinical trial41. However, while human anti-TIM3 antibodies pursued therapeutically are largely Fc receptor-silent27, the rat IgG2a subclass of the anti-TIM3 antibody RMT3-23 used here does effectively engage Fcγ receptors and can thus trigger corre- sponding effector functions. Thus, these caveats need to be considered when translating our findings into therapeutic development. Despite the promise of targeting TIM3 and AAR in early clinical trials, it is still unclear whether or not blocking A2AR and/ or TIM3 will lead to fewer autoimmune side effects. Adenosine, A2AR and TIM3 not only suppress T cell function but also that of myeloid cells49,50. However, effects of adenosine in myeloid cells may be mediated by another adenosine receptor, A2BR51. A2AR expression in T cells also contributes to thymic development and in the maintenance of a quiescent state among naïve T cells52. Autoimmunity upon melanoma rejection in A2AR-deficient mice has been observed19. Nevertheless, approval of the A2AR antagonist Istradefylline for the treatment of Parkinson’s Disease53 and several early phase clinical trials of the A2AR antagonist CPI-444 in cancer indicate that autoimmune side effects of A2AR blockade can be minimal. CTLA-4 and PD-1 have the greatest efficacy in tumors that possess large numbers of infiltrated CD8+ TIL, which are pre- dominantly suppressed by inhibitory receptor expression13. How- ever, such ‘hot’ tumors represent only a minority of all cancer types, prominently melanomas. In contrast, cold tumors lack an immune infiltrate almost entirely. ARTICLE ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Fig. 6 A2AR and TIM3 suppress infiltration and killing of tumor spheroids by CTL. a, b CTL retrovirally transduced to express TIM3-GFP or F-tractin-GFP as control were cocultured with RencaHA tdTomato spheroids incubated with KdHA peptide for 12 h ± 10 µg/ml anti-TIM3 mAb (clone RMT3-23) with images acquired every 2 h. Each data point is an independent experiment (N = 11) with five or six spheroids analyzed per independent experiment. a SIL densities are shown with the mean ± SEM. b Spheroid death, as measured by the increase in DRAQ7+ spheroid volume, is shown for the same experiments as in a. c, d CL4 CTL transduced to express F-tractin-GFP were cocultured with RencaHA tdTomato spheroids ±1 µM CGS-21680. Each data point is an independent experiment (N = 3) with three spheroids analyzed per independent experiment. c CL4 T cell densities are shown as mean ± SEM. d Spheroid death, as measured by the increase in DRAQ7+ spheroid volume, is shown for the same experiments as in c. All data were analyzed by 2-Way ANOVA, matched by independent repeat and time point. e Representative images of RencaHA tdTomato spheroids (red) with F-tractin-GFP-expressing CL4 CTL (green) as stained for cell death with DRAQ7 (blue) ± 1 µM CGS-21680 as indicated. scale bar = 100 µm with the same scale for both images. Entire imaging data are available as detailed in the data availability statement. Source data are provided in Supplementary Data 5. relapsed/refractory solid tumors (Eli Lilly) and Sabatolimab (MGB453) in combination with anti-PD-1 in advanced solid tumors (Novartis)46,47. Currently, there are at least four A2AR antagonists which are in Phase II trials, NIR-178 (Novartis) with anti-PD-1 in multiple solid tumors and diffuse large B-cell lym- phoma, PBF-509 (Novartis) in non-small cell lung carcinoma with anti-PD-1, NCT02754141 (Astra Zeneca) with anti-PD-L1 and anti-CD73 in prostate cancer and an A2A/A2B antagonist AB928 (Arcus Biosciences) with chemotherapy in pancreatic cancer48. Our work may provide an incentive to include the investigation of CTL polarization as an integral part of such trials. cytoskeletal polarization to diminished killing. However, while diminished killing is a plausible explanation for the in vivo effects of TIM3 and A2AR, only by direct in vivo manipulation of cytoskeletal polarization, in future experiments, one can prove that such impaired polarization limits tumor immunity. COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio Discussion To build a diverse tool kit of reagents for comprehensive cancer immunotherapy, it is vital we understand mechanisms of action of mediators of immune suppression. Using a matched in vivo, ex vivo, and in vitro spheroid approach, we have established that A2AR and TIM3 directly suppress the ability of CTL to kill tumor target cells. However, such establishment of a direct COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 10 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 c, d Imaging of the interaction between in vitro CL4 CTL with KdHA-pulsed Renca A ±1 25 μM A2aR antagonist ZM 241385 c Percentage of cell couples with translocation (1-way ANOVA) ±SEM N = 28- b a buffer only CGS-21680 T T T T T T T T T T T T T T b a c d d f c f e f e Fig. 7 A2AR suppresses the cytoskeletal polarization of CTL. a Percentage of in vitro CL4 CTL with a uropod ± 1 µM CGS-21680 ± SEM. N = 4 independent experiments, 220/648 T cells analyzed. Representative images of CL4 T cells (labeled with ‘T’) in a field with Renca APC treated ± 1 µM CGS-21680. Arrows indicate uropods. Scale bar = 5 µm. b Frequency of CL4 T cells that form a tight cell couple upon contact with a Renca APC incubated with 2 µg/ml KdHA peptide ± SEM. N = 2 independent experiments, 68/234 T cells analyzed. c, d Imaging of the interaction between in vitro CL4 CTL with KdHA-pulsed Renca tumor cell targets treated with NECA ±1.25 μM A2aR antagonist ZM 241385. c Percentage of cell couples with translocation (1-way ANOVA) ±SEM. N = 28- 132 cell couples per condition over ≥2 experiments. Alternate analysis of pooled data by proportion’s z-test yields p < 0.001 for all comparisons between NECA only-treated and control or ZM 241385-treated samples. d Time until the formation of first off-interface lamella (Kaplan–Meier survival analysis (Log Rank)). P < 0.01 all comparisons. e In vitro CL4 CTL interacted with RencaHA cells incubated with 2 µg/ml KdHA peptide ± 1 µM CGS-21680. The ratio of Fura-2 emissions at 510 nm upon excitation at 340 nm over 380 nm is given relative to time of tight cell coupling as the mean ± SEM. N = 2 independent experiments, 13/42 T cells analyzed. f CL4 T cells were primed in vitro using anti-CD3/CD28 mAb. NECA ± 1.25 µM ZM 241385 were added at 0 h and 3H-thymidine for the last 8 h of cell culture. Proliferation was quantified by 3H-thymidine incorporation (cpm) and is given as the mean ± SEM (N = 3 experiments). Source data are provided in Supplementary Data 6 (all but the calcium data) and Supplementary Data 7 (calcium data). cell infiltration in the context of radiotherapy of poorly immuno- genic tumors50. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Representative images of CL4 T cells (labeled with ‘T’) in a field with Renca APC treated ± 1 µM CGS-21680. A ndicate uropods. Scale bar = 5 µm. b Frequency of CL4 T cells that form a tight cell couple upon contact with a Renca APC incubated with 2 µg/ml K peptide ± SEM. N = 2 independent experiments, 68/234 T cells analyzed. c, d Imaging of the interaction between in vitro CL4 CTL with KdHA-pulsed umor cell targets treated with NECA ±1.25 μM A2aR antagonist ZM 241385. c Percentage of cell couples with translocation (1-way ANOVA) ±SEM. N 32 cell couples per condition over ≥2 experiments. Alternate analysis of pooled data by proportion’s z-test yields p < 0.001 for all comparisons between N only-treated and control or ZM 241385-treated samples. d Time until the formation of first off-interface lamella (Kaplan–Meier survival analysis (Log R P < 0.01 all comparisons. e In vitro CL4 CTL interacted with RencaHA cells incubated with 2 µg/ml KdHA peptide ± 1 µM CGS-21680. The ratio of Fur emissions at 510 nm upon excitation at 340 nm over 380 nm is given relative to time of tight cell coupling as the mean ± SEM. N = 2 independent experim 3/42 T cells analyzed. f CL4 T cells were primed in vitro using anti-CD3/CD28 mAb. NECA ± 1.25 µM ZM 241385 were added at 0 h and 3H-thymidine f ast 8 h of cell culture Proliferation was quantified by 3H thymidine incorporation (cpm) and is given as the mean ± SEM (N 3 experiments) Source da b d f buffer only CGS-21680 T T T T T T T T T T T T T T keletal polarization of CTL. a Percentage of in vitro CL4 CTL with a uropod ± 1 µM CGS-21680 ± SEM. N = 4 independent zed. Representative images of CL4 T cells (labeled with ‘T’) in a field with Renca APC treated ± 1 µM CGS-21680. Arrows b Frequency of CL4 T cells that form a tight cell couple upon contact with a Renca APC incubated with 2 µg/ml KdHA experiments, 68/234 T cells analyzed. ARTICLE We showed that blocking PD-1 in the in vitro interaction between CTL and tumor cells actually impaired, rather than improved, killing and the necessary cytoskeletal polarization steps7. The direct role of A2AR and TIM3 in regulating CTL—tumor cell interaction thus generates a promising contrast to PD-1 and CTLA-4. Accordingly, A2AR antagonists and anti-TIM3 are already explored in early-stage clinical trials, often in combina- tion with anti-PD-127,45. Anti-TIM3 mAb which has recently completed Phase I trials include LY3321367 in advanced COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 11 ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 a b c d e f buffer only CGS-21680 T T T T T T T T T T T T T T Fig. 7 A2AR suppresses the cytoskeletal polarization of CTL. a Percentage of in vitro CL4 CTL with a uropod ± 1 µM CGS-21680 ± SEM. N = 4 independe experiments, 220/648 T cells analyzed. Representative images of CL4 T cells (labeled with ‘T’) in a field with Renca APC treated ± 1 µM CGS-21680. Arro indicate uropods. Scale bar = 5 µm. b Frequency of CL4 T cells that form a tight cell couple upon contact with a Renca APC incubated with 2 µg/ml KdH peptide ± SEM. N = 2 independent experiments, 68/234 T cells analyzed. c, d Imaging of the interaction between in vitro CL4 CTL with KdHA-pulsed Ren tumor cell targets treated with NECA ±1.25 μM A2aR antagonist ZM 241385. c Percentage of cell couples with translocation (1-way ANOVA) ±SEM. N = 2 132 cell couples per condition over ≥2 experiments. Alternate analysis of pooled data by proportion’s z-test yields p < 0.001 for all comparisons between NEC only-treated and control or ZM 241385-treated samples. d Time until the formation of first off-interface lamella (Kaplan–Meier survival analysis (Log Rank P < 0.01 all comparisons. e In vitro CL4 CTL interacted with RencaHA cells incubated with 2 µg/ml KdHA peptide ± 1 µM CGS-21680. The ratio of Fura-2 emissions at 510 nm upon excitation at 340 nm over 380 nm is given relative to time of tight cell coupling as the mean ± SEM. N = 2 independent experimen 13/42 T cells analyzed. f CL4 T cells were primed in vitro using anti-CD3/CD28 mAb. NECA ± 1.25 µM ZM 241385 were added at 0 h and 3H-thymidine for t last 8 h of cell culture. Proliferation was quantified by 3H-thymidine incorporation (cpm) and is given as the mean ± SEM (N = 3 experiments). Source data a provided in Supplementary Data 6 (all but the calcium data) and Supplementary Data 7 (calcium data). a b c d e f buffer only CGS-21680 T T T T T T T T T T T T T T Fig. 7 A2AR suppresses the cytoskeletal polarization of CTL. a Percentage of in vitro CL4 CTL with a uropod ± 1 µM CGS-21680 ± SEM. N = 4 indepe experiments, 220/648 T cells analyzed. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 CD8β no azide (for in vivo depletion) 53-5.8 BioXcell InVivoMAb 100 μg/ mouse RRID:AB_2687706 Thy1.1 no azide (for in vivo depletion) 19E12 BioXcell InVivoMAb 250 μg/ mouse RRID:AB_2687700 CD3ε no azide (for in vitro priming) 145-2C11 BioXcell InVivoMAb 10 μg/ml RRID:AB_1107634 CD3ε no azide (for in vitro priming) 145-2C11 BioXcell InVivoMAb 10 μg/ml RRID:AB_1107634 CD28 no azide (for in vitro priming) 37.51 BioXcell InVivoMAb 1 μg/ml RRID:AB_1107624 CD28 no azide (for in vitro priming) 37.51 BioXcell InVivoMAb 1 μg/ml RRID:AB_1107624 Rabbit H + L AF488 Life Technologies 1:1000 RRID:AB_14316 g Rabbit H + L AF405 Life Technologies 1:1000 RRID:AB_221605 Rat IgG2a,κ BioLegend 1:500 RRID:AB_326523 FOXP3 no azide FJK-16S ThermoFisher 1:100 RRID:AB_4675 FOXP3 APC FJK-16S ThermoFisher 1:40 RRID:AB_469457 Thy1.1 FITC OX-7 BD Bioscience 1:100 RRID:AB_395588 g y D73 BV605 TY/11.8 BioLegend 1:100 RRID:AB_2561528 Cell culture. Murine Renal Carcinoma cell line (RRID:CVCL_2174) and Phoenix retrovirus-producing cell line (RRID:CVCL_H717) were maintained as previously described7. To generate in vitro CL4 CTL, CL4 mouse spleens from 6-12-week-old male or female mice were macerated. Red blood cells were lysed using ACK Lysis buffer (Gibco, ThermoFisher, Gloucester UK), and the remaining splenocytes were resuspended in complete medium, RPMI-1640 with 10% FBS and 50 µM 2-mercaptoethanol. 5 × 106 cells were seeded into each flat bottomed 24 well tissue culture plate with 1 μg/ml of KdHA peptide (IYSTVASSL[518-526]) from influenza virus A/PR/8/H1N1, for 24 h at 37 °C. After 24 h, cells were washed five times in RPMI (Gibco) and reseeded into 24 well plates at 5 × 106 cells per well in 2 ml complete medium containing 50 units/ml of recombinant human IL-2 (National Institutes of Health/NCI BRB Preclinical Repository). Retroviral transduction was performed if required as previously described7. CL4 T cells were then passaged every 12–24 h using fresh IL-2 containing complete medium. Where indicated, 1 or 10 µM NECA (Sigma), 1.25 µM ZM 241385 (Santa Cruz), or 1 µM CGS-21680 (Tocris) were added to cell culture. DMSO was used as vehicle control. ZM 241385 properties, including selectivity for adenosine receptors, are detailed at https:// www.abcam.com/zm-241385-a2a-antagonist-ab120218.html. p p In summary, our work supports blocking of A2AR and TIM3 as an attractive complement to PD-1 and CTLA-4 blockade in anti- tumor immunotherapy. A2AR and TIM3 blockade directly enhanced the ability of CTL to polarize towards and kill tumor target cells in tumors and tumor spheroids and may thus reac- tivate tumor-resident suppressed CTL. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 LAG3 PeCy7 C9B7W eBioscience 1:200 discontinued PD1 BV785 29 F.1A12 BioLegend 1:200 RRID:AB_2563680 TCRβ AF647 H57-597 BioLegend 1:200 RRID:AB_493346 Thy1.1 FITC OX-7 BD Bioscience 1:100 RRID:AB_395588 Thy1.1 PerCP-Cy5.5 OX-7 BioLegend 1:100 RRID:AB_961438 CEACAM1 APC CC1 BioLegend 1:100 RRID:AB_2632612 For blocking and T cell priming TIM3 no azide (for in vitro/in vivo blockade) RMT3-23 BioXcell In Vivo mAb in vivo: 100 μg/mouse in vitro: 10 μg/ml RRID:AB_10949464 Isotype control for anti-TIM3 Rat IgG2a 2A3 no azide (for in vivo/in vitro blockade) BioXcell In Vivo mAb in vivo: 100 μg/mouse in vitro: 10 μg/ml RRID:AB_1107769 CD8β no azide (for in vivo depletion) 53-5.8 BioXcell InVivoMAb 100 μg/ mouse RRID:AB_2687706 Thy1.1 no azide (for in vivo depletion) 19E12 BioXcell InVivoMAb 250 μg/ mouse RRID:AB_2687700 CD3ε no azide (for in vitro priming) 145-2C11 BioXcell InVivoMAb 10 μg/ml RRID:AB_1107634 CD28 no azide (for in vitro priming) 37.51 BioXcell InVivoMAb 1 μg/ml RRID:AB_1107624 For immunohistochemistry: FcBlock no azide (for blockade of Fc receptors) 2.4G2 BD Biosciences 1:50 RRID:AB_2870673 CD8α no azide 53-6.7 BioLegend 1:500 RRID:AB_312741 Rabbit H + L AF488 Life Technologies 1:1000 RRID:AB_143165 Rabbit H + L AF405 Life Technologies 1:1000 RRID:AB_221605 Rat IgG2a,κ BioLegend 1:500 RRID:AB_326523 Rat IgG H + L AF594 ThermoFisher 1:2000 RRID:AB_141374 FOXP3 no azide FJK-16S ThermoFisher 1:100 RRID:AB_467575 FOXP3 APC FJK-16S ThermoFisher 1:40 RRID:AB_469457 Thy1.1 FITC OX-7 BD Bioscience 1:100 RRID:AB_395588 Isotype control for Thy1.1 Mouse IgG1,κ FITC BD Bioscience 1:100 RRID:AB_395505 CD19 (dump) BV510 6D5 BioLegend 1:100 RRID:AB_2562136 TCRβ SB645 H57-597 ThermoFisher 1:200 RRID:AB_2723704 CD4 PE-Cy5.5 RM4-5 ThermoFisher 1:3000 RRID:AB_1121830 CD8β PE-Cy5 H35-17.2 ThermoFisher 1:3000 RRID:AB_657770 CD25 VioBright-FITC 7D4 Miltenyi 1:200 RRID:AB_2784091 CD73 BV605 TY/11.8 BioLegend 1:100 RRID:AB_2561528 CD39 PerCP-eFluor710 24DMS1 ThermoFisher 1:100 RRID:AB_10717953 LAG3 PeCy7 C9B7W eBioscience 1:200 discontinued PD1 BV785 29 F.1A12 BioLegend 1:200 RRID:AB_2563680 TCRβ AF647 H57-597 BioLegend 1:200 RRID:AB_493346 Thy1.1 FITC OX-7 BD Bioscience 1:100 RRID:AB_395588 Thy1.1 PerCP-Cy5.5 OX-7 BioLegend 1:100 RRID:AB_961438 CEACAM1 APC CC1 BioLegend 1:100 RRID:AB_2632612 For blocking and T cell priming TIM3 no azide (for in vitro/in vivo blockade) RMT3-23 BioXcell In Vivo mAb in vivo: 100 μg/mouse in vitro: 10 μg/ml RRID:AB_10949464 Isotype control for anti-TIM3 Rat IgG2a 2A3 no azide (for in vivo/in vitro blockade) BioXcell In Vivo mAb in vivo: 100 μg/mouse in vitro: 10 μg/ml RRID:AB_1107769 CD8β no azide (for in vivo depletion) 53-5 8 BioXcell InVivoMAb 100 μg/ on T cells21. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 In addition, regulation of tumor and spheroid infiltration by A2AR promises therapeutic potential in cold and altered immunity tumors. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 In a model of colon cancer, A2AR blockade does not alter PD-1 expression on CD8+ TIL but reduced it on T cells in the tumor-draining lymph nodes21. Effects of A2AR blockade on inhibitory receptor expression thus may be context dependent. y p p y p A key mechanism of A2AR and TIM3 in regulating CTL function is the suppression of cytoskeletal polarization in T cell migration and target cell killing. We can only speculate on underlying signaling mechanisms. In principle, two scenarios are conceivable. A2AR and/or TIM3 could trigger signaling pathways that directly regulate cytoskeletal dynamics. Alternatively, these receptors could modulate general proximal T cell signaling that is known to control cytoskeletal dynamics. Consistent with direct cytoskeletal regulation, A2AR signaling through cAMP/protein kinase A results in inhibition of RhoA and Cdc42 in leukocytes during cell-cell adhesion59. In cardiomyocytes, adenosine receptor agonists prevent RhoA activation and cofilin-mediated actin polymerization60. Alternatively, A2AR binds α-actinin61. Such binding could lead to the sequestration of α-actinin whose recruitment to the T cell/APC interface is required for effective T cell polarization62. Consistent with modulation of general prox- imal T cell signaling, A2AR and TIM3 could converge on the tyrosine kinase Lck. Elevated cAMP levels in response to A2AR engagement can enhance Csk activity15,63, leading to inhibitory phosphorylation of Lck. When not engaged by ligand, TIM3 binds BAT3, a molecule that maintains a reservoir of Lck at the immune synapse and thus lowers the threshold for TCR signaling. TIM3 binding to Galectin-9 or CEACAM-1 releases BAT3, disabling Lck pre-localization at the immunological synapse64. Also consistent with TIM3-mediated regulation of general proximal T cell sig- naling, Y256 and Y263 of the TIM3 cytoplasmic domain are phosphorylated in response to T cell activation, can associated with the Src family kinase Fyn and the p85 subunit of phospha- tidylinositol 3-kinase and lead to elevated tyrosine phosphoryla- tion of phospholipase C γ165. Phospholipase C γ1-dependent generation of diacylglycerol is a key regulator of multiple steps in cytoskeletal polarization66. While we have consistently related A2AR and TIM3 engagement to impaired cytoskeletal polarization here, future work will be required to establish the signaling mechanisms that underpin this relationship. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 between different elements of tumor-mediated immune suppres- sion has been described before, e.g. in the upregulation of A2AR expression upon PD-1 blockade58. Curiously, blocking A2AR dur- ing vaccination leads to diminished inhibitory receptor expression g Blockade of A2AR led to compensatory upregulation of inhibi- tory receptor expression as previously noted15,57. Compensation COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio 12 ARTICLE Flow cytometry staining with its principal component analysis. MACS-purified TIL was resuspended in PBS at a concentration of 1 × 106 cells/ml. Flow cytometric data were analyzed using FlowJo™(Treestar) software. Gating was performed using fluorescence minus one (FMO) samples for each antibody stain. In the principal component analysis of inhibitory receptor expression upon mouse treatment with ZM 241385 all combinations of % positive were used as input data as listed in the source file for Fig. 2. A custom script to execute the analysis is available at GitHub: https://github.com/ge8793/ rencaPCA. g For Microscope-based Cytotoxicity Assays, the IncuCyte™Live Cell analysis system and IncuCyte™ZOOM software (Essen Bioscience) were used to quantify target cell death. 1 × 106 Renca cells transfected to express the fluorescent protein mCherry were either untreated (control) or pulsed with 2 μg/ml KdHA peptide for 1 h. Cells were centrifuged and resuspended in a 3.33 ml Fluorobrite complete medium (ThermoFisher) to a concentration of 15,000 cells/50 μl. Cells were plated in each well of a 384 well PerkinElmer plastic-bottomed view plate and incubated for 4 h to adhere. CL4 T cells were FACS sorted, and 15,000 cells were added to the plate in 50 μl Fluorobrite medium 4 h after target cells were plated, yielding a 1:1 effector to target ratio. Images were taken every 15 min for 14 h at 1600ms exposure using a 10x lens. The total red object (mCherry target cell) area (µm2/ well) was quantified at each time point. The T cell killing rate was determined as the linear gradient of the red object data at its steepest part between the time at which Control Clone 4 CTL started killing until they had eradicated the Renca cell monolayer. The T cell killing rate was normalized to the growth of Renca (control) cells which were not pulsed with cognate HA antigen. Immunohistochemistry. Tumors were harvested and cut in half. Half of the tumor was used for CTL function assays. The other half was placed in 2.35 ml RPMI on ice. Within 1 h of harvest, tumors were snap-frozen in OCT compound (Tissue Tek) on a square of cork in an isopentane bath, hovering above Liquid Nitrogen. Tumors were sectioned into 5 μm sections and mounted on slides. On day one of staining, acetone was cooled to −20 °C. Slides were allowed to air dry for 10–20 min before being fixed in acetone for 10 min on ice. Slides were dried again then washed three times in PBS. Flow cytometry staining with its principal component analysis. MACS-purified TIL was resuspended in PBS at a concentration of 1 × 106 cells/ml. Using MetaMorph (Molecular Devices) for analysis of DIC images, tight cell couple formation was defined as the first time point at which a maximally spread immune synapse formed, or two frames after initial cell contact, whichever occurred first. Prior to cell coupling, a T cell was deemed to have a uropod when it displayed a membrane extension that is opposite the leading edge with a region of inverse curvature relative to the entire cell at its base for a duration of at least 1 min. To assess CTL and TIL morphology in cell couples with tumor target cells, every DIC frame after tight cell couple formation was assessed for the presence of off-synapse lamellae, defined as transient membrane protrusions pointing away from the immune synapse, followed by retraction. To determine CTL translocation over the Renca cell surface, the position of the immune synapse on the RencaHA target cell was compared to the position at cell coupling. If the T cell had migrated by a distance greater than the diameter of the immune synapse, this was classed as translocation. For calcium analysis, field-averaged background fluorescence was subtracted from the 340 nm and 380 nm excitation fluorescence data, and the ratio of the Fura-2 images upon excitation at 340 versus 380 nm was determined in a circular region of interest of the dimensions of the T cell. Flow cytometry staining with its principal component analysis. MACS-purified TIL was resuspended in PBS at a concentration of 1 × 106 cells/ml. 2.5 × 105 −1 × 106 cells for each condition resuspended in 100 μl PBS per tube with 1 μl/100 μl Zombie Aqua Fixable Live Cell Detection reagent (BioLegend). Tubes were incubated for 15 min in the dark at room temperature. Cells were washed in 3 ml FACS buffer and resuspended in 100 μl per tube FcBlock (BD Biosciences) for 15 min at 4 °C. Cells were washed in 3 ml FACS buffer, pelleted, and resuspended in 100 μl FACS buffer per tube with antibody at the required concentration (antibody section above) and then incubated for 30 min at 4 °C. Antibody concentration was determined by titration using five concentrations centered around the manufacturer’s recommended protocol. Cells were washed in 3 ml FACS buffer before being fixed in 1% paraformaldehyde and analyzed within 5 days using a Fortessa Flow Cytometer and BD FACSDiva Software (BD Biosciences). COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 intraperitoneally in 100 μl vehicle and 100 μg/mouse anti-TIM3 mAb (RMT3-23, BioXcell InVivoMAb) injected intraperitoneally in 100 μl PBS on alternate days throughout the experiment. Thus, ZM 241385-treated mice did not receive the mouse isotype control antibody. However, earlier work has shown that mouse isotype control antibody does not affect Renca tumor growth in vivo7. Tumors were measured on alternate days using calipers and the volume was calculated using the modified elliptical formula: Volume = 0.5 × length × width2. CL4 CTL restimulation in vivo was achieved by i.p. injection of 200 μl of PBS containing 1200 HA units of influenza virus A/PR/8/H1N1 virus, as in30. Rechallenge with tumor cells was achieved following stable remission (remained < 5 mm diameter for 8 days) by injecting a further 1 × 106 RencaHA cells subcutaneously into the dorsal neck region in PBS. Depletion of CD8+ or Thy1.1+ T cells was performed by injection of depleting mAb (anti-CD8, 53-5.8, BioXcell InVivoMAb, 100 μg/mouse, Thy1.1 19E12 BioXcell InVivoMAb, 250 μg/mouse). Spheroid imaging. Spheroids were grown as described in the preceding paragraph. On day 10, CL4 CTL that had been retrovirally transduced to express the GFP- tagged protein of interest (TIM3-GFP or F-tractin-GFP) were sorted by flow cytometry and incubated in IL-2 medium for 1 h ± 10 µg/ml anti-TIM3 mAb (Clone RMT3-23) or 1 µM CGS-21680 where appropriate. Meanwhile, spheroids were dissociated from Matrigel and resuspended into fresh Matrigel at a con- centration of ~8 spheroids/µl. 50 µl of the spheroid-Matrigel suspension was separated into Eppendorf tubes for each treatment group, followed by the addition of 200,000 sorted T-cells per tube. 50 µl of Matrigel, containing spheroids and T cells, was plated into each well of a 24-well tissue culture plate. After Matrigel had set, 1 ml of Fluorobrite medium was added to each well, containing 1.5 µM DRAQ7 viability dye ± 10 µg/ml anti-TIM3 mAb or 1 µM CGS-21680. Images were acquired every 2 h post-plating CTL with spheroids in 3 µm z steps from the bottom of the spheroid to its widest point, usually 40 steps, for 12 h using a Leica SP8 AOBS confocal microscope with a 10x HC PL Fluotar lens (NA = 0.3). Flow cytometry staining with its principal component analysis. MACS-purified TIL was resuspended in PBS at a concentration of 1 × 106 cells/ml. Slides were dried in the area around the section and a border marked using a hydrophobic pen (ImmEdge). Sections were blocked with 2.5% horse serum (Vector) for 30 min then washed three times in PBS. Sections were incubated with primary antibodies or isotype controls in 1% BSA/ PBS (Sigma-Aldrich) overnight at 4 °C or room temperature for 1 h (antibody section above). On day 2 of staining, slides were washed three times with PBS and incubated with secondary antibody prepared in 1% BSA/PBS for 30–60 min at room temperature (antibody section above). Slides were washed three times in PBS, with the second wash being performed in a shaker for 10 min. Hoechst stain (ThermoFisher) was applied for 10 min, followed by three PBS washes. Slides were fixed in 1% PFA for 10 min then washed twice in PBS, once in Glycine (0.3 M) (Fisher Chemical) for 10 min, and one final wash in PBS. Coverslips were mounted in prolong gold antifade reagent and slides were left to cure at room temperature for 24 h and images were acquired using a mark and find experiment on the same confocal microscope as used for spheroid imaging. Images were analyzed using ImageJ (Fiji). Spheroids. RencaHA tdTomato cells were resuspended at a concentration of 1 × 105 cells/ml, mixed with Matrigel (Corning) at 4 °C, seeded in a 24-well plate at a final concentration of 500 cells per Matrigel dome, and left to solidify for 10 min at 37 °C. 2 ml cell medium was added to each well and cells incubated at 37 °C for 11 days. Each Matrigel dome was washed twice in PBS and incubated for 30 min with 1 ml of Cell Recovery Solution (Corning). Spheroids were collected in a 15-ml Falcon tube and pulsed with KdHA peptide at a final concentration of 2 μg/ml for 1 h. Pulsed spheroids were re-embedded in Matrigel together with 5 × 105 primed CL4 CTL per Matrigel dome. Matrigel domes were dissolved for analysis of spheroid-infiltrating T cells after 16 h: Spheroids were washed twice in PBS and incubated with 1 ml of Cell Recovery Solution (Corning). Spheroids were collected, washed through a 70 μm sieve, and then disaggregated to retrieve T cells in 500 μl of imaging buffer for immediate FACS sorting. Statistics and reproducibility. The Power of in vivo experiments was designed to reach >80%. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 To obtain measurements of SIL density and spheroid dead volumes, raw data were pre-processed and semi-automatically analyzed using a custom-written Cancer Segmentation workflow for the Fiji69 plugin, MIA (v0.9.26) and its MIA_MATLAB (v1.1.1) package, available at GitHub via Zenodo: https://doi.org/10.5281/ zenodo.2656513 and https://doi.org/10.5281/zenodo.4769615, respectively. The corresponding.mia workflow files are available at https://doi.org/10.5281/ zenodo.5511888. Briefly, the imaged stacks were mirrored and concatenated along the z-axis to produce pseudo-complete spheroids. These spheroids were binarised and segmented using connected-components labeling70. To account for frag- mented spheroid segmentation arising from gaps in labeling, in particular towards spheroid centers, spheroids were fit with alpha shapes71 using the MATLAB implementation. Adjacent spheroids which had become merged during processing were separated with a distance-based watershed transform70. T-cells and dead volumes were individually segmented from their respective fluorescence channels using similar threshold and labeling-based processes, albeit without the alpha shape step. Imaging and image analysis. For live-cell imaging of immune synapse formation and CL4 T cell morphology 1 × 106 Renca tumor target cells were pulsed with 2 µg/ ml KdHA for 1 h at 37 °C. Cells were then resuspended at 1 × 106/400 μl Imaging Buffer (PBS, 10% FBS, 1 mM CaCl2, 0.5 mM MgCl2). To image the increase in the cytoplasmic Ca2+ concentration, CL4 CTL were incubated with 2 μM Fura-2 AM (Molecular Probes) for 30 min at room temperature in imaging buffer and washed twice thereafter. 40,000 Clone 4 CTL or TIL in 5 μl imaging buffer were plated with 1–1.5 μl Renca target cells (preceding paragraph) in 50 μl imaging buffer, in a 384-well, glass-bottomed imaging plate (Brooks). If reagents such as NECA were included in cell culture, they were also added to imaging buffer at an equivalent final assay concentration. Every 10 s for 15 min, one bright-field differential interference contrast (DIC) image, one fluorescence image with excitation at 340 nm, and one fluorescence image with excitation at 380 nm were acquired at 37 °C with a 40x oil objective (NA = 1.25) on a Leica DM IRBE-based wide-field system equipped with Sutter DG5 illumination and a Photometrics Coolsnap HQ2 camera. Materials and methods For 3H-thymidine proliferation assays67, Clone 4 T cells were primed using anti-CD3/CD28 mAb stimulation or with mature agonist-peptide pulsed dendritic cells in a flat bottomed 96 well plate and cultured for the desired time at 37 °C. 3H-thymidine (Amersham Life Science, London, UK) was added for the final 8 h of cell culture at 1.45 mBq/ml. To harvest, the entire plate was frozen at −20 °C for at least 24 h and subsequently defrosted to produce cell lysis. 3H-thymidine incorporation was measured using a 96 well Tomtec harvester and a Microbeta scintillation counter (PerkinElmer). Mice. Thy1.2+/+ BALB/c, (Charles River, Oxford, UK) and Thy1.1+/+ CL4 TCR transgenic mice [Research Resource Identifier (RRID): IMSR_JAX:005307] were maintained at the University of Bristol Animal Services Unit. All mouse experi- ments were compliant with UK Home Office Guidelines under PPL 30/3024 to DJM as reviewed by the University of Bristol AWERB (Animal welfare and ethical review body) committee. Antibodies. Antibodies used are described in the order: antigen, fluorescent label, clone, supplier, dilution, RRID: For flow cytometry: FcBlock no azide (for blockade of Fc receptors) 2.4G2 BD Biosciences 1:50 RRID:AB_2870673 CD8α FITC 53-6.7 BD Bioscience 1:100 RRID:AB_394569 CD8β PeCy7 YTS156.7.7 BioLegend 1:200 RRID:AB_2562777 CD4 AF700 CK1.5 BioLegend 1:100 RRID:AB_493698 CD39 PerCP-Cy5.5 24DMS1 eBioscience 1:100 discontinued CD73 BV605 TY/11.8 BioLegend 1:100 RRID:AB_2561528 TIM3 PE B8.2C12 BioLegend 1:100 RRID:AB_1626177 TIM3 BV605 RMT3-23 BioLegend 1:100 RRID:AB_2616907 TIGIT APC 1G9 BioLegend 1:100 RRID:AB_10962572 Extraction of T cells from tumor tissue was carried out using magnetic-activated cell sorting (Miltenyi) and flow cytometry7. Tumor growth and treatment experiments. Six-week-old Thy1.2+/+ BALB/c mice were injected subcutaneously, in the dorsal neck region, with 1 × 106 RencaHA tumor cells in 100 μl PBS. Tumor measurements and treatment com- menced at day 12, when tumors of ~5 × 5 mm diameter were palpable. For adoptive transfer experiments, tumor-bearing mice were injected i.v. at day 12, with 5 × 106 day 5 CL4 CTL (see above). For in vivo immunotherapy, control mice received 100 μl vehicle (15% vol/vol DMSO, 15% vol/vol Cremophore EL, 70% vol/vol PBS) ± 100 μg/mouse isotype control (Rat IgG2a, 2A3, BioXcell InVivoMAb)68. Treated mice received combinations of 10 mg/kg ZM 241385 injected 13 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio ARTICLE References 1. Hegde, P. S. & Chen, D. S. Top 10 challenges in cancer immunotherapy. Immunity 52, 17–35 (2020). In analyses of in vivo tumor growth and survival, the following factors were considered: 2. Schildberg, F. A., Klein, S. R., Freeman, G. J. & Sharpe, A. H. Coinhibitory pathways in the B7-CD28 ligand-receptor family. Immunity 44, 955–972 (2016). 1. Experiments using Single Agent treatment of RencaHA tumors: when single immunotherapy was administered, tumor growth was unidirectional and tumors did not shrink; therefore, repeated measures ANOVA was utilized to compare growth curves. Kaplan–Meier analysis was used to compare survival (Mantel Cox, Log rank), since there were only two outcomes in the study, survival or death. Mice were censored if tumors were < maximal allowable tumor size (MATS) or if culled for reasons other than tumor size (such as ulceration). Mice bearing tumors > MATS were culled and recorded as dead. 3. Anderson, A. C., Joller, N. & Kuchroo, V. K. Lag-3, Tim-3, and TIGIT: co- inhibitory receptors with specialized functions in immune regulation. Immunity 44, 989–1004 (2016). 4. Wolchok, J. D. et al. Nivolumab plus ipilimumab in advanced melanoma. N. Engl. J. Med. 369, 122–133 (2013). 5. Strauss L., et al. Targeted deletion of PD-1 in myeloid cells induces antitumor immunity. Sci. Immunol. 5, eaay1863 (2020). 6. Yost, K. E. et al. Clonal replacement of tumor-specific T cells following PD-1 blockade. Nat. Med. 25, 1251–1259 (2019). 2. Experiments using combined treatment with Adoptive T cell transfer, TIM3 blockade, and A2aR blockade Cohorts of 14 mice per group were injected to achieve a minimum 4–6 tumors per group of uniform size (3–5 mm diameter) between 12–14 days after injection, for each experimental replicate. Tumor growth was compared using R-values. To account for growth over the whole triphasic growth curve, final volume/initial volume is used because an exponential model cannot be applied to tumor growth > 1 week72–74. For early-stage tumors, an exponential model was fitted. R-value (units of R = 1/time) was calculated using: R = c(dc/dt) where: qg = 2.76 × 105 Renca tumor cell = 17–25 μM diameter in vitro = 3.61 nm3 volume using modified elliptical formula. Therefore 2.76 × 105 Renca cells make up 1 mm3 of tumor. References Each Renca cell divides three times every 24 h, dt = 8 h, dc = difference in cell number = (qg × final volume in mm3) −(qg × starting volume in mm3), c = number of cells at start = (qg × starting volume in mm3)72–74. Progression-free survival was calculated using Cox’s regression with covariates (SPSS). Hazard ratio of relapse was calculated using SPSS statistics. 7. Ambler, R. et al. PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and target tumor cells within the tumor. Sci. Signal 13, eaau4518 (2020). 8. Sharma, A. et al. Anti-CTLA-4 immunotherapy does not deplete FOXP3(+) regulatory T cells (Tregs) in human cancers. Clin. Cancer Res. 25, 1233–1238 (2019). 9. Sharma, A. et al. Anti-CTLA-4 immunotherapy does not deplete FOXP3(+) regulatory T cells (Tregs) in human cancers-response. Clin. Cancer Res. 25, 3469–3470 (2019). 10. Ferrara, R., Susini, S. & Marabelle, A. Anti-CTLA-4 immunotherapy does not deplete FOXP3(+) regulatory T cells (Tregs) in human cancers-letter. Clin. Cancer Res. 25, 3468 (2019). 11. Stone, E. L. et al. Lack of blocking activity in anti-CTLA-4 antibodies reduces toxicity, but not anti-tumor efficacy. bioRxiv https://doi.org/10.1101/ 2021.07.12.452090, (2021). 12. Dahan, R. et al. FcgammaRs modulate the anti-tumor activity of antibodies targeting the PD-1/PD-L1 axis. Cancer cell 28, 285–295 (2015). Analysis of flow cytometric data: flow cytometric data were analyzed using FlowJo™(Treestar). Gating was performed using Fluorescence Minus One control samples. Boolean gating tool was used to determine all possible combinations of expression of certain markers. Percentage expression of co- inhibitory receptors as determined by flow cytometry were arcsine square root transformed prior to analysis. Tumor volume was log10 transformed. Principal component analysis (PCA) was performed using RStudio™to analyze the combination expression of six markers as determined by flow cytometry, and tumor volume. Tumors with a growth rate >1 standard deviation from the mean were excluded from comparisons. After transformation, each value (x) within the expression data and volume data were standardized (x*) to give a mean (m) of zero and a standard deviation (SD) of one using the formula x* = (x −m)/sd. PCA was then performed using RStudio and the packages ‘FactoMineR’ and ‘Factoextra’. Principal components (PC) 1–5 were selected for inclusion based on eigenvalues >1. Cos2 values were used to confirm the quality of representation of each variable within 2-dimensional factor maps and were calculated as the square of the variable’s co-ordinates. COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 Received: 9 June 2021; Accepted: 9 December 2021; Received: 9 June 2021; Accepted: 9 December 2021; (standardized difference2)) x cp,power, where n = sample size per group determined using the formula, d = standardized difference = measurable difference in tumor volume / standard deviation, cp,power = constant for p < 0.01 and power at 80% defined using standard Altman’s Nomogram = 11.7. (standardized difference2)) x cp,power, where n = sample size per group determined using the formula, d = standardized difference = measurable difference in tumor volume / standard deviation, cp,power = constant for p < 0.01 and power at 80% defined using standard Altman’s Nomogram = 11.7. Samples were compared using independent sample t-tests for two-sample comparisons. To determine the effect of one or more independent variables on one dependent variable across >2 groups, One-way and Two-way ANOVA were used. Where proportions were compared, Fisher’s exact Boschloo or a proportion’s z-test was used. SPSS statistics and Prism were used to execute analyses. Data availability 22. Young, A. et al. Co-inhibition of CD73 and A2AR adenosine signaling improves anti-tumor immune responses. Cancer cell 30, 391–403 (2016). Two large data sets, the flow cytometry data underpinning the principal component analysis to determine inhibitory receptor expression upon A2aR blockade in Fig. 2 and the spheroid imaging data in Fig. 6 are accessible through an open data repository of the University of Bristol at https://doi.org/10.5523/bris.11ocsor59owa32ihsxmf0qzj3s. All other source data are provided as Supplementary Data 1 through 7 and corresponding raw imaging data will be made available upon request. 23. Cekic, C. & Linden, J. Adenosine A2A receptors intrinsically regulate CD8+ T cells in the tumor microenvironment. Cancer Res. 74, 7239–7249 (2014). 24. Willingham, S. B. et al. A2AR Antagonism with CPI-444 induces antitumor responses and augments efficacy to Anti-PD-(L)1 and Anti-CTLA-4 in preclinical models. Cancer Immunol. Res. 6, 1136–1149 (2018). 25. Avery, L., Filderman, J., Szymczak-Workman, A. L. & Kane, L. P. Tim-3 co- stimulation promotes short-lived effector T cells, restricts memory precursors, and is dispensable for T cell exhaustion. Proc. Natl Acad. Sci. USA 115, 2455–2460 (2018). References The contribution of variables to PCs 1–4 was calculated using the formula (var.cos2 * 100) / (total cos2 PC) to produce P-values. 13. Galon, J. & Bruni, D. Approaches to treat immune hot, altered and cold tumours with combination immunotherapies. Nat. Rev. Drug Discov. 18, 197–218 (2019). 14. Vigano, S. et al. Targeting adenosine in cancer immunotherapy to enhance T-cell function. Front. Immunol. 10, 925 (2019). 15. Cekic, C. & Linden, J. Purinergic regulation of the immune system. Nat. Rev. Immunol. 16, 177–192 (2016). 16. Zelenay, S. et al. Cyclooxygenase-dependent tumor growth through evasion of immunity. Cell 162, 1257–1270 (2015). 17. Boison, D. & Yegutkin, G. G. Adenosine metabolism: emerging concepts for cancer therapy. Cancer cell 36, 582–596 (2019). py 18. Beavis, P. A., Stagg, J., Darcy, P. K. & Smyth, M. J. CD73: a potent suppressor of antitumor immune responses. Trends Immunol. 33, 231–237 (2012). 19. Ohta, A. et al. A2A adenosine receptor protects tumors from antitumor T cells. Proc. Natl Acad. Sci. USA 103, 13132–13137 (2006). 20. Lukashev, D. E. et al. Analysis of A2a receptor-deficient mice reveals no significant compensatory increases in the expression of A2b, A1, and A3 adenosine receptors in lymphoid organs. Biochem. Pharm. 65, 2081–2090 (2003 21. Leone, R. D. et al. Inhibition of the adenosine A2a receptor modulates expression of T cell coinhibitory receptors and improves effector function for enhanced checkpoint blockade and ACT in murine cancer models. Cancer Immunol. Immunother. 67, 1271–1284 (2018). Reporting summary. Further information on research design is available in the Nature Research Reporting Summary linked to this article. Flow cytometry staining with its principal component analysis. MACS-purified TIL was resuspended in PBS at a concentration of 1 × 106 cells/ml. Experimental group size was determined using the equation: n = (2/ 14 COMMUNICATIONS BIOLOGY | (2022) 5:9 | https://doi.org/10.1038/s42003-021-02972-8 | www.nature.com/commsbio ARTICLE ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-021-02972-8 28. de Mingo Pulido, A. et al. TIM-3 regulates CD103(+) dendritic cell function and response to chemotherapy in breast cancer. Cancer cell 33, 60–74 e66 (2018). 57. Leone, R. D. & Emens, L. A. Targeting adenosine for cancer immunotherapy. J. Immunother. Cancer 6, 57 (2018). 58. Beavis, P. A. et al. Adenosine receptor 2A blockade increases the efficacy of anti-PD-1 through enhanced antitumor T-cell responses. Cancer Immunol. Res. 3, 506–517 (2015). 29. Ferris, R. L., Lu, B. & Kane, L. P. Too much of a good thing? Tim-3 and TCR signaling in T cell exhaustion. J. Immunol. 193, 1525–1530 (2014). 59. Laudanna, C., Campbell, J. J. & Butcher, E. C. Elevation of intracellular cAMP inhibits RhoA activation and integrin-dependent leukocyte adhesion induced by chemoattractants. J. Biol. Chem. 272, 24141–24144 (1997). 30. Janicki, C. N., Jenkinson, S. R., Williams, N. A. & Morgan, D. J. Loss of CTL function among high-avidity tumor-specific CD8+ T cells following tumor infiltration. Cancer Res. 68, 2993–3000 (2008). 31. Jenkinson, S. R., Williams, N. A. & Morgan, D. J. The role of intercellular adhesion molecule-1/LFA-1 interactions in the generation of tumor-specific CD8+ T cell responses. J. Immunol. 174, 3401–3407 (2005). 60. Zeidan, A., Gan, X. T., Thomas, A. & Karmazyn, M. Prevention of RhoA activation and cofilin-mediated actin polymerization mediates the antihypertrophic effect of adenosine receptor agonists in angiotensin II- and endothelin-1-treated cardiomyocytes. Mol. Cell. Biochem. 385, 239–248 (2014). p 32. Keddie, J. R., Poucher, S. M., Shaw, G. R., Brooks, R. & Collis, M. G. In vivo characterisation of ZM 241385, a selective adenosine A2A receptor antagonist. Eur. J. Pharm. 301, 107–113 (1996). 61. Burgueno, J. et al. The adenosine A2A receptor interacts with the actin- binding protein alpha-actinin. J. Biol. Chem. 278, 37545–37552 (2003). 33. Poucher, S. M. et al. The in vitro pharmacology of ZM 241385, a potent, non- xanthine A2a selective adenosine receptor antagonist. Br. J. Pharmacol. 115, 1096–1102 (1995). 62. Gordon-Alonso, M. et al. EWI-2 association with alpha-actinin regulates T cell immune synapses and HIV viral infection. J. Immunol. 189, 689–700 (2012). 34. Al Shoyaib, A., Rahman Archie, S. & Karamyan, V. T. Intraperitoneal route of drug administration: should it be used in experimental animal studies? Pharm. Res. 37, 12 (2020). 63. Tasken, K. & Ruppelt, A. Negative regulation of T-cell receptor activation by the cAMP-PKA-Csk signalling pathway in T-cell lipid rafts. Front Biosci. 11, 2929–2939 (2006). ARTICLE 35. Li, Q. et al. ZM241385, DPCPX, MRS1706 are inverse agonists with different relative intrinsic efficacies on constitutively active mutants of the human adenosine A2B receptor. J. Pharm. Exp. Ther. 320, 637–645 (2007). 64. Rangachari, M. et al. Bat3 promotes T cell responses and autoimmunity by repressing Tim-3-mediated cell death and exhaustion. Nat. Med. 18, 1394–1400 (2012). 36. Phillis, J. W. The selective adenosine A2 receptor agonist, CGS 21680, is a potent depressant of cerebral cortical neuronal activity. Brain Res. 509, 328–330 (1990). 65. Lee, J. et al. Phosphotyrosine-dependent coupling of Tim-3 to T-cell receptor signaling pathways. Mol. Cell Biol. 31, 3963–3974 (2011). 37. Sakuishi, K. et al. TIM3(+)FOXP3(+) regulatory T cells are tissue-specific promoters of T-cell dysfunction in cancer. Oncoimmunology 2, e23849 (2013). 66. Quann, E. J., Liu, X., Altan-Bonnet, G. & Huse, M. A cascade of protein kinase C isozymes promotes cytoskeletal polarization in T cells. Nat. Immunol. 12, 647–654 (2011). 38. Wülfing C., Roybal K. T. in Encyclopedia of Cell Biology (eds Bradshaw, R. A. & Stahl, P.) 677–686 (Academic Press, 2016). 67. Basingab, F. S., Ahmadi, M. & Morgan, D. J. IFNgamma-dependent interactions between ICAM-1 and LFA-1 counteract prostaglandin E2- mediated inhibition of antitumor CTL responses. Cancer Immunol. Res. 4, 400–411 (2016). 39. Zhang J., Yan W., Duan W., Wuthrich K., Cheng J. Tumor immunotherapy using A2A adenosine receptor antagonists. Pharmaceuticals (Basel) 13, 237 (2020). 40. Kondo, T. & Mizuno, Y. A long-term study of istradefylline safety and efficacy in patients with Parkinson disease. Clin. Neuropharmacol. 38, 41–46 (2015). 68. Chan, E. S. L. et al. Adenosine A(2A) receptors play a role in the pathogenesis of hepatic cirrhosis. Br. J. Pharmacol. 148, 1144–1155 (2006). 69. Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012). 41. Wolf, Y., Anderson, A. C. & Kuchroo, V. K. TIM3 comes of age as an inhibitory receptor. Nat. Rev. Immunol. 20, 173–185 (2020). 42. Hodi, F. S. et al. Nivolumab plus ipilimumab or nivolumab alone versus ipilimumab alone in advanced melanoma (CheckMate 067): 4-year outcomes of a multicentre, randomised, phase 3 trial. Lancet Oncol. 19, 1480–1492 (2018). 70. Legland, D., Arganda-Carreras, I. & Andrey, P. MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ. Bioinformatics 32, 3532–3534 (2016). 71. Edelsbrunner, H., Kirkpatrick, D. G. & Seidel, R. On the shape of a set of points in the plane. Ieee T Inf. ARTICLE Theory 29, 551–559 (1983). 43. Murakami, N. & Riella, L. V. Co-inhibitory pathways and their importance in immune regulation. Transplantation 98, 3–14 (2014). 72. Enderling, H., Chaplain, M. A., Anderson, A. R. & Vaidya, J. S. A mathematical model of breast cancer development, local treatment and recurrence. J. Theor. Biol. 246, 245–259 (2007). 44. Buchbinder, E. I. & Desai, A. CTLA-4 and PD-1 pathways: similarities, differences, and implications of their inhibition. Am. J. Clin. Oncol. 39, 98–106 (2016). 73. Enderling, H. & Chaplain, M. A. Mathematical modeling of tumor growth and treatment. Curr. Pharm. Des. 20, 4934–4940 (2014). 73. Enderling, H. & Chaplain, M. A. Mathematical modeling of tumor growth and treatment. Curr. Pharm. Des. 20, 4934–4940 (2014). 45. Zeidan A. M., Komrokji R. S., Brunner A. M. TIM-3 pathway dysregulation and targeting in cancer. Expert Rev. Anticancer Ther. 21, 523–534 (2021). 45. Zeidan A. M., Komrokji R. S., Brunner A. M. TIM-3 pathway dysregulation and targeting in cancer. Expert Rev. Anticancer Ther. 21, 523–534 (2021). 46. Curigliano, G. et al. Phase I/Ib clinical trial of Sabatolimab, an anti-TIM-3 antibody, alone and in combination with Spartalizumab, an anti-PD-1 antibody, in advanced solid tumors. Clin. Cancer Res. 27, 3620–3629 (2021). 74. Loizides, C. et al. Model-based tumor growth dynamics and therapy response in a mouse model of De Novo carcinogenesis. PLoS One 10, e0143840 (2015). 46. Curigliano, G. et al. Phase I/Ib clinical trial of Sabatolimab, an anti-TIM-3 antibody, alone and in combination with Spartalizumab, an anti-PD-1 antibody, in advanced solid tumors. Clin. Cancer Res. 27, 3620–3629 (2021). Acknowledgements 47. Harding, J. J. et al. Blocking TIM-3 in treatment-refractory advanced solid tumors: a phase Ia/b study of LY3321367 with or without an anti-PD-L1 antibody. Clin. Cancer Res. 27, 2168–2178 (2021). We acknowledge the University of Bristol Flow Cytometry Facility with Andrew Herman and Lorena Sueiro-Ballesteros and the Wolfson BioImaging Facility with Katie Jepson for experimental support, Alan Hedges for statistical advice, and Mick Bailey for contribu- tions to the principal component analysis. This work was supported by grants from the Wellcome Trust via the University of Bristol Elizabeth Blackwell Institute (Wellcome Trust ISSF2 grant 105612/Z/14/Z to G.L.E.), the Wellcome Trust (201254/Z/16/Z/ to G.L.E., 102387/Z/13/Z/ to R.A.) and the University of Bristol Cancer Research Fund (to C.W.). G.L.E was also supported as an associate of the Wellcome Trust GW4-CAT scheme. C.C.W.W. was supported by the MRC GW4 DTP. E.J.M. was supported by a Wellcome Trust GW4-CAT Fellowship. For the purpose of Open Access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. y 48. Willingham, S. B., Hotson, A. N. & Miller, R. A. Targeting the A2AR in cancer; early lessons from the clinic. Curr. Opin. Pharm. 53, 126–133 (2020). 49. Cekic, C., Day, Y. J., Sag, D. & Linden, J. Myeloid expression of adenosine A2A receptor suppresses T and NK cell responses in the solid tumor microenvironment. Cancer Res. 74, 7250–7259 (2014). microenvironment. Cancer Res. 74, 7250–7259 (2014). 50. Wennerberg, E. et al. CD73 blockade promotes dendritic cell infiltration of irradiated tumors and tumor rejection. Cancer Immunol. Res. 8, 465–478 (2020). 51. Cekic, C. et al. Adenosine A2B receptor blockade slows growth of bladder and breast tumors. J. Immunol. 188, 198–205 (2012). 52. Cekic, C., Sag, D., Day, Y. J. & Linden, J. Extracellular adenosine regulates naive T cell development and peripheral maintenance. J. Exp. Med. 210, 2693–2706 (2013). Author contributions 53. Jenner, P. An overview of adenosine A2A receptor antagonists in Parkinson’s disease. Int Rev. Neurobiol. 119, 71–86 (2014). G.L.E. designed and carried out experiments, analyzed data, and wrote the paper. C.C.W.W. designed and carried out experiments and analyzed data. R.A. designed and carried out experiments and analyzed data. E.J.M. designed and carried out experiments and analyzed data. H.A. designed and carried out experiments and analyzed data. S.J.C. designed methods for image analysis, G.G. carried out experiments and analyzed data. C.W. designed and carried out experiments, analyzed data, and wrote the paper. D.J.M. designed and carried out experiments, analyzed data, and wrote the paper. 54. Wang, L. et al. CD73 has distinct roles in nonhematopoietic and hematopoietic cells to promote tumor growth in mice. J. Clin. Invest 121, 2371–2382 (2011). 55. Sands, W. A. & Palmer, T. M. Adenosine receptors and the control of endothelial cell function in inflammatory disease. Immunol. Lett. 101, 1–11 (2005). 56. Chimote A. A., et al. A defect in KCa3.1 channel activity limits the ability of CD8(+) T cells from cancer patients to infiltrate an adenosine-rich microenvironment. Sci. Signal 11, eaaq1616 (2018). Code availability A custom-written script to execute the principal component analysis of inhibitory receptor expression is available at GitHub: https://github.com/ge8793/rencaPCA. A custom-written Cancer Segmentation workflow for spheroid analysis for the Fiji plugin, MIA (v0.9.26) and its MIA_MATLAB (v1.1.1) package, is available at GitHub via Zenodo: https://doi.org/10.5281/zenodo.2656513 and https://doi.org/10.5281/ zenodo.4769615, respectively. The corresponding.mia workflow files are available at https://doi.org/10.5281/zenodo.5511888. 26. Zang, K. et al. TIM-3 as a prognostic marker and a potential immunotherapy target in human malignant tumors: a meta-analysis and bioinformatics validation. Front Oncol. 11, 579351 (2021). 27. Acharya N., Sabatos-Peyton C., Anderson A. C. Tim-3 finds its place in the cancer immunotherapy landscape. J. Immunother. 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The Relation between Uranium and Radium. - IV
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The Relation between Uranium and Radium. - IV This content has been downloaded from IOPscience. Please scroll down to see the full text. 1909 Proc. Phys. Soc. London 22 42 (http://iopscience.iop.org/1478-7814/22/1/304) View the table of contents for this issue, or go to the journal homepage for more Download details: Please note that terms and conditions apply. 42 MR. F. SODDY ON THE * I. Phil. Mag. June 1905, p. 768; 11. (in conjunction with T. D. Mackenzie, B.Sc.), ibid. Aug. 1907, p. 272; 111. ibid. Oct. 1908, p. 634, A preliminary account of some of the results in this paper appeared in a letter to ‘Nature,’ May 13th 1909, p. 308, and the Physikalkche Zeitachrif, 1909, p. 396. The paper was read on Oct. 22nd, 1900, befnre the Physical Society of London, under the title “The Production of Radium from Uraniam.” * I. Phil. Mag. June 1905, p. 768; 11. (in conjunction with T. D. Mackenzie, B.Sc.), ibid. Aug. 1907, p. 272; 111. ibid. Oct. 1908, p. 634, A preliminary account of some of the results in this paper appeared in a letter to ‘Nature,’ May 13th 1909, p. 308, and the Physikalkche Zeitachrif, 1909, p. 396. The paper was read on Oct. 22nd, 1900, befnre the Physical Society of London, under the title “The Production of Radium from Uraniam.” 111. The Relation between Uranium and Radium.-IV. * By FREDERICK SODDY, M A . 111. The Relation between Uranium and Radium.-IV. * By FREDERICK SODDY, M A . THE measurements of the amount of radium in the uranium solutions purified and prepared by Mi.. T. .D. Mackenzie have now been in progress for nearly four years, and during the past year have all begun to yield certain evideiice of the growth of radium. It may be recalled that the quantity of radium in the oldest preparation, which con- tained 255 grams of uranium, remained almost constant within the error of measurement for the first two years, while in the next year a very sligbt increase was noticed. It was deduced from this result that the period of average life of the intermediate parent of radium (ionium) must not be less than 16,500 years, on the assumption that, neglecting uranium X, it was the only intermediate body in the dis- integration series. During the fourth year, now nearly passed, the measurements have been taken to a higher degree of accuracy than formerly, various improvements having been effected, and these have established that the production of rldium within this period has been going on at a rate proportional to the square of the time, within the error of measurement. As the methods employed are the outcome of considerable exporience, and as the details are of im- portance in securing accuracy, it may be useful to give a short account of them as they are now carried out, though they do not involve anything new in general principle. Throughout the term “ unit leak ” will be used to denote a leak of 1 division a minute in the electroscope, and the term “ unit of radium ” the quantity 10-l2 gram. One division of the eyepiece-scale of. the microscope equals -023 mm. A preliminary account of some of the results in this paper appeared in a letter to ‘Nature,’ May 13th 1909, p. 308, and the Physikalkche Zeitachrif, 1909, p. 396. The paper was read on Oct. 22nd, 1900, befnre the Physical Society of London, under the title “The Production of Radium from Uraniam.” RELATION BETWEEN URANIUM AND RADIUM. 43 2. Method of Testing for Radium. The uranium preparations at the commencement of the fourth year were removed from the mercury-pump, to which they had previously been connected, and transferred to large flasks, as shown at A, fig. 1. Fig. 1. Fig. 1. I n the new method of testing the principle is the same as was first employed by Boltwood. After each measurement the flask A is sealed at B and C, after being exhausted through C, and is left for at least a month for the equilibrium amount of emanation to accumulate. The apparatus as shown in fig. 1 does not need detailed description. Before the measurement it is exhausted through D, and then water in the flask E is admitted through F, by opening the clamp. This is repeated several times to remove any emanation in the water. The flask A is heated gradually by steam on the water-bath for a short time before the seal is broken to avoid percussive boiling. Violent irregular boiling is necessary thoroughly to agitate the liquid and to remove the emanation. If the flask is immersed in warm water boiling tends to be confined to the upper layer, and the extraction of emanation is imperfect. The seals of the flask are broken under thick rubber tubing, a little fresh air being allowed to enter occa- sionally as required through the thermometer-tube K. After MR. F. SODDY ON TEE 44 half an hour of vigorous boiling, the clamp C is closed and F opened, admitting water until all but a small definite volume of G is filled. H is then disconnected, and some air thus allowed to enter, removing nitric oxide if present. The tube F is then connected to G at H, and the arrangement is ready for the transference of the emanation into the electroscope. The latter is shown in fig. 2. It consists of a glass globe A of about half a litre capacity, provided with a circular plane parallel plate W to serve as a window, and silvered Pig. 2. Pig. 2. internally except opposite the window. The window greatly improves the sharpness of the image in the microscope, and the accuracy of the readings. C, D are circles of nliiminium- foil to act as baffle-plates, which are pasted over the inside at the inlet and outlet taps B and G. 2. Method of Testing for Radium. The fine thermometer- tube E also assists in moderating the disturbance of the leaf by the entering air. The electroscope is kept exhausted nnd charged when not in use during any series of successive measuremente. Its normal natural leak has been constant within 10 per cent. at 1.1 units since it nas constructed. This is first determined accnrntely. Several sinall quantities of air are admitted and pumped out, before finally filling the instrument with air. The natural leak is then taken over several hours, prior to the admission of the emanation. When this has been done the instrument is exhausted and the calcium-chloride tube K connected to the tube D of fig. 1. When the whole of the gas in G has been drawn in, D is disconnected and fresh air allowed to enter to :ttmo- RELATION BETWEEN URANIUM AND RADIUM. 45 spheric pressure. No trace of emanation is thus lost. The leak is taken over the period from 8 to 16 minutes after the admission of the emanation, and again after the lapse of three hours. The leaf is kept continuously charged (negn- tively) with the charging-rod earthed over the whole interval. This is important, as otherwise a considerable error is intro- duced, which does not appear to have been previously pointed out, The error just referred to applies particularly to the calibration of the electroscope. With the minute .quantities of radium present in the uranium solutions, the leaf if fully charged initially remains charged over the three-hour interval, and the practice throughout since, this method of measurement was adopted has been to keep it charged during the whole interval. With the radium standards, however, the charge has to be renewed every few minutes. At first this was not done, and the active deposit, instead of being concentrated on the leaf system in the most favourable position to produce ionization, is distributed over the surface of the globe. The leak under these circumstances after the three-hour interval is from ten to twenty per cent, too low, and rises gradually wilh successive measurements for a further period of three hours. 3. Calibration of the Electroscope. The two standards used in previous work had been made by directly weighing 2.9 and 3.5 milligrams of pitchblende of 53 per cent. uranium content, and differed from each other by about ten per cent., due no doubt to the error of weighing directly such small quantities on an ordinary balance. For the present electroscope an entirely new set of six standards were prepared with the utmost care, from a different sample of pitchblende. Three separate quantities weighing 59-45, 133.7, and 58.32 milligrams were separately diesolved in nitric acid which had recently been distilled over barium nitrate to remove any sulphuric acid, and diluted in 100 C.C. graduated flasks. Out of each of the three solutions two standards were made, by taking a known fraction of the liquid, determined by weighing, and sealing it lip after dilution in a flash similar to A (fig. 1) of about 46 MR. F. SODDY ON THE 100 C.C. capacity. These six new standards agree extremely well among themselves. On the remainders of the solutions used in preparing the standards three analyses of uranium were performed, which agreed in showing that the proportion of uranium in the pitchblende used was 49 per cent. The results are shown in Table I. TABLE I. 11. III. IV. V. UEANIIJM. RADIUM. L ~ A K . OONSTANT. (Milli- (x 10-12 gram.) (Divisions (III.+IV.). grams). per minute). I11 .... 1.420 IV .... 1359 --- - - V.... 0305 0.696 6.660 -- 0149 VI ....I 1.510 I 0740 I 251.6 1 44.5 I 5.66 &AN (omitting IV.) ... 578 - TABLE I. 11. III. IV. V. UEANIIJM. RADIUM. L ~ A K . OONSTANT. (Milli- (x 10-12 gram.) (Divisions (III.+IV.). grams). per minute). I11 .... 1.420 IV .... 1359 --- - - V.... 0305 0.696 6.660 -- 0149 VI ....I 1.510 I 0740 I 251.6 1 44.5 I 5.66 &AN (omitting IV.) ... 578 - &AN (omitting IV.) ... 578- &AN (omitting IV.) ... 578 - The factor used to calculate the quantity of radium from the quantity of uranium is 3.4 x lo-', instead of 3.8 x 10-7, as previously used. It will he seen that the standards differ among themselves in content of radium in the ratio of over 40 to 1, but the constant of the instrument as determined by the individual standards does not vary from the main value more than two per cent. 3. Calibration of the Electroscope. It must be mentioned that the value for standards IV. is not comparable with the others. The quantity of radium was too high to permit of the charge on the leaf being maintained as it leaked away, so the leaf was kept permanently connected through the charging-rod to the negative pole of the 250 volts mains. Under these conditions the charging-rod as well as the leaf-system would attract the active deposit, and the part deposited near the cork in the neck of the flask would not contribute its full effect. For this reason the constant, as is to be expected, is too high, and the value has been omitted in calculating the 47 RELATION BETWEEN URANIUM AND RADIUM. mean. The latter is 5.78, that is 5.78 x 10-12 g. of radium produces a leak of 1 division a minute. The two old standards give a mean value of 7.3 for the constant, the leaf not being kept charged during the three-hours interval. This difference is not much, if any, greater than can be accounted for by the effect of keeping the leaf charged. 4. Results. The results are shown in Table 11. for the three uranium preparations described under Experiments I., II., and IV. (11. pp. 285-289 and 290). The later tests in each prepara- TABLE 11. Date. Time (Time)l. Observed Reduction Reduced Radium i(year8)I 1 Leak. 1 Factor, I Leak. ((XIO-12 gram). EXPERIMENT I. 255 grams Uranium purified, 24/10/05. 9/6/08 I 2.62 1 6.86 27 j8 joe 14.80 29/9/09 I I 15.43 420 4.20 24.3 428 I I ::9: I 24.7 416 24.1 EXPERIXENT IV. 278 grams Uranium purified, 14/8 f 06. 7/5/09 2.73 7'45 3.68 ... 3.68 1 21.3 25/6/09 1 2.87 1 8.22 1 3'72 1 ::: 1 3.72 I 21.5 4/10/U9 3.15 9.90 4.00 4.00 231 EXPERIMENT 11. 408 Prams Uranium mrified. 13/12/06. 8/8/08 1.66 2.75 0.70 0.80 19/11/08 I 1.93 I 3.73 6/5/09 2.40 ~ 5.76 1 1.25 15/6/09 I 250 625 ~ 1.26 1/10/09 I 2.80 , 7.83 I 1.37 I x.96 0.67 3'87' x.96 1 0.77 1 4.45 ... ... 1 1-26 ... 1 1.37 , TABLE 11. 1 48 hlR. F. SODDY ON THE tion have been performed with the electroscope in its existing condition, for which the constant has been accurately deter- mined as described. The first tests were done with another leaf-system, which was destroyed after one test owing to nitric oxide having been present in the gases boiled out of the solution. The factor necessary to reduce the readings with this system to the same value as those with the present system was fouad to be 0.96. In the initial test shown both for Experiments I. and II., to which not much weight can be attached, the charging-rod was left after charging close to the system as in all previous measurements, whereas t,he present practice is to turn it as far as possible away, which was found to increase the sensitiveness 1.15 times, The three tests indicated by a * in the last column of the table were done by the mercury-pump before the solutions had been transferred to the sealed flasks they are now kept in. The table shows that in all three preparations the quantity p p q y Fig. 3. of radium has increased with time. The measurements are plotted against the square of the time in fig. 3. It will be seen that all the points lie close to straight lines. The maximum departure is in the case of the last test performed in Experiment I., which lies about 2 units too low. The Fig. 3. Fig. 3. of radium has increased with time. The measurements are plotted against the square of the time in fig. 3. It will be seen that all the points lie close to straight lines. The maximum departure is in the case of the last test performed in Experiment I., which lies about 2 units too low. The RELATION BETTEEN URANIUM AND RADIUM. 49 ordinary error is not more than 1 unit, or gram. Con- sidering the nature of the measurement the agreement is perhaps closer than might have been expected, as it is doubtful if any previous measiiremcnts of these sinall quantities of radium have been made to anything approaching this degree of accuracy. V. Period of tlte Direct Parent of Radium. As detailed in the last communication (111. p. 635) the growth of radium from uranium should proceed according to the same power of the time as there are products in the series (counting radium itself) between the two dements, provided all these products have periods long compared wit,h the time of observation. Rutherford, assuming only one intermediate product-the direct parent of radium -to exist, first showed that the production of radium should proceed according to the forinula R = 112 X&Rot2 or 112 X,X,UtZ, R = 112 X&Rot2 or 112 X,X,UtZ, where R represents the qiiaiitity of radium, U that of nraninni, R, the quantity of radium in radioactive equilibrium with the uranium, XI, X,, X3 the constants of uranium, the direct parent of radium, and radium respectively, and t is the time, This may Le written R = G x 10-*h,t2, where R represents the radium formed per kilogram of uranium and & and t are expressed in yeays. It is of interest to calculate the value of X9 from this equation, although, as will be shown Inter, the calculation is seriously in error if other intermediate bodies of period comparable with the time of observation exist in the series From the curve (fig. 3) representing Experiment I. the growth in 4 years (P= 16) is about 13.3 unite, or 52 units per kilograrp of uranium. The value of ha is therefore 5.4 x and the value of l&, the period of average life, is 18,500 years. The lower value (10,000 years) given in the preliminary communications is solely due to a value having been used €or the constant of the instrument, which is subject to three corrections all operating in the same direction : (1) the effect of keeping the leaf charged, (2) the effect of altering the E VOL. XXII. VOL. XXII. 50 M R . F. SODDY OS THE position of the charging rod, and (3) the alteration in the value of the ratio between U and Ra in pitchblende. p I n Experiment IV. the value depends entirely on tho initial observation to which, as already mentioned, not much weight can be attached. The experiment shows for the first three years a growth of 7-55 units, or 27.5 units per kilogram of uranium. This gives for h2 a value 5.1 x and for ljAz 19,600 years. j y Esperiment 111. V. Period of tlte Direct Parent of Radium. is very interesting on account of the very small total amount of radium present, though the qnnntity of uranium is considerably greater than in the other two. It has not been in progress long enough to give the slope of the curve very accurately. As drawn in fig. 3 the growth in &years is 7.5 units, or 18.4 unih per kilogram. The calculated value of x2 is 3 . 8 ~ and of l/h2 26,000 years. If the growth of radium had been proceeding at the same rate as in Experi- ment T., in $/&years 10.6 uiiits of radium should have been produced, whereas the total amount of radium now present iu less than this, being so far as the measurements indicate only 8.5 units. Even if it is assumed that this difference is due to errors of experiment, it is difficult to believe that the solution as initially prerared contained absolutely no radium. The results of the three experiments taken together thus indicate that the rate of growth of radium in terms of the square of the time is less for the first three years than for the subsequent year. This points to the existence of one or more intermediate bodies of relatively shoi-t period in the series, which would retard the rate of production of radium initially. The experiment is of interest in this way. The actual measurements of the initial quantity of radium in Experiment I. bear this view out, although it must be remembered that the errors of measurement initially were very much greater than now, and this evidence thus only has a doubtful value. For Experiment 11. the initial measurements may Le rejected, as the quantity of radium was almost too smell to be within the range of the older methods. In Experiment IV. no initial measurements were 51 RELlTION BETWEEN URAXIUM AND RADlUM. taken. I n the older tests a brass electroscope bad been used, and this was calibrated at every test with reference to a y-ray radium standard. As was pointed out (11. p. 286) the measurements so correctcd were not nearly so regular as tho actual observations. I n light of recent results on the un- certainty attachinq to y-ray measurements, it is best to reject these calibration tests altogether and to assume that the sensitiveness of the e!ectroscope did not vary. Recalculating from the table (11. p. V. Period of tlte Direct Parent of Radium. 2S2) gives, according to present data, the value 12 for the constant of the instrument. The mean of the first nine tests over the first 309 clays given in the tahle (11. p. 286) recalculated gives the initial quantity of radium as 15.8 units. The initial quantity indicated by the curve on the assumption that the rate of production in terms of the square of the time has been constant from the start, is about 12.5 units. Tbis evidence so far as it goes thus bears out the view that new short-lived intermediate bodies exist. , VI. The Efeects of Short-lived Intermediate Products. VI. The Efeects of Short-lived Intermediate Products. The general effects of short-lived intermediate bodies may now be considered. Let A, B, C, I), E ... and X1, X2, Xt, X,, h, . . , denote the quantities and radioactive constants respectively of a parent element and its successive products. I t is assumed that initially the products are absent, and that the cbange of the parent is so slow that its quantity may be considered constant. The differential equations connecting the terms are If we assume that the periods of the first two products, B and Cy are short and those of the others long the terms in square brackets may be neglected. The case then corresponds to the disintegration series Uranium - Uranium X -. “Uranium A” r-.L Parent of Radium Radium, where B denotes uranium X, for which X, is about 11.4 (year)-’¶ E 2 52 MR. F. SODDY ON THE C . the suspected new intermediate body “ uranium A,” for which the period is probably of the order of unity, D the direct parent of radium, and E radium. p Solving the equations, the growth of radium is given by The last term is always very small, and may be neglected The penultimate term approaches to zero as t After a period several times that of nmnium A at once. increases. it may be neglected. The expression then becomes If inatead of reckoning the time from the start we reckon it fieom a date later by the sum of the periods of average life of the two short-lived bodies, that is, for t in the equation we substitute T, where hen E = 112 )LIX,A f T2+ = 1jZ X1X,AT2 + constant. 1 then That is to say, when the short-lived intermediat>e bodies come into equilibrium the production of radium proceeds strictly according to the square of the time reckoned, not from the start, but from a date later by the sum of the periods of tho intermediate bodies. TO show the effect of the intermediate bodies initially .the graphs of equation (I.) have been plotted against the square of the time, for the following values of h3 :-4, 2, 1, .66, -5, -33, and .25 (fig. 4). The curves therefore show the production of radium according as the hypothetical body uranium A has the period of three months, six months, RELATION BETWEEN URANIUM AND RADIUM. VI. The Efeects of Short-lived Intermediate Products. $3 1, 1.5, 2, 3, and 4 years. The straight line uppermost on the diagram shows the production of radium on the same scale if no short-lived intermediate products intervened. It will be seen at once from these curves that if the portion between the third and fourth years, that is between t2=9 and t2=16, is examined, even for the lowest curve corre- sponding to the four-year period, the curve departs but little from the straight line. I t is doubtful whether the departure would be experimentally detectable over this period. This Fig. 4. shows that the straightness of the experimental cnrve over the period available is no argument against the existence of intermediate b0diei.l. On the other hand, the figure at once reveals the serious error introduced into the calculated period of the parent of radium hy the formula used in Section V. if intermediate bodies exist. The true period of this body is obtained from the slope of the straight line uppermost in the diagram, which represents the rate of production of radium if no intermediate bodies intervened. If an intermediate body with a period of 1 year intervened, the period of the Fig. 4. Fig. 4. shows that the straightness of the experimental cnrve over the period available is no argument against the existence of intermediate b0diei.l. On the other hand, the figure at once reveals the serious error introduced into the calculated period of the parent of radium hy the formula used in Section V. if intermediate bodies exist. The true period of this body is obtained from the slope of the straight line uppermost in the diagram, which represents the rate of production of radium if no intermediate bodies intervened. If an intermediate body with a period of 1 year intervened, the period of the MR. F. SODDY ON THE 34 parent of radium instead of being 18,500 years as calculated in Section V. would really be only 0 72 times this or 13,300 years. If the period of the intermediate body were 4 ye:irs, the true period of the parent of radium would be only 0.32 oE the apparent period, or 6000 years. Yet even a four-year period body might exist without producing in the curve a departure from the straight line enough to be detected experimentally with certaiiitp as far as the measurements have yet gone. VU. New Experiments. Whereas if ail the parent of radium were present initially, the pro- duction of radium would of course proceed proportionally to the time. asmming the same disintegration series as befortb. Whereas if ail the parent of radium were present initially, the pro- duction of radium would of course proceed proportionally to the time. VU. New Experiments. Two new experiments are being commenced which it is hoped will yield in the course of time further evidence on the existence or otherwise of short-lived intermediate bodies in the series. I n the first the purest f'raction of the 50 kilograms of uranyl nitrate which has been repentpdly crystallized from fresh water i n tho work on the 7-rays of uranium (Soddy and Russell, Phil. Map. Oct. 1909, p. 620) has been withdrawn from the fractionation and sealed up in a flask. I t contains 3 kilograms of uranium (element), which is 12 times the quantity in the oldest preparation. It is being tested at monthly intervals for gron th of radium. The initial quantity present has been deterniined in two agreeing consecutive experiments to be 42 units. Considering the mass of the material this is gratifyingly low. I n the course of a year or two the growth of radium from this solution should settle the questiou whether new intermediate products exist in the series. Secondly, now that the rest of the 50 kilograms of uranyl nitrate has been repeatedly purified, it is proposed to seal up one of the preparations of uranium X to be separated from it, as in the work with Mr. Hussell, and to measure from it the rate of production of radium. Unless intermediate bodies exist this would hardly l e worth while, as it would be prnc- tically impossible to clistinguish the parent of radium formed from uranium X-if it is so formed-from that initially sepa- rated with the uranium X. Reetmann (1naug.-Dissert, d. Verf., Berlin, 1909) has stated that uranium X and the parent of radium both have the same chemical proper&@ as RELATION BETWEEN CRANIUM AX'D RADIUM. ' 55 thorium and cannot be separated from this element or from one another. But if an intermediate body exists of period of the order of a year it should be easy lo distinguish between the parent of radium iuitially present with the uranium X and that subsequently produced from it. If U represents the qriaritity of uranium initially in equilibrium with the uranium 3 separated from it, and R represents the qunntity of radium formed from the uianiuin X, it can be shown that asmming the same disintegration series as befortb. VII.1. Conchsions, The measurernents on the growth of radium in the three nrariiuiri solutions purified by Mr. T. I). Mackenzie between three and four years ago, hate shown that in all of them the growth oE radium is proceeding according to the square of the time witliiu the error oE ineasurement. The period of the direct parent of radium calculated from these results, on the assumption that no other intermediate bodies intervene, is 18,500 years in the case of the oldest solution for which the most complete data are available. But in the solution prepared last, the total quantity of radium now present is less than what would have been produced from the radium, assuming the rate of production to have been the sanie as in the first, solution. This suggests the existence of at least one new product " uranium A " intermediate between uranium X and the parent of radium, with the period of the order of one year. From a mathematical investigalion of the effect of such a body ou the grcnvth of radium it is concluded that it would not, if it existed, appreciably alter the production of radium according to the square of the time over the period observations have been made, but it would vitiate the calculations of the period of the average life of the parent of radium according to Rutherford's formula. Tn conclusion, it may be mentioned that R good deal of 56 THE RELATION BETWEEN URANIUM AND RADIUM. additional evidence bearing directly on this question of the existence of new intermediate products has been accumulated in an investigation on the rays and product of uranium X, with which it is couvenient to deal in a separate communi- cration. l?hysicd Chemistry Laboratory, University of Glasgow, October 1909. l?hysicd Chemistry Laboratory, University of Glasgow, October 1909. ABSTRAC The measurements on the growth of radium in the three uranium solutions pniifiod by Mr. T. D. Mackenzie between three and four years ago have shown that in all the growth of radium is proceeding at a rate proportional to the square of the time within the error of measure- ment. The methods of testing hare been improved and the ordinary error is not greater than 10-12 gram of radium. This result indicates the existence of only one long-lived intermediate product in the series between uranium and radium. The period of average life of this body, calculated on the assumption that no other intermediate bodies exist, is 18,600 years in the case of the oldest solution for which data are available over a period from the end of the third to the end of the fourth year from purification. But for the solution prepared last, over a period from the end of the second to the end of the third year, the period indicated is about half again as long as in the first experiment. Indeed, had this solution grown radium at the mme rate, with reference to the square of the time, as the older solution has been doing during the past year, more radium should have been formed than the total amount now actually present. This suggests the exiatcnce of at least one new inter- mediate product in the series ‘( Uranium A ” with a period comparable to the time observations have been in progress. From a mathematical investigation of tha effect of such a body on the rate of growth of radium, it is concluded that it would not, if it existed, appreciably alter the production of radium according to the square of the time over the period accurate observations have been made, even were the period of the new body as great as four years. But its existence would vitiate the calculation of the period of the direct parent of radium according to the simple formula neglecting short-lived products. Other evidence on the problem is contained in the next paper (Ray8 and Product of Uranium X).
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Bihamiltonian Cohomology of KdV Brackets
Communications in mathematical physics/Communications in Mathematical Physics
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Bihamiltonian Cohomology of KdV Brackets General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Contents 1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 805 1.1 Outline of the paper . . . . . . . . . . . . . . . . . . . . . . . . . . . 806 2. Formalism of Functional Polyvector Fields . . . . . . . . . . . . . . . . . 806 2.1 Basic definitions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 807 2.2 Poisson structures . . . . . . . . . . . . . . . . . . . . . . . . . . . . 808 2.3 Poisson structures of the dispersionless KdV . . . . . . . . . . . . . . 808 2.4 Grading and subcomplexes . . . . . . . . . . . . . . . . . . . . . . . 809 3. Spectral Sequences . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 809 4. Bihamiltonian Cohomology . . . . . . . . . . . . . . . . . . . . . . . . . 811 4.1 The main proposition . . . . . . . . . . . . . . . . . . . . . . . . . . 811 4.2 Consequences . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 817 References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 819 Guido Carlet, Hessel Posthuma, Sergey Shadrin Korteweg-de Vries Instituut voor Wiskunde, Universiteit van Amsterdam, Postbus 94248, 1090 GE Amsterdam, The Netherlands. E-mail: g.carlet@uva.nl; h.b.posthuma@uva.nl; s.shadrin@uva.nl Received: 26 June 2014 / Accepted: 20 October 2015 Published online: 2 January 2016 – © The Author(s) 2015. This article is published with open access at Springerlink.com Received: 26 June 2014 / Accepted: 20 October 2015 Published online: 2 January 2016 – © The Author(s) 2015. This article is published with open access at Springerlink.com Springerlink.com Abstract: Using spectral sequences techniques we compute the bihamiltonian coho- mology groups of the pencil of Poisson brackets of dispersionless KdV hierarchy. In particular, this proves a conjecture of Liu and Zhang about the vanishing of such coho- mology groups. Disclaimer/Complaints regulations Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:24 Oct 2024 Digital Object Identifier (DOI) 10.1007/s00220-015-2540-4 Commun. Math. Phys. 341, 805–819 (2016) Communications in Mathematical Physics 1. Introduction A class of important examples of integrable systems comes from the study of the Poisson structures on a formal loop space, that is, on the space of maps from the circle to an n-dimensional ball considered in a formal algebraic way. In this setting one can gener- alize various notions of differential geometry, in particular one can define the space of functional polyvector fields equipped with the Schouten bracket. Introducing a Poisson 806 G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin structure and a system of Hamiltonians in involution one obtains a hierarchy of commut- ing PDEs. The equations of the flows are given by differential polynomials involving the derivatives with respect to the spatial variable. In the case of the so-called bihamiltonian systems, which are characterized by the presence of two compatible Poisson structures, one can construct a set of Hamiltonians in involution with respect two both Poisson structures, starting from the Casimirs of one of them, by the so called Lenard–Magri recursion scheme. Such framework is especially relevant in the applications of the theory of integrable systems to the Gromov–Witten theory. For further details see [5]. In this context the theory of deformations of a compatible pair of Poisson structures is very important. In particular we want to consider the formal deformation of a pair of compatible brackets up to the action of the so-called Miura group, which is the group of local diffeomorphisms of the space of dependent variables. We assume that these diffeomorphisms may depend on the formal deformation parameter. An algebraic reformulation of this deformation problem leads to the concept of bi- hamiltonian cohomology of a pair of Poisson structures. As usual in the deformation theory of algebraic structures, we can classify, in terms of some cohomology groups, the space that parametrizes possible infinitesimal deformations of a pair of brackets and the space that parametrizes the obstruction for a formal perturbative integration of an infinitesimal deformation. The computation of these cohomology groups in the general case is fairly difficult, and we refer the reader to the papers [1,2,4,7–10] for various particular computations, as well as surveys and reformulations of these ideas. In a recent paper [9], Liu and Zhang computed the bihamiltonian cohomology for the pair of brackets of the dispersionless KdV hierarchy up to degree 3 and conjectured that the cohomology vanishes in higher degree. 1. Introduction In this paper we propose a new method for the computation of the bihamiltonian cohomology groups. We introduce a filtration of a related polynomial complex and show that the corresponding spectral sequence collapses at the second page. That al- lows us to reconstruct the cohomology of such complex and consequently to obtain the bihamiltonian cohomology of the dispersionless KdV Poisson pencil. In particular, we reproduce the results of Liu and Zhang and prove their conjecture on the vanishing of the cohomology in higher degrees. 1.1. Outline of the paper. In Sect. 2 we recall the formalism of local functional polyvec- tor fields and the definition of bihamiltonian cohomology groups. In Sect. 3 we recall some textbook material on spectral sequences that we use to approach the problem. In Sect. 4 we introduce the filtration of the polynomial complex, we prove our theorems on its cohomology using the induced spectral sequence and derive the bihamiltonian cohomology of the dispersionless KdV Poisson pencil. 2. Formalism of Functional Polyvector Fields In this section, we introduce a minimal version of the necessary formalism of local func- tional polyvector fields and pose the main problem about the bihamiltonian cohomology for the dispersionless KdV hierarchy. For further details in the general case we refer to [5,9]. Bihamiltonian Cohomology of KdV Brackets 807 1. Basic definitions. Consider a supercommutative associative algebra ˆA defined as 2.1. Basic definitions. Consider a supercommutative associative algebra ˆA defined as ˆA := C∞(R)[[u1, u2, . . . ; θ0, θ1, θ2, . . . ]]. (1) (1) Here ui, i = 1, 2, . . . , are some formal even variables and θi, i = 0, 1, 2, . . . , are some odd variables. An element in C∞(R) is represented by a function of the coordinate u = u0 on R. ˆ Here ui, i = 1, 2, . . . , are some formal even variables and θi, i = 0, 1, 2, . . . , are some odd variables. An element in C∞(R) is represented by a function of the coordinate u = u0 on R. This algebra has two different gradations. We define the standard gradation on ˆA by assigning the degrees deg ui = deg θi = i, i = 0, 1, 2, . . . . (2) (2) and degree zero to both θ = θ0 and the elements in C∞(R). The standard degree d component of ˆA is denoted ˆAd. The super gradation is defined by assigning degree one to θi for i ⩾0 and degree zero to the remaining generators of ˆA. The super degree p component is denoted ˆAp. We also denote ˆAp d = ˆAd ∩ˆAp. (3) (3) We define the standard derivation on ˆA We define the standard derivation on ˆA ∂=  s⩾0  us+1 ∂ ∂us + θs+1 ∂ ∂θs  (4) (4) which is compatible with both gradations on ˆA, in particular it increases the standard degree by one and leaves invariant the super degree. The local functional polyvector fields are defined as the elements of the quotient ˆF = ˆA/∂ˆA, (5) (5) and the corresponding projection is denoted with the integral symbol and the corresponding projection is denoted with the integral symbol  : ˆA →ˆF. (6) (6) The gradations on ˆA, being compatible with the derivation ∂, define corresponding gradations on ˆF. 2. Formalism of Functional Polyvector Fields The corresponding homogeneous components are denoted with the obvious notations ˆFd, ˆF p and ˆF p d . The gradations on ˆA, being compatible with the derivation ∂, define corresponding gradations on ˆF. The corresponding homogeneous components are denoted with the obvious notations ˆFd, ˆF p and ˆF p d . The Schouten bracket [·, ·] on ˆA and, therefore, on ˆF (abusing notation we denote it by the same symbol) is defined in the standard way using the second order operator δuδθ, where δu := ∞  s=0 (−∂)s ∂ ∂us , δθ := ∞  s=0 (−∂)s ∂ ∂θs . (7) (7) 808 G. Carlet, H. Posthuma, S. Shadrin 2.2. Poisson structures. A Poisson structure is given by a local functional bivector field P ∈ˆF2 such that [P, P] = 0. The operator dP := [P, ·] on ˆF is induced from the operator DP defined on ˆA given by the following formula 2.2. Poisson structures. A Poisson structure is given by a local functional bivector field P ∈ˆF2 such that [P, P] = 0. The operator dP := [P, ·] on ˆF is induced from the operator DP defined on ˆA given by the following formula DP := ∞  s=0  ∂s(δθ P) ∂ ∂us + ∂s(δu P) ∂ ∂θs  . (8) (8) The deformation theory of a single Poisson bracket is controlled by the cohomology H( ˆF, dP). An important related space is H( ˆA, DP). ˆ Given P ∈ˆF2 1 a scalar Hamiltonian structure of hydrodynamic type, we have [3,6, 8,9] ˆ ˆA H( ˆF, dP) = H( ˆA, DP) = R ⊕Rθ. (9) (9) Thecohomology H( ˆA, DP)wascomputedin[8].In[9]thecohomology H>0( ˆF, dP) is derived from H( ˆA, DP) by a long exact sequence argument. The cohomology H0( ˆF, dP) can be easily computed in the scalar case by hand. A pencil of two commuting Poisson structures is given by two local functional bivec- tors P1, P2 ∈ ˆF2 such that [P1, P1] = [P2, P2] = [P1, P2] = 0. 2. Formalism of Functional Polyvector Fields In this case the deformation theory of the pair is controlled by the graded vector space BH( ˆF, dP1, dP2) := Ker dP1 ∩Ker dP2 Im  dP1dP2  (10) (10) thatiscalledthebihamiltoniancohomology.Foralmostallvaluesofthebi-grading(p, d) the computation of the bihamiltonian cohomology can be reduced to the computation of thatiscalledthebihamiltoniancohomology.Foralmostallvaluesofthebi-grading(p, d) the computation of the bihamiltonian cohomology can be reduced to the computation of BH( ˆA, DP1, DP2) := Ker DP1 ∩Ker DP2 Im  DP1 DP2  (11) (11) via a long exact sequence [9]. 2.3. Poisson structures of the dispersionless KdV. The two Poisson structures of the dispersionless KdV are given by the following two bi-vector fields: P1 := 1 2  θθ1, P2 := 1 2  uθθ1. (12) (12) The Schouten brackets with P1 and P2 induce the differentials D1 and D2 on the space ˆA and the differentials d1 and d2 on the space ˆF. A direct computation shows that The Schouten brackets with P1 and P2 induce the differentials D1 and D2 on the space ˆA and the differentials d1 and d2 on the space ˆF. A direct computation shows that D1 =  s⩾0 θs+1 ∂ ∂us , D2 =  s⩾0  ∂s(uθ1 + 1 2u1θ) ∂ ∂us + ∂s(1 2θθ1) ∂ ∂θs  . The main goal of this paper is to compute the graded vector space BH( ˆF, d1, d2). A closely related space is BH( ˆA, D1, D2) and we explain below the precise relation following the results of Liu and Zhang [9]. Bihamiltonian Cohomology of KdV Brackets 809 2.4. Grading and subcomplexes. Since θi, i = 0, 1, 2, . . . , are odd variables, we have a restriction on possible gradings p and d on the spaces ˆA and ˆF. Indeed, the minimal possible standard d-degree of a monomial in θi of super degree p is the degree of θ0 · · · θ p−1 equal to 0 + · · · + (p −1) = p(p −1)/2. So, ˆAp d = ˆF p d = 0 for d < p(p −1)/2. Another observation is related to the fact that the (p, d)-degree of the operators D1 and D2 (and, therefore, d1 and d2) is (1, 1). 2. Formalism of Functional Polyvector Fields Therefore, the difference p −d is preserved by both operators, and this means that the whole space ˆA (and ˆF) can be split into an a completion of an infinite direct sum of subcomplexes with the fixed difference p −d. The inequality d < p(p −1)/2 implies that each of these subcomplexes is finite. Let us give here first few examples (we write it for ˆF; for ˆA it is exactly the same): 0 →ˆF1 0 →ˆF2 1 →0 0 →ˆF0 0 →ˆF1 1 →ˆF2 2 →ˆF3 3 →0 0 →ˆF0 1 →ˆF1 2 →ˆF2 3 →ˆF3 4 →0 (13) 0 →ˆF0 2 →ˆF1 3 →ˆF2 4 →ˆF3 5 →ˆF4 6 →0 (13) So, we can compute the bihamiltonian cohomology of each subcomplex separately. Subcomplexes are fixed by the difference d −p = −1, 0, 1, 2 . . . . 3. Spectral Sequences With a Z-graded differential complex (C, d) with a filtration F∗C one associates a spectral sequence (E∗,∗ r , dr). The first two pages are given by Proposition 1. With a Z-graded differential complex (C, d) with a filtration F∗C one associates a spectral sequence (E∗,∗ r , dr). The first two pages are given by E p,q 0 = gr pC p+q (17) (17) and and E p,q 1 = d−1(F p+1C p+q+1) ∩F pC p+q d(F pC p+q−1) + F p+1C p+q , (18) (18) 3. Spectral Sequences In this section we recall some basic machinery from the theory of spectral sequences. Although this material is well-known (see e. g. [11]), we have decided to include it for the benefit of the reader, and because the precise construction of the pages of the spectral sequence allows in the end to reconstruct the cocycles representing nontrivial cohomology classes. In this way, our arguments in the next section computing the bi- hamiltonian cohomology using the spectral sequence of a filtration can be related to the explicit computations of [9]. A (cohomological type) spectral sequence is a family of differential Z-bigraded vector spaces (E∗,∗ r , dr) with differentials dr of bidegree (r, 1 −r) such that for all p, q ∈Z and all r ⩾0, the page E pq r+1 is isomorphic to the cohomology of the previous page H pq(E∗,∗ r , dr) := Ker(dr : E pq r →E p+r,q−r+1 r ) Im(dr : E p−r,q+r−1 r →E pq r ) . (14) (14) A spectral sequence is said to collapse at the N-th term if the differentials dr vanish for r ⩾N. In such case E∗,∗ r ∼= E∗,∗ N for r ⩾N. Then E∗,∗ ∞:= E∗,∗ N is called the limit term of the spectral sequence. Let (C, d) be a Z-graded differential complex (of R-vector spaces) with a differential d : C →C, d2 = 0, of degree 1. Let F∗C be a decreasing filtration of (C, d), i.e. a family of vector subspaces FiC of C, i ∈Z · · · ⊂Fi+1 ⊂FiC ⊂· · · ⊂C (15) (15) which are compatible with the differential, d(FiC) ⊂FiC. Let FiC p := FiC ∩C p be the induced filtration of the homogeneous component C p of degree p. Let us denote which are compatible with the differential, d(FiC) ⊂FiC. Let FiC p := FiC ∩C p be the induced filtration of the homogeneous component C p of degree p. Let us denote G. Carlet, H. Posthuma, S. Shadrin 810 by gr∗C and gr∗C p the graded spaces associated to the filtrations F∗C and F∗C p, respectively, i.e. by gr∗C and gr∗C p the graded spaces associated to the filtrations F∗C and F∗C p, respectively, i.e. griC = FiC Fi+1C , griC p = FiC p Fi+1C p . (16) (16) Proposition 1. with differentials d0, d1 induced by d on the quotients. We quickly review the construction of the spectral sequence associated with a filtered gradedcomplex.RecallthateachhomogeneouscomponentC p hasadecreasingfiltration FiC p and that the stability of the differential implies d(FiC p) ⊂FiC p+1. One starts by defining the subspaces of F pC p+q Z p,q r = d−1(F p+rC p+q+1) ∩F pC p+q, (19) B p,q r = d(F p−rC p+q−1) ∩F pC p+q (20) (19) (20) (19) (20) (19) (20) which form a tower which form a tower d(F pC p+q−1) = B p,q 0 ⊂B p,q 1 ⊂· · · ⊂Z p,q 1 ⊂Z p,q 0 = F pC p+q. (21) Notice moreover that B p,q −1 = d(F p+1C p+q−1) and Z p,q −1 = F pC p+q. We define the r-th page of the spectral sequence as d(F pC p+q−1) = B p,q 0 ⊂B p,q 1 ⊂· · · ⊂Z p,q 1 ⊂Z p,q 0 = F pC p+q. (21) e moreover that B p,q 1 = d(F p+1C p+q−1) and Z p,q 1 = F pC p+q. d(F pC p+q−1) = B p,q 0 ⊂B p,q 1 ⊂· · · ⊂Z p,q 1 ⊂Z p,q 0 = F pC p+q. (21) (21) ( ) 0 1 1 0 ( ) Notice moreover that B p,q −1 = d(F p+1C p+q−1) and Z p,q −1 = F pC p+q. We define the r-th page of the spectral sequence as Notice moreover that B p,q −1 = d(F p+1C p+q−1) and Z p,q −1 = F pC p+q. We define the r-th page of the spectral sequence as Notice moreover that B p,q −1 = d(F p+1C p+q−1) and Z p,q −1 = F pC p+q. We define the r-th page of the spectral sequence as 1 1 We define the r-th page of the spectral sequence as E p,q r = Z p,q r B p,q r−1 + Z p+1,q−1 r−1 , (22) (22) which is a well-defined quotient since Z p+1,q−1 r−1 ⊂Z p,q r . For r = 0, 1 this gives (17) and (18). One can check that d(Z p,q r ) = B p+r,q−r+1 r ⊂Z p+r,q−r+1 r , (23) (23) and, consequently, d(B p,q r−1 + Z p+1,q−1 r−1 ) = B p+r,q−r+1 r−1 . 4. Bihamiltonian Cohomology In this section we prove our main result, i.e. we compute the bihamiltonian cohomology BH p d ( ˆF, d1, d2) of the dispersionless KdV Poisson pencil. d p p The main step in our proof is the computation of the cohomology of the auxiliary complex ( ˆA[λ], Dλ) in Proposition 4. We define a filtration of such complex by imposing a bound on the highest derivative and we study the convergence of the associated spectral sequence. The first page E∗,∗ 1 is still highly non-trivial: we compute it in Lemma 5 and we give an explicit expression for the differential d1 in Lemma 7. The spectral sequence however collapses at the second term. This is proved by introducing an explicit contracting homotopy h for d1. Finally, the convergence theorem for bounded spectral sequences allows us to recover the cohomology of ( ˆA[λ], Dλ) by a standard argument. In Sect. 4.2 we use two arguments from [9] to compute the cohomology groups H( ˆF[λ], dλ) and the bihamiltonian cohomology groups BH( ˆA, D1, D2) and BH( ˆF, d1, d2). The first relates the bihamiltonian cohomology groups BH( ˆA, D1, D2), resp. BH( ˆF, d1, d2), to the cohomology of the complexes ( ˆA[λ], Dλ) , resp. ( ˆF[λ], dλ), cf. Lemma 10. The second employs a long exact sequence (73) to relate the cohomology of ( ˆF[λ], dλ) to that of ( ˆA[λ], Dλ). 4.1. The main proposition. We start by computing the cohomology of the complex ( ˆA[λ], Dλ), where Dλ = D2 −λD1. 4.1. The main proposition. We start by computing the cohomology of the complex ( ˆA[λ], Dλ), where Dλ = D2 −λD1. with differentials d0, d1 induced by d on the quotients. (24) (24) That means that the differential restricts to a map Z p,q r →Z p+r,q−r+1 r which de That means that the differential restricts to a map Z p,q r →Z p+r,q−r+1 r which descend p r r to the quotient in (22), defining the differential dr. Finally one can prove that the coho- mology of the differential dr on E p,q r coincides with E p,q r+1. Remark 2. One can check that H p,q(E∗,∗ 0 , d0) = E p,q 1 simply by computing kernel and image of d0 in E p,q 0 which shows that the cohomology is Z p,q 1 /F p+1C p+q B p,q 0 /F p+1C p+q ∼= Z p,q 1 B p,q 0 + F p+1C p+q = E p,q 1 . (25) (25) Bihamiltonian Cohomology of KdV Brackets 811 A filtration F∗C of a graded complex (C, d) is bounded if for each degree p there are integers s and t such that 0 = FsC p ⊂· · · ⊂Fi+1C p ⊂FiC p ⊂· · · ⊂FtC p = C p. (26) (26) The cohomology of a filtered graded complex (C, d) inherits a filtration, where Fi H(C, d) is given by the image of H(FiC, d) in H(C, d) under the inclusion map. The cohomology of a filtered graded complex (C, d) inherits a filtration, where Fi H(C, d) is given by the image of H(FiC, d) in H(C, d) under the inclusion map. The standard convergence theorem for the spectral sequence associated with a filtered graded complex states that, under the assumption of boundedness of the filtration, the limit term of the spectral sequence determines the graded space associated with the filtration of the cohomology of the complex. More precisely we have, see e.g. [11]: Theorem 3. The spectral sequence associated with a bounded filtration converges to H(C, d), i.e. + E p,q ∞∼= F pH p+q(C, d) F p+1H p+q(C, d). (27) (27) Proposition 4. H( ˆA[λ], Dλ) = R[λ] ⊕(C∞(R)/R[u])θθ1 ⊕C∞(R)θθ1θ2 (28) (28) Proof. The proof consists of two parts: first we define a filtration of the complex ( ˆA[λ], Dλ) and compute the first page E∗,∗ 1 of the associated spectral sequence. Then we compute the second page E∗,∗ 2 by defining an explicit contracting homotopy h for d1. It turns out that the spectral sequence E∗,∗ r collapses at the second page. Use of the standard convergence theorem for spectral sequences yields the desired result. Proof. The proof consists of two parts: first we define a filtration of the complex ( ˆA[λ], Dλ) and compute the first page E∗,∗ 1 of the associated spectral sequence. Then we compute the second page E∗,∗ 2 by defining an explicit contracting homotopy h for d1. It turns out that the spectral sequence E∗,∗ r collapses at the second page. Use of the standard convergence theorem for spectral sequences yields the desired result. 812 G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin Let ˆA(r) := C∞(R)[[u1, . . . , ur; θ, . . . , θr]], (29) (29) the subspace of ˆA where the order of x-derivatives is at most r. The quotient ˆA(r)/ ˆA(r−1) is canonically identified with the subspace ˆA[r] generated by monomials in ˆA(r) with at least one x-derivative of order r. Denote the subspace of ˆA where the order of x-derivatives is at most r. The quotient ˆA(r)/ ˆA(r−1) is canonically identified with the subspace ˆA[r] generated by monomials in ˆA(r) with at least one x-derivative of order r. Denote ˆA(r) d = ˆAd ∩ˆA(r), ˆA[r] d = ˆAd ∩ˆA[r] ∼= ˆA(r) d / ˆA(r−1) d (30) (30) the standard degree d homogeneous component of ˆA(r) and ˆA[r], respectively. We define the following decreasing filtration of ˆA[λ] We define the following decreasing filtration of ˆA[λ] Fi ˆA[λ] = ⎧ ⎨ ⎩a =  d⩾0 ad ∈ˆA[λ] s.t. ad ∈ˆA(d−i) d [λ] ⎫ ⎬ ⎭, (31) (31) for i ∈Z, which induces the filtration of the homogeneous component ˆAd[λ] Fi ˆAd[λ] = ˆA(d−i) d [λ]. (32) (32) This filtration is bounded i.e. 0 = Fd+1 ˆAd[λ] ⊂· · · ⊂Fi+1 ˆAd[λ] ⊂Fi ˆAd[λ] ⊂· · · ⊂F0 ˆAd[λ] = ˆAd[λ]. (33) 0 = Fd+1 ˆAd[λ] ⊂· · · ⊂Fi+1 ˆAd[λ] ⊂Fi ˆAd[λ] ⊂· · · ⊂F0 ˆAd[λ] = ˆAd[λ]. Proposition 4. (33 (33) Let (E∗,∗ r , dr) be the spectral sequence associated with the filtration Fi ˆA[λ]. By construction the zeroth page E∗,∗ 0 is given by the graded space associated with the filtration E pq 0 = gr p ˆAp+q[λ] ∼= ˆA[q] p+q[λ]. (34) (34) Note that E∗,∗ r is a first quadrant spectral sequence, i.e. E p,q r is non-trivial only if p, q ⩾0. In particular we have In particular we have E0,0 0 = ˆA0[λ], E p,0 0 = 0 for p > 0 (35) (35) and and E0,q 0 = uq ˆA0[λ] + θq ˆA0[λ] for q > 0. (36) (36) The differential d0 : E p,q 0 →E p,q+1 0 is simply the differential induced by Dλ on the graded space, i.e. The differential d0 : E p,q 0 →E p,q+1 0 is simply the differential induced by Dλ on the graded space, i.e. d0 : ˆA[q] p+q[λ] →ˆA[q+1] p+q+1[λ] (37) (37) explicitly given by d0 =  (u −λ)θq+1 + 1 2uq+1θ  ∂ ∂uq + 1 2θθq+1 ∂ ∂θq . (38) (38) By computing the cohomology of the complex (E∗,∗ 0 , d0) we get the first page of the spectral sequence. onian Cohomology of KdV Brackets 813 Bihamiltonian Cohomology of KdV Brackets Bihamiltonian Cohomology of KdV Brackets 813 Lemma 5. The non-trivial entries E p,q 1 of the first page of the spectral sequence are given by E0,0 1 = R[λ], (39) E0,1 1 = C∞(R) R[u] θθ1, (40) E p,q 1 = ˆA[q−1] p θθq for p ⩾1, q ⩾2. (41) 0,0 1 = R[λ], (39) (39) (40) E p,q 1 = ˆA[q−1] p θθq for p ⩾1, q ⩾2. (41) (41) Proof. Let us prove (41). Let p ⩾1, q ⩾1. The kernel of d0 in E p,q 0 is given by Proof. Let us prove (41). Let p ⩾1, q ⩾1. The kernel of d0 in E p,q 0 is given by θθq ˆA(q−1) p [λ] +  (u −λ)θq + 1 2uqθ  ˆA(q−1) p [λ]. (42) (42) To see this, let f ∈ˆA[q] p+q[λ] and write it as f = f0+θ f1 with both f0 and f1 independent of θ. The equation d0 f = 0 is equivalent to To see this, let f ∈ˆA[q] p+q[λ] and write it as f = f0+θ f1 with both f0 and f1 independent of θ. Proposition 4. The equation d0 f = 0 is equivalent to θ ∂f ∂uq = 0, (43) (u −λ) ∂f ∂uq −1 2θ ∂f ∂θq = 0. (44) (43) (44) he first one implies that f0 does not depend on uq hence it can be written as The first one implies that f0 does not depend on uq hence it can be written as f0 = θqg (45) (45) for g ∈ˆA(q−1) p [λ] independent of θ. ∈ˆA(q−1) p [λ] independent of θ. for g ∈ˆA(q−1) p [λ] independent of θ. p The second equation then becomes p The second equation then becomes (u −λ) ∂f1 ∂uq = 1 2g. (46) (46) This implies that, since g does not depend on uq and θq, then f1 = θq f2 + uq f3 (47) (47) for f2, f3 ∈ˆA(q−1) p [λ]. Then f is clearly of the form (42). 1 for f2, f3 ∈ˆA(q−1) p [λ]. Then f is clearly of the form (42). 1 for f2, f3 ∈ˆA(q−1) p [λ]. Then f is clearly of the form (42). Note that from (42) it follows immediately that E p,1 1 = 0 for p ⩾1. p q Note that from (42) it follows immediately that E1 0 for p ⩾1. Let us now restrict to q ⩾2. The image of d0 in E p,q 0 is given by elements of the form Let us now restrict to q ⩾2. The image of d0 in E p,q 0 is given by elements of the form    (u −λ)θq + 1 2uqθ  ∂˜g ∂uq−1 + θqθ  (u −λ) ∂˜f ∂uq−1 −1 2 ∂˜g ∂θq−1  (48) (48) where ˜g + θ ˜f is an arbitrary element in ˆA[q−1] p+q−1[λ] and ˜f and ˜g do not depend on θ. Let f be an element of the kernel (42), i.e. of the form where ˜g + θ ˜f is an arbitrary element in ˆA[q−1] p+q−1[λ] and ˜f and ˜g do not depend on θ. Let f be an element of the kernel (42), i.e. of the form f =  (u −λ)θq + 1 2uqθ  g + 1 2θθqh. (49) (49) Note that we can choose both g and h independent of θ. Note that we can choose both g and h independent of θ. 814 G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Proposition 4. Shadrin Let us now find another representative for the class [ f ] in E p,q 1 by subtracting an element of the image of d0 of the form (48). Choosing ˜g such that g = ∂˜g ∂uq−1 (50) (50) we obtain a representative of the form we obtain a representative of the form 1 2θθq  h − ∂˜g ∂θq−1 + 2(u −λ) ∂˜f ∂uq−1  . (51) (51) Since ˜g is a polynomial in uq−1, Eq. (50) fixes completely ˜g but for its part of degree zero in uq−1. Let ˜g = ˜g0 + ˜g1 where ˜g0 is the degree-zero part in uq−1. Since ∂˜g0 ∂θq−1 is an arbitrary term in ˆA(q−2) p [λ] which does not depend on θ, we can choose ˜g0 such that h + ∂˜g1 ∂θq−1 + ∂˜g0 ∂θq−1 (52) (52) is an element of ˆA[q−1] p [λ]. Finally we can choose ˜f to kill the λ dependence in (51). Equation (41) is proved. 0 q p It remains to show that E0,q 1 = 0 for q ⩾2, E0,1 1 = C∞(R)/R[u] and E0,0 1 = R[λ], which are straightforward computations. ⊓⊔ Remark 6. Note that E p,q 1 = 0 for p ⩽q −2, q ⩾2. ark 6. Note that E p,q 1 = 0 for p ⩽q −2, q ⩾2. Lemma 7. For p ⩾1, q ⩾2, the differential d1 : E p,q 1 →E p+1,q 1 is given by Lemma 7. For p ⩾1, q ⩾2, the differential d1 : E p,q 1 →E p+1,q 1 is given by d1( f θθq) =  (Dλ( f ))λ=u + q −2 2 θ1 f  θθq ∈ ˆA(q−1) p+1 θθq ˆA(q−2) p+1 θθq (53) (53) r f ∈ˆA[q−1] p . for f ∈ˆA[q−1] p . Proof. By definition the differential d1 is the map induced by Dλ on the first page of the spectral sequence written as Proof. By definition the differential d1 is the map induced by Dλ on the first page of the spectral sequence written as E p,q 1 = D−1 λ ˆA(q) p+q+1[λ] ∩ˆA(q) p+q[λ] Dλ ˆA(q−1) p+q−1[λ] + ˆA(q−1) p+q [λ] . (54) (54) For p ⩾1, q ⩾2, we can choose the representative of a class in E p,q 1 as an element in ˆA(q) p+q[λ] of the form f θθq with f ∈ ˆA[q−1] p . Proposition 4. Applying Dλ to such element, and quotienting by ˆA(q−1) p+q+1, we get For p ⩾1, q ⩾2, we can choose the representative of a class in E p,q 1 as an element in ˆA(q) p+q[λ] of the form f θθq with f ∈ ˆA[q−1] p . Applying Dλ to such element, and quotienting by ˆA(q−1) p+q+1, we get d1( f θθq) = Dλ( f )θθq + q −2 2 θ1 f θθq, (55) (55) where the right-hand represents an element in where the right-hand represents an element in ˆA[q] p+q+1[λ] Dλ ˆA(q−1) p+q [λ] ∩ˆA[q] p+q+1[λ] . (56) (56) onian Cohomology of KdV Brackets 815 Bihamiltonian Cohomology of KdV Brackets 815 Next, we quotient by Dλ ˆA(q−1) p+q [λ] ∩ˆA[q] p+q+1[λ] to get a representative of d1( f θθq) in ˆA(q−1) p+1 θθq. p+1 In other words we can add to (55) an element of the form (uθq + 1 2uqθ) ∂g ∂uq−1 + 1 2θθq ∂g ∂θq−1 −λθq ∂g ∂uq−1 (57) (57) for g ∈ˆA(q−1) p+q [λ] such that it kills the λ term in (55) i.e. for g ∈ˆA(q−1) p+q [λ] such that it kills the λ term in (55) i.e. θq  ∂g ∂uq−1 −θ D1( f )  = 0. (58) (58) It is clear that we can always choose an element g = θ ˜g such that this equation holds. We obtain a new representative for (55), that is It is clear that we can always choose an element g = θ ˜g such that this equation holds. We obtain a new representative for (55), that is  D2( f ) + q −2 2 θ1 f −u ∂˜g ∂uq−1  θθq, (59) (59) which, using (58), coincides with the desired result (53). which, using (58), coincides with the desired result (53). which, using (58), coincides with the desired result (53). g It remains to show that this element lives in the quotient It remains to show that this element lives in the quotient It remains to show that this element lives in the quotien ˆA(q−1) p+1 θθq ˆA(q−2) p+1 θθq . (60) (60) Let us look for elements in the denominator of (56) which are of the form hθθq with no λ dependence. remains to show that this element lives in the quotient Hence E1,2 2 = Ker  d1 : E1,2 1 →E2,2 1  = C∞(R)θθ1θ2. (64) (64) For the cases p ⩾1 and q ⩾2, (p, q) ̸= (1, 2), we shall construct an explicit homotopy for the differential d1. Introduce the operator U :=  s⩾1 (s + 2) 2 us ∂ ∂us +  s⩾0 (s −1) 2 θs ∂ ∂θs . Remark that this operator measures the degree of a monomial in ˆA where the weight of each us is (s + 2)/2 and of θs is (s −1)/2. From this it follows that U is invertible on E p,q 2 = ˆA[q−1] p θθq for p ⩾1, q ⩾2 and (p, q) ̸= (1, 2). Remark that this operator measures the degree of a monomial in ˆA where the weight of each us is (s + 2)/2 and of θs is (s −1)/2. From this it follows that U is invertible on E p,q 2 = ˆA[q−1] p θθq for p ⩾1, q ⩾2 and (p, q) ̸= (1, 2). Lemma 9. The operator Lemma 9. The operator h := U −1 ∂ ∂θ1 h := U −1 ∂ ∂θ1 is a contracting homotopy for d1 : E p,q 1 →E p+1,q 1 for p ⩾1, q ⩾2 and (p, q) ̸= (1, 2). is a contracting homotopy for d1 : E p,q 1 →E p+1,q 1 for p ⩾1, q ⩾2 and (p, q) ̸= (1, 2). roof. We should check that hd1 + d1h = 1. For this we split the differential d1 as d1 = Uθ1 + α. Proof. We should check that hd1 + d1h = 1. For this we split the differential d1 as d1 = Uθ1 + α. d1 = Uθ1 + α. Since U and θ1 clearly commute, the first term on the right hand side is a differential for which h is clearly a contracting homotopy, i.e., h(Uθ1) + (Uθ1)h = 1. 1 Since U and θ1 clearly commute, the first term on the right hand side is a differential for which h is clearly a contracting homotopy, i.e., h(Uθ1) + (Uθ1)h = 1. 1 Comparing with the explicit formula of the differential d1 in Lemma 7, we see that the first term Uθ1 in the expression for d1 above is exactly the part that depends on θ1. Proposition 4. An element of Dλ ˆA(q−1) p+q [λ] ∩ˆA[q] p+q+1[λ] is of the form Let us look for elements in the denominator of (56) which are of the form hθθq with no λ dependence. An element of Dλ ˆA(q−1) p+q [λ] ∩ˆA[q] p+q+1[λ] is of the form  (u −λ)θq + 1 2uqθ  ∂g ∂uq−1 + 1 2θθq ∂g ∂θq−1 (61) (61) for g ∈ˆA(q−1) p+q [λ]. To get an element of the form hθθq either ∂g ∂uq−1 is proportional to θ, but then we would obtain an element dependent on λ, or ∂g ∂uq−1 = 0 with g ∈ˆA(q−1) p+q . Without loss of generality we can then choose g ∈θq−1 ˆA(q−2) p+1 . We conclude that (53) lives indeed in (60). ⊓⊔ for g ∈ˆA(q−1) p+q [λ]. To get an element of the form hθθq either ∂g ∂uq−1 is proportional to θ, but then we would obtain an element dependent on λ, or ∂g ∂uq−1 = 0 with g ∈ˆA(q−1) p+q . Without loss of generality we can then choose g ∈θq−1 ˆA(q−2) p+1 . We conclude that (53) lives indeed in (60). ⊓⊔ Now we compute the second page E∗,∗ 2 . Now we compute the second page E∗,∗ 2 . Now we compute the second page E∗,∗ 2 . Lemma 8. The second page of the spectral sequence is given by E p,q 2 = ⎧ ⎪⎪⎪⎨ ⎪⎪⎪⎩ R[λ] p = 0, q = 0, C∞(R) R[u] θθ1 p = 0, q = 1 C∞(R)θθ1θ2 p = 1, q = 2 0 else. (62) (62) else. 816 G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin Proof. Let us first compute the nontrivial entries. By the vanishing of d1, the spectral sequences stabilizes at E0,0 1 and E0,1 1 , hence E0,0 2 = R[λ] and E0,1 2 = C∞(R) R[u] θθ1. On the other hand, an element ( f (u)θ1 + g(u)u1)θθ2 of E1,2 1 = ˆA[1] 1 θθ2 is in the kernel of d1 iff Proof. Let us first compute the nontrivial entries. By the vanishing of d1, the spectral sequences stabilizes at E0,0 1 and E0,1 1 , hence E0,0 2 = R[λ] and E0,1 2 = C∞(R) R[u] θθ1. Proposition 4. On the other hand, an element ( f (u)θ1 + g(u)u1)θθ2 of E1,2 1 = ˆA[1] 1 θθ2 is in the kernel of d1 iff d1  f θ1 + gu1 = 1 2gu1θθ1θ2 = 0. (63) (63) Hence Hence (The last term in Lemma 7 proportional to (q −2)θ1/2 is taken into account by the s = 0 term in the second summation in the formula for U.) Therefore α is exactly the part which does not contain θ1. By the fact that the number of θ’s in each summand for d1 is odd, it follows that ∂ ∂θ1 α + α ∂ ∂θ1 = 0. ∂ ∂θ1 α + α ∂ ∂θ1 = 0. Next, again from the explicit expression of Lemma 7, we easily check that deg(α) = 0, for the grading as described above, i.e., where deg(us) = (s + 2)/2 and deg(θs) = (s −1)/2. In other words, [U, α] = 0, and therefore hα + αh = 0. Combining this equation with the fact that h is already a contracting homotopy for Uθ1, we get that hd1 + d1h = 1 and the statement of the Lemma follows. ⊓⊔ g q y g we get that hd1 + d1h = 1 and the statement of the Lemma follows. ⊓⊔ Bihamiltonian Cohomology of KdV Brackets 817 We conclude that E p,q 2 = 0 for p ⩾1, q ⩾2, excluding the case p = 1, q = 2. This proves Lemma 8. ⊓⊔ 2 1 Let us return to the proof of Proposition 4. Since d2 maps E p,q 2 to E p+2,q−1 2 , it must vanish everywhere, in other words the spectral sequence collapses at the second term, and the limit term E∗,∗ ∞coincides with E∗,∗ 2 . 2 The filtration F∗of the complex ( ˆA[λ], Dλ) is bounded, hence it converges by The- orem 3, i.e. ˆ E p,q ∞∼= F pHp+q( ˆA[λ], Dλ) F p+1Hp+q( ˆA[λ], Dλ) . (65) (65) It follows in particular that for every (p, q) such that E p,q ∞= 0 we have F pHn( ˆA[λ], Dλ) ∼= F p+1Hn( ˆA[λ], Dλ) (66) (66) where n = p + q, and because the filtration is bounded we have where n = p + q, and because the filtration is bounded we have F0Hn( ˆA[λ], Dλ) = Hn( ˆA[λ], Dλ) (67) (67) and Fn Hn( ˆA[λ], Dλ) = 0 for n ̸= 0. (68) (68) Itisstraightforwardtoconcludethatthecohomologyisgivenby (28).TheProposition is proved. ⊓⊔ is proved. ⊓⊔ 4.2. Consequences. The following Lemma, proved in [9], relates the bihamiltonian cohomology of ˆA, resp. Hence (75) H1 1 ( ˆF[λ]) ∼= H2 1 ( ˆF[λ]) = H2 1 ( ˆA[λ]) = (C∞(R)/R[u])θθ1 (74) d) = (2, 3), (3, 3) that (74) H2 3 ( ˆF[λ]) ∼= H3 3 ( ˆF[λ]) = H3 3 ( ˆA[λ]) = C∞(R)θθ1θ2. (75) (75) It is easy to compute the d = 0 cases explicitly, thus obtaining the following: It is easy to compute the d = 0 cases explicitly, thus obtaining the following: Proposition 13. The non-trivial cohomology groups H p d ( ˆF[λ], dλ) are isomorphic to Proposition 13. The non-trivial cohomology groups Hd (F[λ], dλ) are isomorphic to C∞(R)/R[u] for (p, d) = (1, 1), (2, 1), (76) C∞(R) for (p, d) = (2, 3), (3, 3) (77) C∞(R)/R[u] for (p, d) = (1, 1), (2, 1), (76) C∞(R) for (p, d) = (2, 3), (3, 3) (77) (76) (77) (77) and R[λ] for (p, d) = (0, 0). and R[λ] for (p, d) = (0, 0). and R[λ] for (p, d) = (0, 0). ˆ and R[λ] for (p, d) = (0, 0). Theorem 14. For the bihamiltonian cohomology groups BH p d ( ˆF, d1, d2) we have Theorem 14. For the bihamiltonian cohomology groups BH p d ( ˆF, d1, d2) we have BH p d ( ˆF, d1, d2) ∼= ⎧ ⎪⎨ ⎪⎩ C∞(R) (p, d) = (1, 1), (2, 1), (2, 3), (3, 3), R (p, d) = (0, 0), 0 else. (78) (78) Proof. Follows from Lemma 10 and Proposition 13. Proof. Follows from Lemma 10 and Proposition 13. Thefour exceptional cases that cannot beobtainedfromLemma 10havetobechecked separately. It is a simple straightforward computation, so we provide here only an ex- ample for p = d = 1. The bihamiltonian cohomology group in this case is given by elements of ˆF1 1 that are in the kernel of both d1 and d2. A general element of ˆF1 1 is of the form    f (u)θ1 + g(u)u1θ  . (79) (79) This element is in the kernel of both d1 and d2, since, as one can easily check, both D1 and D2 map f (u)θ1 + g(u)u1θ to ∂ˆA2 1. (Recall that di  =  Di on ˆA). Finally we can quotient by ∂ˆA1 0 to obtain a representative of the form  h(u)u1θ. (80)  h(u)u1θ. (80) The remaining exceptional cases can be computed in a similar way. Hence Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin G. Carlet, H. Posthuma, S. Shadrin Remark 12. The bihamiltonian cohomology groups BH p d ( ˆA) for p = 2, 3, 4, d ⩾0 were computed in [9] by direct computation, i.e. without the use of Lemma 10. Remark 12. The bihamiltonian cohomology groups BH p d ( ˆA) for p = 2, 3, 4, d ⩾0 were computed in [9] by direct computation, i.e. without the use of Lemma 10. As noted in [9] the short exact sequence of differential complexes 0 →( ˆA[λ]/R[λ], Dλ) ∂−→( ˆA[λ], Dλ)  −→( ˆF[λ], dλ) →0 (72) (72) induces a long exact sequence in cohomology induces a long exact sequence in cohomology · · · →H p d−1( ˆA[λ]/R[λ]) →H p d ( ˆA[λ]) → →H p d ( ˆF[λ]) →H p+1 d ( ˆA[λ]/R[λ]) →· · · d 1 / d →H p d ( ˆF[λ]) →H p+1 d ( ˆA[λ]/R[λ]) →· · · (73) (73) for d ⩾1. Note that H p d ( ˆA[λ]/R[λ], Dλ) = H p d ( ˆA[λ], Dλ) unless p = d = 0. The vanishing of most of the groups H p d ( ˆA[λ], Dλ) implies at once the vanishing of H p d ( ˆF[λ], dλ) for p ⩾1 excluding the four cases (p, d) = (1, 1), (2, 1), (2, 3), (3, 3). Moreover the long exact sequence (73) at (p, d) = (1, 1), (2, 1) implies that for d ⩾1. Note that H p d ( ˆA[λ]/R[λ], Dλ) = H p d ( ˆA[λ], Dλ) unless p = d = 0. The vanishing of most of the groups H p d ( ˆA[λ], Dλ) implies at once the vanishing of H p d ( ˆF[λ], dλ) for p ⩾1 excluding the four cases (p, d) = (1, 1), (2, 1), (2, 3), (3, 3). Moreover the long exact sequence (73) at (p, d) = (1, 1), (2, 1) implies that H1 1 ( ˆF[λ]) ∼= H2 1 ( ˆF[λ]) = H2 1 ( ˆA[λ]) = (C∞(R)/R[u])θθ1 (74) and at (p, d) = (2, 3), (3, 3) that H2 3 ( ˆF[λ]) ∼= H3 3 ( ˆF[λ]) = H3 3 ( ˆA[λ]) = C∞(R)θθ1θ2. Hence ˆF, with the cohomology of the complex ( ˆA[λ], Dλ), resp. ( ˆF[λ], dλ). We give a slightly modified version adapted to the scalar case. Lemma 10. We have Lemma 10. We have Lemma 10. We have BH p d ( ˆA, D1, D2) ∼= H p d ( ˆA[λ], Dλ), (69) BH p d ( ˆF, d1, d2) ∼= H p d ( ˆF[λ], dλ) (70) (69) (70) for p, d ⩾0 excluding (p, d) = (0, 0), (1, 0), (1, 1), (2, 1). for p, d ⩾0 excluding (p, d) = (0, 0), (1, 0), (1, 1), (2, 1). for p, d ⩾0 excluding (p, d) = (0, 0), (1, 0), (1, 1), (2, 1). Proof. One can repeat the proof given in [9]. Such proof of (69) relies on the fact that H p d ( ˆA, D1) = 0 and H p−1 d−1 ( ˆA, D1) = 0. Since in the scalar case H p d ( ˆA, D1) = 0 unless (p, d) = (0, 0), (1, 0), we need to exclude the four cases above. The analogous remark applies to (70). ⊓⊔ Proof. One can repeat the proof given in [9]. Such proof of (69) relies on the fact that H p d ( ˆA, D1) = 0 and H p−1 d−1 ( ˆA, D1) = 0. Since in the scalar case H p d ( ˆA, D1) = 0 unless (p, d) = (0, 0), (1, 0), we need to exclude the four cases above. The analogous remark applies to (70). ⊓⊔ Theorem 11. The bihamiltonian cohomology groups are given by Theorem 11. The bihamiltonian cohomology groups are given by BH p d ( ˆA, D1, D2) = ⎧ ⎪⎪⎪⎨ ⎪⎪⎪⎩ R p = 0, d = 0, C∞(R)θθ1 p = 2, d = 1, C∞(R)θθ1θ2 p = 3, d = 3, 0 else. (71) (71) Proof. It is a direct consequence of (28) and (69) for all p, d ⩾0 but the four cases (p, d) = (0, 0), (1, 0), (1, 1), (2, 1). The four exceptional cases can be quickly obtained by straightforward calculations. ⊓⊔ Proof. It is a direct consequence of (28) and (69) for all p, d ⩾0 but the four cases (p, d) = (0, 0), (1, 0), (1, 1), (2, 1). The four exceptional cases can be quickly obtained by straightforward calculations. ⊓⊔ 818 G. References . Arsie, A., Lorenzoni, P.: On bihamiltonian deformations of exact pencils of hydrodynamic type. J. Phy A 44(22), 225205 (2011) A 44(22), 225205 (2011) 2. Barakat, A.: On the moduli space of deformations of bihamiltonian hierarchies of hydrodynamic type. Adv. Math. 219(2), 604–632 (2008) . Barakat, A.: On the moduli space of deformations of bihamiltonian hierarchies of hydrodynamic type. Adv Math. 219(2), 604–632 (2008) 3. Degiovanni, L., Magri, F., Sciacca, V.: On deformation of Poisson manifolds of hydrodynamic type. Com- mun. Math. Phys. 253(1), 1–24 (2005) 3. Degiovanni, L., Magri, F., Sciacca, V.: On deformation of Poisson manifolds of hydrodynamic type. Com- mun. Math. Phys. 253(1), 1–24 (2005) y 4. Dubrovin, B., Liu, S.-Q., Zhang, Y.: On Hamiltonian perturbations of hyperbolic systems of conservation laws. I. Quasi-triviality of bihamiltonian perturbations. Commun. Pure Appl. Math. 59(4), 559–615 (2006) . Dubrovin, B., Liu, S.-Q., Zhang, Y.: On Hamiltonian perturbations of hyperbolic systems of conservatio laws. I. Quasi-triviality of bihamiltonian perturbations. Commun. Pure Appl. Math. 59(4), 559–615 (2006 4. Dubrovin, B., Liu, S.-Q., Zhang, Y.: On Hamiltonian perturbations of hyperbolic systems of conservation laws. I. Quasi-triviality of bihamiltonian perturbations. Commun. Pure Appl. Math. 59(4), 559–615 (2006) 5. Dubrovin, B., Zhang, Y.: Normal forms of hierarchies of integrable PDEs, Frobenius manifolds and laws. I. Quasi-triviality of bihamiltonian perturbations. Commun. Pure Appl. Math. 59(4), 559–615 (2006) 5. Dubrovin, B., Zhang, Y.: Normal forms of hierarchies of integrable PDEs, Frobenius manifolds and Gromov–Witten invariants. arXiv:math/0108160 5. Dubrovin, B., Zhang, Y.: Normal forms of hierarchies of integrable PDEs, Frobenius manifolds and Gromov–Witten invariants. arXiv:math/0108160 . Getzler, E.: A Darboux theorem for Hamiltonian operators in the formal calculus of variations. Duk Math. J. 111(3), 535–560 (2002) . Liu, S.-Q., Zhang, Y.: Deformations of semisimple bihamiltonian structures of hydrodynamic type. J Geom. Phys. 54(4), 427–453 (2005) y ( ) ( ) 8. Liu, S.-Q., Zhang, Y.: Jacobi structures of evolutionary partial differential equations. Adv. Math. 227(1), 73–130 (2011) 8. Liu, S.-Q., Zhang, Y.: Jacobi structures of evolutionary partial differential equations. Adv. Math. 227(1), 73–130 (2011) ( ) ( ) 9. Liu, S.-Q., Zhang, Y.: Bihamiltonian cohomologies and integrable hierarchies I: a special case. Commun. Math. Phys. 324(3), 897–935 (2013) ( ) ( ) 9. Liu, S.-Q., Zhang, Y.: Bihamiltonian cohomologies and integrable hierarchies I: a special case. Commun. Math. Phys. 324(3), 897–935 (2013) y 10. Lorenzoni, P.: Deformations of bihamiltonian structures of hydrodynamic type. J. Geom. Phys. Hence ⊓⊔ he remaining exceptional cases can be computed in a similar way. ⊓⊔ Bihamiltonian Cohomology of KdV Brackets 819 cknowledgments. The authors were supported by the Netherlands Organization for Scientific Research. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 Inter- national License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. References 44(2- 3), 331–375 (2002) 10. Lorenzoni, P.: Deformations of bihamiltonian structures of hydrodynamic type. J. Geom. Phys. 44(2- 3), 331–375 (2002) 11. McCleary, J.: A user’s guide to spectral sequences. Second edition. Cambridge Studies in Advanced Mathematics, vol. 58. Cambridge University Press, Cambridge (2001) 11. McCleary, J.: A user’s guide to spectral sequences. Second edition. Cambridge Studies in Advanced Mathematics, vol. 58. Cambridge University Press, Cambridge (2001) Communicated by N. Reshetikhin
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https://eprint.iacr.org/2020/183.pdf
English
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A note on secure multiparty computation via higher residue symbols
Journal of mathematical cryptology
2,021
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9,886
2010 Mathematics Subject Classification: 11T71, 94A60 2010 Mathematics Subject Classification: 11T71, 94A60 Open Access. © 2021 I. Cascudo and R. Schnyder, published by De Gruyter. This work is licensed under the Creative Commons Attribution 4.0 License Ignacio Cascudo: IMDEA Software Institute, 28223 Pozuelo de Alarcon, Madrid, Spain; Email: ignacio.cascudo@imdea.org. Much of this work was carried out while Ignacio was with the Department of Mathematical Sciences, Aalborg University, Den- mark. *Corresponding Author: Reto Schnyder: Department of Mathematical Sciences, Aalborg University, 9220 Aalborg, Denmark; Email: reto@math.aau.dk Ignacio Cascudo and Reto Schnyder* A note on secure multiparty computation via higher residue symbols https://doi.org/10.1515/jmc-2020-0013 Received Mar 17 2020; accepted Dec 07 2020 https://doi.org/10.1515/jmc-2020-0013 Received Mar 17, 2020; accepted Dec 07, 2020 Abstract: We generalize a protocol by Yu for comparing two integers with relatively small difference in a secure multiparty computation setting. Yu’s protocol is based on the Legendre symbol. A prime number p is found for which the Legendre symbol (· | p) agrees with the sign function for integers in a certain range {−N, . . . , N} ⊂Z. This can then be computed efficiently. fi We generalize this idea to higher residue symbols in cyclotomic rings Z[ζr] for r a small odd prime. We present a way to determine a prime number p such that the r-th residue symbol (· | p)r agrees with a desired function f : A →{ζ 0r , . . . , ζ r−1 r } on a given small subset A ⊂Z[ζr], when this is possible. We also explain how to efficiently compute the r-th residue symbol in a secret shared setting. Keywords: secure multiparty computation, cyclotomic rings, power residue symbol J. Math. Cryptol. 2021; 15:284–297 Outline of the paper In Section 2, we present basic definitions and facts about the power residue symbol in a cyclotomic ring. We then present the idea of our protocol in Section 3, and in Section 4 we explain in detail how to compute the residue symbol. Then, in Section 5, we present a method for finding an appropriate modulus p given a desired function to compute. We give a toy example in Section 6 to illustrate our ideas. Finally, in Section 7, we compare our method to other constant-round protocols for computing arbitrary functions. Our contribution In this paper, we present a generalization of the idea of [12] by using the residue symbol in a cyclotomic ring Z[ζr], for some odd prime r. The goal is to compute a chosen function f : A →{0, . . . , r −1} in a limited domain A ⊂Fp[ζr]. We develop a method for finding a prime number p such that the r-th power residue symbol coincides with f on the domain A, when this is possible:︂︂ (︂a p )︂ r = ζ f(a) r for each a ∈A. As in [12], our protocol requires an ofine precomputation phase, but has an online phase consisting of a single round. As an added benefit, the output of f is obtained in a one-hot encoding, which can be helpful if it is e.g. used in a condition for a branching algorithm. Unfortunately, we are not currently aware of a practical use of our protocol, since the limitations on the size of A are too strict. However, we hope that our new ideas motivate future work that can lessen these restrictions and find applications where our idea outperforms existing solutions. 285 Secure multiparty computation via higher residue symbols An alternative idea for comparison of secret values is given in [12]. Their protocol attempts to compute the sign of a secret shared value [a]Fp by computing the Legendre symbol (a | p). For this to work, they must choose the prime modulus p in such a way that all values {1, . . . , N} are quadratic residues modulo p, for a relatively large N, and that −1 is a quadratic non-residue. Then, it holds that sgn(a) = (a | p) for −N ≤a ≤N. Two integers a and b can then be compared by computing sgn(a −b) = (a −b | p), assuming |a −b| ≤N. The Legendre symbol can be computed relatively easily in a secret-shared setting using a few rounds of precomputation and a single online round. Yu shows that at any given order of magnitude, a prime p can be found which satisfies the desired properties with N being of size Ω(log p). The inspiration for this protocol comes from [7], where the idea is first presented for the special case N = 2, p = 7. In [1], the authors improve on Yu’s method and extend the range where the comparison is valid by a factor of roughly three, for a given modulus size. They achieve this by computing the residue symbol on a small neighbourhood of the input value and performing a majority vote. They also provide another protocol that increases the valid range by a factor of five compared to Yu, but requires an additional online round. 1 Introduction In secure multiparty computation (MPC), a group of parties, each of which has some secret data, wish to collaboratively compute a function on it without revealing their inputs. A common technique for this is to represent the inputs as elements of a finite field Fp and represent the function as an arithmetic circuit over that finite field, i.e. as an expression consisting of nested sums and products over Fp involving the inputs and public values, and then process this circuit gate-by-gate. For example in secret-sharing based secure multiparty computation protocols, inputs are secret shared among the parties using a linear secret sharing scheme, such as Shamir’s scheme [10] or additive secret sharing. In such a scheme, addition of two secrets and multiplication of a secret by a public value can be done by simply performing the operation locally. Multiplication of two secrets can be achieved with a small amount of additional communication between the parties. See for example the book [4] for details about how this plays out in a number of secret-sharing based MPC protocols. But many other operations are more complicated to perform in a secret shared setting, especially those that do not correspond to natural operations in a finite field. Examples for this are integer comparison, integer division and modular reduction by values that are coprime to p. Protocols that compute such operations often rely on decomposing a shared value into its binary representation, after which the operation can be performed on secret shared bits [e.g. 5]. However, this decomposition involves a significant computational and communication cost, so there is much interest in more straightforward protocols for these operations. There are other protocols which do not rely on the decomposition of shared values, but still operate in a bitwise manner by using random pre-decomposed sharings [9]. Ignacio Cascudo: IMDEA Software Institute, 28223 Pozuelo de Alarcon, Madrid, Spain; Email: ignacio.cascudo@imdea.org. Much of this work was carried out while Ignacio was with the Department of Mathematical Sciences, Aalborg University, Den- mark. *Corresponding Author: Reto Schnyder: Department of Mathematical Sciences, Aalborg University, 9220 Aalborg, Denmark; E il h dk If a ∈p, we define (a | p)r = 0. The group of units R* is the direct product of the group of roots of unity in R and the group of positive real units (R ∩R>0)*. Lemma 5. Let a, b ∈R, such that b is a non-unit coprime to r and a. Suppose that each of a and b is either real or purely imaginary. Then, (a | b)r = 1. Lemma 5. Let a, b ∈R, such that b is a non-unit coprime to r and a. Suppose that each of a and b is either real or purely imaginary. Then, (a | b)r = 1. Proof. First, note that for any prime ideal p not containing r, we have︂︂ Proof. First, note that for any prime ideal p not containing r, we have︂︂ Proof. First, note that for any prime ideal p not containing r, we have︂︂ (︂−1 p )︂ r ≡(−1) Np−1 r (mod p), ︂︂ which is 1 if p lies above an odd prime number, and −1 if it lies above 2. But in the second case, −1 ≡1 (mod p), so either way, (−1 | p)r = 1. which is 1 if p lies above an odd prime number, and −1 if it lies above 2. But in the second case, −1 ≡1 (mod p), so either way, (−1 | p)r = 1. ow c ∈R \ p, and let (c | p)r = ζ sr . We have Let now c ∈R \ p, and let (c | p)r = ζ sr . We have Let now c ∈R \ p, and let (c | p)r = ζ sr . We have c Np−1 r = ζ s r + k with k ∈p, c Np−1 r = ζ −s r + k with k ∈p, c Np−1 r = ζ s r + k with k ∈p, c Np−1 r = ζ −s r + k with k ∈p, where · denotes complex conjugation, and we see that (c | p)r = (c | p)r. By multiplicativity, these two properties apply also if we replace the lower argument p by any b ∈R coprime to r. where · denotes complex conjugation, and we see that (c | p)r = (c | p)r. By multiplicativity, these two properties apply also if we replace the lower argument p by any b ∈R coprime to r. 286 | I. Cascudo and R. Schnyder 286 | I. Cascudo and R. Schnyder 2 The power residue symbol Let r be an odd prime. Let R = Z[ζr] be the r-th ring of cyclotomic integers, considered as a subring of C. Here, ζr is a primitive r-th root of unity. If b is an ideal of R, we denote by Nb its norm. Definition 1 (See [8, Prop. 14.2.1]). Let p be a nonzero prime ideal of R such that r ∉ p, and let a ∈R \ p. Then, there exists an integer s, unique modulo r, such that ζ s r ≡a Np−1 r (mod p). We define the r-th power residue symbol as︂ (︂a p )︂ r = (a | p)r = ζ s r . 286 If a ∈p, we define (a | p)r = 0. It holds that a is an r-th power modulo p if and only if (a | p)r = 1. Clearly, the power residue symbol is multiplicative in the first argument. That is, for a, b ∈R, we have (︂ab p )︂ r = (︂a p )︂ r (︂b p )︂ r . (︂ab p )︂ r = (︂a p )︂ r (︂b p )︂ r . If b is any proper ideal of R coprime to r, we extend the power residue symbol multiplicatively. That is, if b factors into prime ideals as b = p1 · · · ps, then (︂a b )︂ r = s∏︁ i=1 (︂a pi )︂ r . ︁ Finally, if b ∈R is any non-unit coprime to r, we simply define︂︂︂︂ ︁ Finally, if b ∈R is any non-unit coprime to r, we simply define︂︂︂︂ (︂a b )︂ r = (︂a (b) )︂ r , where (b) is the ideal generated by b. ︂︂︂︂ where (b) is the ideal generated by b. where (b) is the ideal generated by b. Definition 2 (See [8, p. 206]). An element a ∈R is called primary if it is coprime to r, not a unit and congruent to a rational integer modulo (1 −ζr)2. Definition 2 (See [8, p. 206]). An element a ∈R is called primary if it is coprime to r, not a unit and congruent to a rational integer modulo (1 −ζr)2. If a ∈R is coprime to r and not a unit, then there is a unique k ∈{0, . . . , r −1} such that ζ kr a is primary. If a ∈R is coprime to r and not a unit, then there is a unique k ∈{0, . . . , r −1} such that ζ kr a is primary. Theorem 3 (Eisenstein Reciprocity, [8, Theorem 1, p. 207]). Let b ∈Z be coprime to r and not a unit. Let a ∈R be primary and coprime to b. Then, (︂ )︂ (︂b )︂ (︂a b )︂ r = (︂b a )︂ r . (︂a b )︂ r = (︂b a )︂ r . Theorem 4 (See [3, Theorem 4.9]). The group of units R* is the direct product of the group of roots of unity in R and the group of positive real units (R ∩R>0)*. Theorem 4 (See [3, Theorem 4.9]). 3 The basic idea Since the residue symbol (a | p)r depends only on a modulo p, it is now possible to evaluate the function f at a ∈A by instead evaluating (a | p)r. We will see in Section 4 how to do this efficiently. Remark 7. In the above, instead of getting a sharing of the result f(a) ∈{0, . . . , r −1} directly, we end up with the root of unity ζ f(a) r ∈F. If we decompose (a | p)r = a0 + a1ζr + · · · + ar−2ζ r−2 r with ai ∈Fp, this almost results in a one-hot encoding of f(a). The only difference is that r−1 is represented by ai = −1 for all i. A proper one-hot encoding can be computed locally by setting br−1 = (1−a0 −· · ·−ar−2)/r and bi = ai + br−1 for i < r −1. If we prefer to share the result as a single value, we can then easily compute that as 0b0 +1b1 +· · ·+(r −1)br−1. If a ∈p, we define (a | p)r = 0. Hence, for a and b as in the statement of the lemma, we get or a and b as in the statement of the lemma, we get (︂a b )︂ r = (︂a b )︂ r = (︂±a ±b )︂ r = (︂a b )︂ r , (︂a b )︂ r = (︂a b )︂ r = (︂±a ±b )︂ r = (︂a b )︂ r , ︂︂︂︂︂︂︂︂ which therefore has to be 1. which therefore has to be 1. which therefore has to be 1. which therefore has to be 1. which therefore has to be 1. which therefore has to be 1. Secure multiparty computation via higher residue symbols | 287 287 4 Secure computation of the residue symbol We will show how to compute the power residue symbol based on any arithmetic black-box protocol over the field Fp, for example based on secret sharing. This is analogous to how the Legendre symbol is computed in [12]. We note that only the upper argument of the residue symbol is secret, whereas the lower argument p is public. In order to explain how we do this, we first need to detail the model in which we will work. 3 The basic idea The basic idea of our protocol is the following. Suppose we are given a function f : A →{0, . . . , r −1}, where A is a subset of R. We hope to find a prime number p such that the function f corresponds to the r-th power residue symbol with lower argument p on A. That is,︂︂ (︂a p )︂ r = ζ f(a) r for each a ∈A. (1) (1) ︂︂ Then, we can securely compute f(a) by computing the residue symbol, which can hopefully be done more efficiently.i We will see in Section 5 how we can find such a prime p. Note however, that condition (1) often contains internal contradictions or other impossible requirements. It is then necessary to adapt A and f to resolve these. Remark 6. In practice, to avoid the aforementioned internal contradictions in our requirements, the actual input values will first be encoded via some (ideally affine) function mapping to A. One can try many such encodings until one is found that is not contradictory. We will give considerations on the existence of good encodings in Section 5.3, and we will see an example in Section 6. Let us note some initial requirements on the prime p. First, we want that (p) is a prime ideal of R, which is the case whenever p is different from r and does not split in R. We need this to be the case so that we can use basic facts about (a | p)r, and so that F = R/(p) is a finite field of size pr−1. For reasons we will see later, we also wish for the value (ζr | p)r to be ζr. It would be possible to fix it to another primitive root of unity, but that would complicate our analysis. We will show in Section 5 how to achieve this.i In our protocol, we will be using the fields Fp and F = R/(p). Note that an element in F can be represented by r −1 elements of Fp via the basis {1, ζr, . . . , ζ r−2 r }. So given a linear secret sharing scheme over Fp, we can consider a sharing of an element in F as a sharing of r −1 elements of Fp. See Section 4 for details. From encodings over Fp to encodings over F As mentioned before, an encoding (e.g. a sharing) [x]F of an element in F will simply be the encoding in Fp of each of its coordinates xi ∈Fp with respect to the basis {1, ζr, . . . , ζ r−2 r }, i.e. ([x0]Fp, [x1]Fp, . . . , [xr−2]Fp). Both additions and products of F-encodings can be obtained by operating on the Fp-encodings of their coordinates. Specifically, additions of two F-encodings require r −1 additions of Fp-encodings (by just adding coordinate- wise the vectors of Fp-encodings), so in the case of a linear secret sharing scheme it can be done locally by the shareholders. Multiplying by a public constant in R can also be done locally, but it may involve up to O(r2) additions and multiplications of Fp-encodings by Fp-constants (depending on the public constant). Finally, products of two F-encodings require O(r2) products and O(r2) additions of Fp-encodings. Preprocessing A usual resource in secure multiparty computation protocols is preprocessing: the fact that parties can initiate and typically carry out the heavy part of the secure computation protocol even before the (encoded) inputs are provided. That is, we can split the computation in two phases: a preprocessing, or ofine phase, which is the phase carried out before the inputs are given and where the parties compute encodings of random correlated information; and an online phase, which uses the input and is typically much lighter. We will use this approach in our protocols too. the protocol.¹ Security in this case means the adversary cannot infer more information about non-corrupted parties’ inputs and outputs than what is already implied by the corrupted parties’ inputs and outputs. Our techniques work in fact on top of any secure computation protocol for arithmetic operations over Fp. This means that any given party can create an encoding [x]Fp of a value x ∈Fp known to that party, so that: the adversary cannot obtain any knowledge about x from [x]Fp; there is a protocol that allows the set of all parties to recover x ∈Fp from [x]Fp; and given sharings of elements x, y ∈Fp (where x, y may not be known by the same party, in fact they may not be known by anybody) there are secure computation subprotocols that allow parties to compute encodings for x + y, xy and ax for public a ∈Fp (denoted respectively [x + y]Fp = [x]Fp + [y]Fp, [xy]Fp = [x]Fp[y]Fp, [ax]Fp = a[x]Fp). The customary example for this are secret-sharing based secure computation protocols, where the encoding [·]Fp is given by a secret sharing scheme. This scheme is furthermore often linear, which allows computing [x + y]Fp (resp. [ax]Fp) given [x]Fp, [y]Fp (resp. a and [x]Fp) by having each party operate locally on their shares, i.e., it requires no interaction among parties.f There exist many secret-sharing based arithmetic protocols which are secure against different types of adversaries, depending on which sets of parties the adversary can corrupt (the adversary structure) and whether we assume a restriction on the computational capabilities of the adversary or not (where we speak respectively of computational or information-theoretical security). For example, one can construct arithmetic black-box protocols which are information-theoretically secure against adversaries that can corrupt any set of t parties where t < n/2, and protocols which are computationally secure against adversaries corrupting any set of n −1 parties. Our protocols will inherit the security properties from the arithmetic black-box protocol over Fp, with respect to the adversary structure and adversary computational capabilities it tolerates. Secure computation model We consider the usual situation in secure multiparty computation: n parties P1, . . . , Pn want to jointly compute the output of certain (public) function on private inputs which belong to some of the parties, by means of some protocol in which the parties can communicate over point-to-point secure channels between each pair of parties. We will consider a static, semi-honest adversary, that corrupts some subset of parties at the onset of the protocol, and gets to see all communication received by these parties, but cannot make them deviate from 8 | I. Cascudo and R. Schnyder 288 1 We note that many techniques are known to upgrade protocols which are secure against semi-honest adversaries to settings where corrupted parties may deviate from the protocol (where the adversary is called malicious or active). Computing the residue symbol In the online phase, described in Algorithm 3, the parties then wish to compute the residue symbol of a secret shared value [a]F. We assume that a is known to be nonzero, which can be guaranteed by using a suitable encoding, as in Remark 6. Suppose we have a fresh random solved instance ([x]F, [︀x′]︀ F). The parties compute and open ax, which is uniformly random in F* and hence does not reveal any information about a. They can then compute the residue symbol (ax | p)r in the clear, and finally obtain︂︂︂︂︂︂ [︂(︂a p )︂ r ]︂ F = (︂ax p )︂ r · [︀x′]︀−1 F . Inversions of roots of unity Our algorithms will also need to invert F-encodings of r-th roots of unity in R (seen as elements in F), that is the elements ζ ir, i = 0, . . . , r −1. Note that (ζ ir)−1 = ζ r−i r . Moreover, in the basis {1, ζr, . . . , ζ r−2 r }, ζ ir is given by 1 We note that many techniques are known to upgrade protocols which are secure against semi-honest adversaries to settings where corrupted parties may deviate from the protocol (where the adversary is called malicious or active). Secure multiparty computation via higher residue symbols | 289 the i-th unit vector (numbering from 0 to r −2) if i < r −1, and by the vector (−1, −1, . . . , −1) if i = r −1, since ζ r−1 r = −1 −ζr −· · · −ζ r−2 r the i-th unit vector (numbering from 0 to r −2) if i < r −1, and by the vector (−1, −1, . . . , −1) if i = r −1, since ζ r−1 r = −1 −ζr −· · · −ζ r−2 r . ζr ζr ζr Therefore, given [x]F = ([x0]Fp, [x1]Fp, [x2]Fp . . . , [xr−2]Fp) where x = ζ ir for some i, it is easy to see that [x]−1 F := [︁ x−1]︁ F = ([x0 −x1]Fp, [−x1]Fp, [xr−2 −x1]Fp, . . . , [x2 −x1]Fp). iven [x]F = ([x0]Fp, [x1]Fp, [x2]Fp . . . , [xr−2]Fp) where x = ζ ir for some i, it is e [x]−1 F := [︁ x−1]︁ F = ([x0 −x1]Fp, [−x1]Fp, [xr−2 −x1]Fp, . . . , [x2 −x1]Fp). [ ]F [ ]Fp [ ]Fp [ ]Fp [ ]Fp ζ [x]−1 F := [︁ x−1]︁ F = ([x0 −x1]Fp, [−x1]Fp, [xr−2 −x1]Fp, . . . , [x2 −x1]Fp). ︁︁ In particular, if the Fp-encoding is given by a linear secret sharing scheme, these inversions can be computed locally. ︁︁ In particular, if the Fp-encoding is given by a linear secret sharing scheme, these inversions can be computed locally. Computing random elements of F The parties can compute a uniformly random element of F in the usual way, described in Algorithm 1. Each party Pi chooses and shares a uniformly random value [xi]F. These values are then summed up: [x]F = ∑︀n i=0[xi]F. In this way, the value x is uniformly random and secret. Arithmetic operations with random elements Given [x]F, [r]F, where r is uniformly random in the sense above, opening [x + r]F gives no additional informa- tion about x apart from the a priori knowledge parties might have about x. If parties open [xr]F and find out that xr ≠ 0, the only new information parties may learn about x is that x ≠ 0, but all other information about x is protected. Computing a random solved instance In a preprocessing phase, the parties need to compute a random solved instance of the power residue symbol. That is, they want a pair of shared values ([x]F, [︀x′]︀ F), where x′ = (x | p)r and x is uniformly random in F* and unknown to the parties. To do this, we proceed as in [12], and in Algorithm 2. The parties first select two uniformly random shared values [a]F and [b]F and multiply them: [d]F = [a]F[b]F. They then compute and open f = dr. If this is zero, they abort. Otherwise, they know that a and d are uniformly random and independent elements of F*, since F is a finite field. The parties then compute an r-th root ^d of f in the clear. We see that d/^d is a uniformly random r-th root of unity. Hence, [x]F = [a]r F[d]F ^d , [︀x′]︀ F = [︂(︂x p )︂ r ]︂ F = [d]F ^d ︀︀ constitute a uniformly random solved instance. Recall that we require (ζr | p)r = ζr, so that (d/^d | p)r = d/^d. ︀︀ constitute a uniformly random solved instance. Recall that we require (ζr | p)r = ζr, so that (d/^d | p)r = d/^d. inputs, the values [a]F and [b]F can be generated and [d]F = [a]F[b]F computed at the same time. Then, [d]r F and [a]r F[d]F are computed, and [d]r F opened, in the third round. This gives a total cost of 3 rounds, as well as 2r + 3 invocations of Algorithm 1 and 6r + 2 multiplications of elements in F. The online phase costs a single multiplication in F and one opening, which can be done in a single round. Recall that computing the inverse of a root of unity can be done locally. Recall that multiplication of elements in F is more expensive than multiplication in Fp, a naïve implemen- tation taking O(r2) multiplications in the base field, which however can be done in parallel in a single round. Also, unbounded fan-in multiplication precludes the use of square-and-multiply methods for exponentiation. However, since the exponent r is typically very small, that is not necessary. Each party Pi selects and shares a uniformly random [xi]F ∈F [x]F ←∑︀n i=1[xi]F return [x]F Algorithm 2 Ofine phase: Find a random solved instance ([x]F, [︀x′]︀ F) of the residue symbol, i.e. x′ = (x | p)r. Algorithm 2 Ofine phase: Find a random solved instance ([x]F, [︀x′]︀ F) of the residue symbol, i.e. x′ = (x | p)r. [a]F ←R F [b]F ←R F [d]F ←[a]F[b]F f ←[d]r F if f = 0 then abort end if ^d ← r√︀ f [︀x′]︀ F ←[d]F/^d [x]F ←[a]r F [︀x′]︀ F return ([x]F, [︀x′]︀ F) [a]F ←R F [b]F ←R F [d]F ←[a]F[b]F f ←[d]r F if f = 0 then abort end if ^d ← r√︀ f [︀x′]︀ F ←[d]F/^d [x]F ←[a]r F [︀x′]︀ F return ([x]F, [︀x′]︀ F) Algorithm 3 Online phase: Compute the residue symbol of [a]F, given a solved instance ([x]F, [︀x′] Computational and communication cost The ofine phase (Algorithm 2) can be optimized using the unbounded fan-in multiplication of [9], based on [2], which takes 3 rounds, 2l invocations of Algorithm 1 and 3l −1 multiplications to secretly multiply l values. Since the first two rounds of the unbounded fan-in multiplication protocol are independent of the I. Cascudo and R. Schnyder | I. Cascudo and R. Schnyder 290 Furthermore, we wish to fix (ζr | p)r = ζr. Since︂ Furthermore, we wish to fix (ζr | p)r = ζr. Since Furthermore, we wish to fix (ζr | p)r = ζr. Since (︂ζr p )︂ r = ζ pr−1−1 r r , (︂ζr p )︂ r = ζ pr−1−1 r r , (︂ζr p )︂ r = ζ pr−1−1 r r , (︂ζr p )︂ r = ζ pr−1−1 r r , by definition, this is equivalent to having pr−1 ≡r + 1 (mod r2). This gives us the first equation for p: let M0 = {q ∈Z/r2Z | q is a generator of F*r and qr−1 = r + 1}. M0 = {q ∈Z/r2Z | q is a generator of F*r and qr−1 = r + 1}. Then, we require that p ∈M0 (mod r2). ℓ Then, we require that p ∈M0 (mod r2). Then, we require that p ∈M0 (mod r ). We now wish to impose a condition of the form (a | p)r = ζ ℓr for some a ∈R \ {0} and ℓ∈Z. We need to distinguish multiple cases. We now wish to impose a condition of the form (a | p)r = ζ ℓr for some a ∈R \ {0} and ℓ∈Z. We need to distinguish multiple cases. Case 2: a is coprime to r and not a unit k There is some k ∈Z such that ^a = ζ kr a is primary. So we want that p is coprime to a and ζ ℓ r != (︂a p )︂ r = (︂ζr p )︂−k r (︂^a p )︂ r = ζ −k r (︂p ^a )︂ r = ζ −k r (︂p mod N(^a) ^a )︂ r , the last equation holds because the value of the residue symbol (p | ^a)r depends only on p modulo N(^a). This gives us another modular equation for p: let Ma = {︂ q ∈Z/N(^a)Z ⃒⃒⃒⃒ (︂q ^a )︂ r = ζ ℓ+k r }︂ . ︂ Then, we require that p ∈Ma (mod N(^a)). Then, we require that p ∈Ma (mod N(^a)). Then, we require that p ∈Ma (mod N(^a)). Case 1: a is a unit Case : a s a u t By Theorem 4, we can write a = ±ζ kr u, where k ∈Z and u is a positive real unit. Applying Lemma 5, we see that︂︂︂︂︂︂ By Theorem 4, we can write a = ±ζ kr u, where k ∈Z and u is a positive real unit. Applying Lemma 5, we see that (︂a p )︂ r = (︂±u p )︂ r (︂ζ kr p )︂ r = ζ k r , which is independent of p. Requirements of this form are hence satisfied either for all primes under considera- tion or for none. If it is never satisfied, the requirements need to be adjusted by choosing a new encoding as in Remark 6. which is independent of p. Requirements of this form are hence satisfied either for all primes under considera- tion or for none. If it is never satisfied, the requirements need to be adjusted by choosing a new encoding as in Remark 6. 5 Finding the modulus We are looking for a suitable prime modulus p by checking the conditions (1) for many primes p. While it is possible to do this by simply computing (a | p)r for all a ∈A, the computation of the residue symbol is relatively expensive in practice. In the following, we instead translate the conditions into equations of the form p ∈Ma (mod Na) for a ∈A, where Ma ⊆Z/NaZ and Na > 1, which are much faster to check. Recall from Section 3 that we want (p) to be a prime ideal of R. This is equivalent to p being a generator of the multiplicative group F*r, by [8, Theorem 2, p. 196]. Hence, this condition depends only on p modulo r. Secure multiparty computation via higher residue symbols | 291 Secure multiparty computation via higher residue symbols | 291 Secure multiparty computation via higher residue symbols | 291 Secure multiparty computation via higher residue symbols | 291 292 | I. Cascudo and R. Schnyder 292 | I. Cascudo and R. Schnyder 5.1 Computing the conditions We describe the algorithm for computing a set of generators for the subgroup Ha in the following setting, which is related to the hidden subgroup problem. We describe the algorithm for computing a set of generators for the subgroup Ha in the following setting, which is related to the hidden subgroup problem. Finding a subgroup with known index Suppose we are given an abelian group of the form G = Z/k1Z × · · · × Z/knZ, where k1, . . . , kn ∈Z>1. Suppose furthermore that we have access to the characteristic function χ: G →{0, 1} of a subgroup H ⊆G of index dividing r, where r is a known prime number. That is, χ(x) = 1 if and only if x ∈H. The goal is to find a set of generators of H, using only a small number of invocations of χ. First, we note that by pulling H back along the projection homomorphism π: Zn →G, we get a lattice ˜H containing k1Z × · · · × knZ. Let ˜χ = χ ∘π be the characteristic function of ˜H. We now find a basis for ˜H, which maps to a set of generators of H. Every full rank lattice contained in Zn has a unique basis given by the columns of a full rank n × n integer matrix B in Hermite normal form [6]. That is, B = (Bij) satisfies Bij = 0 for 1 ≤i < j ≤n, Bii > 0 for 1 ≤i ≤n, 0 ≤Bij < Bii for 1 ≤j < i ≤n. Bij = 0 for 1 ≤i < j ≤n, Bij = 0 for 1 ≤i < j ≤n, Bii > 0 for 1 ≤i ≤n, 0 ≤Bij < Bii for 1 ≤j < i ≤n. 0 ≤Bij < Bii for 1 ≤j < i ≤n. Let B now be such a basis matrix for the lattice ˜H. The determinant of B is equal to the index of the subgroup H in G, and hence divides the prime r by assumption. This means that B has at most one diagonal entry equal to r, with all others being 1. For example, the matrix B might look like this: B = ⎛ ⎜ ⎜ ⎜ ⎝ 1 0 0 0 0 1 0 0 a1 a2 r 0 0 0 0 1 ⎞ ⎟ ⎟ ⎟ ⎠, with 0 ≤a1, a2 < r.i 1, 2 To find the basis h1, . . . , hn of ˜H, we now proceed as in Algorithm 4. Let e1, . . . , en be the standard basis vectors of Zn. 5.1 Computing the conditions How do we find the elements of the set Ma? First, we note that Ma is contained in (Z/N(^a)Z)*. Since it appears inevitable that our procedure takes at least polynomial time in N(^a), the brute force method of simply computing (q | ^a)r for each q ∈(Z/N(^a)Z)* seems viable. However, computation of the residue symbol is relatively expensive in practice, so we use a method that requires only few invocations of the residue symbol. Since the residue symbol is multiplicative, the set︂︂︂︂ Since the residue symbol is multiplicative, the set︂︂︂︂ Since the residue symbol is multiplicative, the set︂ Ha = {︂ q ∈(Z/N(^a)Z)* ⃒⃒⃒⃒ (︂q ^a )︂ r = 1 }︂ ︂︂︂︂ is a subgroup of (Z/N(^a)Z)*. If Ha is the entirety of (Z/N(^a)Z)*, the condition p ∈Ma (mod N(^a)) is satisfied for all values or no value of p. In the latter case, we need to start over with a new encoding of the inputs (see Remark 6). ︂︂︂︂ is a subgroup of (Z/N(^a)Z)*. If Ha is the entirety of (Z/N(^a)Z)*, the condition p ∈Ma (mod N(^a)) is satisfied for all values or no value of p. In the latter case, we need to start over with a new encoding of the inputs (see Remark 6). If however Ha is a proper subgroup, it follows that it has index r, and that the set Ma is a coset of Ha. We use the fact that the index is known to efficiently find a set of generators for Ha, after which the entirety of Ma can easily be computed.ii For this, we first need to find a set of generators g1, . . . , gn of (Z/N(^a)Z)*, of orders k1, . . . , kn, which induce an isomorphism his, we first need to find a set of generators g1, . . . , gn of (Z/N(^a)Z)*, of orders k1, . . . , kn, which isomorphism Z/k1Z × · · · × Z/knZ ∼ −−→(Z/N(^a)Z)*. Z/k1Z × · · · × Z/knZ ∼ −−→(Z/N(^a)Z)*. Z/k1Z × · · · × Z/knZ ∼ −−→(Z/N(^a)Z)*. The Sage computer algebra system [11] contains a function that provides these generators, with the same complexity as factoring N(^a). The Sage computer algebra system [11] contains a function that provides these generators, with the same complexity as factoring N(^a). Case 3: a is not coprime to ri Let first µ = 1 −ζ 2r , which is a prime element of R. Note that (︂µ p )︂ r = (︂ζr p )︂ r (︂ζ −1 r −ζr p )︂ r = ζr by Lemma 5, since ζ −1 r −ζr is purely imaginary. The ideal (r) factors as (µ)r−1 in R, so we can write a = µm˜a for some m > 0 and ˜a coprime to r. (m is the valuation of a at (µ).) We proceed as before with ˜a instead of a. If ˜a is a unit, then as in Case 1, the requirement is either always satisfied or never. If ˜a is not a unit, let k ∈Z such that ^a = ζ kr ˜a is primary. We end up with the set by Lemma 5, since ζ −1 r −ζr is purely imaginary. The ideal (r) factors as (µ)r−1 in R, so we can write a = µm˜a for some m > 0 and ˜a coprime to r. (m is the valuation of a at (µ).) We proceed as before with ˜a instead of a. If ˜a is a unit, then as in Case 1, the requirement is either always satisfied or never. If ˜a is not a unit, let k ∈Z such that ^a = ζ kr ˜a is primary. We end up with the set Ma = {︂ q ∈Z/N(^a)Z ⃒⃒⃒⃒ (︂q ^a )︂ r = ζ ℓ+k−m r }︂ , and we require that p ∈Ma (mod N(^a)). Finding a subgroup with known index We let i decrease from n to 1, and so go through the columns of B from right to left. To find the basis h1, . . . , hn of ˜H, we now proceed as in Algorithm 4. Let e1, . . . , en be the standard basis vectors of Zn. We let i decrease from n to 1, and so go through the columns of B from right to left. Secure multiparty computation via higher residue symbols | 293 293 1. For as long as ˜χ(ei) = 1, we simply set hi = ei.i 2. If ˜χ(ei) = 0, we know that we have reached the column with r in the diagonal, so we set hi = rei and fix J = i. 3. For each of the remaining values of i, we search for the unique a ∈{0, . . . , r−1} such that ˜χ(ei+aeJ) = 1, and set hi = ei + aeJ. This way, we can compute the basis of ˜H using at most (n −1)r + 1 invocations of χ. Note that if the index of H is 1, the algorithm simply returns the original basis e1, . . . , en. Algorithm 4 Computing a basis of a sublattice ˜H ⊆Zn of prime index r, given the characteristic fun ˜H Algorithm 4 Computing a basis of a sublattice H ⊆Zn of prime index r, given the characteristic function χ of ˜H. J ←0 for i from n to 1 do if J = 0 then if ˜χ(ei) = 1 then hi ←ei else hi ←r · ei J ←i end if else for a from 0 to r −1 do if ˜χ(ei + aeJ) = 1 then hi ←ei + aeJ end if end for end if end for Remark 8. In the case relevant to this paper, χ is given by the residue symbol, which not only tells us whether an element is in H, but in which coset of H it lies. In this case, the value a in step 3 above can be computed with a single invocation of χ, which reduces the total number of invocations needed to just n. Remark 9. The algorithm can easily be generalized to the case where r is not prime, in which case there may be multiple diagonal entries not equal to 1. It requires at most nr invocations of χ. 2 This assumption is reasonable if the N(^a) for a ∈A and r are pairwise coprime. If this is not the case, the dependence may be helpful or harmful. 5.2 Complexity of finding the modulus Given the equations we determined above, what size can we expect for the smallest prime p that satisfies them, assuming that they are indeed satisfiable? We have seen in Section 5.1 that Ma for a ∈A is a subset of (Z/N(^a)Z)* of size at least φ(N(^a))/r, if it is not empty, where φ is the Euler phi function. Since in practice p is a prime larger than any N(^a), its reduction modulo N(^a) will always lie in (Z/N(^a)Z)*. Let us assume that the reductions of p in (Z/N(^a)Z)* for a ∈A and in (Z/r2Z)* are uniformly random and independent, for random p.² Then we have p ∈Ma (mod N(^a)) with probability at least 1/r. Further, p ∈M0 is satisfied with 2 This assumption is reasonable if the N(^a) for a ∈A and r are pairwise coprime. If this is not the case, the dependence may be helpful or harmful. | I. Cascudo and R. Schnyder 294 probability φ(r −1)/φ(r2) > 1/r2. We can hence estimate the smallest prime satisfying the equations to have size at most O(r|A|+2(|A| + 2) log r) by the prime number theorem.i To check if a given prime integer p satisfies the conditions (1), we could simply compute (a | p)r for all a ∈A. A single such test can be done by raising a to the (N(p) −1)/r-th power in R/(p), which takes O(log N(p)) = O(r log p) multiplications in R/(p), or O(r3 log p) multiplications in Fp, giving a time complexity of ˜O(r3 log2 p) using Schönhage-Strassen multiplication. By the previous paragraph, we expect that we need to test around ˜O(r|A|+2) primes, taking time around ˜O(r|A|+2 · |A| · r3 log2(r|A|+2)) = ˜O(r|A|+5|A|3). We also need to test ˜O(r|A|+2|A|) integers for primality, which takes time ˜O(r|A|+2|A| log2 r|A|) = ˜O(r|A|+2|A|3) using Miller-Rabin.i Instead, in the method described in the beginning of Section 5, we first list the sets Ma for all a ∈A. Using the idea described in Section 5.1, we expect the dominating cost to be the enumeration of Ma after the generators have been found. If n is an upper bound on the norms of the elements of A, we can then estimate the time and memory cost of the first step to be ˜O(n|A|). Then, checking a single condition from (1) consists of a modular reduction of integers and a set membership test, taking time ˜O(log p). 5.2 Complexity of finding the modulus In this case the cost of the Miller-Rabin primality test dominates, giving an estimated total time complexity for the second step of ˜O(r|A|+2|A|3). Alternatively, the Sieve of Eratosthenes can be used to reduce this to ˜O(r|A|+2|A|2) at the cost of ˜O(r|A|+2|A|) memory. Although the asymptotic estimates for the two methods are quite similar, our experiments indicate that the second method is significantly faster when the norms of the elements of A are not too large. However, we will see in Section 5.3 that the case of large norms is interesting as well. 5.3 Existence of a good encoding As mentioned in and before Remark 6, for a given choice of A and f : A →{0, . . . , r −1} it is often impossible to satisfy (1) due to internal contradictions. So in order to compute a desired function f ′ : A′ →{0, . . . , r −1}, we need to find some values of A and f that do not lead to such contradictions, together with an encoding (an affine map) E: A′ →A satisfying f ∘E = f ′.i For small choices of A′, it may be possible to find an encoding using trial and error, as we have done in the example of Section 6. We do not know of a guaranteed way to find good encodings, but we give some considerations on the matter.f One common cause of contradictions is that different elements of A can have prime factors in common (or prime factors that are conjugates of each other under an automorphism of R). Trying to satisfy some of the requirements in (1) can fix the residue symbol on the prime factors, which may end up fixing the residue symbol of some other element of A to an undesirable value. To avoid this, we could try to find an encoding such that no two distinct elements of A have prime factors that are conjugates of each other. Proposition 10. Let A′ ⊂R be a finite subset containing no two distinct elements that are conjugate to each other under an automorphism of R.i Let s′ be the product of all nonzero elements of the form a −σ(b) for a, b ∈A′ and σ ∈Aut(R). De as the product of all (integer) prime numbers dividing N(s′), and let q ∈Z be coprime to s. Then, no two distinct elements of A = {q + as | a ∈A′} have prime factors that are conjugate under an automorphism of R. Proof. Let p be a prime element of R dividing s. Since p does not divide q, it cannot divide q + as for any a ∈A′. Suppose now that we have a, b ∈A′, σ ∈Aut(R) and a prime element p ∤s such that p | q + as and σ(p) | q + bs. Hence, p | (q + as) −σ−1(q + bs) = (a −σ−1(b))s. p | (q + as) −σ−1(q + bs) = (a −σ−1(b))s. 5.3 Existence of a good encoding Since p is prime and does not divide s, it must divide a −σ−1(b). However, if a −σ−1(b) is nonzero, its prime factors are also factors of s by definition. Hence a = σ−1(b), and so a = b by the condition on A′. 295 Secure multiparty computation via higher residue symbols In this case, the norms N(a) for a ∈A are pairwise coprime. The norms N(^a) are furthermore coprime to r by construction of ^a (see Section 5). Under the assumption that the equations q ∈Ma (mod N(^a)) and q ∈M0 (mod r2) are individually satisfiable, it then follows by the Chinese remainder theorem and Dirichlet’s prime number theorem that a prime solution p exists that satisfies all at once.i However, it is not guaranteed that the individual equations are satisfiable. For example, the residue symbol (^a | p)r for ^a a unit, or an r-th power, or real or purely imaginary is independent of p, so Ma may be empty. Since these types of elements are relatively uncommon, it may nonetheless be possible to avoid them with a good choice of A. In fact, if A′ is chosen as a subset of Z, the construction in Proposition 10 will always result in A ⊂Z. It is therefore necessary to choose an A′ that does not consist of integers, for example by finding a suitable “pre-encoding” E′ : A′′ →A′. The downside of this approach is that it results in a ∈A of very large norm, which can make the sets Ma unmanageably large. It may therefore be preferable to simply test the conditions (1) directly instead of applying the method described in the beginning of Section 5.i When the norms N(^a), a ∈A, and r are pairwise coprime, there is another approach to finding a solution p that does not require enumerating Ma: Let N = r2 ∏︀ a∈A N(^a), and pick a random element ba ∈Ma for each a ∈A, as well as b0 ∈M0. It should be feasible to find these if they exist, since at least one in r elements of (Z/N(^a)Z)* is in Ma. Then, use the Chinese remainder theorem to translate (ba)a∈A∪{0} to b ∈(Z/NZ)*, and test if b is prime. If not, multiply b by a random r-th power in (Z/NZ)* congruent to 1 modulo r2 and test again. This way, we expect to find a prime in around log(N) steps. 5.3 Existence of a good encoding Unfortunately, the resulting prime will be of size O(N), which may be too large for practical purposes. 6 Toy example We conclude that (︂11 + xζr p )︂ r = ζ x mod 3 r 6 Toy example We present an example, in which we compute reduction modulo 3 for integers x ∈{0, . . . , n} for some small n. We pick r = 3. This example was constructed with the help of the Sage computer algebra system [11]. Setting A = {0, . . . , n} and f(x) = x mod 3 cannot work for this, since (x | p)r = 1 for all valid primes p and x ∈Z with p ∤x, by Lemma 5. Instead, we encode the problem as follows. Let n = 18, and A = {11 + xζr | 0 ≤x ≤18} f(11 + xζr) = x mod 3. This encoding was found by trial and error. Then, following our procedure from Section 5, we get This encoding was found by trial and error. Then, following our procedure from Section 5, we get M0 = {q ∈Z/9Z | q is a generator of F* 3 and q2 ≡4} = {2}. M0 = {q ∈Z/9Z | q is a generator of F* 3 and q2 ≡4} = {2}. For e.g. a = 11 + 5ζr, we have f(a) = ℓ= 2, so we want (a | p)r = ζ 2r . We have N(a) = 91, so a is coprime to 3. Furthermore, ^a = ζra = 6ζr −5 is primary, so k = 1. We hence get︂︂︂︂ Ma = {︂ q ∈Z/91Z ⃒⃒⃒⃒ (︂q ^a )︂ r = ζ ℓ+k r = ζ 3 r = 1 }︂ = {1, 2, 4, 8, 16, 17, 23, 27, 32, 34, 37, 45, 46, 54, 57, 59, 64, 68, 74, 75, 83, 87, 89, 90}. Ma = {︂ q ∈Z/91Z ⃒⃒⃒⃒ (︂q ^a )︂ r = ζ ℓ+k r = ζ 3 r = 1 }︂ Similarly, we find Ma for all other a ∈A.i Similarly, we find Ma for all other a ∈A. Finally, we use brute force to find a prime p which lies in M0 and in each Ma after the appropriate modular reduction. The smallest one is i Finally, we use brute force to find a prime p which lies in M0 and in each Ma after the appropriate modular reduction. The smallest one is p = 26 403 527. p = 26 403 527. (︂11 + xζr p )︂ r = ζ x mod 3 r p = 26 403 527. 7 Alternatives There are several alternatives for computing an arbitrary function f : A →{0, . . . , r −1} in a secret shared manner using a constant number of rounds.³i There are several alternatives for computing an arbitrary function f : A →{0, . . . , r −1} in a secret shared manner using a constant number of rounds.³i For example, one may use Lagrange interpolation to find a degree |A| −1 polynomial F ∈R[x] that agrees with f on A. The polynomial can then be evaluated in three rounds using unbounded fan-in multiplication [2, 9], the first two of which can be done in precomputation. This compares favourably to our protocol, which has three ofine and one online round. Furthermore, polynomial interpolation works for any prime modulus larger than max{|A|, r}, whereas our protocol requires a specific and much larger prime modulus. On the other hand, our protocol has the advantage of requiring fewer multiplications, namely O(r) instead of O(|A|). One could also consider decomposing f into a sequence of two-valued functions f1, . . . , fk : A →{0, 1} and computing each using the Legendre symbol. It would then be necessary to find k different (affine) encodings Ei : A →Z, 1 ≤i ≤k, and a prime p such that fi(a) agrees with 2(Ei(a) | p) −1 simultaneously for all i. Such encodings could be found using similar ideas to those presented in Section 5.3 and [12]. If we assume that the Ei have disjoint images, and that the residue symbol on the elements of these images are uniformly random and independent, this would give us a p of expected size O(2k|A|k|A|). If we use a one-hot encoding to represent f(x) = 1f1(x) + · · · + (r −1)fr−1(x), we get k = r −1, which results in a much larger estimate for p than in our method. One could instead choose k = ⌈log2 r⌉and encode f as a Boolean circuit in the fi. This would result in a similar expected size for p as in our protocol, but may require extra rounds to evaluate the circuit, especially if a one-hot encoding of the output is desired. Compared to our protocol, this method takes the same number of ofine rounds, but either gives a larger expected p or requires extra online rounds. for 0 ≤x ≤18. One can show that it is not possible to extend the example above to a = 11 + 19ζr. 296 | I. Cascudo and R. Schnyder 296 7 Alternatives In some cases, the estimate for p can be improved by choosing Ei with overlapping images. For example, using a one-hot encoding for the function f(x) = x mod 3 of our toy example, one may notice that f2(x) = f1(x −1) and so use two mostly overlapping encodings. 3 Note that the alternatives we mention require sending messages of size at least linear in the size of the domain of the function |A|, which we expect to be the case for our protocol too, given the estimate for p in Section 5.2. 8 Conclusion We have introduced a protocol for secure multiparty computation which allows the evaluation of certain desired functions f : A →{0, . . . , r −1} on secret shared values, for a small subset A ⊂Z[ζr] of the r-th cyclotomic ring, where r is a small prime. Our protocol is a generalization of a protocol by Yu [12], and makes use of the residue symbol of Z[ζr], by getting it to agree with the desired function on A. It uses only a single round in the online phase, and a constant number of ofine preprocessing rounds.i We can then use this idea to compute a function g over a more “natural” domain, like A′ ⊂Z, by first encoding it as a function f : A →{0, . . . , r −1} in a suitable way. As we have shown in the example, there may be different ways of doing this encoding, and the feasibility and performance of our technique may depend on the chosen encoding.ii It is an open question to find concrete applications where our protocol has significant advantages over alternative solutions, such as polynomial interpolation. It is also of interest to improve and formalize the methods of encoding a desired function in such a way as to be compatible with the residue symbol, and so that p remains reasonably small, which so far we have mostly done by trial and error. Acknowledgement: This work is supported by Aalborg University under the SECURE project. y y We wish to thank an anonymous reviewer for the alternative idea of encoding a function in terms of several two-valued functions, see Section 7. Secure multiparty computation via higher residue symbols | 297 297 Secure multiparty computation via higher residue symbols | 2 References [1] M. Abspoel, N. J. Bouman, B. Schoenmakers and N. de Vreede, Fast Secure Comparison for Medium-Sized Integers and Its Application in Binarized Neural Networks, in: Topics in Cryptology – CT-RSA 2019 (M. Matsui, ed.), Springer, Cham, pp. 453–472, 2019. pp [2] J. Bar-Ilan and D. Beaver, Non-Cryptographic Fault-Tolerant Computing in Constant Number of Rounds of Interaction, in: Proc. 8th ACM Symp. on Principles of Distributed Computing, PODC ’89, pp. 201–209, ACM, New York, 1989. [3] Y. F. Bilu, Y. Bugeaud and M. Mignotte, The Problem of Catalan, Springer, Cham, 2014. [4] R. Cramer, I. B. Damgård and J. B. Nielsen, Secure Multiparty Computation and Secret Sharing, Cambridge University Press, New York, 2015. [5] I. Damgård, M. Fitzi, E. Kiltz, J. B. Nielsen and T. Toft, Unconditionally Secure Constant-Rounds Multi-party Computation for Equality, Comparison, Bits and Exponentiation, in: Theory of Cryptography (S. Halevi and T. Rabin, eds.), Springer, Berlin, Heidelberg, pp. 285–304, 2006. [6] C. Dwork, Lattices and Their Application to Cryptography, Lecture Notes, Stanford University, 1998. [7] U. Feige, J. Killian and M. Naor, A Minimal Model for Secure Computation, in: Proc. 26th ACM Symp. on Theor STOC ’94, pp. 554–563, ACM, New York, 1994. pp [8] K. Ireland and M. Rosen, A Classical Introduction to Modern Number Theory, 2nd ed, Graduate Texts in Mathematics 84, Springer-Verlag, New York, 1990. [9] T. Nishide and K. Ohta, Multiparty Computation for Interval, Equality, and Comparison Without Bit-Decomposition Protocol, in: Public Key Cryptography – PKC 2007 (T. Okamoto and X. Wang, eds.), pp. 343–360, Springer, Berlin, Heidelberg, 2007. [10] A. Shamir, How to Share a Secret, Commun. ACM 22 (1979), 612–613. [11] W. A. Stein et al., Sage Mathematics Software (Version 9.1), The Sage Development Team, 2020. [12] C.-H. Yu, Sign Modules in Secure Arithmetic Circuits., Cryptology ePrint Archive, Report 2011/539, 2011.
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English
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A transcriptome analysis of mitten crab testes (Eriocheir sinensis)
Genetics and Molecular Biology
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Abstract The identification of expressed genes involved in sexual precocity of the mitten crab (Eriocheir sinensis) is critical for a better understanding of its reproductive development. To this end, we constructed a cDNA library from the rapid de- velopmental stage of testis of E. sinensis and sequenced 3,388 randomly picked clones. After processing, 2,990 high-quality expressed sequence tags (ESTs) were clustered into 2,415 unigenes including 307 contigs and 2,108 singlets, which were then compared to the NCBI non-redundant (nr) protein and nucleotide (nt) database for annota- tion with Blastx and Blastn, respectively. After further analysis, 922 unigenes were obtained with concrete annota- tions and 30 unigenes were found to have functions possibly related to the process of reproduction in male crabs – six transcripts relevant to spermatogenesis (especially Cyclin K and RecA homolog DMC1), two transcripts involved in nuclear protein transformation, two heat-shock protein genes, eleven transcription factor genes (a series of zinc-finger proteins), and nine cytoskeleton protein-related genes. Our results, besides providing valuable informa- tion related to crustacean reproduction, can also serve as a base for future studies of reproductive and developmen- tal biology. Key words: reproduction, testis, EST, Eriocheir sinensis. Received: April 16, 2010; Accepted: June 15, 2010. The mitten crab (Eriocheir sinensis) (Henri Milne Edwards, 1854) is one of the most important aquaculture species in China, its culture under facility conditions hav- ing started in the early 1980’s (Li et al., 2007). The annual output has increased during the past decade in China, from 200,000 tons in the year 2000 to 420,000 tons in 2004 (Chen et al., 2007). With the development of intensive cul- ture, various problems have appeared in cultured popula- tions, amongst others, sexual precocity. More and more individual crabs mature when small-sized. After sexual maturation, energy and nutrients are mainly diverted into gonad maturation or reproduction, with little left over for somatic growth, with the consequential devaluation of the commercial product and economic losses. unknown. The initial steps towards an understanding of molecular mechanism of gonad maturation in E. sinensis should be the identification of the respective reproduc- tion-related gonadal transcripts (Klinbunga et al., 2006; Preechaphol et al., 2007). The animal testis is functionally important, both in reproduction and the secretion of hor- mones for growth and developmental regulation. The un- derstanding of the molecular mechanism underlying testis development in the mitten crab is crucial to control testis maturation. Send correspondence to Qun Wang. School of Life Science, East China Normal University, 3663, North Zhong Shan Road, 200062 Shanghai, China. E-mail: qun_300@hotmail.com. *These authors contributed equally to this work. transcriptome analysis of mitten crab testes (Eriocheir sinensis) Wei Zhang1*, Haolei Wan2,3*, Hui Jiang1*, Yunlong Zhao1, Xiaowei Zhang2, Songnian Hu2 and Qun Wang1 1School of Life Science, East China Normal University, Shanghai, China. 2Key Laboratory of Genome Science and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China. 3Graduated University of the Chinese Academy of Sciences, Beijing, China. Genetics and Molecular Biology, 34, 1, 136-141 (2011) Copyright © 2011, Sociedade Brasileira de Genética. Printed in Brazil www.sbg.org.br Short Communication Zhang et al. Zhang et al. 137 were longer than 100 bp, with an average length of 598 bp. Of these (GenBank Accession no. GE339624-GE342613), 882 (29.5%) were clustered into 307 contigs, while 2,108 (70.5%) remained singlets (Table 1). Of the 2,415 unigenes (307 contigs and 2,108 singlets), 922 were annotated by comparison with the NCBI nr and nt database. The remain- ing 1,493 were not definitively identified. Healthy male mitten crabs (100-120 g) in the early stages of reproduction – the period of rapid testis develop- ment – were obtained from a commercial crab farm near Shanghai, China in August. The crabs were placed in an ice-bath for 1-2 min until they were lightly anesthetized. Through dissection, all the testes were collected and imme- diately frozen in liquid nitrogen and stored at 80 °C for fu- ture use. g y By GO comparison of gene expression profiles of mitten crab testis tissue, and based on three functional cate- gories (Figure 1), 455 unigenes of the total 2,415 (38.8%) were categorized. Within the category “Biological pro- cess”, the subcategories “cellular metabolic process”, “pri- mary metabolic process” and “macromolecule metabolic process” contained the highest number of unigenes, fol- lowed by several metabolisms related to testis cell-cycle. Our analyses indicated that mitten crab testis cells are rap- idly growing and undergo active metabolism, consistent with the energy requirements of spermatogenesis. The in- depth analysis of GO results revealed that most cDNA li- brary unigenes were distributed among those subcategories encompassing growth and development and originating from the functional categories of “Molecular function” and “Biological process”; as well as the subcategories “bind- ing”, “catalytic activity”, “biological regulation”, and “de- velopmental process”, all of which representing cell-divi- sion and cell-death. Total RNA was isolated with a Unizol Reagent (Biostar, Shanghai, China) and mRNA purified by using Oligotex mRNA Kits (Qiagen). First-strand and double- strand cDNA were synthesized separately by way of Super- script reverse transcriptase (Invitrogen) and DNA polymer- ase I (Promega). First-strand synthesis was carried out separately with oligo-dT (with XhoI-linker sequence) and random primers (50 M) in equal amounts. In the case of oligo-dT-primed cDNA, the second strand was synthesized and linked to an EcoRI-linker. Products of second-strand synthesis were separated on a 1% agarose gel, and cDNAs longer than 500 bp were isolated and extracted. Size frac- tions of cDNA were then ligated into a pBluescript SK+ vector (Stratagene) using T4 DNA ligase (Promega). Zhang et al. Plasmids were transformed into Escherichia coli (DH10B) cells (Invitrogen), and grown overnight on solid LB me- dium containing IPTG (200 mg/mL) and X-Gal (20 mg/mL). Colony selection was based on blue/white (LacZ) staining. Finally, over 3,000 individual clones were randomly picked from the library and sequenced from the 5’ end by using a T3 universal sequencing primer.The dideoxy-dye-terminator method was used for capillary se- quencing on a 3730 XL system (Applied Biosystems). According to KEGG results, 314 unigenes were as- signed to specific pathways, with 35.2% functioning in ba- sic-metabolism processes, such as specific carbohydrate, energy, amino acid and nucleotide metabolisms. The re- mainder was involved in genetic information processing (36.3%), environmental information processing (8.9%), and cellular processes (15.3%), respectively. Phred analysis (Ewing et al., 1998) was applied for determining DNA bases. Low quality sequences were omitted from further analysis. Cross-match was used to re- move vectors and E. coli DNA sequences from insert sequences, and all sequences shorter than 100 bp were re- moved by way of scripts programmed in Perl language. High-quality ESTs were assembled into contigsusing Phrap software. All the unigenes were compared against the GenBank (NCBI) non-redundant protein (nr) and nucleo- tide (nr/nt) databases through Blastx and Blastn, respec- tively (E-value < 1.010-5). By analyzing all unigenes for their functional characteristics using Gene Ontology (GO) (Harris et al., 2004), we annotated the unigenes by search- ing (Blastx) the updated Universal Protein Resource (Uniprot) database. The sum of unigenes within the subcat- egories of every major category may exceed 100% because some transcripts were classified into more than one subcat- egory in each of the three major categories. Furthermore, all unigenes with particular annotations were matched to the Kyoto Encyclopedia of Genes and Genomes (KEGG) online, in order to forecast their functions and biochemical pathways. In accordance with the purpose of the project, we were particularly interested in discovering transcripts in the reproduction process. According to our annotations, of all the 2,415 unigenes, 30 were found to have significant func- tions during the processes of spermatogenesis and sexual maturity. Based on previously published reports, these uni- genes, comprising 101 ESTs, are identified as being func- tionally involved in these processes in crabs. According to Table 1 - Overview of EST analysis of the testis cDNA library from Eriocheir sinensis. Abstract Consequently, it is essential to discover repro- duction-related transcripts in a testis cDNA library of E. sinensis, in order to reveal the corresponding molecular mechanisms of testis maturation and spermatogenesis. Expressed sequence tag (EST) analysis is a powerful approach for discovering new transcripts and analyzing gene expression profiles in specific tissues or cells (Gieser and Swaroop, 1992; Tassanakajon et al., 2006; Gai et al., 2009; Hou et al., 2010). Such an approach could be of aid in understanding the biological functions of testis tissues at the transcriptome level. The main objectives of the present study were (1) to discover transcripts potentially related to reproduction and development in E. sinensis by construct- ing a testis cDNA library and through EST analysis, and (2) to sequence the library in order to provide useful, pertinent genomic information. Previous studies (Chen et al., 2003; Zhao and Lu, 2003; Li et al., 2005) have revealed two main external fac- tors as leading to sexual precocity in crabs, the environment and food Nevertheless, few scientific investigations have been dedicated to elucidating the internal factors inducing sexual precocity. Furthermore, the regulative mechanisms of gonad maturation in E. sinensis at the molecular level are Zhang et al. Description Number Number of total sequences 3,388 Number of success sequences 2,990 Average length of success sequences (bp) 578 Number of Unigenes 2,415 Number of contigs 307 Number of singlets 2,108 Number of matched genes (%) 922 (38.2%) Number of unmatched genes (%) 1493 (61.8%) Table 1 - Overview of EST analysis of the testis cDNA library from Eriocheir sinensis. 3,388 clones were randomly picked from the library and sequenced from the 5’end. 2,990 high-quality ESTs 138 Transcriptome analysis of crab testes Figure 1 - Functional annotation of unigenes based on known proteins in the Uniprot database. Gene Ontology (GO) terms at the 2nd level were plotted here, and in this ontology, “Biological process”, “Cellular component”, and “Molecular function” are categorized independently. Figure 1 - Functional annotation of unigenes based on known proteins in the Uniprot database. Gene Ontology (GO) terms at the 2nd level were plotted here, and in this ontology, “Biological process”, “Cellular component”, and “Molecular function” are categorized independently. their predicted functions, they were classified into five broad groups (Table 2). eleven unigenes encoding zinc finger proteins were identi- fied. The identification of Zfp37 genes suggests that ZF genes are generally involved in the complex pathways from round spermatids to spermatozoa in mitten crab. Further- more, it is also the first time Zfp37 genes have been found to participate in the processes of spermatogenesis and sex ma- turity in crustaceans (Sepp and Choo, 2005; Cho et al., 2008), although their specific function in sperm develop- ment needs to be further examined. Several transcripts related to spermatogenesis were identified in the library. There was a seminal plasma glyco- protein 120 in the testis cDNA library, the first time such a seminal plasma glycoprotein has been found in mitten crabs. Seminal plasma is a very complex fluid rich in many types of macromolecules involved in fertilization. Seminal plasma glycoprotein 120 may play a key role in mitten crab sperm capacitation. From the testis cDNA library, seven ESTs were annotated as related to ubiquitin. Ubiquitin is a small, highly-conserved regulatory protein, that is ubiqui- tously expressed in eukaryotes, its most prominent function being to label proteins for proteasomal degradation (Cook and Petrucelli, 2009). There were three heat-shock protein genes in the library from E. sinensis, including two heat- shock protein 70 and one heat-shock cognate protein 70. Hsp-70 has the characteristic of regulating initial meiosis. Zhang et al. In mice the Hsc70 gene is activated at the round spermatid stage, and regulated at both the transcriptional and trans- lational levels during spermatogenesis (Matsumoto et al., 1993). A total of nine transcripts were associated with Cytoskeleton Protein, which belong to a cytoskeleton gene family. These are reported to be involved in the spermato- genesis process in mice (Alsheimer and Benavente, 1996). In the library, two unigenes encoding -actin and -tubulin were identified. It has been reported that transcripts of the -actin gene are more abundant in round spermatids than in pachytene spermatocytes, whereas those of the -tubulin gene are widely distributed in testis germ cells, where their abundance influences the occurrence of spermatozoa ab- normality (Hecht et al., 1984). In the testis cDNA library, The unigene annotated to the Histone H1 gene, com- prising 39 ESTs, is one of the most abundantly expressed in the testis. The representative characteristic of the spermato- genesis process is the gradual replacement from histone in somatocytes to testis-specific protein in spermatogonia (Meistrich et al., 1985; Thomas et al., 1989). Therefore, the observation of a highly expressed Histone H1 gene is tgaken to mean that our crabs were in an early phase of sex- ual maturity. Furthermore, four ESTs constructed one Ar- ginine kinase unigene in the testis cDNA library. Arginine kinase is a member of what appears to be a highly con- served family of phosphotransferases that reversibly cata- lyze the transfer of phosphate from phosphoarginine to ADP (Wu et al., 2008). Cyclin K is one kind of cyclin which participates in controlling the cell cycle by binding to Ser/Thr cyclin-dependent kinases, thereby regulating their activities (Yu et al., 2008). The coordination between cell proliferation and differentiation is important in normal development. These processes usually have an antagonistic relationship, in that differentiation is blocked in prolifera- tive cells, and terminally differentiated cells do not divide. In some instances, cyclins, cyclin-dependent kinases and their inhibitors play important roles in this antagonistic reg- 139 Zhang et al. Table 2 - Reproduction-related genes in the testis cDNA library from Eriocheir sinensis. Table 2 - Reproduction-related genes in the testis cDNA library from Eriocheir sinensis. Zhang et al. Annotation Matched species Number of ESTs E-value Spermatogenesis related genes Seminal plasma glycoprotein 120 Danio rerio 1 2.00E-07 Arginine kinase Eriocheir sinensis 4 7.00E-77 Cyclin K Apis mellifera 1 5.00E-45 Ubiquitin Portunus pelagicus 7 2.00E-67 Vasa-like protein Litopenaeus vannamei 1 7.00E-25 RecA homolog DMC1 Pacifastacus leniusculus 3 6.00E-89 Nuclear protein transformation related-genes Histone H1 Mytilus galloprovincialis 39 6.00E-16 Histone H2A-IV Trichomonas vaginalis 1 1.00E-17 Heat shock protein genes Heat shock protein 70 Pachygrapsus marmoratus 2 3.00E-96 Heat-shock cognate protein 70 Bombyx mori 1 2.00E-74 Transcription factor related genes Zinc finger protein Strongylocentrotus purpuratus 1 1.00E-39 Zinc finger protein 160 Xenopus tropicalis 1 1.00E-21 Zinc finger protein 219 Macaca mulatta 1 1.00E-13 Zinc finger protein 33A Macaca mulatta 1 4.00E-08 Zinc finger protein 33B Macaca mulatta 1 3.00E-19 Zinc finger protein 36-like 3 Macaca mulatta 1 3.00E-21 Zinc finger protein 37a Equus caballus 1 6.00E-42 Zinc finger protein 51 Rattus norvegicus 1 6.00E-13 Zinc finger protein 561 Macaca mulatta 1 1.00E-18 Zinc finger protein 658 Canis familiaris 1 1.00E-27 Zinc finger RNA binding protein Apis mellifera 1 3.00E-36 Cytoskeleton protein genes Actin D Litopenaeus vannamei 3 1.00E-126 Beta actin Pacifastacus leniusculus 3 3.00E-71 Cytoplasmic actin A3a1 Homalodisca coagulata 1 4.00E-71 Alpha tubulin a1 Mesenchytraeus solifugus 1 4.00E-75 Alpha-Tubulin at 84B Xenopus laevis 1 3.00E-97 Tubulin beta-1 chain Homarus americanus 3 0 Tubulin beta-2 chain Homarus americanus 3 1E-146 Tubulin alpha-3 chain Homarus americanus 14 1.00E-139 Beta tubulin Phytophthora capsici 1 1.00E-21 homolog DMC1 gene, a specifically expressed gene in mei- osis and involved in spermatogenesis, was also discovered in the testis cDNA library. The protein encoded by this gene is essential for meiotic homologous recombination, and plays an important role in generating diverse genetic infor- mation (Sato et al., 1995; Matsuda et al., 1996). A unique RecA homolog DMC1 may be involved in mitten crab spermatogenesis, by playing catalytic and structural roles in interhomolog recombination during meiosis. In our pro- ject, considerable efforts were made to annotate genes, es- pecially those related to reproduction, thus effectively ulation (Chang et al., 2007; Karagiannis and Balasubra- manian, 2007). A cyclin K transcript, possibly involved in spermatogenesis, was identified in the library, as well as a Vasa-like protein which encodes an RNA helicase protein member of the DEAD-box family and plays a key role in spermatozoa formation, from bacteria to mammals (Ye et al., 2007). References Matsuda Y, Habu T, Hori T and Morita T (1996) Chromosome mapping of the mouse homologue of DMC1, the yeast meio- sis-specific homologous recombination gene. Chromosome Res 4:249-250. Alsheimer M and Benavente R (1996) Change of karyoskeleton during mammalian spermatogenesis: Expression pattern of nuclear lamin C2 and its regulation. Exp Cell Res 228:181- 188. Matsumoto M, Kurata S, Fujimoto H and Hoshi M (1993) Haploid specific activations of protamine 1 and hsc70t genes in mouse spermatogenesis. Biochim Biophys Acta 1174:274- 278. Chang EJ, Begum R, Chait BT and Gaasterland T (2007) Predic- tion of cyclin-dependent kinase phosphorylation substrates. PLoS One 2:e656. Chen D-W, Zhang M and Shrestha S (2007) Compositional char- acteristics and nutritional quality of Chinese mitten crab (Eriocheir sinensis). Food Chem 103:1343-1349. Meistrich ML, Bucci LR, Trostle-Weige PK and Brock WA (1985) Histone variants in rat spermatogonia and primary spermatocytes. Dev Biol 112:230-240. Chen Z, Cheng Y and Wang W (2003) Changes of hepatopancreas index, lipid content and fatty acid composition in Eriocheir sinensis during precocity. J Fish China 27:57-61. Preechaphol R, Leelatanawit R, Sittikankeaw K, Klinbunga S, Khamnamtong B, Puanglarp N and Menasveta P (2007) Ex- pressed sequence tag analysis for identification and charac- terization of sex-related genes in the giant tiger shrimp Penaeus monodon. J Biochem Mol Biol 40:501-510. Cho SY, Chung M, Park M, Park S and Lee YS (2008) ZIFIBI: Prediction of DNA binding sites for zinc finger proteins. Biochem Biophys Res Comm 369:845-848. Cook C and Petrucelli L (2009) A critical evaluation of the ubiquitin-proteasome system in Parkinson’s disease. Bio- chim Biophys Acta 1792:664-675. Sato S, Seki N, Hotta Y and Tabata S (1995) Expression profiles of a human gene identified as a structural homologue of mei- osis-specific recA-like genes. DNA Res 2:183-186. Ewing B, Hillier L, Wendl MC and Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy as- sessment. Genome Res 8:175-185. Sellars MJ, Lyons RE, Grewe PM, Vuocolo T, Leeton L, Coman GJ, Degnan BM and Preston NP (2007) A PL10 vasa-like gene in the kuruma shrimp, Marsupenaeus japonicus, ex- pressed during development and in adult gonad. Mar Biotech 9:377-387. Gai Y, Wang L, Zhao J, Qiu L, Song L, Li L, Mu C, Wang W, Wang M, Zhang Y, et al. (2009) The construction of a cDNA library enriched for immune genes and the analysis of 7535 ESTs from Chinese mitten crab Eriocheir sinensis. Zhang et al. Most DEAD-box proteins are essential for cell viability (Irion and Leptin, 1999). Vasa proteins are involved in gamete production as it is essential to the as- sembly of germ cell cytoplasm in many invertebrate and vertebrate species (Sellars et al., 2007). A unique RecA 140 Transcriptome analysis of crab testes increasing the repertoire of crustacean genes en route of genomic studies. Karagiannis J and Balasubramanian MK (2007) A cyclin-de- pendent kinase that promotes cytokinesis through modulat- ing phosphorylation of the carboxy terminal domain of the RNA Pol II Rpb1p subunit. PLoS One 2:e433. Acknowledgments Klinbunga S, Preechaphol R, Thumrungtanakit S, Leelatanawit R, Aoki T, Jarayabhand P and Menasveta P (2006) Genetic di- versity of the giant tiger shrimp (Penaeus monodon) in Thai- land revealed by PCR-SSCP of polymorphic EST-derived markers. Biochem Genet 44:222-236. This research was supported by grants from the Na- tional Nature Science Foundation of China (No.30671607), the Key Basic Research Project of Science and Technology Commission of the Shanghai Municipal Government (06DJ14003), the Scientific Research Foundation for Re- turned Overseas Chinese Scholars, the State, the Short- term Training Abroad Fund of ECNU, the Award for Doc- toral Candidate Academic Newcomer of ECNU, and the PhD Program Scholarship Fund of ECNU (No.2010042). Li X, Lei Y, Gao X, Ma C and Dong S (2007) Calcium carbonate supersaturation and precipitation in Chinese mitten crab (Eriocheir japonica sinensis) larval ponds in China: Mass mortality, crystal form analysis, and safety saturation index. Aquaculture 272:361-369. Li Y, Kang X, Zhao X, Wen X and LQ H (2005) Intrinsic factors of precocity in mitten-handed crab Eriocheir sinensis. Fish Sci 24:34-36. References Fish Shellfish Immunol 27:684-694. Sepp A and Choo Y (2005) Cell-free selection of zinc finger DNA-binding proteins using in vitro compartmentalization. J Mol Biol 354:212-219. Gieser L and Swaroop A (1992) Expressed sequence tags and chromosomal localization of cDNA clones from a subtrac- ted retinal pigment epithelium library. Genomics 13:873- 876. Tassanakajon A, Klinbunga S, Paunglarp N, Rimphanitchayakit V, Udomkit A, Jitrapakdee S, Sritunyalucksana K, Phongdara A, Pongsomboon S, Supungul P, et al. (2006) Penaeus monodon gene discovery project: The generation of an EST collection and establishment of a database. Gene 384:104-112. Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al. (2004) The Gene Ontology (GO) database and informatics re- source. Nucleic Acids Res 32:D258-D261. Thomas KH, Wilkie TM, Tomashefsky P, Bellve AR and Simon MI (1989) Differential gene expression during mouse sper- matogenesis. Biol Reprod 41:729-739. Hecht NB, Kleene KC, Distel RJ and Silver LM (1984) The differ- ential expression of the actins and tubulins during sper- matogenesis in the mouse. Exp Cell Res 153:275-280. Wu Q-Y, Li F and Wang X-Y (2008) Evidence that amino-acid residues are responsible for substrate synergism of locust arginine kinase. Insect Biochem Mol Biol 38:59-65. Hou X, Mao Q, Zhang W, Jia L and Wang Q (2010) Differentially expressed genes during accessory sex gland seasonal devel- opment in Eriocheir sinensis. J Crust Biol 30:93-100. Ye D, Lv D, Song P, Peng M, Chen Y, Guo M, Yang Q and Hu Y (2007) Cloning and characterization of a rice field eel vasa- like gene cDNA and its expression in gonads during natural sex transformation. Biochem Genet 45:211-224. Irion U and Leptin M (1999) Developmental and cell biological functions of the Drosophila DEAD-box protein abstrakt. Curr Biol 9:1373-1381. 141 Zhang et al. Yu W, Ramakrishnan R, Wang Y, Chiang K, Sung TL and Rice AP (2008) Cyclin T1-dependent genes in activated CD4 T and macrophage cell lines appear enriched in HIV-1 co- factors. PLoS One 3:e3146. Zhao W and Lu J (2003) The relationship between hormone biosynthesis of mandibular organ and precociousness in Eriocheir sinensis. J Fish China 27:289-294. Phrap software, http://www.phrap.org/. Phrap software, http://www.phrap.org/. Phrap software, http://www.phrap.org/. Associate Editor: Klaus Hartfelder Zhao W and Lu J (2003) The relationship between hormone biosynthesis of mandibular organ and precociousness in Eriocheir sinensis. J Fish China 27:289-294. License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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Author Correction: The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation
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Author Correction: The structure of the ubiquitin- like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation Annette Aichem1,2, Samira Anders3, Nicola Catone2, Philip Rößler3, Sophie Stotz3, Andrej Berg 4, Ricarda Schwab1,2, Sophia Scheuermann1,2, Johanna Bialas1,2, Mira C. Schütz-Stoffregen3,5, Gunter Schmidtke1,2, Christine Peter 4, Marcus Groettrup 1,2 & Silke Wiesner 3,5 Annette Aichem1,2, Samira Anders3, Nicola Catone2, Philip Rößler3, Sophie Stotz3, Andrej Berg 4, Ricarda Schwab1,2, Sophia Scheuermann1,2, Johanna Bialas1,2, Mira C. Schütz-Stoffregen3,5, Gunter Schmidtke1,2, Christine Peter 4, Marcus Groettrup 1,2 & Silke Wiesner 3,5 © The Author(s) 2018 1 Division of Immunology, Department of Biology, University of Konstanz, Konstanz D-78457, Germany. 2 Biotechnology Institute Thurgau at the University of Konstanz, Kreuzlingen CH-8280, Switzerland. 3 Max Planck Institute for Developmental Biology, Tübingen D-72076, Germany. 4 Computational and Theoretical Chemistry, Department of Chemistry, University of Konstanz, Konstanz D-78457, Germany. 5 Institute of Biophysics and Physical Biochemistry, University of Regensburg, Regensburg D-93040, Germany. Correspondence and requests for materials should be addressed to M.G. (email: Marcus.Groettrup@uni-konstanz.de) or to S.W. (email: silke.wiesner@ur.de) Correction to: Nature Communication https://doi.org/10.1038/s41467-018-05776-3; published online 20 August 2018 The original version of the Supplementary Information associated with this Article inadvertently omitted Supplementary Table 3. The HTML version of the Article has been updated to include a corrected version of the Supplementary Information. Author Correction: The structure of the ubiquitin- like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation DOI: 10.1038/s41467-018-07183-0 OPEN Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. © The Author(s) 2018 1 Division of Immunology, Department of Biology, University of Konstanz, Konstanz D-78457, Germany. 2 Biotechnology Institute Thurgau at the University of Konstanz, Kreuzlingen CH-8280, Switzerland. 3 Max Planck Institute for Developmental Biology, Tübingen D-72076, Germany. 4 Computational and Theoretical Chemistry, Department of Chemistry, University of Konstanz, Konstanz D-78457, Germany. 5 Institute of Biophysics and Physical Biochemistry, University of Regensburg, Regensburg D-93040, Germany. Correspondence and requests for materials should be addressed to M.G. (email: Marcus.Groettrup@uni-konstanz.de) or to S.W. (email: silke.wiesner@ur.de) 1 NATURE COMMUNICATIONS | (2018) 9:4646 | DOI: 10.1038/s41467-018-07183-0 | www.nature.com/naturecommunications
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Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study
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. CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study 2 Clinical Trial Service Unit & Epidemiological Studies Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK of Oxford, Oxford, UK 3 MRC Population Health Research Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK 3 MRC Population Health Research Unit, Nuffield Department of Population Health, University UK 4 Experimental Research Unit from the Faculty of Medicine (UIME), National Autonomous University of Mexico (UNAM) 5 Oxford Kidney Unit, Churchill Hospital, Oxford, UK 6 Instituto Nacional de Medicina Genómica, Tlalpan, Mexico City, Mexico 7 Centre for Genomics Research, Discovery Sciences, Research and Development Biopharmaceutica Cambridge, UK 9 Department of Biostatistics, University of Michigan, Ann Arbor, USA. Correspondence Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study Andrey Ziyatdinov1*, Jason Torres2,3*†, Jesús Alegre-Díaz4*, Joshua Backman1, Joelle Mbatchou1, Michael Turner2,5, Sheila M. Gaynor1, Tyler Joseph1, Yuxin Zou1, Daren Liu1, Rachel Wade2,3, Jeffrey Staples1, Razvan Panea1, Alex Popov1, Xiaodong Bai1, Suganthi Balasubramanian1, Lukas Habegger1, Rouel Lanche1, Alex Lopez1, Evan Maxwell1, Marcus Jones1, Humberto García-Ortiz6, Raul Ramirez-Reyes4, Rogelio Santacruz-Benítez4, Abhishek Nag7, Katherine R. Smith7, Regeneron Genetics Center, Mark Reppell8, Sebastian Zöllner9, Eric Jorgenson1, William Salerno1, Slavé Petrovski7, John Overton1, Jeffrey Reid1, Timothy Thornton1, Goncalo Abecasis1, Jaime Berumen4, Lorena Orozco-Orozco6, Rory Collins2, Aris Baras1‡, Michael R Hill2,3‡, Jonathan R Emberson2,3‡, Jonathan Marchini1†‡, Pablo Kuri- Morales4‡, Roberto Tapia-Conyer4†‡ * equal first author † corresponding author ‡ equal last author * equal first author † corresponding author ‡ equal last author 1 Regeneron Genetics Center, Tarrytown, NY, USA. 2 Clinical Trial Service Unit & Epidemiological Studies Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK 3 MRC Population Health Research Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK 4 Experimental Research Unit from the Faculty of Medicine (UIME), National Autonomous University of Mexico (UNAM) 5 Oxford Kidney Unit, Churchill Hospital, Oxford, UK 6 Instituto Nacional de Medicina Genómica, Tlalpan, Mexico City, Mexico 7 Centre for Genomics Research, Discovery Sciences, Research and Development Biopharmaceuticals, AstraZeneca, Cambridge, UK 8 AbbVie Inc, North Chicago, Illinois 9 Department of Biostatistics, University of Michigan, Ann Arbor, USA. Correspondence Roberto Tapia-Conyer tapiaconyer@gmail.com Jason Torres jason.torres@ndph.ox.ac.uk Jonathan Marchini jonathan.marchini@regeneron.com 1 Regeneron Genetics Center, Tarrytown, NY, USA. 1 Regeneron Genetics Center, Tarrytown, NY, USA. 2 Clinical Trial Service Unit & Epidemiological Studies Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK 3 MRC Population Health Research Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK 4 Experimental Research Unit from the Faculty of Medicine (UIME), National Autonomous University of Mexico (UNAM) 5 Oxford Kidney Unit, Churchill Hospital, Oxford, UK 6 Instituto Nacional de Medicina Genómica, Tlalpan, Mexico City, Mexico 7 Centre for Genomics Research, Discovery Sciences, Research and Development Biopharmaceuticals, AstraZeneca, Cambridge, UK 8 AbbVie Inc, North Chicago, Illinois 9 Department of Biostatistics, University of Michigan, Ann Arbor, USA. 1 Regeneron Genetics Center, Tarrytown, NY, USA. Correspondence Roberto Tapia-Conyer tapiaconyer@gmail.com Jason Torres jason.torres@ndph.ox.ac.uk Jonathan Marchini jonathan.marchini@regeneron.com . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Abstract The Mexico City Prospective Study (MCPS) is a prospective cohort of over 150,000 adults recruited two decades ago from the urban districts of Coyoacán and Iztapalapa in Mexico City. We generated genotype and exome sequencing data for all individuals, and whole genome sequencing for 10,000 selected individuals. We uncovered high levels of relatedness and substantial heterogeneity in ancestry composition across individuals. Most sequenced individuals had admixed Native American, European and African ancestry, with extensive admixture from indigenous groups in Central, Southern and South Eastern Mexico. Native Mexican segments of the genome had lower levels of coding variation, but an excess of homozygous loss of function variants compared with segments of African and European origin. We estimated population specific allele frequencies at 142 million genomic variants, with an effective sample size of 91,856 for Native Mexico at exome variants, all available via a public browser. Using whole genome sequencing, we developed an imputation reference panel which outperforms existing panels at common variants in individuals with high proportions of Central, South and South Eastern Native Mexican ancestry. Our work illustrates the value of genetic studies in populations with diverse ancestry and provides foundational imputation and allele frequency resources for future genetic studies in Mexico and in the United States where the Hispanic/Latino population is predominantly of Mexican descent. . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Introduction Latin American populations harbor extensive genetic diversity reflecting a complex history of migration throughout the Americas, post-Colonial admixture between continents, and more recent population growth1–3. The distinct patterns of genomic variation that exist in these populations have led to key insights into the genetic architecture of rare and common diseases. Founder populations are prevalent throughout Latin America and analyses of deleterious variants that segregate at higher frequency in these groups have identified clinically-relevant novel variants 4– 9. Moreover, Latin American populations include a significant fraction of Native American indigenous subpopulations that have mostly remained genetically uncharacterized. Admixture between European, Native American and African ancestry groups can result in allele frequency distributions that diverge substantially from ancestral populations. Variants that are rare in one ancestry group but common in another may therefore segregate at a higher frequency in an admixed population, leading to opportunities for novel discoveries in these populations that may be missed when studying single ancestry groups10,11. For example, in one study of Mexican mestizo adults a haplotype in the SLC16A11 locus that is common in Native Americans but rare in Europeans was strongly associated with type 2 diabetes12. In addition to increasing opportunities for variant discovery, genetic analysis of admixed populations can also result in improvements in fine-mapping due to differences in patterns of linkage disequilibrium10,13–15. Unfortunately, despite the numerous opportunities afforded from studying Latin American populations, Hispanic/Latino individuals from such populations comprise less than 1% of all individuals in genetic population research (despite comprising nearly 10% of the global population). By contrast, European populations comprise over 80% of participants in genomic . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint databases but make up less than 20% of people worldwide. Introduction TOPMed imputed version of the cohort. The phased WGS dataset will soon be available as a reference panel through the Michigan Imputation Server (URLs). Introduction Recent initiatives targeting specific populations13,16 or involving large biobanks (such as the Million Veterans Program17,18 and TOPMed (URLs)) have increased the number of Hispanic/Latino individuals included in genetic research, but a sizable gap remains. Additional large genetic studies of Latin American populations are therefore needed to help bridge this gap and enable the implementation of precision medicine in these populations. Between 1998 and 2004, 159,755 participants aged at least 35 years from two contiguous urban districts of Mexico City (Coyoacán and Iztapalapa) were recruited into the Mexico City Prospective Study (MCPS)19. In this study we describe genome-wide array genotyping and whole exome sequencing (WES) on the entire cohort, as well as high-coverage whole genome sequencing (WGS) on a subset of 9,950 participants. We provide a comprehensive genetic profile of the MCPS cohort that reveals complex patterns of relatedness, identity-by-descent (IBD) sharing and runs of homozygosity. By incorporating genotypes from 716 indigenous individuals from 60 of the 68 recognized ethnic groups in Mexico, we apply a range of scalable techniques to finely characterize population structure, continental admixture, and local ancestry in the MCPS cohort. We also provide a survey of variants according to annotation and frequency, with a particular emphasis on genes that exhibit homozygous loss of function variation. Moreover, we estimate ancestry specific allele frequencies from America, Africa and Europe at 142 million variants, a 10- fold increase over existing resources, made available through a public browser (URLs). Lastly, we use the phased WGS dataset as a reference panel to impute genotypes into the full cohort and examine the quality of this imputed dataset compared with the exome sequencing dataset and a . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint TOPMed imputed version of the cohort. The phased WGS dataset will soon be available as a reference panel through the Michigan Imputation Server (URLs). Overview and comparison of genetic datasets addition, we observed more homozygous pLOF variants in MCPS compared with a sample size matched version of the UK Biobank exome dataset (Supplementary Table 4). addition, we observed more homozygous pLOF variants in MCPS compared with a sample size matched version of the UK Biobank exome dataset (Supplementary Table 4). A subset of 9,950 MCPS individuals were also whole genome sequenced, with mean depth of 38.5X. After filtering we identified 131.9 million variants in total, of which 1.5 million were coding variants (Supplementary Table 5-6, Methods). 96.2% of the variants were rare variants with MAF < 1%. There were 31.5 million unique WGS variants when compared to variants discovered by the TOPMed 16 and gnomAD 21 WGS datasets (Supplementary Table 7). We compared the WGS and WES in the overlapping set of 9,950 individuals to examine the amount of coding variation called. Both datasets utilized the same calling and annotation framework but used dataset specific machine learning models and hard filters to QC variants. We found that the WGS dataset led to a 2.3% absolute increase in the amount of coding variation when using the canonical gene transcript to annotate variants (Table 2), with 93.2%, 4.5% and 2.3% of the union set of sites being called in both datasets, WGS-only and WES-only respectively (Supplementary Table 8). When variants were annotated by the most deleterious consequence across all transcripts of a gene, then WGS had 4.6% more coding variants (Supplementary Table 9), with 91.1%, 6.6% and 2.3% of the union set of sites being called in both datasets, WGS-only and WES-only respectively (Supplementary Table 10). When restricted to exome sequencing capture regions only, the differences between WGS and WES were much smaller (Supplementary Tables 11-14). Supplementary Tables 15-18 compare WGS and WES for variants with alternative allele frequency <1%. The variant sets unique to WGS and WES have similar overlap to TOPMed and gnomAD site lists (Supplementary We compared the WGS and WES in the overlapping set of 9,950 individuals to examine the amount of coding variation called. Both datasets utilized the same calling and annotation framework but used dataset specific machine learning models and hard filters to QC variants. We found that the WGS dataset led to a 2.3% absolute increase in the amount of coding variation when using the canonical gene transcript to annotate variants (Table 2), with 93.2%, 4.5% and 2.3% of the union set of sites being called in both datasets, WGS-only and WES-only (Supplementary Table 9), with 91.1%, 6.6% and 2.3% of the union set of sites being called in both datasets, WGS-only and WES-only respectively (Supplementary Table 10). Overview and comparison of genetic datasets Of the 159,755 MCPS participants, a blood sample was successfully taken, processed and stored for 155,453 (97.3%). Of these, DNA was successfully extracted for 146,068 (94.0%) and sent for genotyping and exome sequencing. After initial QC procedures (see Methods) genotyping array data was available for 138,511 participants and exome data was available for 141,046. (Supplementary Table 1 provides key baseline characteristics of the 141,046 participants with exome data.) The exomes were sequenced with 98.7% of the samples having 90% of the targeted bases covered at 20X or higher. After applying machine-learning methods to filter out low- quality variants, we identified a total of 9.3 million variants including 4.0 million variants across the coding regions of 19,110 genes. 98.7% of the coding variants were rare (minor allele frequency (MAF) < 1%) (Table 1, Supplementary Table 2, Methods) and 1.4 million were unique to MCPS when compared with variants discovered by the UK Biobank (UKB) Exome sequencing study20, TOPMed 16 and gnomAD 21 (Supplementary Table 3). Among the coding variants identified were 1,233,054 (median of 14,900 alleles per individual) synonymous, 2,526,776 (13,585 alleles per individual) missense and 233,650 (354 alleles per individual) putative loss-of-function (pLOF) variants (Table 1). The proportion of singletons (30.9%) was much lower than observed in other datasets (e.g., 46.8% in UK Biobank Exomes20) due to the way in which households of participants in close neighborhoods were recruited. As expected, the proportion of singletons increased to 36.5% when we restricted to individuals related less than 1st degree, and further to 39.2% when we restricted to individuals related less than 3rd-degree. In . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint addition, we observed more homozygous pLOF variants in MCPS compared with a sample size matched version of the UK Biobank exome dataset (Supplementary Table 4). (Supplementary Table 23). A total of 138,511 MCPS individuals were genotyped on the Illumina GSA v2 beadchip and passed quality control (Methods, Supplementary Table 24). Array genotypes were highly concordant with WGS and WES genotypes in overlapping samples (mean biallelic SNP discordance of 0.03% for both datasets) (Supplementary Table 23). addition, we observed more homozygous pLOF variants in MCPS compared with a sample size matched version of the UK Biobank exome dataset (Supplementary Table 4). When restricted to exome sequencing capture regions only, the differences between WGS and WES were much smaller (Supplementary Tables 11-14). Supplementary Tables 15-18 compare WGS and WES for variants with alternative allele frequency <1%. The variant sets unique to WGS and WES have similar overlap to TOPMed and gnomAD site lists (Supplementary . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Tables 19-22). Concordance of genotype calls between WGS and WES datasets in 9,950 overlapping samples was very high with a mean biallelic SNP discordance of 0.0064% (Supplementary Table 23). Relatedness The genetic data allowed us to investigate familial relatedness within the cohort which was expected to be high due to the household recruitment strategy. Accounting for relatedness is essential for validity of GWAS22 and epidemiological studies23 and can be leveraged in heritability estimation to reduce bias of shared environmental effects24. We characterized familial relatedness using the quality control filtered genotyping array dataset (Methods). We used shared identical-by-descent (IBD) segments to infer relatedness to avoid estimation biases in samples from admixed populations that can occur when using methods based on population allele frequency estimates 25. We applied KING software26 to unphased data, and the hap-IBD27 and IBDkin28 methods to a phased array dataset (Methods). Both unphased and phased approaches produced comparable results (Supplementary Figure 1). Figure 1a and Supplementary Figure 2 illustrate the extensive relatedness identified in MCPS. There are 31,597 parent-offspring, 29,482 full sibling, 47,080 second-degree relative, and 120,180 third-degree relative pairs. A small proportion (0.05%) of parent-offspring pairs had . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint genotypes at a small number of loci that were inconsistent with this type of relationship, resulting in elevated estimates of sharing 0 alleles IBD. We determined genotyping error to be the most likely cause of this phenomenon as opposed to uniparental disomy. Close to 71% (97,953 individuals) in MCPS have at least one relative in the study that is third-degree or closer and many of the MCPS participants have multiple close relatives (Figure 1b). The largest connected component in a graph of individuals with third-degree relationships or closer involves 22% of the cohort (30,682 individuals) (Supplementary Figure 3). These levels of relatedness are much higher than those observed in the UK Biobank1, but are comparable to the Geisinger Health Study29 (both MCPS and the Geisinger Health Study recruited participants from regions with families living in close proximity) (Supplementary Table 25). Relatedness We used PRIMUS30 to reconstruct 22,766 first-degree family networks containing a total of 65,777 individuals with a median size of 2.9, up to a maximum size of 48 people, including 3,595 nuclear families genotypes at a small number of loci that were inconsistent with this type of relationship, resulting in elevated estimates of sharing 0 alleles IBD. We determined genotyping error to be the most likely cause of this phenomenon as opposed to uniparental disomy. Close to 71% (97,953 individuals) in MCPS have at least one relative in the study that is third-degree or closer and many of the MCPS participants have multiple close relatives (Figure 1b). The largest connected component in a graph of individuals with third-degree relationships or closer involves 22% of the cohort (30,682 individuals) (Supplementary Figure 3). These levels of relatedness are much higher than those observed in the UK Biobank1, but are comparable to the Geisinger Health Study29 (both MCPS and the Geisinger Health Study recruited participants from regions with families living in close proximity) (Supplementary Table 25). We used PRIMUS30 to reconstruct 22,766 first-degree family networks containing a total of 65,777 individuals with a median size of 2.9, up to a maximum size of 48 people, including 3,595 nuclear families (Supplementary Figure 4, Supplementary Table 26). A graph of 14,428 individuals with second-degree family networks of size greater than four highlights the complexity of the patterns of relatedness, as well as partial clustering of relationships within districts of Coyoacán and Iztapalapa (Supplementary Figure 5). The largest connected component in this graph contains 9,180 individuals. We also investigated relationships within and across the two districts (see Supplementary Table 27). With reconstruction of pedigree networks in MCPS, we were able to investigate the proportion of relatives who cross boundaries and have residences in different districts. Among the first-degree relatives, we find that only 3% of parent-child pairs and 7% of full sibling pairs lived in different districts. The percentages of second- and third-degree relative pairs with residences in different districts was 13% and 17%, respectively, which is much lower than would be expected if there was random mixing of individuals from the contiguous districts. . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Interestingly, although there was a marked 10% to 15% decrease in the percentages of second- or third-degree relative pairs who both had a residence in the Coyoacán district compared with first- degree relationship types, the percentages of relative pairs who had a residence in the Iztapalapa district remained fairly consistent across relationship types (Supplementary Table 27). These results provide some insight into patterns of migration (or lack thereof) within families between the Coyoacán and Iztapalapa districts. Interestingly, although there was a marked 10% to 15% decrease in the percentages of second- or third-degree relative pairs who both had a residence in the Coyoacán district compared with first- degree relationship types, the percentages of relative pairs who had a residence in the Iztapalapa district remained fairly consistent across relationship types (Supplementary Table 27). These results provide some insight into patterns of migration (or lack thereof) within families between the Coyoacán and Iztapalapa districts. Population structure The genetic dataset allowed us to characterize the ancestry composition and heterogeneity of MCPS individuals relative to pre-Columbian population structure in Mexico. Accounting for genetic ancestry and admixture is crucial in GWAS31 and can be used to boost power32 and for explorations of polygenic risk scores portability33. We used a variety of complementary analysis approaches to investigate the fine-scale population structure in the MCPS dataset, with a specific emphasis on elucidating the Native American component of genetic ancestry. Firstly, we applied PCA to a reference dataset of 108 African (Yoruba) and 107 European (Iberian) samples from the 1000 Genomes (1000G) dataset34, and 591 unrelated samples from 60 Native Mexican groups corresponding to Central, Southern, South Eastern, Northern and North Western regions of Mexico from the Metabolic Analysis of an Indigenous Sample (MAIS)2 (see Methods, Figure 2, Supplementary Figure 6). We included a representative set of unrelated MCPS samples (n=500) in the PCA model fitting procedure and projected the remaining 138,011 MCPS samples onto the inferred PC axes. Figure 2a shows that PC1 and PC2 separate Native Mexican, African and European samples, and that MCPS samples lie on the axis between Native Mexican and European samples. Figure 2b shows that PC3 differentiates Native Mexican geographic sub- . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint groups and suggests that the majority of MCPS samples have ancestry from Central, Southern and South Eastern Mexico. groups and suggests that the majority of MCPS samples have ancestry from Central, Southern and South Eastern Mexico. groups and suggests that the majority of MCPS samples have ancestry from Central, Southern and South Eastern Mexico. To provide more focus on the genetic variation within the MCPS dataset we also applied PCA to a filtered array dataset of 58,051 unrelated MCPS samples, with all other MCPS samples and 1000G, HGDP and MAIS samples projected onto the inferred PC axes (Figure 2c,d, Supplementary Figure 7). This analysis further highlighted that Mesoamerican ancestry from indigenous groups in Central, Southern and South Eastern Mexico predominates, whereas ancestry from indigenous groups in the Northern and more arid regions of the country is sparsely represented in MCPS. Examination of the SNP loadings from this PCA analysis highlighted that many PCs exhibited local effects attributable to long-range LD consistent with recent admixture. More stringent LD filtering reduces this phenomenon and suggests that analysis of large scale admixed datasets requires careful selection of PCs used in GWAS (Supplementary Figures 8-10). Parametric admixture estimation also corroborated significant ancestry proportions from Mesoamerican ancestry groups among MCPS participants (Supplementary Figure 11, Methods). While PCA aims to uncover population structure in a dataset using a set of mostly unlinked markers, haplotype-based approaches that can utilize linkage disequilibrium (LD) between SNPs have been shown to uncover much finer scale population structure 35,36. We applied two different methods to measure the similarity between pairs of individuals using phased array haplotypes from a set of unrelated MCPS individuals. The first approach used identical-by-descent (IBD) . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint segments27, and the second approach measured the extent of haplotype sharing using a scalable implementation of a haplotype-copying hidden Markov model37 (Methods). Both of these approaches produced low-dimensional representations with noticeably more ‘star-like’ structure than PCA (Supplementary Figures 12-13). In combination with ancestry proportions from the local ancestry inference (see next section), this highlighted the ability of these approaches to delineate the contributions of Mesoamerican and European ancestry more clearly. Local ancestry estimation We carried out a supervised population structure analysis by applying local ancestry inference (LAI) with RFMix38 using a reference panel of haplotypes from Africa, Europe and America (Methods). Supplementary Figure 14 shows local ancestry at segments genome-wide for 12 representative MCPS individuals estimated from the LAI results and Figure 3 shows population distributions of LAI-based ancestry proportion estimates, including five indigenous sub-groups within Mexico. Overall, we estimate that 66.0% of autosomal ancestry was attributable to Native Mexican groups with the majority coming from Central Mexico (35.6%). Southern Mexico and South Eastern Mexico accounted for 15.9% and 11.8% respectively, with much smaller amounts of ancestry attributable to Northern Mexico (1.6%) and North Western Mexico (1.1%). In addition, 2.9% and 31.1% of ancestry was attributable to African and European groups respectively. We observed that MCPS individuals with the most Native Mexican ancestry seem to have a greater relative contribution from indigenous groups from Southern Mexico (i.e. from the states of Oaxaca and Veracruz) (Supplementary Figure 15). We also find lower amounts of Native Mexican ancestry and higher amounts of European ancestry in Coyoacán than in . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Iztapalapa, consistent with socio-demographic characteristics of these districts (Supplementary Using 3,595 parent couples inferred from the genetic relatedness analysis we observed significant correlation in ancestry between partner pairs (Supplementary Figure 16) as has been observed in other admixed studies39–41. We used a linear model to predict ancestry of each partner using the ancestry of their spouse, education level (4 categories) and district (Coyoacán and Iztapalapa) of both partners. We found that education and district explained between 0.5-5% of the variation in ancestry, whereas spousal ancestry explained between 15-26% of the variation in ancestry. This suggests that genomic ancestry is a much better predictor of partners’ ancestry than these sociodemographic factors. Supplementary Figure 17 shows the proportion of ancestry across each chromosome from a 3- way LAI analysis (Methods). This highlighted an excess of African ancestry in and around the MHC on chromosome 6 (African 17.3%, P-value = 2.9e-14; Supplementary Figure 18) Supplementary Figure 17 shows the proportion of ancestry across each chromosome from a 3- way LAI analysis (Methods). This highlighted an excess of African ancestry in and around the MHC on chromosome 6 (African 17.3%, P-value = 2.9e-14; Supplementary Figure 18) consistent with previous observations42. We also observed ancestry proportions on chromosome X that exhibited elevated levels of Native Mexican ancestry compared to autosomes (African 3.2%, Native Mexican 73.8%, European 22.7%), consistent with an imbalance of male and female contributions to admixture. Using a simplified population mixture event model43,44 that best fits the observed chromosome X ancestry proportions we estimate that the proportion of Native Mexican ancestry explained by female contribution was 71.3%, while for Europeans the female contribution accounted for 7.5%. (Supplementary Table 28). . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Homozygosity We observed that 68.4% of ROH segments are homozygous for a single ancestry across their whole length. These results are consistent with previous reports that Native American populations tend to have higher levels of homozygosity than European and African populations 45. The mean number of rare homozygous pLOFs (rhLOF), and the proportion of rhLOFs in ROH was correlated with the proportion of the genome in ROH segments (Supplementary Figure 21). Overall, for LOF variants with allele frequency <0.1% we identified 3,763 rhLOF genotypes at 2,646 variants in 2,169 different protein-coding genes in 3,519 individuals, and 52.2% of these were found within ROH segments (recall that, overall, <0.5% of these genomes lies in ROH segments). Given the rate of rhLOF variants in MCPS (Supplementary Table 4), we investigated the local ancestry assignment for each observed rhLOF within ROH and observed that segments of Native Mexican ancestry account for 62.6% of rhLOFs (Supplementary Table 30). Homozygosity The relatedness analysis highlighted a subset of parent-offspring pairs with elevated levels of sharing two alleles IBD (Figure 1a), which can be caused by extensive homozygosity within a population. The exome variant survey highlighted an increased amount of homozygous pLoF variants compared to the UK Biobank exome dataset (Supplementary Table 4). Homozygosity, particularly at pLoF variants, can be especially useful in understanding gene function, drug discovery, and for call back studies45. Population bottlenecks and consanguinity can increase homozygosity, whereas admixture can decrease homozygosity within a population. We estimated levels of homozygosity in each MCPS individual by estimating runs of homozygosity (ROH) from the phased array dataset using hap-IBD27 (Methods). There were 60,722 MCPS participants (43.9%) who had at least one ROH segment of length 4 centimorgans (cM) or longer. The mean homozygosity across the whole dataset was 0.34%, and 0.78% among the 60,722 individuals with at least one ROH segment greater than or equal to 4 cM (Supplementary Tables 29, Supplementary Figure 19). As a comparison, we ran the same analysis on the UK Biobank phased array genotypes and found the mean homozygosity was 0.07%, and 0.59% in the 55,206 (11.3%) of the participants with at least one ROH segment. We observed that the total amount and number of ROH segments was positively correlated with the proportion of ancestry that is native to Mexico (Supplementary Figure 20). Combining ROH segments with local ancestry estimates (Methods) we found that 79.0% of ROH segments can be assigned to Native Mexican ancestry, clearly exceeding the 66.3% average amount of Native Mexican ancestry in the sample. Similarly, we observed a depleted proportion of ROH in European and African segments (19.10% and 1.9% respectively) compared to the average . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint amount of European and African ancestry in the sample (30.2% and 3.5% respectively). An MCPS imputation reference panel We created a phased haplotype reference panel (MCPS10k) for the purposes of genotype imputation that is being made available via the Michigan Imputation Server (see URLs). The phasing process utilized phase information from sequencing reads and pedigrees, and WGS variants were phased onto an array haplotype scaffold to facilitate ancestry specific allele frequency estimation (Methods). Using the WGS trios we estimate that haplotypes were phased with a switch error rate of 0.0024 (Methods, Supplementary Figure 22) and we observed that switch error rate depended upon ancestry proportion (Supplementary Figure 23). . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint We assessed the utility of the MCPS10k reference panel for genotype imputation by imputing chromosome 2 using the phased array dataset of 67,079 MCPS individuals not included in the reference panel and pruned for relationships up to the first degree. For comparison, we also imputed the MCPS dataset using the diverse TOPMed reference panel that includes 47,159 European, 24,267 African, and 17,085 admixed American genomes (Methods). MCPS10k and TOPMed imputation produced, respectively, a set of 9,801,290 and 9,437,266 autosomal variants with imputation info score >0.3. However, the information scores (a well calibrated measure of accuracy) for an overlapping set of 6,473,872 variants were generally higher using MCPS10k than TOPMed for MAF bins greater than 0.01% (Supplementary Figure 24). We compared the MCPS10k and TOPMed imputed genotypes to the exome sequencing data at 128,745 sites on chromosome 2. Figure 4 shows the results of the imputation accuracy stratified by allele frequency, reference panel and degree of Native Mexican ancestry (defined as two groupings with individuals split above and below the median proportion of Native Mexican ancestry). The results show that MCPS10k outperformed TOPMed for MAF > 0.1%, but below that threshold the TOPMed panel had better performance. An MCPS imputation reference panel Furthermore, we find that the MCPS10k panel provided the greatest imputation benefits for those samples with the highest proportions of Native Mexican ancestry. Finally, we assessed the imputation performance in 1000 Genomes individuals with Mexican ancestry from Los Angeles (MXL) and found that TOPMed provided improved imputation . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint performance compared to MCPS10k (Supplementary Figure 25-26). Our ADMIXTURE analysis of the MXL samples suggests that they have substantially higher European ancestry than MCPS samples (median 44% versus 28%). In addition, the MXL samples have less ancestry from Central, South and South East Mexico, and more from North and North West Mexico than MCPS (Supplementary Figure 27). Previous studies46 have suggested that Mexican-Americans from California tend to have increased Native American ancestry from Northwest Mexico as compared to individuals from Mexico City. The limited ancestry from North and North Western Mexico in MCPS and the large number of European reference samples in TOPMed likely explains why the MCPS10k panel does not provide the best imputation accuracy in the MXL samples. Similarly, the TOPMed panel provided the best performance in 1000 Genomes individuals with Peruvian ancestry from Lima (PEL), Colombian ancestry from Medellin (CLM) and Puerto Rican ancestry from Puerto Rico (PUR) compared to MCPS10k (Supplementary Figure 25-26). These results emphasize the value of closely matching the ancestry of imputation reference panels to the samples being studied. While our panel provides improved imputation for individuals of Mesoamerican Mexican ancestry, additional panels may be required to provide similar benefits for other Latin American populations with admixture from different Native American ancestral populations. Ancestry specific allele frequency estimation We combined the LAI results with the phased WES and WGS datasets to estimate Native Mexican, African and European allele frequencies at 141,802,412 genetic variants, increasing by 10-fold the number of LAI-resolved frequencies currently available in the gnomAD browser (see schematic in Supplementary Figure 28). These frequencies are available in a public browser . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint (see URLs). Median sample sizes for estimation of Native Mexican, African and European ancestry were 91,856, 4,312 and 42,009 respectively for WES variants, and 6,549, 341 and 3,058 for WGS variants. For comparison, gnomAD v3.1 median sample sizes are 7,639, 20,719 and 34,014 for Latino/Admixed American, African and Non-Finnish European ancestries. Figure 5 compares WES allele frequency estimates using our deconvolution approach in MCPS to the more direct approach used in gnomAD v3.1. European allele frequencies showed excellent agreement (r2 = 0.994) and African allele frequencies only showed slightly less agreement (r2 = 0.987), despite greater heterogeneity in African ancestry populations and the lower median African sample size in the MCPS cohort. Supplementary Figure 29 compares MCPS WGS and gnomAD allele frequencies. Table 3 shows the allele frequencies at 46 loci previously reported to show trait associations in contemporary Mexican or other Latin American populations. For example, we found that the top SNP associated with type 2 diabetes at the SLC16A11 locus12 - rs75493593 - has an overall frequency of 36% but population-specific allele frequencies of 0.1%, 0.7% and 53% in African, European and Native Mexican populations, respectively. This is in agreement with previous estimates reported by the SIGMA Type 2 Diabetes Consortium. Ancestry specific allele frequency estimation Another notable example occurs at the IGF2 locus where the pLOF splice acceptor variant rs149483638 that confers protection against type 2 diabetes47 and has an overall frequency of 23% but population-specific allele frequencies of 0.06%, 0.05% and 35% in African, European and Native Mexican populations, respectively. Moreover, the rare MC4R missense variant rs79783591 associated with obesity48 is absent from the gnomAD browser but has an overall frequency of 1.1% in MCPS with an . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint inferred Native Mexican frequency of 1.6%, and African and European frequencies less than 0.05%. inferred Native Mexican frequency of 1.6%, and African and European frequencies less than 0.05%. We used the 3-way LAI segments to further decompose the annotated variants into three continental groups and found that across all variant classes the highest levels of variation were found in African segments and lower levels in Native Mexican and European segments, We used the 3-way LAI segments to further decompose the annotated variants into three continental groups and found that across all variant classes the highest levels of variation were found in African segments and lower levels in Native Mexican and European segments, consistent with the demographic history of these populations (Supplementary Table 31). For example, we estimate that the mean number of pLOF variants in Native Mexican, European and African genomes to be 347, 361 and 427 respectively, although rare homozygous pLOF were more frequent among longer ROHs of Native American ancestry as shown above. Discussion The MCPS genetic data resources described in this study represent the largest in Mexico to date, the most extensive sequencing study in individuals of non-European ancestry, and a major contribution towards the goal of increasing the diversity of genetic collections. Through scalable genotype and haplotype-based approaches to characterize fine-scale population structure and admixture, we traced the Native American component of ancestry within MCPS individuals to predominantly Mesoamerican indigenous groups from Central, Southern and South Eastern Mexico. Many indigenous groups within Southern Mexico belong to the Oto-mangue linguistic family (e.g. Mixteco, Zapoteco, Ixcateco) whereas most indigenous groups from South Eastern Mexico belong to the Maya linguistic family (Maya, Chuj, Ixil, Awakateco). Genetic analyses of indigenous groups in Mexico have previously shown that indigenous groups in these regions . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint share extensive genetic similarly that closely aligns with linguistic family membership2. On the other hand, indigenous groups in the Central region of Mexico (e.g. Otomi, Nahuatl) show pronounced genetic similarity (i.e. low measures of pairwise Fst) despite spanning distinct linguistic families (e.g. Oto-mangue, Yuto-nahua, Totonaco-tepehua). Our analyses revealed that Mesoamerican ancestry from these three regions was prevalent within the MCPS cohort, with particularly elevated relative proportions of South Eastern ancestry among individuals with the most Native American admixture in-keeping with the more restrictive mating patterns seen in South Eastern Mexican peoples previously 49. In contrast, ancestry from Aridoamerican indigenous groups in the Northernmost regions of the country and from Mesoamerican groups in the Northwest state of Nayarit (Cora, Tepehuano, Mexicanero, and Huichol) was underrepresented in MCPS. Moreover, as seen in previous studies in Mexico 2,46, we found evidence of sex imbalance on the X chromosome. Discussion The higher proportion of Mesoamerican ancestry on chromosome X is consistent with sex-biased gene flow resulting from predominantly-male European colonization of the Americas50 and may have implications for health disparities between men and women in light of the longer runs of homozygosity, and more rare pLOF variants, that tracked with Mesoamerican ancestry. Such health disparities may also be compounded by the assortative mating observed in MCPS, which has been well-documented elsewhere51,52. Furthermore, IBD-based analyses revealed extensive and complex patterns of relatedness between participants within Coyoacán and Iztapalapa, largely reflecting the household-based recruitment strategy of the study. Together our analyses have uncovered an exceptionally complex and unique combination of admixture and relatedness within MCPS. share extensive genetic similarly that closely aligns with linguistic family membership2. On the other hand, indigenous groups in the Central region of Mexico (e.g. Otomi, Nahuatl) show pronounced genetic similarity (i.e. low measures of pairwise Fst) despite spanning distinct linguistic families (e.g. Oto-mangue, Yuto-nahua, Totonaco-tepehua). Our analyses revealed that Mesoamerican ancestry from these three regions was prevalent within the MCPS cohort, with particularly elevated relative proportions of South Eastern ancestry among individuals with the most Native American admixture in-keeping with the more restrictive mating patterns seen in South Eastern Mexican peoples previously 49. In contrast, ancestry from Aridoamerican indigenous groups in the Northernmost regions of the country and from Mesoamerican groups in the Northwest state of Nayarit (Cora, Tepehuano, Mexicanero, and Huichol) was underrepresented in MCPS. Moreover, as seen in previous studies in Mexico 2,46, we found evidence of sex imbalance on the X chromosome. The higher proportion of Mesoamerican ancestry on chromosome X is consistent with sex-biased gene flow resulting from predominantly-male European colonization of the Americas50 and may have implications for health disparities between men and women in light of the longer runs of homozygosity, and more rare pLOF variants, that tracked with Mesoamerican ancestry. Such health disparities may also be compounded by the assortative mating observed in MCPS, which has been well-documented elsewhere51,52. Furthermore, IBD-based analyses revealed extensive and complex patterns of relatedness between participants within Coyoacán and Iztapalapa, largely reflecting the household-based recruitment strategy of the study. Together our analyses have uncovered an exceptionally complex and unique combination of admixture and relatedness within MCPS. . Discussion CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint We developed a novel approach for estimating population-specific allele frequencies that leverages local ancestry information and interpolated ancestry at called variants in the MCPS WES and WGS datasets. This dramatically increased (by10-fold) both the number of variants with ancestry-specific allele frequencies and the Native Mexican effective sample size used for estimating allele frequencies from WES data. Without a suitable reference dataset of population specific allele frequencies, efforts to diagnose and interpret genomic variants in the context of rare disorders are greatly encumbered as it is difficult to distinguish previously unreported or undersampled population specific variants from potentially pathogenic variants. Our study expands the availability of such allelic information, which is made accessible to the genomics research community via the MCPS Variant Browser to facilitate future discoveries. The MCPS WES and WGS datasets substantially add to the global survey of characterized genomic variants by over 31 million variants. Additionally, we uncover elevated levels of homozygosity and homozygous pLOF variants attributable to Native Mexican ancestry, homozygosity and homozygous pLOF variants attributable to Native Mexican ancestry, suggesting a role for future studies of admixed Mexicans as a previously untapped resource for the study of homozygous loss of function alleles in humans. Comparing WGS and WES datasets in the same set of 9,950 samples we found that the WGS dataset led to a 2.3% absolute increase in the amount of coding variation when using the canonical gene transcript to annotate variants. Further quantitative comparisons in larger datasets such as UK Biobank will be needed to examine the overall utility of WGS over WES and imputation for novel causal variant discovery. The MCPS10k imputation reference panel is being made available via the Michigan Imputation Server for use in other studies. From our investigations we found that imputation accuracy with . Discussion CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint MCPS10k was superior to the TOPMed reference panel at genetic variants with MAF>0.1%, while TOPMed outperformed MCPS10k for the imputation of extremely rare variants in MCPS. We also found that MCPS10K provided the highest imputation accuracy for those individuals with high proportions of Mesoamerican ancestry. In theory, a combination of the MCPS10k and TOPMed reference panels should result in superior imputation performance than using either reference panel alone. There are, however, significant challenges in bringing together large WGS datasets across studies for imputation, motivating the need for novel approaches that can combine imputation results from different panels. The results from our study highlight the need for large diverse WGS datasets from many different populations and the potential for a single world-wide-reference panel to increase representation and parity in imputation accuracy across ancestries. The publicly-available MCPS genetic resources, particularly the allele frequency and imputation databases, will contribute to future studies and serve as a major resource for understanding the genetic basis of diseases across Mexico as well as in the United States where there is a large population of individuals of Mexican descent. In addition, our study can serve as a blueprint for obtaining novel insight into the complex genetic architecture of other diverse populations. The utility of the MCPS genetic resource has recently been demonstrated through its contribution to the discovery of loss of function variation in GPR75 that is protective against obesity, which was bolstered by the inclusion of the MCPS cohort in the exome-wide association meta-analysis 48. Moreover, the analysis of MCPS exomes was instrumental in estimating that MC4R heterozygous deficiency is more than seven times greater in Mexico than in the UK48. Future studies will link genetic variation to other disease traits via cross-cohort meta-analysis, increase resolution of fine- . Discussion CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint mapping, explore the construction and portability of polygenic risk scores in the Mexican population, leverage admixture, relatedness, and household information to potentially boost power of discovery in association studies and utilize Mendelian randomization to uncover causal relationships between modifiable exposures and disease. . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Methods It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Samples showing disagreement between genetically-determined and reported sex (n=1,027), high rates of heterozygosity/contamination (VBID > 5%) (n=249), low sequence coverage (less than 80% of targeted bases achieving 20X coverage) (n=29), or genetically-identified sample duplicates (n=1,062 total samples), and WES variants discordant with genotyping chip (n=8) were excluded. In addition, n=1,339 samples were flagged by MCPS for exclusion. In total, 2,394 unique samples did not pass one or more of our QC metrics. The remaining 141,046 samples were then used to compile a project-level VCF (PVCF) for downstream analysis, using the GLnexus joint genotyping tool. This final dataset contained 9,950,580 variants. Whole genome sample preparation and sequencing and quality control. Approximately 250ng of total DNA was enzymatically sheared to a mean fragment size of 350 base pairs. Following ligation of a Y-shaped adapter unique, asymmetric 10 base pair barcodes were added to the DNA fragments with three cycles of PCR. Libraries were quantified by qPCR, pooled, and then sequenced using 150 base pair paired-end reads with two 10 base pair index reads on the Illumina NovaSeq 6000 platform on S4 flow cells. A total of 10,008 samples were sequenced. This included 200 mother-father-child trios and three more extended pedigrees. The rest of the samples were chosen to be unrelated to third-degree or closer, and enriched for parents of nuclear families. The average mean coverage was 38.5X and 99% of samples have mean coverages > 30X, and all samples are above 27X. Samples showing disagreement between genetically-determined and reported sex (n=16), high rates of heterozygosity/contamination (VBID > 5%) (n=10), or genetically-identified sample duplicates (n=19 total samples) were excluded. In addition, n=34 samples were flagged by MCPS for exclusion. In total, 58 unique samples did not pass one or more of our QC metrics. The remaining 9,950 samples were then used to compile a project-level VCF (PVCF) for downstream analysis, using the GLnexus joint genotyping tool. This final dataset contained 158,464,363 variants. Variant calling. Methods Blood sample collection, processing and storage, and DNA extraction. Blood sample collection, processing and storage, and DNA extraction. At recruitment, a 10-ml venous EDTA blood sample was obtained from each participant and transferred to a central laboratory using a transport box chilled (4 to 10°C) with ice packs. Samples were refrigerated overnight at 4°C, and then centrifuged (2100g at 4°C for 15 min) and separated the next morning. Plasma and buffy-coat samples were stored locally at −80°C, then transported on dry ice to Oxford (United Kingdom) for long-term storage over liquid nitrogen. DNA was extracted from buffy coat at the UK Biocentre using Perkin Elmer Chemagic 360 systems and suspended in TE buffer. UV-VIS spectroscopy using Trinean DropSense96 was used to determine yield and quality and samples were normalised to provide 2μg DNA at 20ng/μL concentration (2% of samples provided a minimum 1.5ug DNA at 10ng/uL concentration) with 260:280nm ratio of >1.8 and a 260:230nm ratio of 2.0-2.2. Exome sample preparation and sequencing and quality control. Genomic DNA samples were transferred to the Regeneron Genetics Center from the UK Biocentre and stored in an automated sample biobank at -80°C prior to sample preparation. DNA libraries were created by enzymatically shearing DNA to a mean fragment size of 200 base pairs, and a common Y-shaped adapter was ligated to all DNA libraries. Unique, asymmetric 10 base pair barcodes were added to the DNA fragment during library amplification to facilitate multiplexed exome capture and sequencing. Equal amounts of sample were pooled prior to overnight exome capture, with a slightly modified version of IDT’s xGenv1 probe library; all samples were captured on the same lot of oligos. The captured DNA was PCR amplified and quantified by qPCR. The multiplexed samples were pooled and then sequenced using 75 base pair paired-end reads with two 10 base pair index reads on the Illumina NovaSeq 6000 platform or S4 flow cells. A total of 146,068 samples were made available for processing. We were unable to process 2,628 samples, most of which failed QC during processing due to low or no DNA being present. A total of 143,440 samples were sequenced. The average 20X coverage is 96.5%, and 98.7% of the samples are above 90%. . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. Methods The MCPS WES and WGS data were reference-aligned with the OQFE protocol53 which employs BWA MEM to map all reads to the GRCh38 reference in an alt-aware manner, marks read duplicates, and adds additional per-read tags. The OQFE protocol retains all reads and original quality scores such that the original FASTQ is completely recoverable from the resulting . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint CRAM file. Single-sample variants are called with DeepVariant v0.10.0 54 using default WGS parameters or custom exome parameters53, generating a gVCF for each input OQFE CRAM file. These gVCFs are aggregated and joint-genotyped with GLnexus v1.3.1. All constituent steps of this protocol are executed with open-source software. Identification of low-quality variants from sequencing using machine learning. Briefly, we defined a set of positive control and negative control variants based on: (i) concordance in genotype calls between array and exome sequencing data; (ii) transmitted singletons; (iii) an external set of likely “high quality” sites; and (iv) an external set of likely “low quality” sites. To define the external “high quality” set, we first generated the intersection of variants that pass QC in both TOPMED Freeze 8 and gnomAD v3.1 genomes. This set was additionally restricted to 1000 genomes phase 1 high-confidence SNPs 34 and Mills and 1000 genomes gold-standard INDELs55, both available via GATK resource bundle (URLs). To define the external “low quality” set, we intersected gnomAD v3.1 fail variants with TOPMED Freeze 8 mendelian or duplicate discordant variants. Prior to model training, the control set of variants were binned by allele frequency, and then randomly sampled such that an equal number of variants were retained in the positive and negative labels across each frequency bin. Methods The model was then trained on up to 33 available site quality metrics, including, for example, the median value for allele balance in heterozygote calls and whether a variant was split from a multi-allelic site. We split the data into training (80%) and test (20%) sets. We performed a grid search with 5-fold cross-validation on the training set to identify the hyperparameters that return the highest accuracy during cross- validation, which are then applied to the test set to confirm accuracy. This approach identified as low-quality a total of 616,027 WES and 22,784,296 WGS variants (of which 161,707 and 104,452 were coding variants respectively). We further applied a set of hard filters to exclude monomorphs, unresolved duplicates, variants with >10% missingness, ≥3 mendel errors (WGS only), or failed HWE with excess heterozgosity (HWE p-value < 1x10-30 and observed heterozygote count > 1.5x expected heterozygote count), resulting in a dataset of 9,325,897 WES and 131,851,586 WGS variants (of which 4,037,949 and 1,460,499 were coding variants respectively) . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Variant annotation. Variants were annotated as previously described. Briefly, variants were annotated using Ensembl Variant Effect Predictor (VEP)56, with the most severe consequence for each variant chosen across all protein coding transcripts. In addition, we also derived canonical transcript annotations based on a combination of MANE, APPRIS and Ensembl canonical tags. MANE annotation is given the highest priority, followed by APPRIS. When neither MANE nor APPRIS annotation tags are available for a gene, the canonical transcript definition of Ensembl is used. Gene regions were defined using Ensembl Release 100. Variants annotated as stop gained, start lost, splice donor, splice acceptor, stop lost or frameshift, for which the allele of interest is not the ancestral allele, are considered predicted LOF variants. Methods Five annotation resources were utilized to assign deleteriousness to missense variants: SIFT57; PolyPhen2 HDIV and PolyPhen2 HVAR58; LRT 59; and MutationTaster 60. Missense variants were considered “likely deleterious” if predicted deleterious by all five algorithms, “possibly deleterious” if predicted deleterious by at least one algorithm, and “likely benign” if not predicted deleterious by any algorithm. Genotyping. Samples were genotyped on the Illumina Global Screening Array (GSA) v2 beadchip according to the manufacturer’s recommendations. A total of 146,068 samples were made available for processing, of which 145,266 (99.5%) were successfully processed. The average genotype call rate per sample was 98.4% and 98.4% of samples had a call rate above 90%. Samples showing disagreement between genetically-determined and reported sex (n=1,827), low quality samples (call rates below 90%) (n=2,276), genotyping chip variants discordant with exome data (n=44), genetically-identified sample duplicates (n=1,063 total samples) were excluded. In addition, n=1,122 samples were flagged by MCPS for exclusion and n=223 samples were failed for “other” reasons. In total, 4,435 unique samples did not pass one or more of our QC metrics. The remaining 140,831 samples were then used to compile a project- level VCF (PVCF) for downstream analysis. This dataset contained 650,380 poly-morphic variants. Genotyping QC. The input array data from the RGC Sequencing Lab consisted of 140,831 samples and 650,380 variants and were passed through multiple quality control steps: checks for consistency of genotypes in sex chromosomes (steps 1-4); sample- and variant-level missingness . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint filters (steps 5-6); the Hardy-Weinberg equilibrium exact test applied to a set of 81,747 3rd- degree unrelated samples, identified from the initial relatedness analysis by PLINK and PRIMUS (step 7); setting genotypes with Mendel errors in nuclear families to missing (step 8); and the second round of steps 5-7 (step 9). Methods PLINK commands associated with each step are displayed in column 2 (Supplementary Table 9). The final post-QC array data consisted of 138,511 and 559,923 variants. Array phasing. We used SHAPEIT v4.1.3 61 to phase the array dataset of 138,511 samples and 539,315 autosomal variants that passed the array QC procedure. To improve the phasing quality, we leveraged the inferred family information by building a partial haplotype scaffold on unphased genotypes at 1,266 trios from 3,475 inferred nuclear families identified (randomly selecting one offspring per family when there were more than 1). We then ran SHAPEIT one chromosome at a time, passing the scaffold information with the --scaffold option. Exome and whole genome phasing. We separately phased the SVM filtered exome and whole genome sequencing datasets onto the array scaffold. For the WGS phasing we used WhatsHap62 to extract phase information in the sequence reads and from the subset of available trios and pedigrees, and this information was fed into SHAPEIT v4.2.2 via the --use-PS 0.0001 option. Phasing was carried out in chunks of 10,000 and 100,000 variants (WES and WGS respectively) and using 500 SNPs from the array data as a buffer at the beginning and end of each chunk. The use of the phased scaffold of array variants means that chunks of phased sequencing data can be concatenated together to produce whole chromosome files that preserve the chromosome-wide phasing of array variants. A consequence of this process is that when a variant appears in both the array and sequencing datasets, it is the data from the array dataset that is used. To assess the performance of the WGS phasing process, we repeated the phasing of chromosome 2 by removing the children of the 200 mother-father-child trios. We then compared the phase of the trio parents to that in the phased dataset that included the children. We observed a mean switch error rate of 0.0024. Without using the WhatsHap to leverage phase information in sequencing reads increases the mean switch error rate to 0.0040 (Supplementary Figure 22). . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . Methods CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Relatedness, pedigree reconstruction and network visualization. The relatedness inference criteria and relationship assignments were based on kinship coefficients and probability of zero IBD sharing from the KING software26. We reconstructed all first-degree family networks using PRIMUSv1.9.0 30 applied to the IBD-based KING estimates of relatedness along with the genetically derived sex and reported age of each individual. 99.3% of the first-degree family networks were reconstructed unambiguously. To visualize the relationship structure in MCPS we used the Graphviz software (see URLs) to construct networks such as Supplementary Figure 5. We used the sfdp layout engine which uses a “spring” model that relies on a force-directed approach to minimize edge length. Measuring IBD segments and homozygosity. To identify IBD segments and measure runs of homozygosity, we ran hap-ibd (v1.0) 27 using the phased array dataset of 138,511 samples and 538,614 sites from autosomal loci. Hap-ibd was run with the parameter min-seed=4, which looks for IBD segments that are at least 4 cM long. We filtered out IBD segments in regions of the genome with fourfold more or fourfold less than the median coverage along each chromosome following the procedure in IBDkin28, and filtered out segments overlapping regions with fourfold less than the median SNP marker density (Supplementary Figure 30). For the homozygosity analysis, we intersected the sample with the exome data to evaluate loss of function variants, resulting in a sample of 138,200. We further overlaid the ROH segments with local ancestry estimates, and assigned ancestry where the ancestries were concordant between haplotypes and posterior probability was >0.9, assigning ancestry to 99.8% of the ROH. Principal Components Analysis. We used the workflow described in Privé et al. 202063 and implemented in the R package bigsnpr. In brief, pairwise kinship coefficients are estimated with Plink (v2.0) and samples were pruned for first and second-degree relatedness (kinship coefficient < 0.0884) to obtain a set of unrelated individuals. Linkage disequilibrium (LD) clumping was performed with a default LD r2 threshold of 0.2 and regions with long-range LD were iteratively detected and removed using a procedure based on evaluating robust Mahalanobis distances of PC loadings. Methods Sample outliers are detected using a procedure based on K nearest neighbours. Principal component (PC) scores and loadings for the first 20 robust Mahalanobis distances of PC loadings. Sample outliers are detected using a procedure based on K nearest neighbours. Principal component (PC) scores and loadings for the first 20 . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint PCs are efficiently estimated using truncated singular value decomposition (SVD) of the scaled genotype matrix. After removal of variant and sample outliers, a final iteration of truncated SVD was performed to obtain the PCA model. The PC scores and loadings from this model were then used to project withheld samples, including related individuals, into the PC space defined by the model using the Online Augmentation, Decomposition and Procustes (OADP) algorithm. For each PC analysis in this study, variants with minor allele frequency (MAF) < 0.01 were removed. ADMIXTURE analysis. ADMIXTURE64 version 1.3.0 (URLs) was used to estimate ancestry proportions in a set of 3,964 reference samples representing African, European, East Asian, and American ancestries from a dataset of merged genotypes. 765 samples of African ancestry were obtained from 1KG (n=661) and HGDP (n=104), 658 samples of European ancestry were obtained from 1KG (n=503) and HGDP (n=155), and 727 samples of East Asian ancestry were obtained from 1KG (n=504) and HGDP (n=223). American samples were limited 716 indigenous Mexican samples from the MAIS study, 64 admixed Mexican American samples from Los Angeles from 1KG (MXL), 21 Maya and 13 Pima samples from HGDP, and 1,000 unrelated Mexican samples from MCPS. Included SNPs were limited to variants present on the Illumina GSAv2 genotyping array for which TOPMED-imputed variants in the MAIS study had info r2 ≥ 0.9 (m=199,247 SNPs). Methods To select the optimum number of ancestry groups (K) to include in the admixture model, five-fold cross validation was performed for each K in the set 4 to 25 with the –cv flag. In order to obtain ancestry proportion estimates in the remaining set of 137,511 MCPS samples, the population allele frequencies (P) estimated from the analysis of reference samples were fixed as parameters so that the remaining samples could be projected into the admixture model. Projection was performed for the K=4 model and for the K=18 model that yielded the lowest cross validation error, and point estimation was attained with the block relaxation algorithm. External datasets used in genetic analyses. The Metabolic Analysis of an Indigenous Sample (MAIS) genotyping datasets were obtained from Professor Lorena Orozco from Insituto Nacional de Medicina Genómica (INMEGEN). For 644 samples, genotyping was performed using the Affymetrix Human 6.0 array (n=599,727 variants). An additional 72 . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint samples (11 ancestry groups) were genotyped with the Illumina Omni 2.5 array (n=2,397,901 variants). The set of 716 indigenous samples represent 60 of the 68 recognised ethnic groups in Mexico2. Per chromosome variant call files (VCF) for each genotyping array were uploaded to the TOPMed Imputation Server (URLs) and imputed from a multi-ethnic reference panel of 97,256 whole genomes. Phasing and imputation were performed using the programs eagle and MiniMac, respectively. The observed coefficient of determination (r2) for the reference allele frequency between the reference panel and the genotyping array was 0.696 and 0.606 for the Affymetrix and Illumina arrays, respectively. samples (11 ancestry groups) were genotyped with the Illumina Omni 2.5 array (n=2,397,901 variants). The set of 716 indigenous samples represent 60 of the 68 recognised ethnic groups in Mexico2. Methods It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint The seven group analysis used 666 African samples, 659 European samples, 98 Mexico-North, 42 Mexico-Northwest, 185 Mexico-Central, 128 Mexico-South and 163 Mexico-Southeastern samples at 204,626 autosomal and chromosome X SNPs. The 3 group analysis used 666 African samples, 659 European samples and 163 Native Mexican samples at 505,834 autosomal and chromosome X SNPs. The reference samples were phased with SHAPEIT v4.1.2 using default settings. RFMix was applied to 138,511 MCPS samples in the phased array dataset. Selected RFMix v2 parameters (-e 5 --reanalyze-reference -n 5 -G 15) tuned the LAI inference algorithm to perform 5 rounds of Expectation-Maximization (EM) with an option to treat reference haplotypes if they were query haplotypes and update the set of reference haplotypes in each EM round; the average number of generations since expected admixture was set to 15; and the number of terminal nodes for the random forest classifier was set to 5. Fine-scale population structure based on IBD sharing IBD segments from hap-ibd were summed across pairs of individuals to create a network of IBD sharing represented by weight matrix 𝑊∈ ℝ≥0 𝑛×𝑛 for 𝑛 samples. Each entry 𝑤𝑖𝑗∈𝑊 gives the total length in cM of the genome that individuals i and j share identical by descent. We sought to create a low-dimensional visualization of the IBD network. We took an approach similar to Han et al. 2017 35 , who use the eigenvectors of the normalized graph Laplacian as coordinates for a low-dimensional embedding of the IBD network. Let 𝐷 be the degree matrix of the graph with 𝑑𝑖𝑖= ∑𝑤𝑖𝑗 𝑗 and 0 elsewhere. The normalized (random walk) graph Laplacian is defined to be 𝐿= 𝐼−𝐷−1𝑊, where I is the identity matrix. The matrix 𝐿 is positive semi-definite, with eigenvalues 0 = 𝜆0 ≤𝜆1 ≤⋯≤𝜆𝑛−1. The multiplicity of eigenvalue 0 is determined by the number of connected components in the IBD network. If L is fully connected, the eigenvector associated with eigenvalue 0 is constant, while the remaining eigenvectors can be used to compute a low-dimensional representation of the IBD network. Methods Per chromosome variant call files (VCF) for each genotyping array were uploaded to the TOPMed Imputation Server (URLs) and imputed from a multi-ethnic reference panel of 97,256 whole genomes. Phasing and imputation were performed using the programs eagle and MiniMac, respectively. The observed coefficient of determination (r2) for the reference allele frequency between the reference panel and the genotyping array was 0.696 and 0.606 for the Affymetrix and Illumina arrays, respectively. Physical positions of imputed variants were mapped from genome build GRCh37 to GRCh38 using the program LiftOver and only variant positions included on the Affymetrix Global Screening Array version 2 (GSAv2) were retained. After further filtering out variants with imputation info r2 < 0.9, the following quality control steps were performed prior to merging of the MAIS Affymetrix and Illumina datasets: 1) removal of ambiguous variants (i.e. A/T and C/G polymorphisms); 2) removal of duplicate variants; 3) identifying and correcting allele flips; 4) removal of variants with position mismatches. Merging was performed with the -- bmerge command in Plink (v1.9). We used publicly available genotypes from the Human Genome Diversity Panel65 HDPG; n=929) and 1000 Genomes Project 66 (KG; n=2,504). To obtain a combined global reference dataset for downstream analyses of population structure, admixture, and local ancestry, the HGDP and KG datasets were merged. The resulting merged public reference dataset was subsequently merged with the MAIS dataset and MCPS genotyping array dataset. Each merge was performed with the –bmerge function in Plink (v1.9) after removing ambiguous variants, removing duplicate variants, identifying and correcting allele flips, and removing variants with position mismatches. The combined global reference dataset comprised 199,247 variants and 142,660 samples. Local Ancestry Inference. Reference samples used in the LAI were selected from a TeraStructure ancestry analysis of the HGDP, 1000G and MAIS samples. A continental ancestry score threshold ≥ 0.90 was applied to exclude samples with extensive admixture from the reference set. . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. Methods If 𝑝 is the desired dimension, and 𝑢1,… , 𝑢𝑝 the bottom 1 … 𝑝 eigenvectors of 𝐿 (indexed from 0), the matrix 𝑈∈ℝ𝑛 ×𝑝 with columns 𝑢1,… , 𝑢𝑝 define a low-dimensional representation of each individual in the IBD network 67.67. In practice, we solve the generalized eigenvalue problem to obtain 𝑢1,… , 𝑢𝑝. 𝑊𝑢= 𝜇𝐷𝑢 𝑊𝑢= 𝜇𝐷𝑢 . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint If u is an eigenvector of 𝐿 with eigenvalue 𝜆, then 𝑢 solves the generalized eigenvalue problem with eigenvalue 1 −𝜆. If u is an eigenvector of 𝐿 with eigenvalue 𝜆, then 𝑢 solves the generalized eigenvalue problem with eigenvalue 1 −𝜆. To apply to the IBD network of the MCPS cohort, we first removed edges with weight >72 cM following Han et al. 2017. We did this to avoid the influence on extended families on the visualization. We next extracted the largest connected component from the IBD network, and computed the bottom 𝑢1,… , 𝑢20 eigenvectors of the normalized graph Laplacian. Fine-scale population structure based on haplotype sharing. To examine fine-scale population structure using haplotype sharing we calculated a haplotype copying matrix L using IMPUTE5 6868 with entries Lij that are the length of sequence individual i copies from individual j. structure using haplotype sharing we calculated a haplotype copying matrix L using IMPUTE5 6868 with entries Lij that are the length of sequence individual i copies from individual j. IMPUTE5 employs a scalable imputation method that can handle very large haplotype reference panels. At its core is an efficient HMM that can estimate the local haplotype sharing profile of a ‘target’ haplotype with respect to a ‘reference’ set of haplotypes. Methods To avoid the costly computations of using all the reference haplotypes, an approach based on the PBWT data structure is used to identify a subset of reference haplotypes that leads to negligible loss of accuracy. We leveraged this methodology to calculate the copying matrix L, using array haplotypes from a set of 58,329 unrelated individuals as both target and reference datasets, and used the --ohapcopy –ban-repeated-sample-names flags to ban each target haplotype being able to copy itself. SVD on a scaled centred matrix was performed using the bigstatsr package 63 to generate 20 PCs. This is equivalent to an eigen-decomposition of the variance-covariance matrix of recipients’ shared segment lengths. Imputation experiments. We imputed the filtered array dataset using both the MCPS10k reference panel and the TOPMed imputation server. For TOPMed imputation we used Plink2 to convert this dataset from Plink1.9 format genotypes to unphased VCF genotypes. For compatibility with TOPMed imputation server restrictions, we split the samples in this dataset into six randomly assigned subsets of about 23,471 samples, and also into chromosome specific bgzipped VCF files. Using the NIH Biocatalyst API (see URLs) we submitted these six jobs to the TOPMed imputation server. Upon completion of all jobs, we used bcftools merge to join the resulting dosage VCFs spanning all samples. For the MCPS10k imputation we used . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint IMPUTE 5 v1.1.5. Each chromosome was split into chunks using the imp5Chunker program with minimum window size 5Mb, and minimum buffer size 500Kb. Information scores were calculated using qctool (URLs). IMPUTE 5 v1.1.5. Each chromosome was split into chunks using the imp5Chunker program with minimum window size 5Mb, and minimum buffer size 500Kb. Information scores were calculated using qctool (URLs). Methods It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint To validate the MCPS allele frequencies we downloaded the gnomAD v3.1 reference dataset (see URLs) and retained only high-quality variants annotated as passed QC (FILTER=”PASS”), SNVs, outside low-complexity regions and with the number of called samples greater than 50% of the total sample size (N = 76,156). We additionally overlapped gnomAD variants with TOPMed Freeze 8 high-quality variants (FILTER=”PASS”) (see URLs) . We further merged gnomAD variants and MCPS exome variants by the C:P:R:A (chromosome:position: reference allele:alternative allele) names and excluded MCPS singletons, which were heterozygous in ancestry. That resulted in 2,249,986 overlapping variants available for comparison with the MCPS WES data. Median sample sizes in gnomAD non- Finish Europeans, African/Admixed African and Admixed American population groups were N = 34,014, 20,719 and 7,639 respectively. Methods The 1000 Genomes WGS dataset was downloaded (URLs) and filtered to remove sites that are multi-allelic sites, duplicated, have missingness >2%, Hardy-Weinberg p-value < 1e-8 in any sub- population, and MAF<0.1% in any sub-population. We used only those 490 American (AMR) samples in the MXL, CLM, PUR and PEL sub-populations. We constructed 2 subsets of genotypes on chromosome 2 from the Illumina HumanOmniExpressExome (8v1-2) and Illumina GSA (v2) arrays, and these used as input to the TOPMed and MCPS10k imputation pipelines. We measured imputation accuracy by comparing the imputed dosage genotypes to the true (masked) genotypes at variants not on the arrays. Markers were binned according to the MAF of the marker in 490 AMR samples. In each bin, we report the squared correlation (r2) between the concatenated vector of all the true (masked) genotypes at markers and the vector of all imputed dosages at the same markers. Ancestry specific allele frequency estimation. The LAI results consist of segments of inferred ancestry across each haplotype of the phased array dataset. Since the WES and WGS alleles were phased onto the phased array scaffold we inferred the ancestry of each exome allele using interpolation from the ancestry of the flanking array sites. For each WES and WGS variant on each phased haplotype we determined the RFMix ancestry probability estimates at the two flanking array sites and used those to interpolate their ancestry probabilities. Ancestry specific frequencies are then calculated from the weighted allele counts and summed ancestry probabilities. Singleton sites can be hard to phase using existing methods. Family information and phase information in sequencing reads was used in the WGS phasing, and this will have helped to phase a proportion of the singleton sites. In the WES dataset we found that 46% of exome singletons occurred in stretches of heterozygous ancestry. For these variants we gave equal weight to the two ancestries when estimating allele frequencies. . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. Data availability The MCPS investigators welcome requests from researchers who wish to access data from the Mexico City Prospective Study. If you are interested in obtaining data from the study for research purposes, or in collaborating with MCPS investigators on a specific research proposal, please visit our study website [http://www.ctsu.ox.ac.uk/research/prospective-blood-based-study- of-150-000-individuals-in-mexico] where you can download the study’s Data and Sample Access Policy in English or Spanish. The MCPS10k imputation reference panel described in this manuscript can be used freely for imputation through the University of Michigan Imputation server (see URLs). URLs MCPS Allele Frequency browser https://rgc-mcps.regeneron.com/ SHAPEIT https://odelaneau.github.io/shapeit4/ QCTOOL https://www.well.ox.ac.uk/~gav/qctool_v2/ MakeScaffold https://github.com/odelaneau/makeScaffold Hap-IBD https://github.com/browning-lab/hap-ibd IMPUTE5 https://jmarchini.org/software/#impute-5 MICHIGAN imputation server https://imputationserver.sph.umich.edu/ gnomAD https://gnomad.broadinstitute.org TOPMed Freeze 8 BRAVO variant browser, https://bravo.sph.umich.edu/freeze8/hg38/ TOPMed imputation server https://imputation.biodatacatalyst.nhlbi.nih.gov Million Veteran Program https://www.research.va.gov/mvp/ PRIMUS https://primus.gs.washington.edu/primusweb/ GRAPHVIZ https://graphviz.org/ GATK resource bundle : https://gatk.broadinstitute.org/hc/en-us/articles/360035890811- Resource-bundle ADMIXTURE https://dalexander.github.io/admixture/ . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Ethics approval Approval for the study was given by the Mexican Ministry of Health, the Mexican National Council of Science and Technology (0595 P-M) and the Central Oxford Research Ethics Committee (C99.260) and the Ethics and Research commissions from the Medicine Faculty at the National Autonomous University of Mexico (UNAM) (FMED/CI/SPLR/067/2015). All study participants provided written informed consent. Acknowledgements The Mexico City Prospective Study has received funding from the Mexican Health Ministry, the National Council of Science and Technology for Mexico, the Wellcome Trust, Cancer Research UK, British Heart Foundation and the UK Medical Research Council. These funding sources had no role in the design, conduct or analysis of the study or the decision to submit the manuscript for publication. Genotyping, exome sequencing and whole genome sequencing was funded through an academic partnership between the National Autonomous University of Mexico, the University of Oxford, Regeneron, AstraZeneca and Abbvie. The computational aspects of this research were supported by the Wellcome Trust Core Award Grant Number 203141/Z/16/Z and the NIHR Oxford BRC. The views expressed are those of the authors and not necessarily those of the NHS, the NIHR or the UK Department of Health. The authors are grateful to all the MCPS participants, without whom this research would not be possible. The authors are grateful to Claudia Gonzaga-Jauregui, Yongtao Guan, Brian Browning, Ying Zhou and Kelsey Grinde for discussions and input on various aspects of this work. . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint Rights retention statement For the purpose of open access, the authors have applied a Creative Commons Attribution (CC BY) licence to any Author Accepted Manuscript version arising. Conceptualization: J.Marchini, A.B, G.R.A, J.R.E, J.A-D, P.K-M, R.T-C Data curation: R.W Data generation: M.H, X.B, S.B, W.S, J.D.O, J.G.R, L.O-O, H.G-O Formal Analysis: A.Z, J.T, J.D.B, J.Mbatchou, M.T. T.T, S.G, T.J, Y.Z, D.L, R.W, J.S, R.P, A.P, K.S, A.N Funding acquisition: J.A.D, A.B, R.C, J.R.E, S.P, P.K-M, R.T-C Methodology: A.Z, J.T, J.D.B, T.T, J.Marchini Project administration: M.J Resources: L.H, R.L, E.M, S.Z Software: A.Z, J.T, M.T, J.Mbatchou, S.G, T.J, J.S, Y.Z, J.Marchini Supervision: J.Marchini, J.R.E, T.T, G.A, W.S, J.G.R, E.J, J.A-D, J.B, S.P Visualization: A.Z, J.T, J.Mbatchou, S.G, J.D.B, T.J, M.T, Y.Z, J.S Writing first draft: J.Marchini, J.T, J.R.E, T.T Revision of manuscript: All authors Conceptualization: J.Marchini, A.B, G.R.A, J.R.E, J.A-D, P.K-M, R.T-C Project administration: M.J Revision of manuscript: All authors Revision of manuscript: All authors . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint References 1. Belbin, G. M., Nieves-Colón, M. A., Kenny, E. E., Moreno-Estrada, A. & Gignoux, C. R. Genetic diversity in populations across Latin America: implications for population and medical genetic studies. Curr. Opin. Genet. Dev. 53, 98–104 (2018). 2. Garcia-Ortiz, H. et al. The genomic landscape of Mexican Indigenous populations brings insights into the peopling of the Americas. Nat Commun 12, 5942 (2021). 3. Harris, D. N. et al. Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire. Proc. Natl. Acad. Sci. 115, E6526–E6535 (2018). 4. Colombian Breast Cancer Study, G. et al. Absence of the BRCA1 del (exons 9–12) mutation in breast/ovarian cancer families outside of Mexican Hispanics. Breast Cancer Res. Treat. 117, 679–681 (2009). 5. Alvarez, C. et al. BRCA1 and BRCA2 founder mutations account for 78% of germline carriers among hereditary breast cancer families in Chile. Oncotarget 8, 74233–74243 (2017). 6. Torres, D. et al. High proportion of BRCA1/2 founder mutations in Hispanic breast/ovarian cancer families from Colombia. Breast Cancer Res. Treat. 103, 225–232 (2007). 7. Anikster, Y. et al. Mutation of a new gene causes a unique form of Hermansky–Pudlak syndrome in a genetic isolate of central Puerto Rico. Nat. Genet. 28, 376–380 (2001). 8. Gonzaga-Jauregui, C. et al. Mutations in COL27A1 cause Steel syndrome and suggest a founder mutation effect in the Puerto Rican population. Eur J Hum Genet 23, 342–346 (2015). 9. Athan, E. S. A Founder Mutation in Presenilin 1 Causing Early-Onset Alzheimer Disease in Unrelated Caribbean Hispanic Families. JAMA 286, 2257 (2001). . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 10. Lin, M., Park, D. S., Zaitlen, N. A., Henn, B. M. & Gignoux, C. R. Admixed Populations Improve Power for Variant Discovery and Portability in Genome-Wide Association Studies. Front Genet 12, 673167 (2021). 11. Martin, A. R. et al. References Clinical use of current polygenic risk scores may exacerbate health disparities. Nat. Genet. 51, 584–591 (2019). 12. Williams Amy, A. L. et al. Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature (2014) doi:10.1038/nature12828. 13. Wojcik, G. L. et al. Genetic analyses of diverse populations improves discovery for complex traits. Nature 570, 514–518 (2019). 14. Polfus, L. M. et al. Genetic discovery and risk characterization in type 2 diabetes across diverse populations. Hum. Genet. Genomics Adv. 2, 100029 (2021). 15. Schaid, D. J., Chen, W. & Larson, N. B. From genome-wide associations to candidate causal variants by statistical fine-mapping. Nat. Rev. Genet. (2018) doi:10.1038/s41576-018- 0016-z. 16. Nhlbi Trans-Omics for Precision Medicine Consortium et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature 590, 290–299 (2021). 17. Gaziano, J. M. et al. Million Veteran Program: A mega-biobank to study genetic influences on health and disease. J. Clin. Epidemiol. 70, 214–223 (2016). 18. Global Lipids Genetics, C. et al. Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program. Nat. Genet. 50, 1514–1523 (2018). 19. Tapia-Conyer, R. et al. Cohort Profile: The Mexico City Prospective Study. Int. J. Epidemiol. 35, 243–249 (2006). . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 20. Backman, J. D. et al. Exome Sequencing and Analysis of 454,787 UK Biobank Participants. Nature 599, 628–634 (2021). 21. Karczewski, K. J. et al. The Mutational Constraint Spectrum Quantified from Variation in 141,456 Humans. Nature 581, 434–443 (2020). 22. Voight, B. F. & Pritchard, J. K. Confounding from Cryptic Relatedness in Case-Control Association Studies. PLOS Genet. 1, e32 (2005). 23. Shibata, K. et al. The confounding effect of cryptic relatedness for environmental risks of systolic blood pressure on cohort studies. Mol. Genet. Genomic Med. 1, 45–53 (2013). 24. Young, A. I. et al. References Relatedness disequilibrium regression estimates heritability without environmental bias. Nat. Genet. 50, 1304–1310 (2018). 25. Ramstetter, M. D. et al. Benchmarking Relatedness Inference Methods with Genome- Wide Data from Thousands of Relatives. Genetics 207, 75–82 (2017). 26. Manichaikul, A. et al. Robust relationship inference in genome-wide association studies. Bioinformatics 26, 2867–2873 (2010). 27. Browning, S. R. & Browning, B. L. High-Resolution Detection of Identity by Descent in Unrelated Individuals. Am. J. Hum. Genet. 86, 526–539 (2010). 28. Zhou, Y., Browning, S. R. & Browning, B. L. IBDkin: fast estimation of kinship coefficients from identity by descent segments. Bioinformatics 36, 4519–4520 (2020). 29. Staples, J. et al. Profiling and Leveraging Relatedness in a Precision Medicine Cohort of 92,455 Exomes. Am. J. Hum. Genet. 102, 874–889 (2018). 30. Staples, J. et al. PRIMUS: Rapid Reconstruction of Pedigrees from Genome-wide Estimates of Identity by Descent. Am. J. Hum. Genet. 95, 553–564 (2014). . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 31. Marchini, J., Cardon, L. R., Phillips, M. S. & Donnelly, P. The effects of human population structure on large genetic association studies. Nat. Genet. 36, 512–517 (2004). 32. Atkinson, E. G. et al. Tractor uses local ancestry to enable the inclusion of admixed individuals in GWAS and to boost power. Nat. Genet. 53, 195–204 (2021). 33. Bitarello, B. D. & Mathieson, I. Polygenic Scores for Height in Admixed Populations. G3 Bethesda Md 10, 4027–4036 (2020). 34. Auton, A. et al. A Global Reference for Human Genetic Variation. Nature 526, 68–74 (2015). 35. Han, E. et al. Clustering of 770,000 genomes reveals post-colonial population structure of North America. Nat. Commun. 8, 14238 (2017). 36. Leslie, S. et al. The fine-scale genetic structure of the British population. Nature 519, 309–314 (2015). 37. Li, N. & Stephens, M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165, 2213–2233 (2003). 38. Maples, B. K., Gravel, S., Kenny, E. E. & Bustamante, C. D. RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am. J. Hum. Genet. 93, 278– 288 (2013). 39. Zou, J. Y. et al. Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns. References Proc. Natl. Acad. Sci. 112, 13621–13626 (2015). 40. Risch, N. et al. Ancestry-related assortative mating in Latino populations. Genome Biol. 10, R132 (2009). 41. McHugh, C., Brown, L. & Thornton, T. A. Detecting Heterogeneity in Population Structure Across the Genome in Admixed Populations. Genetics 204, 43–56 (2016). . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 42. Guan, Y. Detecting Structure of Haplotypes and Local Ancestry. Genetics 196, 625–642 (2014). 43. Lind, J. M. et al. Elevated male European and female African contributions to the genomes of African American individuals. Hum. Genet. 120, 713–722 (2007). 44. Bryc, K., Durand, E. Y., Macpherson, J. M., Reich, D. & Mountain, J. L. The Genetic Ancestry of African Americans, Latinos, and European Americans across the United States. Am. J. Hum. Genet. 96, 37–53 (2015). 45. Ceballos, F. C., Joshi, P. K., Clark, D. W., Ramsay, M. & Wilson, J. F. Runs of homozygosity: windows into population history and trait architecture. Nat Rev Genet 19, 220– 234 (2018). 46. Moreno-Estrada, A. et al. The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science 344, 1280–1285 (2014). 47. Mercader, J. M. et al. A Loss-of-Function Splice Acceptor Variant in IGF2 Is Protective for Type 2 Diabetes. Diabetes 66, 2903 (2017). 48. Akbari, P. et al. Sequencing of 640,000 exomes identifies GPR75 variants associated with protection from obesity. Science 373, eabf8683 (2021). 49. García-Ortiz, H. et al. The genomic landscape of Mexican Indigenous populations brings insights into the peopling of the Americas. Nat. Commun. 12, 5942 (2021). 50. Ongaro, L. et al. The Genomic Impact of European Colonization of the Americas. Curr. Biol. 29, 3974-3986.e4 (2019). 51. Robinson, M. R. et al. Genetic evidence of assortative mating in humans. Nat. Hum. Behav. 1, 1–13 (2017). . References CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 52. Yengo, L. et al. Imprint of assortative mating on the human genome. Nat. Hum. Behav. 2, 948–954 (2018). 52. Yengo, L. et al. Imprint of assortative mating on the human genome. Nat. Hum. Behav. 2, 948–954 (2018). 53. Krasheninina, O. et al. Open-source mapping and variant calling for large-scale NGS data from original base-quality scores. bioRxiv 2020.12.15.356360 (2020) doi:10.1101/2020.12.15.356360. 54. Poplin, R. et al. A universal SNP and small-indel variant caller using deep neural networks. Nat. Biotechnol. 36, 983–987 (2018). 55. Mills, R. E. et al. An initial map of insertion and deletion (INDEL) variation in the human genome. Genome Res. 16, 1182–1190 (2006). 56. McLaren, W. et al. The Ensembl Variant Effect Predictor. Genome Biol. 17, 122 (2016). 56. McLaren, W. et al. The Ensembl Variant Effect Predictor. Genome Biol. 17, 122 (2016). 57. Kumar, P., Henikoff, S. & Ng, P. C. Predicting the effects of coding non-synonymous 56. McLaren, W. et al. The Ensembl Variant Effect Predictor. Genome Biol. 17, 122 (2016). 57. Kumar, P., Henikoff, S. & Ng, P. C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073–1081 (2009). 57. Kumar, P., Henikoff, S. & Ng, P. C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073–1081 (2009). 58. Adzhubei, I. A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248–249 (2010). 59. Chun, S. & Fay, J. C. Identification of deleterious mutations within three human genomes. Genome Res. 19, 1553–1561 (2009). 60. Schwarz, J. M., Rödelsperger, C., Schuelke, M. & Seelow, D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat. Methods 7, 575–576 (2010). 61. Delaneau, O., Zagury, J.-F., Robinson, M. R., Marchini, J. L. & Dermitzakis, E. T. Accurate, scalable and integrative haplotype estimation. Nat. Commun. 10, 5436 (2019). Accurate, scalable and integrative haplotype estimation. Nat. Commun. 10, 5436 (2019). ate, scalable and integrative haplotype estimation. Nat. Commun. 10, 5436 (2019). 62. Patterson, M. et al. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. J. Comput. Biol. 22, 498–509 (2015). . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint 63. Prive, F., Aschard, H., Ziyatdinov, A. & Blum, M. G. B. 52. Yengo, L. et al. Imprint of assortative mating on the human genome. Nat. Hum. Behav. 2, 948–954 (2018). Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr. Bioinformatics 34, 2781–2787 (2018). 64. Alexander, D. H. & Lange, K. Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 12, 246 (2011). 65. Bergström, A. et al. Insights into human genetic variation and population history from 929 diverse genomes. Science 367, eaay5012–eaay5012 (2020). 66. Byrska-Bishop, M. et al. High Coverage Whole Genome Sequencing of the Expanded 1000 Genomes Project Cohort Including 602 Trios. bioRxiv 2021.02.06.430068 (2021) doi:10.1101/2021.02.06.430068. 67. Koren, Y. Drawing graphs by eigenvectors: theory and practice. Comput. Math. Appl. 49, 1867–1888 (2005). 68. Rubinacci, S., Ribeiro, D. M., Hofmeister, R. J. & Delaneau, O. Efficient Phasing and Imputation of Low-Coverage Sequencing Data Using Large Reference Panels. Nat. Genet. 53, 120–126 (2021). . CC-BY 4.0 International license available under a which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint . CC-BY 4.0 International license available under a (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made The copyright holder for this preprint this version posted June 29, 2022. ; https://doi.org/10.1101/2022.06.26.495014 doi: bioRxiv preprint History and socio-demographics of Mexico City The difference in genetic ancestry identified between the inhabitants of Coyoacán and Iztapalapa has a historical correlation. The Mexico City districts of Coyoacán and Iztapalapa have existed since the pre-Hispanic times when they were relatively close (particularly Coyoacán) to the great city of Tenochtitlan. Although the indigenous populations settled in those places were the initial settlements, the population dynamics changed substantially over time, starting with the arrival of the Spaniards. Many Spaniards, including the conqueror Hernán Cortés, resided in Coyoacán while the capital of New Spain was being built (currently the historic center of the CDMX) over the ruins of Tenochtitlan. However, the modern populations of Coyoacán and Iztapalapa derive largely from the development of urban settlements and migrations that occurred from the 1950s to the 1970s. During this period of the twentieth century both districts, but particularly Iztapalapa, received large numbers of indigenous migrants from the Central (Nahuas, Otomies, Purepechas), South (Mixtecos, Zapotecos, Mazatecos), and Southeast (Chinantecos, Totonacas and Mayas) of the country. Today, Coyoacán houses a wide range of cultural and educational spaces and includes many middle and upper-class neighborhoods where those with more significant purchasing power, including many foreigners and Mexican mestizos with more European ancestry, have settled. Iztapalapa, further from the city center and with fewer cultural areas, is more affordable and remains popular among indigenous populations and those who migrate to Mexico City from rural parts of Mexico. The difference in genetic ancestry identified between the inhabitants of Coyoacán and Iztapalapa has a historical correlation. The Mexico City districts of Coyoacán and Iztapalapa have existed since the pre-Hispanic times when they were relatively close (particularly Coyoacán) to the great city of Tenochtitlan. Although the indigenous populations settled in those places were the initial settlements, the population dynamics changed substantially over time, starting with the arrival of the Spaniards. Many Spaniards, including the conqueror Hernán Cortés, resided in Coyoacán while the capital of New Spain was being built (currently the historic center of the CDMX) over the ruins of Tenochtitlan. However, the modern populations of Coyoacán and Iztapalapa derive largely from the development of urban settlements and migrations that occurred from the 1950s to the 1970s. During this period of the twentieth century both districts, but particularly Iztapalapa, received large numbers of indigenous migrants from the Central (Nahuas, Otomies, Purepechas), South (Mixtecos, Zapotecos, Mazatecos), and Southeast (Chinantecos, Totonacas and Mayas) of the country. History and socio-demographics of Mexico City Today, Coyoacán houses a wide range of cultural and educational spaces and includes many middle and upper-class neighborhoods where those with more significant purchasing power, including many foreigners and Mexican mestizos with more European ancestry, have settled. Iztapalapa, further from the city center and with fewer cultural areas, is more affordable and remains popular among indigenous populations and those who migrate to Mexico City from rural parts of Mexico. Table 1: Number of coding variants discovered in exome sequencing of 141,046 MCPS participants. Variants were annotated using VEP. Predicted function for each variant was defined as the most deleterious consequence spanning all protein-coding transcripts in Ensembl v100. MAC = Minor Allele Count, IQR = Inter Quartile Range, SD = Standard Deviation. Variant category (All transcripts) N variants (% with MAC=1) Median number of alternate alleles per participant (IQR) Mean number of alternate alleles per participant (SD) Median number of variants per participant (IQR) Mean number of variants per participant (SD) Coding regions 4,037,949 (30.87) 29,119 (291) 29,126 (235) 20,849 (628) 20,795 (454) Predicted function In-frame indels 44,469 (30.97) 281 (16) 281 (12) 207 (14) 207 (10) Synonymous 1,233,054 (28.04) 14,900 (169) 14,902 (134) 10,641 (320) 10,615 (234) Missense 2,526,776 (31.4) 13,585 (163) 13,588 (127) 9,722 (300) 9,699 (217) Likely benign 535,622 (27.94) 9,908 (121) 9,910 (93) 6,748 (191) 6,735 (138) Possibly deleterious 1,441,180 (31.17) 3,564 (74) 3,564 (56) 2,857 (113) 2,853 (82) Likely deleterious 549,974 (35.38) 114 (16) 114 (12) 111 (15) 112 (12) pLOF 233,650 (40.06) 354 (20) 354 (15) 273 (19) 273 (14) Start lost 9,768 (36.1) 27 (5) 27 (4) 21 (4) 21 (3) Stop gain 77,589 (39.05) 85 (9) 85 (7) 67 (8) 67 (6) Stop lost 3,539 (35.21) 13 (3) 13 (3) 10 (2) 10 (2) Splice donor 26,364 (40.06) 38 (6) 38 (5) 30 (5) 30 (4) Frameshift 96,098 (41.29) 146 (14) 147 (10) 113 (13) 114 (9) Splice acceptor 20,292 (40.81) 44 (6) 44 (5) 32 (5) 32 (4) Table 1: Number of coding variants discovered in exome sequencing of 141,046 MCPS participants. Variants were annotated using VEP. Predicted function for each variant was defined as the most deleterious consequence spanning all protein-coding transcripts in Ensembl v100. MAC = Minor Allele Count, IQR = Inter Quartile Range, SD = Standard Deviation. n exome sequencing of 141,046 MCPS participants. Variants were annotated Table 2 : Comparison of WES and WGS datasets in coding genes. History and socio-demographics of Mexico City Variants were annotated with VEP. Predicted function is defined by canonical transcript consequence in Ensembl v100. Counts are restricted to the same set of 9,950 individuals with both WGS and WGS available. All variants passed QC for the respective platform. AAF = Alternate Allele Frequency, IQR = Inter Quartile Range, SD = Standard Deviation. History and socio-demographics of Mexico City Variant category (Canonical transcripts) MCPS WGS - All Coding Regions (N=9950) MCPS WES Downsampled - All Coding Regions (N=9950) # Variants (All AAF) Median number of alternate alleles per participant (IQR) Mean number of alternate alleles per participant (SD) Median number of unique variants per participant (IQR) Mean number of unique variants per participant (SD) # Variants (All AAF) Median number of alternate alleles per participant (IQR) Mean number of alternate alleles per participant (SD) Median number of unique variants per participant (IQR) Mean number of unique variants per participant (SD) Coding regions 1370878 28252.5 (290.75) 28260 (233) 20247 (621.75) 20182 (456) 1340335 27589 (286) 27595 (230) 19791 (601) 19725 (441) In-frame indels 15694 276 (15) 276 (11) 201 (14) 201 (10) 14927 265 (15) 266 (12) 196 (13) 196 (10) Synonymous 468904 14930 (173) 14933 (136) 10672 (332) 10639 (244) 461349 14691 (170) 14695 (134) 10504 (325.75) 10472 (239) Missense 828706 12819 (160) 12822 (124) 9189 (290) 9164 (211) 809985 12433 (157.75) 12435 (121) 8924 (278) 8900 (203) Likely benign 198955 9460 (119) 9461 (92) 6450 (186.75) 6436 (136) 185621 9063 (116) 9064 (89) 6177 (175) 6164 (127) Possibly deleterious 469321 3246 (71) 3248 (54) 2623 (108) 2617 (79) 463209 3256 (73) 3257 (54) 2630 (107) 2624 (78) Likely deleterious 160430 113 (15) 114 (11) 111 (16) 111 (12) 161155 114 (16) 114 (12) 111 (15) 112 (12) pLOF 57574 229 (16) 229 (12) 178 (14) 178 (11) 54074 199 (15) 199 (11) 157 (14) 157 (10) Start lost 1854 8 (3) 9 (2) 7 (2) 7 (2) 1817 8 (3) 9 (2) 7 (2) 7 (2) Stop gain 19616 71 (8) 71 (6) 55 (7) 55 (5) 18898 62 (9) 62 (6) 48 (7) 48 (5) Stop lost 681 4 (3) 5 (2) 3 (1) 3 (1) 642 4 (2) 4 (2) 3 (1) 3 (1) Splice donor 6623 25 (5) 25 (4) 21 (5) 21 (3) 5867 15 (5) 15 (3) 13 (4) 13 (3) Frameshift 23985 100 (12) 100 (8) 77 (9) 78 (7) 22420 91 (11) 91 (8) 72 (9) 72 (7) Splice acceptor 4815 19 (4) 19 (3) 14 (3) 14 (3) 4430 18 (4) 18 (3) 14 (3) 14 (2) Table 2 : Comparison of WES and WGS datasets in coding genes. Variants were annotated with VEP. Predicted function is defined by canonical transcript consequence in Ensembl v100. History and socio-demographics of Mexico City Counts are restricted to the same set of 9,950 individuals with both WGS and WGS available. All variants passed QC for the respective platform. AAF = Alternate Allele Frequency, IQR = Inter Quartile Range, SD Standard Deviation Table 2 : Comparison of WES and WGS datasets in coding genes. Variants were annotated with VEP. Predicted function is defined by canonical transcript consequence in Ensembl v100. Counts are restricted to the same set of 9,950 individuals with both WGS and WGS available. All variants passed QC for the respective platform. AAF = Alternate Allele Frequency, IQR = Inter Quartile Range, SD = Standard Deviation. Table 3 : Ancestry specific allele frequencies at GWAS loci previously reported in studies of Mexican and Latin/Central American populations. MCPS Native Mexican, European and African allele frequencies, estimated in MCPS WES/WGS data using our deconvolution approach, are reported together MCPS Raw allele frequencies calculated directly on raw MCPS data. Allele frequencies for three relevant population groups available in gnomAD 3.1 are added for comparison. Table 3 : Ancestry specific allele frequencies at GWAS loci previously reported in studies of Mexican and Latin/Central American populations. MCPS Native Mexican, European and Afric frequencies, estimated in MCPS WES/WGS data using our deconvolution approach, are reported together MCPS Raw allele frequencies calculated directly on raw MCPS data. Allele frequencies fo population groups available in gnomAD 3.1 are added for comparison. Table 3 : Ancestry specific allele frequencies at GWAS loci previously reported in studies of Mexican and Latin/Central American populations. MCPS Native Mexican, European and African allele frequencies, estimated in MCPS WES/WGS data using our deconvolution approach, are reported together MCPS Raw allele frequencies calculated directly on raw MCPS data. Allele frequencies for three relevant population groups available in gnomAD 3.1 are added for comparison. History and socio-demographics of Mexico City MCPS Allele Frequencies gnomAD v3.1 Allele Frequencies Gene GWAS trait rsID CPRA ID Effect MCPS Source Raw Native Mexican European African Admixed American Non-Finish European African/ Admixed African MTHFR Folate metabolism rs1801133 1:11796321:G:A missense WES 0.559 0.669 0.361 0.055 0.444 0.337 0.112 TCHH Hair shape rs11803731 1:152110849:A:T missense WES 0.061 0.000 0.194 0.014 0.111 0.206 0.034 PAPPA2 Bronchodilator drug response rs77977790 1:176726343:T:C intronic WES 0.1002 0.132 0.041 0.001 0.054 0.052 0.01 DSTYK Eye color trait - C (saturation) rs3795556 1:205143783:T:C 3′-UTR WES 0.369 0.435 0.217 0.431 0.314 0.234 0.376 EPHB2 T2D (BMI adjusted) rs10465543 1:22807725:G:A Intronic WES 0.261 0.305 0.172 0.177 0.232 0.198 0.173 EDAR Beard thickness rs365060 2:108959280:C:G intronic WGS 0.686 0.978 0.115 0.659 0.386 0.073 0.532 LSAMP Type 2 diabetes (BMI unadjusted) rs938911 3:116701355:A:G intronic WGS 0.050 0.003 0.116 0.303 0.108 0.149 0.316 FGF12 Type 2 diabetes (BMI unadjusted) rs9831045 3:192757470:T:A intronic WGS 0.714 0.731 0.654 0.887 0.681 0.605 0.852 ANO10 Hip circumference (adjusted for BMI) rs149681500 3:43396572:C:T intronic WGS 0.002 0.000 0.000 0.049 0.006 0.000 0.036 PROK2 Waist circumference (adjusted for BMI) rs6809759 3:71937742:G:A intergenic WGS 0.418 0.324 0.624 0.308 0.537 0.647 0.387 HSD17B13 Liver disease rs72613567 4:87310240:T:TA splice donor WES 0.076 0.001 0.242 0.055 0.168 0.269 0.069 ESR1 Breast cancer rs140068132 6:151633699:A:G TF binding site WES 0.203 0.305 0.000085 0.000197 0.105 0.00012 0.001 LPA Lp(a)/CAD rs3798220 6:160540105:T:C missense WES 0.341 0.507 0.001 0.001 0.172 0.017 0.009 IRF4 Hair colour rs12203592 6:396321:C:T intronic WES 0.038 0.000 0.127 0.000 0.078 0.168 0.033 TFAP2B Obesity in children rs2206277 6:50830813:C:T intronic WES 0.491 0.66 0.169 0.16 0.285 0.187 0.143 CSMD1 T2D (BMI unadjusted) rs9773092 8:3358503:T:G intronic WGS 0.408 0.493 0.228 0.36 0.316 0.236 0.385 NIPAL2 Type 2 diabetes (BMI unadjusted) rs896416 8:98186838:C:T intergenic WGS 0.631 0.720 0.473 0.418 0.532 0.432 0.480 RP11-74C3.1 Type 2 diabetes (BMI adjusted and unadjusted) rs10809674 9:12015741:G:A intronic WGS 0.147 0.021 0.411 0.058 0.272 0.457 0.112 CDK5RAP2 Waist-hip ratio (adjusted for BMI) rs13301996 9:120570806:T:G intronic WGS 0.161 0.118 0.248 0.129 0.212 0.212 0.126 TLE4 Asthma rs2378383 9:79424447:A:G intergenic WGS 0.21 0.275 0.086 0.034 0.136 0.116 0.034 EMX2 Skin pigmentation rs11198112 10:117804632:C:T intergenic WES 0.207 0.233 0.152 0.186 0.158 0.155 0.203 GRID1 Balding rs2814331 10:86233584:C:T intronic WGS 0.926 0.966 0.848 0.848 0.867 0.883 0.908 SIK3 TG rs139961185 11:116936627:G:A intronic WES 0.228 0.345 0.00017 0.000097 0.087 0.004 0.002 NTM Waist-hip ratio (adjusted for BMI) (women) rs113818604 11:131960980:G:A intronic WGS 0.008 0.000 0.026 0.002 0.013 0.023 0.004 SPON1 Bronchodilator drug response rs77149876 11:14063584:T:C intronic WES 0.002 0.000 0.007 0.000 0.004 0.005 0.001 IGF2 T2D rs149483638 11:2140300:C:T splice acceptor WGS 0.234 0.35 0.00047 0.00059 0.142 0.000235 0.002 SLC22A18AS Waist-hip ratio (adjusted for BMI) rs79478137 11:2891739:C:T intronic WGS 0.004 0.000 0.005 0.064 0.009 0.007 0.079 FADS2 Waist circumference (adjusted for BMI) rs3168072 11:61864038:A:T 3′-UTR WGS 0.531 0.787 0.034 0.024 0.259 0.025 0.014 CIT Type 2 diabetes (BMI adjusted and unadjusted) rs202983 12:119724541:G:A intronic WES 0.131 0.040 0.302 0.289 0.217 0.282 0.238 HNF1A T2D rs483353044 12:120999288:G:A missense WES 0.005 0.007 0 0 0.00026 0 0 PRKCH Obesity (childhood) rs12935153 14:61442459:T:C intronic WES 0.933 0.939 0.971 0.436 0.916 0.968 0.499 SLC24A4 Bronchodilator drug response rs77441273 14:92493513:G:A missense WES 0.000 0.000 0.000 0.012 0.002 0.000 0.013 HERC2/OCA2 Hair colour rs12913832 15:28120472:A:G intronic WES 0.117 0.008 0.357 0.008 0.243 0.764 0.127 RORA TG rs148533712 15:60952685:T:C intronic WGS 0.548 0.735 0.17 0.378 0.343 0.161 0.353 PRSS53 Hair shape rs11150606 16:31087690:T:C missense WES 0.36 0.537 0.005 0 0.144 0.018 0.011 TOX3 Breast cancer rs4784227 16:52565276:C:T intronic WES 0.351 0.406 0.261 0.036 0.292 0.242 0.065 MAF Obesity (childhood) rs12935153 16:79633118:G:A intergenic WGS 0.270 0.138 0.558 0.354 0.414 0.594 0.351 SLC16A11 T2D rs75493593 17:7041768:G:T missense WES 0.359 0.534 0.007 0.001 0.15 0.007 0.005 MC4R BMI rs79783591 18:60371544:A:T missense WES 0.011 0.016 0.000061 0.00042 0.00098 0 0.000024 MC4R BMI rs72989246 18:60371544:A:T missense WGS 0.031 0.0011 0.099 0.0018 0.069 0.12 0.019 MFSD12 Hair shape rs2240751 19:3548233:A:G missense WES 0.282 0.414 0.008 0.008 0.079 0.01 0.005 WFDC5 Eye color trait - cos(H) (hue) rs17422688 20:45110478:G:A missense WES 0.051 0.000 0.169 0.022 0.110 0.173 0.042 NCOA3 Bronchodilator drug response rs115501901 20:47653964:C:T 3′-UTR WES 0.000 0.000 0.000 0.006 0.001 0.000 0.010 ETS2 Obesity (childhood) rs2836755 21:38920780:C:T Intronic WGS 0.255 0.081 0.617 0.324 0.454 0.620 0.363 DEPDC5 T2D (BMI unadjusted) rs5998144 22:31852258:T:C Intronic WGS 0.197 0.263 0.043 0.225 0.12 0.059 0.116 MPST Eye color trait - C (saturation) rs5756492 22:37028950:G:A Intronic WES 0.275 0.260 0.314 0.212 0.270 0.279 0.234 PNPLA3 Liver disease rs738409 22:43928847:C:G missense WES 0.624 0.798 0.272 0.172 0.424 0.226 0.14 Figure 1 : Familial relatedness. History and socio-demographics of Mexico City (a) Percentage of the genome estimated to have 0, 1 or 2 alleles identical-by-descent (IBD) (b) Distribution of the number of relatives that participants have in the MCPS cohort. The height of each bar shows the count of participants with the stated number of relatives. The colors indicate the proportions of each relatedness class within each bar. Figure 1 : Familial relatedness. (a) Percentage of the genome estimated to have 0, 1 or 2 alleles identical-by-descent (IBD) (b) Distribution of the number of relatives that participants have in the MCPS cohort. The height of each bar shows the count of participants with the stated number of relatives. The colors indicate the proportions of each relatedness class within each bar. th Native Mexican, European and African datasets. Panels A and B use 500 MCPS _AFR_YRI) and 107 European Iberian (KG_EUR_IBS) samples from the 1000 mples from 60 Native Mexican groups corresponding to Central, Southern, South Mexico from the Metabolic Analysis of an Indigenous Sample (MAIS). Panels C and D with the 1000 Genomes and MAIS samples. All other MCPS samples are projected onto Figure 2 : PCA analysis of MCPS together with Native Mexican, European and African datasets. Panels A and B use 500 MCPS samples together with 108 African Yoruba (KG_AFR_YRI) and 107 European Iberian (KG_EUR_IBS) samples from the 1000 Genomes Project dataset, and 591 unrelated samples from 60 Native Mexican groups corresponding to Central, Southern, South Eastern, Northern and North Western regions of Mexico from the Metabolic Analysis of an Indigenous Sample (MAIS). Panels C and D use an unrelated set of 58,051 samples together with the 1000 Genomes and MAIS samples. All other MCPS samples are projected onto the axes. Native Mexican, European and African datasets. Panels A and B use 500 MCPS CA analysis of MCPS together with Native Mexican, European and African da Figure 2 : PCA analysis of MCPS together with Native Mexican, European Figure 2 : PCA analysis of MCPS together with Native Mexican, European and African datasets. Panels A and B use 500 MCPS samples together with 108 African Yoruba (KG_AFR_YRI) and 107 European Iberian (KG_EUR_IBS) samples from the 1000 Genomes Project dataset, and 591 unrelated samples from 60 Native Mexican groups corresponding to Central, Southern, South Eastern, Northern and North Western regions of Mexico from the Metabolic Analysis of an Indigenous Sample (MAIS). History and socio-demographics of Mexico City Panels C and D use an unrelated set of 58,051 samples together with the 1000 Genomes and MAIS samples. All other MCPS samples are projected onto the axes. Figure 2 : PCA analysis of MCPS together with Native Mexican, European and African datasets. Panels A and B use 500 MCPS samples together with 108 African Yoruba (KG_AFR_YRI) and 107 European Iberian (KG_EUR_IBS) samples from the 1000 Genomes Project dataset, and 591 unrelated samples from 60 Native Mexican groups corresponding to Central, Southern, South Eastern, Northern and North Western regions of Mexico from the Metabolic Analysis of an Indigenous Sample (MAIS). Panels C and D use an unrelated set of 58,051 samples together with the 1000 Genomes and MAIS samples. All other MCPS samples are projected onto the axes. e 3: Global ancestry proportions estimated from local ancestry inference (LAI). Distributions of LAI-based global anc rtions from a 7-way analysis (panel B) and reduced to 3 continental groups (panel A). Stacked bar plots of 3-way (panel C) panel D) local ancestry proportions for 138,511 MCPS individuals. Figure 3: Global ancestry proportions estimated from local ancestry inference (LAI). Distributions of LAI-based global ancestry proportions from a 7-way analysis (panel B) and reduced to 3 continental groups (panel A). Stacked bar plots of 3-way (panel C) and 7- way (panel D) local ancestry proportions for 138,511 MCPS individuals. Figure 4: Imputation accuracy using the MCPS10k and TOPMed imputation panels. Accuracy is measured using the R2 between the imputed variants and 125,639 variants measured using exome sequencing on chromosome 2 in 67,079 MCPS samples not in (or related to) the MCPS reference panel samples. Results are stratified by allele frequency (x-axis on log10 scale), reference panel (red = MCPS, blue = TOPMed) and into two groups (top and bottom 50% of Native Mexican ancestry shown by solid and dashed lines). The left-hand plot shows results at on all samples. The right-hand plot shows the results stratified by the amount of Native Mexican estimated in each sample. Figure 4: Imputation accuracy using the MCPS10k and TOPMed imputation panels. Accuracy is measured using the R2 between the imputed variants and 125,639 variants measured using exome sequencing on chromosome 2 in 67,079 MCPS samples not in (or related to) the MCPS reference panel samples. History and socio-demographics of Mexico City Results are stratified by allele frequency (x-axis on log10 scale), reference panel (red = MCPS, blue = TOPMed) and into two groups (top and bottom 50% of Native Mexican ancestry shown by solid and dashed lines). The left-hand plot shows results at on all samples. The right-hand plot shows the results stratified by the amount of Native Mexican estimated in each sample. Figure 5 : Allele frequency comparison between MCPS WES and gnomAD. Allele frequencies on linear (top) and log (bottom) scale. The comparisons from left to right are MCPS European vs gnomAD Non-Finnish European, MCPS African vs gnomAD African, MCPS Native American vs gnomAD Latino/Admixed American and All MCPS vs gnomAD Latino/Admixed American. Figure 5 : Allele frequency comparison between MCPS WES and gnomAD. Allele frequencies on linear (top) and log (bottom) scale. The comparisons from left to right are MCPS European vs gnomAD Non-Finnish European, MCPS African vs gnomAD African, MCPS Native American vs gnomAD Latino/Admixed American and All MCPS vs gnomAD Latino/Admixed American.
https://openalex.org/W2234286331
https://www.nature.com/articles/srep19351.pdf
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Parity and All-cause Mortality in Women and Men: A Dose-Response Meta-Analysis of Cohort Studies
Scientific reports
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Parity and All-cause Mortality in Women and Men: A Dose-Response Meta-Analysis of Cohort Studies Yun Zeng1, Ze-min Ni3, Shu-yun Liu1, Xue Gu1, Qin Huang4, Jun-an Liu2 & Qi Wang1 received: 03 July 2015 accepted: 08 December 2015 Published: 13 January 2016 received: 03 July 2015 accepted: 08 December 2015 Published: 13 January 2016 Yun Zeng1, Ze-min Ni3, Shu-yun Liu1, Xue Gu1, Qin Huang4, Jun-an Liu2 & Qi Wang To quantitatively assess the association between parity and all-cause mortality, we conducted a meta- analysis of cohort studies. Relevant reports were identified from PubMed and Embase databases. Cohort studies with relative risks (RRs) and 95% confidence intervals (CIs) of all-cause mortality in three or more categories of parity were eligible. Eighteen articles with 2,813,418 participants were included. Results showed that participants with no live birth had higher risk of all-cause mortality (RR= 1.19, 95% CI = 1.03–1.38; I2 = 96.7%, P < 0.001) compared with participants with one or more live births. Nonlinear dose-response association was found between parity and all-cause mortality (P for non- linearity < 0.0001). Our findings suggest that moderate-level parity is inversely associated with all- cause mortality. Multiple studies have shown that reproduction factors may affect the health of women in later life1–6. A recent meta-analysis showed that high parity is associated with reduced risk of pancreatic cancer7. A systematic review8 to studies of relationship between parity and mortality among women published before 2003 found that parity has long-term effect on women’s mortality. The report demonstrated that the relationship varied regarding to various populations and fertility patterns. We carefully scrutinized the studies listed in the review and included those that met our inclusion criteria. Studies on men also found that men’s mortality risk was associated with parity due to different socioeconomic status and parity-related habits and behaviors9. f p y “Antagonistic pleiotropy” and “disposable soma” theories, derived from experiments on both male and female Drosophila melanogaster, described the existence of a trade-off between reproductive and somatic maintenance, suggesting that parity is associated with increased risk of death10–13. However, other studies have presented contra- dictory findings, where parity is negatively associated with all-cause mortality2. Parity-related habits and behav- iors, such as smoking less, drinking less, and exercising more2,4,9 may contribute to reduction in total mortality. Another study suggested that parity was associated with decreased risk of death from respiratory diseases and cancers6. Some researchers have proposed a U-shaped association between parity and mortality risk1,6. www.nature.com/scientificreports www.nature.com/scientificreports www.nature.com/scientificreports Results Literature search. Results of the literature search and selection are shown in Fig. 1. We identified 5,447 and 4,883 articles from PubMed and Embase databases, respectively. Duplicates and papers that did not take parity as an exposure or those that did not related to parity and all-cause mortality were excluded. This left us with 45 articles for full-text review. A total of 27 articles were excluded after full-text review for the following reasons: (1) 14 did not report relevant outcome such as RR, 95% CI, or original data; (2) six did not provide parity categories or the categories were not appropriate for the analysis; (3) three only reported relative estimate risks and did not report 95% confidence intervals or original data; (4) two were duplicate publications on the same population; and (5) one only reported mortality ratio but did not explain how it was calculated; (6) one reported the number of sons and daughters separately. The remaining 181–6,9,15–25 articles had a total of 2,813,418 participants and were included in the meta-analysis. Study characteristics. Table 1 shows the characteristics of the studies included in the meta-analysis. The sample size of participants ranged from 718 to 822,593. Eleven studies were conducted on women only, two stud- ies were on men only, and five were on both women and men. The ages of female and male participants ranged from 23.8 to 100 years and 35 to 90 years, respectively. A total of five studies were conducted in the USA, two in Norway, three in Israel, and one each in UK, Netherland, Germany, Finland, Bangladesh, Japan, and Australia. Duration of follow-up in the included studies ranged from 2 to 42 years with a median of 18.7 years. Adjustment for confounding factors had not been done in two of the involved studies, but the other studies had controlled for factors such as age, marital status, education, smoking, drinking, socioeconomic status, age at first birth, and age at menopause. All studies had quality scores ranging from 6 to 9; four of them were of moderate quality and 14 were of high quality. All-cause mortality related to parity levels. Relationships between parity and all-cause mortality in women and men are shown in Table 2 and Figs 2–3. igure 1.  Selection of studies for inclusion in a meta-analysis of parity and all-cause mortality. Figure 1. Selection of studies for inclusion in a meta-analysis of parity and all-cause mortality. Parity and All-cause Mortality in Women and Men: A Dose-Response Meta-Analysis of Cohort Studies Yun Zeng1, Ze-min Ni3, Shu-yun Liu1, Xue Gu1, Qin Huang4, Jun-an Liu2 & Qi Wang1 Recently, a meta-analysis14 on studies published between 2005 and 2009 was conducted using an iterative strategy to search articles and a meta-regression model to assess the non-linear association of parity and all-cause mortality. The results indicated that moderate number of parity was associated with decreased mortality risk in both women and men and low or high level of parity was associated with increased mortality risk in them. The means of hazard ratios stratified by the number of covariates were estimated without 95% confidence intervals. The non-linear association was tested with parsimonious regression model which failed to provide 95% confidence intervals of hazard ratios. Therefore, we conduct a dose-response meta-analysis on studies published before 24 April 2015, including studies published in recent years to assess the association between parity and all-cause mortality among women and men quantitatively. We carefully scrutinized the studies listed in the meta-analysis mentioned above, and included those that meet our inclusion criteria. 1Department of Epidemiology and Biostatistics, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, China. 2Department of Social Medicine and Health Management, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, China. 3Women and Children Medical Center of Jiang-an District, Wuhan, Hubei Province, China. 4Department of Medical Rehabilitation, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, China. Correspondence and requests for materials should be addressed to Q.W. (email: wangqi_tj@hust.edu.cn) Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 1 www.nature.com/scientificreports/ Figure 1. Selection of studies for inclusion in a meta-analysis of parity and all-cause mortality. Results The pooled RR for participants with no live birth was 1.19 (95% CI =  1.03–1.38; I2 =  96.7%, P <  0.001) compared with that with 1 or more live births (Fig. 2). Begg’s test and Egger’s test revealed evidence of publication bias in the studies. The trim and fill method was used to recalculate the pooled RR, and results indicated that the imputed RR was identical to the original RR. In addition, no missing studies imputed in the contour enhanced the funnel plot. p p Compared with that of two live births, the pooled RRs of all-cause mortality were 1.17 (95% CI =  1.14–1.20; I2 =  30.3%, P =  0.127) for null parity, 1.15 (95% CI =  1.09–1.20; I2 =  79.5%, P <  0.001) for 1 live birth, 0.99 (95% CI =  0.97–1.01; I2 =  33.3%, P =  0.124) for 3 live births, 1.04 (95% CI =  0.99–1.09; I2 =  75.9%, P <  0.001) for 4 live births, and 1.12 (95% CI =  1.03–1.21; I2 =  95.7%, P <  0.001) for 5 or more live births (Fig. 3). No evidence of pub- lication bias was detected using Egger’s test or Begg’s test. However, when five or more live births were compared with two live births, Begg’s test indicated no publication bias while Egger’s test indicated otherwise. We used the trim and fill method to recalculate the pooled RR. Results showed that two studies were imputed to enhance the funnel plot, but the imputed RR was identical to the original RR, validating the robustness of the result. Subgroup analyses. To explore the potential source of statistical heterogeneity among the studies and assess the stability of the results, we conducted subgroup analyses by country, sex, quality score, duration of follow-up period, number of participants, and number of cases. Results of subgroup analyses are shown in Table 3. Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 2 www.nature.com/scientificreports/ Authors, year Coun- try Sex, age Follow-up period Follw-up length Case/subject Parity Adjustment variables Exposure assessment Outcome assessment Quality score Dior et. al., 2013 (1) Israel Wom- en 23.8– 60.9y 1964–2005 42 2,766/40,454 1,2–4,5–9,10+  Age at first birth, mother’s origin, socioeco- nomic status, diabetes mellitus, gestational diabetes mellitus, toxaemia, hypertension, smoking, multiple pregnancies, Cesarean sections Israeli Population Registry Israeli Population Registry 9 Jacobs et. Results al., 2012 (21) USA Wom- en 50–96y 1984–2007 24 707/1,294 0,1,2,3,4+  Age, years postmenopause, BMI, and HDL cholesterol Interviewer administered question- naire During follow-up 9 Simons et.al., 2012 (6) Aus- tralia Wom- en 69.6y 1988–2004 17 683/1,571 0.1,2,3,4,5,6+  Alcohol intake, smoking, peak expiratory flow, physical disability, self-rated health and atrial fibrillation, hypertension, diabetes, BMI Self-admin- istered ques- tionnaire Death record 8 Keizer.al., 2012 (9) Neth- er- lands Men 45–75y 1991–2007 17 1,551/4,961 0,1,2–3,4+  Age, chronic conditions, occupational class, education, drinking, smoking, live with partner Interviewer administered question- naire Statistics Netherlands 9 Jacobsen et.al., 2011 (18) USA Wom- en 27– 100y 1976–1988 13 3,122/12,688 0,1,2,3,4,5+  Marital status Self-admin- istered ques- tionnaire ICD-9 codes 6 Kuningas et.al., 2011 (23) Neth- er- lands Wom- en 68y 1990–2008 19 1,116/3,575 0,1,2–3,4+  education and age at baseline Self-admin- istered ques- tionnaire During follow-up 6 Tama- koshi et. al., 2011 (22) Japan Wom- en Men 40–79y 1988–2006 14.4 18,807/110,792 0,1,2,3,4,5+  Age, residential area group, marital status, smoking status, alcohol consumption status, walking hours, sleeping hours, consuming green-leafy vegetables, BMI, education, mental stress, disease history and employ- ment status Self-admin- istered ques- tionnaire Death certificates from the Direc- tor-General of the Prime Minister’s Office 8 Hank et. al., 2010 (3) Ger- many Wom- en 50–99y 1984–2007 24 Not availa- ble/9,514 0,1,2,3,4+  Age, marital status, education, homeowner, household income Interviewer administered question- naire During follow-up 9 Jaffe et. al., 2009 (4) Israel Men 45–89 y women 45–89 y 1995–2004 10 Men 13,309/71,733 women 6,128/62,822 1,2,3–4,5– 7,8+  Age, origin, education, rooms Census, interviewer administered question- naire Death record from the Israel Central Bureau of Statistics 9 Grundy et.al., 2008 (2) Nor- way Men 45–68y women 45–68y 1980–2003 24 Men 40,071/785,317 women 23,241/744,784 0,1,2,3,4,5+  Education, marital status Census, interviewer administered question- naire Death record from the Central Population Register 9 Ko- ski-Ra- hikkala et.al., 2006 (5) Fin- land Wom- en 49–83y 1966–2001 36 1,075/13,002 1,2–4,5–9,10+  Age, BMI, smoking, socioeconomic position, age at menarche, age at first birth Self-admin- istered ques- tionnaire Death record from the Population Registration Centre 8 Grundy et.al., 2005 (16) UK Wom- en 50–89y 1971–2000 30 29,329/87,477 0,1,2,3,4,5+  Age, marital status, social class, education, car access housing tenure, widowhood Census, interviewer administered question- naire The Office for National Statistics Longitudi- nal Study 8 Hurt et. www.nature.com/scientificreports/ Characteristics of cohort studies of Parity and All-cause mortality included in the Meta-Analysis. Abbreviations: BMI, body mass index. able 1. Characteristics of cohort studies of Parity and All-cause mortality included in the Meta-Analysis. Abbreviations: BMI, body mass index. No. of study Model selected Pooled RR 95% CI P* value Egger Begg I2 (%) P† value P‡ value 0 vs. 1+  17 Random 1.19 1.03–1.38 < 0.001 96.7 0.001 0.012 0 vs. 2 15 Fixed 1.17 1.14–1.20 0.127 30.3 0.215 0.843 1 vs. 2 16 Random 1.15 1.09–1.20 < 0.001 79.5 0.521 0.620 3 vs. 2 12 Fixed 0.99 0.97–1.01 0.124 33.3 0.510 1.000 4 vs. 2 8 Random 1.04 0.99–1.09 < 0.001 75.9 0.260 0.386 5+  vs. 2 8 Random 1.12 1.03–1.21 < 0.001 91.6 0.036 0.536 Table 2. Meta-analysis of parity and all-cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. †P value for Egger’s test. ‡P value for Begg’s test. Table 2. Meta-analysis of parity and all-cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. †P value for Egger’s test. ‡P value for Begg’s test. Subgroup analysis by country, sex of participants, and number of participants presented similar pooled RRs of all-cause mortality in relation to null parity compared with one or more live births. However, pooled analysis of the studies in Netherlands and Japan, with quality scores below 8 points, with duration of follow-up longer than 15 years, with 10,000 or less participants, or with 500 or fewer number of cases revealed that null parity was not associated with increased all-cause mortality compared with a parity level of one or more live births. Both women and men with one live birth had higher risk of all-cause mortality than those with two live births. However, the same pattern was not found among Germans and Americans, studies with quality scores below 8 points, and studies with 10,000 or fewer participants. Participants with five or more live births had increased all-cause death compared with those with two live births, except for Norwegians or studies with follow-up duration longer than 15 years.i y Statistical heterogeneity in all-cause mortality comparisons between one and two live births and between five or more and two live births were mainly from studies performed in Norway and Israel. When Norwegian studies were excluded, similar findings with reduced statistical heterogeneity were observed. www.nature.com/scientificreports/ www.nature.com/scientificreports/ Authors, year Coun- try Sex, age Follow-up period Follw-up length Case/subject Parity Adjustment variables Exposure assessment Outcome assessment Quality score Yasuda et.al., 1997 (25) USA Wom- en 65y 1984–1988 5 149/806 0,1–2,3+  Perceived health status, activities of daily living impairment, number of chronic conditions, and years of education Interviewer administered question- naire During follow-up 7 Lund et. al., 1990 (20) Nor- way Wom- en 25–84y 1970–1985 16 112,023/822,593 0,1+  Unadjusted Self-admin- istered ques- tionnaire Death record from the Central Population Register of the Central Bureau of Statistics 6 Kotler et. al., 1989 (19) USA Men 35–64y 1965–1982 18 342/1,731 0,1–3,4+  Age, marital status, parenthood Self-admin- istered ques- tionnaire Death record from the Califor- nia Death Registry 7 Table 1. Characteristics of cohort studies of Parity and All-cause mortality included in the Meta-Analysis. Abbreviations: BMI, body mass index. Authors, year Coun- try Sex, age Follow-up period Follw-up length Case/subject Parity Adjustment variables Exposure assessment Outcome assessment Quality score Yasuda et.al., 1997 (25) USA Wom- en 65y 1984–1988 5 149/806 0,1–2,3+  Perceived health status, activities of daily living impairment, number of chronic conditions, and years of education Interviewer administered question- naire During follow-up 7 Lund et. al., 1990 (20) Nor- way Wom- en 25–84y 1970–1985 16 112,023/822,593 0,1+  Unadjusted Self-admin- istered ques- tionnaire Death record from the Central Population Register of the Central Bureau of Statistics 6 Kotler et. al., 1989 (19) USA Men 35–64y 1965–1982 18 342/1,731 0,1–3,4+  Age, marital status, parenthood Self-admin- istered ques- tionnaire Death record from the Califor- nia Death Registry 7 Table 1. Characteristics of cohort studies of Parity and All-cause mortality included in the Meta-Analysis. Abbreviations: BMI, body mass index. No. of study Model selected Pooled RR 95% CI P* value Egger Begg I2 (%) P† value P‡ value 0 vs. 1+  17 Random 1.19 1.03–1.38 < 0.001 96.7 0.001 0.012 0 vs. 2 15 Fixed 1.17 1.14–1.20 0.127 30.3 0.215 0.843 1 vs. 2 16 Random 1.15 1.09–1.20 < 0.001 79.5 0.521 0.620 3 vs. 2 12 Fixed 0.99 0.97–1.01 0.124 33.3 0.510 1.000 4 vs. 2 8 Random 1.04 0.99–1.09 < 0.001 75.9 0.260 0.386 5+  vs. 2 8 Random 1.12 1.03–1.21 < 0.001 91.6 0.036 0.536 Table 2. Meta-analysis of parity and all-cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. †P value for Egger’s test. ‡P value for Begg’s test. Table 1. Results al., 2004 (17) Bang- ladesh Men 45–90y women 45–71y 1982–1998 17 Men 4,394/14,803 women 1,939/20,383 0–2,3–5,6– 8,9–11,12+  Age, time period, religion, education, occu- pation, area of residence, marital status Interviewer administered question- naire Death record from the Health and De- mographic Surveillance System 9 Wal- ter-Gin- zburg et. al., 2002 (24) Israel Wom- en Men 75y 1989–1997 9 813/2,400 0,1,2,3,4+  Unadjusted Interviewer administered question- naire Death record from the National Death Registry 7 Cooper et.al., 2000 (15) USA Wom- en 63–81y 1990–1991 2 108/718 0,1–2,3–4,5+  Age, smoking, use of estrogen replacement therapy, age at menopause, surgical Self-admin- istered ques- tionnaire During follow-up 6 Continued Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 3 Discussion In this meta-analysis, the association between parity and all-cause mortality was investigated. Evidence of a non- linear dose-response association between parity and all-cause mortality was found. Increased number of parity was associated with decreased risk of all-cause mortality, and the lowest risk reduction for all-cause mortality was observed among subjects with three to four live births. In addition, subgroup analysis revealed that statistical heterogeneity was affected mainly by the study locations.h g yf y y y The exact biological mechanisms underlying the nonlinear dose-response association between parity and risks of all-cause death in humans have not been fully understood. For men, the declining trend of nonlinear associa- tion of total death risk with increasing number of parity may be explained by parity-related habits and behaviors. It has been reported that participants with at least one live birth are more likely to have healthy behaviors, such as smoking less, drinking less, and exercising more compared with those with no live birth2,4,9. Such healthy behav- iors may contribute to the reduced total mortality observed among the former compared to the latter. Another possible explanation is the decreased risk of death from respiratory diseases and cancers among both males and females6. As for women, the physical changes related to reproduction may play an important role in reducing all-cause mortality. It is well-known that the serum estrogen levels of women can be elevated during pregnancy. In addi- tion, both in vitro and in vivo studies have suggested that endogenous estrogens may protect women from pan- creatic cancer, which is one of the leading causes of cancer-related deaths26,27. Experiments in rats have shown that estrogen inhibits the growth of preneoplastic pancreatic lesions and transplanted pancreatic carcinoma28,29. Additionally, parity is inversely associated with the risk of breast cancer among women30. Possible mechanisms for this include change in gene expression levels, variation in estrogen sensitivity, and change in the reaction of stem cells to estrogen31. g However, dose-response meta-analysis revealed that the total mortality risk was not further reduced by high parity (e.g., six or more live births). For men, people with high parity possibly have lower socioeconomic status, and risk of death is consequently higher because of poor access to healthcare services1. www.nature.com/scientificreports/ Statistical heterogeneity among all-cause mortality comparisons between four live births and two live births came mainly from studies in Norway and Japan. Studies conducted in Israel and Norway were the main sources of statistical heterogeneity among all-cause mortality comparisons between null parity and one or more live births. No evidence of signifi- cant statistical heterogeneity was observed after these studies were excluded. In addition, the pooled RR was not significantly altered. Dose-response association between parity and all-cause mortality. Eleven articles were included in our dose-response meta-analysis. Statistically significant evidence of non-linear association was found between parity and all-cause mortality (P =  <  0.0001 for non-linearity; Fig. 4). Compared with null parity, the pooled RRs of all-cause mortality were 0.98 (95% CI =  0.97–0.99) for one live birth, 0.97 (95% CI =  0.95–0.98) for two live births, 0.96 (95% CI =  0.94–0.98) for three live births, 0.96 (95% CI =  0.95–0.98) for four live births, 0.98 (95% CI =  0.96–0.99) for five live births, 0.99 (95% CI =  0.97–1.01) for six live births. The lowest risk reduction for all-cause mortality (0.96) was observed for 3–4 live births. In sensitivity analysis, we excluded categories of more than five live births2. The nonlinear association between parity and all-cause mortality was not materially changed after excluding the categories with parity number greater than 5 (P <  0.0001 for non-linearity). Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 4 www.nature.com/scientificreports/ Figure 2. Pooled risk estimate for all-cause mortality among participants with no live birth compared with participants with one or more live births. Figure 2. Pooled risk estimate for all-cause mortality among participants with no live birth compared with participants with one or more live births. Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 Discussion “Antagonistic pleiotropy” and “disposable soma” theories derived from experiments on both male and female Drosophila melanogaster describe a trade-off between reproductive and somatic maintenance and suggest that parity may be associated with increased risk of death10–13. For women, besides the socioeconomic factors mentioned above, other factors during pregnancy may increase the risk of death. High-parity-related all-cause death risk is proposed to be related to increased risk of cardiovascular diseases among women. Pregnancy may result in perturbations in carbohy- drate metabolism in women, leading to decreased glucose tolerance, increased insulin secretion, and insulin resistance1. Such changes increase the mortality caused by cardiovascular diseases. A prospective cohort study of 12,055 women in Finland showed that increased total mortality in high-parity groups was mainly attributed to increased mortality associated with cardiovascular diseases5. In addition, physical and psychological stress arising from pregnancy and childbearing may also increase the risk of death, especially among people with high parity (e.g., six or more live births)16. ( g ) Our dose-response meta-analysis suggested that a J-shaped nonlinear association exists between parity and all-cause mortality in both women and men, which is consistent with previous studies1,4,5,20. Some results of subgroup analysis were inconsistent with those of non-stratified analysis possibly due to low quality and/or Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 5 www.nature.com/scientificreports/ www.nature.com/scientificreports/ Figure 3. Pooled risk estimates for all-cause mortality among participants with zero (a), or one (b), or three (c), or four (d) or five or more (e) live births compared with participants with two live births. Figure 3. Pooled risk estimates for all-cause mortality among participants with zero (a), or one (b), or three (c), or four (d) or five or more (e) live births compared with participants with two live births. small sample size of the studies involved. For example, there were only two reports about all-cause mortality for Germans with one live birth compared to those with two. Subgroup analysis on such studies should be prevented because of limited data.h small sample size of the studies involved. For example, there were only two reports about all-cause mortality for Germans with one live birth compared to those with two. Subgroup analysis on such studies should be prevented because of limited data.h The observed statistical heterogeneity among studies could be attributed mainly to the diversity of study locations. Studies on Norwegians, Israelites, and Japanese showed large statistical heterogeneity. The larger pro- portions of higher-order planned births in more recent Norwegian cohorts because of higher availability of con- traception, legal abortion, and “family friendly” policies than in earlier Norwegian studies may be a plausible reason for the large statistical heterogeneity observed among Norwegian studies2. In Israel, parity is related to reli- gious belief, i.e., a large family size is a marker of religiousness, which may explain the large proportions of high parity in Israel compared with other countries. Thus, different proportions of parity arising from religious, social or cultural factors may be another reason for the statistical heterogeneity observed among studies. The declining fertility rate of Japan22 may also have contributed to the statistical heterogeneity observed here. y p y g y Our study has several strengths. First, most studies included in the analysis were cohort studies of large sample sizes and with long follow-up durations. This significantly minimized selection bias and considerably increased statistical power to detect potential association between parity and all-cause mortality. Second, subgroup and Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 6 www.nature.com/scientificreports/ Study Characteristic No. of study Model selected RR 95% CI P* value I2 (%) 0 vs. Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 www.nature.com/scientificreports/ of study Model selected RR 95% CI P* value I2 (%) Sex Women 6 Random 1.12 1.02–1.23 < 0.001 84.7 Men 2 Fixed 1.01 1.00–1.02 < 0.001 96.8 Duration of follow-up > 15 5 Random 1.10 0.99–1.15 < 0.001 86.1 < = 15 3 Fixed 1.21 1.16–1.28 0.264 25.0 Table 3. Stratified analysis on association of parity and all cause mortality. Abbreviations: C Table 3. Stratified analysis on association of parity and all cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. Table 3. Stratified analysis on association of parity and all cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. Table 3. Stratified analysis on association of parity and all cause mortality. Abbreviations: CI, confidence interval; RR, relative risk. *P value for heterogeneity. Figure 4. Results of dose-response analyses of parity and all-cause mortality. Parity was modeled with restricted cubic splines in a multivariate random-effects dose-response model. Null parity served as the reference group. The RRs are plotted on the log scale. Dashed lines represent 95% CIs for the spline model. Figure 4. Results of dose-response analyses of parity and all-cause mortality. Parity was modeled with restricted cubic splines in a multivariate random-effects dose-response model. Null parity served as the reference group. The RRs are plotted on the log scale. Dashed lines represent 95% CIs for the spline model. sensitivity analyses were used to investigate the source of statistical heterogeneity observed in our findings in great detail. Third, the previous meta-analysis14 shown a non-linear association between parity and all-cause mortality through a parsimonious regression model while did not report the 95% confidence intervals of haz- ard ratios; and in our study a dose-response meta-analysis was performed to quantitatively assess the associ- ation between parity and all-cause mortality and calculate hazard ratios with their 95% confidence intervals. Furthermore, in the previous meta-analysis14 the risk ratios were stratified by the number of covariates, while in this study the dose-response association was modeled after adjustment for many covariates, improving the precision and accuracy of our findings. i Our study has several limitations that should be addressed. First, non-marital birth or childbirth in previous marriage may be misclassified as null parity. This may have caused underestimation of the level of parity-related all-death risk. www.nature.com/scientificreports/ 1+  17 Random 1.19 1.03–1.38 < 0.001 96.7 Country Israel 5 Random 1.34 1.11–1.61 < 0.001 80.0 USA 6 Fixed 1.13 1.05–1.21 0.703 0.0 Netherlands 2 Fixed 0.96 0.89–1.03 0.051 73.8 Japan 2 Fixed 1.07 0.99–1.15 0.805 0.0 Sex Women 11 Random 1.25 1.04–1.50 < 0.001 96.8 Men 5 Random 1.13 1.03–1.24 0.041 59.9 Quality score > = 8 9 Random 1.21 1.10–1.33 < 0.001 80.2 < 8 8 Random 1.14 0.88–1.49 < 0.001 96.7 Duration of follow-up > 15 6 Random 1.14 0.87–1.50 < 0.001 98.3 < = 15 11 Random 1.22 1.11–1.36 < 0.001 72.5 No. of participants > 10,000 8 Random 1.32 1.11–1.58 < 0.001 96.7 < = 10,000 9 Random 1.06 0.96 –1.16 0.014 58.3 No. of cases > 500 13 Random 1.20 1.02–1.41 < 0.001 97.4 < = 500 4 Fixed 1.14 0.98–1.32 0.585 0.0 1 vs. 2 16 Random 1.15 1.09–1.20 < 0.001 79.5 Country USA 2 Fixed 1.10 0.98–1.22 0.808 0.0 Israel 5 Fixed 1.15 1.11–1.21 0.283 20.7 Norway 2 Random 1.25 1.14–1.37 0.001 90.9 UK 3 Fixed 1.06 1.02–1.09 0.745 0.0 Germany 2 Fixed 1.10 0.93–1.30 0.966 0.0 Japan 2 Fixed 1.14 1.08–1.21 0.670 0.0 Sex Women 11 Random 1.14 1.06–1.23 < 0.001 84.9 Men 4 Fixed 1.17 1.14–1.20 0.113 49.8 Quality score > = 8 14 Random 1.15 1.10–1.21 < 0.001 82.0 < 8 2 Fixed 1.10 0.98–1.22 0.818 0.0 Duration of follow-up > 15 8 Random 1.13 1.04–1.23 < 0.001 89.5 < = 15 8 Fixed 1.15 1.11–1.19 0.561 0.0 No. of participants > 10,000 12 Random 1.15 1.10–1.21 < 0.001 84.8 < = 10,000 4 Fixed 1.08 0.84–1.25 0.994 0.0 4 vs. 2 8 Random 1.04 0.99–1.09 < 0.001 75.9 Country UK 3 Fixed 1.04 0.99–1.10 0.579 0.0 Norway 2 Random 0.97 0.92–1.03 0.085 66.3 Japan 2 Random 1.11 1.02–1.21 0.074 68.7 Sex Women 6 Random 1.02 0.97–1.08 0.039 57.3 Men 2 Random 1.07 0.93–1.24 < 0.001 93.5 Duration of follow-up > 15 5 Random 1.00 0.96–1.05 0.067 54.5 < = 15 3 Fixed 1.11 1.06–1.16 0.141 48.9 5+  vs. 2 8 Random 1.12 1.03–1.21 < 0.001 91.6 Country UK 3 Fixed 1.14 1.09–1.21 0.496 0.0 Norway 2 Random 0.98 0.92–1.04 0.525 75.2 Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 7 www.nature.com/scientificreports/ Study Characteristic No. www.nature.com/scientificreports/ As for studies not reporting the precise number of births, we utilized categories of number of chil- dren for analysis in order to minimize misclassification. Additionally, biological parenthood and step-parenthood were not described in detail and were reported separately, which may also have reduced the risk estimate. However, Keizer et al. reported that a small proportion of step-parenthood was included in the population they studied, and that step-parenthood did not alter their findings on parity-related mortality among males9. Therefore, any effect of this limitation is likely to be minimal. Second, most of the studies involved in our analysis adjusted for many covariates, but some did not adjust for important confounding factors such as socioeconomic status, alcohol intake, smoking, education, chronic condition, and age at first birth. Third, most of the studies focused on the elderly, which may have led to survivor bias and underestimation of association between parity and all-cause mortality. Nevertheless, a 42-year follow-up cohort study1 suggested the presence of association between parity and risk of death among all participants, which validates the inferences drawn in the current study. In conclusion, results of our meta-analysis suggest that an association exists between parity and all-cause mortality. Low to moderate parity is associated with decreased risk of total death in both women and men. People with 3–4 live births have the lowest risk of total death. More prospective studies that control for all major con- founding factors as well as studies exploring the biological mechanisms underlying the effect of parity on death risk are still needed. Literature search and selection. If no adjusted risk estimate was presented, we used the crude risk estimate. If no risk estimate was reported, we calculated the crude risk estimate and its 95% CI using raw data provided with the article. Quality assessment. Quality assessment was conducted according to the Newcastle–Ottawa quality assess- ment scale33,34, which is a validated scale for cohort studies in meta-analysis. The highest score was 9, and scores of 0–3, 4–6, and 7–9 indicated low, moderate, and high quality studies, respectively. Statistical analysis. In our meta-analysis, we used pooled RRs and their 95% CIs to measure the association between parity and all-cause mortality. Any result stratified by age and sex was treated as a separate report. Statistical heterogeneity among studies was evaluated using Cochran’s Q test and I2 statistic35. I2 values of 25%, 50%, and 75% were assigned to low, moderate, and large statistical heterogeneities, respectively35. The fixed effect model was adopted when I2 was < 50%, whereas the random effect model was used when I2 was ≥ 50%36. To determine the source of statistical heterogeneity, we conducted subgroup analyses stratified by study location, sex, duration of follow-up (in years), size of cohort, and study quality.f For dose-response analysis, we used the two-stage random-effect dose-response meta-analysis method pro- posed by Greenland and Longnecker37–40 to determine the potential curve linear association between parity and all-cause mortality. This analysis was done by modeling parity using restricted cubic splines with three knots at 10%, 50%, and 90% percentiles of the distribution39,41. First, a restricted cubic spline model with two spline trans- formations (three knots minus one) was fitted in consideration of the correlation within each set of published RR40. Second, the restricted maximum likelihood method was used to combine the specific estimates of each study in the multivariate random effect meta-analysis42. An overall P value was calculated by testing whether the two regression coefficients were simultaneously equal to zero. A null hypothesis stating that coefficient of the sec- ond spline is equal to zero was created to test the non-linearity. Original parity levels reported in each study were used in the dose-response analysis. If parity intervals were provided, the midpoint between the lower and upper bounds of parity interval was regarded as the corresponding parity dose. Literature search and selection. Literature search and selection. Studies published before 24 April 2015 were searched in the PubMed and Embase databases. The search was limited to studies carried out in humans, and the following key words and Medical Subject Headings were used: (“parity” or “number of live birth” or “number of children” or “parities” or “number of deliveries” or “number of living birth” or “number of live births” or “number of livebirth” or “number of kids” or “number of kid”) AND (“mortality” or “death” or “mortalities” or “dying” or “death rate” or “death 8 Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 www.nature.com/scientificreports/ rates” or “fatality rate” or “fatality rates” or “rate death” or “rates death” or “deaths”). To find additional references, we manually searched the bibliographies of all retrieved studies and selected all relevant publications. Only stud- ies published in English were included. The following were excluded: conference literature, unpublished literature, and gray literature produced at all levels of government, academics, business, and industry in print and electronic formats, but not controlled by commercial publishers32. y p Published studies were included in the meta-analysis if they met the following criteria: 1) the study was either prospective or had a historical cohort study design; 2) parity was the subject of interest; 3) the outcome was all-cause mortality; 4) the investigators reported relative risk (RR), hazard ratio (HR), or odds ratio (OR) and the corresponding 95% confidence intervals (CIs) for each parity category. If multiple publications had the same population as subjects, we included the most recent and most complete study. Two independent investigators (YZ and ZN) conducted initial screening of all titles or abstracts and then evaluated all potentially relevant articles based on full-text reviews. Data extraction. Two investigators (SL and XG) independently performed eligibility evaluation, data extrac- tion, and quality assessment of each eligible study. All disagreements were discussed and resolved by consensus. The following data were extracted from each study: surname of the first author, publication year, study location, sex, and age range of the studied population, duration (in years) of follow-up, number of deaths, size of cohort, parity assessment, outcome assessment, parity category, RR or HR or OR and the 95% CI for each parity category, and factors adjusted in the report. If multiple estimates of the association were available, we extracted the estimate and adjusted for most covariates. Literature search and selection. In cases that involve an open-ended upper interval, we assumed that the category exhibited the same amplitude as the adjacent interval7,43.li Moreover, sensitivity analyses were conducted to examine the influence of specific studies or high parity categories on overall RRs by excluding specific studies or data points with parity level above five live births. Publication bias was evaluated by conducting Egger’s and Begg’s regression tests44,45. The STATA software (version 11.0; Stata Corporation, College Station, Texas, USA) was used to conduct all statistical analyses. All tests were two-sided with a significance level of 0.05. References 1. Dior, U. P. et al. Association between number of children and mortality of mothers: Results of a 37-year follow-up study. Ann Epidemiol. 23, 13–18 (2013). 1. Dior, U. P. et al. Association between number of children and mortality of mothers: Results of a 37-year follow-up study. Ann Epidemiol. 23, 13–18 (2013). 1. Dior, U. P. et al. Association between number of children and mortality of mothers: Results of a 37-year follow-up study. Ann Epidemiol. 23, 13–18 (2013). 2. Grundy, E. & Kravdal, O. Reproductive history and mortality in late middle age among Norwegian men and women. Am J E 167, 271–279 (2008). 2. Grundy, E. & Kravdal, O. Reproductive history and mortality in late middle age among Norwegian men and women. Am J Epidemiol 167, 271–279 (2008). 3. Hank, K. Childbearing history, later-life health, and mortality in Germany. Popul Stud (Camb). 64, 275–291 (2010). ff k b h Z l d l h f dd 4. Jaffe, D. H., Neumark, Y. D., Eisenbach, Z. & Manor, O. Parity-related mortality: Shape of association among middle-aged and elderly men and women. Eur J Epidemiol. 24, 9–16 (2009).f 5. Koski-Rahikkala, H., Pouta, A., Pietilainen, K. & Hartikainen, A. L. Does parity affect mortality among parous women? J Epidemio Community Health. 60, 968–973 (2006).h y 6. Simons, L. A., Simons, J., Friedlander, Y. & McCallum, J. Childbearing history and late-life mortality: The Dubbo study of Australian elderly. Age Ageing. 41, 523–528 (2012). y 6. Simons, L. A., Simons, J., Friedlander, Y. & McCallum, J. Childbearing history and late-life mortality: The Dubbo study of Australian elderly. Age Ageing. 41, 523–528 (2012). 7. Guan, H. B. et al. Parity and pancreatic cancer risk: a dose-response meta-analysis of epidemiologic studies. PLoS One. 9, e92738 (2014).hhf 8. Hurt, L. S., Ronsmans, C. & Thomas, S. L. The effect of number of births on women’s mortality: systematic review of the evidence for women who have completed their childbearing. Popul Stud (Camb). 60, 55–71 (2006). 8. Hurt, L. S., Ronsmans, C. & Thomas, S. L. The effect of number of births on women’s mortality: systematic review of the eviden women who have completed their childbearing. Popul Stud (Camb). 60, 55–71 (2006). p g p ( ) , ( ) 9. Keizer, R., Dykstra, P. A. & van Lenthe, F. J. Parity and men’s mortality risks. Eur J Public Health. 22, 343–347 (2012). y y y 10. Chapman, T. References Acknowledgements ( ) 45. Egger, M. D., S., G., Schneider, M. & Minder, C. Bias in meta-analysis detected by a simple, graphical test. BMJ. 315, 629–634 (1 Acknowledgementsh g The work was funded by the National Science Foundation of China (Grant no. 81573235), Fundamental Research Funds for the Central Universities (Grant nos. 2011QN202 and 2014TS048), Health and Family Commission of Wuhan Municipality (Grant no. WG15D20) and Wuhan Jiangan District Science and Technology Bureau (Grant no. 2014111904). The work was funded by the National Science Foundation of China (Grant no. 81573235), Fundamental Research Funds for the Central Universities (Grant nos. 2011QN202 and 2014TS048), Health and Family Commission of Wuhan Municipality (Grant no. WG15D20) and Wuhan Jiangan District Science and Technology Bureau (Grant no. 2014111904). References Int J Pancreatol. 7, 159–165 (1990). 28. Sandberg, A. A., Kirdani, R. Y., Varkarakis, M. J. & Murphy, G. P. Estrogen receptor protein of pancreas. Steroids. 22, 259–271 (1973). 29. Sandberg, A. A. & Rosenthal, H. E. Steroid receptors in exocrine glands: the pancreas and prostate. J Steroid Biochem. 11, 293–299 (1979). 27. Longnecker, D. S. & Sumi, C. Effects of sex steroid hormones on pancreatic cancer in the rat. Int J Pancreatol. 7, 159–165 (1990 28. Sandberg, A. A., Kirdani, R. Y., Varkarakis, M. J. & Murphy, G. P. Estrogen receptor protein of pancreas. Steroids. 22, 259–271 (1 29 S db A A & R th l H E St id pt i i l d th p d p t t J St id Bi h 11 293 g y g 29. Sandberg, A. A. & Rosenthal, H. E. Steroid receptors in exocrine glands: the pancreas and prostate. J Steroid Biochem. 11, 293–299 (1979). ( ) 30. Kelsey, J. L., Gammon, M. D. & John, E. M. Reproductive factors and breast cancer. Epidemiol Rev. 15, 36–47 (1993). y p 31. Britt, K., Ashworth, A. & Smalley, M. Pregnancy and the risk of breast cancer. Endocr Relat Cancer. 14, 907–933 (2007). h, A. & Smalley, M. Pregnancy and the risk of breast cancer. Endocr 32. Myohanen, L., Taylor, E. & Keith, L. Accessing grey literature in public health: New York academy of medicine’s grey lit report. GL6: Work on Grey in Progress, Conference Proceedings. 123–127 (2005).h p y g f g 3. Wells, G. A. et al. The Newcastle-Ottawa Scale (NOS) for assessing the quality of nonrandomized studies in meta-analyses. 201 y g f g 33. Wells, G. A. et al. The Newcastle-Ottawa Scale (NOS) for assessing the quality of nonrandomized studies in meta-analyse Available from: www ohri ca/programs/clinical epidemiology/oxford asp (Date of access: 15/August/2015) 33. Wells, G. A. et al. The Newcastle-Ottawa Scale (NOS) for assessing the quality of nonrandomized studies in me Available from: www.ohri.ca/programs/clinical_epidemiology/oxford.asp. (Date of access: 15/August/2015). Wells, G. A. et al. The Newcastle Ottawa Scale (NOS) for assessing the quality of nonrandomized studies in m vailable from: www.ohri.ca/programs/clinical_epidemiology/oxford.asp. (Date of access: 15/August/2015). p g _ p gy p ( g ) 34. Rostom, A. D. C. et al. Celiac Disease. Rockville (MD): Agency for Healthcare Research and Quality (US); 2004 Sep. (Evidence Reports/Technology Assessments, No. 104.) Appendix D. Quality Assessment Forms. References 44, 237–240 (1990).h y p y ( ) 1. Jacobs, M. B., Kritz-Silverstein, D., Wingard, D. L. & Barrett-Connor, E. The association of reproductive history with all-cause and cardiovascular mortality in older women: the Rancho Bernardo Study. Fertil Steril. 97, 118–124 (2012). y y 22. Tamakoshi, A. et al. Number of children and all-cause mortality risk: results from the Japan Collaborative Cohort Study. Eur J Public Health. 21, 732–737 (2011).h 23. Kuningas, M., Altmae, S., Uitterlinden, A. G., Hofman, A., van Duijn, C. M. & Tiemeier, H. The relationship between fertility and lifespan in humans. Age. 33, 615–622 (2011).h p g 4. Walter-Ginzburg, A., Blumstein, T., Chetrit, A. & Modan, B. Social factors and mortality in the old-old in Israel: The CALAS study J Gerontol B Psychol Sci Soc Sci. 57, S308–S318 (2002). y 25. Yasuda, N., Zimmerman, S. I., Hawkes, W., Fredman, L., Hebel, J. R. & Magaziner, J. Relation of social network characteristics to 5-year mortality among young-old versus old-old white women in an urban community. Am J Epidemiol. 145, 516–523 (1997). 26 Benz C Hollander C & Miller B Endocrine responsive pancreatic carcinoma: steroid binding and cytotoxicity studies in human y 25. Yasuda, N., Zimmerman, S. I., Hawkes, W., Fredman, L., Hebel, J. R. & Magaziner, J. Relation of social network characteristics to 5-year mortality among young-old versus old-old white women in an urban community. Am J Epidemiol. 145, 516–523 (1997). 26. Benz, C., Hollander, C. & Miller, B. Endocrine-responsive pancreatic carcinoma: steroid binding and cytotoxicity studies in human tumor cell lines. Cancer Res. 46, 2276–2281 (1986).f 5-year mortality among young-old versus old-old white women in an urban community. Am J Epidemiol. 145, 516–523 (1997). 26. Benz, C., Hollander, C. & Miller, B. Endocrine-responsive pancreatic carcinoma: steroid binding and cytotoxicity studies in human tumor cell lines. Cancer Res. 46, 2276–2281 (1986).f p tumor cell lines. Cancer Res. 46, 2276–2281 (1986).f 7. Longnecker, D. S. & Sumi, C. Effects of sex steroid hormones on pancreatic cancer in the rat. Int J Pancreatol. 7, 159–165 (1990). 8 Sandberg A A Kirdani R Y Varkarakis M J & Murphy G P Estrogen receptor protein of pancreas Steroids 22 259 271 (1973) 27. Longnecker, D. S. & Sumi, C. Effects of sex steroid hormones on pancreatic cancer in the rat. Int J Pancre 27. Longnecker, D. S. & Sumi, C. Effects of sex steroid hormones on pancreatic cancer in the rat. References et al. Cost of mating in Drosophila melanogaster females is mediated by male accessory gland products. Nature. 373, 241–244 (1995). 10. Chapman, T. et al. Cost of mating in Drosophila melanogaster females is mediated by male accessory gland products. Nature. 373, 241–244 (1995). Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 9 www.nature.com/scientificreports/ 1. Kirkwood, T. B. & Rose, M. R. Evolution of senescence: late survival sacrificed for reproduction. Philosophical transactions of the Royal Society of London. Biol Sci. 332, 15–24 (1991). y y 12. Partridge, L. & Barton, N. H. Optimality, mutation and the evolution of ageing. Nature. 362, 305–311 (1993). g p y 13. Westendorp, R. G. & Kirkwood, T. B. Human longevity at the c G. & Kirkwood, T. B. Human longevity at the cost of reproductive s p g y p 14. Moore, C., Hognas, R. S., Roelfs, D. J. & Shor, E. J-Curve? A Meta-Analysis of the Association between Parity and All-Cause P 14. Moore, C., Hognas, R. S., Roelfs, D. J. & Shor, E. J-Curve? A Meta-Analysis of the Association between Parity and All-Cause Parental Mortality. Paper presented at the 2014 Meeting of the Population Association of America, Boston, MA. Available from: http:// paa2014.princeton.edu/papers/142951. (2014).(Date of access: 2/September/2015). p p p p p 15. Cooper, G. S. et al. Age at menopause and childbearing patterns in relation to mortality. Am J Epidemiol. 151, 620–623 (2000) 16. Grundy, E. & Tomassini, C. Fertility history and health in later life: A record linkage study in England and Wales. Soc Sci Med 217–228 (2005).f 7. Hurt, L. S. et al. Long-term effects of reproductive history on all-cause mortality among adults in rural Bangladesh. Stud Fam Plann 35, 189–196 (2004).h 35, 189 196 (2004). 8. Jacobsen, B. K., Knutsen, S. F., Oda, K. & Fraser, G. E. Parity and total, ischemic heart disease and stroke mortality. The Adventis 8. Jacobsen, B. K., Knutsen, S. F., Oda, K. & Fraser, G. E. Parity and total, ischemic heart disease and stroke mortality. The Adventis Health Study, 1976-1988. Eur J Epidemiol. 26, 711–718 (2011).hfh y p 9. Kotler, P. & Wingard, D. L. The effect of occupational, marital and parental roles on mortality: The Alameda County study. Am Public Health. 79, 607–612 (1989). 0. Lund, E., Arnesen, E. & Borgan, J. K. Pattern of childbearing and mortality in married women–a national prospective study from Norway. J Epidemiol Community Health. References Available from: http://www.ncbi.nlm.nih.gov/ books/NBK35156/. (Date of access: 15/August/2015).h g ggins, J. P., Thompson, S. G., Deeks, J. J. & Altman, D. G. Measuring 35. Higgins, J. P., Thompson, S. G., Deeks, J. J. & Altman, D. G. Measuring inconsistency in meta-analyses. BMJ. 327, 557–560 (2003). 36. Higgins, J. P. & Green, S..Cochrane Handbook for Systematic Reviews of Interventions Version 5.1.0 [updated March 2011]. The Cochrane Collaboration, 2011. Available from: www.cochrane-handbook.org. (Date of access: 15/August/2015). gg , J ,h p , S G , k , J J & , G g y y J , ( ) 36. Higgins, J. P. & Green, S..Cochrane Handbook for Systematic Reviews of Interventions Version 5.1.0 [updated March 2011]. The Cochrane Collaboration, 2011. Available from: www.cochrane-handbook.org. (Date of access: 15/August/2015). gg y p Cochrane Collaboration, 2011. Available from: www.cochrane-handbook.org. (Date of access: 15/August/2015). 37. Berlin, J. A., Longnecker, M. P. & Greenland, S. Meta-analysis of epidemiologic dose-response data. Epidemiology. 4, 218 (1993). ( ) 38. Greenland, S. & Longnecker, M. P. Methods for trend estimation from summarized dose-response data, with applications to meta- analysis. Am J Epidemiol. 135, 1301–1309 (1992). y p 39. Orsini, N. et al. Meta-analysis for linear and nonlinear dose-response relations: examples, an evaluation of approximations, and software. Am J Epidemiol. 175, 66–73 (2012). ll l d l d l f d f d d d t p 0. Orsini, N., Bellocco, R. & Greenland, S. Generalized least squares for trend estimation of summarized dose-response data. Stata J 6, 40–57 (2006). ( ) 41. Harrell, F. E. Jr., Lee, K. L. & Pollock, B. G. Regression models in clinical studies: determining relationships between predictors and response. J Natl Cancer Inst. 80, 1198–1202 (1988).h response. J Natl Cancer Inst. 80, 1198–1202 (1988).h p 42. Jackson, D., White, I. R. & Thompson, S. G. Extending DerSimonian and Laird’s methodology to perform multivariate random effects meta-analyses. Stat Med. 29, 1282–1297 (2010). h effects meta-analyses. Stat Med. 29, 1282–1297 (2010). f y 3. Guan, H. B. et al. Parity and risk of colorectal cancer: a dose-response meta-analysis of prospective studies. PLoS One. 8, e75279 (2013). ( ) 44. Begg, C. B. & Mazumdar, M. Operating characteristics of a rank correlation test for publication bias. Biometrics. 50, 1088–1101 (1994). ( ) 45. Egger, M. D., S., G., Schneider, M. & Minder, C. Bias in meta-analysis detected by a simple, graphical test. BMJ. 315, 629–634 (1997). Author Contributions Y.Z. and Q.W. designed research; Y.Z. and Z.N. conducted research; S.L. and X.G. analyzed data; Y.Z., Q.H., J.L. and Q.W. wrote the draft; All authors read, reviewed and approved the final manuscript. Q.W. had primary responsibility for final content. Y.Z. and Q.W. designed research; Y.Z. and Z.N. conducted research; S.L. and X.G. analyzed data; Y.Z., Q.H., J.L. and Q.W. wrote the draft; All authors read, reviewed and approved the final manuscript. Q.W. had primary responsibility for final content. Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ Additional Informationi Additional Information Competing financial interests: The authors declare no competing financial interests. Competing financial interests: The authors declare no competing financial interests. Competing financial interests: The authors declare no competing financial interests. Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 10 www.nature.com/scientificreports/ How to cite this article: Zeng, Y. et al. Parity and All-cause Mortality in Women and Men: A Dose-Respons Meta-Analysis of Cohort Studies. Sci. Rep. 6, 19351; doi: 10.1038/srep19351 (2016). This work is licensed under a Creative Commons Attribution 4.0 International License. The im or other third party material in this article are included in the article’s Creative Commons lic unless indicated otherwise in the credit line; if the material is not included under the Creative Commons lic users will need to obtain permission from the license holder to reproduce the material. To view a copy o license, visit http://creativecommons.org/licenses/by/4.0/ tificreports/ How to cite this article: Zeng, Y. et al. Parity and All-cause Mortality in Women and Men: A Dose-Response Meta-Analysis of Cohort Studies. Sci. Rep. 6, 19351; doi: 10.1038/srep19351 (2016). This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ www.nature.com/scientificreports/ How to cite this article: Zeng, Y. et al. Parity and All-cause Mortality in Women and Men: A Dose-Response Meta-Analysis of Cohort Studies. Sci. Rep. 6, 19351; doi: 10.1038/srep19351 (2016). This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ Scientific Reports | 6:19351 | DOI: 10.1038/srep19351 11
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Analysis on Interfacial Performance of CFRPConcrete with Different Thickness of Adhesive Layer and CFRP Plate
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MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 https://doi.org/10.1051/matecconf/201814202001 © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). Analysis on Interfacial Performance of CFRP- Concrete with Different Thickness of Adhesive Layer and CFRP Plate Qingyong Guo1 *, Huijian Zhao1, Lei Chen1, Jize Mao1, and Wensong Zhang2 1College of Aerospace and Civil Engineering, Harbin Engineering University,Harbin 150001, China 2General Research Institute for Nonferrous Metals, Beijing 100088, China Abstract. The bond behavior of CFRP-concrete interface is the analysis foundation for concrete structures with external strengthening CFRP. In the paper, the influences of the thickness of CFRP plate and adhesive layer on interfacial adhesive properties are investigated through the finite element program. The influence rules of the thickness on the interfacial ultimate bearing capacity and the effective bond length are performed.The results show that the thickness of adhesive layer and CFRP plate has a significant effect on the interfacial performance of CFRP-concrete. * Corresponding author: qingyong622@126.com 2.2 Constitutive model of interface element Based on the analysis of nonlinear fracture mechanics, it can be seen that the bearing capacity of CFRP- concrete interface is related to the fracture energy of interface, and it is independent of the shape of bond slip curve[7]. Because the bilinear model is simple in form, it is easy to be used in finite element simulation. The bilinear model has three important parameters, namely, the initial shear stiffness of interface( 0 K ), the maximum shear stress at interface( max  ) and the interfacial fracture energy( f G ). Interfacial initial shear stiffness can be expressed as Interfacial initial shear stiffness can be expressed as max 0 0 K s   (1) (1) Where, 0s is the corresponding relative slip of the maximum shear stress. Interfacial fracture energy can be expressed as Where, 0s is the corresponding relative slip of the maximum shear stress. Interfacial fracture energy can be expressed as max 1 2 f f G s   (2) max 1 2 f f G s   (2) (2) Where, fs is the maximum slip of the interface. Where, fs is the maximum slip of the interface. 1 Introduction In recent years, the strengthening of building structure has become the focus of attention. At present, the commonly used reinforcement methods are increasing the old section method, cladding steel method, carbon fiber (Carbon Fiber, Reinforced, Polymer, referred to as CFRP) reinforcement method. Carbon fiber reinforcement has attracted wide attention due to its superior tensile and durability properties. Therefore, the study on interfacial properties of CFRP-concrete plays an important role in analysis on the performance of CFRP reinforced concrete structures. At present, researchers in China and abroad have made a great deal of studies on the interfacial performance of CFRP and concrete [1]. It is shown that the thickness of CFRP plate and interface adhesive layer have great influences on the interfacial bond behavior of CFRP-concrete. Otherwise, there arefew researches focus on the effects of the thickness of interface adhesive layer on bonding properties for CFRP- concrete. Peng Hui etc. concluded that the increase of the adhesive layer thickness reduced the fatigue damage, and the ultimate bearing capacity also increased [2]. Ma Tao etc. carried out single shear test finding that the initial peel load increases with the thicker adhesive layer[3].It is found that the layer thickness is one of the most important parameters for interfacial adhesive properties of CFRP and concrete,and there are differences among existing conclusions. As a result, there is need to do further study on it. The paper studies the influences of the thickness of CFRP plate and adhesive layer on interfacial adhesive properties by dint of the numerical analysis. The influence rules of the thickness on the interfacial ultimate bearing MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 https://doi.org/10.1051/matecconf/201814202001 capacity and the effective bond length are performed. Some conclusions have been drawn finally. capacity and the effective bond length are performed. Some conclusions have been drawn finally. 2.1 Plastic damage constitutive model of concrete The plastic damage model of ABAQUS is used for concrete. The model is based on the Lubliner[4] and Lee and Fenves[5] models. The model expresses the inelastic behavior of concrete materials using an isotropic damage elasticity combined with an isotropic tensile and compressive plastic model. The model considers the degradation of elastic tensile and compression stiffness strain caused by plastic strain. It can simulate the mechanical properties of concrete, such as crushing and tension fracture, and is a plastic model based on continuous medium[6]. 3 Finite element model At present, the methods to analyze the interface performance of CFRP-concrete by using finite element software can mainly be classified into two kinds. One is to divide concrete and CFRP into the same size units in the process of building the finite element model. Common nodes are used to establish a connection between the concrete and CFRP board, where the appropriate constitutive model of concrete is selected. The process of CFRP- concrete interfacial debonding is reflected by the cracking ofconcrete on the interface. The second method is to transform the nonlinear problem of concrete cracking at the interface into the failure of the interface element. It not only saves the computing cost, but also will consider the effect of adhesive thickness on the interfacial properties of CFRP- concrete. Therefore, the paper introduces the method of introducing special interface unit between CFRP plate and concrete. Fig. 1 is the geometrical size and load position of the model. Fig. 1. FRP-to-concrete bonded joints model 250 150 50 Concrete 50 F CFRP plate Fig. 1. FRP-to-concrete bonded joints model 250 150 50 Concrete 50 F CFRP plate Fig. 1. FRP-to-concrete bonded joints model Table 1. Material performance index [8] Material Project Parameter CFRP plate Elastic modulus 165000 MPa Tensile strength 2461 MPa Elongation 1.71% Epoxy resin Elastic modulus 2627 MPa Tensile strength 31.7 MPa Elongation 1.5% Concrete Strength 38.5MPa The width, height and length of the concrete specimen are 150mm, 150mm and 300mm separately. The width of CFRP plate is 50mm, the bond length is 200mm, and the 250 150 50 Concrete 50 F CFRP plate odel 250 150 50 Concrete 50 F CFRP plate Fig. 1. FRP-to-concrete bonded joints model Fig. 1. FRP-to-concrete bonded joints model Table 1. Material performance index [8] Material Project Parameter CFRP plate Elastic modulus 165000 MPa Tensile strength 2461 MPa Elongation 1.71% Epoxy resin Elastic modulus 2627 MPa Tensile strength 31.7 MPa Elongation 1.5% Concrete Strength 38.5MPa Table 1. Material performance index [8] Table 1. Material performance index [8] Table 1. Material performance index [8] Material Project Parameter CFRP plate Elastic modulus 165000 MPa Tensile strength 2461 MPa Elongation 1.71% Epoxy resin Elastic modulus 2627 MPa Tensile strength 31.7 MPa Elongation 1.5% Concrete Strength 38.5MPa Table 1. Material performance index [8] The width, height and length of the concrete specimen are 150mm, 150mm and 300mm separately. 2.3 The interface bond slip model Many researchers obtained different interface bond slip models through experimental study. Here Ueda et al. modelis adopted for simulation which considers more factors. It is expressed as follows,   2 2 Bs Bs f BG e e      (3) max 0.5 f BG   (4) 0 0.693 s B  (5) (3) (4) (5) 2 MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 https://doi.org/10.1051/matecconf/201814202001     0.108 0.833 6.846 / /1000 f f a a B E t G t  (6)     0.023 0.352 0.236 0.446 / /1000 f f f a a c G E t G t f   (7) (6) (7) Where, f E is the elastic modulus of the FRP plate, ft is the thickness of the CFRP plate, and a G is the shear modulus of the adhesive layer, and at is the thickness of the adhesive layer, s is the local slip, cf is the compressive strength of concrete. Where, f E is the elastic modulus of the FRP plate, ft is the thickness of the CFRP plate, and a G is the shear modulus of the adhesive layer, and at is the thickness of the adhesive layer, s is the local slip, cf is the compressive strength of concrete. The width, height and length of the concrete specimen are 150mm, 150mm and 300mm separately. The width of CFRP plate is 50mm, the bond length is 200mm, and the 3 Finite element model The width of CFRP plate is 50mm, the bond length is 200mm, and the 3 MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 https://doi.org/10.1051/matecconf/201814202001 loading end has 50mm from nonbonding zone. In the paper, the concrete model is made of solid element, and the element type is chosen as the C3D8R unit with 3D eight nodes which are reduced integration element. In the entire model from stress to failure, CFRP are in the small strain condition. For convergence and convenience of the model, the CFRP plate can regard as a linear elastic material. It does not distinguish between fiber and resin, and uses the equivalent elastic modulus for modeling. The adhesive layer takes COH3D8 unit as cohesive element with 3D eight nodes. The material parameters which are used for the model are shown in table 1. Parameters of specimen and ultimate bearing capacity calculated are shown in table 2. Table 2. Parameters of specimens and numerical ultimate bearing capacity Specimen number CFRP plate thickness (mm) Adhesive layer thickness (mm) Interface initial stiffness (MPa/mm) Maximum shear stress (MPa) Interfacial failure energy (J) Numerical ultimate bearing capacity(kN) F1-1 1 1 119.71 6.69 1080 33.55 F1-2 1 2 48.15 4.80 1378 34.22 F1-3 1 3 28.26 3.95 1590 32.67 F1-4 1 4 19.37 3.44 1759 29.88 F1.4-1 1.2 1 129.74 6.99 1088 39.11 F1.4-2 1.2 2 52.18 5.01 1389 39.09 F1.4-3 1.2 3 30.63 4.12 1602 35.98 F1.4-4 1.2 4 20.99 3.59 1773 32.45 F2-1 2 1 141.28 7.33 1097 46.66 F2-2 2 2 56.83 5.25 1400 44.50 F2-3 2 3 33.35 4.32 1615 39.43 F2-4 2 4 22.86 3.76 1787 34.80 Table 2. Parameters of specimens and numerical ultimate bearing capacity 5 Summary In the paper, the numerical analysis had been carried out on interfacial performance of CFRP-concrete with the CFRP plate thickness 1mm, 1.4mm, 2mm and adhesive thickness 1mm, 2mm, 3mm and 4mm, the following conclusions are obtained: g 1)The thicknesses of adhesive layer and CFRP plate have a significant effect on the interfacialperformance of CFRP-concrete. 2)The ultimate bearing capacity of the interface increases generally as the thickness of the adhesive layer decreases and as the thickness of the CFRP plate increases. Its maximum value can be obtained when the plate thickness is around 2.0mm and adhesive layer thickness is around 1.5mm 2)The ultimate bearing capacity of the interface increases generally as the thickness of the adhesive layer decreases and as the thickness of the CFRP plate increases. Its maximum value can be obtained when the plate thickness is around 2.0mm and adhesive layer thickness is around 1.5mm 3)The increase of the thickness of adhesive layer and CFRP plate leads to the increase of the interfacial effective bond length evidently. 3)The increase of the thickness of adhesive layer and CFRP plate leads to the increase of the interfacial effective bond length evidently. This research was financially supported by Natural Science Foundation of Heilongjiang Province of China(NO:E201415) and the Fundamental Research Funds for the Central Universities of China (No.GK2020260143). This research was financially supported by Natural Science Foundation of Heilongjiang Province of China(NO:E201415) and the Fundamental Research Funds for the Central Universities of China (No.GK2020260143). (No.GK2020260143). MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 https://doi.org/10.1051/matecconf/201814202001 Fig. 3 exhibits the variation of strain values on the CFRP plate with ultimate bearing capacity. It is demonstrates that the maximum strain in the plates decrease as the thickness of plate increases.Fig. 3(a) shows that the maximum strain of the four specimens has little difference when the thickness of the CFRP plate is 1mm. The flat segments on the strain curve mean that the bond length of the two specimens is greater than the effective bond length when tf=1mm and tf=2mm. It explains why the trend of the interfacial ultimate bearing capacity goes flatly when tf≤2mm. In Fig.3(c), the maximum strain of the four curves decreases with the increase of the adhesive layer, and only the curve with the adhesive layer of 1mm has a horizontal section. The above results show that the increase of the adhesive layer thickness leads to the increase of the interfacial effective bond length. y g Fig. 4 gives the strain distribution of the CFRP plates with different thickness. The lengths of flat segment are 50mm, 45mm and 30mm for ta=1mm, ta=1.2mm and ta=1.4mm respectively shown in Fig. 4(a). It indicates that the effective bond lengths of the three specimens are 150mm, 155mm and 170mm respectively when tf=1mm. Fig. 4(b) and Fig. 4(c) show that lengths of the flat segments become short and disappear finally. It is found that the effective bond length increases with the increase of plate thickness. This corresponds to the trend of the curve in Fig. 2. y g Fig. 4 gives the strain distribution of the CFRP plates with different thickness. The lengths of flat segment are 50mm, 45mm and 30mm for ta=1mm, ta=1.2mm and ta=1.4mm respectively shown in Fig. 4(a). It indicates that the effective bond lengths of the three specimens are 150mm, 155mm and 170mm respectively when tf=1mm. Fig. 4(b) and Fig. 4(c) show that lengths of the flat segments become short and disappear finally. It is found that the effective bond length increases with the increase of plate thickness. This corresponds to the trend of the curve in Fig. 2. 4 Results analysis and discussion 4 Results analysis and discussion 4.1 Analysis of ultimate bearing capacity (a) (b) ity 4.1 Analysis of ultimate bearing capacity y g p (a) (b) (a) 4 https://doi.org/10.1051/matecconf/201814202001 MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 (c) Fig. 2. Ultimate bearing capacity of interface with different thickness of adhesive layer and CFRP (c) (c) Fig. 2. Ultimate bearing capacity of interface with different thickness of adhesive layer and CFRP In Fig. 2 and table 2, it is shown that the thickness of the adhesive layer and CFRP plate have a great influence on the interfacial ultimate bearing capacity. The ultimate bearing capacity of the interface increases generally as the thickness of the adhesive layer decreases and as the thickness of the CFRP plate increases.Fig. 2(a) shows that the ultimate bearing capacity of 1mm CFRP plate increases firstly and then decreases with the increase of the adhesive layer thickness, and reaches the maximum around 2.0mm. However, it is almost flat for 1.4mm CFRP plate and goes down for 2.0mm CFRP plate. Fig. 2 (b) shows that the ultimate bearing capacity increases with the increase of the plate thickness.When the adhesive layer thickness is 1mm and 2mm, the interfacial ultimate bearing capacity increases with the increase of the plate thickness, which is obviously greater than that of the adhesive layer at 3mm and 4mm. Its maximum value can be obtained when the plate thickness is around 2.0mm and adhesive layer thickness is around 1.5mm as shown in Fig. 2 (c). 4.2 Distribution of strain in CFRP plates and adhesive layers (a) ta=1mm (b) ta=1.4mm (c) ta=2mm Fig.3. Strain distribution in CFRP plates (a)tf=1mm (b) tf=2mm (c) tf=4mm Fig.4. Strain distribution in adhesive layers 4.2 Distribution of strain in CFRP plates and adhesive layers (a) ta=1mm (b) ta=1.4mm (c) ta=2mm 4.2 Distribution of strain in CFRP plates and adhesive layers in CFRP plates and adhes (b) ta=1.4mm ive layers (c) ta=2mm (a) ta=1mm (b) ta=1.4mm (a) ta=1mm (c) ta=2mm Fig.3. Strain distribution in CFRP plates Fig.3. Strain distribution in CFRP plates plates (b) tf=2mm (c) tf=4mm g (a)tf=1mm (a)tf=1mm (c) tf=4mm (b) tf=2mm Fig.4. Strain distribution in adhesive layers 5 5 MATEC Web of Conferences 142, 02001 (2018) ICMAE2017 References 1. Guo Zhanggen, Sun Weimin, Zhen Zhen. Journal of Nanjing University of Technology (Family Science Edition). 28,37 (2006) 2. Peng Hui, Gao Yong, Xie Chao, et al. Experimental mechanics. 29,489 (2014) 3. Ma Tao, Pan Jinlong, Wei Hongli. Building Structure. 19,15 (2013) 4. Lubliner J, Oliver J, Oller S, et al. International Journal of Solids and Structures. 25,299 (1989) 5. Lee J, Fenves G L. Journal of Engineering Mechanics. 124,892 (1998) 6. ABAQUS analysis user’s manual v6.14 (ABAQUSInc, 2014) 7. Täljsten B. Springer (2014) 8. Peng Hui, Gao Yong, Xie Chao, et al. Experimental mechanics. 29,489 (2014) 6
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Biodiversity Observations (2023) 13: 301-305 Biodiversity Observations (2023) 13: 301-305 Tippett & Underhill: Extreme weather and birds Abstract At 01h00 on 26 September 2022, on the farm Rietaar (30.82°S, 22.37°E), near Carnarvon in the Northern Cape, South Africa, a wind suddenly started blowing. Immediately after the wind arrived, birds were flung from their roosts in farmyard trees and smashed against the windows, walls and roof of the farmhouse. A gust of wind forced open one of the farmhouse windows and many birds were driven into the house; these included approximately six Cape Sparrows Passer melanurus, 10 Red-billed Queleas Quelea quelea, two Wattled Star- lings Creatophora cinerea, a Familiar Chat Oenanthe familiaris and a Red-headed Finch Amadina erythrocephala. Many of these were re- leased. The wind eased markedly after about one hour. Extreme weather events are predicted to occur with increasing fre- quency as a result of global climate change. These extremes take multiple forms. This note reports an abnormal weather event in which winds, apparently Force 10 on the Beaufort Scale (90‒100 km/hour), killed hundreds of birds at a farmhouse in the Karoo, South Africa. The wind was so strong that it removed birds from their roosts in trees and flung them against the walls of the farmhouse with such force that it killed them. There are no published accounts of comparable events in southern Africa. Biodiversity and Development Institute, 25 Old Farm Road, Ron- debosch 7700, South Africa *les@thebdi.org Biodiversity and Development Institute, 25 Old Farm Road, Ron- debosch 7700, South Africa *les@thebdi.org There are documented examples in southern Africa of most catego- ries of extreme weather-related events which impacted birds (Table 1). This short note describes an event which appears not to have been previously described in this region, in which birds were killed as a result of strong winds. Powerful wind kills hundreds of birds Ryan M Tippett & Les G Underhill Tippett RM, Underhill LG 2023. Powerful wind kills hundreds of birds. Biodiversity Observations 13: 301–305. 18 December 2023 DOI: 10.15641/bo.1498 Ryan M Tippett & Les G Underhill Tippett RM, Underhill LG 2023. Powerful wind kills hundreds of birds. Biodiversity Observations 13: 301–305. 18 December 2023 DOI: 10.15641/bo.1498 Tippett & Underhill: Extreme weather and birds Biodiversity Observations (2023) 13: 301-305 placed along a continuum, from those which last a few minutes to those which last months, years or even decades. Examples of ex- treme events along this continuum, ordered by duration, include tor- nados, hail storms, tropical storms, excessively hot days, overnight freezing weather, hurricanes, floods, heavy snowfalls, heat waves lasting days to a week and droughts. Many of these events are ex- treme in the context of the season of the year in which they occur. Cli- mate change, which underlies the short- and medium-term variability, is associated with long term trends, generally of increasing tempera- ture, decreasing precipitation and sea level rise. Although not a weather event per se, sea level rise is associated with climate change through the melting of ice in the polar ice caps and glaciers at all lati- tudes. Powerful wind kills hundreds of birds Ryan M Tippett & Les G Underhill* Introduction At dawn, it was possible to examine the trail of destruction. A large Pinus tree in the farmyard had been ripped out of the ground (Figure 1). There were no instruments to measure windspeed, but the uproot- ed tree suggests that the wind was Force 10 on the Beaufort Scale, Pinus tree in the farmyard had been ripped out of the ground (Figure 1). There were no instruments to measure windspeed, but the uproot- ed tree suggests that the wind was Force 10 on the Beaufort Scale, One of the predictions of global climate change is an increase in ex- treme weather events (Cohen et al. 2021). Extreme events can be 301 Biodiversity Observations (2023) 13: 301-305 Tippett & Underhill: Extreme weather and birds t Species impacted Description Reference 14 bird species Air temperature reached 45°C during mid-afternoon on 8 November 2020 in northern KwaZulu-Natal. 110 dead birds found were likely to be a small proportion of total. McKechnie et al. 2021 rge African Oystercatcher Haematopus moquini Nests destroyed on Robben Island in unseasonal storm event. All 20 nests on the island were lost on 17 February 2003. A similar event took place on 19 January 2022, when 38 nests were washed away. Calf & Underhill 2005; Itxaso Quintana pers. comm. Red-headed Quelea Quelea erythrops Two days of rain and gale force winds in late December 1997 caused the queleas to de- sert, although nests were intact. The colony was at Hayfields, Pietermaritzburg, KwaZulu- Natal. Brown & Symes 2004 ther Barn Swallow Hirundo rusti- ca, Greater Striped Swallow Cecropis cucullata, Rock Martin Ptyonoprogne fuligu- la, Common House Martin Delichon urbicum At the end of a period of cold and wet weather near Cape Town between 9 and 13 April 1953, at least 100 hirundinids died. Broekhuysen 1953; MacLeod et al. 1953 ther Barn Swallows, Common House Martins Cold snap (8°C) and heavy rain (40 mm) during arrival period of these migrant hirundi- nids killed hundreds of birds between 9 and 12 November 1968 at Hammanskraal, with further records of deaths as far south as the Free State. Skead & Skead 1970 ther Common Swifts In early December 2019, during an unseasonable cold and wet period, Common Swifts roosting under a roof at Mabalingwe Nature Reserve, Limpopo Province, South Africa, died. Rabie et al. which is associated with windspeeds of 90 to 100 km/hour and de- scribed as a storm (e.g. https://www.metoffice.gov.uk/weather/guides/ coast-and-sea/beaufort-scale). The perimeter of the house and the barn and the areas underneath trees were littered with hundreds of dead birds. All had presumably been bashed against the walls, roof and tree branches. There was a small number of injured birds. Many of the dead birds were found in contorted positions with traces of blood around the head, face and eyes. The farmyard spans a large area, and it was not feasible to ob- tain an accurate count of the numbers of dead birds, but the estimat- ed total was in the hundreds. Red-billed Queleas accounted for an estimated 80 to 90% of the casualties. Other species recorded dead included Laughing Dove Spilopelia senegalensis, Ring-necked Dove Streptopelia capicola, Southern Masked Weaver Ploceus velatus, Wattled Starling, Orange River White-eye Zosterops pallidus, Red- headed Finch, African Red-eyed Bulbul Pycnonotus nigricans, Cape Sparrow, Cape Robin-chat Cossypha caffra, Dusky Sunbird Cinnyris fuscus, Fiscal Flycatcher Melaenornis silens, Black-throated Canary Crithagra atrogularis and Lark-like Bunting Emberiza impetuani. It is likely that other species were killed as well. We asked whether neighbouring farms had experienced the same wind intensity as Rietaar; the answer was negative, and there were no reports of birds killed on neighbouring farms during the night of 25‒26 September 2022. Introduction 2023 Hirundinids, swifts, and other species in smaller numbers There was an “unprecedented” cold spell across Zimbabwe during the first half of No- vember 1968, accompanied by drizzle. Barn swallows, which would have been recent arrivals on migration, were particularly impacted. The main cause of death was starva- tion; aerial foragers became emaciated. Steyn & Brooke 1971 African Palm Swifts Cyp- siurus parvus Cold air temperatures (minimum 4.6°C) and persistent drizzle between 13 and 22 June 1979 caused deaths of swifts at four localities in Zimbabwe. A similar event in early Sep- tember 1981 killed 90 swifts in Bulawayo (minimum temperature 5.4°C). Donnelly 1982 Amur Falcon Falco amuren- sis Roosting flocks of Amur falcons were killed/injured on 9 and 21 March 2019 at nocturnal roost trees at Mooi River (700 killed, 1000 injured) and at Newcastle (1000 killed and 900 injured), 160 km apart in KwaZulu-Natal. Allan 2019 Village Weaver Ploceus cu- cullatus The water level in the Ngotwane Dam, Gaberone, Botswana, rose overnight on 17‒18 March 1991, submerging nests under 2 m of water. Pedersen 1991 Common Ostrich Struthio camelus Estimated that 252 ostriches, 10% of total population, died during a drought in 1985 in the Kgalagadi Transfrontier Park. Knight 1995 ds Multiple species Hundreds of birds killed. This paper Table 1: A selection of weather-related events in southern Africa which have impacted birds. 302 Biodiversity Observations (2023) 13: 301-305 Tippett & Underhill: Extreme weather and birds Biodiversity Observations (2023) 13: 301-305 y ( ) Figure 1: Uprooted tree at farm Rietaar, indicating Beaufort Scale allocation. which is associated with windspeeds of 90 to 100 km/hour and de- scribed as a storm (e.g. https://www.metoffice.gov.uk/weather/guides/ coast-and-sea/beaufort-scale). Discussion The farmyards scattered across the Karoo each have a cluster of trees, mostly Eucalyptus and Pinus. These clusters of trees have be- come of great importance to birds in the region. At Rietaar, they are used as overnight roosts by large numbers of birds (Ryan Tippett pers. obs). Figure 1: Uprooted tree at farm Rietaar, indicating Beaufort Scale allocation. In the compilation of Table 1, we favoured the inclusion of recent events over older ones. It is striking that many of these describe 303 Biodiversity Observations (2023) 13: 301-305 Biodiversity Observations (2023) 13: 301-305 Tippett & Underhill: Extreme weather and birds y ( ) Figure 2: A sample of birds killed by the windstorm at farm Rietaar. Northern Cape, South Africa. events taking place more than 25 years ago, before global climate change was widely recognised as a threat. It is possible that more re- cent events have not been reporting because there are already simi- lar results published in the literature. events taking place more than 25 years ago, before global climate change was widely recognised as a threat. It is possible that more re- cent events have not been reporting because there are already simi- lar results published in the literature. In particular, it seems there have been no reports of mass mortalities of barn swallows in more than half a century since 1968 (Skead & Skead 1970, Steyn & Brooke 1971). The November 1968 event was widespread; from Skead & Skead (1970) and Steyn & Brooke (1971) it is clear that the period of cold and damp whether caused mortalities of barn swallows over Zimbabwe, part of Botswana, and over north- ern South Africa as far south as Kimberley and as far east as Zulu- land. The impact of this widespread weather event appears to have been magnified by the fact that it took place simultaneously with the arrival of barn swallows on migration, at a time when many are need- ing to recover body condition after long flights (Skead & Skead 1970). This juxtaposition of events is probably rare. Especially in the light of global climate change, weather-related mor- tality events of birds and other taxa ought to be routinely reported. This would facilitate a review of their frequency of occurrence. This journal (Underhill & Navarro 2023) provides a platform for this catego- ry of observations; Rabie et al. Discussion (2023) is an example of such a report. Acknowledgements H. Dieter Oschadleus assisted with the literature review for Table 1. Karis Daniel commented on the text. References Allan D 2019. Annihilation: storms wreak havoc on Amur Falcons. African Birdlife 7(5): 22‒24. Broekhuysen GJ 1953. A post mortem of the Hirundinidae which perished at Somerset West in April 1953. Ostrich 24: 148‒152. Figure 2: A sample of birds killed by the windstorm at farm Rietaar. Northern Cape, South Africa. Figure 2: A sample of birds killed by the windstorm at farm Rietaar. Northern Cape, South Africa. 304 Biodiversity Observations (2023) 13: 301-305 Tippett & Underhill: Extreme weather and birds Brown M, Symes CT 2004. Nesting of Red-headed quelea (Quelea erythrops) in KwaZulu-Natal, South Africa. Ostrich 75: 159‒161. Steyn P, Brooke RK 1971. Cold induced mortality of birds in Rhode- sia during November 1968. Ostrich Supplement 8: 271‒282. Steyn P, Brooke RK 1971. Cold induced mortality of birds in Rhode- sia during November 1968. Ostrich Supplement 8: 271‒282. Steyn P, Brooke RK 1971. Cold induced mortality of birds in Rhode- sia during November 1968. Ostrich Supplement 8: 271‒282. Calf KM, Underhill LG 2005. Tidal impact on breeding African Black Oystercatchers on Robben Island, Western Cape, South Africa. Ostrich 76: 219–221. Underhill LG, Navarro R 2023. The open-access journal Biodiversity Observations: report for the period 2010‒2022. Biodiversity Ob- servations 13: 1‒6. Underhill LG, Navarro R 2023. The open-access journal Biodiversity Observations: report for the period 2010‒2022. Biodiversity Ob- servations 13: 1‒6. Cohen JM, Fink D, Zuckerberg B 2021. Extreme winter weather dis- rupts bird occurrence and abundance patterns at geographic scales. Ecography 44: 1143‒1155. Paper edited by Megan Loftie-Eaton Biodiversity and Development Institute Paper edited by Megan Loftie-Eaton Biodiversity and Development Institute Donnelly BG 1982. Cold induced mortality in African Palm Swifts. Honeyguide, 111/112: 15‒17. Knight MH 1985. Drought-related mortality of wildlife in the southern Kalahari and the role of man. African Journal of Ecology 33: 377‒394. MacLeod JGR, Murray Cd’C, Murray EM 1953. Death of many mi- grants at Somerset West. Ostrich 24: 118‒120. McKechnie AE, Rushworth IA, Myburgh F, Cunningham SJ 2021. Mortality among birds and bats during an extreme heat event in eastern South Africa. Austral Ecology 46: 687‒691. Biodiversity Observations is powered by Open Journal Systems (OJS) and is hosted by the University of Cape Town Libraries. OJS is an open source software application for managing and publishing scholarly journals. References Developed and released by the Public Knowledge Project in 2001, it is the most widely used open source journal publishing platform in existence, with over 30,000 journals using it worldwide. Petersen SE 1991. Spottedbacked Weaver Ploceus cucullatus breeding at Gaborone Dam. Babbler 21 & 22: 74‒76. Rabie E, Rabie C, Oschadleus HD 2023. Impact of cold and wet weather on Common Swifts Apus apus (with comments). Biodi- versity Observations 13: 140–141. Skead DM, Skead CJ 1970. Hirundinid mortality during adverse weather, November 1968. Ostrich 41: 247‒251. 305
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Barriers to and facilitators of implementing complex workplace dietary interventions: process evaluation results of a cluster controlled trial
BMC health services research
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Fitzgerald et al. BMC Health Services Research (2016) 16:139 DOI 10.1186/s12913-016-1413-7 Fitzgerald et al. BMC Health Services Research (2016) 16:139 DOI 10.1186/s12913-016-1413-7 Open Access © 2016 Fitzgerald et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Barriers to and facilitators of implementing complex workplace dietary interventions: process evaluation results of a cluster controlled trial Sarah Fitzgerald*, Fiona Geaney, Clare Kelly, Sheena McHugh and Ivan J. Perry * Correspondence: sarahfitzgerald@ucc.ie Department of Epidemiology and Public Health, University College Cork, 4th Floor, Western Gateway Building, Western Road, Cork, Ireland Background restricting options and provision of real incentives (i.e. price discounts) [14, 23]. These complex high-intensity interventions are informed by empirical evidence and theories and have a multi-level approach where they are specifically developed to target all stakeholders within an organisation (e.g. employers, caterers, employees) [7]. g The increasing prevalence of diet-related diseases is a major global public health problem. The growing burden on population health and unsustainable cost escalation is crippling healthcare systems worldwide [1–4]. The causal factors of diet-related diseases are inherently complex and require complex solutions [5]. Behavioural interventions aim to improve dietary behaviours and reduce the associated burden of diet-related diseases at a population-level [6–8]. The Medical Research Council (MRC) advocate the importance of combining the evalu- ation of outcomes and processes when evaluating com- plex interventions [7]. Process evaluations monitor and evaluate the fidelity of interventions and can provide an in- depth understanding of factors that lead to the success or failure of implementing complex interventions [7, 9–11]. g ( g p y p y ) [ ] The available evidence on process evaluation of low- intensity workplace interventions has focused mainly on the effectiveness of interventions rather than on why in- terventions succeed or fail [24, 25]. The limited available evidence indicates that contextual factors, particularly structural and organisational changes can greatly influ- ence the implementation of workplace interventions [26–29]. Evidence further suggests that in order to suc- cessfully implement workplace healthy eating interven- tions, it is vital to secure engagement by the catering team. Securing this engagement requires the research team to provide substantial support and understanding to the catering team [23]. The complexities of the mod- ern working environment including on-going structural changes and competing work projects have also been in- dicated as factors that can impede intervention imple- mentation. In contrast, active involvement of managers in implementation, negotiation skills, consideration of workplace culture and assessing readiness for change can serve as facilitators of implementation [27]. It has also been suggested that ensuring there is transparency in the implementation plan regarding roles and respon- sibilities of each team member can help facilitate inter- vention implementation [11, 27]. Similarly, contextual factors were also identified as influential in the imple- mentation of a health promotion intervention in four Danish industrial canteens and structural changes which resulted in downsizing, high employee turnover and job insecurity impeded successful implementation [29]. Background g The workplace has been identified as an important health promotion setting as individuals spend long pe- riods of time in their work environments and it also al- lows targeted health promotion programmes reach specific population groups [2, 8, 12, 13]. The workplace provides access to a stable population in a controlled setting, making it conducive to the implementation of complex interventions [14]. However, uncertainty exists regarding the effectiveness of complex workplace dietary interventions. Previous interventions have demonstrated limited efficacy with small effect sizes [15–17]. Al- though, some studies have reported that workplace in- terventions can have moderate positive effects on dietary behaviour in terms of healthier food choices and increas- ing fruit and vegetable consumption [8, 16–20], significant uncertainty remains regarding the long-term effects on dietary behaviour, health status outcomes and cost- effectiveness [8, 17, 21]. These interventions failed to include detailed process evaluations but recommended that future workplace interventions should integrate rigor- ous qualitative and quantitative evaluation methods to ex- plore reasons for ambiguous findings [15–18, 22]. y p p There are a number of change theories and frame- works which describe the implementation of interven- tions within organisations. These theories suggest that fully understanding processes of change within organisa- tions is critical for the successful development and im- plementation of workplace health promotion initiatives [30, 31]. Lewin’s model of organisational change is one such theory and involves, unfreezing of current attitudes to change, implementing the new intervention and re- freezing new attitudes and behaviour by supporting and reinforcing change [32, 33]. This theory suggests that assessing organisational readiness for change and mini- mising the restraining factors of tacit organisational cultures are central for successful implementation of in- terventions and for achieving sustained change [30–33]. Schein’s theory on organisational change further sug- gests that in order to embed change, the intervention needs to become part of the culture of the organisation [31]. The principles of these theories are reinforced in Very few comprehensive process evaluations of work- place dietary interventions have been conducted. Fur- thermore, few studies explore the opinions of those directly involved in workplace dietary interventions ei- ther as a decision maker or a participant. The evidence base consists mainly of process evaluations that evaluate low-intensity workplace health promotion interventions or workplace stress interventions. Abstract Background: Ambiguity exists regarding the effectiveness of workplace dietary interventions. Rigorous process evaluation is vital to understand this uncertainty. This study was conducted as part of the Food Choice at Work trial which assessed the comparative effectiveness of a workplace environmental dietary modification intervention and an educational intervention both alone and in combination versus a control workplace. Effectiveness was assessed in terms of employees’ dietary intakes, nutrition knowledge and health status in four large manufacturing workplaces. The study aimed to examine barriers to and facilitators of implementing complex workplace interventions, from the perspectives of key workplace stakeholders and researchers involved in implementation. Methods: A detailed process evaluation monitored and evaluated intervention implementation. Interviews were conducted at baseline (27 interviews) and at 7–9 month follow-up (27 interviews) with a purposive sample of workplace stakeholders (managers and participating employees). Topic guides explored factors which facilitated or impeded implementation. Researchers involved in recruitment and data collection participated in focus groups at baseline and at 7–9 month follow-up to explore their perceptions of intervention implementation. Data were imported into NVivo software and analysed using a thematic framework approach. Results: Four major themes emerged; perceived benefits of participation, negotiation and flexibility of the implementation team, viability and intensity of interventions and workplace structures and cultures. The latter three themes either positively or negatively affected implementation, depending on context. The implementation team included managers involved in coordinating and delivering the interventions and the researchers who collected data and delivered intervention elements. Stakeholders’ perceptions of the benefits of participating, which facilitated implementation, included managers’ desire to improve company image and employees seeking health improvements. Other facilitators included stakeholder buy-in, organisational support and stakeholder cohesiveness with regards to the level of support provided to the intervention. Anticipation of employee resistance towards menu changes, workplace restructuring and target-driven workplace cultures impeded intervention implementation. Conclusions: Contextual factors such as workplace structures and cultures need to be considered in the implementation of future workplace dietary interventions. Negotiation and flexibility of key workplace stakeholders plays an integral role in overcoming the barriers of workplace cultures, structures and resistance to change. Trial registration: Current Controlled Trials: ISRCTN35108237. Date of registration: 02/07/2013 Keywords: Process evaluation, Implementation, Facilitators, Barriers, Workplace dietary intervention Page 2 of 13 Page 2 of 13 Fitzgerald et al. BMC Health Services Research (2016) 16:139 Background By design, low- intensity workplace health promotion interventions tend to focus solely on information provision and fail to in- vestigate the effects of environmental approaches, such as food modification [14]. In contrast, high-intensity in- terventions are complex in nature and typically consist of a number of different interacting components. These components can include both information provision and environmental approaches such as, food modification, Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 3 of 13 Page 3 of 13 intervention which comprised of three elements; group pre- sentations, individual nutrition consultations and the provision of detailed nutrition information (traffic light menu-labelling, posters, leaflets and emails). The third workplace received an environmental dietary modification intervention which consisted of five elements 1) menu modification (restriction of fat, saturated fat, sugar and salt), 2) increase in fibre, fruit and vegetables, c) price discounts for fresh fruit, d) strategic positioning of healthier alterna- tives and e) portion size control [21]. Table 1 outlines the allocation of the interventions. The intervention design was developed by the research team who had specific expertise in public health nutrition and dietetics and was advised by catering stakeholders (Catering Managers Association of Ireland (CMAI)). The research team collaborated with the workplace stakeholders (human resources (HR) and cater- ing managers) to implement the FCW interventions within each individual workplace. Each workplace was assigned a research workplace leader who was based on-site and col- laborated with the workplace stakeholders to co-ordinate data collection for rotating shift schedules and monitor ad- herence to the interventions. Implementation was moni- tored and evaluated in all four workplaces using a detailed process evaluation throughout the intervention period, ana- lysing perspectives of management stakeholders, participat- ing employees and research assistants. Steckler and Linnan’s conceptual framework guided the process evalu- ation and was based on the components of context, reach, dose delivered, dose received, fidelity and recruitment [9]. implementation frameworks which outline the enablers and barriers to successful implementation within organi- sations [34]. Stakeholder buy-in, organisational support, supportive organisational culture, monitoring and evalu- ation are defined as enablers of implementation. The ex- ternal environment, resistance to change and vested interests are outlined as barriers to implementation within organisations [34]. Methods Conte t The current study was carried out as part of the Food Choice at Work (FCW) study, a cluster controlled trial conducted in four large manufacturing workplaces in Cork, Ireland. Details of the FCW study have been pub- lished elsewhere [21]. Briefly, the FCW study assessed the comparative effectiveness of a workplace environ- mental dietary modification intervention and an educa- tional intervention both alone and in combination versus a control workplace on employees dietary behav- iours, nutrition knowledge and health status. Changes in employees’ dietary intakes and health status (BMI, waist circumference and blood pressure) outcomes were mea- sured at baseline, follow-up at 3–4 months and 7–9 months. As the focus of the FCW study was to imple- ment a complex dietary intervention in an environment that could tolerate different interacting intervention com- ponents, workplaces were purposively selected and allo- cated interventions. Workplaces were deemed eligible if they were manufacturing workplaces who employed more than 250 employees, had a daily workplace canteen, located in Cork, represented on the Industrial Develop- ment Authority of Ireland (IDA) website and were able to commit to all components of the complex intervention for the duration of the study [21]. In order to ensure that the participating workplaces and employees were repre- sentative of the general Irish workforce, demographic vari- ables of non-participating employees were examined. Background To improve the implementation of complex, high- intensity workplace dietary interventions and achieve sustainable organisational change, it is imperative that factors which facilitate and impede the implementation process are identified by exploring the opinions of those directly involved [9]. The aim of this study was to define and explore the facilitators of and barriers to the imple- mentation of complex, high-intensity workplace dietary interventions from the perspectives of key workplace stakeholders, participating employees and research assis- tants delivering the intervention. Participants For the process evaluation, purposive sampling was used to recruit management stakeholders who were involved in the intervention either through initial consultation, decision-making or on-going collaboration with the re- searchers who collected data. Employees who partici- pated in the intervention were selected using random number generation software. At baseline 27 face-to-face semi-structured interviews (13 managers and 14 employees) were conducted and 27 interviews (12 man- agers and 15 employees) were conducted post interven- tion implementation. Where feasible the same people were interviewed at follow-up stage, however this was dependent on availability of participants. Research assis- tants who conducted the interviews were involved in re- cruitment and data collection but were not known to the participants they interviewed. Table 2 outlines the characteristics of managers and employees who took part. Purposive sampling was used to recruit research as- sistants for the focus groups. All research assistants involved in the FCW study were invited to participate at baseline and at follow-up stage. Nine out of eleven research assistants took part at baseline and four out of six research assistants took part at follow-up. The reason In the control workplace, data was collected at base- line and at each stage of follow-up. Participants in this workplace were informed that they were involved in a university-led study to observe employees dietary behav- iours. The second workplace received a nutrition education Page 4 of 13 Fitzgerald et al. BMC Health Services Research (2016) 16:139 Table 1 Allocation of FCW interventions across the workplaces and description of interventions Workplace Intervention implemented Description of interventions Control (Food & beverage industry) Control site Monitored employees eating behaviours. Education (Health industry) Nutrition education intervention Nutrition education consisted of three elements: 1) monthly group presentations, 2) individual nutrition consultations and 3) detailed nutrition information (shopping cards, posters, leaflets and emails), including the application of a healthy eating traffic light cod system to daily menus and vending machines. This displayed the number of calories an nutritional breakdown of the meal or food item. Environmental (Automotive industry) Environmental dietary modification intervention Environmental dietary modification consisted of five elements: 1) restriction of fat, satura fat, sugar and salt, 2) increase fibre, fruit and vegetables, 3) price discounts on whole fre fruit, 4) strategic positioning of healthier alternatives and 5) portion size control. Combined (IT industry) Combined intervention All the elements of the nutrition education intervention and the environmental dietary modification intervention were implemented. Data collection Semi-structured face-to-face interviews were conducted at baseline between February and April 2013 and at follow-up stage between April and July 2014. Interviews were conducted in the workplaces and lasted between 40 and 60 min. The baseline focus group was conducted in May 2013 and the follow-up focus group was con- ducted post intervention implementation in August 2014. These were hosted in University College Cork by an independent moderator and lasted for 1 h. An assist- ant moderator took observational notes. In the inter- views and focus groups probes were used to initiate discussion when there was a pause and also to further explore points of interest. Topic guides A co-investigator involved in the FCW study developed semi-structured topic guides for the interviews and focus groups (Additional files 1, 2, 3, 4, 5 and 6). As previously outlined, Steckler and Linnan’s conceptual framework was used to guide the process evaluation plan. Thus, the topic guides were based on the six components of the framework; context, reach, dose delivered, dose received, fidelity and recruitment [9]. These topic guides were reviewed and refined by research assistants on the study. Pilot interviews that were conducted at baseline and at follow-up stage, overall study objectives, preliminary analysis of baseline data and researchers’ experience of intervention implementation further informed the topic guides. For the interviews, the topic guides were used to explore facilitators of and barriers to the implementation Participants Nutrition education consisted of three elements: 1) monthly group presentations, 2) individual nutrition consultations and 3) detailed nutrition information (shopping cards, posters, leaflets and emails), including the application of a healthy eating traffic light coding system to daily menus and vending machines. This displayed the number of calories and nutritional breakdown of the meal or food item. Environmental dietary modification consisted of five elements: 1) restriction of fat, saturated fat, sugar and salt, 2) increase fibre, fruit and vegetables, 3) price discounts on whole fresh fruit, 4) strategic positioning of healthier alternatives and 5) portion size control. All the elements of the nutrition education intervention and the environmental dietary modification intervention were implemented. of the interventions from the perspective of management stakeholders and employees. For the focus groups, the topic guides were used to explore the experiences of the research assistants delivering a complex intervention in the workplace. for non-participation in the focus groups was the part- time availability of research assistants and there were fewer researchers employed at follow-up stage. For the interviews, individuals were contacted by email and follow-up telephone call when necessary. The focus group moderator emailed research assistants and invited them to participate. All participants provided written in- formed consent. Data were digitally recorded and tran- scribed verbatim. To preserve confidentiality, data were anonymised. Analytical tools Both managers and employees highlighted the benefits of participating in the study. Managers had a desire to improve company image and foster employee loyalty while employees had a desire to improve their health. The perception of a long-term benefit rather than the benefit itself facilitated implementation in the short-term as it encouraged engagement and fostered buy-in. Verba- tim examples of this theme are included in Table 3. 1) Familiarisation: Three researchers (SF, FG and CK) conducted the interviews. Researchers became familiar with the data by re-reading transcripts, audio tapes, field notes and observational notes. Recurring themes and initial ideas were noted in an analytical memo. y The perception of a long-term benefit rather than the benefit itself facilitated implementation in the short-term as it encouraged engagement and fostered buy-in. Verba- tim examples of this theme are included in Table 3. 1. Concern with company image: Managers had a vested interest in ensuring successful implementation of the interventions as they had a strong desire to portray a positive company image to both industry and employees. Managers believed that participation in the study would be a means of achieving this objective. Managers wanted to depict an image of a progressive company both nationally and internationally in the manufacturing industry. This desire facilitated implementation as managers were supportive of the interventions and they facilitated access to employees by releasing them from work activities to attend study appointments. Managers felt involvement in a university-led study would be regarded as presti- gious by other companies. They expressed pride in being ‘chosen’ to participate and believed that it created a sense of elitism in the manufacturing industry. According to some of the researchers who collected data, a concern with company image motivated workplace stakeholders to pro- vide recruitment and implementation support. 2) Identification of a thematic framework: Four researchers (SF, SMH, FG and CK) undertook initial coding of a selection of transcripts (one management stakeholder and one employee participant). These were subject to inter-coder reli- ability as one of the researchers (SMH) was not in- volved in data collection. Open coding allowed for an inductive approach. The preliminary coding framework was developed by discussing the conver- gence and divergence of codes. The researchers redefined this framework for subsequent stages of coding. 3) Indexing: This stage involved the indexing of specific parts of the data to correspond to the emerging themes. Analytical tools The framework approach was used for analysis of data [9, 35]. This was considered appropriate as the process evaluation had pre-specified objectives while it also per- mitted the emergence of unexpected themes. Framework analysis is dynamic, allowing for change throughout the Table 2 Characteristics of baseline and follow-up interviews conducted with managers and employees Managers Employees Workplace Baseline Follow-up at 7–9 months Baseline Follow-up at 7–9 months Control 2 (Occupational health and administrative managers) 3 (Occupational health and HR managers) 4 (2 male and 2 female) 4 (2 male and 2 female) Education 3 (Occupational health, HR and catering managers) 3 (Occupational health, HR and catering managers) 3 (2 female and 1 male) 4 (3 male and 1 female) Environmental 4 (Managing director, HR and catering managers) 3 (Managing director, HR and catering managers) 4 (2 female and 2 male) 4 (2 male and 2 female) Combined 4 (Occupational health and catering managers) 3 (Occupational health and catering managers) 3 (1 female and 2 male) 3 (1 male and 2 female) Table 2 Characteristics of baseline and follow-up interviews conducted with managers and employees Managers Employees Workplace Baseline Follow-up at 7–9 months Baseline Follow-up at 7–9 months Control 2 (Occupational health and administrative managers) 3 (Occupational health and HR managers) 4 (2 male and 2 female) 4 (2 male and 2 female) Education 3 (Occupational health, HR and catering managers) 3 (Occupational health, HR and catering managers) 3 (2 female and 1 male) 4 (3 male and 1 female) Environmental 4 (Managing director, HR and catering managers) 3 (Managing director, HR and catering managers) 4 (2 female and 2 male) 4 (2 male and 2 female) Combined 4 (Occupational health and catering managers) 3 (Occupational health and catering managers) 3 (1 female and 2 male) 3 (1 male and 2 female) cs of baseline and follow-up interviews conducted with managers and employees Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 5 of 13 Page 5 of 13 Page 5 of 13 analytical process while its systematic nature provides transparency. This was beneficial as multiple researchers were involved in data collection, analysis and interpret- ation. The following steps were completed [9]: Perceived benefits of participation Both managers and employees highlighted the benefits of participating in the study. Managers had a desire to improve company image and foster employee loyalty while employees had a desire to improve their health. Analytical tools Data was imported into NVivo software (QSR International Pty Ltd) for coding. The refined coding framework was systematically applied to the data and the main thematic categories and sub- categories were formed. appointments. Managers felt involvement in a university-led study would be regarded as presti- gious by other companies. They expressed pride in being ‘chosen’ to participate and believed that it created a sense of elitism in the manufacturing industry. According to some of the researchers who collected data, a concern with company image motivated workplace stakeholders to pro- vide recruitment and implementation support. 4) Charting: The coded data was further abstracted and synthesised during the charting process by two of the researchers. This involved arranging themes into illustrative charts based on headings included in the thematic framework. 2. 2. Managers’ personal interest: In some workplaces key workplace stakeholders expressed a personal interest in maintaining a healthy lifestyle. Occupational health stakeholders in the control and combined workplaces had a professional background in nursing and had great interest in supporting initiatives that would enhance health consciousness in the workplace. Similarly in the education workplace, a HR stakeholder had professional training and interest in nutritional sciences. This interest was a driver for workplace participation and ensured that implementation of the interventions received organisational support. 2. Managers’ personal interest: In some workplaces key workplace stakeholders expressed a personal interest in maintaining a healthy lifestyle. Occupational health stakeholders in the control and combined workplaces had a professional background in nursing and had great interest in supporting initiatives that would enhance health consciousness in the workplace. Similarly in the education workplace, a HR stakeholder had professional training and interest in nutritional sciences. This interest was a driver for workplace participation and ensured that implementation of the interventions received organisational support. 5) Mapping and interpretation: The charts provided a schematic diagram of the process evaluation which guided data interpretation. Interpretations were checked and discussed by two researchers. The interpretation of the themes was guided by the specific objectives of the study and also by the unexpected themes that emerged during analysis. 5) Mapping and interpretation: The charts provided a schematic diagram of the process evaluation which guided data interpretation. Interpretations were checked and discussed by two researchers. The interpretation of the themes was guided by the specific objectives of the study and also by the unexpected themes that emerged during analysis. Major themes 3.Fostering employee loyalty: “If you’re trying to convince employees that you’re interested and trying to engage with them, show them that you care about their health and well-being so that’s a good engagement tool” (Occupational health, nutrition education site—baseline stage). “If we can keep our employees healthy, they’ll be happier, they’ll produce better work, they’ll hit their efficiencies a lot better and they’re more likely to be in here” (HR, nutrition education site—follow-up stage). 4. Health concerns among employees: “We don’t have the luxury in this modern day and age of getting to 54, in days of old you’d get to this age and you pull back a little, there’s young and progressive people coming up underneath you and they take the pressure and that, that doesn’t happen today. They are going to work people until they’re 65” (Employee, nutrition education site—follow-up stage). 1. Flexibility: The flexibility and adaptability of the researchers manifested itself in a number of ways. To facilitate timely data collection, it was critical for the researchers to adapt to the structure and practices of each worksite. Researchers were required to schedule appointments that complemented rotating shift patterns. Similarly, monthly group nutrition presentations were delivered multiple times each day to also complement rotating shifts. Data collection often occurred during busy times on site such as ‘end of quarter’. On these occasions, employees frequently rescheduled appointments and researchers had to facilitate these late changes. At the outset, managers were concerned that the target-driven culture of manufacturing workplaces would not be suitable for implementing a study that requires employee inter- action and significant logistical planning. However, researchers’ adaptability to changes facilitated implementation. would foster employee loyalty and boost morale within the workplace which could result in financial benefits for the company by reducing absenteeism and increasing productivity. It was anticipated that this could be achieved by managers promoting participation in elements such as the healthy-eating group presentations. g p p 4. Health concerns among employees: The main reasons for employees participating included age concerns, individual health concerns (weight, cholesterol level, blood pressure, and digestive disorders) and lifestyle concerns. Older participating employees felt pressure to keep up with younger employees in their fast-paced working environments. Employees were seeking health improvements in an effort to curtail any negative effects of ageing and the need to ‘slow down’ their working pace. Major themes 3. g 3. Fostering employee loyalty: A desire to improve relations between employers and employees was a motivating factor for participation. Managers identified the study as an opportunity to improve relations with employees. In order to demonstrate their support for the study to employees, they released staff from work activities for appointments and provided resources for the study. They believed that driving health consciousness among employees 3. Fostering employee loyalty: A desire to improve relations between employers and employees was a motivating factor for participation. Managers identified the study as an opportunity to improve relations with employees. In order to demonstrate their support for the study to employees, they released staff from work activities for appointments and provided resources for the study. They believed that driving health consciousness among employees Four major themes emerged; 1) perceived benefits of par- ticipation, 2) negotiation and flexibility of the implementa- tion team, 3) viability and intensity of intervention and 4) individual workplace structures and cultures. Depending on context, the latter three themes were found to have both a positive and negative impact on implementation and are discussed as either facilitators or barriers. Findings are presented from the perspective of management stake- holders, employees and research assistants. Page 6 of 13 Fitzgerald et al. BMC Health Services Research (2016) 16:139 Table 3 Theme of ‘perceived benefits of participation’ and verbatim examples Theme Verbatim Examples Perceived benefits of participation 1. Concern with company image: “We were one of the ones to be chosen, that’s a huge cannon feather in our cap you know we’re thrilled about that and you know again to promote the fact that it’s not everybody that was selected….we were chosen as a company for a particular reason and we’re honoured to be included” (HR manager, Environmental site—follow-up stage). 2. Managers’ personal interest: “I would have been the person who pushed it to say ‘let’s go and do this, it’s an opportunity, yeah’… having dieticians on site, having access to all this expertise you know, and it is a great pile of health promotion going on in the background” (Occupational health, Control site—follow up stage). 3.Fostering employee loyalty: “If you’re trying to convince employees that you’re interested and trying to engage with them, show them that you care about their health and well-being so that’s a good engagement tool” (Occupational health, nutrition education site—baseline stage). Major themes Employees appreciated the investment their employers made in the study as it provided them with a unique opportunity to have a nutritional consultation and a free health check-up during their working hours. It reassured employees that their employer concerns went beyond generating profit hence they felt obliged to participate. p 2. Negotiation: The researchers also perceived negotiation as central to successful implementation. It was necessary for the researchers to negotiate a level of change that was agreeable to mangers, caterers and the researchers themselves. In some instances this resulted in changes to the planned intervention components or the scale of change. Effective communication with managers was necessary to reach a compromise with regards to what intervention elements were implemented and to what degree they were implemented, particularly for the environmental modification intervention. For example, the proposed portion size restrictions were heavily negotiated between the researchers and catering staff with compromises being made by all parties. Willingness to change among catering staff 2. Major themes “If we can keep our employees healthy, they’ll be happier, they’ll produce better work, they’ll hit their efficiencies a lot better and they’re more likely to be in here” (HR, nutrition education site—follow-up stage). 4. Health concerns among employees: “We don’t have the luxury in this modern day and age of getting to 54, in days of old you’d get to this age and you pull back a little, there’s young and progressive people coming up underneath you and they take the pressure and that, that doesn’t happen today. They are going to work people until they’re 65” (Employee, nutrition education site—follow-up stage). Theme Verbatim Examples Perceived benefits of participation 1. Concern with company image: “We were one of the ones to be chosen, that’s a huge cannon feather in our cap you know we’re thrilled about that and you know again to promote the fact that it’s not everybody that was selected….we were chosen as a company for a particular reason and we’re honoured to be included” (HR manager, Environmental site—follow-up stage). 2. Managers’ personal interest: “I would have been the person who pushed it to say ‘let’s go and do this, it’s an opportunity, yeah’… having dieticians on site, having access to all this expertise you know, and it is a great pile of health promotion going on in the background” (Occupational health, Control site—follow up stage). 3.Fostering employee loyalty: “If you’re trying to convince employees that you’re interested and trying to engage with them, show them that you care about their health and well-being so that’s a good engagement tool” (Occupational health, nutrition education site—baseline stage). “If we can keep our employees healthy, they’ll be happier, they’ll produce better work, they’ll hit their efficiencies a lot better and they’re more likely to be in here” (HR, nutrition education site—follow-up stage). 4 Health concerns among employees: “We don’t have the luxury in this modern day and age of getting to 54 in days of old you’d . Managers’ personal interest: “I would have been the person who pushed it to say ‘let’s go and do this, it’s an opportunity, yeah’ aving dieticians on site, having access to all this expertise you know, and it is a great pile of health promotion going on in the ackground” (Occupational health, Control site—follow up stage). Flexibility and negotiation Enthusiasm of caterers towards the intervention further facilitated the progress of implementation. Support of the catering company in their workplace stemmed from caterers realising that involvement in the study could be a valuable learn- ing opportunity and serve as a foundation on which to enhance the knowledge of the catering staff. 1. Stakeholder buy-in: Employees recognised the importance of receiving ‘buy-in’ from catering and management stakeholders in order for the interven- tion to be successfully implemented. This was also highlighted by the researchers who acknowledged their flexibility and willingness to change as a crucial facilitating factor. Enthusiasm of caterers towards the intervention further facilitated the progress of implementation. Support of the catering company in their workplace stemmed from caterers realising that involvement in the study could be a valuable learn- ing opportunity and serve as a foundation on which to enhance the knowledge of the catering staff. 3. 3. High-level workplace management support: Due to the target-driven culture in the manufacturing in- dustry, supervisors were reluctant to release produc- tion staff to attend appointments. A disruption on the production line could lead to knock-on effects for overall site-level efficiencies. However, supervi- sors were instructed by managers to adapt to the demands of the intervention for the duration of the study period. To ensure that catering staff adhered to the intervention elements, management needed to reinforce the commitment that the workplace had made to the study. This was particularly evident in the environmental and combined workplaces, where environmental modification elements were imple- mented and more negotiation was needed in these workplaces. Stakeholder cohesiveness with regards to organisational support was central to achieving successful implementation. 3. High-level workplace management support: Due to the target-driven culture in the manufacturing in- dustry, supervisors were reluctant to release produc- tion staff to attend appointments. A disruption on the production line could lead to knock-on effects for overall site-level efficiencies. However, supervi- sors were instructed by managers to adapt to the demands of the intervention for the duration of the study period. To ensure that catering staff adhered to the intervention elements, management needed to reinforce the commitment that the workplace had made to the study. This was particularly evident in the environmental and combined workplaces, where environmental modification elements were imple- mented and more negotiation was needed in these workplaces. Stakeholder cohesiveness with regards to organisational support was central to achieving successful implementation. Flexibility and negotiation Negotiation: “Changing down to nearly half, we just couldn’t, there would be uproar…we did a taste test, we put three plates out one with what we serve now, one with what UCC wanted us to serve and something somewhere in the middle that we felt we could serve and get away with, that’s the way we made our choice” (Occupational health, combined intervention site baseline stage). “The breakfast option alright was something that you couldn’t change too much. I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it” (Researcher 2 - follow up stage) 3. High-level workplace management support: “I found it very, very hard to get product builders released for their sessions. That was a huge struggle for me, it’s the team leaders and they’re all about their metrics, they want to have, net efficiencies, be on target” (Occupational Health—nutrition education site—follow-up stage). and researcher negotiation skills facilitated compromises being reached. management were actively involved in the study, it en- couraged employee participation and secured more buy- in from production supervisors and team leaders. In the environmental workplace, the support of HR managers went beyond providing basic logistical support and HR contacts became involved in providing recruitment sup- port. Organisational restructuring and a ‘traditional’ work- place culture had a negative effect on implementation. Verbatim examples of this theme are included in Table 5. The researchers described how certain meals appeared to be non-negotiable in the environmental and combined workplaces. The cooked breakfast was part of the workplace culture and researchers found reaching an agreement on modifying this option challenging. A compromise was eventually reached on reducing the portion size of the cooked breakfast and cooking method was changed from frying to baking when possible. In this instance, workplace culture was identified as a barrier to full-scale implementation. Catering stakeholders anticipated employee resistance to change in response to changes being made to the breakfast options. This expectation persisted and impeded the implementation of some of the environmental modification elements. 1. Stakeholder buy-in: Employees recognised the importance of receiving ‘buy-in’ from catering and management stakeholders in order for the interven- tion to be successfully implemented. This was also highlighted by the researchers who acknowledged their flexibility and willingness to change as a crucial facilitating factor. Flexibility and negotiation Catering stakeholders anticipated that their involve- ment would impress the head office of their catering company as staff will have the opportunity to apply the knowledge and skills they gained on how to pro- duce healthy menus after the study period and also in future interventions. This long term potential benefit garnered buy-in from catering stakeholders and facilitated intervention implementation as they were more invested in making the intervention a success in their workplace. 2. Production work: Both managers and employees perceived shift work to be a barrier to implementation. This was due to the logistical problems of arranging appointments for shift workers outside standard office hours. However, it emerged that it was the nature of production work 2. Production work: Both managers and employees perceived shift work to be a barrier to implementation. This was due to the logistical problems of arranging appointments for shift workers outside standard office hours. However, it emerged that it was the nature of production work Flexibility and negotiation The researchers who collected data and were involved in coordination and delivery of intervention elements were adaptable to dynamic workplace environments which facilitated implementation. This flexibility enabled the researchers to successfully negotiate with workplace managers on degrees of change that were agreeable to all parties and ensured the study received organisational support. Verbatim examples of this theme are included in Table 4. Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 7 of 13 Table 4 Theme of ‘negotiation and flexibility’ and verbatim examples Theme Verbatim Examples Negotiation and flexibility 1. Flexibility: “You need to adapt and be understanding because schedules do change so you go in with your full schedule and you mightn’t get all of them or people last minute can’t make it and you’re getting annoyed when you’re there on site waiting but out on site things are changing constantly so you really have to adapt”. (Researcher 2 - follow-up stage) 2. Negotiation: “Changing down to nearly half, we just couldn’t, there would be uproar…we did a taste test, we put three plates out one with what we serve now, one with what UCC wanted us to serve and something somewhere in the middle that we felt we could serve and get away with, that’s the way we made our choice” (Occupational health, combined intervention site baseline stage). “The breakfast option alright was something that you couldn’t change too much. I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it” (Researcher 2 - follow- up stage) 3. High-level workplace management support: “I found it very, very hard to get product builders released for their sessions. That was a huge struggle for me, it’s the team leaders and they’re all about their metrics, they want to have, net efficiencies, be on target” (Occupational Health—nutrition education site—follow-up stage). 1. Flexibility: “You need to adapt and be understanding because schedules do change so you go in with your full schedule and y mightn’t get all of them or people last minute can’t make it and you’re getting annoyed when you’re there on site waiting but o on site things are changing constantly so you really have to adapt”. (Researcher 2 - follow-up stage) 2. Workplace structures and cultures Production work: “There’s a big, discrepancy between the support staff and the people who work on the line, in that the support staff have that freedom to, to go to these things” (Occupational health, nutrition education site—follow-up stage). 3.Organisational restructuring: “Those who are in charge they’d have the overall influence because they’re the ones bringing in the stock and stuff, so they have to be behind it 100 %. Like if there was opposition from the management that could hinder it” (Employee, nutrition education site—baseline stage). “Many employees they left the company and were moved to other departments, so it was hard to get them back for the last 2. Production work: “There’s a big, discrepancy between the support staff and the people who work on the line, in that the support staff have that freedom to, to go to these things” (Occupational health, nutrition education site—follow-up stage). 3.Organisational restructuring: “Those who are in charge they’d have the overall influence because they’re the ones bringing in the stock and stuff, so they have to be behind it 100 %. Like if there was opposition from the management that could hinder it” (Employee, nutrition education site—baseline stage). “Many employees they left the company and were moved to other departments, so it was hard to get them back for the last stage of the study but we got agreement from the managers in order to allow us to complete the last stage” (Researcher 3 - follow-up stage). 4.Workplace culture: “Well it’s another concern, its more rural here, people are a bit more conservative about their food, I mean we’ve been asked over the years for stuff like Panini’s, honestly, I’d give them a week and they just don’t go” (Catering Manager, environmental site baseline stage). rather than the shift cycles that impeded implementation. agree to all modifications. Catering stakeholders were cautious when agreeing changes which resulted in the cooked breakfast menu option not being fully modified in the workplace. However, as previously mentioned researchers overcame this by reaching compromises on method of cooking, portion size and reducing the number of days that chips were available in the workplaces. p 3. Organisational restructuring: Conversely, a number of workplace factors were identified as aspects that impeded implementation. Two of the largest workplaces (education and combined) underwent major restructuring during the study. Workplace structures and cultures This involved the relocation of a large number of employees from both workplaces, which resulted in them being ineligible to participate in the study as they were no longer exposed to the intervention. As a direct result of the restructuring, a large proportion of the remaining employees changed shift patterns. In order to deal with these effects researchers had to liaise with management on how to best minimise loss to follow-up and had to adapt elements of the study to these changes. This involved researchers creating an appointment schedule to facilitate changes in shift work patterns to encourage em- ployees to complete all stages of data collection. The time it took to liaise with management regarding restructuring changes had a direct impact on the time- line of the study. Adjusting to the restructuring changes and the delays in recruitment meant that data collection timelines had to re-evaluated, however getting approval from the management stakeholders for these readjust- ments proved to be very time consuming. Workplace structures and cultures Individual workplace structures and cultures had an im- pact on implementation. In workplaces where senior Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 8 of 13 Table 5 Theme of ‘workplace structures and cultures’ and verbatim examples Theme Verbatim Examples Workplace structures and cultures 1. Stakeholder buy-in: “We had really good contacts with HR, they helped with recruitment, they helped schedule some participants…..that was probably the easiest site in terms of scheduling and recruiting…. if someone didn’t turn up all I had to do was go downstairs and tell one of the HR people and they would actually go and get the employee” (Researcher 1 - follow-up stage). 2. Production work: “There’s a big, discrepancy between the support staff and the people who work on the line, in that the support staff have that freedom to, to go to these things” (Occupational health, nutrition education site—follow-up stage). 3.Organisational restructuring: “Those who are in charge they’d have the overall influence because they’re the ones bringing in the stock and stuff, so they have to be behind it 100 %. Like if there was opposition from the management that could hinder it” (Employee, nutrition education site—baseline stage). “Many employees they left the company and were moved to other departments, so it was hard to get them back for the last stage of the study but we got agreement from the managers in order to allow us to complete the last stage” (Researcher 3 - follow-up stage). 4.Workplace culture: “Well it’s another concern, its more rural here, people are a bit more conservative about their food, I mean we’ve been asked over the years for stuff like Panini’s, honestly, I’d give them a week and they just don’t go” (Catering Manager, environmental site baseline stage). Table 5 Theme of ‘workplace structures and cultures’ and verbatim examples Theme Verbatim Examples Table 5 Theme of ‘workplace structures and cultures’ and verbatim examples Theme Verbatim Examples Workplace structures and cultures 1. Stakeholder buy-in: “We had really good contacts with HR, they helped with recruitment, they helped schedule some participants…..that was probably the easiest site in terms of scheduling and recruiting…. if someone didn’t turn up all I had to do was go downstairs and tell one of the HR people and they would actually go and get the employee” (Researcher 1 - follow-up stage). 2. Viability and intensity of interventions The design of the interventions also impacted how they were implemented. The sustainability of the interventions and the ability of workplaces to tailor the interventions to meet the needs of their workplace facilitated implemen- tation. The anticipated employee resistance to change in response to the environmental modification impeded implementation of the interventions. The intensity of the interventions also affected implementation. The high- intensity intervention (combined intervention) was well received by employees. However, the low-intensity inter- ventions (education and environmental) did not meet employee expectations which impeded implementation. Verbatim examples of this theme are included in Table 6. 1. Sustainability of interventions: Intervention design had impact on implementation. At the outset, catering staff were apprehensive about implementing environmental modification elements as they anticipated it would cause a significant increase in workload. However, it transpired that any extra workload initially created dissipated once the intervention was in place and as a result the study was easier to maintain. Environmental modification elements became part of the normal catering routine within workplaces even after the study, with workplaces sustaining elements. Similarly, the environmental modification site maintained the 1. Sustainability of interventions: Intervention design had impact on implementation. At the outset, catering staff were apprehensive about implementing environmental modification elements as they anticipated it would cause a significant increase in workload. However, it transpired that any extra workload initially created dissipated once the intervention was in place and as a result the study was easier to maintain. Environmental modification elements became part of the normal catering routine within workplaces even after the study, with workplaces sustaining elements. Similarly, the environmental modification site maintained the 4. Workplace culture: According to the researchers involved in data collection, the workplace culture provided challenges during implementation. This manifested itself particularly in the environmental modification site, with the majority of employees described as having ‘traditional’ eating habits. The cooked breakfast menu options and side portion of chips were described as part of the tradition of the workplace. The expectation of poor uptake of the interventions made catering stakeholders reticent to Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 9 of 13 Table 6 Theme of ‘viability and intensity of intervention design’ and verbatim examples Theme Verbatim Examples Viability and intensity of intervention design 1. Viability and intensity of interventions Information at a glance: “People are in a hurry so it was a perfect situation where you were rushing in and out you could still see at a glance what your options were in terms of healthy choices” (Occupational health, nutrition education site—follow-up stage). 4. Employee resistance to change: “The glazed loin of bacon, we took it off for 2 weeks and we had something like 300 common cards or something you know it’s like, ‘where is bacon’ because it would always be on a Monday or Tuesday” (Catering manager, combined intervention site—follow—up stage). 4. Employee resistance to change: “The glazed loin of bacon, we took it off for 2 weeks and we had something like 300 common cards or something you know it’s like, ‘where is bacon’ because it would always be on a Monday or Tuesday” (Catering manager, combined intervention site—follow—up stage). “I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it but to be fair when we spoke again with them there wasn’t too much backlash” (Researcher 2 - follow-up stage). “I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it but to be fair when we spoke again with them there wasn’t too much backlash” (Researcher 2 - follow-up stage). “I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it but to be fair when we spoke again with them there wasn’t too much backlash” (Researcher 2 - follow-up stage). 5. Intervention intensity: “It’s not very regular, should I say and it’s not very intrusive, you know what I mean… it’s the idea of, you know, getting weighed in once a week and kind of like the competition type thing” (Employee, environmenta site—follow-up stage). 5. Intervention intensity: “It’s not very regular, should I say and it’s not very intrusive, you know what I mean… it’s the idea of, you know, getting weighed in once a week and kind of like the competition type thing” (Employee, environmental site—follow-up stage). Viability and intensity of interventions dietary behaviour, regardless of participation in the study with all employees being exposed to the intervention in the canteen. healthy default menu options, increased the number of ‘chip free’ days per week in the workplace and removed free-flowing sugar and salt from the can- teen. The catering staff in the combined intervention decided to keep elements that modified the nutri- tional quality of food in terms of fat, saturated fat, sugar and salt. 3. Information at a glance: Employees outlined how the traffic light system enabled them to make informed decisions with regards to healthy or unhealthy menu options. It provided information at a glance in a fast- paced environment which was particularly helpful to production workers as their lunch times were very restrictive. This visibility of the intervention was de- scribed as a talking point among employees and they discussed their clinical measurements, progress and feedback with each other. Displays of nutritional in- formation in the canteen and the daily email of healthy options were considered effective. The traffic lights created a social desirability response as em- ployees were reluctant to choose a menu option that was coded as red when they were eating in a group. It also emerged that since the study finished in the workplaces, employees and catering stakeholders found the absence of intervention very noticeable, mainly the traffic light coding system and the nutri- tional information that was displayed in the canteen. The design of the intervention in terms of its inclu- sive and visible nature was perceived to be a key fa- cilitator for successful implementation. 3. However, there was a perception among the researchers that catering stakeholders in the combined workplace found the initial implementation of the intervention burdensome in terms of extra workload. Researchers suggested that this caused a delay in implementation at the outset which was overcome through negotiation of elements that were more feasible for the catering staff to implement. p 2. Tailoring of interventions: The advantage of being able to tailor the intervention to address certain needs was also alluded to by the employees. An employee being able to ‘pick and choose’ to engage with certain elements was not an intended feature of the study design. Viability and intensity of interventions Sustainability of interventions: “It was much easier than I thought it was going to be…I was a little bit scared at the start of all the changes that would have to be made, but actually it was fine, it was fine, it was all quite manageable” (Catering manager, environmental site—follow-up stage). 2. Tailoring of interventions: “Even though the study is over it still continued, there was no dramatic okay that’s done go back to the old ways, pretty much there’s a lot of things that we kept on board” (Catering manager, combined intervention site—follow-up stage). 3. Information at a glance: “People are in a hurry so it was a perfect situation where you were rushing in and out you could still see at a glance what your options were in terms of healthy choices” (Occupational health, nutrition education site—follow-up stage). 4. Employee resistance to change: “The glazed loin of bacon, we took it off for 2 weeks and we had something like 300 common cards or something you know it’s like, ‘where is bacon’ because it would always be on a Monday or Tuesday” (Catering manager, combined intervention site—follow—up stage). “I suppose from their side they were just afraid that there would be a lot of backlash from the employees and there at the front line then dealing with it but to be fair when we spoke again with them there wasn’t too much backlash” (Researcher 2 - follow-up stage). 5. Intervention intensity: “It’s not very regular, should I say and it’s not very intrusive, you know what I mean… it’s the idea of, you know, getting weighed in once a week and kind of like the competition type thing” (Employee, environmen site—follow-up stage). 2. Tailoring of interventions: “Even though the study is over it still continued, there was no dramatic okay that’s done go back to the old ways, pretty much there’s a lot of things that we kept on board” (Catering manager, combined intervention site—follow-up stage). 3. Information at a glance: “People are in a hurry so it was a perfect situation where you were rushing in and out you could still see at a glance what your options were in terms of healthy choices” (Occupational health, nutrition education site—follow-up stage). 3. Viability and intensity of interventions BMC Health Services Research (2016) 16:139 Page 10 of 13 Page 10 of 13 Page 10 of 13 combined intervention workplace reported that employees’ resistance to change was largely in response to the removal of some of the unhealthy options on the menu. This impeded the implementation of the intervention slightly as caterers were reluctant to introduce a further chip free day that had been suggested during the negotiation with the researchers. However, catering stakeholders were determined to implement the agreed intervention elements to an extent they thought was feasible. The expectation of resistance to change was one of the main reasons cited for negotiating the degrees of change in the workplace. There was a perception among researchers that the ‘backlash’ was not as great as expected. Researchers suggested that any resistance that occurred was due to a small minority in the workplaces and the catering company were capable of dealing with it. production work rather than restrictive shift cycles im- peded implementation of a complex workplace dietary intervention. Organisational restructuring caused delays to the study timeline, attrition and disruptions to schedules. These barriers persisted throughout the study but were eased by the flexibility and negotiation skills of the re- searchers. The adaptability of the implementation team was a vital facilitator for implementation and helped accommo- date the impact of extensive organisational restructuring. Despite consensus in the literature that workplace dietary process evaluations should be conducted concur- rently with evaluations of outcomes, the current evi- dence base is extremely limited [25]. However, findings from this study are consistent with process evaluations of other types of organisational interventions. The struc- tural environment can act as a major barrier to imple- mentation if it cannot tolerate the intervention that is being implemented [34]. Previous research indicates that contextual factors have significant influence on the im- plementation of workplace interventions. Complexities of the modern working environment including structural changes, competing projects, employee turnover and downsizing have all been outlined as potential barriers to implementation [27, 29]. Workplaces are dynamic en- vironments and their contexts cannot be controlled. The flexibility and adaptability of the researchers were im- portant factors that helped the study overcome context- ual barriers [23]. 5. . Intervention intensity: Catering stakeholders and employees in the education and environmental workplaces felt that the study lost momentum towards the end of the study period. Viability and intensity of interventions The interventions implemented in the education and environmental workplaces were low intensity by design compared to the high intensity intervention that was implemented in the combined workplace. Employees and catering stakeholders in the education and environmental workplaces felt that the interventions would have benefited from more regular stages of data collection and suggested that more emphasis should be placed on physical measurements and weight loss to increase intervention intensity. The low intensity interventions delivered in these workplaces did not meet employee expectations. Employees felt that delays in data collection and long stages of follow-up resulted in a loss of interest and focus in the study. The findings are consistent with research that suggests stakeholder buy-in and supportive organisational cultures facilitate implementation [23, 27, 29]. Managers perceived benefits and personal interest in the study fostered their buy-in and support which facilitated implementation. Stakeholder consultation and buy-in is critical for success- ful implementation [34]. The implementation team openly consulted with each other throughout recruitment, inter- vention allocation and intervention implementation. This consultation process was beneficial for the researchers collecting data and coordinating and delivering the inter- vention as they were able to assess the capacity and suit- ability of each workplace for particular intervention elements. The process also assisted in workplaces provid- ing organisational support to the study. Supportive organ- isational structures and systems are a key enabler of successful implementation [34]. This study reported the presence of strong organisational support from one of the workplaces whereby the HR manager assisted in recruiting and scheduling of employees for their appointments which facilitated timely implementation. Viability and intensity of interventions This occurred naturally throughout the study as employees reported that different elements of the intervention worked for them, for example, some employees found the health eating chat table more beneficial to them compared to the monthly group nutrition presentations. Employees also appreciated that participation in the study was open to all employees in the workplace, regardless of job position. This inclusive study design which allowed employees to adapt elements to meet their own requirements was perceived as a key facilitating factor for implementation by employees and management stakeholders. The intervention created scope to positively impact all employees in terms of 2. Tailoring of interventions: The advantage of being able to tailor the intervention to address certain needs was also alluded to by the employees. An employee being able to ‘pick and choose’ to engage with certain elements was not an intended feature of the study design. This occurred naturally throughout the study as employees reported that different elements of the intervention worked for them, for example, some employees found the health eating chat table more beneficial to them compared to the monthly group nutrition presentations. Employees also appreciated that participation in the study was open to all employees in the workplace, regardless of job position. This inclusive study design which allowed employees to adapt elements to meet their own requirements was perceived as a key facilitating factor for implementation by employees and management stakeholders. The intervention created scope to positively impact all employees in terms of The design of the intervention in terms of its inclu- sive and visible nature was perceived to be a key fa- cilitator for successful implementation. 4. Employee resistance to change: The potential for employee ‘backlash’ in response to choice restriction impeded implementation. Caterers anticipated that the implementation of choice restriction may create a sense of perceived powerlessness amongst employees. They also anticipated employee ‘backlash’ in reaction to the introduction of chip free days and reduced portion size. Some of these concerns were both anticipated and realised concerns. The 4. Employee resistance to change: The potential for employee ‘backlash’ in response to choice restriction impeded implementation. Caterers anticipated that the implementation of choice restriction may create a sense of perceived powerlessness amongst employees. They also anticipated employee ‘backlash’ in reaction to the introduction of chip free days and reduced portion size. Some of these concerns were both anticipated and realised concerns. The Fitzgerald et al. Discussion However, in practice, the authors agree that employees should be made fully aware of what the intervention entails at the outset. This study has several strengths and limitations. To ensure rigour, Guba’s framework for ensuring trust- worthiness in qualitative research was adhered to [36]. This framework proposes four criteria for assessing trustworthiness; credibility, transferability, dependability and confirmability. Credibility is concerned with asses- sing the internal validity of the findings, ensuring they are congruent with reality [36]. In an attempt to ensure credibility, well established research methods were used. These methods included the use of random sampling when appropriate, holding regular debriefing discussions during data collection and triangulating findings from different stakeholders. Transferability refers to the extent to which findings can be generalised or applied to other contexts [36]. These findings may be generalisable nation- ally and transferable internationally as the workplaces in- cluded are multi-national manufacturing companies with similar worldwide structures and operations. Dependabil- ity addresses the reliability of the study and whether or not the same results would be achieved if the study were repeated [36]. In this study dependability is concerned with the repeatability of the methods [36, 37]. Both an in- depth methodological description which reported exten- sively on processes used and a comprehensive description on how changing contexts affected the implementation of interventions were provided. Based on the results of this study, it is vital that future intervention teams consider individual workplace cul- tures and structural changes during the development and implementation of interventions. The effects of structural changes need to be monitored regularly throughout the study. Workplaces need to be able to tailor the intervention to meet their own specific needs with minimal effort [11]. Consultation with key stake- holders should be an integral aspect of complex work- place interventions prior to implementation and can assist in considering the challenges of manufacturing work and in assessing an organisations readiness for change. Stakeholders need to be aware of the demands of the study and researchers need to determine if the workplace structure can tolerate all aspects of the inter- vention. Understanding the feasibility of implementing the FCW interventions will help researchers and work- place stakeholders anticipate future barriers of imple- menting multisite workplace dietary interventions. The fourth construct of confirmability is concerned with the objectivity of the research [36]. Discussion This study aimed to establish what factors facilitated or impeded implementation of complex workplace dietary interventions. Four principal themes emerged; perceived benefits of participation, negotiation and flexibility of the implementation team, viability and intensity of interven- tion design and workplace structures and cultures. Contextual factors were found to heavily influence im- plementation. Tacit workplace cultures including ‘trad- itional’ menu preferences and anticipated and realised resistance to change prevented full-scale implementation of the environmental intervention. The target-driven culture of manufacturing workplaces impeded imple- mentation as the researchers involved in data collection experienced challenges in arranging appointments with employees. Our results suggest that manufacturing Our findings are in line with Lewin’s theory of organisa- tional change which suggests that sustained organisational change is achieved by workplaces achieving an appropriate balance between minimising restraining factors and pro- moting facilitating factors [31–33]. Tacit organisational Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 11 of 13 Page 11 of 13 cultures such as resistance to change and fragmented relationships between workplace stakeholders need to be managed. Resistance to change is a key barrier to achieving sustainable organisational change [34]. This stage can also be referred to as the ‘Unfreezing’ stage of the Lewin’s theory whereby organisations need to recognise the need to change the current situation [31]. This was achieved through initial consultations between the research team and workplace stakeholders. The second stage is referred to as the ‘Transition’ stage and involves the actual implemen- tation of the intervention which should promote new be- haviours, values or attitudes. This was achieved by implementing the FCW interventions and in order to over- come resistance, negotiation on degrees of change occurred during the implementation process. Restrictive factors can be overcome by key workplace stakeholders reinforcing the benefits of participation and by negotiation and comprom- ise to minimise negative internal politics. This step can also be referred to as the ‘Re-freezing’ stage where the change becomes fixed in the workplace culture of the organisation. Schein’s theory of organisational change is also reflected in our results as such positive reinforcement and minimising of restrictive facts can help the change to become embed- ded in the workplace culture [31]. blinded to their interventions during the FCW trial, the re- searchers were unable to clarify the employees’ expectations of the different interventions. Discussion In this study, re- searcher bias cannot be ruled out as some of the authors were involved in the overall FCW study and were familiar with participants. Efforts were made to remain as object- ive as possible with researchers conducting interviews in workplaces that they did not visit for data collection. Furthermore, there were a number of members of the multidisciplinary FCW research team involved in the ana- lysis and interpretation of findings. However, the inclusion of respondent validation may have been useful as respon- dents’ interpretation of emerging results can help refine findings and strengthen conclusions. Consideration also needs to be given to employee ex- pectations. Employees’ expectations of an intervention can impact how it is implemented and received. The control, education and environmental workplaces re- ceived low intensity interventions and employees in these workplaces felt that the momentum of the study was lost over time. Employees had anticipated an inter- active intervention that would be of high intensity with more frequent physical assessments. This perceived loss of momentum impeded implementation as employees’ interest in the study declined. As the employees were Acknowledgements The authors would like to sincerely thank the workplaces, management and catering stakeholders and employees who were involved in the FCW study and the process evaluation. Authors’ contributions All authors worked on the design of this study. SF, FG and CK were responsible for data collection. SF and SMH were primarily responsible for data analysis. SMH acted as the inter-rater during analysis and moderator of the focus groups. All authors provided feedback on interpretation of analysis. SF drafted the paper and all authors provided feedback and approved the final manuscript. References Ethical approval was granted by the Clinical Research Ethics Committee of the Cork Teaching Hospitals in Ireland, March 2013. 1. Capacci S, Mazzocchi M, Shankar B, et al. Policies to promote healthy eating in Europe: a structured review of policies and their effectiveness. Nutr Rev. 2012;70(3):188–200. 1. Capacci S, Mazzocchi M, Shankar B, et al. Policies to promote healthy eating in Europe: a structured review of policies and their effectiveness. Nutr Rev. 2012;70(3):188–200. 2. WHO. Obesity: preventing and managing the global epidemic. Report of a WHO Consultation, WHO Technical Report Series. Geneva: World Health Organisation; 2000. p. 894. Consent for publication 3. Safefood. The cost of overweight and obesity on the island of Ireland. Executive summary. 2012.http://www.safefood.eu/SafeFood/media/ SafeFoodLibrary/Documents/Publications/Research%20Reports/Final-Exec- Summary-The-Economic-Cost-of-Obesity.pdf. Accessed 27th Feb 2015. Written informed consent was provided by all participants. Abbreviations Abbreviations CMAI: Catering Managers Association of Ireland; FCW: food choice at work study; HR: human resources; IDA: Industrial Development Authority of Ireland; MRC: Medical Research Council. Availability of data and materials 4. Signal LN, Walton MD, Ni Mhurchu C, et al. Tackling ‘wicked’ health promotion problems: a New Zealand case study. Health Promot Int. 2013; 28(1):84–94. Topic guides which were used in the interviews and focus groups are available as additional supporting files. However, signed confidentiality agreements prevent us from sharing transcripts. 5. Hunter DJ. Leading for health and wellbeing: the need for a new paradigm. J Public Health. 2009;31(2):202–4. 6. National Institute for Health and Clinical Excellence (NICE). Behaviour change: the principles for effective interventions. 2007. www.nice.org.uk/ guidance/ph6/chapter/3-Recommendations. Accessed 24th Feb 2015. Competing interests The authors declare that there are no conflicts of interest. Conclusion Cohesiveness between different stakeholders within the workplace and between the imple- mentation team (stakeholders involved in co-ordination and delivery of interventions and researchers involved in data collection and delivery of intervention elements) is essential for successful implementation. Intervention im- plementation within organisations is largely influenced by contextual factors. To achieve organisational change, these factors need to be carefully considered prior to implemen- tation along with an assessment of readiness for change. This study provides an in-depth understanding of the im- plementation context to further illuminate the findings of the FCW study. Our results may also inform the imple- mentation of future workplace dietary interventions for the development of sustainable diet-related disease pre- vention and provide an opportunity for scaling of similar interventions for use in practice) for use in practice. Additional file 5: Topic Guide for Follow-up Focus Group. (DOC 33 kb) Additional file 6: Topic Guide for Managers (Post implementation stage). (DOCX 27 kb) Additional file 5: Topic Guide for Follow-up Focus Group. (DOC 33 kb) Additional file 6: Topic Guide for Managers (Post implementation stage). (DOCX 27 kb) Funding This work is supported by the HRB Centre for Health & Diet Research grant (HRC2007/13) which is funded by the Irish Health Research Board and by the Department of Agriculture, Fisheries and Food. This work was also conducted as part of the HRB Scholar Programme in Health Services Research under Grant No. PHD/2007/16. Research bursaries were awarded by the Irish Heart Foundation and Nutrition and Health Foundation. Dr Sheena Mc Hugh is funded by the Health Research Board Research Leader Award in Diabetes (RL/2013/7). Received: 23 June 2015 Accepted: 19 April 2016 Received: 23 June 2015 Accepted: 19 April 2016 Conclusion The findings of this study can be used to support the argument that process evaluations should be carried out concurrently with effectiveness studies for work- place interventions [25]. This study demonstrates how process evaluations can be used to explore factors that may influence implementation in controlled intervention studies and highlights the complexities associated with implementing complex workplace Fitzgerald et al. BMC Health Services Research (2016) 16:139 Page 12 of 13 dietary interventions. Perceived benefits of participa- tion, stakeholder buy-in and organisational support are intrinsic facilitators of implementing workplace dietary interventions. Flexibility and negotiation play a pivotal role in overcoming the barriers of individual workplace cultures, structures and resistance to change. Interventions also need to be adaptable as the manufacturing companies need to tailor interven- tions to meet specific structural and cultural require- ments of their workplaces. Workplace stakeholders play a central role in achieving organisational change by reinforcing benefits and providing fundamental organisational support. Cohesiveness between different stakeholders within the workplace and between the imple- mentation team (stakeholders involved in co-ordination and delivery of interventions and researchers involved in data collection and delivery of intervention elements) is essential for successful implementation. Intervention im- plementation within organisations is largely influenced by contextual factors. To achieve organisational change, these factors need to be carefully considered prior to implemen- tation along with an assessment of readiness for change. This study provides an in-depth understanding of the im- plementation context to further illuminate the findings of the FCW study. Our results may also inform the imple- mentation of future workplace dietary interventions for the development of sustainable diet-related disease pre- vention and provide an opportunity for scaling of similar interventions for use in practice) for use in practice. dietary interventions. Perceived benefits of participa- tion, stakeholder buy-in and organisational support are intrinsic facilitators of implementing workplace dietary interventions. Flexibility and negotiation play a pivotal role in overcoming the barriers of individual workplace cultures, structures and resistance to change. Interventions also need to be adaptable as the manufacturing companies need to tailor interven- tions to meet specific structural and cultural require- ments of their workplaces. Workplace stakeholders play a central role in achieving organisational change by reinforcing benefits and providing fundamental organisational support. Additional files 7. Craig P, Dieppe P, Macintyre S, et al. Developing and evaluating complex interventions: the new Medical Research Council guidance. BMJ. 2008;337:a1655. Additional file 1: Topic Guide for Employees – Baseline stage. (DOCX 27 kb) Additional file 2: Topic Guide for Focus Group (Baseline stage). (DOC 31 kb) Additional file 3: Topic Guide for Managers (Baseline stage). (DOCX 23 kb) Additional file 4: Topic Guide for Employees (Post implementation stage). (DOCX 28 kb) 8. Mache S, Jensen S, Jahn R, et al. Worksite health program promoting changes in eating behavior and health attitudes. Health Promot Pract. 2015; 16(6):826–36. Additional file 1: Topic Guide for Employees – Baseline stage. (DOCX 27 kb) Additional file 2: Topic Guide for Focus Group (Baseline stage). (DOC 31 kb) Additional file 3: Topic Guide for Managers (Baseline stage). (DOCX 23 kb) Additional file 4: Topic Guide for Employees (Post implementation stage). (DOCX 28 kb) Additional file 1: Topic Guide for Employees – Baseline stage. (DOCX 27 kb) Additional file 2: Topic Guide for Focus Group (Baseline stage). (DOC 31 kb) Additional file 3: Topic Guide for Managers (Baseline stage). (DOCX 23 kb) Additional file 4: Topic Guide for Employees (Post implementation stage). (DOCX 28 kb) 9. Steckler A, Linnan L. Process Evaluation for Public Health Interventions and Research. San Francisco: Jossey-Bass; 2002. 10. Pope C, Ziebland S, Mays N. Qualitative research in health care. Analysing qualitative data. BMJ. 2000;320(7227):114–6. 11. Wierenga D, Engbers LH, Van Empelen P, et al. The implementation of multiple lifestyle interventions in two organizations: a process evaluation. J Occup Environ Med. 2014;56(11):1195–206. Page 13 of 13 Page 13 of 13 Fitzgerald et al. BMC Health Services Research (2016) 16:139 12. Chu C, Breucker G, Harris N, et al. Health-promoting workplaces—international settings development. Health Promot Int. 2000; 15:155–67. 13. Caperchione CM, Sharp P, Bottorff JL, et al. The POWERPLAY workplace physical activity and nutrition intervention for men: Study protocol and baseline characteristics. Contemp Clin Trials. 2015;44:42–7. 14. Mooney JD, Frank J, Anderson AS. Workplace dietary improvement initiatives ought not to be discouraged by modest returns from low-intensity interventions. Eur J Public Health. 2013;23(2):193–4. 15. Engbers LH, van Poppel MN, Chin A, Paw MJ, et al. Worksite health promotion programs with environmental changes: a systematic review. Am J Prev Med. 2005;29(1):61–70. 16. Maes L, Van Cauwenberghe E, Van Lippevelde W, et al. Fitzgerald et al. BMC Health Services Research (2016) 16:139 Additional files Effectiveness of workplace interventions in Europe promoting healthy eating: a systematic review. Eur J Public Health. 2012;22(5):677–83. 17. Ni Mhurchu C, Aston LM, Jebb SA. Effects of worksite health promotion interventions on employee diets: a systematic review. BMC Public Health. 2010;10:62. 18. Pomerleau J, Lock K, Knai C, et al. Interventions designed to increase adult fruit and vegetable intake can be effective: a systematic review of the literature. J Nutr. 2005;135(10):2486–95. 19. Volpe R, Stefano P, Massimiliano M, et al. Healthy fats for healthy nutrition. An educational approach in the workplace to regulate food choices and improve prevention of non-communicable diseases. High Blood Press Cardiovasc Prev. 2015;22(4):395–401. 20. Lassen AD, Thorsen AV, Sommer HM, et al. Improving the diet of employees at blue-collar worksites: results from the ‘Food at Work’ intervention study. Public Health Nutr. 2011;14(6):965–74. 21. Geaney F, Di Marrazzo J, Kelly C, et al. The food choice at work study: effectiveness of complex workplace dietary interventions on dietary behaviours and diet-related disease risk - study protocol for a clustered controlled trial. Trials. 2013;14:370. 22. Geaney F, Kelly C, Greiner BA, et al. The effectiveness of workplace dietary modification interventions: a systematic review. Prev Med. 2013;57(5):438–47. 23. Mackison D, Mooney J, Macleod M, et al. Lessons learnt from a feasibility study on price incentivised healthy eating promotions in workplace catering establishments. J Hum Nutr Diet. 2016;29(1):86–94. 24. Nielsen K, Taris TW, Cox T. The future of organizational interventions: Addressing the challenges of today’s organizations. Work Stress. 2010;24(3):219–33. 24. Nielsen K, Taris TW, Cox T. The future of organizational interventions: Addressing the challenges of today’s organizations. Work Stress. 2010;24(3):219–33. 25. Wierenga D, Engbers LH, Van Empelen W, et al. What is actually measured in process evaluations for worksite health promotion programs: a systematic review. BMC Public Health. 2013;13:1190. 26. Nielsen K, Randall R. Opening the black box: Presenting a model for evaluating organizational-level interventions. Eur J Work Organ Psychol. 2012;22(5):601–17. 26. Nielsen K, Randall R. Opening the black box: Presenting a model for evaluating organizational-level interventions. Eur J Work Organ Psychol. 2012;22(5):601–17. 27. Saksvik P, Nytro K, Dahl-Jorgensen C, et al. A process evaluation of individual and organizational occupational stress and health interventions. Work Stress Int J Work Health Organ. 2002;16(1):37–57. 27. Saksvik P, Nytro K, Dahl-Jorgensen C, et al. A process evaluation of individual and organizational occupational stress and health interventions. Work Stress Int J Work Health Organ. 2002;16(1):37–57. Additional files 28. Cox T, Karanika M, Griffiths A, et al. Evaluating organizational-level work stress interventions: Beyond traditional methods. Work Stress. 2007;21(4):348–62. 28. Cox T, Karanika M, Griffiths A, et al. Evaluating organizational-level work stress interventions: Beyond traditional methods. Work Stress. 2007;21(4):348–62. 29. Nielsen K, Fredslund H, Christensen KB, et al. Success or failure? Interpreting and understanding the impact of interventions in four similar worksites. Work Stress. 2006;20(3):272–87. 30. Heward S, Hutchins C, Keleher H. Organizational change—key to capacity building and effective health promotion. Health Promot Int. 2007;22(2):170–8. 31. Batras D, Duff C, Smith BJ. Organizational change theory: implications for health promotion practice. Health Promot Int. 2016;31(1):231-41 32. Siler-Wells G. An implementation model for health system reform. Soc Sci Med. 1987;24(10):821–32. Submit your next manuscript to BioMed Central and we will help you at every step: Submit your next manuscript to BioMed Central and we will help you at every step: 33. Weick KE, Quinn RE. Organizational change and development. Annu Rev Psychol. 1999;50:361–86. • We accept pre-submission inquiries • Our selector tool helps you to find the most relevant journal • We provide round the clock customer support • Convenient online submission • Thorough peer review • Inclusion in PubMed and all major indexing services • Maximum visibility for your research Submit your manuscript at www.biomedcentral.com/submit and we will help you at every step: 34. Burke K, Morris K, McGarrigle L. An Introductory Guide to Implementation: Terms, Concepts and Frameworks. Dublin: Centre for Effective Services (CES); 2012. 35. Gale NK, Health G, Cameron E, et al. Using the framework method for the analysis of qualitative data in multi-disciplinary health research. BMC Med Res Methodol. 2013;13:117. 36. Guba E. Criteria for assessing the trustworthiness of naturalistic inquiries. ECTJ. 1981;29(2):75–91. 36. Guba E. Criteria for assessing the trustworthiness of naturalistic inquiries. ECTJ. 1981;29(2):75–91. 37. Shenton AK. Strategies for ensuring trustworthiness in qualitative research projects. Educ Inf. 2004;22:63–75. 37. Shenton AK. Strategies for ensuring trustworthiness in qualitative research projects. Educ Inf. 2004;22:63–75.
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The COVID-19 Response in North America
Disaster medicine and public health preparedness
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Disaster Medicine and Public Health Preparedness www.cambridge.org/dmp Disaster Medicine and Public Health Preparedness Keywords: coronavirus; covid-19; North America; social network analysis; twitter Corresponding author: Seungil Yum, Email: yumseungil@gmail.com. Corresponding author: Seungil Yum, Email: yumseungil@gmail.com. www.cambridge.org/dmp Design, Construction, and Planning, University of Florida, Gainesville, FL, USA Abstract Original Research Cite this article: Yum S. The COVID-19 response in North America. Disaster Med Public Health Prep. 17(e320), 1–11. doi: https://doi.org/ 10.1017/dmp.2022.290. Keywords: coronavirus; covid-19; North America; social network analysis; twitter Corresponding author: Seungil Yum, Email: yumseungil@gmail.com. Original Research Cite this article: Yum S. The COVID-19 response in North America. Disaster Med Public Health Prep. 17(e320), 1–11. doi: https://doi.org/ 10.1017/dmp.2022.290. Keywords: coronavirus; covid-19; North America; social network analysis; twitter Corresponding author: Seungil Yum, Email: yumseungil@gmail.com. Original Research In our Information Technology (IT) based societies, social media plays an important role in communications and social networks for COVID-19. This study explores social responses for COVID-19 in North America, which is the most severe continent affected by the COVID-19 pandemic. This study employs social network analysis for Twitter among the US, Canada, and Mexico. This study finds that the 3 countries show different characteristics of social networks for COVID-19. For example, the Prime Minister plays the second most important role in the Canadian networks, whereas the Presidents play the most significant role in them, in the US, and Mexico. WHO shows a pivotal effect on social networks of COVID-19 in Canada and the US, whereas it does not affect them in Mexico. Canadians are interested in COVID-19 apps, the American people criticize the president and administration as incompe- tent in terms of COVID-19, and the Mexican people search for COVID-19 cases and the pan- demic in Mexico. This study shows that governments and disease experts should understand social networks and communications of social network services, to develop effective COVID-19 policies according to the characteristics of their country. Cite this article: Yum S. The COVID-19 response in North America. Disaster Med Public Health Prep. 17(e320), 1–11. doi: https://doi.org/ 10.1017/dmp.2022.290. Cite this article: Yum S. The COVID-19 response in North America. Disaster Med Public Health Prep. 17(e320), 1–11. doi: https://doi.org/ 10.1017/dmp.2022.290. Cite this article: Yum S. The COVID-19 response in North America. Disaster Med Public Health Prep. 17(e320), 1–11. doi: https://doi.org/ 10.1017/dmp.2022.290. Introduction COVID-19 is a new virus linked to the same family of viruses as Severe Acute Respiratory Syndrome (SARS) or Middle East Respiratory Syndrome (MERS). COVID-19 was first discov- ered in Wuhan, China and has become an ongoing pandemic. The World Health Organization declared the outbreak a Public Health Emergency of International Concern on January 30, 2020, and a pandemic on March 11, 2020. p Coronavirus (COVID-19) has been 1 of the most serious issues across the world since 2019. As at August 13, 2020, COVID-19 affects more than 188 countries and territories, resulting in more than 20.4 million cases of COVID-19 and 744000 deaths. Controlling COVID-19 has become 1 of the most important tasks for governments to protect their citizens and economies.1–6 Countries and governments have developed many policies to reduce the damage of COVID- 19 and understand the effects of COVID-19 on human life.7–9 For example, the Canadian gov- ernment released the COVID-19 Economic Response Plan to help ensure that Canadians can pay for essentials like mortgages, rent, and groceries, and to help businesses continue to pay their employees and their bills during this time of uncertainty.10 y g y Many scholars have explored how COVID-19 plays a severe role in people’s health across the world.11–13 For instance, a comprehensive report published by the Chinese Center for Disease Control and Prevention highlights that elderly people, particularly those older than 80 years, and people with comorbidities, such as cardiac disease, respiratory disease, and diabetes, are at great- est risk of serious disease and death based on epidemiological characteristics of 72314 patients with COVID-19.14,15 People over 60 years old are at higher risk than children who might be less likely to become infected or, if so, may show milder symptoms or even asymptomatic infection.13,16 However, prior studies have heavily explored the number, symptoms, and differences of COVID-19 patients.17–22 This is because COVID-19 is a new virus that was first identified in December 2019 and has become an ongoing pandemic. © The Author(s), 2022. Published by Cambridge University Press on behalf of Society for Disaster Medicine and Public Health, Inc. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/ by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited. © The Author(s), 2022. Published by Cambridge University Press on behalf of Society for Disaster Medicine and Public Health, Inc. Introduction This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/ by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited. Some studies have highlighted how COVID-19 plays an important role in people and econo- mies by employing network analyses.6,23,24 For example, Tiwari et al.24 reported pandemic risk of COVID-19 outbreak in the US based on network connectedness with air travel data. So et al.23 highlighted financial network connectedness and systemic risk during the COVID-19 pan- demic. Xiang et al.6,25 reported on the dynamic spread of global COVID-19 infections in 18 countries with the connectedness approach based on the TVP-VAR model. However, they have all barely highlighted how COVID-19 information is spread by Social Network Services (SNS) to cope with the new virus pandemic. Understanding SNS for COVID-19 is highly important because most people get relevant information on COVID-19 from SNS in our IT- based societies. Governments and countries could provide important news and information on COVID-19 via SNS in a timely manner when https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press S Yum 2 Table 2. Descriptive statistics Table 1. COVID-19 in North America Table 1. COVID-19 in North America COVID-19 in North America (by August 9, 2020) Ranking Country Confirmed Deaths Recovered 24 Canada 119451 8981 103728 1 United States 5199444 165617 2664701 7 Mexico 480278 52298 322465 p Graph Metric Canada The US Mexico Graph Type Directed Directed Directed Vertices 15639 20014 14926 Unique Edges 21408 24263 19796 Edges with Duplicates 4,284 2945 4570 Total Edges 2692 27208 24366 Self-Loops 4346 3738 3188 Reciprocated Vertex Pair Ratio 0.006 0.007 0.005 Reciprocated Edge Ratio 0.013 0.013 0.010 Connected Components 2451 3620 1764 Single-Vertex Connected Components 1606 1820 1121 Maximum Vertices in a Connected Component 10663 10718 11450 Maximum Edges in a Connected Component 19165 16205 20117 Maximum Geodesic Distance (Diameter) 21 22 24 Average Geodesic Distance 5.674 6.368 6.215 Graph Density 0.000 0.000 0.000 Modularity 0.747 0.837 0.750 Minimum In-Degree 0 0 0 Maximum In-Degree 1227 1035 824 Average In-Degree 1.462 1.269 1.443 Median In-Degree 0.000 0 0 Minimum Betweenness Centrality 0 0 0 Maximum Betweenness Centrality 35577332 40811174 28700369 Average Betweenness Centrality 34014 30840 45814 Median Betweenness Centrality 0.000 0.000 0.000 Minimum Eigenvector Centrality 0.000 0.000 0.000 Maximum Eigenvector Centrality 0.025 0.024 0.032 Average Eigenvector Centrality 0.000 0.000 0.000 Median Eigenvector Centrality 0.000 0.000 0.000 they understand how people communicate with each other to spread pivotal information on COVID-19. In this vein, this study explores Twitter, which is 1 of the most popular SNS, by employing social network analysis (SNA). This study highlights the communication networks for COVID-19 in Canada, the US, and Mexico since North America is the most severe continent affected by the COVID-19 pandemic.26–28 For example, The US has become the country with the largest number of COVID-19 reported cases and deaths24 (see Table 1). It is believed that this study is the first article exploring social networks of COVID-19 by employing SNA for Twitter across North America.29–31 Research methodology This study employed Social Network Analysis (SNA) to explore the social networks of COVID-19 in North America. SNA is the proc- ess of investigating social structures using networks and graph theory.32 It is a methodology for exploring the relationship among individuals, groups, and organizations in explaining variations in behaviors, and beliefs, as well as outcomes.33 While SNA has been present in some form for decades, it entered popular culture in the beginning of the twenty-first century.34 SNA allowed this study to characterize networked structures in terms of COVID-19 key play- ers and Twitter users. This study utilized Twitter data to highlight the online commu- nications of people for COVID-19 across public key players. Twitter has been widely used for big data analyses.35–39 the number of shortest paths that pass through the key player. Key players that more frequently lie on shortest paths between other users have higher betweenness centrality scores. In-degree is the number of connections that point inward at a vertex. For example, if a key player is mentioned 10 times by other users in a Twitter topic-network, the score of the key player is 10.42 Eigenvector centrality calculates a node’s centrality while consid- ering the importance of its neighbors. For instance, a key player with 10 very popular twitter users has a higher score of eigenvector centrality than another key player with 10 relatively unpopular twitter users.43 This study employed NodeXL (Social Media Research Foundation, California, USA) between August 1 and August 2, 2020, based on the keywords ‘COVID-19,’ and the countries used to highlight the social networks of North America for COVID-19. NodeXL (Social Media Research Foundation, California, USA) is a visualization software program, which supports social networks and content analysis. NodeXL (Social Media Research Foundation, California, USA) has been extensively used to analyze social network responses in academic fields40 and it enabled this study to undertake social network analysis and capture key players in terms of COVID-19. It allowed the analysis of relational data and helped describe the overall relational COVID-19 network structure for Twitter. This study employed the between centrality to capture public key players for Twitter users. This is because the score of the between centrality could show people’s dependence on the key player for the COVID-19 networks. The top 20 key players among all Twitter users were chosen based on the magnitude of the between centrality (see Table 2 for descriptive statistics). https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Results Figures 1 to 3 highlight that key players are highly concentrated in the central part of social networks for COVID-19, whereas they show different characteristics according to centrality types, key player types, and countries. For example, key players in Canadian networks are heavily clustered in the center of the main circle, whereas those in Mexico networks are relatively dispersed across the social networks. Another example is that all national key players are in the main circle of the social networks, while some international key players are placed in the outside of the main circle in the Mexican networks. This study first showed betweenness centrality, in-degree cen- trality, and eigenvector centrality to highlight social networks for COVID 19 in North America. The betweenness centrality calcu- lates how much a node is in-between others. The betweenness cen- trality is measured by the number of shortest paths that passes through the node.41 Each key player receives a score based on Disaster Medicine and Public Health Preparedness 3 Tables 3 to 5 show the top 20 key players in Canada, the US, and Mexico. In Canadian networks, Health Canada and PHAC, which key player and the second-ranked player (the US: 40418529 and Mexico: 26593479 and 20525750). gure 1. Between centrality (top: Canada, center: the US, and bottom: Mexico). Figure 1. Between centrality (top: Canada, center: the US, and bottom: Mexico). key player and the second-ranked player (the US: 40811174 and 40418529 and Mexico: 26593479 and 20525750). Tables 3 to 5 show the top 20 key players in Canada, the US, and Mexico. In Canadian networks, Health Canada and PHAC, which is the agency of the government of Canada, ranked first with the between centrality (BC)’s value of 35577332. Health Canada and PHAC showed the biggest gap from the second-ranked key player among Canada, the US, and Mexico. For example, the value of Health Canada and PHAC was 2.5 times higher than that of the second-ranked key player (35577332 and 14256089), while the other countries showed little difference between the top ranked This is also 1 of the significant differences from the US and Mexico since they have their president as the number 1 player. In contrast, Justin Trudeau, who is the Prime Minister of Canada, placed second (14256089). https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press key player and the second-ranked player (the US: 40811174 and 40418529 and Mexico: 26593479 and 20525750). This is also 1 of the significant differences from the US and Mexico since they have their president as the number 1 player. In contrast, Justin Trudeau, who is the Prime Minister of Canada, placed second (14256089). For the sake of readers, the Prime Minister of Canada is the head of the government in Canada, inconsistent with other countries, such as the US and Mexico. Also, ‘CanadianPM,’ which is the official account of the https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Results For the sake of readers, the Prime Minister of Canada is the head of the government in Canada, inconsistent with other countries, such as the US and Mexico. Also, ‘CanadianPM,’ which is the official account of the https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press 4 S Yum S Yum 4 Figure 2. In-degree centrality (top: Canada, center: the US, and bottom: Mexico). Figure 2. In-degree centrality (top: Canada, center: the US, and bottom: Mexico). gathering COVID-19 information over the Internet, ranked tenth (5135869). Donald Trump (the US president at the time) placed fourteenth (4195138). World Health Organization (WHO) placed seventeenth (3898973). Prime Minister of Canada, and Chrystia Freeland who is the Deputy Prime Minister of Canada ranked fifteenth and sixteenth (4130006 and 3977503), respectively. The most remarkable finding was that CBC (Canadian Broadcasting Corporation) played an important role in social networks for COVID-19. For instance, CBC News and CBC News Alerts ranked third and fourth (10920955 and 10105638), respectively, while CBC British Columbia ranked eighth (7020672). CBC Calgary and CBC Toronto ranked nineteenth and twentieth (3265643 and 2853843), respectively. There were also some noticeable character- istics of Canada for social networks for COVID-19. Corona Update Bot, which is the Twitter account that runs automated tasks for In the US networks, President Donald Trump played the most important role in social networks of COVID-19. His account (Donald Trump) and the US government account (President Trump) placed first and eighteenth (40811174 and 2346261), respectively. President Donald Trump had the least gap from the second-ranked top player (CNN: 40418529) among the 3 coun- tries. Another remarkable characteristic is that international key players exert a significant impact on social networks of COVID- https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press 5 Disaster Medicine and Public Health Preparedness 5 Figure 3. Eigenvector centrality (top: Canada, center: the US, and bottom: Mexico). Figure 3. Eigenvector centrality (top: Canada, center: the US, and bottom: Mexico). play an essential role in social networks of COVID-19 in the US. For example, Corona Update Bot and Corona Virus Updates ranked ninth and thirteenth (6186204 and 3357575), respectively. On the other hand, WHO placed twelfth (4228332, 5 ranks higher than that of Canada). 19 since the US has the highest number of international key players (10) among the 3 countries. https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Results For example, Reuters, which is an international news organization, ranked fifth (17980783), and World News, which is the news for all English users, placed seventh (6556337). The Guardian, which is the British daily newspaper, ranked eighth (6293035), and NDTV, which is the Indian televi- sion media company, placed eleventh (4781407). Nzherald, which is the New Zealand Herald newspaper, ranked fifteenth (3027882), and The Sydney Morning Herald, which is the Australia daily com- pact newspaper, placed nineteenth (1869109). Guardian news, which is the British daily newspaper, ranked twentieth (1613139). Another important characteristic is that Corona bots In the Mexican networks, Andrés Manuel who is the President of Mexico had the most crucial impact on social networks of COVID-19 (26593479). Hugo L´opez-Gatell Ramírez who is the head of the Undersecretariat of Prevention and Health Promotion at the Mexican Secretariat of Health ranked second (20525750). SALUD México, which is the Ministry of Health of Mexico, ranked third (19856765), and DW Espa˜nol, which is https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press S Yum 6 Table 3. Results The top 20 key players in Canada L BC Name Description 1 C1 35577332 Health Canada and PHAC Agency of the Government of Canada 2 C2 14256089 Justin Trudeau Prime Minister of Canada 3 C3 10920955 CBC News Canadian Broadcasting Corporation 4 C4 10105638 CBC News Alerts Canadian Broadcasting Corporation Alerts 5 C5 8064724 The Globe and Mail Canadian newspaper in Western and Central Canada 6 C6 7398429 Rachel Notley The 17th Premier of Alberta 7 C7 7027855 Theresa Tam The 3rd Chief Public Health Officer of Canada 8 C8 7020672 CBC British Columbia Canadian Broadcasting Corporation British Columbia 9 I1 6595130 REFORMA Mexican newspaper 10 I2 5135869 Corona Update Bot Twitter account that runs automated tasks for gathering COVID-19 information over the Internet 11 C9 5054117 Toronto Star Canadian broadsheet daily newspaper 12 I3 4946213 The Economist International weekly newspaper 13 C10 4252638 Radio- Canada Info The National Public Broadcaster for both radio and television 14 I4 4195138 Donald Trump The US President 15 C11 4130006 CanadianPM Official account of the Prime Minister of Canada 16 C12 3977503 Chrystia Freeland Deputy Prime Minister of Canada 17 I5 3898973 WHO World Health Organization 18 C13 3827592 Patty Hajdu Canadian Liberal politician 19 C14 3265643 CBC Calgary The division of the Canadian Broadcasting Corporation 20 C15 2853843 CBC Toronto Canadian Broadcasting Corporation Toronto Note: L, Label; BC, Between Centrality; C, Canada key player; U, US key player; M, Mexico key player; I, International key player Table 4. The top 20 key players in the US Table 3. The top 20 key players in Canada Table 4. Results The top 20 key players in the US L BC Name Description 1 U1 40811174 Donald Trump The US President 2 U2 40418529 CNN American news-based television channel 3 U3 27796119 Elizabeth Warren United States Senator 4 U4 19576088 NBC News American broadcast television network NBC 5 I1 17980783 Reuters International news organization 6 U5 9292760 Seth Abramson Professor at University of New Hampshire 7 I2 6556337 World News World news for all English Users 8 I3 6293035 The Guardian British daily newspaper 9 I4 6186204 Corona Update Bot Twitter account that runs automated tasks for gathering COVID-19 information over the Internet 10 U6 5004303 CNN International American news-based pay television channel owned by CNN Worldwide International 11 I5 4781407 NDTV Indian television media company 12 I6 4228332 WHO World Health Organization 13 I7 3357575 Corona Virus Updates Twitter account that runs automated tasks for gathering COVID-19 information over the Internet 14 U7 3100556 U.S. FDA Federal Agency of the United States Department of Health and Human Services 15 I8 3027882 nzherald The New Zealand Herald newspaper 16 U8 2709190 ProPublica Nonprofit organization based in New York City. It is a newsroom that aims to produce investigative journalism pieces in the public’s interest 17 U9 2681733 ABC News American Broadcasting Company broadcast network 18 U10 2346261 President Trump The US President 19 I9 1869109 The Sydney Morning Herald Daily compact newspaper 20 I10 1613139 Guardian news British daily newspaper Note: L, Label; BC, Between Centrality; C, Canada key player; U, US key player; M, Mexico key player; I, International key player Note: L, Label; BC, Between Centrality; C, Canada key player; U, US key player; M, Mexico key player; I, International key player the regional version of official German TV Deutsche Welle for the Americas, placed fourth (12817876). An important finding is that key players in the Americas play a crucial role in social networks of COVID-19 for Mexico. For instance, Michelle Lujan Grisham who is the Governor of New Mexico ranked fifth (6852442), and CNN en Espa˜nol, which is the Spanish version of the American news channel, placed sixth (6396820). Donald Trump ranked eighth (4415974), and Ecuavisa Noticias, which is the best television channel of Ecuador, placed eleventh (4083047). https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Disaster Medicine and Public Health Preparedness Disaster Medicine and Public Health Preparedness 7 Table 5. The top 20 key players in Mexico L BC Name Description 1 M1 26593479 Andrés Manuel President of Mexico 2 M2 20525750 Hugo L´opez- Gatell Ramírez Mexican epidemiologist 3 M3 19856765 SALUD México Ministry of Health of Mexico 4 M4 12817876 DW Espa˜nol TV network 5 I1 6852442 Michelle Lujan Grisham Governor of New Mexico 6 I2 6396820 CNN en Espa˜nol American news-based pay television channel owned by CNN en Espa˜nol 7 M5 5328467 El Universal Mexican newspaper based in Mexico City 8 I3 4415974 Donald Trump The US President 9 M6 4350723 MVS Noticias MVS News station about the events in Mexico and the world. 10 M7 4086844 REFORMA Mexican newspaper 11 I4 4083047 Ecuavisa Noticias The best television channel of Ecuador. 12 M8 3333236 La Raz´on de México Mexican news 13 M9 3294387 Forbes México American business magazine México 14 I5 2973207 El Universo 1 of the largest daily newspapers in Ecuador 15 I6 2906046 Presidencia Cuba Official Account of the President of the Republic of Cuba 16 M10 2397243 Marcelo Ebrard C. Former Head of Government of the Federal District 17 M11 2362085 MetroCDMX The Mexico City Metro 18 M12 2300488 Milenio Major national newspaper in Mexico 19 M13 2128614 El Financiero Main newspaper in Mexico 20 M14 1742339 Animal Político Breaking news, reports, research, videos and useful information about Mexico and the world Table 5. The top 20 key players in Mexico (U6) play a significant role in group 1. Elizabeth Warren (U3) exerts a crucial impact on group 2. Donald Trump (U1), President Trump (U10), and Corona Update Bot (I4) are in the central part of group 3. Also, people show the most closed commu- nication networks across groups among the countries. In the Mexican networks, there is no key player in group 1, and this is the most distinguishable characteristic from Canada and the US. Instead, many key players are concentrated in group 2, and they are all Mexican key players. For example, Andrés Manuel (M1), Hugo L´opez-Gatell Ramírez (M2), and SALUD México (M3), as well as REFORMA (M7), Marcelo Ebrard (M10), and Animal Político (M14) are in group 2. Also, they show the most active communication networks with people across groups. Next, this study highlighted the top word pairs in tweets accord- ing to countries (see Table 6). Disaster Medicine and Public Health Preparedness In the Canadian networks, the top word pairs were ‘covid,19,’ followed by ‘covid, alert,’ ‘alert, app,’ ‘19, cases,’ and ‘download, here.’ Canadians are highly interested in COVID-19 apps since the government provided digital tools to help them access services and get information on COVID-19. For instance, Health Canada released COVID-19 apps, such as COVID Alert and Canada COVID-19. COVID Alert notifies peo- ple if someone they met in the past 14 days, tells the app they tested positive. Canada COVID-19 is designed for people to stay informed about COVID-19 in Canada and determine what actions and next steps they should take. In the US networks, people were searched about ‘covid,19’ ahead of ‘Donald, trump,’ ‘united, states,’ ‘trump, incompetent,’ and ‘incompetent, administration.’ The US people are highly inter- ested in their president’s pandemic policy and highly criticized the president and administration as incompetent for COVID-19. For instance, Pittsburgh Tribune-Review, which is the second largest daily newspaper serving metropolitan Pittsburgh, Pennsylvania, in the US, criticized President Trump and his administration as follows ‘After a single case of coronavirus in China became a pan- demic and reached our shores in January, we had a federal response we believe was incompetent. Trump and his administration not only failed to control the virus, but let it become the most danger- ous outbreak on the planet.’45 In the Mexican networks, people focused on ‘covid,19,’ followed by ‘en, méxico (in Mexico),’ as well as ‘de, covid (of covid),’ ‘la, pan- demia (the pandemic),’ and ‘casos, y (cases and).’ Mexican people searched for COVID-19 cases and the pandemic in Mexico. This is because on July 31, 2020, Mexico moved into third place in the number of fatalities, behind the United States and Brazil, with 46688 deaths, and occupied sixth place globally in the total number of confirmed cases, with 424637 cases. patterns. Nzherald (I8) is far apart from other key players. In the Mexican networks, nodes show a large circle, and there are many nodes under the circle. Key players show the most disperse pattern, and El Universo (I5) has some independent channels. https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Results El Universo, which is 1 of the largest daily newspapers in Ecuador, placed fourteenth (2973207), and Presidencia Cuba, which is the official account of the Presidency of the Republic of Cuba, ranked fifteenth (2906046). Another remarkable characteristic is that Mexico does not have corona bots or WHO in its top key players, inconsistent with Canada and the US. Cluster analysis is a methodology for the task of assigning a set of objects into groups so that the objects in the same cluster are like each other than those in other clusters. The Clauset- Newman-Moore algorithm has been widely used to analyze social media metrics and represent the sociograms.44 Figure 4 shows the social networks of COVID-19 for the typical case. In the Canadian networks, nodes are highly concentrated as a circle, and some nodes are dispersed around the circle. All key players are also highly centralized in the main part of the circle. In the US networks, nodes and key players show more dispersed Next, this study employed cluster analysis by utilizing the Clauset–Newman–Moore cluster algorithm (see Figure 4 and 5). Discussion COVID-19 has become 1 of the worst disasters in human history. It totally damages people’s daily life, and people are waiting for new COVID-19 vaccines. By August 2020, there was no choice but to keep social distancing and COVID-19 information updated. In this sense, understanding COVID-19 networks would be an essential task for governments to provide relevant information on COVID-19 to the public. Therefore, this study highlights how peo- ple communicate with each other on COVID-19 information by employing SNA for Twitter in North America. Figure 5 shows the social networks of COVID-19 according to groups. In the Canadian networks, many players are in the largest group (group 1). For example, Health Canada and PHAC (C1), Justin Trudeau (C2), and Theresa Tam (C7), as well as CanadianPM (C11), and Patty Hajdu (C13) are in the group 1. They are all governmental key players. Key players in Canada are in large groups. For instance, all key players are located within group 15. Also, people have the most open communication net- works across groups among the 3 countries. This study unearthed some important findings, consistent with prior studies. First, this study shows that countries have different key players in social networks for COVID-19, consistent with prior studies.46 For example, Yum46 highlights that the UK has only In the US networks, key players are relatively distributed in many groups. For instance, CNN (U2) and CNN International 8 S Yum S Yum 8 e 4. Social networks for the typical case (top: Canada, center: the US, and bottom: Mexico). Figure 4. Social networks for the typical case (top: Canada, center: the US, and bottom: Mexico). national key players, France has many national key players, and other countries have all global key players. public’s sentiments and opinions, which concurs with prior liter- ature.50–52 For example, Xue et al.52 showed that Twitter can play a significant role in infodemiology studies, enabling scholars and governments to understand public opinions and sentiments during the COVID-19 pandemic. Second, the head of countries also plays an important role in social networks for COVID-19 in social network services as well as in the real world, which is a similar finding of previous articles.47–49 For instance, Rufai and Bunce48 found out that Twitter can represent a significant tool for world leaders to immediately communicate public health information with their citizens. https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Discussion Lastly, this study has some limitations which are follows: (1) this study focuses on key players in social networks for COVID- 19. Future studies can be extended to other players to understand the social networks with more comprehensive understanding; (2) this study employs social network analysis only for Twitter. Other SNS, such as Facebook, YouTube, or Instagram, might show differ- ent findings and results. Future studies should explore social Third, people actively utilize their social network services for COVID-19 to share their opinions with each other and get valuable information across, and Twitter can be utilized to understand the Conclusion 4. Jordan RE, Adab P, & Cheng KK. Covid-19: risk factors for severe disease and death. BMJ. 2020;368. This study aimed to highlight COVID-19 response in North America since North America is the most severe continent affected by the COVID-19 pandemic. Hence, social network analysis was used to highlight social networks for COVID-19 on Twitter to pro- vide useful implications and findings for scholars, governments, and centers for disease control and prevention. 5. Tang YW, Schmitz JE, Persing DH, Stratton CW. Laboratory diagnosis of COVID-19: current issues and challenges. J Clin Microbiol. 2020;58(6). doi: 10.1128/JCM.00512-20 6. Xiang L, Tang M, Yin Z, Zheng M, Lu S. The COVID-19 pandemic and economic growth: theory and simulation. Frontiers in Public Health. 2021; doi: 10.3389/fpubh.2021.741525. The results from this study can be summarized as follows: (1) the Prime Minister plays the second important role in social net- works for COVID-19 in the Canadian networks, whereas the Presidents play the most significant role in them in the US and Mexican networks; (2) Corona Update Bots exert a crucial impact on social networks of COVID-19 in Canada and the US, while they are not in the top 20 key players in Mexico; (3) Donald Trump played a significant role in all 3 countries; (4) WHO shows a pivotal effect on social networks of COVID-19 in Canada and the US, whereas it does not affect them in Mexico; (5) Canada shows the most open communication systems across groups, whereas the US reveals the most closed communication systems among groups; and (6) Canadians are highly interested in COVID-19 apps, the US people highly criticize the president and administra- tion as incompetent for COVID-19, and Mexicans tend to search for COVID-19 cases and the pandemic in Mexico. 7. Chen Q, Min C, Zhang W, Wang G, Ma X, Evans R. Unpacking the black box: how to promote citizen engagement through government social media during the COVID-19 crisis. Computers in Human Behav. 2020:106380. 8. Dong E, Du H, Gardner L. An interactive web-based dashboard to track COVID-19 in real time. Lancet Infect Dis. 2020;20(5):533-534. 9. Zhou X, Snoswell CL, Harding LE, et al. The role of telehealth in reducing the mental health burden from COVID-19. TeleMed E-Health. 2020;26(4): 377-379. 10. Government of Canada. Canada’s COVID-19 economic response plan. Government of Canada: Ontario; 2020. 11. Fang L, Karakiulakis G, Roth M. Conclusion Are patients with hypertension and dia- betes mellitus at increased risk for COVID-19 infection? The Lancet Respir Med. 2020;8(4):e21. 12. Mehta P, McAuley DF, Brown M, et al. COVID-19: consider cytokine storm syndromes and immunosuppression. Lancet. 2020;395(10229): 1033-1034. p This study suggests important implications which are as fol- lows: (1) countries should investigate their key players since they have different characteristics for social networks of COVID-19; (2) the Canadian government should utilize CBC news channels for COVID-19 since they are number 5 out of the top 20 key players. The US government should employ the accounts of Donald Trump because he placed first and eighteenth, respectively. The Mexican government should use the accounts of the President of Mexico and the Ministry of Health of Mexico since they ranked first and third, respectively; (3) governments should explore their com- munication networks systems both for individuals and groups since they have different characteristics according to countries; (4) countries and policy makers should investigate social keywords of people through social network services since they reveal their concerns and interests in the internet space; and (5) people should get COVID-19 information and recommendations from a multi- tude of key players as well as 1 or 2 key players since a key player might not align with current pandemic recommendations or have some political movements. For example, Donald Trump who ranked first in the US networks did not recommend wearing a mask in public, while many studies show that the use of face mask prevents the spread of COVID-19.53–55 In this case, people might get the wrong information and be affected by others’ political movements. Therefore, people should try to get objective COVID-19 news and policies by exploring a multitude of key play- ers who are suggested in this study. 13. Velavan TP, MeyerM CG. The COVID-19 epidemic. Tropical Med Int Health. 2020;25(3):278-280. 14. Bedford J, Enria D, Giesecke J, et al. COVID-19: towards controlling of a pandemic. The Lancet. 2020;395(10229):1015-1018. 15. Wu Z, McGoogan JM. Characteristics of and important lessons from the coronavirus disease 2019 (COVID-19) outbreak in China: summary of a report of 72314 cases from the Chinese Center for Disease Control and Prevention. JAMA. 2020;323(13):1239-1242. 16. Li Q, Guan X, Wu P, et al. Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia. N Engl J Med. 2020; 382(13):1199-1207. doi: 10.1056/NEJMoa2001316 17. Burke RM. References References networks for other SNS as well as Twitter; (3) this study analyzes social networks only for COVID-19. Future research could com- pare social networks between COVID-19 and other types of coro- naviruses, such as Severe Acute Respiratory Syndrome or Middle East respiratory syndrome coronavirus, to effectively establish health policies for governments and health planners. 1. Anderson RM, Heesterbeek H, Klinkenberg D, Hollingsworth TD. How will country-based mitigation measures influence the course of the COVID-19 epidemic? The Lancet. 2020;395(10228): 931-934. 2. Cheng C, Barcel´o J, Hartnett AS, Kubinec R, Messerschmidt L. COVID- 19 government response event dataset (CoronaNet v. 1.0). Nat Human Behav. 2020;4(7):756-768. 3. Hopman J, Allegranzi B, Mehtar S. Managing COVID-19 in low-and middle-income countries. JAMA. 2020;323(16):1549-1550. Disaster Medicine and Public Health Preparedness Disaster Medicine and Public Health Preparedness 9 Table 6. The top word pairs Canada The US Mexico Word Pairs Count Word Pairs Count Word Pairs Count 1 covid,19 11719 covid,19 13418 covid,19 12476 2 covid, alert 2316 Donald, trump 1514 en, méxico 4606 3 alert, app 1542 united, states 1331 de, covid 4124 4 19, cases 837 trump, incompetent 1035 la, pandemia 1701 5 download, here 784 incompetent, administration 1035 casos, y 1646 tworks according to groups (top: Canada, center: the US, and bottom: Mexico). Figure 5. Social networks according to groups (top: Canada, center: the US, and bottom: Mexico). https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press S Yum S Yum 10 Conclusion Active monitoring of persons exposed to patients with con- firmed COVID-19—United States, January–February 2020. MMWR. 2020;69(9):245-246. 18. COVID TC, Stephanie B, Virginia B, et al. Geographic differences in COVID-19 cases, deaths, and incidence-United States, February 12 - April 7, 2020. https://www.cdc.gov/mmwr/volumes/69/wr/pdfs/mm6915 e4-H.pdf p 19. Gostic K, Gomez AC, Mummah RO, Kucharski AJ, Lloyd-Smith JO. Estimated effectiveness of symptom and risk screening to prevent the spread of COVID-19. Elife. 2020;9:e55570. 20. Jin X, Lian JS, Hu JH, et al. Epidemiological, clinical, and virological char- acteristics of 74 cases of coronavirus-infected disease 2019 (COVID-19) with gastrointestinal symptoms. Gut. 2020;69(6):1002-1009. 21. Lauer SA, Grantz KH, Bi Q, et al. The incubation period of coronavirus disease 2019 (COVID-19) from publicly reported confirmed cases: estima- tion and application. Ann Intern Med. 2020;172(9):577-582. 22. Ranney ML, Griffeth, V, Jha AK. Critical supply shortages—the need for ventilators and personal protective equipment during the Covid-19 pan- demic. New Engl J Med. 2020;382(18):e41. Authors contributions:. Seungil Yum wrote the whole paper. Authors contributions:. Seungil Yum wrote the whole paper. Conflict of interest:. There is no conflict of interest. Abbreviations list:. IT, Information Technology 23. So MK, Chan LS, Chu AM. Financial network connectedness and systemic risk during the COVID-19 pandemic. Asia-Pacific Financial Markets. 2021;28(4):649-665. https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press Disaster Medicine and Public Health Preparedness 11 40. Perez C, Germon R. Graph creation and analysis for linking actors: appli- cation to social data. In automating open source intelligence. Syngress: Burlington; 2016:103-129. 24. Tiwari A, So MK, Chong AC, Chan JN, Chu AM. Pandemic risk of COVID-19 outbreak in the United States: an analysis of network con- nectedness with air travel data. Int J Infect Dis. 2021;103:97-101. 25. Xiang L, Ma S, Yu L, Wang W, Yin Z. Modeling the global dynamic contagion of COVID-19. Frontiers in Public Health. 2021; doi: 10.3389/ fpubh.2021.809987. 41. Hansen DL, Shneiderman B, Smith MA, Himelboim L. Social network analysis: measuring, mapping, and modeling collections of connections. In: Analyzing social media networks with NodeXL: insights from a connected world. Elsevier Inc, Burlington. 2011;31-52. 26. Chimmula VKR, Zhang L. Time series forecasting of COVID-19 transmis- sion in Canada using LSTM networks. Chaos, Solitons & Fractals. 2020:109864. world. Elsevier Inc, Burlington. 2011;31-52. 42. Golbeck J. Chapter 3- Network structure and measures. Analyzing the social web. Morgan Kaufmann: Boston; 2013. 27. Shoukat A, Wells CR, Langley JM, Singer BH, Galvani AP, Moghadas SM. Conclusion Projecting demand for critical care beds during COVID-19 outbreaks in Canada. CMAJ. 2020;192(19):489-496. 43. Udanor C, Aneke S, Ogbuokiri BO. Determining social media impact on the politics of developing countries using social network analytics. Program. 2016;50(4):481-507. 28. Tuite AR, Fisman DN, Greer AL. Mathematical modelling of COVID-19 transmission and mitigation strategies in the population of Ontario, Canada. CMAJ. 2020;192(19):497-505. 44. Triblive. Sounding off: Trump’s incompetent covid-19 response. Published 2020. https://triblive.com/opinion/sounding-off-trumps-incompetent- covid-19-response/. Accessed June 28, 2022. 29. Acu˜na-Zegarra MA, Santana-Cibrian M, Velasco-Hernandez JX. Modeling behavioral change and COVID-19 containment in Mexico: a trade-off between lockdown and compliance. Mathematical Biosci. 2020;108370. 45. Yum S. Different characteristics of social networks for COVID-19 in Europe. Euro Rev. 2022; doi: 10.1017/S1062798721000284. 46. Manfredi-Sánchez JL, Amado-Suárez A, Waisbord S. Presidential twitter in the face of COVID-19: between populism and pop politics. Comunicar: Media Educ Res J. 2021;29(66):79-90. 30. Méndez-Arriaga F. The temperature and regional climate effects on com- munitarian COVID-19 contagion in Mexico throughout phase 1. Sci Total Env. 2020:139560. 47. Rufai SR, Bunce C. World leaders’ usage of twitter in response to the COVID-19 pandemic: a content analysis. J Public Health. 2020;42(3): 510-516. 31. Torrealba-Rodriguez O, Conde-Gutiérrez RA, Hernández-Javier AL. Modeling and prediction of COVID-19 in Mexico applying mathematical and computational models. Chaos, Solitons & Fractals. 2020:109946. 48. Yum S. Social network analysis for coronavirus (COVID-19) in the United States. Soc Sci Quart. 2020;101(4), 1642-1647. 32. Otte E, Rousseau R. Social network analysis: a powerful strategy, also for the information sciences. J Info Sci. 2002;28(6):441-453. 49. Boon-Itt S, Skunkan Y. Public perception of the COVID-19 pandemic on Twitter: sentiment analysis and topic modeling study. JMIR Public Health Surveil. 2020;6(4):e21978. 33. Hatala JP. Social network analysis in human resource development: a new methodology. Human Res Dev Rev. 2006;5(1):45-71. 50. Naseem U, Razzak I, Khushi M, Eklund PW, Kim J. COVIDSenti: a large- scale benchmark Twitter data set for COVID-19 sentiment analysis. IEEE Transact Comput Soc Systs. 2021;8(4):1003-1015. 34. Ressler S. Social network analysis as an approach to combat terrorism: past, present, and future research. Homeland Secur Affairs. 2006;2(2), 1-10. 35. Coşkun M, Ozturan M. #europehappinessmap: a framework for multi-lin- gual sentiment analysis via social media big data (a Twitter case study). Information. 2018;9(5):1-25. 51. Xue J, Chen J, Hu R, et al. Twitter discussions and emotions about the COVID-19 pandemic: machine learning approach. J Med Internet Res. 2020;22(11):e20550. 36. Liikkanen LA, Jakubowski K, Toivanen JM. Conclusion Catching earworms on twit- ter: using big data to study involuntary musical imagery. Music Percept. 2015;33(2):199-216. 52. Li T, Liu Y, Li M, Qian X, Dai SY. Mask or no mask for COVID-19: a public health and market study. PloS One. 2020;15(8):e0237691. 53. Liao M, Liu H, Wang X, et al. A technical review of face mask wearing in preventing respiratory COVID-19 transmission. Curr Opinion Colloid & Interface Sci. 2021;52:101417. 37. Mocanu D, Baronchelli A, Perra N, Gonçalves B, Zhang Q, Vespignani A. The twitter of babel: mapping world languages through microblogging platforms. PloS One. 2013;8(4), e61981. 54. Wang Y, Deng Z, Shi D. How effective is a mask in preventing COVID-19 infection? Med Devices Sens. 2021;4(1):e10163. 38. Zou L, Song WW. Lda-tm: a two-step approach to twitter topic data clus- tering. Conference Proceedings of the IEEE International Conference on Cloud Computing and Big Data Analysis (ICCCBDA). 2016:342–347. 55. Compton R, Lee C, Lu TC, De Silva L, Macy M. Detecting future social unrest in unprocessed twitter data: ‘emerging phenomena and big data.’ Conference Proceedings of the IEEE International Conference on Intelligence and Security Informatics. Seattle, WA; 2013:56-60. 39. Smith MA. Identifying and shifting social media network patterns with NodeXL. Conference Proceedings of the International Conference on Collaboration Technologies and Systems (CTS). 2014:3-8. https://doi.org/10.1017/dmp.2022.290 Published online by Cambridge University Press
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Too late and not enough for some children: early childhood education and care (ECEC) program usage patterns in the years before school in Australia
International journal of child care and education policy/International journal of child care and education
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© 2015 Gilley et al. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http:// creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. RESEARCH Open Access Too late and not enough for some children: early childhood education and care (ECEC) program usage patterns in the years before school in Australia Timothy Gilley1,2*  , Collette Tayler2, Frank Niklas2 and Daniel Cloney2 *Correspondence: tgilley@ unimelb.edu.au 1 Victorian Department of Education, 2 Treasury Place, East Melbourne 3002, Australia Full list of author information is available at the end of the article Gilley et al. ICEP (2015) 9:9 DOI 10.1186/s40723-015-0012-0 Policy and research context The benefit of early childhood education, particularly targeted toward children living in disadvantaged circumstances—vulnerable children—in the years before school has been well established through evaluations of model programs in the US dating back to the late 1960s (Anderson et al. 2003). Benefits of model programs were established in the areas of cognitive, educational and social gains for individual children, savings in public expendi- ture through lowered grade retention rates in schools, lower welfare and criminal justice expenditure and broader benefits of human capital development (Heckman and Masterov 2006). More recently, improved child outcomes have been linked to the provision of high- quality pre-kindergarten classrooms (Burchinal et al. 2010, 2014). Abstract This paper uses data from a major Australian longitudinal study to test the extent to which children recruited on the basis of attending an early childhood education and care (ECEC) setting when they were 3–4 years of age received an ‘optimal’ dosage of education and care. The idea of an optimal dosage is drawn from research literature on what level of dosage leads to improved learning and development outcomes for chil- dren. This dosage level is then compared with the actual level received by Australian children, through examining the age of entry of Australian children into ECEC and the number of hours of education and care they receive before school entry. Key predic- tors of the total hours of ECEC usage and the year of commencement in formal ECEC programs are reported, and demonstrate the variability and correlates of participation in ECEC programs. Patterns of ECEC usage were predicted by family advantage and disadvantage factors. Children from homes with less employment, and more siblings, tend to use fewer hours of ECEC before school and/or start later. The findings suggest sub-optimal levels of participation given the policy goal of improving learning and developmental outcomes for all children and particularly for children from disadvan- taged backgrounds. Policy implications are addressed. Keywords:  Child care, Kindergarten, Early childhood education and care (ECEC), Disadvantaged, E4Kids study, Policy Early childhood program participation The knowledge base is strongest around positive cognitive/academic gains from participa- tion in kindergarten in the year before school (Duncan and NICHD ECCRN 2003; Gorm- ley et al. 2005; Loeb et al. 2007; Magnuson et al. 2004; Spiess et al. 2003), including studies in Australia (Warren and Haisken-DeNew 2013). However, there is also a smaller, though increasing, evidence base of the value of intervening in the first 3 years of life (Campbell et al. 2012; Coley et al. 2015; Li et al. 2014; Sylva et al. 2004). The national and international implications of findings from Australian research studies require an understanding of the Australian early childhood education and care (ECEC) system. In essence, it is a complex system of care and education managed by a range of different organisations, including local government, community-based organi- sations, for-profit providers and schools. Programs are delivered through centre-based programs providing Long Day Care, Occasional Care and stand-alone Kindergarten pro- grams and also in the form of home-based care through Family Day Care. Kindergarten programs are also delivered within Long Day Care programs and traditional stand-alone Kindergartens are increasingly extending their programs to include child care. Fund- ing for child care is mostly a national responsibility whilst kindergarten programs are funded by State and Territory Governments. Australian national research has recently found that there are significant and stronger cognitive gains for children attending ECEC programs from the infant/toddler age through to preschools, rather than preschool attendance only, as well as for those chil- dren with a greater intensity of exposure. These findings from the Longitudinal Study of Australian Children (LSAC) were irrespective of ECEC quality, which was not assessed within the LSAC study, emphasising the importance of focussing on dosage issues in ECEC provision when considering children’s cognitive outcome effects (Coley et  al. 2015). In Australia the ECEC participation rates include about 8% of children under 1 year of age, about 37% of children 1–2 years of age and about 55% of children 2–3 years of age (Productivity Commission 2014). About 41% of children attend child care in the 3–5 age range and 70% attend 4-year-old kindergarten, (Productivity Commission 2014) though this latter figure can be expected to extend to over 90% with the national adoption of a Universal Access policy. Gilley et al. ICEP (2015) 9:9 Page 2 of 15 Evidence from neuroscience on how human brain architecture is established in the first three years of life (NSCDC 2008) has created new public interest within and beyond OECD countries in investing in children’s education in this period. While interest in model programs for highly vulnerable children continues (Leseman 2002; Burchinal et al. 2006, 2010), there has also been a shift to examining the extent to which mainstream programs can help deliver on this promise of early childhood for all chil- dren (Burger 2010), notably in the US (Howes et al. 2008; Vandell et al. 2010), the UK with the EPPE study (Sylva et al. 2004), Canada (Cleveland and Forer 2010), Germany (Caniato et al. 2010), Denmark (Bauchmillar et al. 2011; Jensen 2013) and China (Li et al. 2014). Early childhood program participation The estimated 30 per cent of children under 3 years of age who attended ECEC programs in Australia in 2009 is at a similar level to a number of other Gilley et al. ICEP (2015) 9:9 Page 3 of 15 OECD countries such as the UK (35%), US (31%) and Canada (24%), but is lower than in a number of others, such as Denmark (73%) (Moss 2012). Four groupings of Australian children are less likely to participate in ECEC programs: those in low income families, having a disability, at risk of abuse or neglect or being developmentally disadvantaged because of the characteristics of their family, culture or community (Productivity Commission 2014). Similar groupings of Australian children have also been identified as less likely to participate in ECEC programs in other research: those from low socio-economic backgrounds, remote communities, Indigenous back- ground, non-English speaking background, and having a disability or special health care needs (Baxter and Hand 2013; Biddle 2011). The challenge to public policy is how to ensure that children enter the ECEC system early enough, for a sufficient period of time on a weekly basis and at high enough qual- ity to make a positive difference to their learning and life trajectories. Despite manifest interest in all children, a particular interest in vulnerable children continues because their poor outcomes are of great public concern, represent additional public costs and are a loss of human capital. They are also the children who have potentially the most to gain from early intervention (Burchinal et al. 2014). Impacts of program participation for children from disadvantaged families A review of research studies (Burger 2010) on the compensatory impacts of ECEC on the cognitive abilities of children found a mix of findings for whether vulnerable or non-vulnerable children benefited more in mainstream settings, with some studies finding that vulnerable children gained more, whilst others found that vulnerable and non-vulnerable children gained equally (and hence their relative positions remained unchanged) and, in one study, non-vulnerable children gained more. An earlier review on the same question also found mixed findings with possible explanations being a lack of capacity of the families of vulnerable children to input into ECEC programs, and poor attachment of children translating into barriers to learning within ECEC settings (Leseman 2002). The difficulties of establishing cause and effect relationships between ECEC partici- pation and longer term academic/cognitive attainment are well illustrated in 50 case studies drawn from the EPPSE study (a follow-on from the EPPE study) in the UK (Siraj- Blatchford et al. 2010). In this research four groupings of children were identified at age 16 years. In one grouping, children from low socio-economic status (SES) backgrounds had expected low attainment, with factors such as low home learning support from par- ents, poor self-image, low-quality ECEC environments, perceived poor quality teach- ing in schools, lack of peer support and poor access to written materials and computers prominent. The same factors, but in reverse, were true for children from high SES envi- ronments with high attainment at age 16 years of age. For children from low SES envi- ronments ‘who succeeded against the odds’ factors included the persistence of parents in providing children good early and later learning experiences despite poorer home learn- ing environments, greater ability of children to take advantage of learning opportunities in ECEC settings, higher quality ECEC and school settings, parental selection of ECEC programs based on a belief of its importance, careful parental evaluation of its suitability for their child, and children’s perception that they were assisted by teachers when facing Gilley et al. ICEP (2015) 9:9 Page 4 of 15 difficult tasks at school. For children from high SES environments with low attainment, issues included ineffective learning strategies and externalising problem behaviour when approaching puberty (Siraj-Blatchford et al. 2010). Optimal patterns of ECEC attendance Government has an understandable cost effectiveness interest in what is the optimum level of attendance or dosage that will bring about worthwhile cognitive/school success changes in child outcomes, especially for vulnerable children. Some studies of mainstream programs have found that part-time versus full-time provision in any given year makes no significant difference to cognitive gains (Cleveland and Forer 2010; Sylva et al. 2004; Howes et al. 2008). Others have been able to differentiate effects between children from lower and higher income families, with longer hours leading to higher cognitive gains for low income children but no additional gains for higher income children beyond 15 h per week (Loeb et al. 2004). In the evaluation of model programs with vulnerable children only, part-time attendance has been shown to be less effective than full-time attendance; for example the evaluation of the Abecedarian approach found 350+ hours per annum (an average of 3.3+ days per week) had a lower impact on children’s cognitive development than 400+ hours per annum (an average of 3.8+ days per week) (Campbell et al. 2012). Although policy makers may seek thresholds for optimal patterns of attendance in early childhood programs to guide funding decisions about the provision of early child- hood programs, research findings provide no clear guidance. It needs to be acknowl- edged that a minimum threshold of attendance and participation is yet to be firmly established in research—probably because of the complexity of the interactions between ECEC quality, attendance, dosage and degree of child vulnerability. Reasons for a lack of consistency in studies on the effects of different dosages of attendance include: varying degrees of program quality, a split focus on current participation and cumulative par- ticipation, different measures of attendance (hours per week, full and part day, attend- ance at particular types of program, cumulative hours over a number of years and age of entry) and reliance on enrolment of the child in a program as the proxy for attend- ance, rather than their actual attendance. Assessing the effects of early entry to ECEC programs is further complicated by this being less common, with less data available. It is also difficult to differentiate the effects of the timing of entry into ECEC from family background factors and program quality factors (Zaslow et al. 2010). Impacts of program participation for children from disadvantaged families Maintaining a sufficiently high focus on vulnerable children in mainstream settings, where there is likely to be a mix of highly vulnerable, less vulnerable and essentially non- vulnerable children, has a number of different challenges from model programs com- prising only vulnerable children. Educators need to be able to identify the vulnerable children and then be able to provide a sufficiently intensive intervention that is matched to the range of capabilities and interests of the children. Without this, there is evidence that it may be the advantaged children who are best placed to take advantage of the learning opportunities in mainstream settings (Burger 2010). Behavioural outcomes Whilst this paper focuses on new Australian data on dosage patterns, and how this com- pares with what the broader literature has to say about optimum dosage patterns for improving cognitive outcomes, it is worth noting that there have been consistent research findings that more extensive hours of ECEC, often expressed as being over 30 h per week, contribute to social and emotional difficulties for children, evidenced by more difficult/ externalising behaviour. However, high quality has been shown to moderate externalising behaviour, whilst association with large groups of peers increases such behaviour (McCa- rtney et al. 2010). Multiple care arrangements have also been shown to be associated with poorer behavioural outcomes across a number of studies, though recent more nuanced research indicates that this is the case for unstable multiple arrangements only (Pilarz and Hill 2014). Research questions and study context The findings reported below relate to the following questions: The findings reported below relate to the following questions: • • What are the ‘weekly hours’ patterns of attendance in typical Australian ECEC pro- grams in each of the years before school? • • What are the predictors of overall hours of ECEC attendance, and overall kindergar- ten hours of attendance. • • What are the predictors of early age entry into ECEC programs? The policy interest is the extent to which patterns of children’s attendance promote the improvement in children’s cognitive outcomes that high quality model programs predict—for children already enrolled in ECEC programs when 3–4 years of age. The interest here is also the extent to which more vulnerable children are more or less likely to have optimum levels of attendance; that is, do patterns of attendance potentially pro- mote greater equality or inequality of cognitive outcomes? Following the findings from other research, the interest is in total ECEC participation, which includes both child care and kindergarten programs, and in kindergarten programs separately. Optimal patterns of ECEC attendance Despite these differences and ambiguities in research findings, policy decisions still need to be made by governments and it is important that there is a ‘best estimate’ distil- lation of research findings. In relation to model programs, two major conclusions can be drawn: earlier is better and more is better. Plausibly, this relates to the high quality Gilley et al. ICEP (2015) 9:9 Page 5 of 15 and level of resourcing with a concentrated focus on vulnerable children and the much higher quality of the program environment relative to that of home. In relation to main- stream programs, there is some evidence that cognitive advantages do not accrue to children under 2 years of age and that part-time attendance may be as advantageous to cognitive development as full-time attendance—though there is also evidence supports the ‘more and earlier’ view (Li et al. 2014). Methods The dosage of ECEC programs that children experience is analysed using data collected from a cohort of some 2,600 young children recruited through ECEC settings in Victoria and Queensland (the E4kids study) (see Tayler et al. 2013 for more information). The sam- ple selection began with the identification of every approved long day care, family day care, kindergarten and occasional care program in the greater capital city regions, in a large regional centre in Victoria and in a remote city in north western Queensland. A random Gilley et al. ICEP (2015) 9:9 Page 6 of 15 selection was then drawn to include programs operating in a range of high and low socio- economic status (SES) communities based upon the postcode data of where these services were located. The rooms in which 3- and 4-year-old children were enrolled were then identified and the parents of all children in these rooms were invited to join the study. An annual data collection was implemented (2010–2012), including attendance, individual assessment of the children’s learning and development, family circumstances and observa- tional measures of the quality of the programs attended by children. The data presented on ECEC attendance used in this paper are drawn from parent self-report data collected from three-waves of an annual survey. Parent responses were checked against observed patterns of attendance by fieldworkers during the 3 years of data collection and this served to limit parental reporting errors during this period. There were, however, no checks against inac- curate parental memories of earlier ECEC attendance patterns [as has been provided in other studies through triangulation of parental data against multiple sources of data (Miles and Huberman 1994)].h The program dosage patterns presented in this paper are ‘re-weighted’ to ensure that the sample drawn is representative of typical Australian capital city ECEC populations— as well as including a regional and remote site. Measures of the latent traits of the child, the characteristics of the family and home environment, and inventories of ECEC usage were conducted by annual survey. We re-weight the influence of children to parame- ter estimates to account for the complex, cluster-based sample design, and to produce population estimates and confidence intervals that allow generalisation to the broader population from which the sample is drawn. Though the sample is not technically repre- sentative of the Australian population, findings can claim to be indicative of Australian ECEC programs. Results and discussion Findings Because children’s minimum age at school entry in Australia varies across States and Ter- ritories, and some children repeat the 4-year-old kindergarten program, we present the attendance data as formal ECEC usage and non-parental care in each of the years before school rather than focussing on children’s ages; specifically we present ECEC usage by chil- dren who were 1 year before school, 2 years before school, 3 years before school, and so on. As would be expected children’s ages bear a systematic relationship with these categories, with an average age at entry to the first year of school being 5.2 years, 4.2 years for one year before school, 3.2 years at entry to 2 years before school, 2.2 years at entry to 3 years before school and 1.2 years at entry to 4 years before school. Children’s ages were calculated as of 1 January for each year for this purpose. Data on ECEC usage are included for those children for whom their main caregiver completed at least one survey and, as noted earlier, the data were re-weighted to be rep- resentative of the Victorian and Queensland populations. In the first year of data col- lection, the state-wide participation rates in 4-year-old kindergarten were markedly different in the two Australian States, Victoria and Queensland, being an estimated 94 and 30%, respectively. Table 1 presents the patterns of attendance for formal ECEC and Results and discus- sion for each of the years before school. Similar to other Australian ECEC data reviewed above (Productivity Commission 2014), formal ECEC usage is common, with the proportion of children in formal ECEC settings increasing with age; being highest for the year before school and lowest for 4 years before school—the reverse trend is also present for use of informal non-parental care as this usage decreases over time in the years before school. These data also demon- strate that participation in ECEC at age 3–4 years predicts higher ECEC program usage rates in earlier years than is true for the general population. NB: Data collected in this study indicate that some informal non-parental care is also common, averaging 63% across the 4 years before school and decreasing as children get older; being 75% 4 years before school reducing to 48% in the year before school. Methods In large non-experimental studies, such as the E4Kids Study, it is essential to control for child, family and other selection factors which may drive the choice to use ECEC programs (the type, the hours, the price and quality) and are correlated with children’s developmental outcomes (Duncan and Gibson-Davis 2006). Otherwise, child outcomes can be incorrectly attributed to ECEC participation which is due to parental choices of programs. Major non-experimental studies have focused on accounting for selec- tion bias in order to isolate the effect of ECEC programs on children’s outcomes. Simi- larly, this study seeks to utilise the variation of family choices and selection processes to describe not only the presence (or not) of important patterns of ECEC use, but to explain the likelihood of different families engaging in what were identified earlier in this article as optimum patterns of use. A review of 20 studies conducted using the Study of Child Care and Youth Develop- ment (SECCYD) data found a total pool of 33 child and family selection variables that were used: many of these were highly correlated and no individual study used more than eleven to account for selection. The review concludes that a range of key variables are required to sufficiently account for selection while avoiding issues of multi-collinear- ity. Variables identified of significant importance were those related to the child (tem- perament, gender and attachment), the caregivers (income relative to need, education, marital status, mother’s receptive vocabulary, personality and ‘sensitivity’) and the home (home learning environment) (Duncan and Gibson-Davis 2006). Selection variables explain a complex production of ECEC choices. Page 7 of 15 Gilley et al. ICEP (2015) 9:9 Results and discussion Findings Table 1  Usage patterns for formal ECEC programs in the years before school Table 1  Usage patterns for formal ECEC programs in the years before school Years before school State loca- tion of ECEC Formal ECEC pro- gram usage % No formal ECEC program usage % Total % 1 year before school QLD 649 85.2 113 14.8 762 100 VIC 545 94.3 33 5.7 578 100 Total 1,194 89.1 146 10.9 1,340 100 2 years prior to school QLD 564 71.7 223 28.3 787 100 VIC 567 81.5 129 18.5 696 100 Total 1,131 76.2 352 23.8 1,483 100 3 years prior to school QLD 459 58.4 327 41.6 786 100 VIC 440 63.1 257 36.9 697 100 TOTAL 899 60.6 584 39.4 1,483 100 4 years prior to school  QLD 366 46.7 417 53.3 783 100 VIC 318 46.3 369 53.7 687 100 Total 684 46.5 786 53.5 1,470 100 Gilley et al. ICEP (2015) 9:9 Page 8 of 15 Table 2 examines the above data on the use on formal ECEC programs in terms of the average and median hours of weekly attendance in each of the years before school. Val- ues in parenthesis are estimates for children who attended ECEC for 1 h or more in the period whilst overall sample numbers include children who did not attend programs in particular years. As might be expected in the Australian ECEC system, and also illustrated by LSAC and other Australian attendance data, younger children are less likely to attend programs (as also indicated in Table 1) and attend for fewer hours; for example, fewer than half the children attend 4 years of ECEC before school compared to over 90% of children in the year before school and the average weekly hours of attendance increase from about 22 h per week 4 years before school entry to about 26 h per week in the year before school. Table 3 presents these same data disaggregated into smaller categories of dosage, these being of interest in light of known effects on child outcomes. Values in parenthesis are estimates for children who attended ECEC for 1 h or more in the period whilst overall sample numbers include children who did not attend programs in particular years. The data indicate a low rate of ECEC participation for children 3 and 4 years before school entry. Values in parenthesis are estimates for children who attended ECEC for 1 h or more in the period whilst overall sample numbers include children who did not attend programs in particular years. Population estimates given by sampling weights. Results and discussion Findings In addition, about 2/3 of the children attend less than 20 h of ECEC on average in the years prior to school entry. Of those children attending some hours of ECEC in any given year, just under a quarter (23%) attended for fewer than 10 h of ECEC 3 and 4 years before school with this percentage reducing to just under one-fifth 2 years before school and fewer than one in ten children (7%) in the year before school. At the other extreme of participation hours, approximately one quarter of the children attended over 30 h per week of ECEC in the second, third and fourth years before school increas- ing to over a third (36%) in the year before school Attendance in one component of formal ECEC programs, kindergarten, is examined separately below in Table 4. Kindergarten has been a state-funded (rather than national) form of provision, and has been available to different degrees in Victoria and Queens- land, although this is changing in light of a national impetus to ensure all children access kindergarten programs in the year before school. At the time of collecting the first round of data in 2010, some 94% of children in Victoria attended 4-year-old kindergarten com- pared to 30% in Queensland—though these proportions are only partly reflected here because of the method of sampling children within ECEC programs. Only a minority of children attend 3-year-old kindergarten in Queensland and Victoria. Table 2  Hours of formal ECEC in each of the years before school overview Values in parenthesis are estimates for children who attended ECEC for 1 h or more in the period whilst overall sample numbers include children who did not attend programs in particular years. Population estimates given by sampling weights. Hours of formal ECEC per week Sample n Minimum Maximum Mean Std. Results and discussion Findings deviation Median 1 year before school entry 1,224 (1181) 0 (2) 50 25.09 (26.11) 14.60 (14.60) 21.00 (24.00) 2 years before school entry 1,373 (1119) 0 (2) 50 17.74 (22.80) 15.11 (13.35) 16.00 (20.00) 3 years before school entry 1,484 (883) 0 (2) 50 13.17 (21.89) 14.55 (12.69) 8.00 (19.00) 4 years before school entry 1,480 (673) 0 (1) 50 10.10 (21.77) 13.93 (12.82) 0.00 (18.00) Average in the years prior to school 1,109 (525) 0 (6) 50 17.61 (26.48) 12.29 (10.59) 15.00 (25.53) Table 2  Hours of formal ECEC in each of the years before school overview Page 9 of 15 Gilley et al. ICEP (2015) 9:9 Table 3  Hours of formal ECEC in each of the years before school by different categories of attendance Population estimates given by sampling weights. a  Whilst these children were enrolled in an ECEC program at point of entry to the study, this included Occasional Care. Main caregivers were asked to identify typical patterns of ECEC attendance used in most weeks of the year only. Some will not have regularly used ECEC programs following recruitment to the study. This number may also include cases of parental error in completing the survey. Hours of formal ECEC per week Sample n % 0 h % 0 < x ≤ 10 h % 10 < x ≤ 20 h % 20 < x ≤ 30 h % >30 h 1 year before school entry 1,224 (1181) 4 (0) 6 (7) 39 (40) 17 (17) 34 (36) 2 years before school entry 1,373 (1119) 22 (0) 15 (19) 25 (32) 18 (23) 20 (26) 3 years before school entry 1,484 (883) 40 (0) 14 (23) 19 (31) 13 (22) 14 (24) 4 years before school entry 1,480 (673) 54 (0) 10 (23) 15 (33) 10 (21) 11 (23) Average number of hours across the 4 years prior to school entry 1,109 (525) 3a (0) 32 (4) 27 (26) 19 (32) 19 (37) Table 3  Hours of formal ECEC in each of the years before school by different categories of attendance Table 4  Hours of Kindergarten attendance in the last 2 years before school a  Population estimates given by sampling weights. Hours per week of kindergarten attendance N attending kindergarten Minimum Maximum Meana Std. deviationa Mediana Per cent not attending kindergartena (%) 1 year before school entry 906 2 15 12.94 2.74 14 38 2 years before school entry 491 2 15 9.72 4.8 11 74 Average of 1 and 2 years before school entry 398 2 15 11.38 3.2 12 37 a  Population estimates given by sampling weights. As would be expected from known trends in kindergarten provision in Victoria and Queensland, attendance is much less common 2 years before school than in the year before school and weekly hours of attendance are also lower for 2 years before school. Given that providers of 4-year-old kindergarten for the extended hours of 15 h per week may not have received additional funding until 2013, many of the services from which data were collected in 2010 and 2011 had yet to extend their hours—although some did so in expectation of the change. Table 5 provides findings of a linear regression analysis of the extent to which selected child, family and community factors predict the total hours of ECEC attendance in the years before school, which includes both child care and kindergarten program attend- ance. The factors tested here align with the range of factors identified by Duncan. The unstandardized coefficients can be interpreted as the change, measured in hours, given a one-unit change in the predictor while all other predictors are held constant. The factors that predict more hours of ECEC participation include, in order of the strength of their association, higher family income, having two parents in paid work, fewer children in a family, lower scores on the HLE, being in receipt of a Health Care Card and having an easier child temperament. The factors that are on the cusp of being significant predictors of longer hours include not having a child disability and having a Page 10 of 15 Gilley et al. ICEP (2015) 9:9 Table 5  Results of  the hierarchical regression analyses for  the prediction of  total hours of attendance of formal ECEC (explained variance: R2 = 0.14) * p < 0.05; ** p < 0.01; *** p < 0.001; (1) indicates that the variable has a value of 1 or 0, for example, the family is either renting or is not. Table 4  Hours of Kindergarten attendance in the last 2 years before school Variable Unstandardised regression coefficient SE T value Child age 0.091 0.179 0.508 Sex (0 = male; 1 = female) −1.024 1.935 −0.529 Disability (1) −8.852 5.077 −1.743 Intelligence (BIA) −0.273 0.106 −2.565* Temperament 3.742 1.565 2.391* Low birth weight (1) 3.478 3.842 0.905 both parents working (0) vs. rest (1) −21.551 2.048 −10.523*** Both parents not working (1) vs. rest (0) 11.163 8.925 1.251 Single parent (1) −1.083 10.280 −0.105 Income 1.767 0.438 4.031*** Education 1.251 0.734 1.704 Health Care Card (1) 6.039 2.984 2.024* Renting (1) 3.222 2.489 1.294 Language other than English (1) 7.054 5.093 1.385 Home Learning Environment −0.294 0.078 −3.774*** Number of children −7.009 1.094 −6.407*** Stressful life events (1) 4.615 4.035 1.144 Parental mental health issues (1) −0.270 0.233 −1.158 SEIFA 0.848 0.794 1.069 Table 5  Results of  the hierarchical regression analyses for  the prediction of  total hours of attendance of formal ECEC (explained variance: R2 = 0.14) higher level of parental education. Having regard to the cost of participation it is likely that the children of families with Health Care Cards (entitling families to a range of free services for their children) attend longer hours than the children in families with lower incomes; child care is cheaper for families with Health Care Cards, and 4-year-old kin- dergarten programs in Victoria are effectively free for all. f Table 6 presents the predictors of total hours of attendance in kindergarten, applying the same analysis used for predicting ECEC attendance, including attendance at both 3- and 4-year-old kindergarten only. Family income and both parents working were also predictors of total hours of kin- dergarten programs attended. In comparison to total hours of attendance of all for- mal ECEC settings, total hours of kinder program attendance was predicted by higher HLE ratings. Factors that were no longer predictive were higher numbers of children in a family and easier temperament. In contrast, there are additional predictors of using longer hours of kindergarten; namely, higher Socio-Economic Indexes for Areas (SEIFA), higher educational levels of parents and not renting the family home. Other non-predic- tors remain the same for both ECEC program usage and kindergarten program usage. Overall this model of analysis explains some 14% of the variance. Finally, a multinomial regression analysis was used to predict ECEC usage before school entry. Table 4  Hours of Kindergarten attendance in the last 2 years before school Here, 1 year of ECEC program attendance was introduced as a reference, and the background variables were then compared for groups of children with 2, 3, or 4  years of ECEC program experience. No significant predictors for attending 2  years of ECEC in comparison to 1 year were found (p > 0.05). However, families with fewer Page 11 of 15 Gilley et al. ICEP (2015) 9:9 Table 6  Results of  the hierarchical regression analyses for  the prediction of  total hours of attendance of Kinder programs (explained variance: R2 = 0.14) * p < 0.05; ** p < 0.01; *** p < 0.001, (1) indicates that the variable has a value of 1 or 0, for example, the family is either renting or is not. Variable Unstandardised regression coefficient SE T value Child age −0.018 0.047 −0.374 Sex (0 = male; 1 = female) −0.680 0.488 −1.393 Disability (1) 1.917 1.413 1.356 Intelligence −0.015 0.028 −0.517 Temperament 0.334 0.516 0.647 Low birth weight (1) 0.350 1.024 0.341 both parents working (0) vs. rest (1) 1.228 0.601 2.043* Both parents not working (1) vs. rest (0) 4.147 2.883 1.438 Single parent (1) −3.574 3.097 −1.154 Income 0.534 0.125 4.266*** Education 0.738 0.212 3.487** Health Care Card (1) 0.816 0.700 1.164 Renting (1) −1.905 0.745 −2.557* Language other than English (1) −0.948 1.263 −0.751 Home Learning Environment 0.072 0.021 3.455** Number of children −0.020 0.333 −0.059 Stressful life events (1) 0.074 1.027 0.072 Parental mental health issues (1) −0.095 0.076 −1.249 SEIFA 1.092 0.231 4.733*** Table 6  Results of  the hierarchical regression analyses for  the prediction of  total hours of attendance of Kinder programs (explained variance: R2 = 0.14) children tended to send their children earlier to formal ECEC settings (p < 0.05 for both 1 vs. 3 and 1 vs. 4 years of ECEC). In addition, having parents with a higher education, families with two working parents and families providing a less favourable HLE lead to earlier attendance (1 vs. 4 years of ECEC attendance, p < 0.05). Discussion In brief the enrolment of children in ECEC program hours was predicted by parental employment, favouring higher income earners and access to cheaper fees favouring a specific category of families on low income. That lower HLE was also a predictive factor of earlier entry to ECEC programs, presents an opportunity to make a difference to the developmental progression of at least some of the more vul- nerable population of children, since the HLE has been proven to be a good predictor of children’s outcomes (Niklas 2015). This Australian snapshot of overall ECEC attendance shifts markedly when examining kindergarten program attendance by itself. The predictors of higher hours of kindergar- ten program attendance was strongly associated with family advantage factors including both parents working, higher SEIFA (SES), higher HLE and parents not renting the family home. In brief, the children from more advantaged households were more likely to receive the benefit of kinder programs before school. This usage of kindergarten includes par- ticipation in both 3-year-old and 4-year-old programs and runs counter to the prevailing research evidence and policy logic of ensuring that more disadvantaged children receive access to early learning programs, preferably high-quality programs in the years before school. These findings underscore the importance of contemporary Council of Australian Governments efforts toward the provision of universal access to 4-year-old kindergarten programs for Australian children—an approach that was beginning to gain momentum when the first round of E4Kids data was collected in 2010. Under this policy initiative, in the context of what is a non-compulsory system of provision, particular care needs to be taken to ensure that a sub-group—the most vulnerable children—do not miss out. Three- year-old kindergarten programs (typically 2 years before school entry) largely remain the preserve of more advantaged families as fees do not usually attract a public subsidy. In terms of the age of entry to ECEC programs, there were no child or family pre- dictors of using 1 year versus 2 years of ECEC program before school. However, one family advantage factor—higher parental education—predicted the earlier entry of chil- dren into ECEC programs 3 and 4 years before school. Further, one family disadvantage factor—low HLE—alongside having both parents in the paid workforce also predicted earlier ECEC program usage. Discussion A common ECEC policy challenge is ensuring that young children have access to, and attend, the ECEC programs that are available in a community. Further, there is an aspi- ration that starting children early enough, and for long enough to make a positive (and not negative) difference to their learning and life trajectories, yet in essence ECEC pro- grams are generally not compulsory and parents decide on the timing and amount of their children’s attendance. This paper reviewed data from the E4Kids study on the extent to which the patterns of attendance in ECEC programs in Australia are likely to be optimal for children’s learning and development in light of parameters of optimum attendance that are reported in the research literature. This analysis is based on a weighted sample of chil- dren enrolled in ECEC at age 3–4 years in two States. The findings in relation to the three research questions are discussed below. They address the implications of attendance pat- terns alone, though it is acknowledged that the potential of particular attendance patterns translating into improved outcomes, or moderating adverse behavioural effects depend on the level of quality of the programs, and this is the substance of further research.h The analysis of attendance patterns of young children within a large-scale longitudinal study—E4Kids –indicated that Australian children’s attendance in ECEC programs fol- lowed an expected pattern in each of the years before school: it is less common for very Gilley et al. ICEP (2015) 9:9 Page 12 of 15 young children to attend ECEC settings, and increasing likely that children take part in ECEC programs as they approach school age. Similarly, the average weekly hours spent within ECEC settings increase as children get closer to their first school year. These data suggest that even among those children attending ECEC programs at age 3–4 years there remains a significant group of children who either do not attend ECEC programs in the formative first 3 years of life or who attend at a level (under 10 h per week) which is unlikely to lead to significant developmental benefit. ii In terms of the predictors of taking part in ECEC programs, the overall usage of pro- grams was predicted by family advantage factors (principally high income) and family disadvantage factors (principally having a Health Care Card and lower Home learning Environment (HLE) scores). Discussion Parental participation in the paid workforce is typically aligned with family advantage, since paid employment is an antidote to poverty, yet some parents may feel driven to employment for financial reasons when they would pre- fer to be at home personally supporting the development of their children. There are a number of messages for public policy in these data. Clearly for countries that provide universal (albeit non-compulsory) ECEC programs for children in the early Page 13 of 15 Gilley et al. ICEP (2015) 9:9 years of life, issues related to ECEC program access and dosage may be small. In con- trast, these issues are major in countries such as Australia where universal provision is a quest at the level of 1 year before school, and not a consideration prior to that year. In Australia program usage is dependent on the ability of families to purchase programs, and the views of parents regarding the relevance and quality of programs for their chil- dren. Policy implications that arise in light of our analyses of the E4Kids sample include that children who access ECEC programs before school typically reside in families hav- ing particular characteristics, including higher parental education, full engagement in the paid workforce and, for some, having a poor home learning environment—that in turn has a relationship with low income that ensures fee relief (and therefore greater likelihood of accessing ECEC programs. If different constituent groups are the target of ECEC provision specific solutions are needed to engage such groups. To address dif- ferential access and usage of ECEC programs by Australian children a shift to universal provision for children less than 4 years of age would represent a major change, and is not currently on the short or even medium term political horizon. To the extent that vulnerable children are already enrolled in ECEC programs in Australia an immediate focus can be on their identification and the assurance of continued access, attendance and a quality of program that can make a difference to children’s cognitive and social outcomes. Targeted model programs will continue to have a place for highly vulnerable children, including within universal provision systems, given the higher magnitude of positive change that research has demonstrated is likely for such programs. Author details 1 1 Victorian Department of Education, 2 Treasury Place, East Melbourne 3002, Australia. 2 Melbourne Graduate School of Education, The University of Melbourne, Level 4, 100 Leicester St, Carlton 3053, Australia. Authors’ contribution TG conceptualised the research focus on this paper and was lead author for all sections of the paper. CT provided sig- nificant suggestions and direct input into the background and discussion sections of the paper. FN and DC were jointly responsible for formulating the data analysis approach, the data analysis and data presentation in table form. All authors read and approved the final manuscript. Abbreviations ECEC E l hild Abbreviations ECEC: Early childhood education and care; HLE: Home learning environment; LSAC: Longitudinal study of Australian children; SES: Socio-economic status; SEIFA: Socio-economic indexes of areas. Conclusion Governments are increasingly looking to additional opportunities within the ECEC system to promote children’s wellbeing and cognitive development. Problems of access and the challenge of providing of a sufficient dosage of program, especially to vulnerable children, underscores the level of challenge for public policy in Australia if the provision of ECEC programs is to achieve the specified policy intention to improve children’s learning and development outcomes. References Anderson, L., Shinn, C., Fullilove, M., Scrimshaw, S., Jonathan, E., Fielding, J., et al. (2003). The effectiveness of early child- hood development programs: a systematic review. American Journal of Preventive Medicine, 24(3), 32–46.i Anderson, L., Shinn, C., Fullilove, M., Scrimshaw, S., Jonathan, E., Fielding, J., et al. (2003). The effectiveness of early child- hood development programs: a systematic review. American Journal of Preventive Medicine, 24(3), 32–46. Bauchmillar, R., Gortz, M., & Rasmussen, A. (2011). Long-run benefits from universal high-quality pre-schooling. Copenhagen: AKF Danish Institute of Government Research. Baxter, J., & Hand, K. (2013). Access to early childhood education in Australia. Research Report 24. Melbourne: Australian Institute of Family Studies (AIFS). Biddle, N. (2011). An exploratory analysis of the Longitudinal Survey of Indigenous Children. Working paper no. 77. Canberra: Centre for Aboriginal Economic Policy and Research Biddle, N. (2011). An exploratory analysis of the Longitudinal Survey of Indigenous Children. Working paper no. 77. Canberra: Centre for Aboriginal Economic Policy and Research. , ( ) p y y g y g g p p Centre for Aboriginal Economic Policy and Research. Centre for Aboriginal Economic Policy and Research. Burchinal, M., Roberts, J. E., Zeisel, S. A., Hennon, E. A., & Hooper, S. (2006). Social risk and protective child, parenting, and child care factors in early elementary school years. Parenting-Science and Practice, 6(1), 79–113. Burchinal, M., Vandergrift, N., Pianta, R., & Mashburn, A. (2010). Threshold analysis of association between child care qual- Burchinal, M., Vandergrift, N., Pianta, R., & Mashburn, A. (2010). Threshold analysis of association between child care qual- ity and child outcomes for low-income children in pre-kindergarten programs. Early Childhood Research Quarterly, 25(2), 166–176. ity and child outcomes for low-income children in pre-kindergarten programs. Early Childhood Research Quarterly, 25(2), 166–176. Burchinal, M., Vernon-Feagans, L., Vitiello, V., & Greenberg, M. (2014). Thresholds in the association between child care quality and child outcomes in rural preschool children. Early Childhood Research Quarterly, 29, 41–51. Burger, K. (2010). How does early childhood care and education affect cognitive development? An international review of early interventions for children from different social backgrounds. Early Childhood Research Quarterly, 25, 140–165. Campbell, F., Pungello, P., Burchinal, M., Kainz, K., Pan, Y., Wasik, B., et al. (2012). Adult outcomes as a function of early child- hood educational programs: an Abecedarian project follow-up. Developmental Psychology, 48(4), 1033–1043. Caniato, N., Alvarenga, M., Stich, M., Jansen, H., & Baube, B. (2010). Received: 23 March 2015 Accepted: 9 June 2015 Received: 23 March 2015 Accepted: 9 June 2015 Acknowledgements E4Kids is a project of the Melbourne Graduate School of Education and is conducted in partnership with Queens- land University of Technology. E4Kids is funded by the Australian Research Councils Linkage Projects Scheme (Grant LP0990200), the Victorian Department of Education and Training and the Queensland Department of Education, Training and Employment. E4kids is conducted with academic collaboration with the University of Toronto, Scarborough, the Institute of Education at the University of London and the Royal Children’s Hospital, Melbourne. E4Kids thanks the Australian Government Department of Education and Training. This work was also supported by a fellowship within the Postdoctoral Programme of the German Academic Exchange Services (DAAD). Page 14 of 15 Gilley et al. ICEP (2015) 9:9 References Kindergarten attendance may reduce developmental impairments in children: results from the Bavarian Pre-School Morbidity Survey. Scandinavian Journal of Public Health, 38, 580–586. Cleveland, G., & Forer, B. (2010). Child care use and child development in immigrant, lone mother, rural and official language minority families in Canada. Quebec: Policy Research Directorate Human Resources and Skills Development Canada. y y Coley, R. L., Lombardi, C. M., & Sims, J. (2015). Long-term implications of early ed children. Journal of Educational Psychology, 107(1), 284–299. Coley, R. L., Lombardi, C. M., & Sims, J. (2015). Long-term implicatio Coley, R. L., Lombardi, C. M., & Sims, J. (2015). Long-term implications of early education and care programs for Australian children. Journal of Educational Psychology, 107(1), 284–299. children. Journal of Educational Psychology, 107(1), 284–299 y gy Commission, Productivity. (2014). Child care and early childhood learning draft report. Canberra: Common wealth of Australia. Duncan, G., & Early Child Care Research Network, N. I. C. H. D. (2003). Modelling the impacts of child quality on children’s preschool cognitive development. Child Development, 74, 1454–1475. Duncan, G. J., & Gibson-Davis, C. M. (2006). Connecting child care quality to child outcomes: drawi non-experimental data. Evaluation Review, 30(5), 611–630. doi:10.1177/0193841X06291530.f Gormley, W., Phillips, D., & Dawson, B. (2005). The effects of universal pre-k on cognitive development. Developmental Psychology, 41, 872–884. Heckman, J., & Masterov, D. (2006). The productivity argument for investing in young children. Minnesota: Cenre for Early Education and Development. Howes, C., Burchinal, M., Pianta, R., Bryant, D., Early, D., Cliford, R., et al. (2008). Ready to learn? Children’s pre-academic achievement in pre-kindergarten programs. Early Childhood Research Quarterly, 23, 27–50.f Jensen, B. (2013). VIDA: Knowledge-based efforts for socially disadvantaged children in day care. Tuborgve: VIDA project, Aarhus University. Leseman, P. (2002). Early childhood education and care for children from low-income or minority backgrounds. Oslo: OECD. Li, Y., Ying, L., & Huntsinger, C. (2014). Does preschool education predict children’s academic and behavioural outcomes in Leseman, P. (2002). Early childhood education and care for children from low-income or minority backgrounds. Oslo: OECD. China? Early Childhood Development and Care,. doi:10.1080/0300443 Loeb, S., Bridges, M., Bassok, D., Fuller, B., & Rumberger, R. (2007). How much is too much? The influence of preschool centres on children’s social and cognitive development. Economics of Educational Review, 26, 52–66.f Loeb, S., Bridges, M., Bassok, D., Fuller, B., & Rumberger, R. (2007). How much is too much? Zaslow, M., Anderson, R., Redd, Z., Wesel, J., Tarullo, L. & Burchinal, M. (2010). Quality, dosage, thresholds and features in early childhood settings: A review of the literature. OPRE 2011-5. Washington, DC: Office of Planning. Research and Evalua- tion, Administration for Children and Families, U.S > Department of Human Services. Warren, D., & Haisken-DeNew, J. (2013). Early bird catches the worm: The causal impact of pre-school participation and teacher qualifications on Year 3 National NAPLAN Cognitive Tests. Melbourne: Melbourne Institute of Applied Eco- nomic and Social Research (MIAESR). References The influence of preschool h ld ’ l d d l f d l R Loeb, S., Fuller, B., Kagan, S. L., & Carrol, B. (2004). Child care in poor communities: early learning effects of type, quality, and stability. Child Development, 75, 47–65. Magnuson, K., Ruhm, C., & Waldfogel, J. (2004). Inequality in preschool education and school readiness. American Educa- tional Research Journal, 41, 115–157. McCartney, K., Burchinal, M., Clarke-Stewart, A., Bub, K., Owen, M., & Belsky, J. (2010). Testing a series of causal propositions relating time in child care to children’s externalising behaviour. Developmental Psychology, 46(1), 1–17. Miles, M., & Huberman, A. (1994). Qualitative data analysis: an expanded source book. London: Sage. y p g Moss, P. (2012). Access to and use of early childhood education and care services: an International Overview. In: J. Baxter, & K Hand (Ed ), Access to early childhood education in Australia Research Report 24, 2013 Appendix A (pp A1–A14) y p g Moss, P. (2012). Access to and use of early childhood education and care services: an International Overview. In: J. Baxter, & K. Hand (Ed.), Access to early childhood education in Australia. Research Report 24, 2013. Appendix A (pp. A1–A14). Melbourne: Australian Institute of Family Studies (AIFS). y Niklas, F. (2015). Die familiäre Lernumwelt und ihre Bedeutung für die kindliche Kompetenzentwicklung [The learning environment provided by the family and its impact on the development of child competencies]. Psychologie in Erziehung und Unterricht, 62, 106–120. doi:10.2378/peu2015.art11d. Page 15 of 15 Gilley et al. ICEP (2015) 9:9 NSCDC (National Scientific Council on the Developing Child) 2008. The timing and quality of early experiences combine to shape brain architecture. Working Paper 5. Cambridge: NSDC, Harvard University. Pilarz, A., & Hill, H. (2014). Unstable multiple care arrangements and young children’s behaviour. Early Childhood Research Quarterly, 29(4), 471–483. Siraj-Blatchford, I., Mayo, A., Melhuish, E., Taggart, B., Sammons, P., & Sylva, K. (2010). Performing mental trajectories of children in the EPPSE 3-16 study. London: Department of Education. Spiess, C., Buchel, F., & Wagner, G. (2003). Children’s school placement in Germany: does Kidergarten attendance matter? Early Childhood Research Quarterly, 18, 255–270. Sylva, K., Melhuish, E., Sammons, P., Siraj-Blatchford, I., & Taggart, B. (2004). The Effective Provision of Pre-School Education Project: Findings from the early primary years. London: Institute of Education. Sylva, K., Melhuish, E., Sammons, P., Siraj-Blatchford, I., & Taggart, B. (2004). References The Effe Project: Findings from the early primary years. London: Institute of Education. Tayler, C., Ishimine, K., Cloney, D., Cleveland, G., & Thorpe, K. (2013). The quality of services in Australia. Australasian Journal of Early Childhood, 38(2), 13–21.f Tayler, C., Ishimine, K., Cloney, D., Cleveland, G., & Thorpe, K. (2013). The quality of early childhood education services in Australia. Australasian Journal of Early Childhood, 38(2), 13–21. Vandell, L., Belsky, J., Burchinal, M., Steinberg, L., & Vandergrift, N. (2010). ‘Do effects of early childhood care extend to age 15 years? Research from the NICHD study of early child care and youth development. Child Development, 81(5), 737–756. Warren, D., & Haisken-DeNew, J. (2013). Early bird catches the worm: The causal impact of pre-school participation and teacher qualifications on Year 3 National NAPLAN Cognitive Tests. Melbourne: Melbourne Institute of Applied Eco- nomic and Social Research (MIAESR). Zaslow, M., Anderson, R., Redd, Z., Wesel, J., Tarullo, L. & Burchinal, M. (2010). Quality, dosage, thresholds and features in early childhood settings: A review of the literature. OPRE 2011-5. Washington, DC: Office of Planning. Research and Evalua- tion, Administration for Children and Families, U.S > Department of Human Services.
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E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 Psychological Microclimate of Student Groups, Studying in Different Instructional Formats Liudmila Dikaya1,*, Olesya Shipitko1, and Eugene Borokhovski2 1Southern Federal University, B. Sadovay str., 105/42, 344006 Rostov-on-Don, Russia 2Centre for the Study of Learning and Performance (CSLP), Concordia University, De Maisonneuve Blvd. West, 1455 Montreal, H3G 1M8 Canada Abstract. The article discusses psychological microclimate of a student group under different instructional formats (teaching and learning face-to- face, online, or blended). The main objective of the study was to explore factors that contribute the microclimate formation in connection with the changes that the formal postsecondary education undergoes because of the COVID-19 pandemic. One hundred and sixty-six students of several higher education institutions in Rostov-on-Don, Russia took part in the study. To fulfill the study objective, data about various individual characteristics of participating students and their subjective rating of the psychological microclimate in the respective student groups were collected by means of psychological testing and subjected first to the ANOVA and then to the multiple regression analyses. ANOVA revealed no statistically significant differences across instructional formats either in the microclimate scores or in the respondents’ psychological characteristics. The follow-up multiple regression analysis explored models of joint contribution of the predictor variables to the formation of the microclimate in student groups. Specifically, it found that the relationship between the microclimate and emotional tone is negative, whereas generosity and leadership inclinations are positive predictors of the psychological microclimate in student groups. Better understanding what factors determine dynamic interactions among students in various instructional formats could be instrumental in optimizing microclimate in students group, undoubtedly affected by rather dramatic changes in all aspects of our social lives, caused by the current epidemiological situation in the world. Psychological microclimate in a group is, in turn, capable of seriously impacting on students’ learning performance and psychological wellbeing. * Corresponding author: dikaya@sfedu.ru 1 Introduction Since the outbreak of the COVID-19 virus in March 2020, the vast majority of universities in the world has been forced to enter in an experiment unprecedented in history – the closure of campuses and the transfer of the learning process to a distance learning (online) format. Most Russian universities were not an exception – urgently switching to © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). * Corresponding author: dikaya@sfedu.ru © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 learning at distance, as well. Six months after the onset of the pandemic, the organization of the educational process in universities has undergone significant changes. By September 2020, some empirical data from sociological and psychological studies of teachers’ and students’ attitudes to online learning have been accumulated. Their results indicate notable differences in attitudes of major stakeholders in the educational process, depending on the region, composition of the student population, their leading motivation, socio-economic status, psychological and communicative characteristics, etc. [1-7]. Together with the undeniable risks, new opportunities have emerged, as well. Assessing positive and negative aspects of organizing educational process in a distance format, students of higher education institutions in Russian Federation named, as its main “advantages” the convenience of working from home and the opportunity not to commute to and from the venue of study. Among "minuses", there is the lack of interpersonal and social contacts, which represent an important and significant component not only of the learning process, but also of a person's life. This type of deprivation social interactions cannot be ignored, as it is nearly impossible replace them with the surrogate interpersonal communications via online channels [8]. Education in various universities in Russia in the academic year 2020-2021 was not uniformly online, various educational formats – face-to-face, distance and blended – coexisted, creating yet another new “field experiment”, the consequences of which are not easy to predict. Furthermore, with the pandemic being a persisting reality, the nearest developments of and long-term projections about the formal educational system are unclear. Despite vigorous scientific debate about the effectiveness of educational policy responses to the pandemic-induced challenges, not enough is known about the experiences of effectively applying innovative learning models in new formats. Thus, the problem of finding optimal solutions for organizing students’ training in higher education institutions is highly relevant. Analysis of the recent scientific works of Russian and foreign authors has made it possible to identify and highlight the risks and difficulties, associated with distance education, on one hand, and its advantages, on the other. * Corresponding author: dikaya@sfedu.ru Deprivation of contacts with fellow students and teachers entails subjective perception of the lack of real support and mutual assistance, increases feelings of loneliness, disappointment, and elevated anxiety. Insufficient emotional contacts among students can also create additional problems in the learning itself and preclude students from successfully assimilating study materials. As such, one of the paramount tasks for educators in transition to online learning is to increase opportunities for and support of all types of learners’ interactions – student-student, student-teacher, and student-content alike [13, 24, 25]. Changes in interactions in new learning formats inevitably lead to alterations in psychological climate, defined as “... the qualitative aspect of interpersonal relations, which manifests itself in the form of a set of psychological conditions that facilitate or impede productive joint activities and all-round development of the individual in a group” [26, p. 329]. The conditions, in which interpersonal interactions in a students group unfold, as well as their structure and dynamics, affect learners’ satisfaction with the educational process, which, in turn, influences the internal motivation of students to learn and, ultimately, the results of learning. Therefore, the problem of forming a favorable psychological microclimate in student groups is becoming relevant in modern education, especially in the current situation. Psychological microclimate is formed from the very first day a student group is established at the beginning of the first academic year and its members make their first contact. Group microclimate dynamics are quite well described in Russian psychological literature [27]. At the same time, the initial period of joint learning is known to be the most difficult and potentially the most consequential. Students are still poorly oriented in the conditions of the university life and study, they do not know how to interact with each other, or how to coordinate their efforts when performing educational tasks, which could lead to higher energy cost, fatigue, and frustration [28]. The formation of psychological microclimate is influenced by students’ individual characteristics and by the nature of their interpersonal relationships. Each individual experiences a favorable microclimate in the group as a state of personal satisfaction with the relationships with fellow students, teachers, the educational process, and learning outcomes. As a result, the mood of a person increases, as does person’s motivation for learning, giving a boost to further development of skills and competencies. * Corresponding author: dikaya@sfedu.ru The most obvious difficulties for students in their transition to distance learning include: psychological (loss of cognitive skills, decreased learning motivation and self-discipline); socio-psychological (lack of direct contact of students with each other and with the teacher, which can slow down the acquisition of new information); social (increasing social isolation, alienation from fellow students and from teachers, cyberbullying and cybertrolling); operational (difficulties in understanding and assimilating study material); health risks for students (visual impairment, development of hypodynamia, depressive conditions, increase in suicidal tendencies and drug abuse); existential and ethical difficulties (virtualization of life, development of digital addictions) and so on [9-13]. ) The clear advantages of distance education for students include: freedom in choosing the time and place of training, the ability to repeatedly refer to the recording of the lesson; flexible access to training materials and assignments; possible increase in the amount of the studied material, as in comparison with ordinary lessons its presentation may be more illustrative and animated; opportunities to access online lectures of leading teachers and researchers [14-16]. Psychologists also point out to the effectiveness of intellectual and creative research activities in online interactions, shown by participating students [17]. The role of Internet- mediated group activities in decision-making, creation of new original ideas and their practical implementation in research is also noted [18]. A multitude of the existing software solutions provide teachers and students with an opportunity to interact in small and large groups united virtually on the Internet to work for a common goal [19]. Overall, the possibility to transfer these constructive experiences of joint activities, aimed at obtaining 2 2 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 an intellectual product during online communication among participants of the educational process, looks promising. an intellectual product during online communication among participants of the educational process, looks promising. At the same time, the inability to establish and maintain direct interpersonal psychological contacts either among students of between students and their teachers (including those contacts that heavily rely on non-verbal means of communication) in online instructional formats can cause serious difficulties for all participants of the educational process. The lack of eye contact, physical interactions, facial expressions and gestures, etc. can lead to a decrease in students’ interest and motivation for learning and, as a result, impede the effectiveness of education [20-23]. * Corresponding author: dikaya@sfedu.ru 3) What psychological characteristics of learners predict the psychological microclimate in student groups? 3) What psychological characteristics of learners predict the psychological microclimate in student groups? * Corresponding author: dikaya@sfedu.ru Therefore, a favorable psychological climate is a condition for the overall increasing interest in and ultimate success of learning. In contrast, an unfavorable climate is experienced by students as dissatisfaction with the group relationships and with learning, in general (including even simple session attendance), i.e., both its context and result. Sketchy, these are the ways, in which the psychological climate of the student group influences academic performance of learners [29, 31]. In the modern research literature, we see information on the role of various factors that contribute to the formation of the psychological climate in student groups, including characteristics of the macro- and microenvironment, personal qualities of individual group members, instructor’s teaching style, etc. [28 – 31]. It is quite plausible to assume that the pandemic-caused dramatic changes in educational environments in the universities should also impact on the process of the microclimate formation in student groups. 3 3 E3S Web of Conferences 258, 07076 (2021) UESF-2021 https://doi.org/10.1051/e3sconf/202125807076 To summarize all of the above, we can state the following. Current conditions in our society, in general, and in formal education, in particular is seriously affected by the pandemic in a variety of ways. Of the multitude of factors that can determine either success of failure of students’ training in institutions of higher education, the psychological climate plays a particularly important role. Therefore, the study of factors, capable of influencing psychological microclimate formation in student groups under the pandemic and in the post-Covid future, seems more than relevant. Whereas, the research literature provides us with some useful insights regarding factors of the microclimate formation in student groups in regular (face-to-face) instructional formats, much lesser is known about the same processes in distance or blended education. Meanwhile, such data could substantially contribute to finding ways of optimizing teaching and learning in higher education institutions. The main objective of the present study was to determine how the changing conditions in university education, caused by the COVID-19 pandemic, influence the formation of psychological microclimate in a student group. To successfully meet this objective it was necessary to address the following sequential research questions: 1) Are there differences in psychological characteristics of students across different instructional formats in changing educational conditions? 2) Does instructional format influence the psychological microclimate of the student groups in university? 2) Does instructional format influence the psychological microclimate of the student groups in university? 2.1 Procedure and Participants This empirical study was carried out in October 2020, in the middle of the Fall academic semester at several universities in Rostov-on-Don, Russian Federation. Followed the rise of the second wave of COVID-19 contagions, a number of higher educational institutions have completely switched to a distance learning format, while in some, training continued in a face-to-face regular format or adopted some combination of the two. Thus, for the first time in recent history of education, student group formation and interpersonal dynamics within student groups were the subject of serious change on such a massive scale, including bringing together students who never before experienced direct interpersonal contacts with one another. Overall, 166 students (119 females and 47 males), ranging in age from 17 to 48 (with the average of 21.5), took part in the study. They represented social, humanitarian and technical subject matters and specialties of participating higher educational institutions. The division of the study participants into groups was based on the criterion of the degree of possibility to enable and maintain direct interpersonal contacts among students in the study group. According to requirements and affordances of a particular university/department that took into account, primarily, the discipline and the years of study, participants were divided into four distinctive groups, at least three of which were facing atypical learning format while students in the fourth group, though set-up to study face-to-face, were well aware of the ongoing changes in the learning environments all around them: 1) first-year students, whose training by the time of this study had been carried out in all disciplines in a distance format. These students were not previously experienced face-to- face learning, supposedly did not have interpersonal contacts outside class time and 4 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 continued studying in their formal groups online (n1 = 36). Lectures and practice sessions for them were conducted by means of the MS Teams platform; continued studying in their formal groups online (n1 = 36). Lectures and practice sessions for them were conducted by means of the MS Teams platform; 2) first-year students whose training at the time of this study had been carried out in a mixed format, i.e., lectures were conducted on the MS Teams platform, while practical classes were held in-person (n2 = 49). 2.1 Procedure and Participants All students in this group were directly acquainted with their classmates and saw each other in practical classes two or three days a week, where they had opportunities for interpersonal communications; y pp p 3) fourth-year students who, prior to the pandemic onset, i.e., until March 2020, had studied in person full-time, but since then have switched to studying in a distance format using the MS Teams platform (n3 = 11). During the previous academic years, these students developed interpersonal relationships in their respective groups, but during this research project, they could maintain those relationships only indirectly, in the online format; p j y p y y 4) students of I-IV year of study, whose learning full-time in-person format continued uninterrupted by the pandemic. These students, therefore, regularly engaged into direct interpersonal contacts with each other, though obviously knew about the massive change in instructional delivery modes anywhere in higher education (n4 = 70). 2.2 Measures Our study employed the following psycho-diagnostic instruments offered to the respondents vial Google online forms:  “Assessment of mental activation and emotional tonus”, designed to assess respondents’ psychological states. The technique is a modified stimulus material for the SAM technique (Subjective feeling of well-being, Activity, Mood) [32]. A participant is asked to rate twenty polar statements about mental states, as they apply to him/her, on a scale from 0 to 3. The test allows drawing a conclusion about the degree of experiencing the following mental state – mental activation, interest, emotional tonus, tension, and comfort. Each of these five dimensions can collect from 3 to 21 points to reflect the unique pattern of each participant’s current mental state.  Assessment of microclimate in a student group was carried out by means of the ASMG- test [33]. The respondents rated twenty characteristics of microclimate of their respective student groups on a scale from 0 to 3, resulting in a total score with a theoretical range from 0 to 60 points that reflects their overall opinion of how favourable the microclimate in their group is.  T. Leary's test of interpersonal relationships was employed to identify the prevalent type of the respondents’ attitude towards other people [34]. The questionnaire contains 128 value judgments, which describe eight types of relationships (16 items per type/scale). Judgment statement reflecting each type of relationships are grouped in clusters of four and repeated after an equal number of other clusters. The statements, with which the respondent agrees, are then summed-up to reflect the degree of manifestation of each type of the relationships. Thus, the theoretical range of each scale is in between 0 and 16 points. These are the types of attitudes towards others encompassed by the instrument: dominant, independent, aggressive, distrustful, submissive, dependent, cooperative, and generous.  The test for assessing communicative and leadership organizational aptitudes is aimed at indirectly identifying these potential human abilities [35]. The questionnaire contains 40 questions, 20 of which address communicative inclinations, whereas the other 20 characterize organizational ones. The corresponding scores obtained using this technique can vary from 0 to I00 on each scale. 2.3 Statistical Analyses 5 5 E3S Web of Conferences 258, 07076 (2021) E3S Web of Conferences 258, 07076 (2021) UESF-2021 https://doi.org/10.1051/e3sconf/202125807076 Descriptive statistics for the collected data (means and standard deviations) reflect the magnitude and variability of students’ personal characteristics, the microclimate in their respective groups and communicative and organizational inclinations. Analysis of variance (ANOVA) was used to determine if the teaching format differentially affects the microclimate of student groups under new circumstances of the organization and implementation of the educational process. Finally, multiple regression analysis was performed to explore the joint contribution of particular personal characteristics of participants to the microclimate in student groups. Data processing was carried out using the SPSS 23.0 software package. 3 Results The literature also provides data on the influence of a specific instructional format on students’ learning [8, 13-23]. Therefore, we next addressed the question of the influence of an instructional format on the microclimate of student groups in higher education institutions. ANOVA (analysis of variance) was carried out to determine if the Instructional Format factor creates differences in psychological microclimate across participating student groups in the context of new challenges associated with the epidemiological situation in the Russian Federation and in the world. The results showed that there were no statistically significant differences among groups (F = 1.168 with p = .172) in scores of the microclimate evaluation. In other words, whatever changes the psychological microclimate goes through due to the current challenges faced by educational system, should be typical for all students regardless what instructional format they are studying in. g y y g Based on these data, we then performed multiple regression analysis in order to explore what factors contribute to the formation of psychological microclimate, as the criterion variable, for the entire sample. Its statistically significant results are presented in Table 2. Please, note that we initially tested several regression models with a number of other variables, such as comfort, tension and mental activation, i.e., with the predictors that potentially could most comprehensively reflect the emotional state and involvement of a person in educational and professional activities in changing educational formats. Table 2. Results of the multiple regression analysis of the connection between psychological microclimate (criterion variable) and selected psychological characteristics of the respondents (independent predictors) Table 2. Results of the multiple regression analysis of the connection between psychological microclimate (criterion variable) and selected psychological characteristics of the respondents (independent predictors) Model Parameters Psychological microclimate evaluation scores Model 1 Emotional tonus Model 2 Emotional tonus Leadership inclinations Model 3 Emotional tonus Leadership inclinations Generosity Standardized Β -.405** -.294** .244** -.267** .223** .188* Adjusted R2 0.157 0.199 0.227 Model F-ratio 24.723 16.754 13.403 SE 12.6 12.33 12.11 df (regression) 1 2 3 df (residual) 126 125 124 Note: 1. ** - р ≤ .01; 2. * - р ≤ .05. Exploration of the contribution of all potentially relevant independent variables to the assessment of the student group psychological microclimate, carried out by means of the step-wise multiple regression analysis (a step-by-step method was used), revealed the following results. 3 Results escriptive statistics of all variable assessed in this study are summarized in Table 1 belo Table 1. Descriptive statistics Variable Min Median Mean Max SD Age 17 19 21.5 48 7.37 Year of study 1 1 1.3 4 0.87 Mental activation 3 12 11.5 21 4.51 Interest 3 9 9.5 21 4.24 Emotional tonus 3 8 8.2 20 3.61 Tension 3 11 10.5 19 3.40 Comfort 3 10 9.9 19 3.30 Microclimate evaluation 1 32 32.2 54 13.6 Dominant 1 4 4.5 14 3.37 Independent 1 4 4.2 14 2.64 Aggressive 1 4 4.2 13 2.58 Distrustful 1 4 4.1 15 2.97 Obedient 1 4 4.4 12 2.60 Dependent 1 4 3.9 9 2.08 Cooperative 1 5 5.4 13 3.01 Generous 1 5 5.5 13 3.02 Communicative inclinations 1 60 56.2 100 29.9 Leadership inclinations 10 65 62.3 100 18.3 scriptive statistics of all variable assessed in this study are summarized in Table 1 below. Table 1. Descriptive statistics As it is evident from Table 1, emotional states of tension and mental activation are prevalent in all groups, whereas indicators of comfort and interest are less pronounced, and there is also a notable low level of emotional tonus. Analysis of indicators of interpersonal relationships in a group shows relatively high degree of generosity and cooperation, followed in magnitude by the traits of dominance and submissiveness (approximately equal to one another). Identical values are also observed for the indices of independence and aggressiveness, whereas characteristics of distrust and dependency are quite low. It could be surmised that participating students are open to new experience, strive to control the situation, while adapting to the changes in educational process caused by the pandemic. These characteristics appear to relevant potential contributors to the formation of the psychological microclimate in student groups. As we know from the research literature, psychological microclimate of a student group is important for educational motivation and, as a result, for the academic performance of 6 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 students in face-to-face education [28-31]. The literature also provides data on the influence of a specific instructional format on students’ learning [8, 13-23]. Therefore, we next addressed the question of the influence of an instructional format on the microclimate of student groups in higher education institutions. students in face-to-face education [28-31]. 4 Discussion The study found the emotional tonus of the respondents was relatively low, whereas the desire for interpersonal interactions, on contrary, was expressed strongly. Combined, this two patterns may be indicative of the respondents’ strive to establish closer interpersonal contacts within their respective student groups to counteract depressed emotional tonus. Students, also, may try to maintain more intensive communication with fellow students and with the teachers in order to stabilize and possibly increase mental activity. Please, note that a low emotional tonus itself makes a negative contribution to the group psychological microclimate. In the future it would make sense to pay closer attention to the specifics of the psychological microclimate formation not just across the changing instructional formats, but also within each one of them, while connecting microclimate particularities to student academic performance. Insights from these types of the future analyses may prove very useful for developing specific recommendations for educational practice in higher education institutions. If, as the findings suggest, we consider leadership inclinations a significant positive contributor to a favorable psychological microclimate in new learning environments, a number of points should be sounded out. For example, when planning instructional interventions, to elevate emotional state of students, educators may want consider more intensive use of group projects and other types of team activities, as well as encourage learners’ involvement with various student scientific associations. g As shown in many studies carried out before the pandemic, the most important factor in the formation of the psychological microclimate in a student group within the most typical face-to-face educational format, is the nature of interpersonal communications, their specific characteristics, such as depth, intensity, composition of parties involved, designed structured versus random contextual character, etc. Interpersonal communications substantially contribute to knowledge acquisition and group microclimate alike. In the absence of complete and accurate information, tension in relationships, misunderstanding and mistrust grow, conflicts escalate [36, 37]. Our results support these data. Among variables contributing to the student group psychological microclimate in the new educational environments, leadership inclinations and generosity emerged as significant positive predictors. They could be reasonably categorized as personality characteristics that, not surprisingly, manifest themselves, primarily in interpersonal communications. 4 Discussion At the same time, our results open up new horizons for the study of this topic, as nearly 75% of variability in the microclimate evaluation remains largely unexplained and as some of the newly introduced instructional formats persist and may expand their specific influence on students’ perception of their respective groups’ microclimate and, through it, on various aspects of educational experiences and learning outcomes. 3 Results Only three analyzed psychological characteristics, individually and in combination (final adjusted R2 = .23), significantly affect the microclimate in a student group. The final model (Table 2), with positive and negative statistically significant regression coefficients (p ≤ .01 and p ≤ .05), points out specifically to the following indicators of emotional state: emotional tonus, leadership inclinations and generosity. It is 7 7 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 understood by the authors that this particular combination of predictors composes group members’ desire for open interpersonal interaction and the achievement of common group goals. Supposedly, it is what is forming psychological microclimate in student groups under the current situation in education, when the dynamics of the interpersonal interactions cannot stay unaffected by the changes in instructional formats. The obtained models make it possible to refine the research hypothesis by reducing the number of investigated parameters and their interactions in determining what factors contribute to the microclimate of student groups. 6 Conclusion The proposed model of psychological microclimate in a student group makes it possible to look at contribution to it of students’ personal characteristics from a new perspective – in connection with the changes the formal educational system undergoes in response to the current epidemiological situation in the world. The characteristics we considered – emotional tonus, organizational inclinations, and generosity – are significant predictors of the microclimate formation in student groups. As the latter has undeniable effect on various aspects of students’ life, understanding factors that contribute to psychological microclimate has important practical implications. Based on the data obtained in the study, it is advisable to continue this line of research with special attention to the long-term dynamics of the microclimate formation in student groups, taking into account various aspects of interpersonal interactions and in connection with academic outcomes. Research was financially supported by Southern Federal University, 2021, project No. VNGr-07 / 2020-02-AP) 5 Research limitations and perspectives 8 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 Since the study time frame was rather limited, its findings may be somewhat fragmented, as the effects of introducing new instructional formats in response to challenges of the Covid- 19 pandemic might not have fully manifested themselves. The results obtained are also not exhaustive. A substantive portion of variability in the criterion variable remains unexplained that definitely warrants further exploration. Potential lack of statistical power (largely attributable of the organizational issues, including partly restricted access to student population) adds to these limitations and calls for the study replication and expansion with a larger sample of participants. In the future, we plan to supplement and expand our data by repeating the study toward the end of the second academic semester, when it is likely to expect that all studied situational and stable personality characteristics and their relationships with psychological microclimate will be influenced by the changed instructional formats more saliently and consistently. We also intend to recruit a larger sample of participants to increase statistical power of the analyses. All together, this should help determine the effects of instructional formats on the microclimate in student groups with more confidence. With the increased statistical power, we could also expect to detect differences in the microclimate and in respondents’ psychological characteristics of students studying in different instructional formats. We also propose to carry studying the influence of instructional conditions on psychological microclimate beyond the pandemic, when some of these formats may be routinely practiced in institutions of higher education and to include assessment of students’ academic outcomes and learning activities – educational, creative, social, scientific, etc. – in the future research. 1. A. G. Zvezdina, A. Grishina, E. Zvezdina, E. Dyakova, University students' attitude to distance learning in situation of uncertainty, E3S Web of Conferences, 210, 18017 (2020) https://doi.org/10.1051/e3sconf/202021018017 2. S. Alqabbani, A. Almuwais, N. Benajiba, F. Almoayad, Readiness towards emergency shifting to remote learning during COVID-19 pandemic among university instructors, E-Learning and Digital Media 2042753020981651 (2020) https://doi.org/10.1177%2F2042753020981651 References 1. A. G. Zvezdina, A. Grishina, E. Zvezdina, E. Dyakova, University students' attitude to distance learning in situation of uncertainty, E3S Web of Conferences, 210, 18017 (2020) https://doi.org/10.1051/e3sconf/202021018017 2. S. Alqabbani, A. Almuwais, N. Benajiba, F. Almoayad, Readiness towards emergency shifting to remote learning during COVID-19 pandemic among university instructors, E-Learning and Digital Media 2042753020981651 (2020) https://doi.org/10.1177%2F2042753020981651 9 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 3. J.F. Clabaugh, L.J. Duque, Fields, Academic Stress and Emotional Well-Being in United States College Students Following Onset of the COVID-19 Pandemic. Frontiers in Psychology, 12, 628787 (2021) doi: 10.3389/fpsyg.2021.628787 4. E. Denisova, P. Ermakov, I. Skirtach, V. Korkhova, Subjective discomfort and personality traits of university teachers during the COVID-19 pandemic, E3S Web of Conferences, 210, 19021 (2020) https://doi.org/10.1051/e3sconf/202021019021 5. A.V. Grishina, I.V. Abakumova, Informational Behavior in the COVID-19 Pandemic: Psychological Predictors, International Journal of Cognitive Research in Science, Engineering and Education, 8, 59–67 (2020) https://doi.org/10.23947/2334-8496-2020- 8-SI-59-67 6. M. Penado Abilleira, M-L. Rodicio-García, M.P. Ríos-de Deus, M.J. Mosquera- González, Technostress in Spanish University Teachers During the COVID-19 Pandemic. Frontiers in Psychology, 12, 617650 (2021) doi: 10.3389/fpsyg.2021.617650 7. S. Tzivinikou, G. Charitaki, D. Kagkara, Distance Education Attitudes (DEAS) During Covid-19 Crisis: Factor Structure, Reliability and Construct Validity of the Brief DEA Scale in Greek-Speaking SEND. Teachers. Technology, Knowledge and Learning, 1- 19 (2020) 8. Expert committee of the Ministry of Science and Higher Education of the Russian Federation: Survey (2020) https://profsobranie.ru/201 (last accessed: 2021/03/18) 9. E. Borokhovski, D. Pickup, R. Tamim, “Emergency education” model: How normal could the projected new normal be? E3S Web of Conferences – in the current issue (2021) 10. L.A. Dikaya, G.A. Avanesyan, I.S. Dikiy, V.A. Kirik, V.A. Egorova, How Personality Traits are Related to the Attitudes Toward Forced Remote Learning During COVID- 19: Predictive Analysis Using Generalized Additive Modelling. Frontiers in Education (2021) doi: 10.3389/feduc.2021.629213 11. A.V. Grigoryev, The risks of digitalization of school education (based on an Astrakhan teachers survey). Society: sociology, psychology, pedagogy (2020) https://doi.org/10.24158/spp.2020.6.4 12. M. Henderson, N. Selwyn, R. Aston, What works and why? Student perceptions of ‘useful’ digital technology in university teaching and learning. Studies in Higher Education, 8(42), 1567–1579 (2017) https://doi.org/10.1080/03075079.2015.1007946 13. C. Hodges, S. Moore, B. Lockee, T. Trust, A. Bond, The difference between emergency remote teaching and online learning. Educause review, 27, 1-15 (2020) 14. I.S. Kochetkova, L.A. References Terskaia, Experience in using the e-learning system (Moodle) in general scientific and special disciplines. Azimuth of Scientific Research: Pedagogy and Psychology, 4(21), 93–97 (2017) 15. N.A. Mullagaliev, N.V. Urazlina, On the attitude of students to the introduction of distance learning e lements in a university. Innovative science, 1(1), 188–191 (2017) 16. M.G. Sorokova, The digital educational environment of the university: Who is more comfortable studying in it?. Psychological Science and Education, 2(25), 44–58 (2020) https://doi.org/10.17759/pse.2020250204 17. E.A. Bryzgalin, A.E. Vojskunskij, S.A. Kozlovskij, Psychological analysis of practical experience in developing the online encyclopedia “Wikipedia”. Siberian psychological journal, 73, 17–39 (2019). DOI: 10.17223/17267080/73/2. 10 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 18. A.E Vojskunskij, Cyberpsychologist perspectives for the study of group forms of creative activity. Creativity in the modern world: human, society, technology, 22-23. Institute of psychology of RAS, Moscow (2020) 19. A.E. Vojskunskij, T.D. Yermolova, S.R. Yagolkovskij, V.M. Khromova, Creativity in online gaming: individual and dyadic performance in Minecraft. Psychology in Russia: State of the Art, 4(10), 144-161 (2017) 20. F. Biwer, W. Wiradhany, M.G.A. oude Egbrink, H. Hospers, S. Wasenitz, W. Jansen, A.B.H. De Bruin, Changes and Adaptations: How University Students Self-Regulate Their Online Learning during the COVID-19 Pandemic. Frontiers in Psychology (2021) doi: 10.3389/fpsyg.2021.642593 21. Z. Ismail, N. Halias, R. Md Saad, M.F. Mohamed, Motivation as the Mediator in Relationship between Non-verbal Communication of Arabic Language Teachers and Student Learning Outcomes. Universal Journal of Educational Research, 2(8), 700-708 (2020) 22. I.A. Poluekhtova, O. Yu. Vikhrova, E. L. Vartanova, Effectiveness of Online Education for the Professional Training of Journalists: Students’ Distance Learning During the COVID-19 Pandemic. Psychology in Russia: State of the Art, 4(13), 26–37 (2020) DOI: 10.11621/pir.2020.0402 23. S. Rashid, S. S. Yadav, Impact of Covid-19 pandemic on higher education and research. Indian Journal of Human Development, 2(14), 340-343 (2020) DOI: 10.1177/0973703020946700 24. R.M. Bernard, P.C. Abrami, E. Borokhovski, R. Tamim A. Wade, M. Surkes, E. Bethel, A meta-analysis of three types of interaction treatments in distance education. Review of Educational Research, 3(79), 1243-1289 (2009) http://dx.doi.org/10.3102/0034654309333844 25. E. Borokhovski, R. M. Bernard, R. M. Tamim, R. F. Schmid, A. Sokolovskaya, Technology-supported student interaction in post-secondary education: A meta- analysis of designed versus contextual treatments. Computers & Education, 96, 15-28 (2015) http://dx.doi.org/10.1016/j.compedu.2015.11.004 26. V. P. Zinchenko, B. G. Meshcheryakov, Psychological dictionary (Astrel, AST, Transitkniga, Moscow, 2006) 27. V. V. References Zhovtonozhko, A historical analysis of the term of socio-psychological climate in Russian science. Vlast’ 3, 163-167 (2016) 28. S. V. Alexandrovа, The analysis of the psychological microclimate of the student group. Science and education: experience, problems, development prospects, 170-173 (Krasnoyarsk State agricultural university, Krasnoyarsk 2019). 29. T. Konold, D. Cornell, K. Shukla, F. Huang, Racial/ethnic differences in perceptions of school climate and its association with student engagement and peer aggression. Journal of youth and adolescence, 6(46), 1289-1303 (2017). DOI: 10.1007/s10964- 016-0576-1 30. G. G. Bear, C. Yang, D. Chen, X. He, J. S. Xie, X. Huang, Differences in school climate and student engagement in China and the United States. School Psychology Quarterly 2(33), 323–335 (2018). https://doi.org/10.1037/spq0000247 31. A. I. Dontsov, D. A. Dontsov, Methodological and diagnostic foundations of practical research of children, adolescents and youth groups and teams. Bulletin of Practical Psychology of Education, 1, 77-88 (2017) 32. A. O. Prokhorov, Methods for diagnosing and measuring mental states of the individual. (PER SE, Moscow, 2004). 11 E3S Web of Conferences 258, 07076 (2021) UESF-2021 E3S Web of Conferences 258, 07076 (2021) https://doi.org/10.1051/e3sconf/202125807076 33. V.M. Zavyalova, Assessment of the microclimate of a student group. Socio- psychological diagnostics of the development of personality and small groups, 141-142 (Publishing house of the Institute of Psychotherapy, Moscow, 2002) 34. L. N. Sobchik, Methods of psychological diagnostics. Issue 3. Diagnostics of interpersonal relations. Modified version of T. Leary's interpersonal diagnostics. (Method Guide. Moscow, 1990). 35. A. V. Batarshev, I. Yu.,Alekseeva, E. V. Mayorova, Diagnostics of professionally important qualities. (Peter, Moscow, 2006). 36. E. V. Ermolaeva, L. A. Pavlova, Favorable social and psychological climate in the team as a condition for effective work. New science: theoretical and practical view, 3, 50-52 (2015) 37. A. V. Sidorenkov, N. Yu. Ulyanova, O. Yu. Shipitko, Modern foreign researches in psychology of conflicts in small groups. Psychological Journal, 6(38), 30–41 (2017) 12
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Cuticle thickening associated with pyrethroid resistance in the major malaria vector Anopheles funestus
Parasites & vectors
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* Correspondence: basilb@nicd.ac.za 1Malaria Entomology Research Unit, School of Pathology of the University of the Witwatersrand and the National Health Laboratory Service, Johannesburg, South Africa Full list of author information is available at the end of the article © 2010 Wood et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Cuticle thickening associated with pyrethroid resistance in the major malaria vector Anopheles funestus OR Wood1,2, S Hanrahan3, M Coetzee1,2, LL Koekemoer1,2, BD Brooke1,2* OR Wood1,2, S Hanrahan3, M Coetzee1,2, LL Koekemoer1,2, BD Brooke1,2* Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 Abstract Background: Malaria in South Africa is primarily transmitted by Anopheles funestus Giles. Resistance to pyrethroid insecticides in An. funestus in northern Kwazulu/Natal, South Africa, and in neighbouring areas of southern Mozambique enabled populations of this species to increase their ranges into areas where pyrethroids were being exclusively used for malaria control. Pyrethroid resistance in southern African An. funestus is primarily conferred by monooxygenase enzyme metabolism. However, selection for this resistance mechanism is likely to have occurred in conjunction with other factors that improve production of the resistance phenotype. A strong candidate is cuticle thickening. This is because thicker cuticles lead to slower rates of insecticide absorption, which is likely to increase the efficiency of metabolic detoxification. Results: Measures of mean cuticle thickness in laboratory samples of female An. funestus were obtained using scanning electron microscopy (SEM). These females were drawn from a laboratory colony carrying the pyrethroid resistance phenotype at a stable rate, but not fixed. Prior to cuticle thickness measurements, these samples were characterised as either more or less tolerant to permethrin exposure in one experiment, and either permethrin resistant or susceptible in another experiment. There was a significant and positive correlation between mean cuticle thickness and time to knock down during exposure to permethrin. Mean cuticle thickness was significantly greater in those samples characterised either as more tolerant or resistant to permethrin exposure compared to those characterised as either less tolerant or permethrin susceptible. Further, insecticide susceptible female An. funestus have thicker cuticles than their male counterparts. Conclusion: Pyrethroid tolerant or resistant An. funestus females are likely to have thicker cuticles than less tolerant or susceptible females, and females generally have thicker cuticles than males. In pyrethroid resistant An. funestus, this increase in cuticle thickness is likely to have developed as an auxiliary to the primary mode of pyrethroid resistance which is based on enzyme-mediated detoxification. Insecticide exposure assay In order to choose an appropriate adult mosquito age for cuticle thickness measurements, the findings of Cook et al. [14] concerning the expression periods of cuticle gene orthologue Ae-8505 in Aedes aegypti were used as a guide. It was decided to use ten day old female mosqui- toes all drawn from the same FUMOZ cohort. This age cohort was chosen in an effort to minimise variation in thickness due to age dependent gene expression (allow- ing for variation of approximately 24 h as mosquito sam- ples were collected once per day) as well as to obtain cuticles at their thickest in terms of growth and repair. It has previously been established that FUMOZ females show appreciable levels of pyrethroid resistance at 10 days [8]. Cuticle thickening is a gene-regulated process that an insect undergoes as it ages. It has been demonstrated that cuticle is laid down in a circadian pattern, resulting in growth rings of nocturnal lamellate and diurnal non- lamellate structure [11-13]. The periods of transcription of genes coding for cuticle formation have been used to predict age in the dengue vector Aedes aegypti in the field [14], and aging by quantification of cuticle rings has been described for African migratory locusts [15]. Measurable cuticle thickening has been associated with pyrethroid resistance in the Chagas disease vector Triatoma infestans [16] and is tentatively inferred from micro-array gene transcription analysis in An. stephensi [17]. Measurements of rates of insecticide penetration have been found to be affected by thickened cuticles as well as by other structural components of cuticles such as relative amounts of surface hydrocarbons [16], sug- gesting that decreased rates of penetration across the cuticle slows insecticide inoculation of internal organs sufficiently to allow for effective metabolically-mediated detoxification. Twenty adult females were aspirated into a WHO exposure tube containing a 0.75% permethrin treated fil- ter paper supplied by the World Health Organization (WHO). Knockdown of mosquitoes in the exposure tube was continuously monitored for one hour. In order to validate knockdown of an individual, the base directly under the mosquito was lightly tapped in order to ascer- tain whether it was a true knockdown. Any individual that was still able to fly was kept in the exposure tube until it became completely moribund, at which point it was removed using an aspirator carefully inserted into the tube. The time of removal was recorded. Background in affected areas. The effectiveness of this approach hinges on production issues such as insecticide formula- tion, logistical issues such as adequate and timely cover- age, and biological issues of which the emergence of insecticide resistance in target mosquito populations is the most pressing. Malaria in southern Africa is transmitted by Anopheles funestus Giles, the nominal member of the An. funestus species group, and An. arabiensis Patton, a member of the An. gambiae species complex. Malaria vector control in South Africa and many of its neighbouring countries is based on the application of insecticides inside human dwellings and other structures Resistance to pyrethroid insecticides in An. funestus in northern Kwazulu/Natal, South Africa, and in neighbour- ing areas of southern Mozambique enabled populations of this species to increase their ranges into areas where pyrethroids were being exclusively used for malaria con- trol [1-3]. The effect of this range expansion, as well as the emergence of anti-malarial drug resistance, was an * Correspondence: basilb@nicd.ac.za 1Malaria Entomology Research Unit, School of Pathology of the University of the Witwatersrand and the National Health Laboratory Service, Johannesburg, South Africa Full list of author information is available at the end of the article Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Page 2 of 7 of association between these two phenotypes (response to insecticide intoxication and cuticle thickness) pro- vides a critical platform for establishing whether they share a causal relationship, as well as for predicting the potential biological and epidemiological implications of such a relationship. unprecedented malaria epidemic, primarily in Kwazulu/ Natal, South Africa, during the period 1996 to 2000. Ade- quate responses including the re-introduction of DDT and a change in the prescribed anti-malarial drug regi- men succeeded in controlling the epidemic [3,4]. Never- theless, this incident highlighted the potential effect that insecticide resistance can have on an otherwise well- implemented vector control programme. Methods Pyrethroid resistance in southern African An. funestus is primarily based on an enzyme system that employs the up-regulated detoxifying capabilities of at least two P450 monooxygenase genes [2,5-7], with variation in expression of the resistance phenotype by age and gen- der [8]. It is likely that resistance in An. funestus arose comparatively rapidly as a consequence of intense insec- ticide selection pressure [1]. As a result, other factors may be directly or indirectly involved in the expression of the resistance phenotype. One possibility is cuticular thickening. Thicker cuticles lead to slower rates of insecticide absorption, which is likely to enhance the efficiency of metabolic detoxification. Slower insecticide penetration across the cuticle (though not necessarily the result of cuticle thickening) has been associated with insecticide resistance in the cotton bollworm Helicov- erpa armigera [9,10]. Permethrin tolerance assay Anopheles funestus samples Permethrin tolerance assay Anopheles funestus samples p p Samples of An. funestus were drawn from the FUMOZ laboratory colony housed at the VCRU, NICD, in Johan- nesburg. This colony originates from material collected in southern Mozambique and is maintained under stan- dard insectary conditions [8]. FUMOZ carries resistance to the pyrethroid insecticide permethrin at compara- tively stable rates ranging between 5% and 30% mortal- ities [19], as measured using standard insecticide exposure assays against adults [20]. For the gender com- parison, samples of An. funestus were drawn from the FANG laboratory colony. This colony originates from material collected in southern Angola and is fully susceptible to insecticides. Insecticide exposure assay This process was repeated until suitable samples (at least 10) of indi- viduals from the intolerant and tolerant groupings had been collected. Specimen preparation for SEM All females were washed twice in 70% ethanol in order to clean them thoroughly. The legs were given a light brushing in the area of the desired section while under the ethanol. This was done to remove some of the scales that cover the legs in order to facilitate a cleaner cut. Tarsomere I on the left middle leg was severed at the midpoint in a drop of alcohol using a new platinum coated blade (Figures 1 &2). Following the sectioning, the leg was washed again to remove any debris which may obscure the view of the cuticle. Fresh ethanol was gently passed over the section to remove any debris. The leg was left attached to the body. Each mosquito was then placed ventral side up in a foam critical point drying container with the sectioned portion of the leg orientated vertically. The containers were then passed through 70%, 80%, 90% and 100% ethanol. Each step lasted at least two hours and was repeated twice. The final change was allowed to stand overnight, and the ethanol used was kept under a molecular sieve to ensure complete dehydration. The dried specimens were mounted ventral side up on stubs, ensuring vertical positioning of the sectioned part of the leg so as to enable a square measurement across the section from above. Insecticide exposure assay Those indi- viduals that were still active after 60 minutes exposure were grouped as + 60 minutes. These samples were cold-terminated in a fridge at 4°C within five minutes of removal from the permethrin exposure tube, preventing In a preliminary micro-array analysis of pyrethroid resistant and susceptible An. funestus [unpublished data] using the An. gambiae detoxification chip [18], differen- tial transcription of a gene associated with cuticle deposition (JV2) was observed. This provided the impetus to compare cuticle thicknesses between labora- tory reared An. funestus samples characterised by their responses to pyrethroid intoxication. A direct measure Page 3 of 7 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 digitized and examined using Zeiss AxioVision Release 4.6 software to measure the thickness of the cuticle (Figure 3). Measurements were made by tracing the out- line of both the inner and outer circumference of the cuticle and measuring the shortest distance between the two at no fewer than 25 different, evenly distributed points with obvious aberrations such as scale beds excluded. A mean cuticle thickness per specimen was obtained in this way. The permethrin tolerant and intol- erant groups were then compared using one-way ANOVA and a possible trend between cuticle thickness and time to knock-down was evaluated using linear regression (Statistix 7.0 software). further cuticle formation in any of the mosquitoes taken for subsequent analysis. Females representing the ear- liest knock-down cohort were grouped and termed as permethrin intolerant (< 30 minutes to knock-down), whilst females with a knock-down time in excess of 40 minutes were grouped as permethrin tolerant. These time discriminators presented as natural limits for FUMOZ based on exposure observations and are not standardised for anophelines in general. This process was repeated until suitable samples (at least 10) of indi- viduals from the intolerant and tolerant groupings had been collected. further cuticle formation in any of the mosquitoes taken for subsequent analysis. Females representing the ear- liest knock-down cohort were grouped and termed as permethrin intolerant (< 30 minutes to knock-down), whilst females with a knock-down time in excess of 40 minutes were grouped as permethrin tolerant. These time discriminators presented as natural limits for FUMOZ based on exposure observations and are not standardised for anophelines in general. Permethrin susceptibility assay Following the tolerance assays, another large sample of FUMOZ females were taken from a single cohort. In order to offset the effect of circadian cuticular lay-down the sample population was aged to nine days at which point a sub-sample was removed for insecticide expo- sure while the remainder were allowed to age one more day. The nine and ten day old groups were exposed to 0.75% permethrin for 1 hour according to the standard WHO protocol for testing adult anopheline susceptibil- ity to insecticide [20]. Exposures of both sub-samples were conducted at the same time of day under the same conditions. Those survivors from the day 9 exposure were removed on the 10th day following a 24 hour recovery period and were cold terminated as previously described. These sur- vivors were characterised as 10-day-old permethrin resis- tant. Those females that succumbed to permethrin exposure during the day 10 exposure were characterised as 10-day-old permethrin susceptible. In order to accommodate an effect of body size on cuticle thickness, the wing lengths of all females used in the permethrin resistance assay were measured. Wing length gives a good approximation of body size [21]. Specimens were sputter coated with carbon and gold palladium and viewed using a Jeol JSM-840 scanning electron microscope. Micrographs obtained were Specimen preparation for SEM was as described earlier. An FEI Quanta 400 E scanning electron microscope, Figure 1 Illustration of the point of section on An. funestus tarsomere 1 (after Evans [24](t1-t5 = five tarsal segments). Illustration of the point of section on An. funestus tarsomere 1 (after Evans [24](t1-t5 = five tarsal segments). Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 http://www parasitesandvectors com/content/3 Page 4 of 7 http://www.parasitesandvectors.com/content/3/1/67 Figure 2 SEM (FEI Quanta 400 E) micrograph showing an oblique view of the lower half of a sectioned leg. a. Scale. b. Area where scales were brushed away to facilitate a clean section. c. The integument. d. Muscle or tendon (frequently used as a reference point for standardizing points of measure). Figure 3 Micrograph from the FEI Quanta 400E illustrating 16 initial points of cuticle thickness measurement, allowing for calculation of mean cuticle thickness per individual. At least 25 points of measurements were used per individual. Permethrin susceptibility assay Figure 3 Micrograph from the FEI Quanta 400E illustrating 16 initial points of cuticle thickness measurement, allowing for calculation of mean cuticle thickness per individual. At least 25 points of measurements were used per individual. Figure 2 SEM (FEI Quanta 400 E) micrograph showing an oblique view of the lower half of a sectioned leg. a. Scale. b. Area where scales were brushed away to facilitate a clean section. c. The integument. d. Muscle or tendon (frequently used as a reference point for standardizing points of measure). Figure 2 SEM (FEI Quanta 400 E) micrograph showing an oblique view of the lower half of a sectioned leg. a. Scale. b. Area where scales were brushed away to facilitate a clean section. c. The integument. d. Muscle or tendon (frequently used as a reference point for standardizing points of measure). Figure 3 Micrograph from the FEI Quanta 400E illustrating 16 initial points of cuticle thickness measurement, allowing for calculation of mean cuticle thickness per individual. At least 25 points of measurements were used per individual. which became available for use in the interim, was used to obtain digital micrographs. Mean cuticle thickness was compared between the permethrin resistant and suscepti- ble samples using one-way ANOVA (Statistix 7.0 software). Gender comparison Given the variation in insecticide resistance phenotypic expression between males and females in southern Afri- can An. funestus (females are generally more tolerant/ resistant [8]), it was decided to ascertain whether there is significant variation in cuticle thickness by gender. A sample of males and females was removed from a cohort of the FANG colony. This colony was used for this experiment because it does not carry any measur- able insecticide resistance phenotypes, thus removing insecticide resistance as a confounding variable when comparing cuticle thickness between males and females. The sample was aged to five days before being cold ter- minated as in the previous assays. The wing lengths of all individuals used for subsequent cuticle measurements were determined. The mean cuticle thickness of the intolerant specimens was 2.13 μm (SD ± 0.10 μm) while the tolerant specimens showed a mean thickness of 2.33 μm (SD ± 0.22 μm), giv- ing a mean difference of 0.20 μm (Figure 4). This differ- ence is significant based on ANOVA (P = 0.03). A linear regression of time to knock-down (kdt) vs. mean cuticle thickness is shown in Figure 5. There is a significant trend (P = 0.01) in which cuticle thickness gen- erally increases with increasing length of time to knock- down, although the correlation is weak (R2 = 0.33). Permethrin tolerance assay During viewing it was noted that a number of the pre- pared specimens had internal tissue protruding beyond the section edge, obscuring the cuticle. These specimens were discarded. In total, measurements of nine indivi- duals from each of the pyrethroid intolerant and toler- ant samples were obtained. Permethrin susceptibility assay funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. for the female sample (Figure 7). The mean difference of 0.22 μm was significant based on ANOVA (P = 0.01). The mean cuticle thickness of the permethrin suscep- tible specimens was 2.00 μm (SD ± 0.20 μm) while the permethrin resistant specimens showed a mean thick- ness of 2.21 μm (SD ± 0.15 μm) (Figure 6), giving a mean difference of 0.21 μm. This difference is significant (P = 0.02) based on one-way ANOVA. Discussion Insecticide resistant phenotypes and their underlying mechanisms tend to evolve rapidly under intense insec- ticide selection pressure, leading to the prediction that resistance, in general, is likely to be conferred by a small number of major-effect genes [22]. However, differential expression of many genes not normally associated with insecticide resistance may also occur [23]. Permethrin susceptibility assay Measurements of mean cuticle thickness were obtained from 10 females characterised as 10-day-old permethrin resistant and 9 females characterised as 10-day-old per- methrin susceptible. Only one specimen was discarded because of tissue obscuring the cuticle. There was no significant difference in wing-length measurements between the two samples (mean wing-length of resistant sample = 2.86 mm; mean wing-length of susceptible sample = 2.88 mm; P = 0.7084 based on a two sample t test). All specimens were prepared for SEM as described earlier, and the FEI Quanta 400 E scanning electron microscope was used to obtain digital micrographs. The images on all micrographs were analysed and measured as described earlier and the mean cuticle thickness of each specimen was calculated. Mean cuticle thickness was compared between males and females using one- way ANOVA (Statistix 7.0 software). Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Page 5 of 7 Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. Figure 4 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either more or less tolerant to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. funestus laboratory reared females characterised as either resistant or susceptible to permethrin intoxication. Figure 6 Means and variation in cuticle thicknesses (with 95% limits) of two samples of An. Gender comparison One male specimen was discarded owing to tissue obscuring the cuticle, and measurements were obtained from 11 specimens. Two female specimens were dis- carded and cuticle measurements were obtained from 10 specimens. There was no significant variation in wing length between samples (mean wing-length of males = 3.01 mm; mean wing-length of females = 3.12 mm; P = 0.07 based on a 2 sample t test). Measurements of response to permethrin exposure, expressed either in terms of tolerance during exposure or outcome following exposure, show similar associations with mean cuticle thickness. There was a 9.5-10% increase in mean cuticle thickness in those individuals either more tolerant or resistant to permethrin compared p Mean cuticle thicknesses were 1.79 μm (SD ± 0.18 μm) for the male sample and 2.01 μm (SD ± 0.15 μm) Figure 7 Means and variation in cuticle thicknesses (with 95% limits) of female and male An. funestus samples drawn from a laboratory colony that is fully susceptible to insecticide. Figure 7 Means and variation in cuticle thicknesses (with 95% limits) of female and male An. funestus samples drawn from a laboratory colony that is fully susceptible to insecticide. Figure 5 Time-to-knockdown (KDT) during exposure to permethrin vs. mean cuticle thickness (microns). The trend is significant but weakly correlated (R2 = 0.33, P = 0.03). Figure 7 Means and variation in cuticle thicknesses (with 95% limits) of female and male An. funestus samples drawn from a laboratory colony that is fully susceptible to insecticide. Figure 5 Time-to-knockdown (KDT) during exposure to permethrin vs. mean cuticle thickness (microns). The trend is significant but weakly correlated (R2 = 0.33, P = 0.03). Figure 5 Time-to-knockdown (KDT) during exposure to permethrin vs. mean cuticle thickness (microns). The trend is significant but weakly correlated (R2 = 0.33, P = 0.03). Figure 5 Time-to-knockdown (KDT) during exposure to permethrin vs. mean cuticle thickness (microns). The trend is significant but weakly correlated (R2 = 0.33, P = 0.03). Figure 7 Means and variation in cuticle thicknesses (with 95% limits) of female and male An. funestus samples drawn from a laboratory colony that is fully susceptible to insecticide. Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Page 6 of 7 Page 6 of 7 Page 6 of 7 to those that were either less tolerant or permethrin sus- ceptible. Conclusion 4. Maharaj R, Mthembu DJ, Sharp BL: Impact of DDT re-introduction on malaria transmission in KwaZulu-Natal. S Afr Med J 2005, 95:871-874. We conclude that pyrethroid tolerant or resistant An. funestus females are likely to have thicker cuticles than less tolerant or susceptible females, and that females generally have thicker cuticles than males. In pyrethroid resistant An. funestus, this increase in cuticle thickness is likely to have developed as an auxiliary to the primary mode of resistance which is based on enzyme-mediated detoxification. 5. Wondji CS, Morgan J, Coetzee M, Hunt RH, Steen K, Black WC IV, Hemingway J, Ranson H: Mapping a quantitative trait locus (QTL) conferring pyrethroid resistance in the African malaria vector Anopheles funestus. BMC Genomics 2007, 8:34. 6. Wondji CS, Irving H, Morgan J, Lobo NF, Collins FH, Hunt RH, Coetzee M, Hemingway J, Ranson H: Two duplicated P450 genes are associated with pyrethroid resistance in Anopheles funestus, a major malaria vector. Genome Res 2009, 19:452-459. 6. Wondji CS, Irving H, Morgan J, Lobo NF, Collins FH, Hunt RH, Coetzee M, Hemingway J, Ranson H: Two duplicated P450 genes are associated with pyrethroid resistance in Anopheles funestus, a major malaria vector. Genome Res 2009, 19:452-459. 7. Amenya DA, Naguran R, Lo T-C M, Ranson H, Spillings BL, Wood OR, Brooke BD, Coetzee M, Koekemoer LL: Over expression of a cytochrome P450 (CYP6P9) in a major African malaria vector, Anopheles funestus, resistant to pyrethroids. Insect Mol Biol 2008, 17:19-25. 7. Amenya DA, Naguran R, Lo T-C M, Ranson H, Spillings BL, Wood OR, Brooke BD, Coetzee M, Koekemoer LL: Over expression of a cytochrome P450 (CYP6P9) in a major African malaria vector, Anopheles funestus, resistant to pyrethroids. Insect Mol Biol 2008, 17:19-25. Insecticide resistance has the potential to undermine insecticide based vector control applications. Resistance management strategies, which aim to either circumvent or reduce the rate of insecticide resistance development in vector populations, are best served by as complete an understanding of resistance mechanisms and their potential effects as possible. 8. Hunt RH, Brooke BD, Pillay C, Koekemoer LL, Coetzee M: Laboratory selection for and characteristics of pyrethroid resistance in the malaria vector Anopheles funestus. Med Vet Entomol 2005, 19:271-275. 9. Ahmad M, Denholm I, Bromilow RH: Delayed cuticular penetration and enhanced metabolism of deltamethrin in pyrethroid-resistant strains of Helicoverpa armigera from China and Pakistan. Pest Manag Sci 2006, 62:805-810. 10. Acknowledgements Special thanks to Prof. Michael Witcomb and the staff of the Microscopy and Microanalysis Unit of the University of the Witwatersrand, Johannesburg, South Africa, for their technical knowledge, support and special provision in terms of use of and training for the their FEI Quanta 400 Environmental Analytical Scanning Electron Microscope. This project was partially funded by an NHLS Research Trust award to BDB and the DST/NRF Research Chair in Medical Entomology and Vector Control award to MC. References 1. Hargreaves K, Koekemoer LL, Brooke BD, Hunt RH, Mthembu J, Coetzee M: Anopheles funestus resistant to pyrethroid insecticides in South Africa. Med Vet Entomol 2000, 14:181-189. 2. Brooke BD, Kloke G, Hunt RH, Koekemoer LL, Temu EA, Taylor ME, Small G, Hemmingway J, Coetzee M: Biosassay and biochemical analyses of insecticide resistance in southern African An. funestus (Diptera: 2. Brooke BD, Kloke G, Hunt RH, Koekemoer LL, Temu EA, Taylor ME, Small G, Hemmingway J, Coetzee M: Biosassay and biochemical analyses of insecticide resistance in southern African An. funestus (Diptera: Culicidae). Bull Entomol Res 2001, 91:265-272. 3. 3. Coetzee M: Malaria and dengue vector biology and control in southern and eastern Africa. Chapter 9. Bridging Laboratory and Field Research for Genetic Control of Disease Vectors Wageningen UR FrontisKnols BGJ, Louis C 2005, 101-109, Series #11. Gender comparison A link between cuticle thickness and response to insecticide exposure is thus based on the assortment of phenotypes, whereby the permethrin tolerant and resistant groups were significantly associated with thicker cuticles and vice versa. A similar difference in cuticle thickness was observed between insecticide susceptible males and females which may contribute to the differ- ences in tolerance to insecticide intoxication generally observed between genders in An. funestus [8]. Variation in the expression of pyrethroid resistance with age in the FUMOZ colony is most likely based on variation in monooxygenase gene expression. Ten day old FUMOZ mosquitoes show reduced insecticide resistance com- pared to younger cohorts [8], but our data give no indica- tion as to whether this variation is in any way linked to cuticle deposition. Authors’ contributions ORW assisted with experimental design, conducted the experiments, analysed the data and drafted the initial manuscript. SH assisted with experimental design and data interpretation, offered general expertise and advice, and reviewed the manuscript prior to submission. MC assisted with data interpretation and reviewed the manuscript prior to submission. LLK assisted with experimental design and reviewed the manuscript prior to submission. BDB assisted with experimental design, data analysis and interpretation, and produced the final version of the manuscript. Received: 7 July 2010 Accepted: 4 August 2010 Published: 4 August 2010 Received: 7 July 2010 Accepted: 4 August 2010 Published: 4 August 2010 Received: 7 July 2010 Accepted: 4 August 2010 Published: 4 August 2010 Author details 1 1Malaria Entomology Research Unit, School of Pathology of the University of the Witwatersrand and the National Health Laboratory Service, Johannesburg, South Africa. 2Vector Control Reference Unit, National Institute for Communicable Diseases, NHLS, Private Bag X4, Sandringham, 2131, South Africa. 3School of Animal, Plant and Environmental Sciences, University of Witwatersrand, Johannesburg, South Africa. These data support the hypothesis that the efficiency of monooxygenase-based pyrethroid resistance in south- ern African An. funestus is likely to be affected by minor factors. This is because in order to produce an effective resistant phenotype, upregulated transcription of selected P450 monooxygenase genes must produce suffi- cient enzyme to catalyze the metabolism of pyrethroids at a rate that prevents significant interaction between the insecticide and its neuronal target. Therefore, any mechanism that slows or regulates insecticide inocula- tion of internal organs, such as cuticular thickening, is a likely candidate for selection along with the primary mode of resistance. 11. Neville AC: Circadian organization of chitin in some insect skeletons. J Microscop Sci 1965, 106:315-325. Conclusion Gunning RV, Devonshire AL, Moores GD: Metabolism of esfenvalerate by pyrethroid susceptible and resistant Australian Helicoverpa armigera (Lepidoptera: Noctuidae). Pestic Biochem Physiol 1995, 51:205-213. List of Abbreviations SEM: Scanning Electron Microscopy; WHO: World Health Organisation; ANOVA: Analysis of Variance. List of Abbreviations 11. Neville AC: Circadian organization of chitin in some insect skeletons. J Microscop Sci 1965, 106:315-325. 12. Dingle H, Caldwell RL, Haskell JB: Temperature and circadian control of cuticle growth in the bug, Oncopeltus fasciatus. J Insect Physiol 1969, 15:373-378. 12. Dingle H, Caldwell RL, Haskell JB: Temperature and circadian control of cuticle growth in the bug, Oncopeltus fasciatus. J Insect Physiol 1969, 15:373-378. Competing interests The authors declare that they have no competing interests. Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 13. Tyndale-Biscoe M: Age-grading methods in adult insects: a review. Bull Entomol Res 1984, 74:341-377. 14. Cook PE, Hugo LR, Iturbe-Ormaetxe I, Williams CR, Chenoweth SF, Ritchie SA, Ryan PA, Kay BH, Blows MW, O’Neill SL: The use of transcriptional profiles to predict adult mosquito age under field conditions. Proc Natl Acad Scis 2006, 103:18060-18065. 15. Hanrahan SA: Ageing of field and laboratory reared African migratory locusts by means of cuticle growth. J Entomol Soc South Afr 1992, 55:59-69. 16. Pedrini N, Mijailovsky SJ, Girotti JR, Stariolo R, Cardozo RM, Gentile A, Juarez MP: Control of pyrethroid-resistant Chagas disease vectors with entomopathogenic fungi. PLoS Negl Trop Dis 2009, 3:e434. 17. Vontas J, David JP, Nikou D, Hemingway J, Christophides GK, Louis C, Ranson H: Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization. Insect Mol Biol 2007, 16:315-324. 18. David JP, Strode C, Vontas J, Nikou D, Vaughan A, Pignatelli PM, Louis C, Hemingway J, Ranson H: The Anopheles gambiae detoxification chip: a highly specific microarray to study metabolic based insecticide resistance in malaria vectors. Proc Natl Acad Scis 2005, 102:4080-4084. 19. Okoye P: Biology of insecticide resistance in the African malaria vector Anopheles funestus. PhD thesis University of the Witwatersrand Johannesburg, South Africa Animal, Plant and Environmental Sciences 2008. 19. Okoye P: Biology of insecticide resistance in the African malaria vector Anopheles funestus. PhD thesis University of the Witwatersrand Johannesburg, South Africa Animal, Plant and Environmental Sciences 2008. 20. World Health Organization: Test procedures for insecticide resistance monitoring in malaria vectors bio-efficacy and persistence of insecticides on treated surfaces. Geneva Switzerland 1998, Document WHO/CDS/CPC/MAL/98.12. 20. World Health Organization: Test procedures for insecticide resistance monitoring in malaria vectors bio-efficacy and persistence of insecticides on treated surfaces. Geneva Switzerland 1998, Document WHO/CDS/CPC/MAL/98.12. 21. Lyimo EO, Takken W: Effects of adult body size on fecundity and the pre- gravid rate of Anopheles gambiae females in Tanzania. Med Vet Entomol 1993, 7:328-332. 22. Ffrench-Constant RH, Daborn PJ, Le Goff G: The genetics and genomics of insecticide resistance. Trends in Genetics 2004, 20:163-170. 22. Ffrench-Constant RH, Daborn PJ, Le Goff G: The genetics and genomics of insecticide resistance. Trends in Genetics 2004, 20:163-170. 23. Competing interests Th h d l h Page 7 of 7 Page 7 of 7 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Wood et al. Parasites & Vectors 2010, 3:67 http://www.parasitesandvectors.com/content/3/1/67 Vontas J, Bass C, Koutsos AC, David J-P, Kafatos FC, Louis C, Hemmingway J, Christophides GK, Ranson H: Gene expression in insecticide resistant and susceptible Anopheles gambiae strains constitutively or after insecticide exposure. Insect Mol Biol 2005, 14:509-521. 24. Evans AM: Mosquitoes of the Ethiopian Region. II. London: British Museum (Natural History) 1938. doi:10.1186/1756-3305-3-67 Cite this article as: Wood et al.: Cuticle thickening associated with pyrethroid resistance in the major malaria vector Anopheles funestus. Parasites & Vectors 2010 3:67. 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Time-ResNeXt for epilepsy recognition based on EEG signals in wireless networks
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Introduction Epilepsy is a brain disease that is caused by persistent susceptibility to recurrent seizures and the neurobiological, cognitive, psychological, and social consequences that result. According to estimates by the World Health Organization (WHO), about 2.4 million people worldwide are diagnosed with epilepsy every year [1]. Prolonged, frequent or severe seizures can lead to further brain damage and even persistent neuropsychiatric disorders. Sudden epilepsy (SUDEP) is a serious complication of epilepsy and is one of the most common causes of death in younger patients with epilepsy. The timely diagnosis of the presence and type of epilepsy is critical to its prognosis and choice of treatment options [2]. However, the diagnosis of epilepsy is relatively difficult, especially for the detection of seizures in newborns [3,4]. The usual clinical experience is judged by observing the behavior and other seizures of the newborn, but this is easily confused with other normal behaviors [5]. Epilepsy is often attributed to excessive abnormal discharges of neurons in the brain [6,7]. Electroencephalogram signals provide a powerful tool for the diagnosis of epilepsy. Experienced neuropathologists interpret EEG signals by observing the patterns of seizures and the period of seizures, and have formulated certain international standards to find specific signal characteristics in multi-channel electroencephalography [8,9]. Then, the condition of the patient is judged by the EEG signal rule that is manually explained. This method is relatively time-consuming and subjective, and it is objectively prone to errors [10,11]. Therefore, a suitable mechanism is needed to automatically interpret and classify EEG signals in patients with epilepsy. EEG signal automatic classification methods usually use traditional manual feature machine learning and statistical methods, such as time- frequency analysis using wavelet transform [12], detection method using entropy estimator [13], discrete wavelet transform and approximate entropy Method [14] and so on. In addition, there are also methods for detecting using shallow neural networks using artificial features, such as Elman and Probabilistic Neural Networks [15], which use approximate entropy as input features of the network, artificial neural networks [16] The method using Volterra system and cellular nonlinear network [17] and so on. With the development of the field of machine learning in recent years, a large number of excellent machine learning classification algorithms have emerged, the most representative of which is the deep neural network algorithm. Research Keywords: artificial intelligence, deep learning, epilepsy detection, Time-ResNeXt DOI: https://doi.org/10.21203/rs.2.23963/v2 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on October 7th, 2020. See the published version at https://doi.org/10.1186/s13638-020-01810-5. Page 1/11 Page 1/11 Abstract To automatically detect dynamic EEG signals to reduce the time cost of epilepsy diagnosis. In the signal recognition of electroencephalogram (EEG)of epilepsy, traditional machine learning and statistical methods require manual feature labeling engineering in order to show excellent results on a single data set. And the artificially selected features may carry a bias, and cannot guarantee the validity and expansibility in real-world data. In practical applications, deep learning methods can release people from feature engineering to a certain extent. As long as the focus is on the expansion of data quality and quantity, the algorithm model can learn automatically to get better improvements. In addition, the deep learning method can also extract many features that are difficult for humans to perceive, thereby making the algorithm more robust. Based on the design idea of ​ResNeXt deep neural network, this paper designs a Time-ResNeXt network structure suitable for time series EEG epilepsy detection to identify EEG signals. The accuracy rate of Time-ResNeXt in the detection of EEG epilepsy can reach 91.50%. The Time-ResNeXt network structure produces extremely advanced performance on the benchmark dataset (Berne-Barcelona dataset), and has great potential for improving clinical practice. Introduction Especially in the field of image classification, deep learning methods, such as VGG [18] network, Google Inception [19] network, and ResNet [20] network, have powerful automatic feature extraction capabilities [21], which have been completely completed in some fields Beyond traditional machine learning and statistical methods and shallow artificial neural network methods, it can even identify targets that are difficult to distinguish with the naked eye, surpassing humans. In addition, many large companies have also adopted the method of deep learning as one of their core competitiveness [22,23,24]. This paper draws on the excellent deep neural network structure in the image field, and designs an excellent end-to-end network structure based on ResNeXt [25] and suitable for EEG signal epileptic detection. And the performance of the network is verified on a public standard dataset (Berne Barcelona EEG dataset [26]), and compared with traditional algorithms [27,28,29,30] using this dataset, for us the performance of the algorithm is evaluated. The transformation set structure is shown in Fig. 5. The transformation set structure is shown in Fig. 5. The convolution modules of the transform set are all the same. ResNeXt uses a transformation set to replace the transformation structure of the Inception network. Because each aggregated topology is the same, the network no longer needs to modify too many hyperparameters on different data sets, which has better robustness. 2.1 Data description The data are from the EEG database of Berne Barcelona and are divided into two categories: EEG signal data during the onset of epilepsy patients and EEG signal data during the onset of epilepsy patients. Each category has 3750 pieces of data, each piece of data has 2 signal Page 2/11 Page 2/11 channels with a length of 10240 and a sampling frequency of 512Hz (the time length of each piece of data is 20s). Part of the original EEG image is shown in Fig. 1. channels with a length of 10240 and a sampling frequency of 512Hz (the time length of each piece of data is 20s). Part of the original EEG image is shown in Fig. 1. 3.2 Model design process The original ResNeXt-50 has five stages and a large number of parameters, as shown in Fig. 6. The original ResNeXt-50 has five stages and a large number of parameters, as shown in Fig. 6. During training, it is found that the results are difficult to converge and tend to be completely random. Therefore, it was determined that the network structure was too complicated. Starting from the complexity of the network, the network was tailored to try to find a suitable structure. The test results are shown in Table 2. 2.2 Training data preparation Due to the balanced data classification, there is no data deviation. So there is no data enhancement for a single category. Only the data set is divided to prepare for model training. The method is shown in Table 1. The original data set is randomly divided into a training set (3000 items / category), a validation set (250 items / category), and a test set (500 items/category). 3.1 Model design ideas ResNeXt's deep learning network model structure design idea is followed. According to the data characteristics of EEG signals, a network structure Time-ResNeXt is designed for EEG time series classification. According to the traditional idea of designing network structures to improve the accuracy of the model, most of them are to deepen or widen the structure of the network, but as the number of hyperparameters (such as the number of channels, the size of the convolution kernel, etc.) increases, neural network design The difficulty and computational overhead also increase greatly. The algorithm in this paper benefits from the repeated topology of the ResNeXt network sub-modules, which enables it to have a very high accuracy rate while slightly increasing the amount of network calculations, while also greatly reducing the number of hyperparameters. First, I have to mention the classic VGG network and Inception network. The design idea of VGG network is: modularize the neural network to increase the depth, but such a deep network will cause network degradation due to gradients. The structure of VGG network key modules is shown in Fig. 2. The design philosophy of the Inception network is exactly the opposite: the width of the network is increased by the split-transform-merge method, but the settings of the various hyperparameters of this Inception network are more targeted and need to be performed when applied to other data sets. Many modifications, so scalability is average. The structure of the key modules of the Inception network is shown in Fig. 3. The ResNeXt network is based on the design idea of ResNet's cross-layer connection, and combines the VGG and Inception networks. And through the structure of ResNet cross-layer connection to improve the shortcomings of VGG network too deep degradation. The cross-layer connection structure is shown in Fig. 4. 3.3 Time-ResNeXt network structure The structure of Time-ResNeXt neural network is shown in Table 3. It has two phases in total. The detailed network structure of the first phase is shown in Fig. 7. The depth of the second phase of the network structure is 2, that is, two network structure sub-modules, each of which contains cross-layer connections, activation layers, convolutional layers, batch normalization layers, and transform set modules. The main structure is The transformation set module, which uses a network design structure in a network, is a module for forming a convolution transformation set by connecting 32 convolutional structural blocks as shown in Fig. 8 in parallel, which is the main feature extraction module. Page 3/11 4.4 Training process records The results of the training set are shown in Fig. 9, the X-axis is the training algebra, and the Y-axis is the training evaluation index. The results of the validation set are shown in Fig. 10. The results of the validation set are shown in Fig. 10. The results show that at 74th generation, the model performs best on the validation data, with a correct rate of 0.9150. The results show that at 74th generation, the model performs best on the validation data, with a correct rate of 0.9150. The results show that at 74th generation, the model performs best on the validation data, with a correct rate of 0.9150. Conclusion Automatically detect dynamic EEG signals to reduce the time cost of epilepsy diagnosis. In the signal recognition of epilepsy electroencephalogram (EEG), traditional machine learning and statistical methods require manual feature labeling engineering in order to show excellent results on a single data set. Based on the design idea of ResNeXt deep neural network, this paper designs a Time-ResNeXt network structure suitable for time series EEG epilepsy detection to identify EEG signals. The accuracy of Time-ResNeXt in EEG epilepsy detection can reach 91.50%. The Time-ResNeXt network structure produces extremely advanced performance on a benchmark dataset , with great potential to improve clinical practice. Results And Discussion Through continuous training of the model, the accuracy rate finally reached 0.9050, achieving an extremely advanced performance. Its pair is shown in Table 5. In addition, there are many areas in this mission where you can continue to improve. For example, you can use Hard Example Mining to train difficult samples. Increasing the amount of data is also an extremely good method. The causes of epilepsy are complex. Trying more detailed multi-classification will help decouple the data and further reduce the difficulty of model training. All in all, our classifier has achieved an extremely good performance and has excellent scalability on the Bern dataset in Barcelona. As the amount of data in real business scenarios increases, it will show even better performance. 4.2 Loss function and evaluation index The loss function uses the cross entropy function of L2 regularization attenuation. The cross entro The loss function uses the cross entropy function of L2 regularization attenuation. The cross entropy function is calculated as follows. tropy function of L2 regularization attenuation. The cross entropy function is calculated as follows. The loss function uses the cross entropy function of L2 regularization attenuation. The cross entropy function is calculated as follows. S f l 1 2 d 3 i th l t fil See formulas 1, 2, and 3 in the supplementary files. In order to further avoid overfitting, an early stopping training strategy is adopted. When the model exceeds 30 consecutive generations of evaluation indicators and does not improve on the validation set, training is stopped. This can prevent the model from over-learning on the training set, avoid excessive bias, and reduce the generalization performance of the model. 4.4 Training process records 4.1 Optimizer Use Adam's algorithm as the optimizer. The Adam algorithm is an algorithm that performs a stepwise optimization on a random objective function. This algorithm is based on adaptive low-order moment estimation, has high computational efficiency and low memory requirements. The adaptive learning rate of different parameters can be calculated by estimating the first and second gradients. In addition, the gradient rescaling of Adam's algorithm is invariant, so it is very suitable for solving problems with large-scale data or parameters. The advantages are: easy to implement, efficient calculation, less memory required, invariance of gradient diagonal scaling, and only minimal tuning. The parameter settings of the Adam optimizer are shown in Table 4. Among them, lr refers to the step size, that is, the step size of each gradient descent. Decay is a weight decay factor, which avoids overfitting by adding a regular term to the loss function. Declarations Acknowledgements Acknowledgements Page 4/11 Abbreviations WHO: World Health Organization; FN:False Negative; FP:False Positive;TN:True Negative;TP:True Positive; TPR:True Positive Rate; FPR:False Positive Rate WHO: World Health Organization; FN:False Negative; FP:False Positive;TN:True Negative;TP:True Positive; TPR:True Positive Rate; FPR:False Positive Rate Competing interests The authors declare that they have no competing interests. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. 1School of Computer and Communication Engineering ,China University of Petroleum(East of China),Qingdao 266000, P. R. China 2Department of Psychology,The Open University England Walton Hall Milton Keynes MK7 6AA 3Affiliated Hospital of Qingdao University Qingdao 266000, P. R. China 3Affiliated Hospital of Qingdao University Qingdao 266000, P. R. China 4Department of Traditional Chinese Medicine ,Shandong University of Traditional Chinese Medicine Jinan 250000, P. R. China 4Department of Traditional Chinese Medicine ,Shandong University of Traditional Chinese Medicine Jinan 250000, P. R. China 5 Harvard Medical School, Harvard University Cambridge, Massachusetts 02215 Page 4/11 The authors acknowledged the anonymous reviewers and editors for their efforts in valuable comments and suggestions. Funding The authors acknowledged the anonymous reviewers and editors for their efforts in valuable comments and suggestions. This work was supported by the National Natural Science Foundation of China (61873281, 61572522, 61502535, 61972416 and 61672248). Availability of data and materials Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study. Authors’ contributions S.Q. Wang proposes the innovation ideas and theoretical analysis, and S.D. Wang carries out experiments and data analysis. Z. Song and Y.F.Wang conceived of the study, and participated in its design and coordination and helped to draft the manuscript. All authors read and approved the final manuscript. References He K, Zhang X, Ren S, et al. Deep residual learning for image recognition//Proceedings of the IEEE conference on computer vision and pattern recognition. 2016: 770-778. LeCun, Y., Bengio. Y., Hinton. G., 2015. Deep learning, Nature, 521:436-444. 21. LeCun, Y., Bengio. Y., Hinton. G., 2015. Deep learning, Nature, 521:436-444. 21. LeCun, Y., Bengio. Y., Hinton. G., 2015. Deep learning, Nature, 521:436-444. 21. LeCun, Y., Bengio. Y., Hinton. G., 2015. Deep learning, Nature, 521:436-444. 22. Glorot. X., Bordes. A., Bengio. Y., 2010. Deep sparse rectifier neural networks, Journal of Machine L 23. Goodfellow. I., Bengio. Y., Courville. A., 2016. Deep Learning. MIT Press, http://www.deeplearningb 23. Goodfellow. I., Bengio. Y., Courville. A., 2016. Deep Learning. MIT Press, http://www.deeplearningbook.org. 23. Goodfellow. I., Bengio. Y., Courville. A., 2016. Deep Learning. MIT Press, http://www.deeplearningbook.org. 24. Lee. J. G., Jun. S. H., Cho. Y. W., Lee. H., Kim. G. B., Seo. J. B., Kim. N., 2017. Deep learning in medic Journal of Radiology, 18(4):570-584. 24. Lee. J. G., Jun. S. H., Cho. Y. W., Lee. H., Kim. G. B., Seo. J. B., Kim. N., 2017. Deep learning in medical imaging: General overview, Korean Journal of Radiology, 18(4):570-584. 24. Lee. J. G., Jun. S. H., Cho. Y. W., Lee. H., Kim. G. B., Seo. J. B., Kim. N., 2017. Deep learning in medical imaging: General overview, Korean Journal of Radiology, 18(4):570-584. 25. Xie S, Girshick R, Dollár P, et al. Aggregated residual transformations for deep neural networks//Proceedings of the IEEE conference on computer vision and pattern recognition. 2017: 1492-1500. 25. Xie S, Girshick R, Dollár P, et al. Aggregated residual transformations for deep neural networks//Proceedings of the IEEE conference on computer vision and pattern recognition. 2017: 1492-1500. 26. Andrzejak R G, Schindler K, Rummel C. Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients. Physical Review E, 2012, 86(4): 046206. 26. Andrzejak R G, Schindler K, Rummel C. Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients. Physical Review E, 2012, 86(4): 046206. 27. Sharma, R., Pachori, R.B., Gautam, S.: Empirical mode decomposition based classification of focal and non-focal seizure eeg signals. In: Medical Biometrics, 2014 International Conference on. pp. 135–140. IEEE (2014). 27. Sharma, R., Pachori, R.B., Gautam, S.: Empirical mode decomposition based classification of focal and non-focal seizure eeg signals. In: Medical Biometrics, 2014 International Conference on. pp. 135–140. IEEE (2014). 28. References Sharma, R., Pachori, R.B., Acharya, U.R.: An integrated index for the identification of focal electroencephalogram signals using discrete wavelet transform and entropy measures. Entropy 17(8), 5218–5240 (2015). 28. Sharma, R., Pachori, R.B., Acharya, U.R.: An integrated index for the identification of focal electroencephalogram signals using discrete wavelet transform and entropy measures. Entropy 17(8), 5218–5240 (2015). 29. Das, A.B., Bhuiyan, M.I.H.: Discrimination and classification of focal and non-focal eeg signals using entropy-based features in the emd- dwt domain. Biomedical Signal Processing and Control 29, 11–21 (2016). 29. Das, A.B., Bhuiyan, M.I.H.: Discrimination and classification of focal and non-focal eeg signals using entropy-based features in the emd- dwt domain. Biomedical Signal Processing and Control 29, 11–21 (2016). 30. Bhattacharyya, A., Sharma, M., Pachori, R.B., Sircar, P., Acharya, U.R.: A novel approach for automated detection of focal eeg signals using empirical wavelet transform. Neural Computing and Applications 29(8), 47–57 (2018). 30. Bhattacharyya, A., Sharma, M., Pachori, R.B., Sircar, P., Acharya, U.R.: A novel approach for automated detection of focal eeg signals using empirical wavelet transform. Neural Computing and Applications 29(8), 47–57 (2018). References Entropies for detection of epilepsy in EEG. Computer methods and programs in biomedicine, 2005, 80(3): 187-194. 13. Kannathal N, Choo M L, Acharya U R, et al. Entropies for detection of epilepsy in EEG. Computer methods and programs in biomedicine, 2005, 80(3): 187-194. 14. Ocak H. Automatic detection of epileptic seizures in EEG using discrete wavelet transform and approximate entropy. Expert Systems with Applications, 2009, 36(2): 2027-2036. 14. Ocak H. Automatic detection of epileptic seizures in EEG using discrete wavelet transform and approximate entropy. Expert Systems with Applications, 2009, 36(2): 2027-2036. 15. Srinivasan V, Eswaran C, Sriraam N. Approximate entropy-based epileptic EEG detection using artificial neural networks. IEEE Transactions on information Technology in Biomedicine, 2007, 11(3): 288-295. 15. Srinivasan V, Eswaran C, Sriraam N. Approximate entropy-based epileptic EEG detection using artificial neural networks. IEEE Transactions on information Technology in Biomedicine, 2007, 11(3): 288-295. 16. Guo L, Rivero D, Dorado J, et al. Automatic epileptic seizure detection in EEGs based on line length feature and artificial neural networks. Journal of neuroscience methods, 2010, 191(1): 101-109. 16. Guo L, Rivero D, Dorado J, et al. Automatic epileptic seizure detection in EEGs based on line length feature and artificial neural networks. Journal of neuroscience methods, 2010, 191(1): 101-109. 17. Tetzlaff R, Niederhöfer C, Fischer P. Automated detection of a preseizure state: non‐linear EEG analysis in epilepsy by Cellular Nonlinea Networks and Volterra systems. International journal of circuit theory and applications, 2006, 34(1): 89-108. 17. Tetzlaff R, Niederhöfer C, Fischer P. Automated detection of a preseizure state: non‐linear EEG analysis in epilepsy by Cellular Nonlinear Networks and Volterra systems. International journal of circuit theory and applications, 2006, 34(1): 89-108. 18. Simonyan K, Zisserman A. Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556, 2014. 18. Simonyan K, Zisserman A. Very deep convolutional networks for large-scale image recognition 18. Simonyan K, Zisserman A. Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556, 2014. 19. Szegedy C, Liu W, Jia Y, et al. Going deeper with convolutions//Proceedings of the IEEE conference on computer vision and pattern recognition. 2015: 1-9. 19. Szegedy C, Liu W, Jia Y, et al. Going deeper with convolutions//Proceedings of the IEEE conference on computer vision and pattern recognition. 2015: 1-9. 20. He K, Zhang X, Ren S, et al. Deep residual learning for image recognition//Proceedings of the IEEE conference on computer vision and pattern recognition. 2016: 770-778. 20. References 1. Wu, B., Cheng, T.T., Yip, T. L., & Wang, Y. (2020). Fuzzy logic based dynamic decision-making system for intelligent navigation strategy within inland traffic separation schemes. Ocean Engineering, 197, 106909. 2. Zhenhua Huang, Xin Xu, Juan Ni, Honghao Zhu, Cheng Wang. Multimodal representation learning for recommendation in Internet of Things. IEEE Internet of Things Journal, 2019, 6(6): 10675-10685. 3. Boylan, G. B., Stevenson, N. J. & Vanhatalo, S. Monitoring neonatal seizures. Semin. Fetal Neonat. 4. Lloyd, R. O., O’Toole, J. M., Pavlidis, E., Filan, P. M. & Boylan, G. B. Electrographic seizures during the early postnatal period in preterm infants. J. Pediatrics 187, 18–25 (2017). 5. Murray, D. M. et al. Defining the gap between electrographic seizure burden, clinical expression, and staff recognition of neonatal seizures. Arch. Dis. Child-Fetal 93, F187–F191 (2008). 6. American Epilepsy Society, Facts and figures. https://www.aesnet.org/for_patients/facts_figures. 7. Zhenhua Huang, Xin Xu, Honghao Zhu, MengChu Zhou. An efficient group recommendation model with multiattention-based neural networks. IEEE Transactions on Neural Networks and Learning Systems (2020). doi: 10.1109/ TNNLS.2019.2955567. 8. Tsuchida, T. N. et al. American Clinical Neurophysiology Society standardized EEG terminology and categorization for the description of continuous EEG monitoring in neonates: report of the American Clinical Neurophysiology Society critical care monitoring committee. J Clin Neurophysiol 30, 161–173 (2013). Page 5/11 Page 5/11 9. Srinivasakumar, P. et al. Treating EEG seizures in hypoxic ischemic encephalopathy: a randomized controlled trial. Pediatrics. 136, e1302–e1309 (2015). 10. Krumholz. A., Wiebe. S., Gronseth. G., Shinnar. S., Levisohn. P., Ting. T., Hopp. J., Shafer. P., Morris. H., Seiden. L., Barkley. G., French. J., Quality Standards Subcommittee of the American Academy of Neurology, 2007. Practice Parameter: evaluating an apparent unprovoked first seizure in adults (an evidence-based review): report of the Quality Standards Subcommittee of the American Academy of Neurology and the American Epilepsy Society, American Epilepsy Society, Neurology, 69(21). 11. Rennie, J. M. et al. Non-expert use of the cerebral function monitor for neonatal seizure detection. Arch. Dis. Child-Fetal 89, F37–F40 (2004). 12. Tzallas A T, Tsipouras M G, Fotiadis D I. Epileptic seizure detection in EEGs using time–frequency analysis. IEEE transactions on information technology in biomedicine, 2009, 13(5): 703-710. 12. Tzallas A T, Tsipouras M G, Fotiadis D I. Epileptic seizure detection in EEGs using time–frequency analysis. IEEE transactions on information technology in biomedicine, 2009, 13(5): 703-710. 13. Kannathal N, Choo M L, Acharya U R, et al. Tables Page 6/11 Table 1 Data allocation table   training set validation set test set Epilepsy signal 3000 250 500 Non-epileptic signal 3000 250 500 total 6000 500 1000 Page 6/11 ta allocation table   training set validation set test set Epilepsy signal 3000 250 500 Non-epileptic signal 3000 250 500 total 6000 500 1000 Table 1 Data allocation table Page 6/11   training set validation set test set Epilepsy signal 3000 250 500 Non-epileptic signal 3000 250 500 total 6000 500 1000 Page 6/11 Table 2 Model optimization table p Included Network Phase Network depth at each stage Training result (correct rate) Model parameter amount First and second stage -,1 0.8413 63,682 First and second stage -,2 0.9050 132,802 First and second stage -,3 0.8886 201,922 rst second and third stage -,2,1 0.8847 473,282 work Phase Network depth at each stage Training result (correct rate) Model parameter amount Included Network Phase Network depth at each stage Training result (correct rate) Model parameter amount First and second stage -,1 0.8413 63,682 First and second stage -,2 0.9050 132,802 First and second stage -,3 0.8886 201,922 rst second and third stage -,2,1 0.8847 473,282 Table 3 Time-ResNeXt neural network structure Resnext 7*7,64,stride 2 3*3 max pool,stride 2   Global average pool 1000-d fc,softmax Table 4 Adam optimizer parameters parameter name Parameter value Lr 0.001 beta_1 0.9 beta_2 0.999 Epsilon 1e-8 Decay 0.01 Table 3 Time-ResNeXt neural network structure Table 4 Adam optimizer parameters parameter name Parameter value Lr 0.001 beta_1 0.9 beta_2 0.999 Epsilon 1e-8 Decay 0.01 Table 5 Model comparison Reference Method Accuracy (%) Sharma et al. (2014) Empirical modedecomposition (EMD) 87 M. Sharma et al. (2015) Discrete wavelet transform (DWT) 84 AB. Das et al. (2016) EMD-DWT 89.04 Bhattacharyya et al. (2018) EME-DWT + SVM (50 pairs) 90.0 Our Method Small ResNext on EEG 91.5 Table 5 Model comparison Reference Method Accuracy (%) Sharma et al. (2014) Empirical modedecomposition (EMD) 87 M. Sharma et al. (2015) Discrete wavelet transform (DWT) 84 AB. Das et al. (2016) EMD-DWT 89.04 Bhattacharyya et al. (2018) EME-DWT + SVM (50 pairs) 90.0 Our Method Small ResNext on EEG 91.5 Other related evaluation indicators are shown in Table 6. Other related evaluation indicators are shown in Table 6. Other related evaluation indicators are shown in Table 6. Tables Table 6 Time-ResNeXt network evaluation Evaluation index Calculation formula Corresponding value Correct rate   0.9150 Specificity   0.8480 Recall   0.9620 Missed diagnosis rate   0.0380 Misdiagnosis rate   0.1520 Evaluation index Calculation formula Corresponding value Correct rate   0.9150 Specificity   0.8480 Recall   0.9620 Missed diagnosis rate   0.0380 Misdiagnosis rate   0.1520 Figures Figure 2 Structure of key modules of VGG network:The typical structural unit of the VGG model has four layers. The first three were 3 * 3 convolutional layers, with 256 channels. The fourth layer is a 3 * 3 convolution layer plus a pooling layer. Page 8/11 y , y y p p g y Figure 3 The structure of the key modules of the Inception network Figure 4 Cross-layer connection structure Figure 3 Figure 3 Figure 3 The structure of the key modules of the Inception network The structure of the key modules of the Inception network Figures Figures Page 7/11 Figure 1 Part of the EEG image:An example of ECG time series data for two channels. The sequence length is 10240, the sampling frequency is 512Hz, and the time is 20s. Fi 2 Part of the EEG image:An example of ECG time series data for two channels. The sequence length is 10240, the sampling frequency is 512Hz, and the time is 20s. Figure 4 Cross-layer connection structure Page 8/11 Figure 5 Transform Set Structure Transform Set Structure Figure 6 ResNeXt-50 module Figure 6 ResNeXt-50 module Figure 6 Page 9/11 Figure 7 Detailed network structure of the first phase of Time-ResNeXt Figure 8 Detailed network structure of the first phase of Time-ResNeXt Detailed network structure of the first phase of Time-ResNeXt Detailed network structure of the first phase of Time-ResNeXt Figure 8 Detailed network structure of the first phase of Time-ResNeXt Detailed network structure of the first phase of Time-ResNeXt Figure 8 Detailed network structure of the first phase of Time-ResNeXt Detailed network structure of the first phase of Time-ResNeXt Detailed network structure of the first phase of Time-ResNeXt Page 10/11 Figure 9 Training set results: The results of the training set are shown in this, the X-axis is the training algebra, and the Y-axis is the training evaluation index. Figure 9 Training set results: The results of the training set are shown in this, the X-axis is the training algebra, and the Y-axis is the training evaluation index. Page 10/11 Page 10/11 Figure 10 Validation set results: The results show that at 74th generation, the model performs best on the validation data, with a correct rate of 0.9150. Figure 10 alidation set results: The results show that at 74th generation, the model performs best on the valida Validation set results: The results show that at 74th generation, the model performs best on the validation data, with a correct rate of 0.9150. Page 11/11
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An Exploration of Evolution, Maturation, Expression and Function Relationships in Mir-23∼27∼24 Cluster
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Abstract The study aims to explore the potential relationships of evolution, maturation, expression and function between homologous/clustered miRNAs. mir-23,27,24 gene cluster, including the two gene clusters (mir-23a and mir-23b) and the three miRNA gene families (mir-23, mir-27 and mir-24), was typically selected as an example. These related miRNAs show similar evolutionary patterns and various expression patterns. Most of them show consistent isomiR expression pattern, and the ‘‘switching’’ phenomenon can be found between different abundant isomiR species. These findings suggest that these sequence or location related miRNAs show the similar miRNA processing and maturation processes, and the robust selection of the most dominant isomiR exists in specific tissues. Functional analysis show that these miRNAs show similar distributions of enriched gene categories, suggesting the close functional prelateships via direct or indirect coordinate regulation in biological processes. The study reveals the close evolutionary, expression and functional relationships between related homologous/clustered miRNAs, which will further enrich miRNA studies and understand direct or indirect interactions between miRNAs. Citation: Liang T, Yu J, Liu C, Guo L (2014) An Exploration of Evolution, Maturation, Expression and Function Relationships in Mir-23,27,24 Cluster. PLoS ONE 9(8): e106223. doi:10.1371/journal.pone.0106223 Editor: Yu Xue, Huazhong University of Science and Technology, China Editor: Yu Xue, Huazhong University of Science and Technology, China Received April 21, 2014; Accepted July 29, 2014; Published August 26, 2014 Received April 21, 2014; Accepted July 29, 2014; Published August 26, 2014 Received April 21, 2014; Accepted July 29, 2014; Published August 26, 2014 ng et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits tion, and reproduction in any medium, provided the original author and source are credited. Copyright:  2014 Liang et al. This is an open-access article distributed under the terms of the Creative Commons Attributi unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Data Availability: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files. Abstract Funding: This work was supported by National Basic Research Program of China (973 Program) (2012CB947600, 2013CB911600), the National Natural Science Foundation of China (31171137, 31271261, 61301251), the Program for New Century Excellent Talents in University by the Chinese Ministry of Education (NCET- 11-0990), the Program for the Top Young Talents by the Organization Department of the CPC Central Committee, the Collaborative Innovation Center for Cardiovascular Disease Translational Medicine (Nanjing Medical University), the China Postdoctoral Science Foundation funded project (No. 2012M521100), the National Natural Science Foundation of Jiangsu (No. BK20130885), the Natural Science Foundation of the Jiangsu Higher Education Institutions (No. 12KJB360001, 13KJB330003), the Jiangsu Planned Projects for Postdoctoral Research Funds (No. 1201022B), Shandong Provincial Key Laboratory of Functional Macromolecular Biophysics, and the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. * Email: lguo@njmu.edu.cn Competing Interests: The authors have declared that no competing interests exist. * Email: lguo@njmu.edu.cn Competing Interests: The authors have declared that no competing interests exist. * Email: lguo@njmu.edu.cn ends, and some are involved in 39 post-transcriptional additional non-template nucleotides [10–22]. These physiological miRNA isoforms, also termed miRNA variants or isomiRs, have been concerned in miRNA study. Some isomiRs can be differentially loaded into Argonautes [16,23], and isomiRs with 39 addition are less prone to be degraded [17]. These miRNA isoforms are mainly derived from imprecise and alternative cleavage through pre- miRNA processing, and 39 addition events [19]. Among these isomiRs, only several isomiRs are dominantly expressed despite multiple isomiRs can be detected [18,22,24,29]. and most of them are 39 isomiRs with the same 59 ends and seed sequences [18,24,25]. The result implicates the potential dominant cleavage or cleavage bias through pre-miRNA processing. IsomiR expres- sion patterns may be different across different miRNA loci, but they are always conserved in different samples, even across different tissues and animal species [18,26]. Homologous and clustered miRNAs are prone to detect consistent isomiR expres- sion profiles [27], although they may be differentially expressed with different expression levels [28–30]. Simultaneously, these sequence or location related miRNAs also have close evolutionary relationships and potential functional relationships [8,31–33]. ends, and some are involved in 39 post-transcriptional additional non-template nucleotides [10–22]. Abstract These physiological miRNA isoforms, also termed miRNA variants or isomiRs, have been concerned in miRNA study. Some isomiRs can be differentially loaded into Argonautes [16,23], and isomiRs with 39 addition are less prone to be degraded [17]. These miRNA isoforms are mainly derived from imprecise and alternative cleavage through pre- miRNA processing, and 39 addition events [19]. Among these isomiRs, only several isomiRs are dominantly expressed despite multiple isomiRs can be detected [18,22,24,29]. and most of them are 39 isomiRs with the same 59 ends and seed sequences [18,24,25]. The result implicates the potential dominant cleavage or cleavage bias through pre-miRNA processing. IsomiR expres- sion patterns may be different across different miRNA loci, but they are always conserved in different samples, even across different tissues and animal species [18,26]. Homologous and clustered miRNAs are prone to detect consistent isomiR expres- sion profiles [27], although they may be differentially expressed with different expression levels [28–30]. Simultaneously, these sequence or location related miRNAs also have close evolutionary relationships and potential functional relationships [8,31–33]. Tingming Liang1, JiaFeng Yu2, Chang Liu1, Li Guo3* 1 Jiangsu Key Laboratory for Molecular and Medical Biotechnology, College of Life Science, Nanjing Normal University, Nanjing, Jiangsu, China, 2 Shandong Provincial Key Laboratory of Functional Macromolecular Biophysics, Institute of Biophysics, Dezhou University, Dezhou, Shandong, China, 3 Department of Epidemiology and Biostatistics, School of Public Health, Nanjing Medical University, Nanjing, Jiangsu, China Competing Interests: The authors have declared that no competing interests exist. * Email: lguo@njmu.edu.cn Introduction MicroRNAs (miRNAs) are a class of non-coding RNAs (ncRNAs) with shorter size (,22 nucleotides). They are vital to many cell functions via repressing target mRNAs at the post- transcriptional level [1]. miRNAs are generated from primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs) through cleavage of Drosha and Dicer [2,3]. Typically, miRNA:- miRNA* duplex is yielded by pri-miRNA and pre-miRNAs via cleavage process. miRNA is an active regulatory molecule, while miRNA* is ever thought as an inactive degraded strand [4]. However, increasing evidence indicates that the ever called passenger strand may also be abundantly expressed and play a biological role as a negative regulatory molecule [5–9]. The small ncRNA regulates target mRNAs by miRNA:mRNA interaction through complementarily binding of ‘‘seed sequences’’ of miRNA and 39 untranslated region (39 UTR) of mRNA. miRNA is ever studied and predicted as a single sequence as well as annotated miRNA sequence in the miRBase database. However, recently, some studies have shown that miRNA locus can generate a series of sequence with heterogeneous 59 and/or 39 August 2014 | Volume 9 | Issue 8 | e106223 1 PLOS ONE | www.plosone.org The Relationships between Homologous/Clustered miRNAs Table 1. Sequencing datasets from the TCGA database are analyzed. Disease Source TN NT Total Breast cancer (BRCA) TCGA 683 87 770 Clear cell carcinoma (KIRC) TCGA 237 71 308 Colon and rectal adenocarcinoma (COAD, READ) TCGA 471 16 487 Stomach adenocarcinoma (STAD) TCGA 261 38 299 Lung adenocarcinoma (LUAD) TCGA 436 46 482 Uterine corpus endometrial carcinoma (UCEC) TCGA 383 21 404 Lung squamous cell carcinoma (LUSC) TCGA 331 45 376 Thyroid carcinoma (THCA) TCGA 507 59 566 Total 3,309 383 3,692 TN: Tumor, Matched Normal. NT: Normal, Matched Tumor. doi:10.1371/journal.pone.0106223.t001 Table 1. Sequencing datasets from the TCGA database are analyzed. TN: Tumor, Matched Normal. NT: Normal, Matched Tumor. doi:10.1371/journal.pone.0106223.t001 miRNA expression data were collected from small RNA sequencing data in The Cancer Genome Atlas (TCGA) pilot project which is established by the NCI and NHGRI (https:// tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm). Expression data of several specific miRNAs at the miRNA and isomiR levels, including miR-23a, miR-23b, miR-24, miR-27a and miR-27b, were further extracted using self-developed scripts. Small RNA sequencing data from eight human diseases and their normal tissues were analyzed in the study (Table 1). Evolutionary analysis Pre-miRNA and miRNA sequences in different animal species were firstly aligned using Clustal X 2.0 software [40], and nucleotide divergence was then estimated with MEGA 5.10 software [41] and DnaSP 5.10.01 software [42] as miRNA population [43]. Nucleotide diversity (p) and haplotype diversity (Hd) in each miRNA were calculated using DnaSP 5.10.01. miR- #-5p, the ever passenger strand, were reported and annotated in some species, and other miR-#-5p sequences were predicted based on hsa-miR-#-5p using pre-miRNA sequences. Because the difference of miRNA sequences were not always involved in varied nucleotides, they were mainly derived from length difference during miRNA processing and maturation processes. Therefore, nucleotide diversity and haplotype diversity were estimated using consensus sequences with human miRNA sequences, and the difference, particular the length difference, was avoided in analysis. Phylogenetic trees based on neighbor-net method [44] of miRNA genes (herein using pre-miRNA sequences) were recon- structed with SplitsTree 4.10 software [45] using Jukes-Cantor model. Further, evolutionary networks were reconstructed with Network 4.6.1.2 (http://www.fluxus-engineering.com/) using the median-joining (MJ) method. The parameter of the value of epsilon was set 10, and the generated MJ network was further optimized using Maximum Parsimony (MP) calculation. Introduction More miRNA gene clusters and families have been studied as potential biomarkers in diagnosis of human diseases, because they are believed as crucial regulator in multiple biological processes through contributing to the coding-non-coding RNA regulatory network. In the present study, we attempted to discuss the potential relationships of evolution, maturation, expression and function between homologous/clustered miRNAs. Simultaneously, based on these results, the study aimed to track miRNA or isomiR maturation process between homologous/clustered miRNA loci. A specific example of mir-23,24,27 gene cluster was typically selected in the study. Specifically, the cluster includes miR-23a gene cluster (including mir-23a, mir-27a and mir-24-2 genes) and miR-23b cluster (including mir-23b, mir-27b and mir-24-1 genes). In human, the two miRNA gene clusters are located on chromosome 19(2) and chromosome 9(+), respectively, and both of them are reported as crucial miRNAs with important biological roles [34–38]. Antisense miRNA gene of mir-24, mir-3074 gene, can be detected in human, mouse and rat. The three miRNA gene families (mir-23, mir-27 and mir-24 gene families) are involved in the two gene clusters, and a total of five miRNAs can be yielded from these miRNA loci (the two miRNA genes, mir-24-1 and mir- 24-2, can yield the same mature miR-24 sequence). Homologous miRNAs are located in different clusters, and these clustered miRNAs can be co-transcribed. Based on the homologous and/or clustered relationships and their important biological roles, the several related miRNAs are typically selected to perform the analysis to track miRNA or isomiR maturation process using evolutionary and expression analysis. The study can provide information for miRNA maturation, evolutionary, expression and functional relationships between sequence or location related miRNAs. Source data The pre-miRNAs, miRNA sequences and their annotations from different animal species were obtained from the miRBase database (Release 20.0, http://www.mirbase.org/) [39] (Figure S1). miRNA gene cluster was named based on close physical distances with mir-23a and mir-23b genes on the same chromo- some, respectively (,10 kb). Although mir-3074 gene is identified as an antisense gene of mir-24 in several species, it is not involved in the analysis (the two sense and antisense miRNAs are also believed as clustered miRNAs). August 2014 | Volume 9 | Issue 8 | e106223 The Relationships between Homologous/Clustered miRNAs The Relationships between Homologous/Clustered miRNAs Figure 1. Evolutionary taxa, related miRNA members and physical distance of gene cluster in different animal species. (A) The three miRNA gene families have been detected in vertebrates. Their members are prone to be clustered on specific genomic region. Blank in columnn of gene family indicates that the miRNA members are not detected or predicted; blank in columnn of gene cluster indicates that no location annotation based on the current database. (B) Distribution of the physical distance between clustered miRNAs (miR-23a cluster and miR-23b cluster). The label of ‘‘24 loses’’ indicates that miR-24 is not detected in the species. As a terminus miRNA gene in gene cluster, the loss of miR-24 will influence the physical distance of the miRNA gene cluster. doi:10.1371/journal.pone.0106223.g001 Figure 1. Evolutionary taxa, related miRNA members and physical distance of gene cluster in different animal species. (A) The three miRNA gene families have been detected in vertebrates. Their members are prone to be clustered on specific genomic region. Blank in columnn of gene family indicates that the miRNA members are not detected or predicted; blank in columnn of gene cluster indicates that no location annotation based on the current database. (B) Distribution of the physical distance between clustered miRNAs (miR-23a cluster and miR-23b cluster). The label of ‘‘24 loses’’ indicates that miR-24 is not detected in the species. As a terminus miRNA gene in gene cluster, the loss of miR-24 will influence the physical distance of the miRNA gene cluster. doi:10.1371/journal.pone.0106223.g001 statistically significant. In the study, all tests were conducted in Stata software (Version 11.0). collected miRNA datasets from the TCGA (https://tcga-data.nci. nih.gov/tcga/dataAccessMatrix.htm). To find the potential functional relationships, predicted target mRNAs of these related miRNA gene families were obtained from the TargetScan program (http://www.targetscan.org/) (the cutoff of total context score was # 20.30) [46], and they were further queried for Gene Ontology Enrichment categories using the CapitalBio Molecule Annotation System V4.0 (MAS, http:// bioinfo.capitalbio.com/mas3/). Herein, the target mRNAs were predicted based on miRNA gene families, including homologous miRNAs and multiple isomiRs with the same seed sequences, and the main reason was that seed sequence of miRNA was the most crucial in miRNA-mRNA interaction. Overview of the several related miRNAs mir-23, mir-27 and mir-24 gene families were mainly found in vertebrates (Figure 1A). According to the current database, they had been detected or predicted in most vertebrates. Numbers of homologous miRNA members might be diverse across different animal species, and the difference was mainly derived from multicopy pre-miRNAs, additional homologous miRNAs or deletion of members (Figure 1A). Compared to other vertebrates, fishes (Pisces) were prone to detect more homologous miRNAs in the three gene families (such as multiple pre-miRNAs for miR-23a and miR-24), and novel homologous miRNAs (such as miR-27c, 27d, 27e and 24b). miRNAs in the three gene families were always clustered on specific genomic region (Figure 1). Based on the close physical distance (,10 kb), miR-23a/miR-27a/miR-24 and miR- 23b/miR-27b/miR-24 were composed of miRNA gene clusters. Interestingly, we found that the physical distances of the two miRNA gene clusters had significant difference (t = 23.4875, P = 0.003) (Figure 1B). In fishes, the distances were enlarged as well as more homologous miRNA members (Figure 1B). Expression and function analysis The small RNA sequencing datasets in tumor and normal tissues were obtained from the TCGA (https://tcga-data.nci.nih. gov/tcga/dataAccessMatrix.htm) (Table 1). Based on relative expression rate, isomiR expression patterns in the miRNA locus were estimated using collected isomiR datasets from the TCGA (https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm). The expression patterns at the miRNA levels were assessed using August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 2 Similar evolutionary patterns Generally, although there were 6 miRNA genes in mir- 23,24,27 gene cluster, only 5 miRNAs were generated because multicopy pre-miRNAs for miR-24. The ever typical miRNAs were miR-#-3p, and all of them were well-conserved phyloge- netically in vertebrates (Figure S1). Each miRNA had the same 59 ends and ‘‘seed sequences’’ (nucleotides 2–8) across different animal species, and many species shared the common miRNA sequence based on the annotated miRNA sequences. Rare sequences were involved in varied nucleotides, and rare varied nucleotides were always detected in 39 ends (Figure S1). Most different miRNA sequences were only detected difference in length distributions (various 39 ends). The similar results could be detected between homologous miRNAs. Homologous miRNAs (such as miR-23a and miR-23, miR-27a and miR-27b) could be detected the common core sequence (more than 15 nucleotides) (Figure S1). Statistical analysis The relative expression rates of isomiRs were described using x 6 sd (mean 6 standard deviation), and the expression levels of miRNAs were described using x 6 se (mean 6 standard error) (because the expression of miRNAs were assessed using the original sequence counts). The difference between physical distance of miR-23a and miR-23b clusters was estimated using paired t-test. A t-test was used to estimate the difference between isomiR expression profiles from tumor and normal samples using all the isomiRs and the most dominant isomiR, respectively. If the P value is less than 0.05, and differences were considered August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 3 The Relationships between Homologous/Clustered miRNAs Figure 2. Expression patterns at the miRNA/isomiR levels. Expression patterns of miRNAs are presented here at the miRNA/isomiR levels in the 8 tumor samples and their normal samples. (A) expression of miR-23a and miR-23b at the isomiR levels; (B) expression of miR-27a and miR-27b at the isomiR levels; (C) expression of miR-24 at the isomiR levels; (D) expression of the five miRNAs at the miRNA levels. doi:10.1371/journal.pone.0106223.g002 Figure 2. Expression patterns at the miRNA/isomiR levels. Expression patterns of miRNAs are presented here at the miRNA/isomiR levels in the 8 tumor samples and their normal samples. (A) expression of miR-23a and miR-23b at the isomiR levels; (B) expression of miR-27a and miR-27b at the isomiR levels; (C) expression of miR-24 at the isomiR levels; (D) expression of the five miRNAs at the miRNA levels. doi:10.1371/journal.pone.0106223.g002 August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 4 The Relationships between Homologous/Clustered miRNAs The Relationships between Homologous/Clustered miRNAs across different species (Table S2). For those multicopy pre- miRNAs, although they could yield the same miRNAs, they might be involved in varied nucleotides, including insertions/deletions, especially in the loop sequences. Evolutionary networks of miRNAs showed that miR-#-5p and miR-#-3p had different evolutionary patterns, and miR-#-5p sequences were prone to be involved in complex networks with more median vectors (Figure S2). Larger genetic distances could be detected between miR-#-5p sequences, although miR-#-3p sequences were highly conserved across different animal species. Phylogenetic trees of pre-miRNAs also showed various patterns, although miRNA genes were homologous or clustered together (Figure S3). Similar evolutionary patterns Expression patterns and functional enrichment analysis Using public small RNA sequencing datasets, we found that some of these related miRNAs showed similar isomiR expression, although rates of dominant isomiRs were diverse (Figure 2). Among of these related miRNAs, we found that most of miRNA loci only yielded a kind of quite dominant isomiR, while miR-27a locus was detected two dominant isomiRs with similar expression (Figure 2). IsomiR expression patterns were always stable across different tumor/normal samples, but some miRNAs showed inconsistent expression. For example, isomiRs from miR-27a Simultaneously, another strand and loop sequence were also analyzed. Although the another strand was also well-conserved across vertebrates, they have high nucleotide diversity and haplotype diversity due to involved more varied nucleotides (Table S2). Compared to miR-#-5p and miR-#-3p sequences, the middle sequences, also termed loop sequences, were not conserved Figure 3. The top 5 gene categories based on target mRNAs of related miRNAs. The top 5 gene categories, including biological process, cellular component and molecular function, are presented according to target mRNAs of (A) miR-23ab, (B) miR-24, (C) miR-27ab and (D) the common target mRNAs of the three miRNA gene families. doi:10.1371/journal.pone.0106223.g003 Moreover, the phenomenon of multicopy pre-miRNAs or multiple homologous miRNAs are prone to detect in fishes according to analysis of other miRNAs, which may be derived from genome duplication [51]. The duplication event further complicates the miRNA world and the coding-non-coding RNA regulatory network. indicated ‘‘switching’’ between the two dominant isomiRs across different samples (Figure 2B). However, similar phenomenon was not detected in isomiRs from miR-27b, although it was homologous miRNA with miR-27a. Compared to relative stable isomiR expression patterns, these related miRNAs may show diverse expression levels across different tumor/normal samples, but the similar expression tendency could be detected between the same tissues (including tumor and normal samples, unless the miRNA was abnormally expressed in tumor samples). No significant difference of isomiR expression could be detected between tumor and normal samples (P.0.05, Table S1). However, based on the most dominant isomiR, miR-23a and miR-24 showed inconsistent expression (miR-23a, P,0.0001; miR-24, P,0.01, Table S1). These related miRNAs also showed similar expression between tumor and normal samples based on the dominant isomiR (P.0.05, Table S2). Gene categories of the three related miRNA gene families showed similar distributions with the same most significantly enriched categories (Figure 3 and Table S3). Although they had different seed sequences and target mRNAs, these related miRNAs contributed to the same or similar biological process, cellular component and molecular function (Figure 3 and Table S3). Further KEGG pathway enrichment analysis also showed similar enriched pathways between the three miRNA families (Figure S4 and Table S3). Although the three gene families had different seed sequences, the common target mRNAs were also collected and analyzed. The main reason may be derived from different binding regions in the same target mRNA. Expression patterns at the miRNA and isomiR levels of these related miRNAs are further analyzed in different tumor samples using public small RNA datasets. For a specific miRNA locus, similar isomiR expression patterns indicate the stable miRNA maturation and processing mechanisms (Table S1). Although sequence or physical related miRNA loci are prone to show similar isomiR expression profiles [29], miR-27a show specific expression patterns with the two similar dominant isomiRs (Table S1, Table S2 and Figure 3). The two isomiRs can be switched in different samples, which suggests that the potential switching phenomenon in isomiR expression profiles. Figure 3. The top 5 gene categories based on target mRNAs of related miRNAs. The top 5 gene categories, including biological process, cellular component and molecular function, are presented according to target mRNAs of (A) miR-23ab, (B) miR-24, (C) miR-27ab and (D) the common target mRNAs of the three miRNA gene families. doi:10.1371/journal.pone.0106223.g003 August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 5 The Relationships between Homologous/Clustered miRNAs Table 2. Nucleotide diversity (p) and haplotype diversity (Hd) of miRNA populations. Table 2. Nucleotide diversity (p) and haplotype diversity (Hd) of miRNA populations. miRNA miR-#-3p (dominant) Loop sequences miR-#-5p p Hd p Hd p Hd miR-23a 0.00260.002 0.04760.044 0.61860.030 0.93960.018 0.15760.008 0.69560.051 miR-23b 0.00360.003 0.07160.065 0.12660.033 0.70660.090 0.04160.011 0.53760.109 miR-23 0.02560.002 0.50160.028 miR-27a 0.00460.003 0.07460.067 0.38160.058 0.92360.038 0.11660.029 0.56160.114 miR-27b 0.00460.004 0.08360.075 0.23060.046 0.85960.052 0.04160.027 0.23960.113 miR-27 0.41460.013 0.54760.030 miR-24 0.00260.002 0.03760.035 0.46460.028 0.90860.028 0.13060.016 0.76060.039 The consensus sequences were estimated based on human miRNA or loop sequences. miR-23, including miR-23a and miR-23b, was estimated p and Hd based on the dominant miRNA sequences (the loop sequences and another strands would be involved in larger levels of nucleotide divergence). doi:10.1371/journal.pone.0106223.t002 The consensus sequences were estimated based on human miRNA or loop sequences. miR-23, including miR-23a and miR-23b, was estimated p and Hd based on the dominant miRNA sequences (the loop sequences and another strands would be involved in larger levels of nucleotide divergence). doi:10.1371/journal.pone.0106223.t002 pre-miRNAs, particularly in loop and non-dominant miRNA sequences in fishes (Table 2 and Figure S3). In fishes (Pisces), both miR-23a/b and miR-24 have been detected multicopy pre- miRNAs, while miR-27 are prone to detect homologous members. The interesting results implicate that the three miRNA gene families may be further duplicated and extended in fishes with various levels of nucleotide divergence as well as larger physical distances. Simultaneously, miR-23a/b and miR-24 sequences are well-conserved, and the duplicated miRNA genes are rarely involved in varied nucleotides in miRNAs. However, duplicated miR-27 genes are involved in varied nucleotides in miRNA regions, which therefore leads to homologous miRNA members with higher sequence similarity (miR-27a/b/c/d/e). In contrast to the well-conserved miR-23 and miR-24 gene families, the rapid evolution process of miR-27 family may imply the potential functional and evolutionary pressures in fishes. Switching events have been found in expression or changes of ratio between the two arms of miR-#-5p and miR-#-3p, and herein we also call switching event in the dynamic selection of dominant isomiR. Indeed, the two isomiRs have the same 59 ends and seed sequences, and they only diverge in 39 end (Figure 1). The interesting switching event in selection of dominant isomiRs supports that multiple isomiRs provide the opportunity to select the most appropriate dominant isomiR [25]. Although most isomiRs from an miRNA locus have the same seed sequences and targets, the divergence of length and 39 ends may also play unclear roles in the miRNA world as well as homologous miRNAs and various miRNA sequences in different animal species. As homologous miRNAs, such as miR-23a/23b and miR- 27a/27b, they are prone to have the same seed sequences and Discussion The three miRNA gene families have been widely studied, especially as potential biomarker in human diseases [47–50]. They are prone to locate in gene cluster with close physical distance on chromosomes, and the similar miRNA members and distance distributions can be found in most vertebrates (Figure 1). The related members in the three miRNA gene families show similar evolutionary patterns, although they also indicate a slight difference (Table S2, Figures S1, S2 and S3). Specifically, mir-24 genes are not evolved the two homologous miRNAs as well as mir- 23 and mir-24 genes, despite the two multicopy pre-miRNAs of miR-24 can also be detected in most vertebrates (except for fishes, Table 2 and Figure 1). Phylogenetic trees using pre-miRNAs show diverse patterns, which is mainly derived from nucleotide divergence between homologous miRNA genes and multicopy August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 6 The Relationships between Homologous/Clustered miRNAs family. (C) Evolutionary network of miR-24-5p. Each miRNA (including miR-#-5p and miR-#-3p) was reconstructed the evolutionary network. miR-23a-3p, miR-27a-3p and miR-24-3p could not be reconstructed due to conserved sequences (less than 3 different sequences). However, networks of miR-23-3p (including miR-23a-3p and miR-23b-3p) and miR-27-3p (including miR- 27a-3p and miR-27b-3p) were reconstructed. The size of the circle indicates that the miRNA sequence is shared by the number of species. The purple circle indicates miR-#-3p, the yellow circle indicates miR-#-5p, and the red circle indicates the mediate vector that is hypothesized miRNA sequence. target mRNAs, although they have different sequence with varied nucleotides. Simultaneously, some miRNA sequences in different animal species may be involved in heterogeneous sequences with varied nucleotides or lengths, although most of them are well- conserved, particularly in the seed sequences. However, we poorly understand the potential effects of diverged nucleotides in other positions (except for seed sequences) and length distributions in miRNA/isomiR in the evolutionary and functional miRNA studies. Functional analysis indicate that the three related miRNA gene families contribute to similar biological pathways, despite they have different seed sequences and predicted target mRNAs (Figures 3, S4 and Table S3). The surprising similar functions implicate direct or indirect coordinate regulation patterns between these sequence or location related miRNAs. In vivo, these miRNAs may show diverse expression patterns [27–30], and a major reason may be regulated expression as candidate small RNA regulatory molecules. The dynamic expression of related miRNAs may flexible adapt to functional need. References 1. Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281–297. and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 11: 52. 1. Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281–297. 10. Li JJ, Yang ZY, Yu B, Liu J, Chen XM (2005) Methylation protects miRNAs and siRNAs from a 39-end uridylation activity in Arabildopsis. Current Biology 15: 1501–1507. 2. Morlando M, Ballarino M, Gromak N, Pagano F, Bozzoni I, et al. (2008) Primary microRNA transcripts are processed co-transcriptionally. Nature Structural & Molecular Biology 15: 902–909. gy 3. Ghildiyal M, Zamore PD (2009) Small silencing RNAs: an expanding universe. Nature Reviews Genetics 10: 94–108. 11. Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401–1414. 4. Winter J, Jung S, Keller S, Gregory RI, Diederichs S (2009) Many roads to maturity: microRNA biogenesis pathways and their regulation. Nature Cell Biology 11: 228–234. 12. Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, et al. (2007) Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Research 17: 1850–1864. 5. Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA star species has substantial influence on microRNA and 3 ’ UTR evolution. Nature Structural & Molecular Biology 15: 354–363. 13. Azuma-Mukai A, Oguri H, Mituyama T, Qian ZR, Asai K, et al. (2008) Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing. Proceedings of the National Academy of Sciences of the United States of America 105: 7964–7969. 6. Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, et al. (2009) Hierarchical rules for Argonaute loading in Drosophila. Mol Cell 36: 445–456. 14. Morin RD, O’Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research 18: 610–621. 7. Okamura K, Liu N, Lai EC (2009) Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol Cell 36: 431–444. 15. Reid JG, Nagaraja AK, Lynn FC, Drabek RB, Muzny DM, et al. (2008) Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 59-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a: mRNA duplexes. Genome Research 18: 1571–1581. 8. Supporting Information Figure S1 The five related miRNAs are well-conserved in vertebrates. All of them are only involved in difference in 39 ends, and less are detected varied nucleotides. Homologous miRNAs are also detected the common core sequences. Author Contributions Conceived and designed the experiments: LG TML CL. Performed the experiments: TML LG. Analyzed the data: LG TML JFY CL. Contributed reagents/materials/analysis tools: TML JFY. Contributed to the writing of the manuscript: LG TML. Figure S2 Evolutionary networks of miRNAs. (A) Evolu- tionary networks of miRNA members in miR-23 gene family. (B) Evolutionary networks of miRNA members in miR-27 gene Figure S2 Evolutionary networks of miRNAs. (A) Evolu- tionary networks of miRNA members in miR-23 gene family. (B) Evolutionary networks of miRNA members in miR-27 gene Discussion Figure S3 Phylogenetic trees of miRNA genes. (A) Phylogenetic trees of homologous mir-23a and mir-23b. (B) Phylogenetic trees of homologous mir-27a and mir-27b. (C) Phylogenetic tree of mir-24. (PPT) Figure S4 The top 20 most enriched KEGG pathways of target mRNAs of related miRNAs. KEGG pathways of (A) miR-23ab, (B) miR-24 and (C) miR-27ab are presented here according to target mRNAs. (D) indicates the top 20 most enriched KEGG pathways of the common target mRNAs of the three miRNA gene families. Taken together, the study using mir,23,27,24 provides more evolution, maturation, expression and function relationships between homologous/cluster miRNAs. Similar evolutionary pat- terns, miRNA maturation and processing processes and functional relationships implicate the ‘‘functional groups’’ of miRNAs/ isomiRs in regulatory networks. Simultaneously, the close sequence and location relationships also provide the opportunity to direct or indirect coordinate regulatory pattern between different miRNAs. These results are also adaptable to other related homologous or clustered miRNAs, and these evolutionary, expression and functional relationships will further enrich miRNA studies and understand direct or indirect interactions between miRNAs. Table S1 The statistical analysis of related miRNAs between tumor and normal samples. (DOC) Table S2 The statistical analysis of miRNAs based on the most dominant isomiR. (DOC) Table S3 Functional enrichment results based on human miRNAs. The Relationships between Homologous/Clustered miRNAs The Relationships between Homologous/Clustered miRNAs The Relationships between Homologous/Clustered miRNAs 16. Ebhardt HA, Tsang HH, Dai DC, Liu YF, Bostan B, et al. (2009) Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Research 37: 2461–2470. 34. Li X, Liu X, Xu W, Zhou P, Gao P, et al. (2013) c-MYC-regulated miR-23a/24- 2/27a cluster promotes mammary carcinoma cell invasion and hepatic metastasis by targeting Sprouty2. J Biol Chem 288: 18121–18133. y g g p y J 35. Wang F, Zhu Y, Guo L, Dong L, Liu H, et al. (2014) A regulatory circuit comprising GATA1/2 switch and microRNA-27a/24 promotes erythropoiesis. Nucleic Acids Res 42: 442–457. 17. Lu SF, Sun YH, Chiang VL (2009) Adenylation of plant miRNAs. Nucleic Acids Research 37: 1878–1885. 18. Guo L, Yang Q, Lu J, Li H, Ge Q, et al. (2011) A Comprehensive Survey of miRNA Repertoire and 39 Addition Events in the Placentas of Patients with Pre- eclampsia from High-throughput Sequencing. PLoS ONE 6: e21072. 36. Jin L, Wessely O, Marcusson EG, Ivan C, Calin GA, et al. (2013) Prooncogenic factors miR-23b and miR-27b are regulated by Her2/Neu, EGF, and TNF- alpha in breast cancer. Cancer Res 73: 2884–2896. p eclampsia from High-throughput Sequencing. PLoS ONE 6: e21 19. Neilsen CT, Goodall GJ, Bracken CP (2012) IsomiRs - the overlooked repertoire in the dynamic microRNAome. Trends Genet 28: 544–549. p 37. Zhou Q, Gallagher R, Ufret-Vincenty R, Li X, Olson EN, et al. (2011) Regulation of angiogenesis and choroidal neovascularization by members of microRNA-23,27,24 clusters. Proc Natl Acad Sci U S A 108: 8287–8292. in the dynamic microRNAome. Trends Genet 28: 544–549. 20. Lee LW, Zhang S, Etheridge A, Ma L, Martin D, et al. (2010) Complexity of the microRNA repertoire revealed by next generation sequencing. Rna-a Publica- tion of the Rna Society 16: 2170–2180. 38. Sun T, Yang M, Chen S, Balk S, Pomerantz M, et al. (2012) The altered expression of MiR-221/-222 and MiR-23b/-27b is associated with the development of human castration resistant prostate cancer. Prostate 72: 1093– 1103. y 21. Fernandez-Valverde SL, Taft RJ, Mattick JS (2010) Dynamic isomiR regulation in Drosophila development. Rna-a Publication of the Rna Society 16: 1881– 1888. 22. Guo L, Chen F (2014) A Challenge for miRNA: Multiple IsomiRs in miRNAomics. Gene 544: 1–7. 39. Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152–D157. 23. The Relationships between Homologous/Clustered miRNAs Seitz H, Ghildiyal M, Zamore PD (2008) Argonaute loading improves the 59 precision of both MicroRNAs and their miRNA* strands in flies. Current Biology 18: 147–151. p q g 40. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and clustal X version 2.0. Bioinformatics 23: 2947–2948. Clustal W and clustal X version 2.0. Bioinformatics 23: 2947–294 41. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolution- ary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739. gy 24. Guo L, Li H, Lu J, Yang Q, Ge Q, et al. (2012) Tracking miRNA precursor metabolic products and processing sites through completely analyzing high- throughput sequencing data. Mol Biol Rep 39: 2031–2038. y p y 42. Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451–1452. g p q g p 25. Guo L, Chen F, Lu Z (2013) Multiple IsomiRs and Diversity of miRNA Sequences Unveil Evolutionary Roles and Functional Relationships Across Animals. MicroRNA and Non-Coding RNA: Technology, Developments and Applications. 127–144. 43. Guo L, Sun BL, Sang F, Wang W, Lu ZH (2009) Haplotype Distribution and Evolutionary Pattern of miR-17 and miR-124 Families Based on Population Analysis. PLoS ONE 4: e7944. y 44. Bryant D, Moulton V (2004) Neighbor-Net: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21: 255–265. pp 26. Burroughs AM, Ando Y, de Hoon MJL, Tomaru Y, Nishibu T, et al. (2010) A comprehensive survey of 39 animal miRNA modification events and a possible role for 39 adenylation in modulating miRNA targeting effectiveness. Genome Research 20: 1398–1410. 45. Huson DH (1998) SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68–73. 27. Guo L, Li H, Liang T, Lu J, Yang Q, et al. (2012) Consistent isomiR expression patterns and 39 addition events in miRNA gene clusters and families implicate functional and evolutionary relationships. Mol Biol Rep 39: 6699–6706. 46. Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB (2003) Prediction of mammalian microRNA targets. Cell 115: 787–798. 47. Chen Q, Xu J, Li L, Li H, Mao S, et al. (2014) MicroRNA-23a/b and microRNA-27a/b suppress Apaf-1 protein and alleviate hypoxia-induced neuronal apoptosis. Cell Death Dis 5: e1132. 28. Yu J, Wang F, Yang GH, Wang FL, Ma YN, et al. References Guo L, Lu Z (2010) The Fate of miRNA* Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule? Plos One 5: e11387. 9. Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang HB, Arrese EL, et al. (2010) Deep sequencing of small RNA libraries reveals dynamic regulation of conserved August 2014 | Volume 9 | Issue 8 | e106223 August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 7 The Relationships between Homologous/Clustered miRNAs (2006) Human microRNA clusters: Genomic organization and expression profile in leukemia cell lines. Biochemical and Biophysical Research Communications 349: 59–68. p p 48. Zhang Q, Guo XK, Gao L, Huang C, Li N, et al. (2014) MicroRNA-23 inhibits PRRSV replication by directly targeting PRRSV RNA and possibly by upregulating type I interferons. Virology 450–451: 182–195. 29. Guo L, Lu Z (2010) Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data. Computational Biology and Chemistry 34: 165–171. y 30. Viswanathan SR, Mermel CH, Lu J, Lu CW, Golub TR, et al. (2009) microRNA Expression during Trophectoderm Specification. Plos One 4: e6143. 49. Lin ST, Huang Y, Zhang L, Heng MY, Ptacek LJ, et al. (2013) MicroRNA-23a promotes myelination in the central nervous system. Proc Natl Acad Sci U S A 110: 17468–17473. 31. Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, et al. (2006) The expansion of the metazoan microRNA repertoire. Bmc Genomics 7: 25. 50. Hassan MQ, Gordon JA, Beloti MM, Croce CM, van Wijnen AJ, et al. (2010) A network connecting Runx2, SATB2, and the miR-23a,27a,24-2 cluster regulates the osteoblast differentiation program. Proc Natl Acad Sci U S A 107: 19879–19884. 32. Sempere LF, Cole CN, McPeek MA, Peterson KJ (2006) The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol 306: 575–588. 51. Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, et al. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946–957. p 33. Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, et al. (2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193–1197. August 2014 | Volume 9 | Issue 8 | e106223 PLOS ONE | www.plosone.org 8
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Behaviour of reinforcement in drop tower beam tests
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Behaviour of reinforcement in drop tower beam tests Lena Leicht1,*, Franz Bracklow1, Marcus Hering1, and Manfred Curbach1 1 Technische Universität Dresden, Institute of Concrete Structures, Germany Lena Leicht1,*, Franz Bracklow1, Marcus Hering1, and Manfred Curbach1 1 Technische Universität Dresden, Institute of Concrete Structures, Germany Abstract. Drop tower tests help to gain understanding about the general behaviour of reinforced concrete members under impact loading and to analyse strains and strain rates occurring within their reinforcement. For this purpose, beam and slab specimens are usually employed. The main advantage of beams compared to slabs is that they are less complex due to the almost two-dimensional instead of three-dimensional wave propagation within them. To investigate the steel strains and strain rates, ten impact tests on beam specimens with various impact energies were performed. The impactor sizes and velocities were varied. The reinforcement bars of the beams were instrumented with semiconductor strain gauges. The measured data suggest that the occurring strains in beam tests are independent of the loading velocity. The same was found for the strain rates. The reason is that higher impact energies mostly influence the concrete damage due to spalling on the impact-facing side which happens after the maximum strains occurred. The strains in the reinforcement bars generally result from the overall deflection because of the impact, the spreading of longitudinal waves in the horizontal direction, and the localized cracking of the concrete due to the formation of a punching cone. * Corresponding author: lena.leicht@tu-dresden.de https://doi.org/10.1051/matecconf/202032301007 https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). y EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4. icenses/by/4.0/). 1 Impact tests on concrete beams Many researchers conducted beam tests on multiple different testing facilities. Some carried out pendulum tests where the specimens, rotated along the longitudinal axis and mounted to a special support plate, were hit by a pendulous mass of up to 50 kg, e.g. Máca et al. [1]. Other researchers like Fujikake and colleagues [2, 3, 4] carried out tests in servo-controlled rapid loading machines. After an initial acceleration period, these machines applied a constant loading velocity to the RC beams. Some specimens were additionally reinforced by stirrup reinforcement with varying spacing. The result was a relatively fine crack pattern redounding in diagonal tension failure, shear compression failure or flexural failure. The results of the strain gauge measurements taken on the longitudinal reinforcement as well as the stirrups that are mentioned in [2] were neither shown nor compared to the impact velocity. The impact tests reported in this paper were carried out in the drop tower of the Otto Mohr Laboratory at TU Dresden [5]. The beams were simply supported by two rollers and minimally held down by unprestressed bolts and a transverse steel girder. The impactor hit the specimen after sliding through a steel pipe with a length of about 11 m. Compressed https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) air accelerated the impactor in addition to the fall energy. The final velocity of the impactor was derived from the signals of two light barriers at the end of the pipe. Thus, the loading conditions of the tests presented in [2, 3, 4] differed strongly from the loading in this study. Here, a hard and short impact [6] was applied to the beams, whereas in [2, 3, 4] a slower and constant velocity impact strained the specimens. y p p There are three main effects resulting from the impact loading that lead to steel strains over the whole length of the reinforcement bar. The first effect is the bending of the beam due to the impact force. Apart from that, shear and longitudinal waves start propagating within the beam after the impact. The longitudinal waves are the most relevant ones as for this type of wave, the direction of the wave propagation is equal to the direction of particle movement leading to stresses and strains within the specimen and thus over the length of the reinforcement bar. 1 Impact tests on concrete beams These waves do not only travel vertically but also spread in the horizontal direction [7]. The vertically travelling part of the longitudinal waves is reflected as a tensile wave at the free bottom surface of the beam. The combination of high shear forces due to the locally acting impact force and the reflected wave is responsible for the typical cone failure of the beams. This combined shear and scabbing failure mode leads to strain concentrations within the steel in the region where the inclined cracks of the typical punching cone open. Therefore, the formation of the punching cone is the third reason for strains in the reinforcement. This study aims to analyse the cracking process and to investigate the influence of the impactor energy on the steel strains and resulting strain rates in drop tower beam tests with high loading velocities and low impactor masses. 2.1 Geometry of the girders and measurement The tested beams were 1,450 mm long, 280 mm high and 130 mm wide. The diameter of the longitudinal reinforcement was 8 mm and the beams were not additionally reinforced by stirrup reinforcement to guarantee comparativeness to the impact tests on plates carried out at TU Dresden [8, 9, 10]. The bottom layer consisted of three reinforcement bars, while only two reinforcement bars formed the upper layer. These were held in place by transport handles. The concrete cover of the lower reinforcement layer was 10 mm. This layer was instrumented with one semiconductor strain gauge (SG) in the middle of each of the three reinforcement bars. While the two outer bars were completely bonded to the surrounding concrete, the middle of the inner reinforcement bar was unbonded over a length of 100 mm. The concrete strength was tested after 28 days on four cylinders, the individual values were 49.3 MPa, 51.7 MPa, 51.9 MPa, and 54.5 MPa, respectively. The modulus of elasticity ranged between 33,800 MPa and 37,300 MPa. 3.1 Impact energy The impact energy is a good criterion to compare different tests because it takes the impactor velocity as well as its weight into account. The only element which cannot be taken into account in the energy-based analysis is the wave length of the impact wave which depends on the length of the impactor. As wave propagation cannot really be studied with three strain gages at the same position regarding the length of the beam, this is not considered a disadvantage. The impact energy is defined as the kinetic energy of the impactor calculated from its mass and its velocity. EImp = 0.5 ∙ mI ∙ vI2 (1) (1) where: Eimp – impact energy mI – impactor mass vI – impactor velocity where: Eimp – impact energy mI – impactor mass vI – impactor velocity 2.2 Impactor geometry and speed Two impactors with different lengths–380 mm and 250 mm–and thus different weights were used. The impactors had a diameter of 100 mm and were made of steel. Their hitting surface was flat. An overview of the experiments carried out with the different impactors and varying loading pressures can be seen in Tab. 1. Per configuration, one beam was tested. The names of the specimens consist of the impactor length in millimetre and the loading pressure in bar. 2 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) https://doi.org/10.1051/matecconf/202032301007 Table 1. Experimental matrix. Loading pressure [bar] 0 0.2 0.4 0.6 0.8 1.0 Impactor length [mm] 380 B380_0.0 B380_0.2 B380_0.4 B380_0.6 B380_0.8 B380_1.0 250 B250_0.0 B250_0.2 B250_0.4 B250_0.6 - - 3.2 General behaviour of the beams a) B380_0.0 (tested at 0 bar with the resulting impactor velocity of 13.4 m/s) b) B380_0.4 (tested at 0.4 bar with the resulting impactor velocity of 19.8 m/s) a) B380_0.0 (tested at 0 bar with the resulting impactor velocity of 13.4 m/s) b) B380_0.4 (tested at 0.4 bar with the resulting impactor velocity of 19.8 m/s) Fig. 1. Punching cones for different loading velocities after impact with the 380 mm long impactor ( i ht 21 66 k ) (tested at 0.4 bar with the resulting impactor velocity of 19 b) B380_0.4 (tested at 0.4 bar with the resulting impactor velocity of 19.8 m/s) Fig. 1. Punching cones for different loading velocities after impact with the 380 mm long impactor (weight: 21.66 kg) a) B250_0.0 (tested at 0 bar with the resulting impactor velocity of 12.4 m/s) b) B250_0.4 (tested at 0.4 bar with the resulting impactor velocity of 22.5 m/s) Fig. 2. Punching cones for different loading velocities after impact with the 250 mm long impactor (weight: 14.22 kg) By contrast, the time it took for the wave to pass through the beam in the vertical direction can be estimated to only 0.07 ms (see eq. 2 [6, 11]). After these 0.07 ms, the compressive wave was reflected as a tensile wave from the free bottom surface of the beam. As the initial wave travelled about four times through the cross section as a tensile and compressive pulse a) B250_0.0 (tested at 0 bar with the resulting impactor velocity of 12.4 m/s) b) B250_0.4 (tested at 0.4 bar with the resulting impactor velocity of 22.5 m/s) a) B250_0.0 (tested at 0 bar with the resulting impactor velocity of 12.4 m/s) b) B250_0.4 (tested at 0.4 bar with the resulting impactor velocity of 22.5 m/s) Fig. 2. Punching cones for different loading velocities after impact with the 250 mm long impactor b) B250_0.4 (tested at 0.4 bar with the resulting impactor velocity of 22.5 m/s) b) B250_0.4 (tested at 0.4 bar with the resulting impactor velocity of 22.5 m/s) Fig. 2. Punching cones for different loading velocities after impact with the 250 mm long impactor (weight: 14.22 kg) Fig. 2. 3.2 General behaviour of the beams The overall failure mode of all tested beams was the typical formation of a punching cone (see. Fig. 1 and 2) which differed strongly from the failure modes reported in [2, 3, 4], where cracks more distributed than in the present study were observed, which led to a more ductile failure. Regarding the influence on the stress in the lower reinforcement layer, the beam can be split in three different areas after the impact, which can be seen in Fig. 1 a). No. 1 is the mentioned punching cone which can be as high as the beam or lower. Area number 2 is characterized by the spalling off of the concrete cover due to the untying of the cone from the rest of the beam. Lastly, area 3 is marked by the end anchorage of the reinforcement bars, which is uncritical for small cones which guarantee large anchorage lengths but can become critical for large cones with small anchorage lengths. However, predicting the width of the punching cone is not possible as it does not clearly depend on the loading velocity. On top of that, the cones sometimes were asymmetric, especially for small loading pressures, see Fig. 1 a) and 2 a). The cracking process during the impact was evaluated with the help of high speed camera videos that recorded at the rate of 10,000 frames/s. For almost all beams, cracking initiated with the bending crack in the middle of the beam. These cracks, which became about half as long as the beam’s height, usually arose between 0.2 ms and 0.3 ms after the impact (e.g. B380_0.0, B380_0.2, B250_0.0, B250_0.4, and B250_0.6). Thereafter started the formation of the punching cone. There were tests where the formation of the cone started with inclined cracks from underneath the beam (e.g. B380_0.0, B380_0.4, and B250_0.0). In these 3 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) https://doi.org/10.1051/matecconf/202032301007 specimens, the cone started to form from 0.4 ms to 0.6 ms after the impact. In the instances where the cracks of the punching cone were completely visible from one camera frame to the next, the cracks already formed from 0.3 ms to 0.4 ms after the impact (e.g. B380_0.2, B250_0.4, and B250_0.6). After the cone was separated from the rest of the cross section, it was accelerated leading to the spalling off of the concrete cover in area 2. 3.2 General behaviour of the beams Punching cones for different loading velocities after impact with the 250 mm long impactor (weight: 14.22 kg) By contrast, the time it took for the wave to pass through the beam in the vertical direction can be estimated to only 0.07 ms (see eq. 2 [6, 11]). After these 0.07 ms, the compressive wave was reflected as a tensile wave from the free bottom surface of the beam. As the initial wave travelled about four times through the cross section as a tensile and compressive pulse 4 4 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) https://doi.org/10.1051/matecconf/202032301007 until the inclined cracking of the punching cone initiated, the waves interfered strongly in the area where the cracking occurs. This not only affected the waves travelling through the cross section, but the cracks also impeded the wave propagation as tensile stresses cannot be transferred via unreinforced, cracked regions. tc = hc / cc = 280 mm / 4,112 m/s = 0.07 ms tc = hc / cc = 280 mm / 4,112 m/s = 0.07 ms (2) tc = hc / cc = 280 mm / 4,112 m/s = 0.07 ms (2) where: tc – time it takes for the wave to travel the beam’s height where: hc – height of the beam cc – wave propagation velocity of concrete Towards the end of the test, the concrete in the upper region of the beam spalled off in the transverse direction. The cracks leading to this spalling were visible between 2.6 ms and 9.9 ms after the impact. The higher the impactor velocity and accordingly the impact energy was, the more damage happened in this area. This is well visualized by plotting the burst mass over the kinetic energy of the impactor (see Fig. 3). The burst mass is the sum of all fragments that fell off the beam and which were weighted after the test. The top of the punching cone interfered with the area of lateral concrete spalling leading to a smeared damage consisting of the shear failure and lateral spalling on the upper side of the beam (see Fig. 1 b) and 2 b)). It is interesting that this lateral spalling did not occur right after the impact due to the lateral spreading of the impact force, but happened simultaneously to the cone untying from the rest of the concrete beam. 3.2 General behaviour of the beams This is why it did not happen when the acceleration force of the cone is small as is the case for specimen B250_0.0 (see Fig. 2 a)). The cone’s acceleration thus depends on the impact energy. Moreover, the impact most likely formed a three-dimensional cone like in the case of the plates [8, 9, 10]. That means that the cone gained width over both the length and the width of the concrete beam. This favoured the bursting at the top of the beam due to inclined cracks resulting from the formation of a three-dimensional cone. Fig. 3. Relationship between energy and burst mass Fig. 3. Relationship between energy and burst mass 3.3 Influences on the maximum strains The time lags between impact and maximum strains (Fig. 5) on the one hand, and the maximum strains (Fig. 6) and the maximum strain rates (Fig. 7), each compared to the impact energy. On the other hand, they were evaluated for the bonded and the unbonded strain gauges separately. In the case of strain gauges 1 and 3, the approximation is calculated from the absolute measured maxima of each test but the maximum of each gauge is displayed. The maximum strains measured by the unbonded strain gauges (SG no. 2) were between 4 and 7 Fig. 3. Relationship between energy and burst mass 3.3 Influences on the maximum strains The time lags between impact and maximum strains (Fig. 5) on the one hand, and the maximum strains (Fig. 6) and the maximum strain rates (Fig. 7), each compared to the impact energy. On the other hand, they were evaluated for the bonded and the unbonded strain gauges separately. In the case of strain gauges 1 and 3, the approximation is calculated from the absolute measured maxima of each test but the maximum of each gauge is displayed. The maximum strains measured by the unbonded strain gauges (SG no. 2) were between 4 and 7 5 5 https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) times higher than the ones recorded by the bonded strain gauges. That is probably the reason why eight of the ten unbonded gauges failed in the peak region before reaching peak II. The only two specimens where they recorded over the whole test duration were the beams B380_0.4 and B250_0.6. Fig. 4 shows the strains measured in B380_0.4. The reason for the high peak measured by the unbonded strain gauges was the bending crack in the middle. In all experiments, bending of the beams caused only one crack in the centre which opened quickly and led to a high strain concentration and thus plasticisation in the reinforcement at the position of the crack. The peak strain thus can only be measured if the strain gauge was applied at the exact position where the bending crack appeared. This means of course, that it was very unlikely to measure the peak with the bonded strain gauges as they would need to be located exactly where the crack opens. However, it was possible to measure the peak strain with the unbonded strain gauge as it measured an average strain in the region where the bending crack appeared and because the strains are almost constant over the unbonded length until necking starts. The only strains occurring on a local level before necking are the yielding strains [12]. As the strains measured by the strain gauge in the middle never reached the necking point, the assumption that the strains are approximately constant over the whole unbonded length is valid. Fig. 4. Strains measured by the three strain gauges of B380_0.4. SG 1 and 3 (solid and dotted line) were bonded whereas SG 2 (dashed line) was unbonded. The impact happened at time ‘0’. Fig. 4. 3.3 Influences on the maximum strains Strains measured by the three strain gauges of B380_0.4. SG 1 and 3 (solid and dotted line) were bonded whereas SG 2 (dashed line) was unbonded. The impact happened at time ‘0’. The two bonded strain gauges generally measured two distinct peaks I and II (see Fig. 4), which can be seen in the measurement of strain gauge 2 as well but they were not as obvious due to the generally higher strains. The first strains measured in all gauges started with the formation of the bending crack between 0.2 ms and 0.3 ms after the impact. The first peak I was measured about 0.5 ms after the impact which is right before the formation of the punching cone. This peak was a little delayed for the second strain gauge compared to the other two because the strains needed to be transferred from the position where the concrete cracked to the ends of the pipe and again to the middle of the reinforcement bar to the position of the strain gauge. From the time the punching cone arose and untied from the cross section, the strains decreased. The probable reason is that the bending radius in the untying part of the section increased leading to lower bending strains. The time when the second peak II was reached, which is higher than the first one for almost all beams, is plotted against the impactor velocity in Fig. 5. The only beams where the second peak II was not existent, and therefore lower than the first one, were beam B380_1.0, which was completely destroyed and therefore hard to evaluate, and beam B250_0.0, where the cone did not separate from the rest of the section (see Fig. 2 a) and which thus behaved differently from the other beams. Therefore, the measurements of beams B380_1.0 and B250_0.0 (marked with a circle in Fig. 5-7) were not included in the analysis. 6 6 https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) However, this points out that this global maximum of the bonded strain gauges was influenced by the untying of the cone. Furthermore, the time of the second peak II was not equal for all tests and therefore depended on the loading velocity. There seems to be a long time lag for low impactor velocities which decreases with increasing impactor velocities. 3.3 Influences on the maximum strains This trend can be observed for strain gauges 1 and 3 (black) as well as for strain gauge 2 (red), even though–as already explained–the evaluation of the time lag for the strain gauges no. 2 was difficult since most of them were destroyed before the second maximum. Fig. 5. Time lag between impact and maximum strain. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. Fig. 5. Time lag between impact and maximum strain. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. A rise in the impact energy affected the maximum strains in the centre, which were equal to peak II in Fig. 4, only slightly (see Fig. 6). The strains measured by the unbonded strain gauges slightly decreased, whereas the maximum strains of the bonded strain gauges slightly increased. There seems to be a maximum between 3,000 J and 4,000 J for the bonded strain gauges. However, the strong scattering of the values makes the relation weak. The relation between the maximum strain and kinetic energy for the unbonded strain gauges is not very robust either because most strain gauges failed in the peak region before peak II was even reached. This leads to an uncertainty concerning the reliability of the measured data. Additionally, it is unclear whether the relationship between the strains and resistance of the strain gauges remained linear at strains as high as 4,800 μm/m, although the manufacturer claims the dynamic tensile strain limit to be 5,000 μm/m. Fig. 6. Relationship between energy and maximum strain. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. Fig. 6. Relationship between energy and maximum strain. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. 7 7 https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) A special aspect of certain strain measurements for strain gauges 1 and 3 should be pointed out: it seems that there remained a residual strain after the second peak II (compare Fig. 4). There are two possible explanations for this behaviour. (1) The steel deformed above its yield strain and a plastic strain remained after the impact. It is unrealistic, however, that the steel deformed plastically if it was not stressed above the yield strength as is the case for all bonded strain gauges with the maximum strain of about 2000 μm/m (see Fig.6). The theoretical yield strain of steel is 2000 μm/m. Nevertheless, it is unclear whether the peak of the bonded strain gauges is measured correctly as the strains were averaged over a gauge length of 2.6 mm. (2) A second option is that the measured residual strains were not really plastic strains but result from the fact that the mass of the untied punching cone is solely held by the reinforcement bars. This would also explain, why the residual strains in all three reinforcement bars are similar. Another remarkable fact is that there are considerable differences between the measurements of strain gauge 1 and 3 in some cases. This could be due to an eccentric impact. Further experiments and numerical studies are planned in the near future (see Section 4.2) in order to analyse these currently insufficiently clarified phenomena in greater depth. 3.4 Influences on the maximum strain rates In about half of the cases, the maximum strain rate for gauges 1 and 3 occurred in the approach of the first peak of the strains whereas it was measured in the approach of the second In about half of the cases, the maximum strain rate for gauges 1 and 3 occurred in the approach of the first peak of the strains whereas it was measured in the approach of the second In about half of the cases, the maximum strain rate for gauges 1 and 3 occurred in the approach of the first peak of the strains whereas it was measured in the approach of the second 8 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) https://doi.org/10.1051/matecconf/202032301007 peak for the other half of the strain gauges. This enforces the hypothesis that the strain rate was independent of the loading velocity. For the unbonded strain gauges, the maximum strain rate was in all cases measured during the approach of the first peak. b) B250_0.4 a) B380_0.4 b) B250_0.4 Fig. 8. Comparison of strain rate a) B380 0 4 a) B380_0.4 Fig. 8. Comparison of strain rate Fig. 8. Comparison of strain rate 3.4 Influences on the maximum strain rates The strain rates were directly derived from the strains. To smoothen the strain signal before calculating the strain rates, a strain vector consisting of the medians of 250 single strain values for each element of the strain rate vector was used. The maximum strain rate of each test is plotted in Fig. 7. To control the derivation result, the signals obtained from integration of the strain rates were compared to the measured strains. In fact, these graphs matched the real strain signals well. Fig. 7 shows that the strain rates had a similar relation to the impact energy as the strains (Fig. 6). That means that the strain rates as well as the strains were almost independent of the kinetic energy. Excluded from the analysis were again beam B380_1.0 and B250_0.0 (marked in Fig. 7). As for the strains, the strain rates of the unbonded strain gauges were multiple times higher than for the bonded ones. This was due to the fact that the maximum strains were a lot higher for the unbonded strain gauges and the two values were occurring almost simultaneously. Fig. 7. Relationship between energy and maximum strain rate. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. In about half of the cases, the maximum strain rate for gauges 1 and 3 occurred in the approach of the first peak of the strains whereas it was measured in the approach of the second Fig. 7. Relationship between energy and maximum strain rate. Approximation for SG 1 and 3 (black) and SG 2 (grey). Data points of beams B380_1.0 and B250_0.0 (circled) were excluded in the analysis. 4.1 Influences on the structural behaviour, maximum strains and strain rates The inclination of the punching cone depended only little on the impactor energy. However, the acceleration of the cone increased with increasing impact velocity leading to wider cracks. This is also the reason for higher burst masses at higher impact energies. The steel strains in the middle of the beam were almost independent of the impactor energy. There were two peaks in the strain measurement, the first after about 0.5 ms. This was the time when the punching cone started to form. The time lag to the second peak depended on the impactor velocity as it decreased with increasing impactor velocity. The maximum strain measured by the bonded strain gauges was approximately 2,000 μm/m. However, the measured peaks vary strongly in some specimens. The strains measured by the unbonded strain gauges were multiple times higher because they captured the localized bending strains. They were as high as 4,800 μm/m. However, it was hard to relate the measurements of the unbonded strain gauges to any other measured data as only two of them worked for the whole test duration. The strain rates of the bonded strain gauges ranged between 0.3 1/s and 2.5 1/s. As well as the strains, they did not really depend on the impact energy. The maximum strain rates of the unbonded strain gauges, by contrast, reached values between 5.9 1/s and 7.9 1/s. 4.2 Conclusions To confirm the findings, a more detailed study with different impactors and fine-tuned impact energies should be performed. The impactor velocity as well as the impactor mass and its nose geometry should be varied. In addition, plates could be used as pulse shapers to evaluate softer impact scenarios with more distributed crack patterns. The supports can be changed to fixed supports by applying a prestressing force to the bolts holding the beams down to vary the support conditions. After the test, the reinforcement could be pulled out and checked for local plasticisation which could also prove whether the residual strains in the bonded strain gauges were plastic or whether they resulted from holding the punching cone. 9 9 https://doi.org/10.1051/matecconf/202032301007 AMCM 2020 MATEC Web of Conferences 323, 01007 (2020) Additionally, tests with multiple strain gauges over the length of the reinforcement bar will be performed to see differences between the strains and strain rates at different positions. It is likely that the strains measured close to the punching cone and therefore to wider cracks are higher than those measured in the middle of the beam. The multitude of strain gauges over the length of the reinforcement bar furthermore enables the analysis of bond stresses and wave propagation within the specimen. The fact that all strain gauges were at the same position in the present study makes it impossible to capture these effects and to decide whether the strains resulted from wave bending, wave propagation or the formation of the punching cone. To guarantee the measurement of plastic strains in the region of wide cracks– in the middle of the beam and at the position of the punching cone–unbonded strain gauges can be applied. pp Moreover, different beam geometries should be tested. The beam’s height as well as thickness should be varied because they influence wave propagation and the shape of the punching cone. With a reduced thickness, the punching cone will be more two-dimensional, probably leading to lower burst masses. In addition, the reinforcement can be varied and stirrup reinforcement can be used. To complete the experiments, a Finite Element Analysis will be conducted. This FEA gives insight into the specimens and allows finer evaluation of the reinforcement strains. Lastly, small scale tests in the split Hopkinson pressure bar can be derived from the beam tests. 4.2 Conclusions This helps to conduct realistic bond tests based on the experimentally observed behaviour of the beams and the reinforcement within them. The presented project was funded by the German Federal Ministry of Economic Affairs and Energy (BMWi, project no. 1501566) on the basis of a decision by the German Bundestag. References 1. P. Máca, J. Zatloukal, R. Sovják, Structures under Shock and Impact XIII, 149-158 (2014). ( ) 2. A. Somraj, K. Fujikake, B. Li, International Journal of Protective Structures 4, 521- 543 (2013). 2. A. Somraj, K. Fujikake, B. Li, International Journal of Protective Structures 4, 521- 543 (2013). ( ) 3. K. Fujikake, B. Li, S. Soeun, Journal of Structural Engineering 135, 938-950 (2009). 4. S. D. Adhikary, B. Li, K. Fujikake, International Journal of Protective Structures 6, 1, 81-111 (2015). 5. M. Just, M. Curbach, T. Kühn, M. Hering, Behavior of structural components during impact load conditions caused by tank collisions (aircraft fuel tanks): Phase 1A: Scale effects under impact loading (Final report of the project 1501438 funded by BMWi) (2016), doi: https://doi.org/10.2314/GBV:868615218. 6. T. Kühn, D. Schmidt, T. Hänztschel, O. Million, A. Stolz, M. Curbach, K. Thoma, Bautechnik 93, 717-724 (2016). 7. M. A. Meyers, Dynamic behavior of materials, (University of California, San Diego, 1994). 8. M. Hering, F. Bracklow, T. Kühn, M. Curbach, Struct. Concr., 21, 587-598 (2020). 9. T. Kühn, M. Curbach, Proceedings of DYMAT, 7-11 (2015). 10. M. Hering, T. Kühn, M. Curbach, U. Häußler-Combe, Proceedings of the fib Symposium (2016). 11. L. E. Kinsler, A. R. Frey, A. B. Coppens, J. V. Sanders. Fundamentals of Acoustics (Wiley, 2000). 12. F. Hahn, Werkstofftechnik-Praktikum: Werkstoffe prüfen und verstehen (Fachbuchverlag Leipzig im Carl Hanser Verlag, 2015). 10
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Accidental Water Pollution Risk Analysis of Mine Tailings Ponds in Guanting Reservoir Watershed, Zhangjiakou City, China
International journal of environmental research and public health/International journal of environmental research and public health
2,015
cc-by
8,655
Article Renzhi Liu 1,*, Jing Liu 1, Zhijiao Zhang 1,2, Alistair Borthwick 3,4 and Ke Zhang 5 Received: 14 September 2015; Accepted: 23 November 2015; Published: 2 December 2015 Academic Editor: Miklas Scholz Renzhi Liu 1,*, Jing Liu 1, Zhijiao Zhang 1,2, Alistair Borthwick 3,4 and Ke Zhang 5 Received: 14 September 2015; Accepted: 23 November 2015; Published: 2 December 2015 Renzhi Liu 1,*, Jing Liu 1, Zhijiao Zhang 1,2, Alistair Borthwick 3,4 and Ke Zhang 5 Received: 14 September 2015; Accepted: 23 November 2015; Published: 2 December 2015 Academic Editor: Miklas Scholz Renzhi Liu 1,*, Jing Liu 1, Zhijiao Zhang 1,2, Alistair Borthwick 3,4 and Ke Zhang 5 Received: 14 September 2015; Accepted: 23 November 2015; Published: 2 December 2015 Academic Editor: Miklas Scholz 1 State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, Haidian District, Beijing 100875, China; 201521180038@mail.edu.cn (J.L.); zzhijiao@163.com (Z.Z.) 1 State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, Haidian District, Beijing 100875, China; 201521180038@mail.edu.cn (J.L.); zzhijiao@163.com (Z.Z.) 2 Guangdong Provincial Academy of Environmental Science, Center for Environmental Risk & Damages Assessment, Guangzhou 510045, China 2 Guangdong Provincial Academy of Environmental Science, Center for Environmental Risk & Damages Assessment, Guangzhou 510045, China 3 School of Engineering, the King’s Buildings, The University of Edinburgh, Edinburgh EH9 3JL, UK; Alistair.Borthwick@ed.ac.uk 4 St Edmund Hall, Queen’s Lane, Oxford OX1 4AR, UK 5 College of Civil Construction Engineering, Zhengzhou Institute of Aeronautical Industry Management Zhengzhou 450015, China; po_drama@163.com 5 College of Civil Construction Engineering, Zhengzhou Institute of Aeronautical Indu Zhengzhou 450015, China; po_drama@163.com Zhengzhou 450015, China; po_drama@163.com g p * Correspondence: liurenzhi@bnu.edu.cn; Tel.: +86-10-5880-6679; Fax: +86-10-5880-6679 Abstract: Over the past half century, a surprising number of major pollution incidents occurred due to tailings dam failures. Most previous studies of such incidents comprised forensic analyses of environmental impacts after a tailings dam failure, with few considering the combined pollution risk before incidents occur at a watershed-scale. We therefore propose Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA), designed for multiple mine tailings ponds, stemming from previous watershed-scale accidental pollution risk assessments. Transferred and combined risk is embedded using risk rankings of multiple routes of the “source-pathway-target” in the WTPRA. The previous approach is modified using multi-criteria analysis, dam failure models, and instantaneous water quality models, which are modified for application to multiple tailings ponds. Article The study area covers the basin of Gutanting Reservoir (the largest backup drinking water source for Beijing) in Zhangjiakou City, where many mine tailings ponds are located. The resultant map shows that risk is higher downstream of Gutanting Reservoir and in its two tributary basins (i.e., Qingshui River and Longyang River). Conversely, risk is lower in the midstream and upstream reaches. The analysis also indicates that the most hazardous mine tailings ponds are located in Chongli and Xuanhua, and that Guanting Reservoir is the most vulnerable receptor. Sensitivity and uncertainty analyses are performed to validate the robustness of the WTPRA method. Keywords: risk analysis; mine tailings pond; heavy metal; water pollution; Guanting Reservoir; watershed www.mdpi.com/journal/ijerph www.mdpi.com/journal/ijerph 1. Introduction Industrial mining activities occur in almost every part of the world [1]. Tailing dams contain liquids (toxic, hazardous, or even radioactive) which are pollutant sources of great damage risk to humans, the environment, and ecosystems [2]. Worldwide, at least 63 major tailings dam failures were reported that caused significant pollution during 1960–2014 [3]. These tailing-dam pollution accidents accounted for 62% of the total number of major tailings dam failures during the same period. Acutely polluted water from dam breaks caused interruption of water supply (Baia Mare Int. J. Environ. Res. Public Health 2015, 12, 15269–15284; doi:10.3390/ijerph121214983 www.mdpi.com/journal/ijerph Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 and Baia Borsa dam failures in Romania in 2000 [4]), human fatalities (Omai tailings dam failure in Guyana in 1995 [5]), massive fish kills (Porco tailings dam breaches in Bolivia in 1996 [6]), agricultural damage and natural reserve failure (Aznalcóllar tailings dam failure in Spain in 1998 [7]), and enormous economic loss (Tao Canyon tailings dam failure in U.S.A. in 1994 [8]). In recent years, the frequency of occurrence of such incidents has begun to shift geographically from developed countries to developing countries [9]. In P.R. China, the Ministry of Environmental Protection (MEP) responded directly to 56 reported tailing-related pollution accidents in 2006–2014 [10]. This is in the context of 11,666 mine tailings ponds that had come into operation by the end of 2013 [11]. Other major tailing-related pollution accidents in China include the Zhen’an gold tailings spill in Shaanxi Province in 2006, the Wulong gold tailings leakage in Liaoning Province in 2008, the Minjiang manganese tailings spill in Sichuan Province in 2011, and the Wantai manganese tailings leakage in Guizhou Province in 2012. Much effort has been expended on the environmental impacts of tailings dam failures [12–14]. However, these previous studies focused on monitoring, managing, or remediating the fluvial environment in the immediate aftermath [5,7,15,16] or (mostly) in the long-term aftermath [4,17–22] of such failures. Few tackled pollution risk analysis and risk management before a single tailings dam failure and ensuing environmental pollution accident occurred [2,23,24], much less the accidental pollution risk analysis of multiple tailings dams (ponds) at a watershed-scale. We previously developed a watershed-scale accidental pollution risk assessment method [25], adopting the idea of risk ranking from the Relative Risk Model [26,27]. 2. Methodology and Materials In watershed-scale accidental pollution risk assessment, existing “source-habitat-impact” risk routes are combined from multiple sources, receptors, and impacts at watershed-scale [25]. The assessment method embeds spatially cumulative impacts [28] by adding the risk ranks of multiple risk routes. Any single risk route, similar to a plausible “source-pathway-target” relationship [2,23,29], ensures a cascade of pollution hazards reaching downstream receptors. Taking advantage of the foregoing approach, we develop a Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA) method. By means of a general risk analysis process at watershed-scale [25], the WTPRA method provides detailed outputs specific to mine tailings ponds (dams). 1. Introduction Following this framework, we now propose a Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA) method, which is designed for the pollution risk analysis of tailings ponds, the aim being to assist in the prevention of, or preparation for, water pollution accidents from tailings dam failures. The WTPRA method uses multi-criteria analysis, dam failure models, and instantaneous water quality models to complete a full pollution risk analysis of multiple tailings ponds at a regional-scale. The study area, Guanting Reservoir Watershed, in Zhangjiakou, accommodates over 270 metal mine tailings ponds, whose presence represents a hazard to the water catchment area of Guanting Reservoir, the largest backup drinking water resource for Beijing. We use WTPRA to analyze the pollution hazard of tailings ponds, vulnerability of receptors, and overall risk for each sub-watershed, all of which are useful for decision-making in the context of the environmental risk management of watersheds containing tailings ponds. The simulation results of tailing fluid propagation after a dam break provides key information for incident preparedness strategies and early warning systems. 2.1. Delineation of Risk Sub-Watersheds Delineation of risk sub-watersheds involves breaking down a watershed into pollution risk regions that mark out the boundaries of the sub-areas utilized for risk analysis. This decomposition technique underpins the whole analysis process. In practice, we use the hydrological analysis function in ArcGIS tools to derive the flow networks and catchment basins from a Digital Elevation Model (DEM) of the study area [30]. Selected adjacent sub-watersheds may be amalgamated to 15270 15270 2.2. Hazard Analysis of Mine Tailings Ponds Dam failure is the worst cause of tailings fluids being released into the environment, followed by slurry pipeline failure, drainage stock or damage, piping, seepage, cracking of dam wall, and abnormal discharge. Here abnormal discharge is defined as a tailings wastewater discharge with an abnormally high volume or concentration of contaminants. The pollution hazard of a tailings pond, according to the risk source hazard approach proposed by Liu et al. [31], is determined by its state and control, which have been adopted into a national guideline [32]. This guideline attributes the hazard to its associated harmfulness (H) and control reliability (R), and a ranking matrix (listed in Table 1) is used to determine the hazard score. Harmfulness is classed as high, medium, and low level by considering a combination of the deleterious properties of the substances stored in the tailings pond, the storage capacity, the dam height, and the operation time. Control reliability is graded as unreliable, medium, and reliable by summing rankings related to the tailings pileup, water recycling, and susceptibility to flooding and geological hazards (e.g., earthquake, landslide, debris flow, or fracture), safety level, and preparation of emergency response [32]. Risk investigations are required to obtain data for mine tailings ponds over the entire watershed. 15270 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 ensure that appropriate tailings ponds, downstream rivers, and sensitive receptors (i.e., humans, environment, and ecosystem) are incorporated into a given risk region. 2.3. Vulnerability Analysis of Receptors A water pollution hazard, arising from mine tailings ponds, threatens the receptors including drinking water intakes, irrigation water intakes, water bodies, residential land, and agricultural land, woodland, and nature reserves in a watershed [25]. Receptor vulnerability to tailings water pollution is ranked according to its magnitude and sensitivity using three grades, 6, 4, and 2, in accordance with national criteria or expert judgments (see Table 2). Table 1. Pollution hazard ranking matrix for mine tailings pond *. Harmfulness (H) Reliability (R) Unreliable Medium Reliable High 10 8 6 Medium 8 6 4 Low 6 4 2 * Adapted from Technical Guideline for Environmental Risk Assessment of Tailings pond [32]. The scale of values is 0–10, relative and dimensionless, 10 referring to the highest and 0 to the lowest. Table 1. Pollution hazard ranking matrix for mine tailings pond *. * Adapted from Technical Guideline for Environmental Risk Assessment of Tailings pond [32]. The scale of values is 0–10, relative and dimensionless, 10 referring to the highest and 0 to the lowest. * Adapted from Technical Guideline for Environmental Risk Assessment of Tailings pond [32]. The scale of values is 0–10, relative and dimensionless, 10 referring to the highest and 0 to the lowest. 2.4. Identification of Risk Routes A combination of multiple risk routes (see Figure 1) is identified which connects tailings ponds, receptors, pathways (exposures), and endpoints. Risk receptors mentioned in Section 2.3 are located either in a waterway (e.g., drinking water intakes) or adjacent to a waterway (e.g., agricultural land). By focusing on the water environment and its collateral values (i.e., values of drinking water supply) (resident safety), irrigation water (property safety), and habitats (ecosystem health), we select resident safety, property safety, water quality, and ecosystem health as the risk assessment endpoints of tailings-related accidental water pollution. In particular, public health may be damaged by harmful tailings water coming into direct contact with human bodies in residential areas, or through humans drinking polluted water from water intakes. 15271 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Table 2. Vulnerability ranking criteria for risk receptors *. Receptors Grade Criteria Drinking water intakes 2 Population served ď 50,000 4 50,000 < Population served ď 100,000 6 Population served > 100,000 Irrigating water intakes 2 Farming area served ď 100 km2 4 100 km2 < Farming area served ď 200 km2 6 Farming area served > 200 km2 Residential land 2 Population density ď 3500/km2 4 3500/km2 < Population density ď 6000/km2 6 Population density > 6000/km2 Agricultural land 2 Green manure crops 4 Commercial crops 6 Food crops Woodland 2 Shrub land 4 Sparse woodland 6 Forest land Water bodies ** 2 Environmental functions at grades IV and V 4 Environmental function at grade III 6 Environmental functions at grades I and II Nature reserves *** 2 Experimental area 4 Buffer area 6 Core area Table 2. Vulnerability ranking criteria for risk receptors *. 2.4. Identification of Risk Routes * Taken from our previous study [25]; ** According to the environmental function zones of surface water [33], grade I being for fountainhead water or national nature reserves, grade II for class 1 protective areas of centralized drinking water sources, rare aquatic habitats, fish and shrimp spawning ground, or nursery ground of larvae, grade III for class 2 protective areas of centralized drinking water sources, fishery areas such as the wintering grounds of fish and shrimp, migration channels, and aquiculture zones, or swimming zones, grade IV for industrial water or recreation water without direct contact with the human body, and grade V for the agricultural water or landscape water; *** According to the zones of nature reserves [34], a core area is an intact natural ecosystem and habitats of valuable, rare, or endangered species, with no entry permitted; a buffer area is buffering the core area, entry solely permitted for scientific researches; and an experimental area is a peripheral area of the buffer area, entry permitted for scientific experiments, practice teaching, study tours, and so on. Figure 1. Combination of Risk Routes; adapted from Liu et al. [25]. Figure 1. Combination of Risk Routes; adapted from Liu et al. [25]. 15272 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 2.5. Exposure and Effect Analyses Exposure analysis is used to screen plausible source–receptor combinations in a single risk route. Dam failures, initiating the most severe tailings fluid spills, potentially place risk receptors at the greatest exposure to tailings which may contain soluble heavy metal ions and/or toxic chemicals (such as acids and cyanide). We therefore opt to simulate the fate of tailings fluids (in case of dam failure) to help weight the probability that they propagate to the receptor. An exposure filter [27] is accordingly assigned as 0, 0.5, or 1 indicating low, medium, or high probability, respectively. Effect analysis allows us to weight the probability that exposure to the receptor causes the resulting effect to reach a given endpoint. The effect filter is assigned 0, 0.5, or 1 corresponding to low, medium, or high probability. We use a combination of a dam failure model (before the flow reaches a river) and an ensuing pollutants convection-diffusion model (after the flow discharges into the river) to simulate approximately the fate of tailings fluid and the materials contained within. 2.5.1. Dam Failure Modeling A dam failure model is constructed to simulate the routing and movement of the tailing flow discharged after the dam breach. According to Pérez-López et al. [13], a tailing dam may be categorized as a gravity earth dam while the tailing flow can be considered to be water containing hyper-concentrated sediment, such as observed in debris and mud flows. Here, we use a simplified form of Saint-Venant equations [35] and empirical equations commonly used in China [36,37] to simulate the dam breach. Numerical solutions are obtained for the breach width, maximum discharge at time of failure, and maximum peak value of downstream discharge. According to historical dam failure data collected by Yellow River Institute of Hydraulic Research of China [36], in the case of a dam breach the average breach width (b, m) is given by b “ KpW 1 2 B 1 2 Hq 1 2 (1) (1) where W is the volume of water stored above breach invert at time of failure, (m3); B is the length of 1 1 dam, (m); H is the depth of water above breach invert at time of failure, (m); W 2 B2 H represents the total energy of flow; and K is a coefficient related to the impact resistance quality of the dam material, generally 0.65 for clay and 1.3 for loam. Using the simplified Saint Venant equations [35], the maximum discharge of flow at time of failure (QM, m3/s) takes the form QM “ 8 27 ?gp B b q 1 4 bH 3 2 (2) (2) where g is gravitational acceleration. Based on unsteady flow theory, noting the maximum discharge of flow [37], the maximum peak value of downstream routing discharge (QLM, m3/s) can be empirically deduced from, where g is gravitational acceleration. Based on unsteady flow theory, noting the maximum discharge of flow [37], the maximum peak value of downstream routing discharge (QLM, m3/s) can be empirically deduced from, QLM “ W W QM ` L vk (3) (3) where L is the distance of the tailing peak flow from the dam, (m); v is the maximum average velocity of flow during the flood period, (m/s); and k is an empirical coefficient, (s). The value of v can be the recorded historical maximum or simply assigned values in the ranges 1–2, 2–3, or 3–5 for plains, hilly areas, or mountainous regions, respectively. 2.6. Ranking Risk of Sub-Watersheds Following Liu et al. [25], a risk route score is calculated by multiplying together the hazard ranking (H), vulnerability ranking (V), exposure filter (Ex), and effect filter (Ef). The relative risk score (RS) of tailings-related pollution accidents in a sub-watershed is obtained by integrating all risk routes which end within the same sub-watershed. Meanwhile, the overall risk score of a tailings pond is obtained by combining all risk routes emanating from itself. Interval breaks of 150, 300, and 450 are used to rank the risk levels of the sub-watersheds as low, medium, high, and very high. The relative risk score is thus defined as (6) RSi “ ÿ Hij ˆ Vil ˆ Exjl ˆ E flm (6) where i is the sub-watershed series (sub-watershed 1, 2, 3, etc.), j is the tailings pond series, l is the receptor series, and m is the endpoint series. 2.7. Uncertainty Analysis Uncertainty is addressed using Monte Carlo analysis, where prescribed probability distributions are assigned to risk scores and filters according to their value characteristics. The Monte Carlo simulations have been undertaken for 1000 iterations using Crystal Ball® 2000 software (Decisioneering, Inc., Denver, CO, USA), and the output distributions for each sub-watershed then derived, indicating all possible risk scores and the probability of those risk scores based on the uncertainty within the model inputs or parameters. The correlation coefficients of sources, receptors, and filters in each sub-watershed have been generated by sensitivity analysis, reflecting the uncertainty results, whether influenced by model sensitivity and/or parameter uncertainty. It should be noted that the higher the correlation coefficient, the greater the contribution to the overall uncertainty. 2.5.2. Pollutants Convection-Diffusion Modeling For tailing flow propagation along a river, we use the following simple instantaneous water quality model (based on convection-diffusion principles for an instantaneous point source) to simulate approximately the fate of chemicals and therefore estimate exposure probability: BC Bt ` ux BC Bx “ Mx B2C Bx2 ´ KC (4) (4) The analytical solution is given by, Cpx, tq “ ż △t 0 C0ux ?4πMxtexpr´px ´ uxq2 4Mxt sexpp´Ktqdt (5) (5) where t is time, (s); C is the concentration of a pollutant, (mg/L); C0 is the completely mixed concentration of tailings water and river water during a prescribed time interval, (mg/L); x is stream-wise distance, (m); ux is the mean flow rate of the river, (m/s); Mx is the longitudinal mixing or dispersion coefficient, (m2/s); and K is the rate of degradation, (d´1). 2.5.1. Dam Failure Modeling The coefficient k is empirically assigned 0.8~0.9, 1, or 1.1~1.5 for plains, hillsides, or mountains. 15273 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 2.5.2. Pollutants Convection-Diffusion Modeling 2.5.2. Pollutants Convection-Diffusion Modeling 2.5.2. Pollutants Convection-Diffusion Modeling 2. Pollutants Convection-Diffusion Modeling Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Shanxi Province, and Beijing, respectively. The watershed within Zhangjiakou contains the Yang River which is 192 km long and the Sang-kan River of length 175 km, and occupies a basin area of 17,965 km2. We selected Guanting Reservoir watershed within Zhangjiakou as the study area because it primarily affects the water catchment supplying Guanting Reservoir, and so has a major influence on the reservoir’s water security and quality. Another reason is that Zhangjiakou possesses abundant metal mineral resources (e.g., iron, gold, silver, and lead zinc), so faces a considerable acute pollution threat from many heavy metal mine tailings ponds. About 250 iron mine tailings ponds and 22 heavy metal mine tailings ponds are located within the selected area (see Figure 2), most of them along the Yang River and its biggest branch, the Qingshui River. The study area covers four administrative districts (see 1–4 in Figure 2) and nine counties (i.e., Shangyi, Wangquan, Huai’an, Chongli, Xuanhua, Yangyuan, Wei, Zhuolu, and Huailai). Besides Guanting Reservoir, the fact that several drinking water intakes are situated along the mainstream channel raises the importance of risk analysis concerning local water security and water quality. Moreover, several valleys in Chongli County have been chosen to be sporting venues for the 2022 Beijing-Zhangjiakou Winter Olympic Games (24th). Figure 2. Guangting Reservoir watershed within Zhangjiakou. Figure 2. Guangting Reservoir watershed within Zhangjiakou. 2.8.1. Study Area Guanting Reservoir is mostly located in Zhangjiakou City, northwest Hebei Province of China (see Figure 2). The reservoir is owned by Beijing and serves as its most important backup drinking water resource. The watershed of Guanting Reservoir has a surface area of 43,402 km2 and is located in Inner Mongolia Province, Shanxi Province, Hebei Province, and Beijing. Three tributary watersheds, Sang-kan River, Yang River, And Guishui River, have their origins in Inner Mongolia, 15274 2.8.2. Data Sources Three categories of data were prepared on risk sources, risk receptors, and waterways. Risk sources of mine tailings ponds (dams) were derived from two regional-scale investigation projects in Zhangjiakou City. A preliminary investigation was undertaken into tertiary prevention and control of acute water pollution risk from mine tailings ponds (dams) as part of the 12th five year plan of Zhangjiakou City during December, 2010. According to the unpublished investigation, there then existed over 520 mine tailings ponds in total in Zhangjiakou; with 488, 30, and 2 ponds for iron, heavy metal (gold, silver, or lead zinc), and coal mines, respectively. We selected the heavy metal mine tailings ponds (which potentially pose the greatest toxic water pollution threats to Guanting 15275 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Reservoir and the other drinking water intakes), and proceeded with a more specialized investigation, encompassing field investigations and survey questionnaires (addressed to mining enterprises) into 22 heavy metal mine tailings ponds (within the study area, labelled T1-T22) held from July to September, 2014. Comprehensive information was obtained on each tailing pond (e.g., dam height, storage capacity, security level, operation time, and flood control criteria) with the assistance of local environmental protection bureaus. Concentrations of soluble heavy metal ions (e.g., ions of lead, mercury chrome, or cadmium) and/or toxic chemicals (e.g., acid and cyanide) were collected monthly from routine quality monitoring of tailings pond water which were conducted by the Zhangjiakou Environmental Monitoring Centre (EMC) in 2013. g Risk receptors in the Guanting Reservoir Watershed were identified as drinking water intakes (DW), residential land (RL), agricultural land (AL), woodlands (WL), and water bodies (WB). Locations and spatial distributions of land receptors (RL, AL, and WL) were derived from a 1:100,000 scale land-use map of Guanting Reservoir within Zhangjiakou (see Figure 2). This map was interpreted from the relevant remote sensing image obtained by Landsat-7 in 2010, and downloaded from the China Centre for Resources Satellite Data and Application (CRESDA) at 30 m ˆ 30 m spatial resolution. Other information on land receptors (i.e., population and crop categories) and locations, areas, and services (relating to water intakes and local water environmental functions) were obtained from Zhangjiakou City Statistical Yearbook (2013), Zhangjiakou Environmental Bulletin (2013), and data collected in 2013 by municipal bureaus of water resources, forestry, agriculture, and environmental protection. 2.8.2. Data Sources Waterway data, including the watershed boundary, were derived from a 90 ˆ 90 m DEM, also obtained from CRESDA. The water system digital map and spatial area of Guanting Reservoir were computed by the Zhangjiakou Municipal Water Resources Bureau. Hydrological data were provided by Zhangjiakou Municipal Hydrographic Bureau. Spatial administrative boundary data were determined from the 2010 land-use map. 3.1. The Tailings Pond Pollution Risk Map Taken together, the 22 sub-watersheds (labelled RR1-RR22, see Figure 3) comprise the whole Guanting Reservoir Watershed in Zhangjiakou. The Yang River and Sang-kan River basins contain 15 sub-watersheds (RR1-RR15) and 6 sub-watersheds (RR17-RR22) respectively, and both rivers eventually flow into sub-watershed RR16, a confluence area in which the Guanting Reservoir is located. All 22 heavy metal mine tailings ponds (labelled T1-T22) were identified as hazardous sources, and five categories of risk receptors (see Section 2.8.2) were analyzed in terms of vulnerability. Risk assessment endpoints comprised resident safety (RS), property safety (PS), water quality (WQ), and ecosystem health (EH) (see Section 2.4). Figure 3 shows the resulting tailings pond pollution risk map generated for Guanting Reservoir Watershed, Zhangjiakou. From the map it is evident that sub-watersheds RR11 and RR16 are at the greatest risk of acute water pollution accidents from tailings pond failures. Sub-watersheds RR4 and RR5 are at high risk; sub-watersheds RR8, RR10, and RR15 are at medium risk; and sub-watersheds RR7, RR9, RR14, RR17, and RR18 are at low risk. The remaining other 10 sub-watersheds are not at risk. These sub-watersheds, RR1-RR3, RR6, RR12-RR13, and RR19-RR22, are mostly located in the upstream parts of the selected watershed. In general, the downstream areas and two tributary basins (for the Qingshui River and Longyang River) are exposed to higher risks, the midstream reach is less at risk, and the upstream reach experiences roughly no risk. 15276 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Figure 3. Risk ranking map for sub-watersheds RR1-22 in Guanting Reservoir Watershed within Zhangjiakou. Figure 3. Risk ranking map for sub-watersheds RR1-22 in Guanting Reservoir Watershed within Zhangjiakou. 3.2. Most Hazardous Tailings Ponds Figure 2 shows that the majority of metal mines are located in the upstream and midstream reaches of the Yang River basin. However, 250 (i.e., 92%) of these are iron ore mines whose tailings water is less hazardous owing to low observed levels of heavy metal ions or other dangerous chemicals. The other 22 (i.e., 8%) mine tailings ponds are the more hazardous sources, linked to the gold, silver, and lead zinc mines situated at Chongli (10), Xuanhua (10), Yangyuan (1), and Huailai (1). By overlaying the locations of the mine tailing ponds with Figure 3, it is found that ponds T1-T9 and T11-T19 are located respectively in the Longyang River and Qingshui River basins. Both rivers are branches of the Yang River. Resultant hazard rankings indicate that six heavy metal mine tailings ponds (T4-T6, T12, T16, and T18) are at medium hazard, with the remaining 16 at low hazard. Figure 4 presents the sum risk scores for each tailings pond, obtained by combining every risk route originating from a particular tailings pond. The most risky tailings ponds (risk score >200) are T4-T6, and T12; these ponds are inherently the most hazardous and/or capable of transmitting threats to more vulnerable receptors downstream. By simulating the fate of tailings fluid containing heavy metals, it was found that only a few tailings ponds (i.e., T12, T17 and T19) along the Qingshui River were likely to transfer pollution threats to the mainstream of the Yang River; no threat was posed to the Guanting Reservoir by either these ponds or those along the Sang-kan River. However, the failure of eight tailings ponds/dams (i.e., T1, T2, T4-T6, and T8-T9 in Longyang River and T20 in Liuchuan River) would cause serious pollution events in the Yang River and Guanting Reservoir. For Guanting Reservoir, the furthest stressor is T20 with a stream-wise distance of 118 km, and the closest is T6 with a stream-wise distance of 78 km. For example, by the time pollutants released from T4 would arrive at Guanting Reservoir, the concentrations of lead (Pb) and cadmium (Cd) would nevertheless reach 37 and 8.7 times the water quality standard (Grade III). 15277 15277 15277 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Figure 4. Risk score for each heavy metal mine tailings pond. Figure 4. Risk score for each heavy metal mine tailings pond. 3.4. Significantly Impacted Endpoints Figure 6 shows the sum risk scores by each assessment endpoint in the sub-watersheds (excluding no risk sub-watersheds). Property safety (PS) is the most impacted endpoint over the majority of the entire watershed. Water quality (WQ) is another significantly impacted endpoint. Resident safety (RS) must be a priority, especially in the RR4, RR11, and RR16 areas. In RR16, ecosystem health is the most significantly impacted endpoint and the values of other endpoints are also quite high. Figure 6. Risk score by each endpoint for sub-watersheds RR1-22 (excluding no-risk sub-watersheds). The abbreviations in the legend relate to risk assessment endpoints and are defined as follows: RS is resident safety; PS is property safety; WQ is water quality; and EH is ecosystem health. Figure 6. Risk score by each endpoint for sub-watersheds RR1-22 (excluding no-risk sub-watersheds). The abbreviations in the legend relate to risk assessment endpoints and are defined as follows: RS is resident safety; PS is property safety; WQ is water quality; and EH is ecosystem health. 3.3. Most Vulnerable Receptors Seven main underground drinking water intakes (D1-D7) serve urban areas, of which four (along the river) are plausibly susceptible to tailings pond pollution, namely: D1 in the RR4 area of the Qingshui River; D4 in RR3; D5 in RR10; and D6 in RR9 of the Yang River. The most sensitive and highest capacity drinking water intake, Guanting Reservoir, is located at the bottom of the whole catchment (RR16) (see Figure 2). Again, by simulating the fate of tailings fluid contaminated by heavy metals (see Section 2.5), it is found that: D1 is susceptible to abrupt pollution from T12, T15, and T17-T19; D4 and D5 are free from pollution threats; and D6 is exposed to T10 and T20. Guanting Reservoir is severely threatened by T1, T2, T4-T6, T8-T10, and T20 located in RR9 and R11. However, no tailings pond threatens the Olympic sites recommended in Chongli County, Zhangjiakou. Figure 5 presents the sum risk scores of sub-watersheds (excluding no-risk sub-watersheds) for each possible receptor. Water bodies (WB) are the most vulnerable receptors across the entire watershed and contribute to the majority of high risk scores. Residential land provides the next most vulnerable receptors especially in RR4, RR5, and R11 areas. In the downstream RR16 sub-catchment, the drinking water intake (DW) of Guanting Reservoir is most vulnerable to acute water pollution by heavy metal mine tailings ponds. Figure 5. Risk score by each receptor for sub-watersheds RR1-22 (excluding no-risk sub-watersheds). The abbreviations in the legend are as follows: RL is residential land; WB is water body; AL is agricultural land; WL is woodland; DW is drinking water intakes. Figure 5. Risk score by each receptor for sub-watersheds RR1-22 (excluding no-risk sub-watersheds). The abbreviations in the legend are as follows: RL is residential land; WB is water body; AL is agricultural land; WL is woodland; DW is drinking water intakes. 15278 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 3.5. Uncertainty Analysis During Watershed-scale Tailings-pond Pollution Risk Analysis, uncertainty could arise from the method itself, the choice of risk receptors, and the filters of exposure and effect. To represent sub-catchments at low, medium, and high risk, areas RR9, RR10, and RR4 are chosen for uncertainty and sensitivity analyses. Figure 7a–c presents the results of the uncertainty analysis. The distributions of the forecast are consistent with the assessment results, indicating that inherent uncertainty has not influenced the risk distribution. The wider range of the distribution implies a lower level of confidence in the risk forecast, for which RR9 (low risk region) has the highest value, and the uncertainty is higher for the upstream RR4 compared to the midstream. For RR4 and RR10, the frequency distributions are left-skewed, implying that the risk ranks may have been overestimated. Nevertheless, the distributions in RR9 have mean values that are almost the same as the risk scores, follow a normal curve, and so are estimated with a relatively accurate ranking. Generated by sensitivity analysis, correlation coefficients for risk sources, receptors, and filters in each sub-watershed are used to represent the impact of parameter sensitivity on the uncertainty of risk assessment. The higher the correlation coefficients, the greater contribution the factors make. The highest five correlation coefficients in areas RR9, RR10, and RR4 are shown in Figure 8a–c. In the low risk sub-watershed RR9, tailings pond T10 (0.37), and residential land (0.36) contribute most to the rank correlation, followed by receptors of tailings pond T20 (0.35) and water body (0.23). As for the medium risk area RR10, the effect filters account for the highest rank correlation. For RR4, effect filters generated the uncertainty. To sum up, the uncertainty for the three sub-catchments RR9, RR10, and RR4 mainly derives from tailings ponds and effect filters. 15279 15279 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 Figure 7. Uncertainty analysis result: risk probability distribution for region (a) RR9; (b) RR10; and (c) RR4. Figure 7. Uncertainty analysis result: risk probability distribution for region (a) RR9; (b) RR10; and (c) RR4. Figure 8. Rank correlation coefficients for different regions. The abbreviations on the y-axis relate to essential factors of assessment and are defined as follows: WB-RS and WB-WQ are effect filters of water body to residential safety and water quality, respectively; WB is water body; RL is residential land; T10 and T20 are mine tailings ponds; AL is agricultural land;. DW-EH is an effect filter of drinking water intake to ecosystem health. Figure 8. Rank correlation coefficients for different regions. The abbreviations on the y-axis relate to essential factors of assessment and are defined as follows: WB-RS and WB-WQ are effect filters of water body to residential safety and water quality, respectively; WB is water body; RL is residential land; T10 and T20 are mine tailings ponds; AL is agricultural land;. DW-EH is an effect filter of drinking water intake to ecosystem health. Figure 8. Rank correlation coefficients for different regions. The abbreviations on the y-axis relate to essential factors of assessment and are defined as follows: WB-RS and WB-WQ are effect filters of water body to residential safety and water quality, respectively; WB is water body; RL is residential land; T10 and T20 are mine tailings ponds; AL is agricultural land;. DW-EH is an effect filter of drinking water intake to ecosystem health. Figure 8. Rank correlation coefficients for different regions. The abbreviations on the y-axis relate to essential factors of assessment and are defined as follows: WB-RS and WB-WQ are effect filters of water body to residential safety and water quality, respectively; WB is water body; RL is residential land; T10 and T20 are mine tailings ponds; AL is agricultural land;. DW-EH is an effect filter of drinking water intake to ecosystem health. 15280 15280 4. Discussion Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA) is designed to evaluate the transferred and combined risks arising from multiple vulnerable receptors exposed to multiple mine tailings ponds at watershed-scale. WTPRA uses risk rankings to incorporate cascading and cumulative effects into a watershed-scale risk analysis. WTPRA leads to a better understanding of the complicated interrelationships between multiple tailings ponds, receptors, and impacts. Thereby, the risk-analysis at watershed-scale provides a realistic risk map of tailings pond pollution hazards, and the most risky tailings ponds and most vulnerable receptors. Besides combining multiple tailings ponds and receptors, the new approach also incorporates upstream pollution threats into the risk analysis of any sub-catchment, which was hardly achieved in previous studies (exceptions include [2,23,25]). WTPRA assesses each tailings pond by evaluating the combined risk summed for all risk routes over a distance of 10 s or 100 s of km; this is an improvement over existing techniques such as given by China MEP [32], which recommends using a combination of tailings pond hazard and receptor vulnerability up to 10 km downstream. Moreover, WTPRA provides significant data on breach width, maximum peak discharge, and temporal-spatial concentrations of pollutants in the stream-wise direction, using a combination of dam failure and pollutant convection-diffusion models. These quantitative data are helpful not only to screen a risk route and assign exposure filters, but also to develop a mitigation/emergency plan of point-to-point countermeasures in terms of locations, arrival times, and pollutant concentrations. Following the standardized process given by Liu et al. [25], WTPRA undertakes a six-step risk ranking procedure (see Section 2), in accordance with strict standards and criteria. Using WTPRA, the watershed risk related to acute water pollution of tailings ponds could be estimated and compared for different watersheds in a single exercise, following common ranking criteria. The Guanting Reservoir basin case study demonstrates that WTPRA is both operable and applicable. From the resultant risk map, sub-catchment areas RR11 and RR16 are at very high risk. RR11 is exposed to risk due to the proliferation of heavy metal mine tailings ponds, which could potentially release heavy metals and threaten the safety of local water bodies, residential, and agricultural land (see Figures 2 and 5). RR16 contains the largest receptors of Gutaning Reservoir, which is most susceptible to transferred pollution events upstream of the RR11 and RR9 areas, which could seriously endanger drinking water supply and ecosystem health (see Figures 5 and 6). 15280 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 4. Discussion The tributary sub-catchment areas RR5 and RR4 are at high risk, because many upstream and local tailings ponds pose acute pollution hazards to water bodies in the RR5 area (see Figure 2), and subsequently threaten a densely populated urban area (Qiaoxi District) and a main drinking water intake (D1) in RR4 (see Figure 5). Areas RR15 and RR10 are at medium risk of transferred pollution from the upstream reaches, RR8 is also at medium risk because of the presence of local tailings ponds. The low-risk sub-catchment areas are barely affected by tailings pond pollution events. The rest of the sub-catchment area is a no-risk region, mostly located in sub-catchments at the upstream reaches of Yang River and Sang-kan River where no heavy metal mine tailings ponds are situated. g g y g p The risk analysis results indicate that T4-T6 and T12 are the most hazardous tailings ponds due to high harmfulness, even though the dams are believed to be reliably controlled. Each pond has a storage capacity exceeding 0.5 million m3 with a dam at least 30 m high. T16 and T18 are also hazardous because of moderate harmfulness and medium control reliability, both of which correspond to an unsafe tailings pond. The other 16 tailings ponds are at low hazard because they are well managed and remain less harmful. T4-T6 and T12 are the most risky tailings ponds in the entire watershed because they are most hazardous and would have most impact should they fail (risk score >200). For the D1 drinking water intake, the simulation predicts that T12, T15, and T17-T19 are more hazardous, with the highest concentration of Cd exceeding four times the water quality standard (grade III) and a minimum arrival time of 26 h over the shortest distance of 19 km. For the D6 drinking water intake, T10 and T20 could cause events where the concentrations of Pb and Cd reach 4 and 10 times the standard in less time. For Guanting Reservoir, the more hazardous tailings ponds 15281 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 are T1, T2, T4-T6, T8-T10, and T20; in particular, T4 leads to the highest concentrations of pollutants (see Section 3.2). It would take somewhere between 89 and 107 h for contamination to arrive at the reservoir, once tailings pond water is released into the Yang River. 4. Discussion Based on the aforementioned analysis, countermeasures are recommended concerning the most affected areas, the most hazardous tailings ponds, and the most vulnerable receptors. For the entire watershed, priority is given to the high risk sub-catchment areas (RR4, RR5, RR11, and RR16) in terms of risk prevention and mitigation. Monitoring sections for early-warning systems are therefore suggested for the outlets of Qingshui River, Liuchuan River, and Longyang River, and upstream sections close to drinking water intakes (D1, D6, and Guanting Reservoir). Another measure would be to construct multiple cascades of intercept dams along larger river branches, such as the Liuchuan River, Longyang River, and mainstream, east branch, and middle branch of the Qingshui River. Preparation of an intercept dam involves site selection, storage of building materials (sand, stone, and concrete), and storage of intercepting materials (sandbags, cement pipes, and filter boxes of sodium sulphide, chlorinated lime, or active carbon). For major tailings ponds, the most important measure is to maintain the pond/dam so that it remains safe. T16 and T18 urgently require reinforcement. Proper risk management procedures and additional engineering buildings, cofferdams and accident pools, are recommended for all major tailings ponds. Emergency response measures such as emergency monitoring, pumping tailings fluid, and neutralizing pollutants, need to be planned and workable especially in T4-T6 and T12. It is also strongly suggested that detention ponds should be constructed (if the local topography is suitable) at inlets to the main river branches for ponds located close to Guanting Reservoir (i.e., T1, T2, T4-T6, T8-T10, and T20). For major receptors, noting the longer arrival time of pollutants, a sufficient response plan should be devised. Construction of a large detention pond is recommended at the upstream reach of sensitive receptors, particularly for D1, D6, and Guanting Reservoir. Corresponding storage of neutralizing chemicals and preparedness for emergency monitoring are needed in the case of detention pond use. It should be noted however, that WTPRA may have overestimated the risk in certain areas of the Guanting Reservoir Watershed, as indicated by the results of the uncertainty analysis. One reason for this is that the relatively low quality of data collected has not been properly represented by either the simulation process or risk analysis. It is quite possible that routine monitoring provided incorrect estimates of the concentrations of soluble heavy metal ions (e.g., Pb of 0.2 mg/L and Cd of 0.05 mg/L) and cyanide in tailings water. 4. Discussion Scarcity of daily hydrological data led to an annual format being used instead. It is recommended that a more comprehensive data collection campaign be conducted in the future. 5. Conclusions A WTPRA approach was proposed for risk analysis of mine tailings pond pollution at watershed-scale. The approach modified a previous watershed-scale accidental pollution risk assessment method and then customized it for mine tailings ponds. A set of common criteria was constructed to rank the hazards from different mine tailings ponds and the vulnerability of receptors. A combination of a dam failure model and an instantaneous water quality model was utilized to simulate the fate of chemically contaminated tailings fluid, and quantify the exposure probability. By embedding cascading effects and spatially cumulative effects, a comprehensive risk analysis was achieved for mine tailings pond pollution at a watershed-scale. The resultant risk map for the case study of the Guanting Reservoir basin indicated that the downstream sub-catchment and two tributary basins (i.e., Qingshui River and Longyang River) are at a higher risk than the midstream and upstream sub-catchments. The most hazardous mine tailings ponds are mainly concentrated in the mountainous areas of Chongli and Xuanhua. Tailings ponds T4-T6 and T12 pose greatest risk due to the higher hazard and more vulnerable receptors affected. The most vulnerable receptors involve the water environment, in particular Guanting Reservoir and the drinking water intakes, D1 and D6. Guanting Reservoir is exposed to the T1, T2, T4-T6, T8-T10, and T20 tailings ponds. Engineering 15282 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 (e.g., cofferdam, accident pool, interception dam, and detention pond) and management (monitoring, reinforcement, and emergency planning) countermeasures are required to address the most affected areas, the most hazardous tailings ponds, and the most vulnerable receptors. The analysis results provide useful information for risk planning and daily management of mine tailings ponds in terms of risk prevention and mitigation, incident-preparedness strategies, and early warning systems. Risk uncertainty in the WTPRA would be reduced by improving the quality of data collected. (e.g., cofferdam, accident pool, interception dam, and detention pond) and management (monitoring, reinforcement, and emergency planning) countermeasures are required to address the most affected areas, the most hazardous tailings ponds, and the most vulnerable receptors. The analysis results provide useful information for risk planning and daily management of mine tailings ponds in terms of risk prevention and mitigation, incident-preparedness strategies, and early warning systems. Risk uncertainty in the WTPRA would be reduced by improving the quality of data collected. Acknowledgments: This research was supported by the National Natural Science Foundation of China under grant No. 41271514. References 1. UNEP. A Guide to Tailings Dams and Impoundments: Design, Construction, Use and Rehabilitation; International Commission on Large Dams: Paris, France, 1996. 1. UNEP. A Guide to Tailings Dams and Impoundments: Design, Construction, Use and Rehabilitation; International Commission on Large Dams: Paris, France, 1996. 2. Komnitsas, K.; Kontopoulos, A.; Lazar, I.; Cambridge, M. Risk assessment and proposed remedial actions in coastal tailings disposal sites in Romania. Miner. Eng. 1998, 11, 1179–1190. [CrossRef] 2. Komnitsas, K.; Kontopoulos, A.; Lazar, I.; Cambridge, M. Risk assessment and proposed remedial actions in coastal tailings disposal sites in Romania. Miner. Eng. 1998, 11, 1179–1190. [CrossRef] 3. World Information Service on Energy Uranium Project. Chronology of Major Tailings Dam Failures. Available online: http://www.wise-uranium.org/mdaf.html (accessed on 25 November 2015). 3. World Information Service on Energy Uranium Project. Chronology of Major Tailings Dam Failu Available online: http://www.wise-uranium.org/mdaf.html (accessed on 25 November 2015). 4. Macklin, M.G.; Brewer, P.A.; Balteanu, D.; Coulthard, T.J.; Driga, B.; Howard, A.J.; Zaharia, S. The long term fate and environmental significance of contaminant metals released by the January and March 2000 mining tailings dam failures in Maramures County, upper Tisa Basin, Romania. Appl. Geochem. 2003, 18, 241–257. [CrossRef] 5. Vick, S.G. Tailings dam failure at Omai in Guyana. Min. Eng. 1996, 48, 34–37. 6. Hudson-Edwards, K.A.; Macklin, M.G.; Miller, J.R.; Lechler, P.J. Sources, distribution and storage of heavy metals in the Ro Pilcomayo, Bolivia. J. Geochem. Explor. 2001, 72, 229–250. [CrossRef] 7. Grimalt, J.O.; Ferrer, M.; Macpherson, E. The mine tailing accident in Aznalcóllar. Sci. Total Environ. 2009, 242, 3–11. [CrossRef] 8. Harder, L.F.J.; Stewart, J.P. Failure of Tapo Canyon Tailings Dam. J. Perform. Constr. Facil. 1996, 10, 109–114. 9. Azam, S.; Li, Q.R. Tailings dam failures: A review of last one hundred years. Geotech. News 2010, 28, 50–54. 9. Azam, S.; Li, Q.R. Tailings dam failures: A review of last one hundred years. Geotech. News 2010, 28, 10. Ministry of Environmental Protection (MEP China). 2015. Explanations of “Guide to Environmental Emergency Plan Making Of Mine Tailings Ponds (Exposure Draft)”. Available online: http://www. zhb.gov.cn/gkml/hbb/bgth/201406/t20140619_277178.htm (accessed on 20 May 2015). 11. State Administration of Work Safety (SAWS China). 2014. Mine Tailings Ponds. Available online: http://www.chinasafety.gov.cn/newpage/Contents/Channel_6494/2013/0902/218892/content_218892.htm (accessed on 25 November 2015). 12. Rico, M.; Benito, G.; Salgueiro, A.R.; Díez-Herrero, A.; Pereira, H.G. Reported tailings dam failures: A review of the European incidents in the worldwide context. J. Hazard. Mater. 2008, 152, 846–852. [CrossRef] [PubMed] 13. 5. Conclusions The authors are grateful to the local Environmental Protection Bureau and Hydrographic Office for assistance regarding the case study of Zhangjiakou, Hebei Province in China. Author Contributions: Renzhi Liu carried out the risk analysis and wrote the manuscript. Jing Liu completed the modeling and computation works. Zhijiao Zhang contributed to prepare data and methodology. Alistair G.L. Borthwick contributed to the risk analysis. Ke Zhang helped to present the methodology. All authors read and approved the final manuscript. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. References Pérez-López, R.; Sáez, R.; Álvarez-Valero, A.M.; Nieto, J.M.; Pace, G. Combination of sequential chemical extraction and modelling of dam-break wave propagation to aid assessment of risk related to the possible collapse of a roasted sulphide tailings dam. Sci. Total Environ. 2009, 407, 5761–5771. [CrossRef] [PubMed] 14. Kossoff, D.; Dubbin, W.E.; Alfredsson, M.; Edwards, S.J.; Macklin, M.G.; Hudson-Edwards, K.A. Mine tailings dams: Characteristics, failure, environmental impacts, and remediation. Appl. Geochem. 2014, 51, 229–245. [CrossRef] 15. Edwards, R. Toxic sludge flows through the Andes. New Sci. 1996, 152, 4. 16. Simón, M.; Ortiz, I.; García, I.; Fernández, E.; Fernández, J.; Dorronsoro, C.; Aguilar, J. Pollution of soils by the toxic spill of a pyrite mine (Aznalcollar, Spain). Sci. Total Environ. 1999, 242, 105–115. [CrossRef] 15283 Int. J. Environ. Res. Public Health 2015, 12, 15269–15284 17. Simón, M.; Martín, F.; Ortiz, I.; García, I.; Fernández, J.; Fernández, E.; Dorronsoro, C.; Aguilar, J. Soil pollution by oxidation of tailings from toxic spill of a pyrite mine. Sci. Total Environ. 2001, 279, 63–74. [CrossRef] 18. Macklin, M.G.; Payne, I.; Preston, D.; Sedgwick, C. Review of the Porco Mine Tailings Dam Burst and Associated Mining Waste Problems, Pilcomayo Basin, Bolivia. Report to UK Overseas Development Association. Unpublished work. 1996. 19. Hudson-Edwards, K.A.; Macklin, M.G.; Jamieson, H.E.; Brewer, P.A.; Coulthard, T.J.; Howard, A.J.; Turner, J. The impact of tailings dam spills and clean-up operations on sediment and water quality in river systems: The Ríos Agrio-Guadiamar, Aznalcóllar, Spain. Appl. Geochem. 2003, 18, 221–239. [CrossRef] 20. Liu, H.; Probst, A.; Liao, B. Metal contamination of soils and crops affected by the Chenzhou lead/zinc mine spill (Hunan, China). Sci. Total Environ. 2005, 339, 153–166. [CrossRef] [PubMed] 21. Rico, M.; Benito, G.; Díez-Herrero, A. Floods from tailings dam failures. J. Hazard. Mater. 2008, 154, 79–87. [CrossRef] [PubMed] 22. Mayes, W.M.; Jarvis, A.P.; Burke, I.T.; Walton, M.; Feigl, V.; Klebercz, O.; Gruiz, K. Dispersal and attenuation of trace contaminants downstream of the Ajka bauxite residue (red mud) depository failure, Hungary. Environ. Sci. Technol. 2011, 45, 5147–5155. [CrossRef] [PubMed] 3. Xenidis, A.; Papassiopi, N.; Komnitsas, K. Carbonate-rich mining tailings in Lavrion: Risk assessment proposed rehabilitation schemes. Adv. Environ. Res. 2003, 7, 479–494. [CrossRef] 24. Su, C.L.; Yu, Y.C.; Chang, Y.F. Method of environmental risk assessment on tailings ponds. Environ. Eng. 2009, 27, 74–77. 25. Liu, R.Z.; Zhang, K.; Zhang, Z.J.; Borthwick, A.G.L. References Watershed-scale environmental risk assessment of accidental water pollution: The Case of Laoguan River, China. J. Environ. Inform. 2015, under review. 26. Landis, W.G.; Wiegers, J.A. Design considerations and a suggested approach for regional and comparative ecological risk assessment. Hum. Ecol. Risk Assess. 1997, 3, 287–297. [CrossRef] 27. Wiegers, J.K.; Feder, H.M.; Mortensen, L.S.; Shaw, D.G.; Wilson, V.J.; Landis, W.G. A regional multiple-stressor rank-based ecological risk assessment for the Fjord of Port Valdez, Alaska. Hum. Ecol. Risk Assess. 1998, 4, 1125–1173. [CrossRef] 28. Environmental Protection Agency (US EPA). Framework for Cumulative Risk Assessment. EPA/630/P-0 US EPA: Washington, DC, USA, 2003. g 29. DoE, U.K. A Guide to Risk Assessment and Risk Management for Environmental Protection; Department of the Environment HMSO: London, UK, 1995. 30. Jenson, S.K.; Domingue, J.O. Extracting topographic structure from digital elevation data for geographic information system analysis. Photogramm. Eng. Remote Sens. 1988, 54, 1593–1600. 31. Liu, R.Z.; Borthwick, A.G.L.; Land, D.D.; Zeng, W.H. Environmental risk mapping of accidental pollution and its zonal prevention in a city. Process Saf. Environ. Prot. 2013, 91, 397–404. [CrossRef] 32. Ministry of Environmental Protection (China MEP). Technical Guideline for Environmental Risk Assessment of Tailings Pond; China MEP: Beijing, China, 2015. 33. State Environmental Protection Agency (China SEPA). Environmental Quality Standards for Surface Water; China SEPA: Beijing, China, 2002. 34. State Council of P.R.C. (SC). The Natural Reserve Regulations of P.R. China; China Legal Press: Beijing, China, 1994. 35. Singh, V.P. Dam Breach Modeling Technology; Springer Science & Business Media: Dordrecht, The Netherlands, 1996. 36. Xu, Y.Y.; Qiao, Y.A. Several problems on dam breach numerical calculation. Yellow River 1983, 6, 30–33. (In Chinese) 37. Li, W. Hydraulics Reckoner, 2nd ed.; China Water and Power Press: Beijing, China, 2006. 37. Li, W. Hydraulics Reckoner, 2nd ed.; China Water and Power Press: Beijing, China, 2006. © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). 15284
https://openalex.org/W4306716155
https://zenodo.org/records/7220226/files/EJSSPC1135.pdf
Kirghiz, Kyrgyz
null
AFFIKSOIDLARNING TIL MORFEMIK-MORFOLOGIK TIZIMDA TUTGAN O'RNI
Zenodo (CERN European Organization for Nuclear Research)
2,022
cc-by
1,659
Innovative Academy Research Support Center UIF = 8.2 | SJIF = 6.051 www.in-academy.uz EURASIAN JOURNAL OF SOCIAL SCIENCES, PHILOSOPHY AND CULTURE AFFIKSOIDLARNING TIL MORFEMIK-MORFOLOGIK TIZIMDA TUTGAN O’RNI Shoniyozova Gulshoda Qarshi davlat universiteti 2-kurs magistranti https://doi.org/10.5281/zenodo.7220226 ARTICLE INFO ABSTRACT Received:27th September 2022 Accepted: 10th October 2022 Online: 18th October 2022 Mazkur maqolada affiksoidlarning til morfemik- morfologik tizimda tutgan o’rni haqida fikr-mulohazalar bildirildi va misollar bilan tahlil qilindi. KEY WORDS affiksoid, fors-tojik, yevropa, izohli lug'at, avto, anti, makro,gidro Innovative Academy Research Support Center UIF = 8.2 | SJIF = 6.051 www.in-academy.uz EURASIAN JOURNAL OF SOCIAL SCIENCES, PHILOSOPHY AND CULTURE AFFIKSOIDLARNING TIL MORFEMIK-MORFOLOGIK TIZIMDA TUTGAN O’RNI Shoniyozova Gulshoda Qarshi davlat universiteti 2-kurs magistranti https://doi.org/10.5281/zenodo.7220226 ARTICLE INFO ABSTRACT Received:27th September 2022 Accepted: 10th October 2022 Online: 18th October 2022 Mazkur maqolada affiksoidlarning til morfemik- morfologik tizimda tutgan o’rni haqida fikr-mulohazalar bildirildi va misollar bilan tahlil qilindi. KEY WORDS affiksoid, fors-tojik, yevropa, izohli lug'at, avto, anti, makro,gidro ABSTRACT Mazkur maqolada affiksoidlarning til morfemik- morfologik tizimda tutgan o’rni haqida fikr-mulohazalar bildirildi va misollar bilan tahlil qilindi. Received:27th September 2022 Accepted: 10th October 2022 Online: 18th October 2022 ma‘noga ega: -chi soʻz yasovchi, -lar koʻplik, -ga kelishik va h.k. Ammo ular bajaradigan vazifasiga koʻra ikki turga boʻlinadi: 1. Soʻz yasovchi qoʻshimchalar. 2 Shakl yasovchi qoʻshimchalar Tilshunoslikda oraliq uchinchi deb nomlangan birliklar bor. Bunday birliklarga yordamchi so‘zlar, affiksoidlar kiradi. Affiksoidlar ham morfemikaning, ham morfologiyaning ham birligi hisoblanadi. Affiksoidlar so‘zmi yoki qo‘shimchami degan muhokamalar tilshunoslar o‘rtasida juda ko‘p bo‘ldi. Keyinchalik ularning o‘ziga alohida “affiksoid” deb nom berishdi. Affiksoidlar jahon tilshunosligida ham o‘z o‘rniga ega. Boshqa tillarda ham bu tushuncha mavjud. ma‘noga ega: -chi soʻz yasovchi, -lar koʻplik, -ga kelishik va h.k. Ammo ular bajaradigan vazifasiga koʻra ikki turga boʻlinadi: g g 1. Soʻz yasovchi qoʻshimchalar. 2. Shakl yasovchi qoʻshimchalar. 2. Shakl yasovchi qoʻshimchalar. Yangi leksik ma‘noli soʻz hosil qiladigan qoʻshimchalar soʻz yasovchi qoʻshimchalar deyiladi: ish+la, ish+chi, kurs+dosh. Soʻzning grammatik ma‘nosini hosil qiluvchi qoʻshimchalar shakl (forma) yasovchi qoʻshimchalar deyiladi: gullarga soʻzidagi -lar koʻplik ma‘nosini, -ga kelishik (joʻnalish) ma‘nosini hosil qilayotgan shakllardir. Ishlamayapti soʻzida -ma inkor, -yap zamon, -ti shaxs -son ma‘nolarini ifodalayapti. Soʻz yasovchi qoʻshimchalar soʻzning material qismiga, leksik ma‘no ifodalovchi qismiga kiradi. Shakl yasovchilar esa soʻzning formal qismida boʻladi: Masalan: terimchilarga soʻzida terimchi-material qism, -larga formal qism -soʻz shakli hisoblanadi. Ba‘zi soʻzlar qoʻshimcha vazifasini bajarib, ko‘makchi morfemaga aylana boshlagan boʻlsa ham, hali qoʻshimchaga aylanib yetmagan boʻladi. Bular affiksoid sanaladi. Masalan, Bu uyda toʻrt xona bor. Biz ishxonaga bordik. Misollardagi xona elementi oʻrni bilan soʻz boʻlib ham, qoʻshimcha boʻlib ham qoʻllangan. U bir oʻrinda oʻzak morfema, boshqa oʻrinda ko‘makchi morfema. Keyingi holda oʻrin bildiradigan qoʻshimchaga juda yaqin. -Jon, -xon, -oy elementlari ham xuddi shunday: jon qizlar-qizlarjon, jonim otam-otajonim kabi. Qoʻshimchalarning har biri oʻziga xos Affiksoidlarni ko‘makchi morfema ham, yetakchi morfema ham deya olmaymiz, ammo morfemikada o‘rganamiz. Affiksoidlarda ikkalsining ham ma’nosi Volume 2 Issue 11, October 2022 ISSN 2181-2888 Volume 2 Issue 11, October 2022 Volume 2 Issue 11, October 2022 Page 173 www.in-academy.uz - so`z yasashda faqat so`z yasalish vazifasini bajarish; - so`z yasashda faqat so`z yasalish vazifasini bajarish; - so`z yasashda faqat so`z yasalish vazifasini bajarish; saqlangan. So‘zlarni morfemik tahlil qilishda affiksoilarga alohida e’tibor berish kerkkki, ular tahlil muhim qismini tashkil etadi. - belgilangan namuna bo'yicha muntazam takror ishlab chiqarish va so'z yasash; - faqat bog'langan shaklda ko'paytirish. Morfologik jihatdan o‘rganish affiksoidlarni turli tomonlarini ochib beradi. Chunki affiksoidli yasalmalar va ularning turkumi masalasi ham muhimdir.Masalan, ot turkumi leksemasiga iliq munosabat ifodalovchi -jon, -boy (- voy), -xon, -oy affiksoidlari qo’shiladi: buvijon, Olimjon, Ravshanboy, Komilaxon, Тursunoy kabi. Bu affiksoidlar ayrim kishi atoqli otlarida ularning doimiy tarkibiy qismi sifatida qatnashadi: Oyxon, O‘g‘iloy Affiksoidlarni o‘rganish, ularni tadqiq qilish jahon tilshunosligining ham muhim vazifalaridandir. Bu vazifaning muhimligi quyidagilarda ko‘rinadi. Affiksoidlarni o‘rganish, ularni tadqiq qilish jahon tilshunosligining ham muhim vazifalaridandir. Bu vazifaning muhimligi quyidagilarda ko‘rinadi. - affiksoid morfemalarning so’z yasalish tizimidagi o’rni va mavqeini aniqlash; - affiksoid morfemalarning tasnifi va farqlanishi; www.in-academy.uz qaratilgan. Rus tadqiqotchisi Olga Rusakova o‘z tadqiqotida to’rtta lug‘atdan olingan prefiksoidlar va suffiksoidlarga asoslangan: qaratilgan. Rus tadqiqotchisi Olga Rusakova o‘z tadqiqotida to’rtta lug‘atdan olingan prefiksoidlar va suffiksoidlarga asoslangan: bajaradi, muntazam xarakterga ega, rus tilidagi tegishli ildizlar bilan oʻzining semantik va genetik aloqalarini saqlaydi. So‘z elementlarining affiksoid morfemalar sinfiga o’tishi bir necha bosqichlarni o’z ichiga oladi: 1) asl o’zak bilan irsiy va (yoki) semantik aloqalarni u yoki bu darajada saqlab qolgan holda manoning qisman yo’qolishi; 2) affikslarning vazifalarini egallash; 3) ushbu elementlar bilan muntazam hosilaviy modellarni shakllantirish; 4) affikslarga sinonim sifatida yangi so’zlarni yaratishda qo’llanilishi; bajaradi, muntazam xarakterga ega, rus tilidagi tegishli ildizlar bilan oʻzining semantik va genetik aloqalarini saqlaydi. So‘z elementlarining affiksoid morfemalar sinfiga o’tishi bir necha bosqichlarni o’z ichiga oladi: 1) asl o’zak bilan irsiy va (yoki) semantik aloqalarni u yoki bu darajada saqlab qolgan holda manoning qisman yo’qolishi; 2) affikslarning vazifalarini egallash; 3) ushbu elementlar bilan muntazam hosilaviy modellarni shakllantirish; 4) affikslarga sinonim sifatida yangi so’zlarni yaratishda qo’llanilishi; 1. "Rus tilining izohli lug'ati" S.I. Ozhegova, N.Yu. Shvedova; 2. "Rus tilining katta tushuntirish lug‘ati" S.A. Kuznetsov; 3. "Rus tilining teskari lug'ati" M.S. Sheveleva; 4. "Rus tilining mashhur lug‘ati" A.P. Guskova, B.V. Sotina. Affiksoidlar bo‘yicha tadqiqotlar quyidagi vazilarni bajarishi kerak: affiksoidlarning morfemik va hosila tizimidagi holatini ochib berish; - affiksoidlar va o’zaklar, old qo’shimchalar va qo’shimchalar, qo’shimchalar va qo’shimchalar bir qator jihatlari bilan o’xshash va farqlanadi: so’z yasashdagi ahamiyati; haqiqiy qiymat mavjudligi bilan; leksemaning barcha so’z shakllarini yasashda ishtirok eta olishi, morfemaning bo’linmasligi (o’tmasligi) bilan; grammatik ma'noning mavjudligi bilan; so‘zdagi funksiya bo‘yicha; Affikslarga oid tadqiqotlarni ma’no- mazmuniga ko‘ra guruhlarga bo‘lish mumkin. - derivatsiya asoslariga oid fundamental ishlar (I. S. Uluxanov, E. S. Kubryakova, V. V. Lopatin, V. N. Nemchenko, V. V. Vinogradov va boshqalar); ishlar (I. S. Uluxanov, E. S. Kubryakova, V. V. Lopatin, V. N. Nemchenko, V. V. Vinogradov va boshqalar); - affiksoidlarni quyidagi qoidalar asosida tasniflash mumkin: - so‘zning morfemik tuzilishining muammoli elementlariga bag‘ishlangan asarlar (A.N.Tixonov, E.A.Zemskaya, V.G.Vinokur, N.M.Shanskiy va boshqalar); Affiksoidlarni tildagi tizimlilik nuqtai nazaridan, hosil qiluvchi o’zakli shakl va semantik ichki valentlik qoliplarini hisobga olgan holda o’rganish zarur. - hosilalanishning yo’nalishlari va xossalarini o’rganish (D.Kastovskiy, G.Booyj, I.Kenesey, T.Leyshner K.Askoop, X.L.Jr.Smit va boshqalar); - hosilalanishning yo’nalishlari va xossalarini o’rganish (D.Kastovskiy, G.Booyj, I.Kenesey, T.Leyshner K.Askoop, X.L.Jr.Smit va boshqalar); Tanlangan tamoyillar asosida ushbu talablarga javob beradigan elementlar guruhi aniqlanadi. O’zak morfema, affiksoid va affikslar tahlili o’tkazilib, ularning o’xshash va farqli tomonlari aniqlandi. - affiksoidlarning lug‘atini yaratish. - affiksoidlarning lug‘atini yaratish. Bu masalalar hali ham o’z yechimini topmagan bo’lib, tadqiqot muammolarini shakllantirishni belgilab beradi: o’zak, affiksoid va affikslarning korrelyatsiyasi va farqlanishi; affiksoidlarning tasnifi, ildizlarning affikslarga o‘tish bosqichlari va boshqalar. Ushbu muammolarni hal qilish tillarning so‘z yasalish tizimining dinamik tabiati, uning ochiqligi va o‘zgaruvchanligi bilan chambarchas bog‘liqligi haqidagi g‘oyalarni kengaytiradi va chuqurlashtiradi. Affikslarni tadqiqi qilish orqali bir necha yangiliklar qilish mumkin. - bu elementlar eng yangi voqelikni nomlash uchun zarur bo'lgan terminologik va kundalik lug‘atni yaratishda qo'llaniladi, shuning uchun ularni o‘rganish tilga ekstralingvistik ta'sir kuchini aniqlash imkonini beradi; Bu masalalar hali ham o’z yechimini topmagan bo’lib, tadqiqot muammolarini shakllantirishni belgilab beradi: o’zak, affiksoid va affikslarning korrelyatsiyasi va farqlanishi; affiksoidlarning tasnifi, ildizlarning affikslarga o‘tish bosqichlari va boshqalar. Ushbu muammolarni hal qilish tillarning so‘z yasalish tizimining dinamik tabiati, uning ochiqligi va o‘zgaruvchanligi bilan chambarchas bog‘liqligi haqidagi g‘oyalarni kengaytiradi va chuqurlashtiradi. Affikslarni tadqiqi qilish Affiksoidlarni leksikologik nuqtayi nazardan yondashib o‘rganish ham mumkin. Chunki affiksoidlarni ma’nosi, ularning qaysi qatlamga tegishli ekanligi, kirib kelishining ekstralingvistik omillari bemalol affiksoidlar haqidagi tadqiqotlar ning predmeti bo‘lishi mumkin. Ko‘makchi yoki yetakchi morfema affiksoidlarga oʻtganda quyidagi oʻzgarishlar yuz beradi: - ma'noning qisman yo'qolishi, ko'p yoki kamroq darajada asl ildiz bilan genetik va / yoki semantik aloqalarni saqlab qolish; - bu elementlar eng yangi voqelikni nomlash uchun zarur bo'lgan terminologik va kundalik lug‘atni yaratishda qo'llaniladi, shuning uchun ularni o‘rganish tilga ekstralingvistik ta'sir kuchini aniqlash imkonini beradi; - affikslarning so’z yasalish vazifasini bajarish; - mavjud model bo'yicha ko'payish muntazamligini oshirish; - affiks yoki iboralar orasida sinonimlarni olish; - affiksoidlar, har biri oʻziga xos darajada, oʻzak va affikslarning konvergent va divergent xususiyatlariga ega, shuning uchun ularni oʻrganish intralingvistik qonuniyatlar ishining oqibatlarini koʻrish imkonini beradi; Keyinchalik elementlarning affikslarga aylanishi quyidagi jarayonlar bilan birga keladi: - asl yetakchi morfema bilan semantik va genetik aloqalarni to'liq yo'qotish; Tadqiqot uchun material tanlashning asosiy printsipi leksikografik manbalardagi belgilar bo‘lib, yangi so‘zlar va ma’nolar lug‘atlarining birliklariga alohida e’tibor - tilda faqat affiks vazifasini bajaradi, ya'ni. mustaqil so'zlar orasida omonimlarning yo'qligi; ISSN 2181-2888 Page 174 www.in-academy.uz Affiksoidlarni turli asoslarga ko‘ra tasniflash amalga oshirilgan. Bir tomondan, affiksoidlar o’zak morfemalarga o’xshash bo’lsa, ikkinchi tomondan, ular bilan farqlari mavjud bo’lib, affiksoidlarni alohida mustaqil morfemalar guruhiga ajratib, ularni o’zak bilan farqlash imkonini beradi. - lingvistik atamalar lug‘atlari (O.S. Axmanovaning "Tilshunoslik terminlari lug'ati", V.N. Nemchenkoning "Morfemik atamalarning asosiy tushunchalari: qisqacha ma'lumotnoma lug‘ati", "Morfemik atamalar tezaurusi. Lug‘at- ma’lumotnoma". Tuzuvchi M.S. Zaychenkova , X.A. Baranova va boshqalar). Affiksoidlar oʻziga xos sifat va xossalarga ega boʻlgan morfemalaridir: ular real maʼno tashuvchisi, soʻz yasalish vazifasini ISSN 2181-2888 Page 175 References: 1. Сенько Е. В. Префиксоиды как сложившаяся система современного русского словообразования // Современные проблемы науки и образования, № 6, 2014. Владикавказ. 2. Аффиксоиды, полуаффиксы и аффиксы в научном стиле и литературной норме: Сб.статей. // Под ред. Ознобихина H.A. - Владивосток: ДВНЦ АН СССР, 1980.-175 с. 2. Аффиксоиды, полуаффиксы и аффиксы в научном стиле и литературной норме: Сб.статей. // Под ред. Ознобихина H.A. - Владивосток: ДВНЦ АН СССР, 1980.-175 с. 3 Григорян Э А Суффиксоиды в системе современного русского языка: автореф дис Сб.статей. // Под ред. Ознобихина H.A. Владивосток: ДВНЦ АН СССР, 1980. 175 с. 3. Григорян Э.А. Суффиксоиды в системе современного русского языка: автореф. дис. ... канд. филол. наук: 10.02.01 / Э.А.Григорян - М., 1981. -24 с. 3. Григорян Э.А. Суффиксоиды в системе современного русского языка: автореф. дис. ... канд. филол. наук: 10.02.01 / Э.А.Григорян - М., 1981. -24 с. 4. Лопатин В.В. Аффиксоид / В.В. Лопатин // Русский язык: Энциклопедия. 5. М.: Советская энциклопедия, 1979. - С. 26-27. 6. Лопатин В.В. Аффиксоид / В.В. Лопатин / Русский язык: Энциклопедия / Гл. ред. Ю.Н. Караулов. Большая Российская энциклопедия. - М.: Дрофа, 2008,-С. 721. 6. Лопатин В.В. Аффиксоид / В.В. Лопатин / Русский язык: Энциклопедия / Гл. ред. Ю.Н. Караулов. Большая Российская энциклопедия. - М.: Дрофа, 2008,-С. 721. Page 176
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SOD3 Decreases Ischemic Injury Derived Apoptosis through Phosphorylation of Erk1/2, Akt, and FoxO3a
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Abstract Competing Interests: The authors have declared that no competing interests exist. * E-mail: mikko.laukkanen@utu.fi Introduction increased growth factor expression [8] that partially elucidate the SOD3-mediated survival effect. Since the increased proliferation alone may not adequately explain the therapeutic effects caused by SOD3 and, more importantly, since previous studies have shown significantly decreased apoptosis after sod3 overexpression [7,9], we focused in the present work on the mechanisms of SOD3-mediated reduced apoptosis in cardiovascular ischemia. Tissue ischemia induces rapid generation of reactive oxygen species (ROS) including superoxide (O2 2N), hydrogen peroxide (H2O2), and their derivatives, which along with acute lack of nutrient supply and disturbed cellular respiration cause severe damage to tissues. Extracellular superoxide dismutase (SOD3) is an antiox- idative enzyme that converts superoxide into hydrogen peroxide thereby reducing oxidative cell stress [1,2]. The enzyme is secreted to extracellular space where it reversibly binds to cell membrane at lipid rafts and therefore has a local impact on inactivation of phosphotyrosine phosphatases PTP1B and DEP1 [3]. In prolonged disease conditions, such as coronary artery disease, sod3 expression is decreased in a time-dependent manner [4–6] suggesting that the lack of the enzyme could deteriorate the condition. This is further supported by the data showing that sod3 overexpression has beneficial effects on the healing of cardiovascular injuries [7–10]. We have recently shown SOD3 to have a pro-proliferative effect in ischemic skeletal muscle, which is caused by SOD3-derived activation of the Ras-Erk1/2 mitogenic pathway and consequent Based on our data, sod3 overexpression caused activation of Erk1/2 and Akt pathways involving cytoplasmic entry of FoxO3, increased miR-21 production, and decreased BCL-2 interacting mediator of cell death (bim) mRNA synthesis. The study suggests an important role for SOD3 in regulation of cellular signaling networks and a central impact on reduced injury development and apoptosis. Lilja E. Laatikainen1, Mariarosaria Incoronato2, Maria Domenica Castellone3, Juha P. Laurila1, Massimo Santoro3, Mikko O. Laukkanen1,2* 1 University of Turku, Medicity Research Laboratory, Turku, Finland, 2 Fondazione IRCCS SDN, Naples, Italy, 3 Institute of Experimental Endocrinology and Oncology (CNR), c/o Department of Biology and Cellular and Molecular Pathology, University of Naples Federico II, Naples, Italy SOD3 Decreases Ischemic Injury Derived Apoptosis through Phosphorylation of Erk1/2, Akt, and FoxO3a Lilja E. Laatikainen1, Mariarosaria Incoronato2, Maria Domenica Castellone3, Juha P. Laurila1, Massimo Santoro3, Mikko O. Laukkanen1,2* Abstract Background: Extracellular superoxide dismutase (SOD3), which dismutates superoxide anion to hydrogen peroxide, has been shown to reduce the free radical stress derived apoptosis in tissue injuries. Since both superoxide anion and hydrogen peroxide have a marked impact on signal transduction pathways and could potentially explain a number of apoptosis and survival -related phenomena in different pathological conditions, we clarified the impact of SOD3 on Akt and Erk1/2 cell survival pathways in rat hind limb injury model. Methodology and Principal Findings: Based on our data, the hind limb ischemic rats treated with virally delivered sod3 have milder injury and less apoptosis than control animals that could be due to parallel activation of pro-proliferative and anti-apoptotic Erk1/2 and Akt pathways. The common downstream factor of both signaling pathways, the apoptosis related forkhead box protein O3a (FoxO3a), was phosphorylated and translocated to the cytoplasm in sod3 treated tissues and cell line. Additionally, we obtained increased mRNA production of elk-1, ets-1, and microRNA 21 (miR-21), whereas synthesis of bim mRNA was decreased in sod3 overexpressing tissues. We further showed that overexpression of sod3 modulated redox related gene expression by downregulating nox2 and inos when compared to injured control animals. Conclusions and Significance: The study shows the complexity of SOD3-derived effects on tissue injury recovery that are not limited to the reduction of superoxide anion caused cellular stress but highlights the impact of SOD3 related signal transduction on tissue functions and suggests an important role for SOD3 in attenuating cell stress effects in different pathological conditions. , Incoronato M, Castellone MD, Laurila JP, Santoro M, et al. (2011) SOD3 Decreases Ischemic Injury Derived Apoptosis through 2, Akt, and FoxO3a. PLoS ONE 6(8): e24456. doi:10.1371/journal.pone.0024456 Editor: Shawn B. Bratton, The University of Texas at Austin, United States of America Editor: Shawn B. Bratton, The University of Texas at Austin, United States of America Received May 16, 2011; Accepted August 10, 2011; Published August 31, 2011 Copyright:  2011 Laatikainen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was supported by Fondazione SDN (decision number RC2010-M-0001, http://www.sdn-napoli.it/) and Academy of Finland (decision number 141136, http://www.aka.fi/en-GB/A/Centres-of-Excellence-/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Rat hind limb ischemia model Acute ischemic hind limb injury was induced in male Fischer 344 rats (5–6 weeks, 86–115g) by surgical ligation of distal femoral PLoS ONE | www.ploson August 2011 | Volume 6 | Issue 8 | e24456 PLoS ONE | www.plosone.org 1 SOD3-Regulated Apoptosis artery, lateral circumflex femoral artery and proximal femoral artery. The procedure was performed under anesthesia by single intraperitoneal injection of fentanyl fluanisone (370 mg/100 g; Janssen Pharmaceutica, Beerse, Belgium), and midazolame (180 mg/100 g; Roche, Basel, Switzerland). Adequacy of the anesthesia was determined based on the reactions of the animal during the surgery. Animals were recovering from the anesthesia in a separate pre-warmed environment. Immediately after ligation adenoviral vectors carrying rabbit sod3 or LacZ control genes, both 0.56109 pfu in 50 ml PBS, were injected at 5 sites into the hind limb muscles before suturing the wound. Uninjured muscle was used as a control. The animals were followed for 3, 7 and 10 days (4 animals in normal control, LacZ and SOD3 groups each). All animal procedures were approved by the Southern Finland Regional Experimental Animal Committee (License STH350A), and done according to the European Commission and University of Turku guidelines. Immunohistochemistry The thigh muscles were cut crosswise, snap frozen in 2- methylbutane and embedded in Tissue-Tek Optimal Cutting Temperature compound (Sakura Finetek, Torrance, CA, USA). Ten micrometer cryosections were fixed in acetone and stained with hematoxylin/eosin (Sigma, St. Louis, MI, USA) according to the standard protocol, and photographed digitally with Zeiss Axiovert 200 M microscope and the AxioVision program (Carl Zeiss, Oberkochen, Germany). The injured area as percentage of the whole section was determined from 7 sections per group independently by three investigators using inflammatory cell invasion, increased connective tissue formation, and fragmentation of the muscle fibers as criteria for injury analysis. The injured muscle tissue area was calculated by determining the area (%) of the tissue section containing inflammatory cells or morphological damages as compared to inflammatory cell free tissue or tissue that did not show muscle fiber fragmentation of connective tissue. The final injured region was calculated from triplicate analyses (the analysis of three investigators). SOD3 attenuates ischemic injury Previously SOD3 has been shown to have growth regulatory [8], anti-inflammatory [11], anti-oxidative [2], and anti-apoptotic [7,9] characteristics. Since the latter is not well characterized, in the present study we focused on sod3 overexpression-mediated cellular signaling events leading to decreased apoptotic signaling in ischemic tissue injury. Real-time quantitative PCR q Total RNA was extracted from pooled muscle samples of each animal group with Tri-reagent (Sigma). Complementary DNA synthesis was done with Revert-Aid M-MuLV (Fermentas, Burlington, Canada) and the quantitative PCR with SYBR Green master mix reagent (Applied Biosystems, Foster City, CA, USA). Primers were: rat beta-actin forward 59-TCGTGCGTGACAT- TAAGGAG-39 and reverse 59-GTCAGGCAGCTCGTAGC- TCT-39; endogenous rat sod3 forward 59-GAC CTG GAG ATC TGG ATG GA-39 and reverse 59-GTG GTT GGA GGT GTT CTG CT-39; exogenous rabbit sod3 forward 59-GTT GCG TGA GCG GAA AGA TG-39 and reverse GTG AGC GCC TGC CAG ATC TC; nox2 forward 59-TTG TTG CAG GAG TGC TCA TC-39 and reverse 59-CTG CCA GCA GGT AGA TCA CA-39; inos forward 59-GGT GCA GAA GCA CAA AGT CA-39 and reverse 59-GAA CTG GGG GAA ACC ATT TT-39; elk-1 forward 59-AGC GGC CAG AAG TTT GTC TA-39 and reverse 59-CTG TCA TTC CTG CAC CCT TT-39; ets-1 forward 59- GAA ATG ATG TCC CAG GCA CT-39 and reverse 59-CTT TAC CCA GGG CAC ACA GT-39; bim forward 59-ATC TCA GTG CAA TGG CTT CCA-39 and reverse 59-GCT CCT GTG CGA TCC GTA TC-39; miR21 and RNU5 miScript Primer Assays (Qiagen, Hilden, Germany) were used to study the amplification and to normalize the miR-21 expression. Western blot analysis Pooled rat muscle tissue from each group was homogenized with a Retsch MM400 mixer mill using metal beads (Retsch GmbH, Haan, Germany) in lysis buffer (50 mmol/l HEPES pH 7.5, 150 mmol/l NaCl, 10% glycerol, 1% Triton X-100, 1 mmol/l MgCl, 10 mmol/l NaF, 10 mmol/l sodium pyrophos- phate, 1 mmol/l Na3VO4, 10 mmol/l approtinin, 10 mg/ml leupeptin) (Sigma). Antibodies for cleaved caspase-3 (Asp175), p- Akt (Ser473), Akt, p-Erk1/2 (Trh202/Tyr204), Erk1/2, p-FoxO3a (Ser318/321), p-FoxO3a (Thr32), tubulin (Cell signaling, Danvers, MA, USA), and SP-1 (Santa Cruz, Santa Cruz CA, USA) were used to detect the designated proteins from the blotted samples. To justify that the in vivo model used in the study is applicable for the present aims we first determined the relative sizes of injured tissue areas from the histological cryo sections. We observed significantly smaller injury regions in sod3-treated animals as compared to control rats on 3-day (53% lower value, p,0.05) and on 7-day (40% lower value, p,0.05) time points (Figure 1A-C). To further characterize the effect of SOD3 and to verify whether the enzyme has an impact on modulating apoptosis in our model, we performed a cleaved caspase-3 Western blot that showed increased apoptotic activity in lacz control animals as compared to sod3- treated rats at 3-day and at 7-day time points (Figure 1D). Statistical analyses The experiments were repeated at least three times. All results are expressed as mean 6SD. The p-values (* = p,0.05, ** = p,0.01, *** = p,0.001) were determined by one-way Anova with Tukey-Kramer multiple comparison post-analysis test. Cell culture and cell fractionation The left Y-axis refers to relative endogenous sod3 and the right Y-axis relative transgene sod3 expression. (F) Ischemic injury caused significantly (p,0.001) increased nox2 mRNA expression as compared to normal uninjured control animals. Sod3 overexpression attenuated the increase causing a significant (p,0.01 (**)) reduction of nox2 expression as compared to 3-day LacZ control animals. (G) Injury-related increased (p,0.001 (***)) inos expression was significantly (p,0.001 (***) decreased by sod3 expressing tissues. doi:10.1371/journal.pone.0024456.g001 Figure 1. SOD3 overexpression affects tissue injury development and modifies redox enzyme expression. (A) Sod3 transduced ischemic muscle tissues had significantly lower injury score at 3-day (p,0.05 (*)) and at 7-day (p,0.05 (*)) time points. White bars refer to lacz control animals and black bars to sod3 transfected rats. (B) Corresponding hematoxylin/eosin staining showed increased fibrosis in LacZ control animals in different time points as compared to SOD3 treated muscles. (C) The edges of the injured region were clearly visible. The left panel shows hematoxylin/eosin staining of normal uninjured (*) tissue region and injured fragmented (**) muscle section. In the right panel there is an inflammatory cell free region (#) and heavily positive CD68 inflammation muscle area (##). Since the fragmented and inflammatory cell positive regions were partially different the injured muscle tissue area was analyzed using both parameters separately. (D) Western blot with cleaved caspase- 3 (17 kDa and 19 kDa) antibody indicated increased apoptosis at 3-day and 7-day time points in LacZ control animals as compared to sod3 treated animals. (E) Rat endogenous sod3 mRNA expression (open bars) was downregulated at 7-day and 10-day time points (p.0.05 (*) and p,0.001 (***), respectively). The overexpression of transgene sod3 (line) was highest 3 days after the gene transfer and reduced to background levels by the day 10. The left Y-axis refers to relative endogenous sod3 and the right Y-axis relative transgene sod3 expression. (F) Ischemic injury caused significantly (p,0.001) increased nox2 mRNA expression as compared to normal uninjured control animals. Sod3 overexpression attenuated the increase causing a significant (p,0.01 (**)) reduction of nox2 expression as compared to 3-day LacZ control animals. (G) Injury-related increased (p,0.001 (***)) inos expression was significantly (p,0.001 (***) decreased by sod3 expressing tissues. doi:10.1371/journal.pone.0024456.g001 production (Figure 1F–G) could be due to macrophage infiltration into the ischemic injury region [14]. However, the expression of both enzymes was significantly (p,0.01 and p,0.001, respective- ly) attenuated by sod3 overexpression as compared to lacz control muscles. Cell culture and cell fractionation Since it has been reported that the cardiovascular damages are characterized by reduced sod3 expression [4–6] we analyzed the expression of endogenous rat sod3 mRNA in ischemic skeletal muscle from the control animals at different time points. At 3-day time point there was an initial increase in sod3 mRNA synthesis that was followed by 2-fold (p,0.05) reduction at 7-day time point and 10-fold reduction (p,0.001) at 10-day time point as compared to normal uninjured muscle (Figure 1E). The down-regulation of endogenous sod3 expression in injured tissues was paralleled by increased levels of pro-inflammatory molecules, such as NADPH oxidase 2 (nox2) and inducible nitric oxide synthase (inos) that, as previously shown [9,12,13] can be modulated by sod3 overexpres- sion. The injury-related marked increase in nox2 and inos mRNA NIH 3T3 cells (ATCC, Teddington, UK) were grown in DMEM 10% CS (Sigma) with penicillin-streptomycin (Sigma). Empty pcDNA3 control vector or human SOD3 cDNA (a kind gift from professor Stefan L. Marklund, University of Umea˚, Sweden) subcloned into the pcDNA3 plasmid, were stably transfected using Fugene 6 (Roche, Mannheim, Germany). The cells were grown in the presence of geneticin (Sigma) and prepared for cell fractionation. Nuclear and cytoplasmic fractions of the cells were isolated using NE-PER Cell Fractionation kit (Thermo Scientific, Waltham, MA, USA). The cells were lysed with the NE-PER nuclear and cytoplasmic extraction reagents. The fractionated proteins were loaded on SDS gels according to the standard procedures. PLoS ONE | www.plosone.org PLoS ONE | www.plosone.org August 2011 | Volume 6 | Issue 8 | e24456 August 2011 | Volume 6 | Issue 8 | e24456 2 SOD3-Regulated Apoptosis Figure 1. SOD3 overexpression affects tissue injury development and modifies redox enzyme expression. (A) Sod3 transduced ischemic muscle tissues had significantly lower injury score at 3-day (p,0.05 (*)) and at 7-day (p,0.05 (*)) time points. White bars refer to lacz control animals and black bars to sod3 transfected rats. (B) Corresponding hematoxylin/eosin staining showed increased fibrosis in LacZ control animals in different time points as compared to SOD3 treated muscles. (C) The edges of the injured region were clearly visible. The left panel shows hematoxylin/eosin staining of normal uninjured (*) tissue region and injured fragmented (**) muscle section. In the right panel there is an inflammatory cell free region (#) and heavily positive CD68 inflammation muscle area (##). Cell culture and cell fractionation These observations from animal tissues indicate that SOD3 overexpression has a significant impact on tissue injury related gene expression. modulate the activation of Ras-Erk1/2 signaling pathway [8], which is a major regulator of cell growth and survival, we verified the level of Erk1/2 phosphorylation in injured control and sod3 treated animals as compared to uninjured tissues. Figure 2A shows that the injury itself is causing an increase of phospho-Erk signaling, and that this effect is significantly up-regulated by Sod3 treatment at 3-day (p,0.001), 7-day (p,0.05), and 10-day (p,0.001) time points. We further investigated the effect of SOD3 in modulating the activity of Erk1/2 pathway by monitoring its downstream target transcription factors Elk-1 and Ets-1 [15,16]. Both elk-1 and ets-1 expressions were significantly (p,0.01 and p,0.001, respectively) increased in sod3 animals as compared to LacZ controls (Figure 2B–C). Interestingly, the injury itself had a minor effect on the synthesis of these two transcription Cell culture and cell fractionation Since the fragmented and inflammatory cell positive regions were partially different the injured muscle tissue area was analyzed using both parameters separately. (D) Western blot with cleaved caspase- 3 (17 kDa and 19 kDa) antibody indicated increased apoptosis at 3-day and 7-day time points in LacZ control animals as compared to sod3 treated animals. (E) Rat endogenous sod3 mRNA expression (open bars) was downregulated at 7-day and 10-day time points (p.0.05 (*) and p,0.001 (***), respectively). The overexpression of transgene sod3 (line) was highest 3 days after the gene transfer and reduced to background levels by the day 10. The left Y-axis refers to relative endogenous sod3 and the right Y-axis relative transgene sod3 expression. (F) Ischemic injury caused significantly (p,0.001) increased nox2 mRNA expression as compared to normal uninjured control animals. Sod3 overexpression attenuated the increase causing a significant (p,0.01 (**)) reduction of nox2 expression as compared to 3-day LacZ control animals. (G) Injury-related increased (p,0.001 (***)) inos expression was significantly (p,0.001 (***) decreased by sod3 expressing tissues. doi:10.1371/journal.pone.0024456.g001 Figure 1. SOD3 overexpression affects tissue injury development and modifies redox enzyme ex Figure 1. SOD3 overexpression affects tissue injury development and modifies redox enzyme expression. (A) Sod3 transduced ischemic muscle tissues had significantly lower injury score at 3-day (p,0.05 (*)) and at 7-day (p,0.05 (*)) time points. White bars refer to lacz control animals and black bars to sod3 transfected rats. (B) Corresponding hematoxylin/eosin staining showed increased fibrosis in LacZ control animals in different time points as compared to SOD3 treated muscles. (C) The edges of the injured region were clearly visible. The left panel shows hematoxylin/eosin staining of normal uninjured (*) tissue region and injured fragmented (**) muscle section. In the right panel there is an inflammatory cell free region (#) and heavily positive CD68 inflammation muscle area (##). Since the fragmented and inflammatory cell positive regions were partially different the injured muscle tissue area was analyzed using both parameters separately. (D) Western blot with cleaved caspase- 3 (17 kDa and 19 kDa) antibody indicated increased apoptosis at 3-day and 7-day time points in LacZ control animals as compared to sod3 treated animals. (E) Rat endogenous sod3 mRNA expression (open bars) was downregulated at 7-day and 10-day time points (p.0.05 (*) and p,0.001 (***), respectively). The overexpression of transgene sod3 (line) was highest 3 days after the gene transfer and reduced to background levels by the day 10. PLoS ONE | www.plosone.org SOD3-mediated anti-apoptotic signaling Based on the current data the significantly increased nox2 and inos mRNA expressions together with decreased sod3 expression at later time points (Figure 1E–G) suggest a marked imbalance in redox enzyme expression levels in developing tissue injury. Previously, we have shown that sod3 gene transfer to ischemic hind limb injury is able to increase the active SOD3 concentration in the tissue by 2-fold [8], which together with the remarkably long half-life of the enzyme in the muscle tissue, up to 100 hours [25], would be able correct the decrease of the endogenous enzyme expression causing the therapeutic response. The current analysis of the effect of sod3 overexpression on the apoptosis (Figure 1D) was in line with previous reports demonstrating the anti-apoptotic role of the enzyme [7,9] further suggesting SOD3-derived response on cell survival signaling. It has been shown that co-operative action of Akt and Ras- Erk1/2 signaling cascades mediate anti-apoptotic and pro- proliferative signals by e.g. causing FoxO3a phosphorylation, inactivation and consequent cytoplasmic entry [17,18] that in ischemic tissues has been reported to result in reduction of transcriptional effect on FoxO3a target genes [19]. We therefore investigated whether SOD3, by modulating Erk1/2 and Akt activation, could also affect FoxO3a phoshorylation status. Based on our current data SOD3 causes increased FoxO3a phosphor- ylation at 3-day time point (Figure 3A). Since phosphorylation determines the nuclear/cytoplasmic location of FoxO3a activity, we further characterized the SOD3-derived effect on FoxO3a localization in NIH 3T3 cells. The cells were stably transfected with SOD3 or control eukaryotic expression vector, fractionated to separate nuclear and cytoplasmic compartments, and analyzed by Western blotting. According to our results sod3 transfected cells had markedly (p,0.05) more phosphorylated total FoxO3a, and interestingly the amount of phosphorylated protein was significantly (p,0.001) enriched in the cytosolic compartment as compared to control vector transfected cells (Figure 3B). To determine the effect of SOD3 on the total amount of FoxO3a, we then performed a real time PCR analysis and found that SOD3 expressing cells (Figure 3C) had similar levels of foxo3a mRNA as compared to control cells (Figure 3D), suggesting that SOD3 is mainly influencing the phosphorylation levels and consequent cytoplasmic entry of FoxO3a, but not the total protein amount. Among the anti-apoptotic and pro-survival pathways that are activated after ischemic injuries, the PI3K-Akt and Erk1/2 routes are considered to be the most important. SOD3-mediated anti-apoptotic signaling The numerous substrates of these kinases include several apoptosis-related factors such as Foxo3a and caspases, which are affected by Akt and/or Erk phosphorylation [17,18,26–28]. The interplay between SOD3 and Akt has been confirmed previously in an in vitro experiment in which sod3 transfection increased phospho-Akt levels in cells but not at late time point in rat tissues [8]. In the present work, we found notably increased level of sod3 promoted Akt phosphory- lation at early phase of the injury that, however, was lost at later phase unlike Erk1/2, suggesting milder SOD3-related stimulation to PI3K-Akt than Erk1/2 signaling. To further strengthen the role of Erk1/2 in cell survival we showed upregulation of ets-1 and elk-1 transcription factors in sod3 treated animals as compared to controls (Figure 2B–C), which let us to speculate that the earlier robust Erk1/2 activation induced by SOD3 continuously boosts the ets-1 and elk-1 expression, lifting it to a significantly higher level than in the control animals. Since it was recently shown that in the nucleus FoxO3a suppresses the anti-apoptotic miR-21 transcription [20,21] we next analyzed the microRNA (miRNA) expression. Based on the quantitative real time-PCR data, the expression of mir-21 in sod3 overexpressing ischemic tissues at 3-day time point was signifi- cantly (p,0.001) increased as compared to uninjured control muscles. Even though the injury itself had an activating effect on miRNA expression (p,0.05) sod3 was able to significantly (p,0.01) further increase it as compared to LacZ injured control tissues (Figure 3E). To characterize another FoxO3a downstream target we then checked the mRNA expression of pro-apoptotic bim, which is known to be downregulated by coordinated action of Akt and Erk1/2 [22–24]. As shown in figure 3F, the injury-related increased (p,0.01) bim mRNA expression was significantly (p,0.01) decreased in sod3 tissues thereby indicating that the SOD3-derived activation of Akt in coordination with Erk1/2 signal transduction routes may represent a key mechanism to reduce the apoptotic response in tissues. One of the direct Erk1/2 and Akt target proteins, the ROS responsive transcription factor FoxO3a, regulates the expression of many cell cycle arrest- and apoptosis-related genes [29–32] and is also known to protect normal quiescent cells from oxidative stress by regulating several antioxidant genes e.g. peroxiredoxins, glutathione peroxidases, and superoxide dismutases including SOD3 [33–35]. Erk1/2 pathway is the principal pathway in SOD3- mediated tissue recovery To explain the reduced injury development and reduced apoptosis in our hind limb injury model we next studied the cell survival signaling pathways that become activated in sod3-treated tissues. Since we have previously proved that sod3 is able to PLoS ONE | www.plosone.org August 2011 | Volume 6 | Issue 8 | e24456 3 SOD3-Regulated Apoptosis SOD3-Regulated Apoptosis Figure 2. The effect of SOD3 on Erk1/2 signaling pathway. (A) Western blot analysis showed increased Erk1/2 phosphorylation in sod3 transduced muscles at 3-day, 7-day, and 10-day time points (p,0.001 (***), p,0.05 (*), and p,0.001 (***), respectively) as compared to corresponding lacz controls. The samples were normalized with total Erk1/2 antibody. Erk1/2 activation was supported by significant up-regulation of its downstream transcription factors (B) elk-1 (p,0.01 (**)) and (C) ets-1 (p,0.001 (***)), measured by mRNA synthesis in sod3 animals as compared to PLoS ONE | www.plosone.org 4 August 2011 | Volume 6 | Issue 8 | e24456 Figure 2. The effect of SOD3 on Erk1/2 signaling pathway. (A) Western blot analysis showed increased Erk1/2 phosphorylation in sod3 transduced muscles at 3-day, 7-day, and 10-day time points (p,0.001 (***), p,0.05 (*), and p,0.001 (***), respectively) as compared to corresponding lacz controls. The samples were normalized with total Erk1/2 antibody. Erk1/2 activation was supported by significant up-regulation of its downstream transcription factors (B) elk-1 (p,0.01 (**)) and (C) ets-1 (p,0.001 (***)), measured by mRNA synthesis in sod3 animals as compared to PLoS ONE | www.plosone.org August 2011 | Volume 6 | Issue 8 | e24456 4 SOD3-Regulated Apoptosis SOD3-Regulated Apoptosis LacZ control tissues. The injury itself moderately increased production of both molecules as compared to normal uninjured tissue control. However, the significant difference between normal control tissue and LacZ control (p,0.05 (*)) was achieved only in ets-1 expression. (D) Sod3 transduced muscles have increased levels of Akt phosphorylation only at 3-day time point (p,0.001 (***)). The samples were normalized with total Akt antibody. doi:10.1371/journal.pone.0024456.g002 Discussion factors, suggesting that sod3 overexpression plays an important role in the prolonged activation of mitogenic signal transduction routes controlling cell proliferation and tissue recovery. We then focused on the effect of SOD3 on the regulation of PI3K/Akt anti- apoptotic pathway to determine the reduced caspase-3 cleavage observed in sod3 treated animals by investigating phosphorylation of Akt in injured tissues. Our results showed that sod3 stimulated phosphorylation of Akt was visible only at early time point (3 days after the injury) (Figure 2D), whereas the simultaneous effect on Erk1/2 phosphorylation was long-lasting (up to 10 days) (Figure 2A). The skeletal muscle ischemia induces production of ROS by the disrupted metabolism and by the infiltrating inflammatory cells, such as macrophages. The physiological function of SOD3 is to convert superoxide anion to hydrogen peroxide on the extracel- lular side of the cell membrane [1,2] relieving the free radical superoxide anion derived damages in the tissue environment. However, this reaction leading to reduced oxidative stress does not explain per se the decreased apoptosis seen in SOD3 overexpressing tissues. Therefore, our purpose in the current work was to clarify the PI3K-Akt and Erk1/2 response caused by SOD3 in apoptosis model. SOD3-mediated anti-apoptotic signaling We discovered increased FoxO3a phosphorylation in sod3 treated animals at day 3 after the ischemic injury, which was then decreased to the level of the control animals (Figure 3A). The effect of sod3 overexpression on FoxO3a phosphorylation and cytoplasmic entry was confirmed in sod3 stable NIH3T3 cell line that demonstrated increased phosphorylation of the transcription factor while the total amount of foxo3a remained unaffected (Figure 3B–D). PLoS ONE | www.plosone.org August 2011 | Volume 6 | Issue 8 | e24456 August 2011 | Volume 6 | Issue 8 | e24456 5 SOD3-Regulated Apoptosis Figure 3. SOD3-mediated anti-apoptotic signaling. (A) The phosphorylation of FoxO3a (Thr32) in sod3 treated muscle tissues was strongly up- regulated at 3-day time point, had non-significant tendency at 7-day time point and showed no difference to LacZ control tissues at 10-day time point. The blot was normalized with tubulin antibody. (B) In vitro cell fractionation assay showed increased phosphorylation of FoxO3a in SOD3 stably transfected NIH 3T3 cells. The amount of phosphorylated protein was significantly (p,0.05 (*)) higher in the total cell extract and was enriched in the cytoplasmic fractions (p,0.001 (***)) of cells transfected with SOD3 when compared to control cells. Normalization was performed by using a-SP1 antibody for the nuclear fractions and a-tubulin antibody for the cytoplasmic fraction. For statistical analysis cytosol, nucleus, and total protein compartments were compared between control and SOD3 samples. (C–D) To determine the effect of SOD3 on the amount of total FoxO3a, we measured in NIH3T3 cells stably transfected with SOD3 (panel C) the mRNA synthesis of foxo3a (panel D) that showed no difference to control cells. (E) To verify whether FoxO3a targets were also regulated by SOD3 we then performed expression analysis for mir-21 in rat tissues showing significantly (p,0.05 (*)) increased miRNA synthesis caused by the ischemic injury that was further induced by sod3 overexpression (p,0.01 (**)) as compared to LacZ control animals). (F) Similarly, also the expression of bim, which is another target of FoxO3a, was found to be modulated by SOD3, as its expression was significantly stimulated (p,0.01 (**)) due to ischemia and then decreased by sod3 overexpression (p,0.01 (**)). doi:10.1371/journal.pone.0024456.g003 SOD3 Regulated Apoptosis Figure 3. SOD3-mediated anti-apoptotic signaling. References 1. Fridovich I (1975) Superoxide dismutases. Annu Rev Biochem 44: 147–159. 1. Fridovich I (1975) Superoxide dismutases. Annu Rev Biochem 44: 147–159. 14. Laurila JP, Laatikainen LE, Castellone MD, Laukkanen MO (2009) SOD3 reduces inflammatory cell migration by regulating adhesion molecule and cytokine expression. PLoS One 4: e5786. 2. Marklund SL (1982) Human copper-containing superoxide dismutase of high molecular weight. Proc Natl Acad Sci U S A 79: 7634–7638. 2. Marklund SL (1982) Human copper-containing superoxide dismutase of high molecular weight. Proc Natl Acad Sci U S A 79: 7634–7638. y p 15. Yordy JS, Muise-Helmericks RC (2000) Signal transduction and the Ets family of transcription factors. Oncogene 19: 6503–6513. 3. Oshikawa J, Urao N, Kim HW, Kaplan N, Razvi M, et al. (2010) Extracellular SOD-derived H2O2 promotes VEGF signaling in caveolae/lipid rafts and post- ischemic angiogenesis in mice. PLoS One 5: e10189. 16. Wasylyk B, Hagman J, Gutierrez-Hartmann A (1998) Ets transcription factors: nuclear effectors of the Ras-MAP-kinase signaling pathway. Trends Biochem Sci 23: 213–216. 4. Landmesser U, Merten R, Spiekermann S, Buttner K, Drexler H, et al. (2000) Vascular extracellular superoxide dismutase activity in patients with coronary artery disease: relation to endothelium-dependent vasodilation. Circulation 101: 2264–2270. 17. Yang JY, Zong CS, Xia W, Yamaguchi H, Ding Q, et al. (2008) ERK promotes tumorigenesis by inhibiting FOXO3a via MDM2-mediated degradation. Nat Cell Biol 10: 138–148. 5. Laukkanen MO, Kivela A, Rissanen T, Rutanen J, Karkkainen MK, et al. (2002) Adenovirus-mediated extracellular superoxide dismutase gene therapy reduces neointima formation in balloon-denuded rabbit aorta. Circulation 106: 1999–2003. 18. Brunet A, Bonni A, Zigmond MJ, Lin MZ, Juo P, et al. (1999) Akt promotes cell survival by phosphorylating and inhibiting a Forkhead transcription factor. Cell 96: 857–868. 6. Leite PF, Danilovic A, Moriel P, Dantas K, Marklund S, et al. (2003) Sustained decrease in superoxide dismutase activity underlies constrictive remodeling after balloon injury in rabbits. Arterioscler Thromb Vasc Biol 23: 2197–2202. 19. Hu Y, Wang X, Zeng L, Cai DY, Sabapathy K, et al. (2005) ERK phosphorylates p66shcA on Ser36 and subsequently regulates p27kip1 expression via the Akt-FOXO3a pathway: implication of p27kip1 in cell response to oxidative stress. Mol Biol Cell 16: 3705–3718. 7. Laukkanen MO, Leppanen P, Turunen P, Tuomisto T, Naarala J, et al. (2001) EC-SOD gene therapy reduces paracetamol-induced liver damage in mice. J Gene Med 3: 321–325. 20. SOD3-Regulated Apoptosis Figure 4. Schematic representation of the SOD3 action in promoting the cell survival in injured tissues. Temporal simultaneous activation of Erk1/2 and Akt leads to phosphorylation and consequent cytoplasmic translocation of FoxO3a, which then increases miR-21 production and downregulates the bim mRNA expression. Erk1/2 activation further stimulates the cell survival signaling by increasing cell proliferation related transcription factor production. doi:10 1371/journal pone 0024456 g004 suppress its expression [21]. In line with this, we demonstrated increased mir-21 expression in vivo in sod3-transduced tissues (Figure 3E). Next, to confirm that sod3 is affecting FoxO3a function we monitored the inhibition of bim, another common downstream target of Akt and Erk1/2 pathways. BH3-only proteins, such as BIM, are cell death initiators that are activated in cellular stress conditions including response to DNA damages, decreased metabolism, growth factor withdrawal, and hypoxia. Based on our results the significantly (p,0.01) decreased expression of bim mRNA production correlated with sod3 overexpression in muscles suggesting that SOD3-derived increased FoxO3a phosphorylation at 3-day time point might be able to attenuate the initiation of the apoptotic process by BH3-only protein BIM (Figure 3F). In summary, we have elucidated the signaling events by which the extracellular sod3 promotes cell survival and tissue recovery in skeletal muscle ischemia model (Figure 4). The overexpression of sod3 correlated with simultaneous activation of Akt and Erk1/2, consequent FoxO3a cytoplasmic entry, anti-apoptotic mir-21 upregulation and pro-apoptotic bim mRNA downregulation. On the tissue level, sod3 overexpression attenuated the injury development and decreased apoptosis. Therefore, the present data support our previous findings connecting the Erk1/2 mitogenic signaling cascade and downstream effectors to sod3 expression and cell survival effects. Author Contributions doi:10.1371/journal.pone.0024456.g004 Conceived and designed the experiments: MDC MS MOL. Performed the experiments: LEL MI MDC JPL MOL. Analyzed the data: LEL JPL MOL. Contributed reagents/materials/analysis tools: MS MOL. Wrote the paper: LEL JPL MDC MOL. Recently, FoxO3a was found to negatively regulate an anti- apoptotic microRNA, mir-21 by binding the mir-21 promoter to SOD3-mediated anti-apoptotic signaling (A) The phosphorylation of FoxO3a (Thr32) in sod3 treated muscle tissues was strongly up- regulated at 3-day time point, had non-significant tendency at 7-day time point and showed no difference to LacZ control tissues at 10-day time point. The blot was normalized with tubulin antibody. (B) In vitro cell fractionation assay showed increased phosphorylation of FoxO3a in SOD3 stably transfected NIH 3T3 cells. The amount of phosphorylated protein was significantly (p,0.05 (*)) higher in the total cell extract and was enriched in the cytoplasmic fractions (p,0.001 (***)) of cells transfected with SOD3 when compared to control cells. Normalization was performed by using a-SP1 antibody for the nuclear fractions and a-tubulin antibody for the cytoplasmic fraction. For statistical analysis cytosol, nucleus, and total protein compartments were compared between control and SOD3 samples. (C–D) To determine the effect of SOD3 on the amount of total FoxO3a, we measured in NIH3T3 cells stably transfected with SOD3 (panel C) the mRNA synthesis of foxo3a (panel D) that showed no difference to control cells. (E) To verify whether FoxO3a targets were also regulated by SOD3 we then performed expression analysis for mir-21 in rat tissues showing significantly (p,0.05 (*)) increased miRNA synthesis caused by the ischemic injury that was further induced by sod3 overexpression (p,0.01 (**)) as compared to LacZ control animals). (F) Similarly, also the expression of bim, which is another target of FoxO3a, was found to be modulated by SOD3, as its expression was significantly stimulated (p,0.01 (**)) due to ischemia and then decreased by sod3 overexpression (p,0.01 (**)). doi:10.1371/journal.pone.0024456.g003 August 2011 | Volume 6 | Issue 8 | e24456 August 2011 | Volume 6 | Issue 8 | e24456 PLoS ONE | www.plosone.org 6 SOD3-Regulated Apoptosis p 31. Furukawa-Hibi Y, Kobayashi Y, Chen C, Motoyama N (2005) FOXO transcription factors in cell-cycle regulation and the response to oxidative stress. Antioxid Redox Signal 7: 752–760. 28. Biswas SC, Greene LA (2002) Nerve growth factor (NGF) down-regulates the Bcl-2 homology 3 (BH3) domain-only protein Bim and suppresses its proapoptotic activity by phosphorylation. J Biol Chem 277: 49511–49516. 30. Lee HY, You HJ, Won JY, Youn SW, Cho HJ, et al. (2008) Forkhead factor, FOXO3a, induces apoptosis of endothelial cells through activation of matrix metalloproteinases. Arterioscler Thromb Vasc Biol 28: 302–308. 32. Lei H, Quelle FW (2009) FOXO transcription factors enforce cell cycle checkpoints and promote survival of hematopoietic cells after DNA damage. Mol Cancer Res 7: 1294–1303. p p p y y p p y J 29. Liu JW, Chandra D, Rudd MD, Butler AP, Pallotta V, et al. (2005) Induction of prosurvival molecules by apoptotic stimuli: involvement of FOXO3a and ROS. Oncogene 24: 2020–2031. References van der Horst A, Burgering BM (2007) Stressing the role of FoxO proteins in lifespan and disease. Nat Rev Mol Cell Biol 8: 440–450. 8. Laurila JP, Castellone MD, Curcio A, Laatikainen LE, Haaparanta-Solin M, et al. (2009) Extracellular superoxide dismutase is a growth regulatory mediator of tissue injury recovery. Mol Ther 17: 448–454. 21. Wang K, Li PF (2010) Foxo3a regulates apoptosis by negatively targeting miR- 21. J Biol Chem 285: 16958–16966. 22. Essafi A, Fernandez de Mattos S, Hassen YA, Soeiro I, Mufti GJ, et al. (2005) Direct transcriptional regulation of Bim by FoxO3a mediates STI571-induced apoptosis in Bcr-Abl-expressing cells. Oncogene 24: 2317–2329. 9. Ozumi K, Tasaki H, Takatsu H, Nakata S, Morishita T, et al. (2005) Extracellular superoxide dismutase overexpression reduces cuff-induced arterial neointimal formation. Atherosclerosis 181: 55–62. 23. Balmanno K, Cook SJ (2009) Tumour cell survival signalling by the ERK1/2 pathway. Cell Death Differ 16: 368–377. 10. Qin Z, Reszka KJ, Fukai T, Weintraub NL (2008) Extracellular superoxide dismutase (ecSOD) in vascular biology: an update on exogenous gene transfer and endogenous regulators of ecSOD. Transl Res 151: 68–78. 24. Qi XJ, Wildey GM, Howe PH (2006) Evidence that Ser87 of BimEL is phosphorylated by Akt and regulates BimEL apoptotic function. J Biol Chem 281: 813–823. 11. Folz RJ, Abushamaa AM, Suliman HB (1999) Extracellular superoxide dismutase in the airways of transgenic mice reduces inflammation and attenuates lung toxicity following hyperoxia. J Clin Invest 103: 1055–1066. 25. Karlsson K, Sandstrom J, Edlund A, Marklund SL (1994) Turnover of extracellular-superoxide dismutase in tissues. Lab Invest 70: 705–710. 12. Brandes RP, Weissmann N, Schroder K (2010) NADPH oxidases in cardiovascular disease. Free Radic Biol Med 49: 687–706. 26. Gao Y, Ordas R, Klein JD, Price SR (2008) Regulation of caspase-3 activity by insulin in skeletal muscle cells involves both PI3-kinase and MEK-1/2. J Appl Physiol 105: 1772–1778. 13. Younes M, Schoenberg MH, Jung H, Fredholm BB, Haglund U, et al. (1984) Oxidative tissue damage following regional intestinal ischemia and reperfusion in the cat. Res Exp Med (Berl) 184: 259–264. y 27. Allan LA, Morrice N, Brady S, Magee G, Pathak S, et al. (2003) Inhibition of caspase- 9 through phosphorylation at Thr 125 by ERK MAPK. Nat Cell Biol 5: 647–654. PLoS ONE | www.plosone.org 7 August 2011 | Volume 6 | Issue 8 | e24456 35. Huang H, Tindall DJ (2007) Dynamic FoxO transcription factors. J Cell Sci 120: 2479–2487. SOD3-Regulated Apoptosis SOD3-Regulated Apoptosis 32. Lei H, Quelle FW (2009) FOXO transcription factors enforce cell cycle checkpoints and promote survival of hematopoietic cells after DNA damage. Mol Cancer Res 7: 1294–1303. 29. Liu JW, Chandra D, Rudd MD, Butler AP, Pallotta V, et al. (2005) Induction of prosurvival molecules by apoptotic stimuli: involvement of FOXO3a and ROS. Oncogene 24: 2020–2031. 33. Kops GJ, Dansen TB, Polderman PE, Saarloos I, Wirtz KW, et al. (2002) Forkhead transcription factor FOXO3a protects quiescent cells from oxidative stress. Nature 419: 316–321. g 30. Lee HY, You HJ, Won JY, Youn SW, Cho HJ, et al. (2008) Forkhead factor, FOXO3a, induces apoptosis of endothelial cells through activation of matrix metalloproteinases. Arterioscler Thromb Vasc Biol 28: 302–308. 34. Tothova Z, Kollipara R, Huntly BJ, Lee BH, Castrillon DH, et al. (2007) FoxOs are critical mediators of hematopoietic stem cell resistance to physiologic oxidative stress. Cell 128: 325–339. p 31. Furukawa-Hibi Y, Kobayashi Y, Chen C, Motoyama N (2005) FOXO transcription factors in cell-cycle regulation and the response to oxidative stress. Antioxid Redox Signal 7: 752–760. 35. Huang H, Tindall DJ (2007) Dynamic FoxO transcription factors. J Cell Sci 120: 2479–2487. PLoS ONE | www.plosone.org August 2011 | Volume 6 | Issue 8 | e24456 8
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https://europepmc.org/articles/pmc5061094?pdf=render
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Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
New phytologist
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Research Summary Key words: decomposition, ectomycorrhizal fungi, evolution, soil organic matter, spectroscopy, transcriptome.  The capacity to oxidize SOM appears to be common among ectomycorrhizal fungi. We propose that the ancestral decay mechanisms used primarily to obtain carbon have been adapted in symbiosis to scavenge nutrients instead. be released from the SOM. However, the microorganisms and the mechanisms involved in these processes are poorly characterized. be released from the SOM. However, the microorganisms and the mechanisms involved in these processes are poorly characterized. Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors Firoz Shah1, Cesar Nicolas1, Johan Bentzer1, Magnus Ellstr€om1, Mark Smits2, Francois Rineau2, Bj€orn Canb€ack1, Dimitrios Floudas1,3, Robert Carleer2, Gerald Lackner4, Jana Braesel4, Dirk Hoffmeister4, Bernard Henrissat5,6, Dag Ahren1,7, Tomas Johansson1, David S. Hibbett3, Francis Martin8, Per Persson1,9 and Anders Tunlid1 1Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, SE-223 62 Lund, Sweden; 2Centre for Environmental Sciences, Hasselt University, Building D, Agoralaan, 3590 Diepenbeek, Limburg, Belgium; 3Biology Department, Lasry Center for Bioscience, Clark University, 950 Main Street, Worcester, MA 01610-1477, USA; 4Department of Firoz Shah1, Cesar Nicolas1, Johan Bentzer1, Magnus Ellstr€om1, Mark Smits2, Francois Rineau2, Bj€orn Canb€ack1, Dimitrios Floudas1,3, Robert Carleer2, Gerald Lackner4, Jana Braesel4, Dirk Hoffmeister4, Bernard Henrissat5,6, Dag Ahren1,7, Tomas Johansson1, David S. Hibbett3, Francis Martin8, Per Persson1,9 and Anders Tunlid1 Firoz Shah1, Cesar Nicolas1, Johan Bentzer1, Magnus Ellstr€om1, Mark Smits2, Francois Rineau2, Bj€orn Canb€ack1, Dimitrios Floudas1,3, Robert Carleer2, Gerald Lackner4, Jana Braesel4, Dirk Hoffmeister4, Bernard Henrissat5,6, Dag Ahren1,7, Tomas Johansson1, David S. Hibbett3, Francis Martin8, Per Persson1,9 and Anders Tunlid1 1Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, SE-223 62 Lund, Sweden; 2Centre for Environmental Sciences, Hasselt University, Building D, Agoralaan, 3590 Diepenbeek, Limburg, Belgium; 3Biology Department, Lasry Center for Bioscience, Clark University, 950 Main Street, Worcester, MA 01610-1477, USA; 4Department of Pharmaceutical Microbiology at the Hans Kn€oll Institute, Friedrich-Schiller-Universit€at, Beutenbergstrasse 11a, 07745 Jena, Germany; 5Centre National de la Recherche Scientifique (CNRS), UMR7257, Universite Aix-Marseille, Marseille 13288, France; 6Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia; 7Bioinformatics Infrastructures for Life Sciences (BILS), Department of Biology, Lund University, Ecology Building, SE-223 62 Lund, Sweden; 8Institut de la Recherche Agronomique (INRA), Laboratory of Excellence ARBRE, UMR INRA-Universite de Lorraine ‘Interactions Arbres/Micro-organismes’, INRA-Nancy, 54280 Champenoux, France; 9Centre for Environmental and Climate Research (CEC), Lund University, Ecology Building, SE-223 62 Lund, Sweden University, Ecology Building, SE-223 62 Lund, Sweden New Phytologist (2016) 209: 1705–1719 1705 www.newphytologist.com Summary Author for correspondence: Anders Tunlid Tel: +46 46 222 37 57 Email: anders.tunlid@biol.lu.se Received: 8 June 2015 Accepted: 22 September 2015  Ectomycorrhizal fungi are thought to have a key role in mobilizing organic nitrogen that is trapped in soil organic matter (SOM). However, the extent to which ectomycorrhizal fungi decompose SOM and the mechanism by which they do so remain unclear, considering that they have lost many genes encoding lignocellulose-degrading enzymes that are present in their saprotrophic ancestors.  Ectomycorrhizal fungi are thought to have a key role in mobilizing organic nitrogen that is trapped in soil organic matter (SOM). However, the extent to which ectomycorrhizal fungi decompose SOM and the mechanism by which they do so remain unclear, considering that they have lost many genes encoding lignocellulose-degrading enzymes that are present in their saprotrophic ancestors.  Spectroscopic analyses and transcriptome profiling were used to examine the mechanisms by which five species of ectomycorrhizal fungi, representing at least four origins of symbiosis, decompose SOM extracted from forest soils.  Spectroscopic analyses and transcriptome profiling were used to examine the mechanisms by which five species of ectomycorrhizal fungi, representing at least four origins of symbiosis, decompose SOM extracted from forest soils. New Phytologist (2016) 209: 1705–1719 doi: 10.1111/nph.13722 New Phytologist (2016) 209: 1705–1719 doi: 10.1111/nph.13722 p  In the presence of glucose and when acquiring nitrogen, all species converted the organic matter in the SOM extract using oxidative mechanisms. The transcriptome expressed during oxidative decomposition has diverged over evolutionary time. Each species expressed a differ- ent set of transcripts encoding proteins associated with oxidation of lignocellulose by sapro- trophic fungi. The decomposition ‘toolbox’ has diverged through differences in the regulation of orthologous genes, the formation of new genes by gene duplications, and the recruitment of genes from diverse but functionally similar enzyme families.  In the presence of glucose and when acquiring nitrogen, all species converted the organic matter in the SOM extract using oxidative mechanisms. The transcriptome expressed during oxidative decomposition has diverged over evolutionary time. Each species expressed a differ- ent set of transcripts encoding proteins associated with oxidation of lignocellulose by sapro- trophic fungi. The decomposition ‘toolbox’ has diverged through differences in the regulation of orthologous genes, the formation of new genes by gene duplications, and the recruitment of genes from diverse but functionally similar enzyme families.  2015 The Authors New Phytologist  2015 New Phytologist Trust This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.  2015 The Authors New Phytologist  2015 New Phytologist Trust y g g This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.  2015 The Authors New Phytologist  2015 New Phytologist Trust This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. Fungal species We analysed five ECM species belonging to three basidiomycete orders (Boletales, Agaricales and Atheliales), selected based on the availability of published genome sequences. The five ECM species represent at least four independent evolutionary origins of symbio- sis (Fig. 1; Supporting Information Table S1) and they are distant from each other as the last common ancestor of Agaricomycetidae probably lived between 125 and 150 million yr ago (Ma; Floudas et al., 2012; Kohler et al., 2015). The most densely sampled clade was the Boletales, with two ECM species (Paxillus involutus (Batsch) Fr. and Suillus luteus (L.) Roussel) that are nested with a paraphyletic assemblage of BR wood decayers (Kohler et al., 2015), of which three species (Coniophora puteana (Schumach.) P. Karst, Hydnomerulius pinastri (Fr.) Jarosch & Besl, and Serpula lacrymans (Wulfen) P. Karst.) were included in our study. The two examined ECM species of the Agaricales clade evolved independently from different saprotrophic ancestors: Laccaria bicolor (Maire) P.D. Orton may be derived from litter-decomposing saprotrophs, whereas Hebeloma cylindrosporum Romagnesi is nested in a clade of WR wood decayers (Matheny et al., 2006; Kohler et al., 2015). Finally, Piloderma croceum J. Erikss. & Hjortstam is nested within the ecologically diverse Atheliales–Amylocorticales clade, which includes WR and BR saprotrophs as well as various biotrophs (Hibbett et al., 2014; Kohler et al., 2015). The wood-decomposing fungus Jaapia argillacea Bres. (Jaapiales), which lacks ligninolytic class II PODs but encodes diverse enzymes acting on crystalline cellulose (Riley et al., 2014), was used as an outgroup. The sampled ECM fungi differ also in their ecology. The Boletales species are long-distance-exploration types with a rapidly growing extramatri- cal mycelium and a high capacity to decompose and mobilize organic N. By contrast, the ECM species from the other clades are short- and medium-distance-exploration types, which grow more slowly and have a limited ability to assimilate organic N (Agerer, 2001; Hobbie & Agerer, 2010). Recent analyses of genome sequences further support the view that ECM fungi have a limited capacity to decompose complex organic material such as lignocellulose. These analyses have shown that ECM fungi have a smaller set of genes encoding enzymes that degrade plant cell walls than do their saprotrophic ancestors, including BR and WR wood decayers (Martin et al., 2008; Kohler et al., 2015). Introduction A large part of the nitrogen (N) found in forest soils is present in organic forms, primarily as proteins and peptides but also as amino acids, amino sugars and heterocyclic molecules (Nannip- ieri & Eldor, 2009). During decomposition, these N molecules accumulate in a complex mixture of plant- and microbial-derived molecules. This soil organic matter (SOM), operationally defined as humic substances, consists of relatively low-molecular-weight fragments of lignin, polysaccharides, polyphenols, lipids, pepti- doglycan, peptides and other biomolecules (Simpson et al., 2007; Schmidt et al., 2011). The molecules associate with each other in supramolecular aggregates that are stabilized by hydrophobic interactions and hydrogen (H) bonding and by interactions with mineral particles (Kleber & Johnson, 2010; Kleber et al., 2015). To become available for plants, the organic N compounds must Filamentous saprotrophic fungi are thought to have a unique ability to degrade lignin and other phenolic compounds of forest SOM (Baldrian, 2008). On the basis of studies of wood-decaying fungi, two major decomposition mechanisms have been charac- terized in detail: decomposition by white-rot (WR) fungi and decomposition by brown-rot (BR) fungi (Hatakka & Hammel, 2010). The ligninolytic system of WR fungi depends on extracel- lular oxidative enzymes, particularly class II peroxidases (class II PODs). These fungi also secrete various glycoside hydrolases (GHs) that break down crystalline cellulose. BR fungi lack most of the oxidative enzymes and cellulase systems of WR fungi (Floudas et al., 2012) and instead decompose lignocellulose by means of an initial nonenzymatic step: attack by reactive oxygen New Phytologist (2016) 209: 1705–1719 1705 www.newphytologist.com New Phytologist New Phytologist Research 1706 important role in the decomposition of complex humic-rich SOM in northern forest ecosystems. species, including hydroxyl radicals generated by the Fenton reac- tion (H2O2 + Fe2+ + H+ ? H2O + Fe3+ + •OH) (Martinez et al., 2009; Hatakka & Hammel, 2010). In recent years, a number of new enzymes have been identified that are involved in the oxida- tive conversion of lignocellulose, such as lytic polysaccharide monooxygenases (LPMOs) (Quinlan et al., 2011), various oxi- doreductases (Levasseur et al., 2013), and heme-containing haloperoxidases, including chloroperoxidases and aromatic per- oxygenases (Hofrichter et al., 2010). During fungal attack, these oxidases promote extended cleavage of plant cell wall compo- nents and generate the reactants needed for the Fenton reaction. Fungal species We previously demonstrated that the ECM fungus Paxillus involutus can nevertheless decompose lig- nocellulosic material in SOM extracts while assimilating organic N using a Fenton-based oxidation mechanism similar to that of BR fungi (Rineau et al., 2012). The oxidation is triggered by the addition of glucose, which suggests that the mechanism can be regulated by the host C supply (Rineau et al., 2013). During the oxidative decomposition of the SOM extract, P. involutus expresses a large number of extracellular endo- and exopeptidases that are regulated in parallel with transporters and enzymes involved in the assimilation and metabolism of the released N (Shah et al., 2013). Other ECM taxa, including Cortinarius species, contain genes encoding class II PODs (B€odeker et al., 2009; Hatakka & Hammel, 2010). More recently, B€odeker et al. (2014) demonstrated that the transcription of Cortinarius class II PODs genes was correlated with high peroxidase activity in soils, supporting the hypothesis that Cortinarius species may play an Materials and Methods g ( p y ) The other main functional group of fungi in northern forest soils comprises the ectomycorrhizal (ECM) symbionts. ECM fungi are biotrophs that obtain photosynthetic sugars from the host plant, which, in return, receives nutrients, including N and phosphorus, from the fungal partner (Smith & Read, 2008). Car- bon (C) from the plant supports the growth of an extramatrical mycelium. This mycelium is present mainly in regions of the soil horizons that are rich in humic substances (Lindahl et al., 2007). To release the N present in such material, it can be expected that ECM fungi can disrupt organic-matter-N complexes. Indeed, studies using various model compounds such as cellulose and polyphenols have shown that ECM fungi have some decompos- ing capacity (Norkrans, 1950; Trojanowski et al., 1984). ECM fungi also produce extracellular enzymes such as cellulases, hemicellulases and polyphenoloxidases, which are thought to contribute to the degradation of components of plant litter (Read & Perez-Moreno, 2003). However, ECM fungi express such enzymes at much lower levels than do saprotrophic fungi grown under identical conditions (Read & Perez-Moreno, 2003). Introduction In addition, secondary metabolites such as hydroquinones and variegatic acid have key roles in the reductions of Fe3+ and O2 in BR fungi (Eastwood et al., 2011; Korripally et al., 2013). Here, we examined the capacity of several ECM fungi to decompose biomolecules present in SOM and the mechanisms underlying this decomposition. In particular, we assessed the fol- lowing: whether the capacity to decompose SOM has been retained by ECM fungi of different evolutionary origins and functional ecologies; whether the arrays of enzymes expressed upon SOM decomposition by ECM fungi are similar to those of related saprotrophic wood decomposers; and whether the decom- position mechanisms of ECM fungi have any common molecular signatures as a result of similar selection pressures. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Culture conditions The neighbour-joining gene expression tree (right) was constructed with the expression levels of the orthologues upon fungal growth on soil organic matter extracts (asterisk) and mineral nutrient medium (MMN) (no asterisk), with 1000 bootstrap replicates. Both trees were rooted with Jaapia argillacea as an outgroup. The closed red triangles indicate the estimated origins of the ectomycorrhizal (ECM) fungi; the open red triangle indicates an alternative reconstruction with a single origin in the Boletales clade and at least one reversal to saprotrophy (Kohler et al., 2015). The last common ancestor of the Agaricomycetidae clade (indicated with an arrow) probably lived between 125 and 150 million yr ago (Floudas et al., 2012; Kohler et al., 2015). The designations in boldface letters indicate ECM fungi. COP, Coniophora puteana; HEC, Hebeloma cylindrosporum; HYP, Hydnomerulius pinastri; JAA, Jaapia argillacea; LAB, Laccaria bicolor; PAI, Paxillus involutus; PIC, Piloderma croceum; SEL, Serpula lacrymans; SUL, Suillus luteus. Fig. 1 Species and gene expression phylogenies of analysed fungi. A maximum likelihood species tree (left) was reconstructed with sequences from 3148 putative 1: 1 orthologues from each of the nine analysed fungal species, with 1000 bootstrap replicates. The neighbour-joining gene expression tree (right) was constructed with the expression levels of the orthologues upon fungal growth on soil organic matter extracts (asterisk) and mineral nutrient medium (MMN) (no asterisk), with 1000 bootstrap replicates. Both trees were rooted with Jaapia argillacea as an outgroup. The closed red triangles indicate the estimated origins of the ectomycorrhizal (ECM) fungi; the open red triangle indicates an alternative reconstruction with a single origin in the Boletales clade and at least one reversal to saprotrophy (Kohler et al., 2015). The last common ancestor of the Agaricomycetidae clade (indicated with an arrow) probably lived between 125 and 150 million yr ago (Floudas et al., 2012; Kohler et al., 2015). The designations in boldface letters indicate ECM fungi. COP, Coniophora puteana; HEC, Hebeloma cylindrosporum; HYP, Hydnomerulius pinastri; JAA, Jaapia argillacea; LAB, Laccaria bicolor; PAI, Paxillus involutus; PIC, Piloderma croceum; SEL, Serpula lacrymans; SUL, Suillus luteus. 150 mg l1 MgSO47H2O, 25 mg l1 NaCl, 50 mg l1 CaCl2, 12 mg l1 FeCl36H2O and 1 mg l1 thiamine-HCl; pH 4.0) (Rineau et al., 2012). After 9 d of incubation (18°C in the dark), the medium was replaced with MMN medium without N to induce an N-deprived mycelium (Shah et al., 2013). Culture conditions After 24 h, the mycelium was washed in sterile water, and the SOM extract (10 ml) was added.  2015 The Authors New Phytologist  2015 New Phytologist Trust Culture conditions The fungi were grown in Petri dishes on a layer of glass beads immersed in a minimum Melin–Norkrans (MMN) medium (2.5 g l1 glucose, 500 mg l1 KH2PO4, 200 mg l1 NH4Cl,  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist Research 1707 PAI* PAI SUL* SUL SEL* SEL HYP* HYP COP* COP LAB* LAB HEC* HEC PIC* PIC JAA* JAA 100 100 100 100 100 PAI HYP SUL COP SEL PIC 100 LAB HEC JAA 100 100 91 100 100 100 63 53 100 100 100 96 86 100 100 100 Species phylogeny Gene expression Boletales Atheliales Agaricales Jaapiales Agaricomycetidae Fig. 1 Species and gene expression phylogenies of analysed fungi. A maximum likelihood species tree (left) was reconstructed with sequences from 3148 putative 1: 1 orthologues from each of the nine analysed fungal species, with 1000 bootstrap replicates. The neighbour-joining gene expression tree (right) was constructed with the expression levels of the orthologues upon fungal growth on soil organic matter extracts (asterisk) and mineral nutrient medium (MMN) (no asterisk), with 1000 bootstrap replicates. Both trees were rooted with Jaapia argillacea as an outgroup. The closed red triangles indicate the estimated origins of the ectomycorrhizal (ECM) fungi; the open red triangle indicates an alternative reconstruction with a single origin in the Boletales clade and at least one reversal to saprotrophy (Kohler et al., 2015). The last common ancestor of the Agaricomycetidae clade (indicated with an arrow) probably lived between 125 and 150 million yr ago (Floudas et al., 2012; Kohler et al., 2015). The designations in boldface letters indicate ECM fungi. COP, Coniophora puteana; HEC, Hebeloma cylindrosporum; HYP, Hydnomerulius pinastri; JAA, Jaapia argillacea; LAB, Laccaria bicolor; PAI, Paxillus involutus; PIC, Piloderma croceum; SEL, Serpula lacrymans; SUL, Suillus luteus. PAI* PAI SUL* SUL SEL* SEL HYP* HYP COP* COP LAB* LAB HEC* HEC PIC* PIC JAA* JAA 100 100 100 100 100 PAI HYP SUL COP SEL PIC 100 LAB HEC JAA 100 100 91 100 100 100 63 53 100 100 100 96 86 100 100 100 Species phylogeny Gene expression Boletales Atheliales Agaricales Jaapiales Agaricomycetidae Boletales Atheliales Agaricales Jaapiales Gene expression Gene expression Species phylogeny Fig. 1 Species and gene expression phylogenies of analysed fungi. A maximum likelihood species tree (left) was reconstructed with sequences from 3148 putative 1: 1 orthologues from each of the nine analysed fungal species, with 1000 bootstrap replicates. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Chemical analyses New Phytologist Absorbance (au) Wavenumber (cm–1) PC 2 (12.2%) PC 1 (76.2 %) –1.5 –1.0 –0.5 0.0 0.5 1.0 1.5 –3.0 –2.0 –1.0 0.0 1.0 2.0 3.0 4.0 5.0 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 mean ± SE 0.8 1.0 1.2 Lignin residues Monoaromatics Polyaromatics N-compounds Polysaccharides Tannins 0.0 0.5 1.0 1.5 2.0 FH0 PAI SUL HYP COP JAA Ox/C3-G a cd d bc b b (a) (b) (c) 700 900 1100 1300 1500 1700 1900 2100 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 Research 1708 Absorbance (au) Wavenumber (cm–1) (a) 700 900 1100 1300 1500 1700 1900 2100 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 (a) Transcriptome analysis After the incubation, the mycelium was collected, immediately frozen in liquid N2 and subsequently ground to a fine powder with a mortar. Total RNA was isolated using the RNeasy Plant Mini K on-colu instruct until use an RNA Absorbance (au) Wavenumber (cm–1) PC 2 (12.2%) PC 1 (76.2 %) –1.5 –1.0 –0.5 0.0 0.5 1.0 1.5 –3.0 –2.0 –1.0 0.0 1.0 2.0 3.0 4.0 5.0 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 mean ± SE 0.0 0.2 0.4 0.6 0.8 1.0 1.2 FH0 PAI SUL HYP COP JAA Lignin residues Monoaromatics Polyaromatics N-compounds Polysaccharides Tannins 0.0 0.5 1.0 1.5 2.0 FH0 PAI SUL HYP COP JAA Ox/C3-G a cd d bc b b (a) (b) (c) 700 900 1100 1300 1500 1700 1900 2100 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 Fig. 2 Decomposition of soil organic matter (SOM) extract. (a) Fourier transform infrared (FTIR) spectra of the SOM extract before (FH0, initial material) and after 7 d of incubation with various ectomycorrhizal (ECM) and saprophytic fungi (au, arbitrary units). All spectra have been normalized to the same total area over the wave number region displayed (n = 3). Spectral changes were observed in six regions ascribed to different vibrational modes: C–O and C–O–C stretching of carbohydrates (970– 1150 cm1); C–O stretching of phenols (1150–1250 cm1); C–O stretching of esters (1300 cm1); O–H bending, aliphatic C–H deformation or ammonium N–H bending (1350–1450 cm1); C–C stretching of aromatic rings (1510 cm1); and C=O stretching of carbonyl groups (1620– 1800 cm1). Chemical analyses Total organic C concentration was measured with an organic C analyser (Shimadzu, Kyoto, Japan). Total N content was mea- sured with the same apparatus equipped with a total nitrogen module (TNM-1) detector. The glucose concentration was mea- sured by means of a glucose assay (Sigma-Aldrich, Seelze, Ger- many). Fourier transform infrared (FTIR) spectra were recorded on a Bruker IFS66 v/s spectrometer (Bruker Scientific Instru- ments, Billerica, MA, USA). Data were collected in diffuse reflectance mode. Each spectrum was the result of 1000 consecu- tive scans at a resolution of 4 cm1. A Perkin-Elmer TurboMass/ Autosystem XL with a Frontier Lab Double Shot pyrolyser was used for py-GC/MS (Perkin-Elmer, Waltham, MA, USA). Pyrol- ysis data were acquired and processed with QCALIBUR 1.4 SR1 software (Thermo Finnigan, San Jose, CA, USA), and peaks were identified by comparison with published and stored data (National Institute of Standards and Technology (NIST) library). A standard series of SOM extracts with increasing concentrations of glucose (0.0–2.5 g l1 glucose) was analysed to correct the con- tribution of glucose to each pyrolytic product. The iron-reducing activity in the culture filtrates was analysed by means of a fer- rozine assay (Goodell et al., 2006). Further details of the chemical analyses are given in Rineau et al. (2012). SOM was extracted from the upper 10-cm soil layer in a 61- yr-old Norway spruce (Picea abies (L.) H. Karst) stand growing in an N-poor site in central Sweden (soil pH 5.0) (Table S2) using hot water (Davidson et al., 1987). Pyrolysis-GC/MS (py- GC/MS) (Fig. 2c) showed that the SOM extract contained the major classes of biomolecules that are present in intact SOM (Simpson et al., 2007). Particles were removed by filtration (0.2 lm), and low-molecular-weight metabolites were partly removed by ultrafiltration (cut-off 1 kDa). The concentration of the SOM extract was adjusted, and the extract was supplemented with glucose to a final concentration similar to that in the MMN medium (Rineau et al., 2012). The fungi were grown in either the MMN medium or the SOM extract (three replicates each). The cultures were incubated for 7 d at 18°C in the dark. To test the capacity of the fungi to oxidize the organic matter in the absence of glucose, four of the Boletales species were grown on the SOM extract without glucose amendment. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com  2015 The Authors New Phytologist  2015 New Phytologist Trust Annotations A gene expression tree of the 1 : 1 orthologues was constructed by means of the neighbour-joining (NJ) method. The expression values of three biological replicates from the same putative 1 : 1 orthologues used for the species tree were normalized, by means of the DESeq package, to make the values comparable between species. The sample distances were calculated as Euclidean distances between the mean of the samples or alternatively, as (1  P) where P is the Spearman’s correlation coefficient between the sample expression profiles. The APE package in R was used to construct the NJ expression tree and to perform the bootstrap analysis with 1000 replicates (Paradis et al., 2004). Gene models and annotations for each of the fungal species were retrieved from the Joint Genome Institute (JGI) MycoCosm database (Table S1). The SIGNALP algorithm (v.4.0) was used for additional searches for prediction of secretion signals (Petersen et al., 2011). Conserved protein domain families (Pfam) were identified by searching through the Pfam family protein database (pfam_scan.pl tool with default settings) (Finn et al., 2014). Orphans were defined as sequences not having matches in the Pfam database or homologues in other organisms as revealed by BLASTP searches (Altschul et al., 1990) against the UniProt database (cut-off 1E< 105). Putative peptidases were annotated by searching the proteome of each fungus against the MEROPS database (Rawlings et al., 2012). y p Proteins encoding laccases (CAZy subfamily AA1_1) in all nine fungal genomes were retrieved from the CAZy database (http://www.cazy.org/). The 72 proteins were aligned with MAFFT (v.7.147) (Katoh & Standley, 2013) and subsequently trimmed with GBLOCKS (Talavera & Castresana, 2007) using options to reduce the stringency (–b1 = 2 –b2 = 2 –b3 = 8 –b4 = 5 –b5 = h –b6 = y). PROTTEST (v.2.4) (Abascal et al., 2005) was used to identify the most suitable evolutionary model. On the basis of the PROTTEST results, the Whelan and Goldman (WAG) protein substitution model with a gamma shape parame- ter and a proportion of invariant sites (P-Invar) was chosen for the phylogenetic reconstruction using RAXML with 1000 boot- strap replicates (Stamatakis, 2006). ITOL was used to visualize the tree and map the differential gene expression to the tree (Letunic & Bork, 2011). A phylogenetic analysis of the aspartate protease family was performed using the alignment of the Pfam domain PF00026 (eukaryotic aspartyl protease). Chemical analyses After reverse transcription into double- stranded cDNA and barcoding by means of the massively parallel signature sequencing protocol (Brenner et al., 2000), libraries were sequenced (RNA-Seq) using a HiSeq2000 instrument (Illu- mina Inc., San Diego, CA, USA) in single-read mode and with a read length of 50 bp (IGA Technology Services, Udine, Italy; http://www.igatechnology.com). The reads were mapped onto the corresponding genomes by means of TOPHAT (v.2.0.8b) (Kim et al., 2013). The transcript abundances were normalized using the R package DESeq (Anders & Huber, 2010) for each fungus by dividing the expression values by size factors to adjust for different sequence depth between the two conditions. The size factor for each sample was calculated as follows: the read count of each gene was divided by the geometric mean of the expression across the SOM and MMN samples. Significantly differentially expressed genes (SOM vs MMN) were identified with DESeq (t- test, false discovery rate, q-value < 0.01; Benjamini & Hochberg, 1995). The RNA-Seq data are deposited in the GEO database (http://www.ncbi.nlm.nih.gov/geo/) with accession number GSE64897. Identification of orthologues and phylogenetic analyses Identification of orthologues and phylogenetic analyses Orthologues were identified with the PROTEINORTHO program (Lechner et al., 2011). Principal component analysis (PCA) of orthologues was performed with the QLUCORE EXPLORER software (v.2.2; Qlucore AB, Lund, Sweden) with default settings. For rescaling of the gene expression data before the PCA, clustering analyses, and phylogenetic analyses, the expression values of the orthologues were normalized by means of the DESeq package (Anders & Huber, 2010) and were then log2(counts + 1) trans- formed. Orthologues were identified with the PROTEINORTHO program (Lechner et al., 2011). Principal component analysis (PCA) of orthologues was performed with the QLUCORE EXPLORER software (v.2.2; Qlucore AB, Lund, Sweden) with default settings. For rescaling of the gene expression data before the PCA, clustering analyses, and phylogenetic analyses, the expression values of the orthologues were normalized by means of the DESeq package (Anders & Huber, 2010) and were then log2(counts + 1) trans- formed. The construction of a species tree for the nine species included in this study was based on a phylogenetic analysis of 3148 one- to-one (1 : 1) orthologues. These orthologues were aligned with MAFFT (v.7.147) (Katoh & Standley, 2013) with default set- tings, and the resulting alignments were trimmed with GBLOCKS (v.0.91b) (Talavera & Castresana, 2007) and concatenated into a supermatrix. Chemical analyses The protein model was determined with PROTTEST (v.3.4) (Abascal et al., 2005) and RAXML-HPC (Stamatakis, 2006) with default settings, and the PROTGAMMALGF model was chosen to reconstruct the phylogenetic tree with 1000 bootstrap replicates. Chemical analyses (b) Principal component analysis (PCA) scores plot of the FTIR spectra of the SOM extract before (FH0) and after 7 d incubation with the ECM fungi and saprotrophic fungi (n = 3). (c) Pyrolysis-GC/ MS results (shown as sums of the major groups of organic compounds). The data are corrected for the total organic C concentration and normalized to the nonincubated SOM extract (FH0) (mean  SE; n = 3). The identified pyrolytic compounds are listed in Supporting Information Table S2. The inset shows the ratio of guaiacylacetone to trans- propenylguaiacol (Ox/C3-G) (grey bars), which is a marker of the degree of oxidation of guaiacyl lignin (Buurman et al., 2008). Bars with different lowercase letters are significantly different according to Tukey’s test (P < 0.05). The values are normalized to the nonincubated samples (mean  SE; n = 3). The species abbreviations are listed in the legend of Fig. 1. Wavenumber (cm ) PC 2 (12.2%) PC 1 (76.2 %) –1.5 –1.0 –0.5 0.0 0.5 1.0 1.5 –3.0 –2.0 –1.0 0.0 1.0 2.0 3.0 4.0 5.0 SEL SUL PAI HYP JAA HEC COP PIC LAB FH0 (b) (b) mean ± SE 0.0 0.2 0.4 0.6 0.8 1.0 1.2 FH0 PAI SUL HYP COP JAA Lignin residues Monoaromatics Polyaromatics N-compounds Polysaccharides Tannins 0.0 0.5 1.0 1.5 2.0 FH0 PAI SUL HYP COP JAA Ox/C3-G a cd d bc b b (c) (c) 0.0 0.2 0.4 0.6 0.8 FH0 PAI SUL HYP COP JAA Mini Kit (Qiagen, Hilden, Germany) with the RLC buffer and on-column DNase treatment, according to the manufacturer’s instructions. Total RNA was eluted in H2O and stored at 20°C until use. For quality assessments, all samples were inspected with an RNA 6000 Nano Kit on a 2100 Bioanalyzer (Agilent, Santa Transcriptome analysis After the incubation, the mycelium was collected, immediately frozen in liquid N2 and subsequently ground to a fine powder with a mortar. Total RNA was isolated using the RNeasy Plant After the incubation, the mycelium was collected, immediately frozen in liquid N2 and subsequently ground to a fine powder with a mortar. Total RNA was isolated using the RNeasy Plant New Phytologist (2016) 209: 1705–1719 www.newphytologist.com  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist Research 1709 Clara, CA, USA).  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Global transcriptional responses The transcriptional profiles of all fungi after growth on the SOM extract and on a mineral nutrient MMN medium were compared using RNA sequencing (Table S1). For comparison of the tran- scriptomes among the nine species, the genes were classified into orthologous groups (Table S4). In total, we identified 10 939 groups, of which 3148 were identified as putative 1 : 1 ortho- logues that were the best reciprocal BLAST hits shared by all nine species. The 1 : 1 orthologues constituted 14–25% of the total number of genes in each of the fungal genomes. The remaining genes were found in orthologous groups shared by two to eight species, in groups of so-called co-orthologues (i.e. genes that are duplicated within a lineage), or were species specific. Depending on the species, 16–29% of the transcripts were significantly up- regulated in the SOM extracts (Table S1), and between 23 and 32% of those were 1 : 1 orthologues (Table S4). To obtain an initial view of the expression patterns, we per- formed a PCA on the expression levels of the 1 : 1 orthologues. The PCA closely grouped the SOM- and MMN-grown samples for each species (Fig. S5). PC1 (which explained 15% of the varia- tion) clustered the Boletales species together and separated them from the species in the Jaapiales, Agaricales and Atheliales clades. PC2 (13% of the variation) separated the ECM fungi from the saprotrophs. To reconstruct the evolutionary trends in more detail, an NJ tree was constructed based on the distances of the expression levels of the 1 : 1 orthologues (Figs 1, S6). Consistent with the PCA results, the divergence of gene expression between a fungus grown on SOM extract and the same fungus grown on MMN medium was significantly less than the divergence between species, and the species were correctly separated into the four major clades. However, the topologies of the trees constructed from the expres- sion data and from the sequence data (species tree) were not always consistent (Fig. 1). In agreement with more extensive genome phy- logenies (Kohler et al., 2015), our species tree placed the ECM fungus P. involutus close to the BR species H. pinastri, whereas the expression tree clustered P. involutus and S. luteus. g y To compare the decomposition capacity of P. involutus and S. Chemical conversion of the SOM extract In the presence of glucose, all of the sampled ECM fungi grew and assimilated C and N from the SOM extract (Table S2; Figs S1a,b). The FTIR spectra of the SOM extract before and after a 7-d incubation with fungi showed marked differences, indicating significant conversion of the organic compounds (Fig. 2a). A PCA based on the FTIR spectra allowed us to group the repli- cates of each fungus and clearly separated the initial SOM extract from the material modified by the fungi (Fig. 2b). The first prin- cipal component (PC1) explained 76.2% of the total variability and separated the initial material from the incubated material. The FTIR spectra of the SOM extract were separated along the PC1 axis into a group showing spectral features dominated by polysaccharide bands and N–H bending bands (right) and a group showing spectral features dominated by carbonyl bands (left), which are indicative of oxidized organic matter (Fig. S2). The separation of the ECM species was associated with the amounts of C and N assimilated by the fungi (Fig. S1a). The sec- ond principal component (PC2) accounted for 12.2% of the total variance and separated the fungi into two groups: one group consisting of the long-distance-exploration ECM fungi (P. invo- lutus and S. luteus) and the closely related saprotrophic fungus Hydnomerulius pinastri and a second group containing the remaining ECM and saprotrophic species. PC2 was dominated by strong positive bands at 1510 cm1, which are indicative of aromatic ring compounds (Fig. S2). The spectra of the SOM extracts incubated with Serpula lacrymans deviated significantly from those of the other species along PC2, mainly as a result of the peak at 1300 cm1, which was attributed to esters. The two ECM boletes (P. involutus and S. luteus) were grouped close together by both PC1 and PC2. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Annotations In total, 323 proteins containing this domain were identified in the nine anal- ysed basidiomycete genomes. The domain sequences were extracted and retrieved using hmmalign in the HMMER3 package (v.3.1b1) (Eddy, 2011), and the sequences were subsequently aligned with MAFFT (v.7.147). The alignment was further trimmed with GBLOCKS with the settings described for the Annotations on gene models encoding enzymes active on carbohydrates (CAZymes) were retrieved from the Carbohy- drate-Active Enzymes database (CAZy; http://www.cazy.org/), including the extended set of auxiliary activities (AAs) to cover redox enzymes that act in conjunction with CAZymes (Cantarel et al., 2009; Levasseur et al., 2013). Annotations for various types of PODs in all nine genomes were retrieved from the PeroxiBase database (Fawal et al., 2013). Gene models rep- resenting tyrosinases were retrieved directly from the JGI database by the use of InterPro term IPR002227 as a search term. All gene models of CAZymes, auxiliary activities, PODs and tyrosinases detected were inspected manually, and the selected and filtered gene model in the JGI database was modi- fied if necessary. Genes encoding multidomain natural- product-biosynthesis enzymes (polyketide synthases, nonriboso- mal peptide synthetases and related enzymes) were annotated in a two-step process: first, on the basis of homology by means of BLAST and a conserved domain search (Marchler-Bauer et al., 2011) and, second, by manual inspection of each filtered gene model. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist New Phytologist Research 1710 (Fig. S3). Minute changes were detected in the FTIR spectra of the SOM extract incubated with C. puteana, observed as an increase in absorbance in the carbonyl region at 1710 cm1 accompanied by a decrease in absorbance in the spectral region at 1350–1450 cm1. Thus, the decomposition of the SOM was stimulated by glucose amendment in both the ECM and the saprotrophic species. proteins encoding laccases. A phylogenetic reconstruction using RAXML and the JTT model with 1000 bootstrap replicates was performed and the results were viewed with ITOL. The tree can be viewed online at http://itol.embl.de/external.cgi? tree=1302351965015151413446270. Results After growth, extracellular iron-reducing activity was detected in the SOM extract of all fungi except H. cylindrosporum (Fig. S4). Thus, during growth on the SOM extract, iron- reducing metabolites or iron-reducing enzymes were produced by most of the examined ECM fungi.  2015 The Authors New Phytologist  2015 New Phytologist Trust Global transcriptional responses The size of the circles indicates the number of genes in the orthologous groups within a given species (if any) and the black slice is proportional to the number of up- regulated genes. The arrows indicate 14 1 : 1 orthologues. The left panel shows the orthologous groups that were up-regulated in two to four species (sp.), and the middle and right panels show orthologous groups that were up-regulated uniquely in Paxillus involutus (PAI), Hydnomerulius pinastri (HYP) and Suillus luteus (SUL). Orthologous groups that were uniquely up-regulated in the other species are shown in Supporting Information Fig. S7. Annotations of orthologue clusters are shown in Table S6. Fig. 3 Phylogenetic distribution of soil organic matter (SOM)-up-regulated genes. The panel shows the expression and presence of SOM-up-regulated genes in orthologous groups (rows, fold change > 5 of pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium; q < 0.01; n = 3) shared by at least two species (columns). The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. The size of the circles indicates the number of genes in the orthologous groups within a given species (if any) and the black slice is proportional to the number of up- regulated genes. The arrows indicate 14 1 : 1 orthologues. The left panel shows the orthologous groups that were up-regulated in two to four species (sp.), and the middle and right panels show orthologous groups that were up-regulated uniquely in Paxillus involutus (PAI), Hydnomerulius pinastri (HYP) and Suillus luteus (SUL). Orthologous groups that were uniquely up-regulated in the other species are shown in Supporting Information Fig. S7. Annotations of orthologue clusters are shown in Table S6. (Table S6). Out of the 241 unique Pfam families that were identi- fied in these orthologues, none were up-regulated in all species. In total, 22 Pfam families were commonly up-regulated in at least three species including domains of transporters, proteases, oxidore- ductases and glycoside hydrolases (Table S7). in the nine analysed species. Of those genes, 387 were identified as having orthologues in at least two species, and 328 were found to be species specific (Table S5). The up-regulated orthologues were found in 321 orthologue clusters. None of these clusters contained genes that were up-regulated in all species. Global transcriptional responses Genes from two clusters were up-regulated in four species, those from six clusters in three species and those from 28 clusters in two species, and the remain- ing 285 orthologue clusters contained up-regulated genes from one species only (Figs 3, S7). The highly SOM-up-regulated orthologue clusters encoded a diverse set of protein families  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Global transcriptional responses luteus with that of the saprotrophic species in more detail, we analysed the SOM extracts using py-GC/MS (Fig. 2c; Table S3). For all of the tested fungi, the levels of the major classes of com- pounds present in the SOM decreased during incubation. Analy- sis of the pyrolysates related to lignin residuals revealed changes in their chemical structure during fungal growth; specifically, the ratio of guaiacylacetone to trans-propenylguaiacol, which indi- cates the oxidation state of guaiacyl-lignin building blocks, was higher in the pyrolysates from the SOM extract exposed to the ECM fungi P. involutus and S. luteus than in pyrolysates from SOM exposed to the saprotrophic BR Boletales species (H. pinas- tri and Coniophora puteana) and J. argillacea (Fig. 2c, inset). Analysis of the most highly up-regulated genes during SOM decomposition showed that a majority of them were found in orthologue clusters whose members were only up-regulated in a single species, or they were nonorthologues genes. We identified 715 genes that were at least five-fold SOM-up-regulated (pairwise comparisons in SOM extract vs MMN medium; q < 0.01; n = 3) In the absence of glucose, the FTIR spectra of the SOM extract incubated with P. involutus, S. luteus, H. pinastri and C. puteana were almost identical to the spectra of the initial material  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist Research 1711 1 2 3 4 5 6 7 Fold change > 5 HYP COP SEL PAI SUL PIC LAB HEC JAA HYP 1 2 3 4 5 6 7 Fold change > 5 HEC JAA es HYP COP SEL PAI SUL PIC LAB HEC JAA PAI HYP COP SEL PAI SUL PIC LAB HEC JAA SUL HYP COP SEL PAI SUL PIC LAB HEC JAA HYP 4 sp. 3 sp. 2 sp. HYP COP SEL PAI SUL PIC LAB HEC JAA 2–4 species HYP COP SEL PAI SUL PIC LAB HEC JAA PAI HYP COP SEL PAI SUL PIC LAB HEC JAA SUL Fig. 3 Phylogenetic distribution of soil organic matter (SOM)-up-regulated genes. The panel shows the expression and presence of SOM-up-regulated genes in orthologous groups (rows, fold change > 5 of pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium; q < 0.01; n = 3) shared by at least two species (columns). The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. Secretome Between 6 and 9% of all SOM-up-regulated genes (q < 0.01) were predicted to encode secreted proteins (Table S1). The New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist New Phytologist Research 1712 up-regulated secretome contained a large fraction of genes that were either species specific or shared with a limited set of other species (Tables S4). Still, the functional annotation terms of the proteins in the up-regulated secretome were similar. The SOM- induced secretomes contained a large fraction (38–60%) of genes encoding extracellular enzymes such as oxidases, hydrolases and peptidases (Fig. 4). Apart from these enzymes, the up-regulated secretomes also contained cell wall proteins including members of the hydrophobin family (Pfam domain PF01185). Hydrophobins are small (c. 100 amino acid (aa) residues) cys- teine-rich proteins that can self-assemble and form aggregations of proteins on surfaces of filamentous ascomycetes and basid- iomycetes (W€osten, 2001). Among the most highly expressed proteins in the up-regulated secretome were also a large number of small secreted proteins (SSPs; < 300 aa) that lacked both Pfam domains and homologues, so they can be referred to as orphans. them were significantly up-regulated in the SOM extract. More- over, P. involutus and S. luteus expressed several genes encoding PODs such as catalases, heme-containing haloperoxidases and one class of nonheme typical two-cysteine peroxiredoxin that was not found in the saprotrophic Boletales (Fig. S9; Table S9). By contrast, the BR Boletales highly expressed various iron reduc- tases (such as AA8) (Fig. 5). Laccaria bicolor, H. cylindrosporum and P. croceum expressed unique profiles of oxidoreductases that differed from the profiles of P. involutus and S. luteus (Figs 5, S8, S9). For example, the SOM-induced transcriptome of L. bicolor was characterized by CROs; that of H. cylindrosporum by low numbers and expression levels of laccases (AA1_1); and that of P. croceum by a compara- tively large number of GMCOs and secreted tyrosinases. Although putative class II PODs of L. bicolor, H. cylindrosporum and P. croceum were up-regulated on the SOM substrate, none of them was classified as classical class II PODs (a group that includes lignin PODs, manganese PODs and versatile PODs), which are typical for WR fungi (Table S8). The dye- decolourizing PODs were also up-regulated in L. bicolor, H. cylindrosporum and S. luteus (Fig. 5). Lignin- and carbohydrate-degrading enzymes Upon SOM decomposition, all of the examined ECM fungi expressed a range of genes encoding enzymes involved in the oxidative degradation of lignocellulose and the production of hydrogen peroxide: for example, laccases, which catalyse the oxidation of a wide range of organic compounds; glucose- methanol-choline oxidoreductases (GMCOs) and copper- radical oxidases (CROs), which reduce oxygen to peroxide and might support Fenton chemistry and PODs by supplying extracellular hydrogen peroxide; various PODs; and tyrosinases (Fig. 5; Tables S8, S9). Many of the enzymes that were up-regulated upon SOM decomposition are members of large gene families including lac- cases (Fig. 5). Phylogenetic analysis showed that the laccase fam- ily in P. involutus, S. luteus, L. bicolor and P. croceum contained many recent gene duplicates (i.e. paralogues) (Fig. 6a). Many of them were up-regulated during growth on the SOM extract (Fig. 6b). The saprotrophic species, as was expected, expressed several genes encoding GHs and carbohydrate esterases (CEs) that are predicted to be active on cellulose, cellulose/hemicelluloses, hemicelluloses and starch (Figs 5, S10a; Table S10). By contrast, the ECM expressed a limited set of genes encoding CAZymes Distinctive differences in the expression patterns of oxidore- ductases were found between the ECM fungi and the sapro- trophic Boletales (Figs 5, S8). Compared with the BR species, P. involutus and S. luteus expressed more laccases and several of 0 20 40 60 80 100 PAI SUL COP HYP SEL LAB HEC PIC JAA Oxidoreductases Hydrolases Peptidases Other enzymes Cell wall proteins Miscellaneous No Pfam Orphans Proportions (%) Fig. 4 Functional categories of genes encoding secreted proteins and which are up-regulated during growth on soil organic matter (SOM) extract. Shown is the proportion of proteins annotated as oxidases, hydrolases, peptidases, other enzymes, and cell wall proteins that were significantly up- regulated as revealed by RNA-Seq analysis (pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium; q < 0.01; n = 3). The category ‘Miscellaneous’ includes proteins with a diverse set of conserved protein family (Pfam) domains that could not be annotated as enzymes or cell wall proteins. Orphans are putative proteins that lack both Pfam domains and homologues. The species abbreviations are listed in the legend of Fig. 1. The total numbers of SOM-up-regulated genes are shown in Supporting Information Table S1.  2015 The Authors New Phytologist  2015 New Phytologist Trust Lignin- and carbohydrate-degrading enzymes The complete sets of enzymes are shown in Supporting Information Figs S8–S10 and Tables S8–S10. The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. Fig. 5 Soil organic matter (SOM) regulation of selected genes encoding auxiliary redox activities/enzymes (AAs), peroxidases and carbohydrate-modifying enzymes acting on cellulose. Shown is the average ratio of gene expression (n = 3) of pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium. Within each subpanel, one for each species, the boxes represent individual gene models found within the family, and the colours show the fold change in expression. The complete sets of enzymes are shown in Supporting Information Figs S8–S10 and Tables S8–S10. The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. and only a few of them were SOM-up-regulated (Fig. S10b). CAZy genes induced by the addition of SOM extract differed between ECM species. Among the induced genes were LPMOs (formerly GH61), which catalyse the oxidative cleavage of cellulose (L. bicolor), GH12 endoglucanases (P. croceum and L. bicolor), a GH5-7 mannanase (S. luteus), GH79 b- glucuronidases, GH3 b-glucosidases, which are involved in the cleavage of cellobiose to glucose, and various other hemicellulose- and starch-related genes. Secondary metabolites All nine examined fungi contained genes encoding enzymes with possible roles in the synthesis of secondary metabolites (Table S13). The total number of polyketide synthase and nonri- bosomal peptide synthetase genes varied from three to four in L. bicolor and P. croceum to 16 in S. lacrymans, and several of those genes were up-regulated upon SOM decomposition (Fig. S13). With the exception of C. puteana, the Boletales species contained genes encoding quinone synthetases. Two of these genes were significantly up-regulated in P. involutus, three were up-regulated in S. luteus and one was up-regulated in H. pinastri. Peptidases Depending on the species, 4–13% of the SOM-induced secre- tome constituted peptidases (Fig. S11; Table S11). Although the most common types were endopeptidases of the aspartate pro- tease A1 subfamily, each species expressed a diverse set of endopeptidases (including subfamilies M36, S8 and S53) and exopeptidases (M28, S9 and S28). The variation in the expres- sion patterns of peptidases among species was smaller than that of oxidoreductases. A phylogenetic analysis of the A1 aspartate protease family showed that this family contained both gene duplicates shared with other species (i.e. orthologues) as well par- alogues. Members of both categories were SOM-up-regulated (Fig. S12; Table S12).  2015 The Authors New Phytologist  2015 New Phytologist Trust Lignin- and carbohydrate-degrading enzymes New Phytologist (2016) 209: 1705–1719  2015 The Authors 0 20 40 60 80 100 PAI SUL COP HYP SEL LAB HEC PIC JAA Oxidoreductases Hydrolases Peptidases Other enzymes Cell wall proteins Miscellaneous No Pfam Orphans Proportions (%) New Phytologist (2016) 209: 1705–1719 www.newphytologist.com 0 20 40 60 80 100 PAI SUL COP HYP SEL LAB HEC PIC JAA Oxidoreductases Hydrolases Peptidases Other enzymes Cell wall proteins Miscellaneous No Pfam Orphans Proportions (%) Fig. 4 Functional categories of genes encoding secreted proteins and which are up-regulated during growth on soil organic matter (SOM) extract. Shown is the proportion of proteins annotated as oxidases, hydrolases, peptidases, other enzymes, and cell wall proteins that were significantly up- regulated as revealed by RNA-Seq analysis (pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium; q < 0.01; n = 3). The category ‘Miscellaneous’ includes proteins with a diverse set of conserved protein family (Pfam) domains that could not be annotated as enzymes or cell wall proteins. Orphans are putative proteins that lack both Pfam domains and homologues. The species abbreviations are listed in the legend of Fig. 1. The total numbers of SOM-up-regulated genes are shown in Supporting Information Table S1. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist Research 1713 Fig. 5 Soil organic matter (SOM) regulation of selected genes encoding auxiliary redox activities/enzymes (AAs), peroxidases and carbohydrate-modifying enzymes acting on cellulose. Shown is the average ratio of gene expression (n = 3) of pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium. Within each subpanel, one for each species, the boxes represent individual gene models found within the family, and the colours show the fold change in expression. The complete sets of enzymes are shown in Supporting Information Figs S8–S10 and Tables S8–S10. The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. y g Fig. 5 Soil organic matter (SOM) regulation of selected genes encoding auxiliary redox activities/enzymes (AAs), peroxidases and carbohydrate-modifying enzymes acting on cellulose. Shown is the average ratio of gene expression (n = 3) of pairwise comparisons in SOM extract vs modified Melin–Norkrans (MMN) medium. Within each subpanel, one for each species, the boxes represent individual gene models found within the family, and the colours show the fold change in expression. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Discussion In one of the earliest articles on ECM symbiosis, Frank stated that there is ‘no doubt that mycorrhizal fungi account for a major fraction of litter turnover, in order to supply nutrients to the trees’ (translation from German) (Frank, 1894). However, ECM fungi have primarily been considered as biotrophs that obtain their energy and C from the host plant and have a limited capac- ity to affect the decomposition of organic material, and the decomposition of such material has been assumed to be carried out almost exclusively by free-living saprotrophic fungi. The New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist Research 1714 0.1 PIC6 PIC11 PIC10 PIC5 PIC9 SEL3 COP6 COP7 COP4 COP1 PAI13 PAI4 PAI8 PAI6 PAI3 PAI9 PAI11 HYP9 SUL1 SUL3 PAI1 HYP1 HYP2 PAI12 HYP3 SEL1 COP5 SUL6 PAI2 HYP4 SUL15 SUL8 SUL7 SUL5 SUL16 SUL14 SUL10 SUL12 SUL4 SUL2 HEC2 HEC1 LAB7 LAB9 LAB2 LAB4 LAB6 LAB3 PIC2 PIC1 PIC7 PIC8 PIC3 PIC4 JAA1 LAB1 LAB5 LAB8 SUL13 PAI7 HYP5 HYP7 HYP8 PAI10 COP3 SUL11 SUL9 PAI5 HYP6 SEL2 SEL4 98 100 100 71 100 80 96 100 97 96 100 99 55 88 100 79 71 71 100 97 100 100 98 99 99 87 98 100 99 100 67 51 97 65 98 99 83 90 99 92 98 99 82 100 100 53 100 96 58 100 100 100 96 56 100 100 100 78 97 60 79 100 73 P P P P P P P (a) (a) Fig. 6 Phylogeny and expression patterns of laccases. (a) An unrooted maximum likelihood tree of protein sequences of 71 laccases retrieved from sequences of genome models (cf. Supporting Information Table S8). Bootstrap values are shown for branches having > 50% support. The gene models were assigned trivial names according to the fold change (from highest to lowest) in pairwise comparisons in soil organic matter (SOM) extract vs modified Melin–Norkrans (MMN) medium. Vertical bars labelled with a ‘P’ indicate paralogue clades with > 50% bootstrap support grouping at least three sequences coming from only one species. (b) SOM regulation of the 71 laccase genes. The bars show the average fold change (n = 3) in pairwise comparisons in media containing SOM extract vs MMN medium. Along the x- axis are gene models from the different fungi. For each species, the models are arranged from highest to lowest fold changes.  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Discussion GMCOs and CROs) that are thought to be involved in generating H2O2 in Fenton-type reactions in BR fungi (Martinez et al., 2009; Levasseur et al., 2013). Genes encoding enzymes more frequently connected with lignin decay in WR fungi were also expressed, including laccases, dye- decolourizing PODs and haloperoxidases (Hatakka & Hammel, 2010; Hofrichter et al., 2010). Though the observed oxidative modifications of the SOM dur- ing decomposition were similar across the examined ECM i h f h id i diff d d l d h short- and medium-distance-exploration types. Differences in N uptake between exploration types have been observed in field studies using isotopes (Hobbie & Agerer, 2010). Despite the sim- ilarity in the chemical transformation of the SOM extract, each species expressed a different set of transcripts, which suggests that the decomposition mechanisms have diverged over evolutionary time. For the most part, the divergence in the SOM-induced expression profiles increased with evolution: that is, closely related species displayed profiles that were more similar than dis- tantly related species. This is expected not only because of the evolutionary distance between the examined ECM lineages but also because of the diverse nutritional backgrounds from which these ECM lineages have evolved (Matheny et al., 2006; Kohler et al., 2015). Analysis of the phylogenetic distribution of the SOM-up-regulated genes indicates that the diversification of the decomposition mechanism involves several evolutionary pro- cesses. First, diversification is associated with differences in the regulation of orthologues genes that are shared between distantly related species. Second, the decomposition mechanism has evolved by incorporating enzymes from different families with apparently similar catalytic properties. For example, the exam- ined species expressed genes encoding various enzymes from the laccase, GMCO and CRO gene families that all could presum- ably generate the H2O2 that is needed for Fenton chemistry. Third, diversification is associated with the expression of species-specific genes. Such genes include recent gene duplicates (i.e. paralogues) of gene families that are conserved across the Agaricomycetes, as exemplified by the laccase gene family, but also orphans which lack both Pfam domains and homologues in other species. The observed species-specific changes in gene expression levels i hi h B l l h l i h id i PAI SUL SEL HYP COP LAB HEC PIC JAA Fold change (SOM/MMN) (b) Fig.  2015 The Authors New Phytologist  2015 New Phytologist Trust Discussion 6 Continued New Phytologist Research 1 Research 1715 PAI SUL SEL HYP COP LAB HEC PIC JAA Fold change (SOM/MMN) (b) g. 6 Continued hytologist Fig. 6 Continued Fig. 6 Continued Spectroscopic analysis and genome-wide transcriptome profil- ing showed that the decomposition of SOM by the analysed ECM fungi involved oxidative processes and that these processes were similar to those of saprotrophic fungi. The chemical changes in the organic material were reflected in marked modifications of the polysaccharide and carbonyl regions of the FTIR spectra. In particular, the decrease in the polysaccharide content coincided with an increase in C=O linkages, indicating partial oxidation of the material during its decomposition (Weiland & Guyonnet, 2003). The SOM decomposed by species within the Boletales clade was analysed using py-GC/MS, which showed that the ECM species modified the side-chain structures of lignin-derived molecules, as expected by a Fenton mechanism similar to that of BR saprotrophs (Yelle et al., 2011). The detection of extracellular iron-reducing activity further supported a Fenton mechanism (Hatakka & Hammel, 2010; Eastwood et al., 2011). Notably, all ECM species except H. cylindrosporum had extracellular iron- reducing activity upon growth on the SOM extract, which agrees with experimental studies showing that Fenton chemistry is pre- sent in Agaricomycetes outside BR fungi (Tanaka et al., 2007; Gomez-Toribio et al., 2009; Arantes et al., 2011). During SOM decomposition, the ECM fungi expressed a number of oxidore- ductases (e.g. GMCOs and CROs) that are thought to be involved in generating H2O2 in Fenton-type reactions in BR fungi (Martinez et al., 2009; Levasseur et al., 2013). Genes encoding enzymes more frequently connected with lignin decay in WR fungi were also expressed, including laccases, dye- decolourizing PODs and haloperoxidases (Hatakka & Hammel, 2010; Hofrichter et al., 2010). short- and medium-distance-exploration types. Differences in N uptake between exploration types have been observed in field studies using isotopes (Hobbie & Agerer, 2010). Despite the sim- ilarity in the chemical transformation of the SOM extract, each species expressed a different set of transcripts, which suggests that the decomposition mechanisms have diverged over evolutionary time. For the most part, the divergence in the SOM-induced expression profiles increased with evolution: that is, closely related species displayed profiles that were more similar than dis- tantly related species. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com Discussion The arrows indicate that the gene is found in a clade of paralogues. A fold change value of 1 indicates equal transcription level in the two media. The species abbreviations and clade affiliations (colour coded) are shown in the legend of Fig. 1. limited decomposing ability of ECM fungi is supported by recent findings showing that they have lost many of the genes that encode plant cell wall-degrading enzymes in their saprotrophic ancestors (Kohler et al., 2015). However, here we demonstrate that ECM fungi representing at least four distant origins of sym- biosis have retained a significant capacity to decompose SOM using oxidative mechanisms. Although recent laboratory and field studies suggest that ECM fungi can act as SOM decomposers (Rineau et al., 2012; B€odeker et al., 2014; Phillips et al., 2014; Lindahl & Tunlid, 2015), we show that this capacity is widespread in ECM fungi, expanding the roles of these fungi in the forest C cycle. New Phytologist (2016) 209: 1705–1719 www.newphytologist.com  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist New Phytologist Spectroscopic analysis and genome-wide transcriptome profil- ing showed that the decomposition of SOM by the analysed ECM fungi involved oxidative processes and that these processes were similar to those of saprotrophic fungi. The chemical changes in the organic material were reflected in marked modifications of the polysaccharide and carbonyl regions of the FTIR spectra. In particular, the decrease in the polysaccharide content coincided with an increase in C=O linkages, indicating partial oxidation of the material during its decomposition (Weiland & Guyonnet, 2003). The SOM decomposed by species within the Boletales clade was analysed using py-GC/MS, which showed that the ECM species modified the side-chain structures of lignin-derived molecules, as expected by a Fenton mechanism similar to that of BR saprotrophs (Yelle et al., 2011). The detection of extracellular iron-reducing activity further supported a Fenton mechanism (Hatakka & Hammel, 2010; Eastwood et al., 2011). Notably, all ECM species except H. cylindrosporum had extracellular iron- reducing activity upon growth on the SOM extract, which agrees with experimental studies showing that Fenton chemistry is pre- sent in Agaricomycetes outside BR fungi (Tanaka et al., 2007; Gomez-Toribio et al., 2009; Arantes et al., 2011). During SOM decomposition, the ECM fungi expressed a number of oxidore- ductases (e.g. Discussion Taken together, the results of this study suggest that the pri- mary function of the oxidative decomposition system of ECM fungi is to open up SOM complexes and thereby mobilize sequestered proteins and other nutrient sources. However, the oxidation may also influence the functionality of the SOM and the stability of soil C. Oxidative transformations can make the SOM available for further degradation by saprotrophic microor- ganisms that contain the enzymatic machinery for depolymeriza- tion and complete mineralization. Alternatively, oxidation of biomolecules present in the aqueous pool of SOM will enhance their polarity and chemical reactivity, and such modifications could promote the formation of stable supramolecular aggregates or organic matter–mineral complexes (Kleber & Johnson, 2010; Kleber et al., 2015). These processes and the widespread presence of ECM fungi (H€ogberg & H€ogberg, 2002) suggest that ECM fungi can have an important role in the turnover and stabilization of organic matter in forest soils. An implication from this study is that the presently used methods for measuring the decomposition activities of ECM fungi in the field that are based on measuring enzyme activities or transcript levels of oxidases such as laccases, phenol oxidases and class II PODs (e.g. B€odeker et al., 2014; Phillips et al., 2014) do not capture the diversity of oxidative mechanisms. Our results suggest that ECM fungi decompose SOM using mechanisms involving the action of both oxidative enzymes and oxygen radicals formed by nonenzymatic Fenton reactions. Further studies are needed to identify the key enzymes and molecular components of these oxidation reactions, and how their expression levels correlate with the chemical modifications of SOM. Data from such experiments will probably generate novel biomarkers that can accurately predict the decomposition activities of ECM fungi in situ. g In agreement with previous studies, addition of glucose stimulated the oxidative decomposition of organic matter in both ECM fungi (Rineau et al., 2012) and BR fungi (Varela et al., 2003). Accordingly, radical-based oxidation mechanisms in ECM and saprotrophic fungi can be described as co- metabolic processes that require growth on a source of utiliz- able C and energy. In saprotrophs, metabolic C is liberated from dead organic matter by the action of hydrolytic enzymes, such as CAZymes. Polysaccharides were decomposed by H. pinastri and C. puteana during growth on the SOM extract (Fig. 2c). Discussion In addition, progressive increases in C : N ratios during ECM colonization of organic matter support selective assimilation of N (Lindahl et al., 2007; Clemmensen et al., 2013). However, upon growth on the SOM extract, the ECM species in our data set expressed low levels of a few CAZymes (e.g. mannanases and endoglucanses) involved in plant cell wall decomposition. This suggests that some hydrolytic decomposition of carbohydrates could have taken place during SOM decomposition. In saprophytic fungi, the expression of plant cell wall-degrading CAZymes is com- monly repressed in the presence of glucose (Aro et al., 2005). Additional studies are needed to show if such enzymes are repressed in a similar way in ECM fungi and if their activity can release metabolic C during SOM decomposition. saprotrophy in H. pinastri, is not clear (Kohler et al., 2015). Hence, the similar oxidative decomposition mechanisms of P. involutus and S. luteus might be a result of convergent evolu- tion from two independent saprotrophic ancestors. Alternatively, if the ECM lifestyle evolved only once between P. involutus and S. luteus, then the saprotrophic decomposition mechanism of H. pinastri represents a reversal from an ECM ancestor. Such an ancestor probably contained a larger array of genes encoding saprotrophy-related enzymes such as LPMOs or GH28 pecti- nases than do the extant ECM Boletales (Kohler et al., 2015). The extensive SOM-induced expression of laccases and the expansion of this family in the genomes of ECM fungi as com- pared with that in the BR wood decayers suggest that laccases play an important role in the decomposition of SOM. This possi- bility is supported by the fact that laccases have low redox poten- tials that are suitable for oxidizing small lignin- and phenolic-like compounds present in SOM (Martinez et al., 2005; Hatakka & Hammel, 2010). By contrast, in the absence of low-molecular- weight redox mediators, laccases cannot depolymerize macro- molecular lignin found in native wood substrates (Martinez et al., 2005; Hatakka & Hammel, 2010). However, in addition to their possible involvement in the degradation of organic material, lac- cases may also have several other functions in fungi, for example in pigment formation, fruiting body development, defence reac- tions and detoxification (K€ues & Ruhl, 2011). Discussion This is expected not only because of the evolutionary distance between the examined ECM lineages but also because of the diverse nutritional backgrounds from which these ECM lineages have evolved (Matheny et al., 2006; Kohler et al., 2015). Analysis of the phylogenetic distribution of the SOM-up-regulated genes indicates that the diversification of the decomposition mechanism involves several evolutionary pro- cesses. First, diversification is associated with differences in the regulation of orthologues genes that are shared between distantly related species. Second, the decomposition mechanism has evolved by incorporating enzymes from different families with apparently similar catalytic properties. For example, the exam- ined species expressed genes encoding various enzymes from the laccase, GMCO and CRO gene families that all could presum- ably generate the H2O2 that is needed for Fenton chemistry. Third, diversification is associated with the expression of species-specific genes. Such genes include recent gene duplicates (i.e. paralogues) of gene families that are conserved across the Agaricomycetes, as exemplified by the laccase gene family, but also orphans which lack both Pfam domains and homologues in other species. Though the observed oxidative modifications of the SOM dur- ing decomposition were similar across the examined ECM species, the extent of the oxidation differed and was related to the growth rate and the rate of N uptake by the ECM fungi. The rapidly growing, long-distance-exploration types oxidized SOM and assimilated N to a greater extent than did the slow-growing, The observed species-specific changes in gene expression levels within the Boletales suggest that selection may shape oxidative decomposition mechanisms over a short evolutionary time. Whether P. involutus and S. luteus represent two independently evolved ECM lineages, or a single ECM origin and a reversal to New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist New Phytologist Research 1716 coding for cell-wall-degrading enzymes in ECM species (Kohler et al., 2015) seems to support this. This hypothesis is also supported by field studies showing that ECM root tips only accumulate trace levels of 14C-labelled leaf litter (Treseder et al., 2006). That ECM fungi obtain most of the C from their host plant is also indicated by 14C dating showing that the structural C was synthesized from recent photosynthate while proteins of ECM sporocarps were built from older pools of soil organic N (Hobbie et al., 2013). Discussion However, the very low extent of oxidation of the SOM extract in the absence of glucose suggests that the amount of C that was released during the limited time of incubation (7 d) was too low to support significant levels of oxidation. In ECM fungi, metabolic C is primarily provided by the plant host and the overall reduced number of genes  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com References Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104–2105. Goodell B, Daniel G, Jellison J, Qian Y. 2006. Iron-reducing capacity of low- molecular weight compounds produced in wood by fungi. Holzforschung 60: 630–636. Agerer R. 2001. Exploration types of ectomycorrhizae. A proposal to classify ectomycorrhizal systems according to their patterns of differentiation and putative ecological importance. Mycorrhiza 11: 107–114. Hatakka A, Hammel KE. 2010. Fungal biodegradation of lignocellulose. In: Hofrichter M, ed. The mycota vol. X, industrial applications. Berlin, Germany: Springer-Verlag, 319–340. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. Hibbett DS, Bauer R, Binder M, Giachini AJ, Hosaka K, Justo A, Larsson E, Larsson KH, Lawrey JD, Miettinen O et al. 2014. Agaricomycetes. In: McLaughlin DJ, Spatafora JW, eds. The mycota vol. VII, systematics and evolution part A, 2nd edn. Berlin, Germany: Springer- Verlag, 373–429. Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biology 11: R106–R111. Arantes V, Milagres AM, Filley TR, Goodell B. 2011. Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions. Journal of Industrial Microbiology and Biotechnology 38: 541–555. Hobbie EA, Agerer R. 2010. Nitrogen isotopes in ectomycorrhizal sporocarps correspond to belowground exploration types. Plant and Soil 327: 71–83. Aro N, Pakula T, Penttil€a M. 2005. Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiology Reviews 29: 719–739. Hobbie EA, Ouimette AP, Schuur EAG, Kierstead D, Trappe JM, Bendiksen K, Ohenoja E. 2013. Radiocarbon evidence for the mining of organic nitrogen from soil by mycorrhizal fungi. Biogeochemistry 114: 381–389. Baldrian P. 2008. Enzymes of saprotrophic basidiomycetes. In: Boddy L, Frankland JC, van West British P, eds. Mycological Society symposia series volume 28. Amsterdam, the Netherlands: Elsevier, 19–41. Hofrichter M, Ullrich R, Pecyna MJ, Liers C, Lundell T. 2010. New and classic families of secreted fungal heme peroxidases. Applied Microbiology and Biotechnology 87: 871–897. Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B (Methodological) 57: 289–300. H€ogberg MN, H€ogberg P. 2002. Extramatrical ectomycorrhizal mycelium contributes one-third of microbial biomass and produces, together with associated roots, half of the dissolved organic carbon in a forest soil. New Phytologist 154: 791–795. References B€odeker IT, Clemmensen KE, de Boer W, Martin F, Olson A, Lindahl BD. 2014. Ectomycorrhizal Cortinarius species participate in enzymatic oxidation of humus in northern forest ecosystems. New Phytologist 203: 245–256. Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. B€odeker IT, Nygren CM, Taylor AF, Olson A, Lindahl BD. 2009. ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi. ISME Journal 3: 1387–1395. Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. 2013. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology 14: R36–R14. Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M et al. 2000. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nature Biotechnology 18: 630–634. Kleber M, Eusterhues K, Keiluweit M, Mikutta C, Mikutta R, Nico PS. 2015. Mineral–organic associations: formation, properties, and relevance in soil environments. Advances in Agronomy 130: 1–140. Buurman P, Jongman AG, Nierop KGJ. 2008. Comparison of Michigan and Dutch podzolized soils: organic matter characterization by micromorphology and pyrolysis-GC/MS. Soil Science Society of America Journal 72: 1344– 1356. Kleber M, Johnson MG. 2010. Advances in understanding the molecular structure of soil organic matter: implications for interactions in the environment. Advances in Agronomy 106: 77–142. environment. Advances in Agronomy 106: 77–142. Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canb€ack B, Choi C, Cichocki N, Clum A et al. 2015. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics 47: 410–415. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Research 37: D233–D238. Clemmensen KE, Bahr A, Ovaskainen O, Dahlberg A, Ekblad A, Wallander H, Stenlid J, Finlay RD, Wardle DA, Lindahl BD. 2013. Roots and associated fungi drive long-term carbon sequestration in boreal forest. Science 339: 1615– 1618. Korripally P, Timokhin VI, Houtman CJ, Mozuch MD, Hammel KE. 2013. Evidence from Serpula lacrymans that 2, 5-Dimethoxyhydroquinone is a lignocellulolytic agent of divergent brown rot basidiomycetes. Applied and Environmental Microbiology 79: 2377–2383. Davidson EA, Galloway LF, Strand MK. 1987. Assessing available carbon: comparison of techniques across selected forest soils. Author contributions F.S., C.N., T.J., P.P. and A.T. designed the research; F.S., C.N., M.E., F.R., M.S., R.C., T.J., P.P. and A.T. performed the research; F.S., C.N., J. Braesel, M.S., F.R., B.C., D.F., G.L., J. Bentzer, D.H., B.H., D.A., T.J., D.S.H., F.M., P.P. and A.T. analysed the data; F.S., C.N., D.F., T.J., P.P. and A.T. wrote the paper. F.S., C.N., T.J., P.P. and A.T. designed the research; F.S., C.N., M.E., F.R., M.S., R.C., T.J., P.P. and A.T. performed the research; F.S., C.N., J. Braesel, M.S., F.R., B.C., D.F., G.L., J. Bentzer, D.H., B.H., D.A., T.J., D.S.H., F.M., P.P. and A.T. analysed the data; F.S., C.N., D.F., T.J., P.P. and A.T. wrote the paper. Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martinez AT, Otillar R, Spatafora JW, Yadav JS et al. 2012. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336: 1715–1719. Frank B. 1894. Die Bedeutung der Mykorhiza Pilze f€ur die gemeine Kiefer. Forstwissenschaftliches Centralblatt 16: 185–190. Gomez-Toribio V, Garcia-Martin AB, Martinez MJ, Martinez AT, Guillen F. 2009. Induction of extracellular hydroxyl radical production by white-rot fungi through quinone redox cycling. Applied and Environmental Microbiology 75: 3944–3953. Acknowledgements This work was supported by grants from the Swedish Research Council (VR) (to A.T. and P.P.), the Knut and Alice Wallen- berg Foundation (to A.T.), the strategic research programme Biodiversity and Ecosystem Services in a Changing Climate (BECC) (to A.T.) and the French National Research Agency through the Laboratory of Excellence ARBRE (ANR-11- LABX-0002-01) (to F.M.). Genome sequencing was conducted by the US Department of Energy Joint Genome Institute, sup- ported by the Office of Science of the US Department of Energy. We also thank Annegret Kohler and Nicolas Cichocki for handling the fungal cultures, and principal investigators from the Mycorrhizal Genomics Initiative Consortium for pro- viding the strain cultures and access to the genome sequences before publication.  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist New Phytologist Research 1717 Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J et al. 2014. Pfam: the protein families database. Nucleic Acids Research 42: D222–D230.  2015 The Authors New Phytologist  2015 New Phytologist Trust References Communications in Soil Science and Plant Analysis 18: 45–65. K€ues U, Ruhl M. 2011. Multiple multi-copper oxidase gene families in basidiomycetes – what for? Current Genomics 12: 72–94. Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ. 2011. Proteinortho: detection of (co-)orthologs in large-scale analysis. BMC Bioinformatics 12: 124. Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M et al. 2011. The plant cell wall- decomposing machinery underlies the functional diversity of forest fungi. Science 333: 762–765. Letunic I, Bork P. 2011. Interactive Tree of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Research 39: W475– W478. Eddy SR. 2011. Accelerated profile HMM searches. PLoS Computational Biology 7: e1002195. Levasseur A, Drula E, Lombard V, Coutinho PM, Henrissat B. 2013. Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnology for Biofuels 6: 1–14. Fawal N, Li Q, Savelli B, Brette M, Passaia G, Fabre M, Mathe C, Dunand C. 2013. PeroxiBase: a database for large-scale evolutionary analysis of peroxidases. Nucleic Acids Research 41: D441–D444.  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist Research 1718 nuclear magnetic resonance spectroscopy. Environmental Science & Technology 41: 876–883. Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, H€ogberg P, Stenlid J, Finlay RD. 2007. Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New Phytologist 173: 611–620. nuclear magnetic resonance spectroscopy. Environmental Science & Technology 41: 876–883. Smith SE, Read DJ. 2008. Mycorrhizal symbiosis. London, UK: Academic Press. Lindahl BD, Tunlid A. 2015. Ectomycorrhizal fungi – potential organic matter decomposers, yet not saprophytes. New Phytologist 205: 1443–1447. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690. Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese- Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR et al. 2011. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Research 39: D225–D229. Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564–577. Tanaka H, Yoshida G, Baba Y, Matsumura K, Wasada H, Murata J, Agawa M, Itakura S, Enoki A. 2007. Supporting Information Phillips LA, Ward V, Jones MD. 2014. Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests. ISME Journal 8: 699–713. Additional supporting information may be found in the online version of this article. Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jørgensen CI, Tovborg M, Anthonsen A et al. 2011. Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proceedings of the National Academy of Sciences, USA 108: 15079–15084. Fig. S1 Assimilation of C and N by the fungi during growth on SOM extract. Rawlings ND, Barrett AJ, Bateman A. 2012. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research 40: D343–D350. Fig. S2 PCA loadings of the FTIR spectra of the SOM. Read DJ, Perez-Moreno J. 2003. Mycorrhizas and nutrient cycling in ecoystsems – a journey towards relevance? New Phytologist 157: 475–492. Fig. S3 The effects of glucose on SOM decomposition by Coniophora puteana, Hydnomerulius pinastri, Paxillus involutus and Suillus luteus. Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R et al. 2014. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proceedings of the National Academy of Sciences, USA 111: 9923–9928. Fig. S4 Iron-reducing activity produced during growth on SOM extracts. Rineau F, Roth D, Shah F, Smits M, Johansson T, Canb€ack B, Olsen PB, Persson P, Grell MN, Lindquist E et al. 2012. The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry. Environmental Microbiology 14: 1477–1487. Fig. S5 PCA based on the expression patterns of orthologues. Fig. S6 Neighbour-joining gene expression trees. Rineau F, Shah F, Smits MM, Persson P, Johansson T, Carleer R, Troein C, Tunlid A. 2013. Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus. ISME Journal 7: 2010–2022. Fig. S7 Phylogenetic distribution of SOM-up-regulated genes. Fig. S8 Expression profiles of genes encoding AAs. Schmidt MW, Torn MS, Abiven S, Dittmar T, Guggenberger G, Janssens IA, Kleber M, K€ogel-Knabner I, Lehmann J, Manning DA et al. 2011. Persistence of soil organic matter as an ecosystem property. Nature 478: 49–56. Fig. S9 Expression profiles of genes encoding peroxidases and tyrosinases. Shah F, Rineau F, Canb€ack B, Johansson T, Tunlid A. 2013. References Characterization of a hydroxyl-radical-producing glycoprotein and its presumptive genes from the white-rot basidiomycete Phanerochaete chrysosporium. Journal of Biotechnology 128: 500–511. Martin F, Aerts A, Ahren D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V et al. 2008. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452: 88–92. Treseder KK, Torn MS, Masiello CA. 2006. An ecosystem-scale radiocarbon tracer to test use of litter carbon by ectomycorrhizal fungi. Soil Biology and Biochemistry 38: 1077–1082. Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P et al. 2009. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences, USA 106: 1954–1959. Trojanowski J, Haider K, Huttermann A. 1984. Decomposition of 14C labelled lignin, holocellulose and lignocellulose by mycorrhizal fungi. Archives of Microbiology 139: 202–206. Martinez AT, Speranza M, Ruiz-Duenas FJ, Ferreira P, Camarero S, Guillen F, Martinez MJ, Gutierrez A, del Rio JC. 2005. Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. International Microbiology 8: 195–204. Varela E, Mester T, Tien M. 2003. Culture conditions affecting biodegradation components of the brown-rot fungus Gloeophyllum trabeum. Archives of Microbiology 180: 251–256. Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZV, Yang ZL, Slot JC, Ammirati JF, Baroni TJ et al. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982–995. Weiland JJ, Guyonnet R. 2003. Study on chemical modifications and fungi degradation of thermally modified wood using DRIFT spectroscopy. Holz als Roh- und Werkstoff 61: 216–220. W€osten HA. 2001. Hydrophobins: multipurpose proteins. Annual Review of Microbiology 55: 625–646. Nannipieri P, Eldor P. 2009. The chemical and functional chracterization of soil N and its biotic components. Soil Biology and Biochemistry 41: 2357–2369. Norkrans B. 1950. Studies in growth and cellulolytic enzymes of Tricholoma. Symbolae Botanicae Upsaliensis 11: 1–126. Yelle DJ, Wei D, Ralph J, Hammel KE. 2011. Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta. Environmental Microbiology 13: 1091–1100. Paradis E, Claude J, Strimmer K. 2004. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289–290. Petersen TN, Brunak S, von Heijne G, Nielsen H. 2011. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nature Methods 8: 785–786. Supporting Information The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus. New Phytologist 200: 875–887. Fig. S10 Expression profiles of genes encoding selected CAZymes. Simpson AJ, Song G, Smith E, Lam B, Novotny EH, Hayes MH. 2007. Unraveling the structural components of soil humin by use of solution-state New Phytologist (2016) 209: 1705–1719 www.newphytologist.com  2015 The Authors New Phytologist  2015 New Phytologist Trust  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist Research 1719 Fig. S11 Expression profiles of genes encoding extracellular pep- tidases. Fig. S11 Expression profiles of genes encoding extracellular pep- tidases. Fig. S12 Phylogeny and expression patterns of aspartate pro- teases. Fig. S12 Phylogeny and expression patterns of aspartate pro- teases. Fig. S13 Expression profiles of selected genes encoding biosyn- thetic enzymes involved in secondary metabolism. Fig. S13 Expression profiles of selected genes encoding biosyn- thetic enzymes involved in secondary metabolism. Table S1 Fungi used in this study and the assessment of the tran- scribed fraction of their genomes based on RNA-Seq data Table S2 Carbon and nitrogen concentrations of the SOM extract Table S3 List of pyrolytic compounds identified by py-GC/MS analysis of the SOM extract Table S3 List of pyrolytic compounds identified by py-GC/MS analysis of the SOM extract Please note: Wiley Blackwell are not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing material) should be directed to the New Phytologist Central Office. Table S4 Numbers of gene models in various (co)-orthologous groups Table S5 Numbers of highly SOM-up-regulated genes Table S5 Numbers of highly SOM-up-regulated genes  2015 The Authors New Phytologist  2015 New Phytologist Trust New Phytologist (2016) 209: 1705–1719 www.newphytologist.com New Phytologist is an electronic (online-only) journal owned by the New Phytologist Trust, a not-for-profit organization dedicated to the promotion of plant science, facilitating projects from symposia to free access for our Tansley reviews. New Phytologist is an electronic (online-only) journal owned by the New Phytologist Trust, a not-for-profit organization dedicated to the promotion of plant science, facilitating projects from symposia to free access for our Tansley reviews. Regular papers, Letters, Research reviews, Rapid reports and both Modelling/Theory and Methods papers are encouraged. 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Characterization of meta-Cresol Purple for spectrophotometric pH measurements in saline and hypersaline media at sub-zero temperatures
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Characterization of meta-Cresol Purple for spectrophotometric pH measurements in saline and hypersaline media at sub-zero temperatures Socratis Loucaides1,2, Victoire M. C. Rèrolle2, Stathys Papadimitriou3, Hilary Kennedy3, MatthewC Mowlem2 AndrewG Dickson4 MarthaGledhill1,5 & Eric P Achterberg1,5 Received: 2 August 2016 Accepted: 13 April 2017 Published: xx xx xxxx Received: 2 August 2016 Accepted: 13 April 2017 Published: xx xx xxxx Socratis Loucaides1,2, Victoire M. C. Rèrolle2, Stathys Papadimitriou3, Hilary Kennedy3, Matthew C. Mowlem2, Andrew G. Dickson4, Martha Gledhill1,5 & Eric P. Achterberg1,5 Accurate pH measurements in polar waters and sea ice brines require pH indicator dyes characterized at near-zero and below-zero temperatures and high salinities. We present experimentally determined physical and chemical characteristics of purified meta-Cresol Purple (mCP) pH indicator dye suitable for pH measurements in seawater and conservative seawater-derived brines at salinities (S) between 35 and 100 and temperatures (T) between their freezing point and 298.15 K (25 °C). Within this temperature and salinity range, using purified mCP and a novel thermostated spectrophotometric device, the pH on the total scale (pHT) can be calculated from direct measurements of the absorbance ratio R of the dye in natural samples as = − + − −       pH k e R e R log log 1 ( ) T T e e 2 2 1 3 2 = − + − −       pH k e R e R log log 1 ( ) T T e e 2 2 1 3 2 Based on the mCP characterization in these extended conditions, the temperature and salinity dependence of the molar absorptivity ratios and −  k e log( ) T 2 2 of purified mCP is described by the following functions: e1 = −0.004363 + 3.598 × 10−5T, e3/e2 = −0.016224 + 2.42851 × 10−4T + 5.05663 × 10−5(S − 35), and −  k e log( ) T 2 2 = −319.8369 + 0.688159 S −0.00018374 S2 + (10508.724 − 32.9599 S + 0.059082S2) T−1 + (55.54253 − 0.101639 S) ln T −0.08112151T. This work takes the characterisation of mCP beyond the currently available ranges of 278.15 K ≤ T ≤ 308.15 K and 20 ≤ S ≤ 40 in natural seawater, thereby allowing high quality pHT measurements in polar systems. About half of the anthropogenic carbon dioxide (CO2) released to the atmosphere since the industrial revolution has been absorbed by the oceans1. This process continues today and buffers atmospheric CO2 levels, thereby partly alleviating global warming. www.nature.com/scientificreports www.nature.com/scientificreports www.nature.com/scientificreports Received: 2 August 2016 Accepted: 13 April 2017 Published: xx xx xxxx www.nature.com/scientificreports/ www.nature.com/scientificreports/ saturation states of calcite and aragonite7, 8. The contemporary ocean shows the lowest buffering capacity (highest Revelle factor) in polar waters9, and it is projected that by the end of the century these regions will become under- saturated with respect to aragonite10, 11.l p g Although high latitude waters contribute disproportionally to the oceanic CO2 uptake5, 12, the flux estimates are based on data available from periods of seasonal sea ice retreat and parts of the ocean which are ice-free13. Over the last few years the role of sea ice processes in CO2 cycling has been increasingly recognised. Sea ice is a porous medium and within its pores and channels are gas pockets and residual high ionic strength liquids (brines) at thermal equilibrium with the ice14. The brine, enriched in seawater solutes rejected from the ice during freezing14, is the habitat of sympagic phototrophic and heterotrophic organisms15, 16. It has been estimated that in first- and multi-year ice packs of the Southern Ocean, primary production results in the fixation of 36 Tg C yr−1 into biomass17. It is now accepted that the sea ice pack and land fast ice are to a measurable extent CO2 permea- ble and that internal physical, chemical, and biological processes taking place during ice formation and melting may play a significant role in CO2 cycling in high latitude oceans18–20. For example, gravity drainage of CO2-rich brines during ice formation may be a significant and so far unaccounted sink of dissolved inorganic carbon (DIC) in surface waters with estimates in the order of 200–500 Tg C yr−1 for the (Arctic and Antarctic) polar oceans21. Carbonate mineral precipitation in brines during ice formation may present a potentially significant source of total alkalinity (TA) to polar surface waters following their dissolution when sea ice melts, generating an additional sink (~33–83 Tg C yr−1) of atmospheric CO2, which is equivalent to 17–42% of the air-sea CO2 flux in open high latitude ocean waters22. In addition to these mechanisms (gravity drainage, CaCO3 formation in sea ice), based on recent direct measurements of the CO2 exchange between sea ice and the atmosphere as a function of ice temperature, the Antarctic ice pack, during seasonal warming, was estimated to take up the equivalent of 58% of the atmospheric CO2 uptake of the open Southern Ocean surface waters south of 50°S23. www.nature.com/scientificreports/ The interplay between biological and physicochemical processes makes carbonate chemistry within sea ice highly complex, leading to strong gradients in pH between the ice and underlying waters with potentially significant impacts on ocean-atmosphere CO2 fluxes15, 18, 24–26. p 2l Our ability to characterize the marine carbonate system in open ocean waters has undergone major advance- ments during the last few decades, but our understanding of CO2 cycling in ice brine conditions remains limited due to theoretical and methodological constraints25. Sea ice brines exhibit a much wider range of salinity (S) and temperature (T) changes within short temporal and spatial scales than the open ocean. Specifically, brine S-T con- ditions in sea ice extend to the hypersaline region (S > 100) at temperatures much colder than the freezing tem- peratures of seawater (271.23 K at S = 35 and 0 dbar pressure)18, 20, 27. Such large ranges in T and S make the use of traditional ex situ pH and pCO2 (partial pressure of CO2) measurement techniques a challenge, because in situ temperature corrections are required post-analysis using relationships and constants that have not been validated for below- zero temperatures. The most robust method for back-calculating pH and pCO2 to in situ T relies on the solution of a thermodynamic model that describes the marine CO2 system28. This requires the knowledge of the first and second acidity constant of carbonic acid at in situ T and S. Empirical data for these constants, however, are not available to date for T < 274.15 K and S > 50 in natural seawater while non-linear extrapolation to low T and high S can potentially result in large errors in calculated pH and pCO2 values29. g p y g p p 2 Experimental determination of the carbonic acid acidity constants can be facilitated by measurements of all four variables (DIC, TA, pH, pCO2) of the marine carbonate system at the S and T of interest. Although meas- urements of TA, DIC, and pCO2 at sub-zero temperatures and hyper-saline conditions are possible using current methodologies and instrumentation28, spectrophotometric pH measurements are limited to the range of condi- tions for which indicators have been characterised. For example, the characterization of the commonly used indi- cator dye meta-Cresol Purple (mCP) is only valid for 278.15 K ≤ T ≤ 308.15 K and 20 ≤ S ≤ 4030, 31. www.nature.com/scientificreports/ Furthermore, pH measurements at low temperatures using conventional optical apparatus (spectrophotometers, glass cells, lenses etc.) are highly problematic due to the formation of condensation along the optical path.h ) g y p g p p The purpose of this work was to facilitate pH measurements in cold and hypersaline conditions, such as those encountered in the oceanic cryosphere. To this end, we extended the characterization of the pH indicator mCP (in its purified form) to below-zero temperatures down to the freezing point (267.15 K) of S = 100 brines. The salinity maximum and temperature minimum were set by the S-T range in natural sea ice brines with con- servative ionic composition and inter-ionic ratios relative to surface oceanic water. This development became possible by the recent electrochemical characterization of the pH of the Tris/HCl buffer system32 and the use of a novel, custom-made microfluidic spectrophotometric system. The lens-less design of the microfluidic chip pre- vents condensation and is thus ideal for pH measurements at a lower range of temperatures. Our work facilitates high quality in-situ measurements of pH, thereby furthering our understanding of the carbonate system in polar aquatic environments. Characterization of meta-Cresol Purple for spectrophotometric pH measurements in saline and hypersaline media at sub-zero temperatures Socratis Loucaides1,2, Victoire M. C. Rèrolle2, Stathys Papadimitriou3, Hilary Kennedy3, MatthewC Mowlem2 AndrewG Dickson4 MarthaGledhill1,5 & Eric P Achterberg1,5 The influx of CO2 into the ocean causes acidification of surface waters and leads to a decline in the saturation states of carbonate minerals (i.e. aragonite and calcite), posing a threat to marine calcifying species2–4. The capacity of ocean waters to absorb CO2 increases towards the poles because of the higher solubility of gasses at lower temperatures5. High freshwater inputs into polar waters, from ice and snow melt, reduce the seawater’s buffering capacity, as indicated by the Revelle factor6, leading to a decline in pH and 1University of Southampton, Waterfront Campus, Southampton, SO14 3ZH, UK. 2National Oceanography Centre, European Way, Southampton, SO14 3ZH, UK. 3Ocean Sciences, College of Natural Sciences, Bangor University, Menai Bridge, LL59 5AB, UK. 4Marine Physical Laboratory, Scripps Institution of Oceanography, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0244, USA. 5GEOMAR Helmholtz Centre for Ocean Research, 24148, Kiel, Germany. Correspondence and requests for materials should be addressed to S.L. (email: s.loucaides@noc.ac.uk) Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 1 Methods ifi i Sulfonephthaleine pH indicator dyes are weak acids (H2I) where the acidic and basic components exhibit different colours and, therefore, absorb light at distinctly different wavelengths. For mCP, H2I is pink, HI− is yellow and I−2 is purple. The relative distribution of the indicator species is pH-dependent and can be expressed in terms of chemical equilibria with corresponding dissociation constants: + ⇔ = − + + − HI H H I K H I H HI [ ] [ ][ ] , (1) T 2 1 2 + ⇔ = − + − − + − I H HI K HI H I [ ] [ ][ ] , (2) T 2 2 2 + ⇔ = − + + − HI H H I K H I H HI [ ] [ ][ ] , (1) T 2 1 2 (1) + ⇔ = − + − − + − I H HI K HI H I [ ] [ ][ ] , (2) T 2 2 2 (2) where brackets denote concentration. At typical surface seawater pH (~8.1), mCP is present only as I−2 and HI− because pK1 T ~2 and pK2 T~ 8. At a sample pH close to the log of the indicator’s second dissociation constant (pK2 T), pH can be measured with considerable accuracy (better than 0.001) by measuring light absorption at the wavelengths of maximum absorbance of the acidic (HI−) and basic (I−) indicator species (434 and 578 nm, respectively).h p y Measurements of pH using indicator dyes require that their optical properties are carefully characterized. The characterization of mCP involves the determination under different T and S conditions of the molar absorptivity constants (εi λ) of each indicator species (i) at wavelengths (λ) of 434 and 578 nm and the second dissociation constant K2 T (equation 2). Methods ifi i Purification of meta-Cresol Purple. The mCP indicator dye was obtained as a sodium salt (Acros Organics). The indicator was purified using the preparative HPLC procedure described in Liu et al.31 using a Shimadzu HPLC system. In preparative mode, the system consisted of a system controller (SCL-10Avp), a pre- parative scale pump (LC-8A), a Rheodyne 3725i manual injector, and a diode array detector (SPD M10Avp) with a preparative flow cell. In analytical mode, the preparative pump was replaced with an analytical scale pump (LC-10ADvp) and the manual injector with an automatic injector (SIL 10AD). The HPLC column (Primesep B2) used for the purification of mCP was from SIELC Technologies. The Primesep B2 column uses a mixed- mode resin to separate analytes via ion-exchange and hydrophobic mechanisms. A preparative column (Part B2–220.250.0510, 22 × 250 mm, particle size 5 μm) was used for the purification procedure while a smaller Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 2 www.nature.com/scientificreports/ analytical column (Part B2-46-250.0510, 4.6 × 250 mm, particle size 5 μm) was used for the qualitative analysis of the purified indicator.hi pi The mobile phase used for the purification was 70% acetonitrile (HPLC grade; Fisher Chemical) and 30% deionised water (Milli-Q, Millipore, MQW). A small amount (0.05%) of trifluoroacetic acid (TFA; ReagentPlus®; Sigma-Aldrich) was used as a mobile phase modifier. The un-purified mCP sodium salt was dissolved in the mobile phase at a concentration of 70 mM. The solution was sonicated in an ultrasonic bath for 15 min to ensure complete dissolution of the indicator. For each purification cycle, 7 mL of indicator solution was injected into the system. The pump flow rate was adjusted to 31 mL min−1 and the pure mCP was collected at its characteristic retention time (approximately 20 min). The pure mCP was separated from the solvent using a rotary evaporator at 40 °C under partial vacuum. Complete evaporation of the mobile phase was achieved after 2–3 h and the recovery efficiency was about 60%. The purified mCP (in acid form) was collected from the evaporation flask and its purity was tested using an analytical HPLC procedure. This was done by injecting 0.020 mL of 70 mM purified mCP (in mobile phase) through the analytical HPLC system at a flow rate of 1.5 mL min−1. The mCP purity was assessed by comparing the chromatographs of the purified and unpurified material. Characterization Procedure. Methods ifi i Solution pH can then be calculated from the absorbance (Aλ) ratio at 434 and 578 nm ( = R A A 578 434) using: = − +    − −    pH k R e e Re log( ) log (3) T T 2 1 2 3 (3) where the parameters e1, e2 and e3 are the molar absorptivity ratios defined by: ε ε ε ε ε ε = = = − − − − − − e e e ; ; (4) HI HI I HI I HI 1 578 434 2 578 434 3 434 434 2 2 (4) The derivation of equation 3 is described in detail in Zhang and Byrne33. Equation 3 can be rearranged to ref. 31: = − +    − −    pH k e R e R log( ) log 1 (5) T T e e 2 2 1 3 2 (5) which simplifies the characterization procedure since e3/e2 is determined as a single parameter in a basic solution (pH ~12) where I2− is the predominant indicator species so that: which simplifies the characterization procedure since e3/e2 is determined as a single parameter in a basic solution pH ~12) where I2− is the predominant indicator species so that: ε ε = − − e e (6) I I 3 2 434 578 2 2 ε ε = − − e e I I 3 2 434 578 2 2 (6) Applying Beer-Lambert’s law, and as long as ε − I 434 2 and ε − I 578 2 are measured in the same solutions, e3/e2 simply becomes the ratio between − A I 434 2 and − A I 578 2 eliminating the need for precise knowledge of the concentration of mCP. This, however, presents its own challenge since the absorbance of I2− at 578 nm is much higher than at 434 nm making it difficult to determine both absorbances accurately from a single measurement. To overcome this, we measured the absorbances of the same solutions in two different absorption cells: 1-cm-path length for − A I 578 2 and a 10-cm-path length for − A I 434 2 . This ensured that absorption measurements of both mCP species were within acceptable ranges and eliminated errors associated with mCP dilution preparation uncertainties. Methods ifi i However, this buffer was increasingly basic at low temperatures and high salinities (e.g., pHT = 8.09 at T = 298.15 K and S = 35; pHT = 9.19 at T = 269.15 K and S = 70)32. So, two sets of less alkaline buffers, each set with distinctly different non-equimolal Tris/HCl composition (0.06 m Tris, 0.04 m HCl; and 0.10 m Tris, 0.06 m HCl) were prepared and used for the determination of − k e log( ) T 2 2 at S = 35–100. The (0.06 m Tris, 0.04 m HCl) buffers s were characterized electro- chemically at Scripps32 and used for the mCP characterization experiments at S = 35, 45, 50, 60, 70, 85, and 100. Their pHT was calculated from the reported best-fit function, pHT = 144.4361–1.0809685 S + 0.006023772 S2 + ( 0.0618411−0.000817397 S + 4.27187 × 10−6 S2) T + (−27.233738 + 0.2329236 S–0.001281138 S2) lnT, with a standard error of 0.002 pH unit32. The (0.10 m Tris, 0.06 m HCl) buffers were used for additional mCP character- ization experiments at S = 35 and 45. The pHT of the (0.10 m Tris, 0.06 m HCl) buffers was not characterized electrochemically (except for the S = 45 buffer at 273.15 K, see below) but instead computed from the equimolal pHT (as calculated from the best-fit equation cited above) via the Henderson–Hasselbalch equation32, 34. This computation gives pHT = 8.785 at 273.15 K for the S = 45 (0.10 m Tris, 0.06 m HCl) buffer, which agrees well with the value determined electrochemically (pHT = 8.783) as described in Papadimitriou et al.32. This approach is also supported from the excellent agreement between thus computed and electrochemically determined pHT values for the (0.06 m Tris, 0.04 m HCl) buffers32. Spectrophotometric measurements. The experimental set-up used for the determination of molar absorptivity constants (εi λ) is illustrated in Fig. 1. The microfluidic flow cells used for the characterization were manufactured in tinted poly (methyl methacrylate) (PMMA). The fabrication procedure is described in detail in Ogilvie et al.35 and Floquet et al.36. Two absorption cells (1 cm and 10 cm) with cross sections of 700 µm × 700 µm were micro-milled into a single PMMA chip. A tungsten halogen light source (Ocean Optics HL-2000) was used for the absorption measurements in conjunction with a 434 nm LED used to boost light intensity at the lower end of the spectrum. Methods ifi i Absorbance measurements were made at mCP concentrations between 10 and 600 µM (n = 6–10) in NaCl solutions buffered with 0.02 M CH3COONa with ionic strength equivalent to that of seawater and brines up to S = 110. The pH of these solutions was adjusted to 4.5 by addition of small amounts of 1 M HCl. The maximum salinity used for the determination of e1 and e3/e2 (S = 110) brackets the maximum salinity at which the pHT of the Tris/HCl buffers (S = 100) has been determined32 (see below). The latter salinity sets the upper limit of the salinity range for the − k e log( ) T 2 2 determined in this study. 2 2 The molar extinction coefficients (ε − I 434 2 , ε ε − − , I HI 578 434 2 and ε − IH 578 ) were determined using the Beer-Lambert Law rearranged to ε = = λ × λ i A b C a b mCP , where a is the slope of the linear regression of absorbances versus concentrations of the mCP dilution series and b is the length of the optical cell. Although molar extinction coefficients have been traditionally determined through repeat absorption measurements of a single mCP concentration (as in a single point calibration) we have opted for a multi-point regression approach to establish the linear range of our meas- urements and to account for intercept offsets.h pf The − k e log( ) T 2 2 term in equation 5 was determined by the measurement of the absorbance ratio = R A A 578 434 in Tris/HCl buffers in synthetic seawater and synthetic seawater-derived brines (S = 35–100). The buffers were pre- pared and their pH was characterized electrochemically on the total proton scale (pHT) in the 267.15 K to 298.15 K temperature range with the Harned cell at the Marine Physical Laboratory, Scripps Institution of Oceanography, University of California San Diego32. The equimolal Tris/HCl buffer (0.08 m Tris, 0.04 m HCl) has been previously used for this purpose31, and the salinity and temperature dependence of its pHT in the current, extended S–T range has been determined [equimolal Tris/HCl: pHT = 536.08338–54.732367 S + 0.8518518 S2 +  (0.1675218−1.72224095 × 10−2 S + 2.66720246 × 10−4 S2) T + (−10873.5234 + 1369.56485 S−21.34442 S2) T−1 + (−95.04342 + 9.7014355 S–0.1509014 S2) lnT (standard error: 0.001 pH unit)]32. Methods ifi i Maximum errors in the length of each absorption cell were 5 µm which translates to a maximum error of 0.045% in e1 or e3/e2 and of 0.00002 in pH. Applying Beer-Lambert’s law, and as long as ε − I 434 2 and ε − I 578 2 are measured in the same solutions, e3/e2 simply becomes the ratio between − A I 434 2 and − A I 578 2 eliminating the need for precise knowledge of the concentration of mCP. This, however, presents its own challenge since the absorbance of I2− at 578 nm is much higher than at 434 nm making it difficult to determine both absorbances accurately from a single measurement. To overcome this, we measured the absorbances of the same solutions in two different absorption cells: 1-cm-path length for − A I 578 2 and a 10-cm-path length for − A I 434 2 . This ensured that absorption measurements of both mCP species were − A I 578 2 and a 10-cm-path length for − A I 434 2 . This ensured that absorption measurements of both mCP species were within acceptable ranges and eliminated errors associated with mCP dilution preparation uncertainties. Maximum errors in the length of each absorption cell were 5 µm which translates to a maximum error of 0.045% in e1 or e3/e2 and of 0.00002 in pH. Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 3 www.nature.com/scientificreports/ Absorption measurements for the determination of e3/e2 were made in mCP solutions with ionic composi- tion similar to that of seawater and pH adjusted to ~12 with 1 M NaOH. To avoid precipitation of magnesium, sulphur and carbonate salts at high pH and salinities, MgCl2 was replaced with CaCl2 and Na2SO4 and NaHCO3 with NaCl. The ionic strength of the solutions was adjusted accordingly to match that of seawater and brines up to S = 110. The e3/e2 was determined by measuring A434 and A578 in a series (n = 6–10) of mCP dilutions from 5–50 µM concentration. µ We followed the same approach as described above for the determination of e1, using the 1 cm cell to deter- mine − A HI 434 and the 10 cm cell for − A HI 578 . Methods ifi i Elution time (min) 0 10 20 30 40 50 60 Absorbance 0 2000 4000 6000 8000 10000 Un-purified Purified Elution time (min) 0 10 20 30 40 50 60 Absorbance 0 2000 4000 6000 8000 10000 Un-purified Purified Figure 2. HPLC chromatogram of un-purified (red line) and purified (blue line) mCP. Note that traces of a component eluted at approximately 36 minutes are still present in the purified indicator. Figure 2. HPLC chromatogram of un-purified (red line) and purified (blue line) mCP. Note that traces of a component eluted at approximately 36 minutes are still present in the purified indicator. mCP addition on the buffer pH was estimated by measuring pH over a wide range of mCP to buffer mixing ratios (1:25 to 1:80) and using this data to regress back to a theoretical pH where mCP concentration was zero. This range of mixing ratios was obtained from the dispersion of mCP in Tris/HCl buffer within the microfluidic chan- nels37. The measurements for the determination of − k e log T 2 2 were conducted at 273.15 K and below-zero temper- atures to near the freezing point of the synthetic buffer solutions, as well as at 298.15 K, 283.15 K, and 278.15 K for overlap and direct comparison with the existing data set for purified mCP in Liu et al.31 An estimate of the freez- ing point of the synthetic buffer solutions was computed from the empirical absolute salinity-temperature rela- tionship of thermally equilibrated sea ice brines38, SA = 1000 [1−(54.11/t)]−1 where t is the temperature in °C. mCP addition on the buffer pH was estimated by measuring pH over a wide range of mCP to buffer mixing ratios (1:25 to 1:80) and using this data to regress back to a theoretical pH where mCP concentration was zero. This range of mixing ratios was obtained from the dispersion of mCP in Tris/HCl buffer within the microfluidic chan- nels37. Methods ifi i The measurements for the determination of − k e log T 2 2 were conducted at 273.15 K and below-zero temper- atures to near the freezing point of the synthetic buffer solutions, as well as at 298.15 K, 283.15 K, and 278.15 K for overlap and direct comparison with the existing data set for purified mCP in Liu et al.31 An estimate of the freez- ing point of the synthetic buffer solutions was computed from the empirical absolute salinity-temperature rela- tionship of thermally equilibrated sea ice brines38, SA = 1000 [1−(54.11/t)]−1 where t is the temperature in °C. Methods ifi i A linear array photodiode spectrophotometer (USB4000, Ocean Optics, UK) was used as a detector. Both the light source and detector were connected to the microfluidic flow cell with 600 µm diame- ter optical fibres (Thorlabs, USA). The flow cell was submerged in a water bath (Grant TX150) filled with 15% ethylene glycol solution. The temperature was kept constant (±0.02 °C) and was monitored continuously using a precision thermometer (ASL F250 MKII). The lens-less design of the PMMA microfluidic flow cell allowed for uncompromised optical measurements of pH (no condensation issues) and superior thermostatic control at near-freezing temperatures. For the determination of the molar absorptivity constants (εi λ), experimental solutions were volumetrically premixed with mCP indicator using calibrated pipettes in 20 mL glass vials with silicone/PTFE septum tops. The vials were kept on a rack which was submerged in the water bath. Solutions were siphoned from the vials through a 0.7 mm i.d. PTFE capillary tube into the flow cell using a 1 mL disposable syringe connected to the outlet of the flow cell. The flow cell was flushed with 2 mL of the experimental solution between measurements. The absorption spectrum was recorded in replicate (n = 5) using LabVIEW® software. Reference measurements were performed in experimental solutions without added indicator. For the determination of − k e log T 2 2, the = R A A 578 434 was determined inTris/HCl buffers using the microfluidic pH sensor as described in Rérolle et al.37 but with the same spectrophotometer and light source described above. For each measurement, 4 µL of the 4 mM mCP solution was mixed with 900 µL Tris/HCl buffer. The impact of the Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 4 www.nature.com/scientificreports/ Figure 1. Experimental setup used for the determination of the molar absorptivity ratios e1 and e3/e2. The microfluidic flow cells and vials with mCP solutions are submerged in a 15% ethylene glycol thermostated bath. The light is transmitted from the light source to the flow cells and to the spectrophotometer through 600 µm diameter optical fibres (Thorlabs, USA). Figure 1. Experimental setup used for the determination of the molar absorptivity ratios e1 and e3/e2. The microfluidic flow cells and vials with mCP solutions are submerged in a 15% ethylene glycol thermostated bath. The light is transmitted from the light source to the flow cells and to the spectrophotometer through 600 µm diameter optical fibres (Thorlabs, USA). = −. + . × − e 0 004363 3 598 10 T, 1 5 = −. + . × − e 0 004363 3 598 10 T, 1 5 = −. + . × − e 0 004363 3 598 10 T, 1 5 Although at pH 4.5 the dominant indicator species is HI−, small absorbance contributions at 434 and 578 nm from I2− and H2I have not been accounted for in our experiments. This may explain why, between 278.15 K and 308.15 K, the best-fit equation (7) above produces e1 values between 20% and 10%, respectively, higher than those of Liu et al.31 (Fig. 3), who found that removing this bias reduced their e1 values by a similar magnitude (14–18%). The I2− and H2I absorbance contributions are, nonetheless, relatively small, and their effect on pH measurement is minor (<0.0008 pH units) at high R values (>0.7) and slightly larger (up to 0.0034 pH units) at low R values (0.1–0.7)31. Refinement of e1 to account for the contributions of I2− and H2I is possible using an iterative proce- dure and experimental determinations of ε H I 434 2 , ε H I 578 2 , and the K1 of mCP31. This, however, requires careful and laborious experiments offering only minor gain in pH measurement performance especially at pH > 7.5. The potential error in the e1 computation from equation (7) above due to the unaccounted absorbance contributions of I2− and H2I is not necessarily propagated to the final pH determination (equation 5) but is likely “calibrated out” during the determination of − k e log( ) T 2 2 as described subsequently.if g 2 2 Changes in salinity have no significant effect on e1 between S = 35 and S = 110 (Fig. 3), consistent with the findings of Liu et al.31. Generally, e1 has a minor influence on the calculation of pH at high pH values (>8). At pH 8, it is possible to disregard the temperature dependence of e1 and use an average value with no significant impact on pH (<0.001 pH units) or disregard it altogether (e1 = 0) with only a minor effect on pH (0.002 pH units). e3/e2 as a function of temperature and salinity. The e3/e2 term in equation 5 is influenced by both the ionic strength and ionic composition31 and, for this reason, was determined in an electrolyte solution with near-seawater composition and carefully adjusted ionic strength. Results and Discussioni Purification of meta-Cresol Purple. Impurities in indicator dyes result in significant uncertainties in measured pH values31, 39. Analyses have shown that commercially available mCP indicators contain different types and quantities of light absorbing impurities, which could lead to pH offsets as large as 0.01 pH units. Therefore, characterizations of un-purified mCP are batch-specific and only valid for pH measurements using the same indicator batch. Measurements generated using uncharacterised un-purified mCP can be post-corrected as long as stocks of the un-purified indicator used are archived31. The HPLC purification procedure developed by Liu et al.31 was closely replicated here, yielding approximately 150 mg of purified mCP from each injection. Analysis of the un-purified mCP indicator following the analytical HPLC protocol of Liu et al.31 revealed a near identical chromatogram with the exception of an additional peak eluted at about 50 min (Fig. 2). Analysis of the purified material using the same protocol showed complete removal of impurities, with an exception of trace amounts (<8%) of a component eluted at 36 min. Similar residual profiles have been found after purification but have been reported to have practically no effect (<0.001 pH unit) on pH measurements in buffer solutions40. Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 5 www.nature.com/scientificreports/ T (K) 265 270 275 280 285 290 295 300 e1 0.0040 0.0045 0.0050 0.0055 0.0060 0.0065 0.0070 T (oC) -5 0 5 10 15 20 25 S 35 S 60 S 85 S 110 Figure 3. Values of e1 as a function of temperature, obtained in NaCl solutions buffered with CH3COONa (pH ~4.5) with ionic strengths equivalent to salinities of 35, 60, 85 and 110. The dashed line represents the e1 relationship determined by Liu et al.31. T (K) 265 270 275 280 285 290 295 300 e1 0.0040 0.0045 0.0050 0.0055 0.0060 0.0065 0.0070 T (oC) -5 0 5 10 15 20 25 S 35 S 60 S 85 S 110 Figure 3. Values of e1 as a function of temperature, obtained in NaCl solutions buffered with CH3COONa (pH ~4.5) with ionic strengths equivalent to salinities of 35, 60, 85 and 110. The dashed line represents the e1 relationship determined by Liu et al.31. Molar absorptivity ratios as a function of temperature and salinity. e1 as a function of tempera- ture. The temperature dependence of e1 for 267.15 K ≤ T ≤ 298.15 K and 35 < S < 110 is relatively small (Fig. Results and Discussioni 3) and is described by the best-fit equation: Molar absorptivity ratios as a function of temperature and salinity. e1 as a function of tempera- ture. The temperature dependence of e1 for 267.15 K ≤ T ≤ 298.15 K and 35 < S < 110 is relatively small (Fig. 3) and is described by the best-fit equation: = −. + . × − e 0 004363 3 598 10 T, (7) 1 5 (7) = −. + . × − e 0 004363 3 598 10 T, 1 5 The pH was adjusted to ~12 with NaOH so that only the basic (I2−) form of mCP was present and interferences from HI− and H2I were negligible. The tempera- ture and salinity dependence of e3/e2 (Fig. 4) for 267.15 K < T < 298.15 K and 35 < S < 110 can be described by: = −. + . × + . × − − − e e S / 0 016224 2 42851 10 T 5 05663 10 ( 35) (8) 3 2 4 5 (8) The relationship provides e3/e2 values that are in agreement with those reported by Liu et al.31; at S = 35 and T = 298.15 K, the difference between the values obtained from equation 8 and from the relationship in Liu et al.31 is 0.0006, which corresponds to a pH discrepancy of less than 0.001 for pH values lower than 8.3. This discrep- ancy becomes even smaller at lower temperatures. At higher salinities, however, the deviation between the e3/e2 predicted by the equation of Liu et al.31 and its value computed from equation 8 above increases to about 0.005, equivalent to ΔpH = 0.010, at S = 100. The expression for e3/e2 by Liu et al.31 was optimized for S between 20 and 40, which consequently results in an enhanced discrepancy with our findings at higher salinities. Extrapolation of the Liu et al.31 e3/e2 relationship to salinities higher than S = 40 is therefore not advisable. Equation 8 was not experimentally validated at S < 35; nevertheless, it agrees well with that of Liu et al.31 at S = 20 (the low end of their experimental range), with a maximum discrepancy at 273.15 K of 0.0006 (ΔpH = 0.002).h p g p y p The pH values obtained using equation 5 are sensitive to variations in e3/e2 and, therefore, experimental deter- mination requires due care. The multi-point determination of the molar absorptivities of I2− (ε − I 434 2 , ε − I 578 2 ) showed that the intercept of the regression of absorbance versus concentration cannot always be assumed as zero. We have observed small but significant intercept offsets in the e3/e2 determination experiments that, if ignored (e.g., through single point determination), could result in pH errors of ca. 0.001 pH unit. It is not clear what the source Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 6 www.nature.com/scientificreports/ Figure 4. = −. + . × − e 0 004363 3 598 10 T, 1 5 Values of e3/e2 (a) as a function of temperature, and (b) salinity at 0 °C. The measurements were obtained at pH 12 in solutions with near-seawater composition and ionic strength equivalent to salinities 35, 60, 85, and 110. The yellow square in panel (a) represents the e3/e2 value reported by Liu et al.30 for S = 35 and T = 298.15 K. Figure 4. Values of e3/e2 (a) as a function of temperature, and (b) salinity at 0 °C. The measurements were obtained at pH 12 in solutions with near-seawater composition and ionic strength equivalent to salinities 35, 60, 85, and 110. The yellow square in panel (a) represents the e3/e2 value reported by Liu et al.30 for S = 35 and T = 298.15 K. of the non-zero intercept is in our experiments, but it may be related to light instabilities of the optical system or other random errors. Benchtop dual-beam spectrophotometers are inherently more stable, allowing for higher quality optical measurements. It is therefore possible that using such instruments eliminates the need for the multi-point determination approach used in this work. This, however, remains to be tested, and it is recom- mended that, when portable spectrophotometers are used (as in this work), a multi-point determination approach is used. of the non-zero intercept is in our experiments, but it may be related to light instabilities of the optical system or other random errors. Benchtop dual-beam spectrophotometers are inherently more stable, allowing for higher quality optical measurements. It is therefore possible that using such instruments eliminates the need for the multi-point determination approach used in this work. This, however, remains to be tested, and it is recom- mended that, when portable spectrophotometers are used (as in this work), a multi-point determination approach is used. Determination of −  k e log( ) T 2 2 as a function of temperature and salinity. The temperature and salinity dependence of − k e log( ) T 2 2 of purified mCP was determined by measurements of the absorbance ratio (R = A578/A434) in the Tris/HCl buffers prepared in a range of salinities (S = 35, 45, 50, 60, 70, 85, and 100) at tem- peratures ranging from their freezing point to 298.15 K. = −. + . × − e 0 004363 3 598 10 T, 1 5 Temperature (K) 270 275 280 285 290 295 Salinity 40 50 60 70 80 90 100 7.7 7.7 7.7 7.7 7.8 7.8 7.8 7.8 7.9 7.9 7.9 7.9 8.0 8.0 8.0 8.0 8.1 8.1 8.1 8.1 8.2 Salinity Figure 5. Temperature and salinity dependence of − k e log( ) T 2 2 (values on contour lines) as determined in this study from the absorbance ratio (R = A578/A434) measurements in electrochemically characterized Tris/HCl buffers in synthetic seawater and brines (S = 35, 45, 50, 60, 70, 85, and 100) between their freezing point and 298.15 K. Temperature (K) 265 270 275 280 285 290 295 Salinity 40 50 60 70 80 90 100 0.12 0.10 0.08 0.06 0.04 0.02 0.00 -0.02 -0.04 0.16 0.14 0.18 0.22 0.20 0.24 0.26 0.28 Figure 6. Differences in − k e log( ) T 2 2 calculated with the Liu et al. (2011) and current parameterizations (equation 8). The hatched rectangle represents a portion of the experimental range of Liu et al.31. Temperature (K) 265 270 275 280 285 290 295 Salinity 40 50 60 70 80 90 100 0.12 0.10 0.08 0.06 0.04 0.02 0.00 -0.02 -0.04 0.16 0.14 0.18 0.22 0.20 0.24 0.26 0.28 Figure 6. Differences in − k e log( ) T 2 2 calculated with the Liu et al. (2011) and current parameterizations (equation 8). The hatched rectangle represents a portion of the experimental range of Liu et al.31. Liu et al.31 determined the − k e log( ) T 2 2 of purified mCP for 278.15 ≤ T ≤ 308.15 and S = 20–40. Our − k e log( ) T 2 2 S-T parameterization (equation 9) and that in Liu et al.31 yield values within 0.001 at S = 35 and T = 298.15 ± 5 K and within 0.010 down to T = 283.15 K. Higher discrepancies between the two relationships at low temperatures (Fig. 6) may reflect differences between the instruments used for the − k e log( ) T 2 2 determination. The pH measur- ing system used for this work had no parts of the optical path exposed to air, thus eliminating the possibility of condensation at low temperatures. = −. + . × − e 0 004363 3 598 10 T, 1 5 The temperature and salinity dependence of − k e log( ) T 2 2 in these conditions can be described by: − = + + + k e a b c d log( ) T lnT T, (9) T 2 2 (9) The factors in the above equation were determined from our measurements using the regression routine in Excel, with a = −319.8369 + 0.688159 S−0.00018374 S2, b = 10508.724–32.9599 S + 0.059082 S2, c = 55.54253−0.101639 S, d = −0.08112151 (r2 = 0.9986, p < 0.00001, n = 47, standard error of fit: σfit = 0.007). Based on this equation, − k e log( ) T 2 2  = 8.0171 at 0 °C and S = 35, while − k e log( ) T 2 2  = 8.2475 at −6 °C and S = 100. The relatively strong temperature dependence of − k e log( ) T 2 2 (Fig. 5) highlights the importance of accurate tem- perature control (±0.05 °C) during pH measurements. Accurate knowledge of salinity is less important (±1 psu), especially within ranges associated with open ocean waters (30 < S < 40). Under these conditions, salinity varia- tions of the order of 1 psu have only a minor effect on − k e log( ) T 2 2 and pH (0.001–0.002 unit) within the uncer- tainty of the − k e log( ) T 2 2 value, based on the standard error of the best-fit S-T function above. At higher salinities (S > 50), more accurate salinity measurements (0.1 psu) are desirable to maintain the same magnitude of − k e log( ) T 2 2 and pH uncertainty (in the order of 0.001 pH unit at S = 90). Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 7 www.nature.com/scientificreports/ Temperature (K) 270 275 280 285 290 295 Salinity 40 50 60 70 80 90 100 7.7 7.7 7.7 7.7 7.8 7.8 7.8 7.8 7.9 7.9 7.9 7.9 8.0 8.0 8.0 8.0 8.1 8.1 8.1 8.1 8.2 Figure 5. Temperature and salinity dependence of − k e log( ) T 2 2 (values on contour lines) as determined in this study from the absorbance ratio (R = A578/A434) measurements in electrochemically characterized Tris/HCl buffers in synthetic seawater and brines (S = 35, 45, 50, 60, 70, 85, and 100) between their freezing point and 298.15 K. = −. + . × − e 0 004363 3 598 10 T, 1 5 The condensation is more difficult to control with bench-top spectrophotom- eters as that used by Liu et al.31, although dry N2 gas was used to eliminate condensation on the optical windows at 5 °C. From this comparison, it is clear that the relationship for − k e log( ) T 2 2 by Liu et al.31 should not be extrapo- lated for pH measurements outside its range (S = 20–40, T = 278.15–303.15 K) as this can lead to large errors in pH (0.02–0.30) (Fig. 6). The relationship (equation 8) proposed here should also not be used outside its calibra- tion range (S = 35–100, T = 267.15–298.15 K). 8 Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 www.nature.com/scientificreports/ ificreports/ T (K) 265 270 275 280 285 290 295 300 pHspec-pHHarned -0.015 -0.010 -0.005 0.000 0.005 0.010 0.015 0.020 S 35 S 45 S 50 S 60 S 70 S 85 S 100 Figure 7. Differences between spectrophotometrically (equations 4, 6, 7 and 8) and electrochemically (Harned) determined pHT in Tris/HCl buffer solutions in synthetic seawater and brines with conservative (seawater- derived) major ionic composition. Figure 7. Differences between spectrophotometrically (equations 4, 6, 7 and 8) and electrochemically (Harned) determined pHT in Tris/HCl buffer solutions in synthetic seawater and brines with conservative (seawater- derived) major ionic composition. Determination of pH using purified mCP at temperatures between 298.15 K and the freezing point of seawater and sea-ice brines up to salinity 100. Equations 5, 7, 8, and 9 can be used to deter- mine pH on the total proton scale by measurement of the absorption ratio R of purified mCP in seawater and seawater brines, with conservative major ionic composition, with S between 30 and 100 and T between freezing point and 298.15 K. The residuals (pHspec–pHHarned) of pH measurements in Tris/HCl buffers using purified mCP and application of eq. 4, 6, 7 and 8 indicate a relatively wide spread (Fig. 7) with an average absolute residual of 0.004 and maximum absolute residual of 0.016. = −. + . × − e 0 004363 3 598 10 T, 1 5 As the analytical precision (1 standard deviation of n = 5–10 repeat measurements of the same buffer) is significantly smaller (0.001–0.004), at least part of the observed mag- nitude of buffer residuals could be attributed to error propagation from the parameters involved in pH determi- nation (e.g., − k e log( ) T 2 2 , σfit = 0.007) and random error related to buffer preparation, bottling, and handling. Residuals are up to 3 times larger close to the freezing point than at 298.15 K possibly due to the physical/optical heterogeneity of water during the early stages of ice-crystal formation. Therefore, the proposed pH measurement protocol offers good precision (0.001–0.004) and an overall uncertainty in the order of the maximum residual values observed here (0.010–0.020 pH unit), especially at below-zero temperatures near the freezing point of concentrated brines. In comparison, extrapolation of the temperature and salinity dependence of the mCP char- acterization by Liu et al.31 to values outside their empirical range can lead to pH errors at S = 100 in the order of 0.3 pH unit. Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 References pH Evolution in Sea Ice Grown at an Outdoor Experimental Facility. Mar. Chem. doi:10.1016/j marchem.2013.04.007 (2013).h marchem.2013.04.007 (2013). 26. Papadimitriou, S., Kennedy, H., Kattner, G., Dieckmann, G. S. & Thomas, D. N. Experimental evidence for carbonate precipitation marchem.2013.04.007 (2013). 26. Papadimitriou, S., Kennedy, H., Kattner, G., Dieckmann, G. S. & Thomas, D. N. Experimental evidence for carbonate precipitation and CO2 degassing during sea ice formation Geochim Cosmochim Acta 68 1749–1761 doi:10 1016/j gca 2003 07 004 (2004) 6. Papadimitriou, S., Kennedy, H., Kattner, G., Dieckmann, G. S. & Thomas, D. N. Experimental evidence for carbonate precipitation and CO2 degassing during sea ice formation. Geochim. Cosmochim. Acta 68, 1749–1761, doi:10.1016/j.gca.2003.07.004 (2004).f and CO2 degassing during sea ice formation. Geochim. Cosmochim. Acta 68, 1749 1761, doi:10.1016/j.gca.2003.07.004 (2 7. Fofonoff, N. P. & Millard, R. C. Algorithms for computation of fundamental properties of seawater. (UNESCO, 1983). g g g j g 27. Fofonoff, N. P. & Millard, R. C. Algorithms for computation of fundamental properties of seawater. (UNESCO, 1 f g p p p ( ) 8. Dickson, A. G., Sabine, C. L. & Christian, J. R. Guide to Best Practices for Ocean CO2 Measurements. Vol. 3 (PICES Specia Publication, 2007). ) 29. Brown, K. A., Miller, L. A., Davelaar, M., Francois, R. & Tortell, P. D. Over-determination of the carbonate system in natural sea-ice brine and assessment of carbonic acid dissociation constants under low temperature, high salinity conditions. Mar. Chem. 165, 36–45, doi:10.1016/j.marchem.2014.07.005 (2014). j 0. Clayton, T. D. & Byrne, R. H. Spectrophotometric seawater pH measurements: total hydrogen ion concentration scale calibration o m-cresol purple and at-sea results. Deep Sea Res. I: Oceanogr. Res. Pap 40, 2115–2129 (1993).i p p p g p 1. Liu, X., Patsavas, M. C. & Byrne, R. H. Purification and Characterization of meta-Cresol Purple for Spectrophotometric Seawate pH Measurements. Environ. Sci. Technol. 45, 4862–4868, doi:10.1021/es200665d (2011).h g 31. Liu, X., Patsavas, M. C. & Byrne, R. H. Purification and Characterization of meta-Cresol Purp pH Measurements. Environ. Sci. Technol. 45, 4862–4868, doi:10.1021/es200665d (2011).h p 2. Papadimitriou, S. et al. The measurement of pH in saline and hypersaline media at sub-zero temperatures: Characterization of Tri buffers. Mar. Chem. 184, 11–20, doi:10.1016/j.marchem.2016.06.002 (2016). f j 3. Zhang, H. N. & Byrne, R. H. Spectrophotometric pH measurements of surface seawater at in-situ conditions: Absorbance and protonation behavior of thymol blue. Mar. Chem. 52, 17–25, doi:10.1016/0304-4203(95)00076-3 (1996).fi p y 4. References & Mathis, J. T. The Arctic Ocean marine carbon cycle: evaluation of air-sea CO2 exchanges, ocean acidification impacts and potential feedbacks. Biogeosciences 6, 2433–2459 (2009). p g 3. Miller, L. A. et al. Changes in the marine carbonate system of the western Arctic: patterns in a rescued data set. Polar Res. 33, 1–15 doi:10.3402/polar.v33.20577 (2014). 14. Cox, G. F. N. & Weeks, W. F. Equations for determining the gas and brine volumes in sea-ice samples. Journal of Glaciology 29, 306–316 (1983). 15. Papadimitriou, S. et al. Biogeochemical composition of natural sea ice brines from the Weddell Sea during early austral sum Limnol. Oceanogr. 52, 1809–1823, doi:10.4319/lo.2007.52.5.1809 (2007). g 6. Thomas, D. N. & Dieckmann, G. S. Antarctic Sea Ice–a Habitat for Extremophiles. Science 295, 641–644, doi:10.1126 science.1063391 (2002). 7. Arrigo, K. R., Worthen, D. L., Lizotte, M. P., Dixon, P. & Dieckmann, G. Primary Production in Antarctic Sea Ice. Science 276 394–397, doi:10.1126/science.276.5311.394 (1997). 18. Miller, L. A., Carnat, G., Else, B. G. T., Sutherland, N. & Papakyriakou, T. N. Carbonate system evolution at the Arctic Ocean surface during autumn freeze-up. Journal of Geophysical Research: Oceans 116, C00G04, doi:10.1029/2011JC007143 (2011).l 9. Miller, L. A. et al. Carbon dynamics in sea ice: A winter flux time series. Journal of Geophysical Research: Oceans 116, n/a-n/a doi:10.1029/2009JC006058 (2011).hf 20. Papadimitriou, S. et al. The effect of biological activity, CaCO3 mineral dynamics, and CO2 degassing in the inorganic carbon cycle in sea ice in late winter-early spring in the Weddell Sea, Antarctica. Journal of Geophysical Research: Oceans 117, n/a-n/a, doi:10.1029/2012JC008058 (2012). J ( ) 21. Rysgaard, S., Glud, R. N., Sejr, M. K., Bendtsen, J. & Christensen, P. B. Inorganic carbon transport during sea ice growth and decay: A carbon pump in polar seas. Journal of Geophysical Research: Oceans 112, n/a-n/a, doi:10.1029/2006jc003572 (2007). 2. Rysgaard, S. et al. Sea ice contribution to the air–sea CO2 exchange in the Arctic and Southern Oceans. Tellus B 63, 823–830 doi:10.1111/j.1600-0889.2011.00571.x (2011).h 3. Delille, B. et al. Southern Ocean CO2 sink: The contribution of the sea ice. Journal of Geophysical Research: Oceans 119, 6340–6355 doi:10.1002/2014JC009941 (2014).fh 4. Gleitz, M., v.d. Loeff, M. R., Thomas, D. N., Dieckmann, G. S. & Millero, F. J. Comparison of summer and winter inorganic carbon oxygen and nutrient concentrations in Antarctic sea ice brine. Mar. Chem. 51, 81–91, doi:10.1016/0304-4203(95)00053-T (1995). 5. Hare, A. A. et al. References 1. Feely, R. A. et al. Impact of Anthropogenic CO2 on the CaCO3 System in the Oceans. Science 305, 362–366, doi:10.1126 science.1097329 (2004).i 1. Feely, R. A. et al. Impact of Anthropogenic CO2 on the CaCO3 System in the Oceans. Science 305, 362–366, doi:10.1126/ science.1097329 (2004).i 2. Aze, T. et al. An Updated Synthesis of the Impacts of Ocean Acidification on Marine Biodiversity (CBD Technical Series; 75) (Secretariat of the Convention on Biological Diversity, 2014).ih g y 3. Doney, S. C., Fabry, V. J., Feely, R. A. & Kleypas, J. A. Ocean Acidification: The Other CO2 Problem. Annual Review of Marine Scienc 1, 169–192, doi:10.1146/annurev.marine.010908.163834 (2009).fi i 1, 169–192, doi:10.1146/annurev.marine.010908.163834 (2009). ( ) 4. Kroeker, K. J., Kordas, R. L., Crim, R. N. & Singh, G. G. Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms. Ecol. Lett. 13, 1419–1434, doi:10.1111/j.1461-0248.2010.01518.x (2010).l 5. Takahashi, T. et al. Global sea-air CO2 flux based on climatological surface ocean pCO2, and seasonal biological and temperature effects. Deep Sea Res. II: Top. Stud. Oceanogr 49, 1601–1622 (2002). f p p g ( ) 6. Revelle, R. & Suess, H. E. Carbon Dioxide Exchange Between Atmosphere and Ocean and the Question of an Increase o Atmospheric CO2 during the Past Decades. Tellus 9, 18–27, doi:10.1111/j.2153-3490.1957.tb01849.x (1957). p g j 7. Chierici, M. et al. Impact of biogeochemical processes and environmental factors on the calcium carbonate saturation state in the 7. Chierici, M. et al. Impact of biogeochemical processes and environmental factors on the calcium carbonate saturation state in the Circumpolar Flaw Lead in the Amundsen Gulf, Arctic Ocean. J. Geophys. Res. 116, C00G09, doi:10.1029/2011jc007184 (2011). p g p Circumpolar Flaw Lead in the Amundsen Gulf, Arctic Ocean. J. Geophys. Res. 116, C00G09, doi:10.1029/2011jc007184 (2011). 8. Yamamoto, A., Kawamiya, M., Ishida, A., Yamanaka, Y. & Watanabe, S. Impact of rapid sea-ice reduction in the Arctic Ocean rate of ocean acidification. Biogeosciences 9, 2365–2375, doi:10.5194/bg-9-2365-2012 (2012).h i g g 9. Sabine, C. L. et al. The Oceanic Sink for Anthropogenic CO2. Science 305, 367–371, doi:10.1126/science.1097403 (2004).hi 10. Caldeira, K. & Wickett, M. E. Anthropogenic carbon and ocean pH: The coming centuries may see more ocean acidification the past 300 million years. Nature 425, 365 (2003).ii 11. Orr, J. C. et al. Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 437, 681–686 (2005).hi ( ) 12. Bates, N. R. Summary and Conclusioni y We have purified mCP and characterized it spectrophotometrically in synthetic solutions with conservative sea- water major ionic composition and salinity between 35 and 100 at temperatures ranging from the freezing point of such solutions to 298.15 K. This was made possible by the use of suitable and well characterised Tris/HCl buff- ers and a novel custom-made optical cell that was fully submerged in a water bath eliminating the possibility of condensation build-up in the optical path. This setup allowed for accurate optical measurements at temperatures down to 267.15 K. Both the experimental set-up and the S-T functions of this work will allow traceable, precise, and reliable spectrophotometric pH measurements in internal sea ice brines and other high latitude and deep waters where temperatures are often just above freezing. The current characterization of purified mCP offers major improvement of pH measurement (0.010–0.020 pH unit uncertainty) in high salinities (up to S = 100) and near-zero and below-zero temperatures to the freezing point over that obtained from the extrapolation of the previous characterization30 (0.3 pH unit uncertainty) to these S-T conditions. The important tools developed in this work provide a step forward towards the understanding of the carbonate system in the cryosphere and cold waters in general. In combination with attainable measurements of the remainder three measurable parameters of the carbonate system (DIC, TA, pCO2), the reliable pH measurements made possible in the extended salinity and temperature ranges of this investigation will facilitate the determination of several unknowns in the parame- terization of the carbonate system in these S –T conditions, including the acidity constants of carbonic acid and, following this, important geochemical indicators, such the saturation state of seawater and brines with respect to carbonate minerals in high latitude marine systems. Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 9 www.nature.com/scientificreports/ Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 References Pratt, K. W. Measurement of pHT values of Tris buffers in artificial seawater at varying mole ratios of Tris:Tris·HCl. Mar. Chem. 162 89–95, doi:10.1016/j.marchem.2014.03.003 (2014).l j 35. Ogilvie, I. R. G. et al. Reduction of surface roughness for optical quality microfluidic devices in PMMA and COC. Journal of Micromechanics and Microengineering 20, 065016 (2010).l g g 36. Floquet, C. F. A. et al. Nanomolar detection with high sensitivity microfluidic absorption cells manufactured in tinted PMMA for chemical analysis. Talanta 84, 235–239, doi:10.1016/j.talanta.2010.12.026 (2011).l y j 7. Rérolle, V. M. C. et al. Development of a colorimetric microfluidic pH sensor for autonomous seawater measurements. Anal. Chim Acta 786, 124–131, doi:10.1016/j.aca.2013.05.008 (2013). p Acta 786, 124–131, doi:10.1016/j.aca.2013.05.008 (2013). j 38. Assur, A. Composition of sea ice and its tensile strength in Arctic sea ice. 106–138 (National Academy of Sciences, 1958). 38. Assur, A. Composition of sea ice and its tensile strength in Arct p g ( y ) 39. Yao, W. S., Liu, X. W. & Byrne, R. H. Impurities in indicators used for spectrophotometric seawater pH measurements: Asse and remedies. Mar. Chem. 107, 167–172, doi:10.1016/j.marchem.2007.06.012 (2007).il j ( ) 40. Patsavas, M. C., Byrne, R. H. & Liu, X. W. Purification of meta-cresol purple and cresol red by flash chromatography: Procedures for ensuring accurate spectrophotometric seawater pH measurements. Mar. Chem. 150, 19–24, doi:10.1016/j.marchem.2013.01.004 (2013). Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 10 www.nature.com/scientificreports/ Author Contributions S.L. conducted the experiments, analysed the data, made the figures and wrote the manuscript. V.R. developed and built the spectrophotometric pH apparatus and measured the pH of the buffers. S.P. prepared and characterised the buffers and contributed to the analysis of the data. H.K. as the project’s principal investigator managed the project. M.M. oversaw and contributed to the development of the relevant technology. A.D. lead the production and characterisation of the buffers. M.G. set up and optimised the indicator purification procedure. E.A. contributed to the data analysis and interpretation. All authors reviewed the manuscript. Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 Additional Informationh Competing Interests: The authors declare that they have no competing interests. Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Cre- ative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not per- mitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. © The Author(s) 2017 Scientific Reports | 7: 2481 | DOI:10.1038/s41598-017-02624-0 11
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A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data
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A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data Ali Seyed Shirkhorshidi1*, Saeed Aghabozorgi2, Teh Ying Wah1 1 Department of Information Systems, Faculty of Computer Science and Information Technology, University of Malaya, 50603, Kuala Lumpur, Malaysia, 2 IBM Analytics, Platform, Emerging Technologies, IBM Canada Ltd., Markham, Ontario L6F 1C7, Canada * shirkhorshidi_ali@yahoo.co.uk * shirkhorshidi_ali@yahoo.co.uk RESEARCH ARTICLE OPEN ACCESS OPEN ACCESS Citation: Shirkhorshidi AS, Aghabozorgi S, Wah TY (2015) A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data. PLoS ONE 10(12): e0144059. doi:10.1371/ journal.pone.0144059 Editor: Andrew R. Dalby, University of Westminster, UNITED KINGDOM Received: May 10, 2015 Accepted: November 12, 2015 Published: December 11, 2015 Copyright: © 2015 Shirkhorshidi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Citation: Shirkhorshidi AS, Aghabozorgi S, Wah TY (2015) A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data. PLoS ONE 10(12): e0144059. doi:10.1371/ journal.pone.0144059 Citation: Shirkhorshidi AS, Aghabozorgi S, Wah TY (2015) A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data. PLoS ONE 10(12): e0144059. doi:10.1371/ journal.pone.0144059 journal.pone.0144059 Editor: Andrew R. Dalby, University of Westminster, UNITED KINGDOM Received: May 10, 2015 Accepted: November 12, 2015 Published: December 11, 2015 Copyright: © 2015 Shirkhorshidi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Editor: Andrew R. Dalby, University of Westminster, UNITED KINGDOM Editor: Andrew R. Dalby, University of Westminster, UNITED KINGDOM Received: May 10, 2015 Accepted: November 12, 2015 Published: December 11, 2015 Copyright: © 2015 Shirkhorshidi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Copyright: © 2015 Shirkhorshidi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Similarity or distance measures are core components used by distance-based clustering algorithms to cluster similar data points into the same clusters, while dissimilar or distant data points are placed into different clusters. The performance of similarity measures is mostly addressed in two or three-dimensional spaces, beyond which, to the best of our knowledge, there is no empirical study that has revealed the behavior of similarity measures when dealing with high-dimensional datasets. To fill this gap, a technical framework is pro- posed in this study to analyze, compare and benchmark the influence of different similarity measures on the results of distance-based clustering algorithms. For reproducibility pur- poses, fifteen publicly available datasets were used for this study, and consequently, future distance measures can be evaluated and compared with the results of the measures dis- cussed in this work. These datasets were classified as low and high-dimensional categories to study the performance of each measure against each category. This research should help the research community to identify suitable distance measures for datasets and also to facilitate a comparison and evaluation of the newly proposed similarity or distance mea- sures with traditional ones. Comparison on Similarity Measures in Clustering Continuous Data image analysis [5–7], clustering gene expression data [8–10], investigating and analyzing air pollution data [11–13], power consumption analysis [14–16], and many more fields of study. Improving clustering performance has always been a target for researchers. Since in distance- based clustering similarity or dissimilarity (distance) measures are the core algorithm compo- nents, their efficiency directly influences the performance of clustering algorithms. These algorithms use similarity or distance measures to cluster similar data points into the same clus- ters, while dissimilar or distant data points are placed into different clusters. Examples of dis- tance-based clustering algorithms include partitioning clustering algorithms, such as k-means as well as k-medoids and hierarchical clustering [17]. analysis, decision to publish, or preparation of the manuscript. The specific roles of these authors are articulated in the ‘author contributions’ section. analysis, decision to publish, or preparation of the manuscript. The specific roles of these authors are articulated in the ‘author contributions’ section. Competing Interests: The authors have the following interests: Saeed Aghabozorgi is employed by IBM Canada Ltd. There are no patents, products in development or marketed products to declare. This does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials, as detailed online in the guide for authors. Although there are various studies available for comparing similarity/distance measures for clustering numerical data, but there are two difference between this study and other existing studies and related works: first, the aim in this study is to investigate the similarity/distance measures against low dimensional and high dimensional datasets and we wanted to analyse their behaviour in this context. Second thing that distinguish our study from others is that our datasets are coming from a variety of applications and domains while other works confined with a specific domain. In essence, the target of this research is to compare and benchmark similarity and distance measures for clustering continuous data to examine their performance while they are applied to low and high-dimensional datasets. For the sake of reproducibility, fif- teen publicly available datasets [18,19] were used for this study, so future distance measures could consequently be evaluated and compared with the results of traditional measures dis- cussed in this study. These datasets are classified into low and high-dimensional, and each measure is studied against each category. But before doing the study on similarity or dissimilar- ity measures, it needs to be clarified that they have significant influence on clustering quality and are worthwhile to be studied. In sections 3 (methodology) it is elaborated that the similar- ity or distance measures have significant influence on clustering results. The key contributions of this paper are as follows: The key contributions of this paper are as follows: • Twelve similarity measures frequently used for clustering continuous data from various fields are compiled in this study to be evaluated in a single framework. Most of these similarity measures have not been examined in domains other than the originally proposed one. • A technical framework is proposed in this study to analyze, compare and benchmark the influ- ence of different similarity measures on the result of distance-based clustering algorithms. • Similarity measures are evaluated on a wide variety of publicly available datasets. Particularly, we evaluate and compare the performance of similarity measures for continuous data against datasets with low and high dimension. • Similarity measures are evaluated on a wide variety of publicly available datasets. Particularly, we evaluate and compare the performance of similarity measures for continuous data against datasets with low and high dimension. The rest of paper is organized as follows: in section 2, a background on distance measures is dis- cussed. In section 3, we have explained the methodology of the study. Experimental results with a discussion are represented in section 4, and section 5 summarizes the contributions of this study. Introduction Data Availability Statement: All third-party datasets used in this study are available publicly in UCI machine learning repository: http://archive.ics.uci.edu/ ml and Speech and Image Processing Unit, University of Eastern Finland: http://cs.joensuu.fi/sipu/ datasets/ References are mentioned in the manuscript in "experimental result" and "acknowledgment" sections. One of the biggest challenges of this decade is with databases having a variety of data types. Vari- ety is among the key notion in the emerging concept of big data, which is known by the 4 Vs: Volume, Velocity, Variety and Variability [1,2]. Currently, there are a variety of data types avail- able in databases, including: interval-scaled variables (salary, height), binary variables (gender), categorical variables (religion: Jewish, Muslim, Christian, etc.) and mixed type variables (multiple attributes with various types). Despite data type, the distance measure is a main component of distance-based clustering algorithms. Partitioning algorithms, such as k-means, k-medoids and more recently soft clustering approaches for instance fuzzy c-means [3] and rough clustering [4], are mainly dependent on distance measures to recognize clusters in a dataset. Funding: This work is supported by University of Malaya Research Grant no vote RP028C-14AET. IBM Canada Ltd funder provided support in the form of salaries for author [SA], but did not have any additional role in the study design, data collection and In data mining, ample techniques use distance measures to some extent. Clustering is a well-known technique for knowledge discovery in various scientific areas, such as medical 1 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Competing Interests: The authors have the following interests: Saeed Aghabozorgi is employed by IBM Canada Ltd. There are no patents, products in development or marketed products to declare. This does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials, as detailed online in the guide for authors. Definition 1 Given a dataset D = {v1, v2, . . ., vn} of data vectors and an integer value k, the clustering problem is to define a mapping f: D ! {1, . . ., k} where each vi is assigned to one cluster Cj, 1  j  k. A cluster Cj contains precisely those data vectors mapped to it; that is, Cj = {vi | f(ti) = Cj, 1  i  n, and vi 2 D}. In the rest of this study, v1, v2 represent two data vectors defined as v1 = {x1, x2, . . ., xn}, v2 = {y1, y2, . . ., yn}, where xi, yi are called attributes. Subsequently, similarity measures for clustering continuous data are discussed. Some of these similarity measures are frequently employed for clustering purposes while others have scarcely appeared in literature. Comparison on Similarity Measures in Clustering Continuous Data data and evaluated similarity measures in the context of outlier detection for categorical data [20]. It was concluded that the performance of an outlier detection algorithm is significantly affected by the similarity measure. In their research, it was not possible to introduce a best per- forming similarity measure, but they analyzed and reported the situations in which a measure has poor or superior performance. In another research work, Fernando et al. [21] reviewed, compared and benchmarked binary-based similarity measures for categorical data. With some cases studies, Deshpande et al. focused on data from a single knowledge area, for example bio- logical data, and conducted a comparison in favor of profile similarity measures for genetic interaction networks. They concluded that the Dot Product is consistent among the best mea- sures in different conditions and genetic interaction datasets [22]. Similarly, in the context of clustering, studies have been done on the effects of similarity mea- sures., In one study Strehl and colleagues tried to recognize the impact of similarity measures on web clustering [23]. In another, six similarity measure were assessed, this time for trajectory clus- tering in outdoor surveillance scenes [24]. In chemical databases, Al Khalifa et. al. [25] examined performance of twelve coefficients for clustering, similarity searching and compound selection. From the results they concluded that no single coefficient is appropriate for all methodologies. Despite these studies, no empirical analysis and comparison is available for clustering con- tinuous data to investigate their behavior in low and high dimensional datasets. At the other hand our datasets are coming from a variety of applications and domains and while they are limited with a specific domain. In this study, we gather known similarity/distance measures available for clustering continuous data, which will be examined using various clustering algo- rithms and against 15 publicly available datasets. It is not possible to introduce a perfect simi- larity measure for all kinds of datasets, but in this paper we will discover the reaction of similarity measures to low and high-dimensional datasets. The similarity measures with the best results in each category are also introduced. Before presenting the similarity measures for clustering continuous data, a definition of a clustering problem should be given. Assuming that the number of clusters required to be cre- ated is an input value k, the clustering problem is defined as follows [26]: Background on Distance Measures for Continuous Data Utilization of similarity measures is not limited to clustering, but in fact plenty of data mining algorithms use similarity measures to some extent. To reveal the influence of various distance measures on data mining, researchers have done experimental studies in various fields and have compared and evaluated the results generated by different distance measures. Although it is not practical to introduce a “Best” similarity measure or a best performing measure in gen- eral, a comparison study could shed a light on the performance and behavior of measures. For instance, Boriah et al. conducted a comparison study on similarity measures for categorical 2 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Euclidean distance The most well-known distance used for numerical data is probably the Euclidean distance. This is a special case of the Minkowski distance when m = 2. Euclidean distance performs well when deployed to datasets that include compact or isolated clusters [30,31]. Although Euclid- ean distance is very common in clustering, it has a drawback: if two data vectors have no attri- bute values in common, they may have a smaller distance than the other pair of data vectors containing the same attribute values [31,35,36]. Another problem with Euclidean distance as a family of the Minkowski metric is that the largest-scaled feature would dominate the others. Normalization of continuous features is a solution to this problem [31]. Average distance Regarding the above-mentioned drawback of Euclidean distance, average distance is a modified version of the Euclidean distance to improve the results [27,35]. For two data points x, y in n- dimentional space, the average distance is defined as dave ¼ 1 n Pn i¼1ðxi  yiÞ 2  1 2. Manhattan distance Manhattan distance is a special case of the Minkowski distance at m = 1. Like its parent, Man- hattan is sensitive to outliers. When this distance measure is used in clustering algorithms, the shape of clusters is hyper-rectangular [33]. A study by Perlibakas demonstrated that a modified version of this distance measure is among the best distance measures for PCA-based face rec- ognition [34]. This measure is defined as dman ¼ Pn i¼1jxi  yij. Weighted euclidean distance If the relative importance according to each attribute is available, then the Weighted Euclidean distance—another modification of Euclidean distance—can be used [37]. This distance is defined as dwe ¼ ðPn i¼1wiðxi  yiÞ 2Þ 1 2, where wi is the weight given to the ith component. This distance measure is the only measure which is not included in this study for compari- son since calculating the weights is closely related to the dataset and the aim of researcher for cluster analysis on the dataset. As an instance of using this measure reader can refer to Ji et. al. research work. They used this measure for proposing a dynamic fuzzy cluster algorithm for time series [38]. Comparison on Similarity Measures in Clustering Continuous Data largest-scale feature dominates the rest. Thus, normalizing the continuous features is the solu- tion to this problem [31]. A modified version of the Minkowski metric has been proposed to solve clustering obstacles. For example, Wilson and Martinez presented distance based on counts for nominal attributes and a modified Minkowski metric for continuous features [32]. Minkowski The Minkowski family includes Euclidean distance and Manhattan distance, which are particular cases of the Minkowski distance [27–29]. The Minkowski distance is defined by dmin ¼ ðPn i¼1jxi  yij mÞ 1 m; m  1; where m is a positive real number and xi and yi are two vec- tors in n-dimensional space. The Minkowski distance performs well when the dataset clusters are isolated or compacted; if the dataset does not fulfil this condition, then the large-scale attri- butes would dominate the others [30,31]. Another problem with Minkowski metrics is that the 3 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Cosine deasure The Cosine similarity measure is mostly used in document similarity [28,33] and is defined as Cosine x; y ð Þ ¼ Pn i¼1xiyi kxk2kyk2 , where kyk2 is the Euclidean norm of vector y = (y1, y2, . . ., yn) defined as kyk2 ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi y2 1 þ y2 2 þ . . . þ y2 n p . The Cosine measure is invariant to rotation but is variant to linear transformations. It is also independent of vector length [33]. Chord distance Chord distance is one more Euclidean distance modification to overcome the previously men- tioned Euclidean distance shortcomings. It can solve problems caused by the scale of measure- ments as well. Chord distance is defined as the length of the chord joining two normalized points within a hypersphere of radius one. This distance can be calculated from non-normal- ized data as well [27]. Chord distance is defined as dchord ¼ 2  2 Pn i¼1xiyi kxk2kyk2   2 , where kxk2 is the L2-norm kxk2 ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1x2 i p . L2-norm kxk2 ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1x2 i p . 4 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Mahalanobis distance Mahalanobis distance is a data-driven measure in contrast to Euclidean and Manhattan dis- tances that are independent of the related dataset to which two data points belong [20,33]. A regularized Mahalanobis distance can be used for extracting hyperellipsoidal clusters [30]. On the other hand, Mahalanobis distance can alleviated distortion caused by linear correlation among features by applying a whitening transformation to the data or by using the squared Mahalanobis distance [31]. Mahalanobis distance is defined by dmah ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi ðx  yÞS1ðx  yÞ T q where S is the covariance matrix of the dataset [27,39]. PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Pearson correlation Pearson correlation is widely used in clustering gene expression data [33,36,40]. This similarity measure calculates the similarity between the shapes of two gene expression patterns. The Pear- son correlation is defined by Pearsonðx; yÞ ¼ Pn i¼1ðximxÞðyimyÞ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1ðxiyiÞ2 p ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1ðxiyiÞ2 p , where μx and μy are the means for x and y respectively. The Pearson correlation has a disadvantage of being sensi- tive to outliers [33,40]. the means for x and y respectively. The Pearson correlation has a disadvantage of being sensi- tive to outliers [33,40]. The similarity measures explained above are the most commonly used for clustering contin- uous data. Table 1 represents a summary of these with some highlights of each. 3.1 Experimental design This section is devoted to explain the method and the framework which is used in this study for evaluating the effect of similarity measures on clustering quality. The main objective of this research study is to analyse the effect of different distance measures on quality of clustering algorithm results. As it is illustrated in Fig 1 there are 15 datasets used with 4 distance based algorithms on a total of 12 distance measures. All the distance measures in Table 1 are exam- ined except the Weighted Euclidean distance which is dependent on the dataset and the aim of clustering. Fig 2 explains the methodology of the study briefly. For each dataset we examined all four distance based algorithms, and each algorithms’ quality of clustering has been evaluated by each 12 distance measures as it is demonstrated in Fig 1. It makes a total of 720 experiments in this research work to analyse the effect of distance measures. Representing and comparing this huge number of experiments is a challenging task and could not be done using ordinary charts and tables. Consequently we have developed a special illustration method using heat mapped tables in order to demonstrate all the results in the way that could be read and understand quickly. This method is described in section 4.1.1. 5 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Comparison on Similarity Measures in Clustering Continuous Data Table 1. Similarity Measures for continuous data (in time complexity, n is the number of dimensions of x and y). Distance Measure Equation Time complexity Advantages Disadvantages Applications Euclidean Distance deuc ¼ X n i¼1 ðxi  yiÞ 2 " #1 2 O(n) Very common, easy to compute and works well with datasets with compact or isolated clusters [27,31]. Sensitive to outliers [27,31]. K-means algorithm, Fuzzy c-means algorithm [38]. Average Distance dave ¼ 1n X n i¼1 ðxi  yiÞ 2 !1 2 O(n) Better than Euclidean distance [35] at handling outliers. Variables contribute independently to the measure of distance. Redundant values could dominate the similarity between data points [37]. K-means algorithm Weighted Euclidean dwe ¼ X n i¼1 wiðxi  yiÞ 2 !1 2 O(n) The weight matrix allows to increase the effect of more important data points than less important one [37]. Same as Average Distance. Comparison on Similarity Measures in Clustering Continuous Data Table 1. (Continued) Table 1. (Continued) Table 1. (Continued) Distance Measure Equation Time complexity Advantages Disadvantages Applications Pearson coefficient Pearsonðx; yÞ ¼ Pn i¼1ðximxÞðyimyÞ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1ðxiyiÞ2 p ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Pn i¼1ðxiyiÞ2 p O(2n) *Results in accurate outcomes using the hierarchical single-link algorithm for high dimensional datasets. - Partitioning and hierarchical clustering algorithms. *Points marked by asterisk are compiled based on this article’s experimental results. *Points marked by asterisk are compiled based on this article’s experimental results. *Points marked by asterisk are compiled based on this article’s experimental results. 3.2 Rand Index In this study, we used Rand Index (RI) for evaluation of clustering outcomes resulted by vari- ous distance measures. This section is an overview on this measure and it investigates the rea- son that this measure has been chosen. Rand index is frequently used in measuring clustering quality. It is a measure of agreement between two sets of objects: first is the set produced by clustering process and the other defined by external criteria. Although there are different clustering measures such as Sum of Squared Error, Entropy, Purity, Jaccard etc. but among them the Rand index is probably the most used index for cluster validation [17,41,42]. Assuming S = {o1, o2, . . ., on} is a set of n elements and two partitions of S are given to compare C = {c1, c2, . . ., cr}, which is a partition of S into r sub- sets and G = {g1, g2, . . ., gs}, a partition of S into s subsets, the Rand index (R) is defined as follows: Definition 2 RI ¼ a þ b a þ b þ c þ d 1 where: Definition 2 RI ¼ a þ b a þ b þ c þ d 1 where: 3.1 Experimental design Fuzzy c-means algorithm [38] Chord dchord ¼ 2  2 Pn i¼1xiyi kxk2kyk2  1 2 O(3n) Can work with un- normalized data [27]. It is not invariant to linear transformation [33]. Ecological resemblance detection [35]. Mahalanobis dmah ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi ðx  yÞS1ðx  yÞ T q O(3n) Mahalanobis is a data- driven measure that can ease the distance distortion caused by a linear combination of attributes [35]. It can be expensive in terms of computation [33] Hyperellipsoidal clustering algorithm [30]. Cosine Measure Cosine x; y ð Þ ¼ Pn i¼1xiyi kxk2kyk2 O(3n) Independent of vector length and invariant to rotation [33]. It is not invariant to linear transformation [33]. Mostly used in document similarity applications [28,33]. Manhattan dman ¼ X n i¼1 ðxi  yiÞ O(n) Is common and like other Minkowski-driven distances it works well with datasets with compact or isolated clusters [27]. Sensitive to the outliers. [27,31] K-means algorithm Mean Character Difference dMCD ¼ 1n X n i¼1 jxi  yij O(n) *Results in accurate outcomes using the K- medoids algorithm. *Low accuracy for high- dimensional datasets using K-means. Partitioning and hierarchical clustering algorithms. Index of Association dIOA ¼ 1n X n i¼1 xi Pn i¼1xi  yi Pn i¼1yi   O(3n) - *Low accuracy using K- means and K-medoids algorithms. Partitioning and hierarchical clustering algorithms. Canberra Metric dcanb ¼ X n i¼1 jxiyij ðxiþyiÞ O(n) *Results in accurate outcomes for high- dimensional datasets using the K-medoids algorithm. - Partitioning and hierarchical clustering algorithms. Czekanowski Coefficient dczekan ¼ 1  2Pn i¼1minðxi;yiÞ Pn i¼1ðxiþyiÞ O(2n) *Results in accurate outcomes for medium- dimensional datasets using the K-means algorithm. - Partitioning and hierarchical clustering algorithms. Coefficient of Divergence dcanb ¼ 1n X n i¼1 xiyi xiþyi  2 !1 2 O(n) *Results in accurate outcomes using the K- means algorithm. - Partitioning and hierarchical clustering algorithms. (Continued) arity Measures for continuous data (in time complexity, n is the number of dimensions of x and y). deuc ¼ X n i¼1 ðxi  yiÞ 2 " #1 2 deuc ¼ X n i¼1 ðxi  yiÞ 2 " #1 2 Weighted Euclidean Manhattan dczekan ¼ 1  2Pn i¼1minðxi;yiÞ Pn i¼1ðxiþyiÞ Czekanowski Coefficient of Divergence Coefficient of PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 6 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Fig 1. Overview of experimental study. Definition 2 RI ¼ a þ b a þ b þ c þ d 1 RI ¼ a þ b a þ b þ c þ d 1 where: • a is the number of pairs of vectors in S that are in the same set in C and in the same set in G. • a is the number of pairs of vectors in S that are in the same set in C and in the same set in G • b is the number of pairs of elements in S that are in different sets in C and in different sets in G. • c is the number of pairs of elements in S that are in the same set in C and in different sets in G. • d is the number of pairs of elements in S that are in different sets in C and in the same set in G. There is a modified version of rand index called Adjusted Rand Index (ARI) which is pro- posed by Hubert and Arabie [42] as an improvement for known problems with RI. These prob- lems happen when the expected value of the RI of two random partition does not take a constant value (zero for example) or the Rand statistic approaches its upper limit of unity as the number of cluster increases. However, since our datasets don’t have these problems and also owing to the fact that the results generated using ARI were following the same pattern of RI results, we have used Rand Index in this study due to its popularity in clustering community for clustering validation. 7 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Fig 1. Overview of experimental study. doi:10.1371/journal.pone.0144059.g001 Fig 2. Arrangement of experiments. doi:10.1371/journal.pone.0144059.g002 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 8 / 20 Fig 1. Overview of experimental study. doi:10.1371/journal.pone.0144059.g001 doi:10.1371/journal.pone.0144059.g002 3.3 Analysis of variance (ANOVA) test Before continuing this study, the main hypothesis needs to be proved: “distance measure has a considerable influence on clustering results”. In order to show that distance measures cause sig- nificant difference on clustering quality, we have used ANOVA test. For this purpose we will consider a null hypothesis: “distance measures doesn’t have significant influence on clustering quality”. Using ANOVA test, if the p value be very small, it means that there is very small opportunity that null hypothesis is correct, and consequently we can reject it. ANOVA analyzes the differences among a group of variable which is developed by Ronald Fisher [43]. ANOVA is a statistical test that demonstrate whether the mean of several groups are equal or not and it can be said that it generalizes the t-test for more than two groups. It is useful for testing means of more than two groups or variable for statistical significance. Statisti- cal significance in statistics is achieved when a p-value is less than the significance level [44]. The p-value is the probability of obtaining results which acknowledge that the null hypothesis is true [45]. For ANOVA test we have considered a table with the structure shown in Table 2 which cov- ers all RI results for all four algorithms and each distance/similarity measure and for all data- sets. Table is divided into 4 section for four respective algorithms. In each sections rows represent results generated with distance measures for a dataset. ANOVA test is performed for each algorithm separately to find if distance measures have significant impact on clustering results in each clustering algorithm. The ANOVA test result on above table is demonstrated in the Tables 3–6. The small Prob values indicates that differences between means of the columns are signifi- cant. From that we can conclude that the similarity measures have significant impact in cluster- ing quality. In the rest of this study we will inspect how these similarity measures influence on clustering quality. p y 0.1371/journal.pone.0144059.g001 Fig 2. Arrangement of experiments. doi:10.1371/journal.pone.0144059.g002 doi:10.1371/journal.pone.0144059.g001 8 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data In this study we normalized the Rand Index values for the experiments. The normalized val- ues are between 0 and 1 and we used following formula to approach it: In this study we normalized the Rand Index values for the experiments. The normalized val- ues are between 0 and 1 and we used following formula to approach it: zi ¼ ri  minðrÞ maxðrÞ  minðrÞ 2 zi ¼ ri  minðrÞ maxðrÞ  minðrÞ 2 2 where r = (r1, . . ., rn) is the array of rand indexes produced by each similarity measure. where r = (r1, . . ., rn) is the array of rand indexes produced by each similarity measure. PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Table 2. Rand Index values used for ANOVA test (in the table HAverage stands for Hierarchical Average algorithm and HSingle stands for Hierarchical Single link). Experimental Results It is noted that references to all data employed in this work are available in acknowledgment section. A diverse set of similarity measures for continuous data was studied on low and high- dimensional continuous datasets in order to clarify and compare the accuracy of each similarity measure in different datasets with various dimensionality situations and using 15 datasets [18,19,46–49]. Details of the datasets applied in this study are represented in Table 7. The experiments were conducted using partitioning (k-means and k-medoids) and hierar- chical algorithms, which are distance-based. As it is discussed in section 3.2 the Rand index served to evaluate and compare the results. The results for each of these algorithms are dis- cussed later in this section. The k-means and k-medoids algorithms were used in this experiment as partitioning algo- rithms, and the Rand index served accuracy evaluation purposes. Due to the fact that the k- means and k-medoids algorithm results are dependent on the initial, randomly selected cen- ters, and in some cases their accuracy might be affected by local minimum trap, the experiment 9 / 20 Dataset Distance/Similarity Measures Euclidean Average Cosine Chord Mahalanobis Canberra CoeffDiv Czekan IndOfAssoc Manhattan MCharDiff Pearson k-Means sensor_2 0.722 0.733 0.659 0.659 0.725 0.744 0.741 0.765 0.662 0.729 0.729 0.403 Aggregation 0.929 0.929 0.798 0.799 0.927 0.921 0.904 0.949 0.799 0.927 0.927 0.636 Compound 0.919 0.914 0.746 0.746 0.926 0.890 0.908 0.886 0.744 0.906 0.904 0.497 Flame 0.756 0.756 0.569 0.569 0.750 0.716 0.498 0.710 0.557 0.750 0.750 0.536 Pathbased 0.750 0.750 0.639 0.639 0.758 0.735 0.733 0.746 0.637 0.748 0.748 0.635 R15 0.999 0.999 0.949 0.948 0.999 0.999 0.998 0.998 0.947 0.998 0.998 0.552 Spiral 0.554 0.554 0.562 0.562 0.555 0.550 0.552 0.553 0.562 0.556 0.556 0.496 D31 0.994 0.992 0.956 0.956 0.995 0.992 0.992 0.994 0.956 0.994 0.994 0.528 Iris 0.880 0.880 0.966 0.966 0.880 0.942 0.950 0.927 0.958 0.874 0.874 0.776 sensor_4 0.612 0.624 0.637 0.637 0.619 0.745 0.709 0.737 0.649 0.726 0.728 0.670 Data_User_Modeling 0.725 0.725 0.668 0.668 0.719 0.711 0.706 0.713 0.668 0.712 0.711 0.657 Seeds 0.876 0.874 0.884 0.884 0.876 0.859 0.782 0.891 0.890 0.872 0.872 0.359 Glass 0.741 0.742 0.737 0.740 0.732 0.604 0.602 0.734 0.732 0.734 0.731 0.342 sensor_24 0.610 0.615 0.614 0.617 0.596 0.618 0.621 0.613 0.610 0.604 0.611 0.626 Libras movement 0.914 0.917 0.913 0.917 0.915 0.911 0.914 0.910 0.913 0.914 0.912 0.918 k-Medoids sensor_2 0.777 0.736 0.661 0.661 0.729 0.804 0.806 0.797 0.675 0.785 0.796 0.403 Aggregation 0.949 0.949 0.790 0.790 0.950 0.928 0.901 0.958 0.787 0.941 0.953 0.636 Compound 0.925 0.911 0.734 0.733 0.920 0.890 0.890 0.900 0.740 0.916 0.913 0.497 Flame 0.762 0.762 0.538 0.538 0.756 0.705 0.498 0.716 0.565 0.744 0.744 0.536 Pathbased 0.746 0.746 0.606 0.606 0.756 0.743 0.745 0.745 0.667 0.741 0.741 0.635 R15 0.999 0.999 0.947 0.945 0.988 0.998 0.988 0.998 0.947 0.999 0.998 0.552 Spiral 0.555 0.554 0.555 0.555 0.555 0.571 0.555 0.557 0.551 0.556 0.564 0.496 D31 0.994 0.992 0.956 0.956 0.992 0.990 0.988 0.991 0.956 0.991 0.994 0.528 Iris 0.912 0.912 0.966 0.966 0.824 0.927 0.950 0.906 0.950 0.880 0.880 0.776 sensor_4 0.707 0.711 0.711 0.711 0.656 0.740 0.722 0.709 0.690 0.696 0.716 0.656 Data_User_Modeling 0.725 0.712 0.654 0.654 0.728 0.285 0.285 0.285 0.646 0.734 0.745 0.659 Seeds 0.874 0.874 0.842 0.842 0.798 0.872 0.771 0.876 0.865 0.867 0.867 0.359 Glass 0.735 0.736 0.738 0.732 0.711 0.633 0.582 0.737 0.735 0.737 0.739 0.342 sensor_24 0.624 0.623 0.623 0.622 0.588 0.652 0.634 0.630 0.629 0.620 0.617 0.613 Libras movement 0.907 0.909 0.908 0.905 0.720 0.897 0.905 0.901 0.906 0.904 0.904 0.907 HSingle sensor_2 0.432 0.432 0.355 0.355 0.432 0.432 0.432 0.431 0.365 0.432 0.432 0.405 Aggregation 0.926 0.926 0.574 0.574 0.926 0.619 0.927 0.927 0.550 0.926 0.926 0.635 Compound 0.890 0.890 0.415 0.415 0.896 0.895 0.898 0.891 0.415 0.712 0.712 0.497 Flame 0.541 0.541 0.522 0.522 0.541 0.531 0.531 0.541 0.522 0.541 0.541 0.538 Pathbased 0.338 0.338 0.362 0.362 0.340 0.339 0.338 0.338 0.362 0.338 0.338 0.635 R15 0.910 0.910 0.817 0.817 0.910 0.856 0.857 0.856 0.817 0.911 0.911 0.574 Spiral 1.000 1.000 0.383 0.383 1.000 0.781 0.781 0.781 0.383 1.000 1.000 0.497 (Continued) Comparison on Similarity Measures in Clustering Continuous Data ues used for ANOVA test (in the table HAverage stands for Hierarchical Average algorithm and HSingle stands for Hierarchical Single link). Distance/Similarity Measures 10 / 20 4.1 Illustration technique A summary of the normalized Rand index results is illustrated in color scale tables in Fig 3 and Fig 4. Since the aim of this study is to investigate and evaluate the accuracy of similarity mea- sures for different dimensional datasets, the tables are organized based on horizontally ascend- ing dataset dimensions. After the first column, which contains the names of the similarity measures, the remaining table is divided in two batches of columns (low and high-dimen- sional) that demonstrate the normalized Rand indexes for low and high-dimensional datasets, respectively. The final column considered in this table is ‘overall average’ in order to explore the most accurate similarity measure in general. This illustrational structure and approach is used for all four algorithms in this paper. was repeated 100 times for each similarity measure, after which the maximum Rand index was considered for comparison. Comparison on Similarity Measures in Clustering Continuous Data Dataset Distance/Similarity Measures Euclidean Average Cosine Chord Mahalanobis Canberra CoeffDiv Czekan IndOfAssoc Manhattan MCharDiff Pearson D31 0.779 0.779 0.818 0.818 0.754 0.740 0.731 0.730 0.518 0.755 0.755 0.536 Iris 0.777 0.777 0.772 0.772 0.343 0.753 0.753 0.772 0.772 0.776 0.776 0.772 sensor_4 0.341 0.341 0.345 0.345 0.346 0.451 0.339 0.333 0.345 0.338 0.338 0.651 Data_User_Modeling 0.309 0.309 0.301 0.301 0.304 0.302 0.302 0.305 0.302 0.299 0.299 0.311 Seeds 0.357 0.357 0.340 0.340 0.337 0.340 0.337 0.340 0.340 0.340 0.340 0.358 Glass 0.304 0.304 0.308 0.308 0.309 0.293 0.294 0.308 0.308 0.308 0.308 0.342 sensor_24 0.347 0.347 0.346 0.346 0.353 0.346 0.347 0.346 0.346 0.345 0.345 0.349 Libras movement 0.187 0.187 0.202 0.202 0.131 0.183 0.183 0.187 0.192 0.187 0.187 0.296 HAverage sensor_2 0.466 0.466 0.634 0.634 0.506 0.466 0.729 0.716 0.634 0.466 0.466 0.404 Aggregation 1.000 1.000 0.778 0.778 0.997 0.930 0.948 0.927 0.778 0.991 0.991 0.643 Compound 0.921 0.921 0.676 0.676 0.921 0.850 0.852 0.829 0.697 0.933 0.933 0.511 Flame 0.721 0.721 0.503 0.503 0.847 0.512 0.529 0.501 0.503 0.689 0.689 0.538 Pathbased 0.738 0.738 0.699 0.699 0.754 0.438 0.377 0.708 0.629 0.724 0.724 0.635 R15 0.999 0.999 0.917 0.917 0.999 0.981 0.963 0.990 0.914 0.998 0.998 0.566 Spiral 0.537 0.537 0.528 0.528 0.557 0.424 0.499 0.498 0.428 0.540 0.540 0.497 D31 0.994 0.994 0.950 0.950 0.996 0.977 0.979 0.986 0.952 0.996 0.996 0.537 Iris 0.892 0.892 0.772 0.772 0.343 0.753 0.753 0.778 0.772 0.886 0.886 0.776 sensor_4 0.338 0.338 0.561 0.561 0.338 0.479 0.479 0.480 0.544 0.376 0.376 0.653 Data_User_Modeling 0.659 0.659 0.301 0.301 0.337 0.302 0.302 0.307 0.309 0.645 0.645 0.594 Seeds 0.887 0.887 0.691 0.691 0.337 0.879 0.581 0.802 0.688 0.802 0.802 0.362 Glass 0.329 0.329 0.570 0.570 0.309 0.328 0.323 0.415 0.415 0.415 0.415 0.369 sensor_24 0.353 0.353 0.538 0.538 0.347 0.498 0.516 0.518 0.521 0.428 0.428 0.446 Libras movement 0.886 0.886 0.892 0.892 0.131 0.582 0.613 0.827 0.844 0.861 0.861 0.886 d i 10 1371/j l 0144059 t002 Table 2. (Continued) 11 / 20 Comparison on Similarity Measures in Clustering Continuous Data was repeated 100 times for each similarity measure, after which the maximum Rand index was considered for comparison. Table 3. ANOVA results for k-means. K_means SS df MS F Prob>F Columns 0.68317 11 0.06211 2.96 0.0013 Error 3.52624 168 0.02099 Total 4.20942 179 doi:10.1371/journal.pone.0144059.t003 Table 3. ANOVA results for k-means. 4.2 Benchmarking similarity measures for partitioning algorithms HAvrage SS df MS F Prob>F Columns 0.47251 11 0.04296 2.62 0.0043 Error 2.52617 154 0.0164 Total 8.91175 175 doi:10.1371/journal.pone.0144059.t005 Table 6. ANOVA results for HSingle. HSingle SS df MS F Prob>F Columns 0.3194 11 0.02903 2.38 0.0095 Error 1.8788 154 0.0122 Total 10.2233 179 doi:10.1371/journal.pone.0144059.t006 Table 5. ANOVA results for HSingle. HAvrage SS df MS F Prob>F Columns 0.47251 11 0.04296 2.62 0.0043 Error 2.52617 154 0.0164 Total 8.91175 175 doi:10.1371/journal.pone.0144059.t005 Table 5. ANOVA results for HSingle. Table 6. ANOVA results for HSingle. HSingle SS df MS F Prob>F Columns 0.3194 11 0.02903 2.38 0.0095 Error 1.8788 154 0.0122 Total 10.2233 179 doi:10.1371/journal.pone.0144059.t006 Table 6. ANOVA results for HSingle. Results were collected after 100 times of repeating the k-means algorithm for each similarity measure and dataset. Fig 6 is a summarized color scale table representing the mean and variance of iteration counts for all 100 algorithm runs. Pearson has the fastest convergence in most datasets. After Pearson, Average is the fastest similarity measure in terms of convergence. Regarding the discussion on Rand index and iteration count, it is manifested that the Aver- age measure is not only accurate in most datasets and with both k-means and k-medoids algo- rithms, but it is the second fastest similarity measure after Pearson in terms of convergence, making it a secure choice when clustering is necessary using k-means or k-medoids algorithms. 4.2 Benchmarking similarity measures for partitioning algorithms Fig 3 represents the results for the k-means algorithm. According to the figure, for low-dimen- sional datasets, the Mahalanobis measure has the highest results among all similarity measures. On the other hand, for high-dimensional datasets, the Coefficient of Divergence is the most accurate with the highest Rand index values. Fig 4 provides the results for the k-medoids algo- rithm. Mean Character Difference is the most precise measure for low-dimensional datasets, while the Cosine measure represents better results in terms of accuracy for high-dimensional datasets. Overall, Mean Character Difference has high accuracy for most datasets. As a general result for the partitioning algorithms used in this study, average distance results in more accurate and reliable outcomes for both algorithms. It is the most accurate measure in the k-means algorithm and at the same time, with very little difference, it stands in second place after Mean Character Difference for the k-medoids algorithm. From another perspective, similarity measures in the k-means algorithm can be investigated to clarify which would lead to the k-means converging faster. However the convergence of k- means and k-medoid algorithms is not guaranteed due to the possibility of falling in local mini- mum trap. For this reason we have run the algorithm 100 times to prevent bias toward this weakness. Fig 5 shows two sample box charts created by using normalized data, which repre- sents the normalized iteration count needed for the convergence of each similarity measure. Table 4. ANOVA results for k-medoids. K_medoids SS df MS F Prob>F Columns 0.69565 11 0.06324 2.62 0.0042 Error 4.05766 168 0.02415 Total 4.75331 179 doi:10.1371/journal.pone.0144059.t004 Table 4. ANOVA results for k-medoids. 12 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Results were collected after 100 times of repeating the k-means algorithm for each similarity measure and dataset. Fig 6 is a summarized color scale table representing the mean and variance of iteration counts for all 100 algorithm runs. Pearson has the fastest convergence in most datasets. After Pearson, Average is the fastest similarity measure in terms of convergence. Regarding the discussion on Rand index and iteration count, it is manifested that the Aver- age measure is not only accurate in most datasets and with both k-means and k-medoids algo- Table 5. ANOVA results for HSingle. 4.3 Benchmarking similarity measures for hierarchical algorithms In a previous section, the influence of different similarity measures on k-means and k-medoids algorithms as partitioning algorithms was evaluated and compared. In this section, the results for Single-link and Group Average algorithms, which are two hierarchical clustering Table 7. Dataset Details. PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Fig 3. K-means color scale table for normalized Rand index values (green represents the highest and it changes to red, which is the lowest Rand index value). algorithms, will be discussed for each similarity measure in terms of the Rand index. Fig 7 and Fig 8 represent sample bar charts of the results. The bar charts include 6 sample datasets. Because bar charts for all datasets and similarity measures would be jumbled, the results are presented using color scale tables for easier understanding and discussion. As discussed in the last section, Fig 9 and Fig 10 are two color scale tables that demonstrate the normalized Rand index values for each similarity measure. The results in Fig 9 for Single-link show that for low- dimensional datasets, the Mahalanobis distance is the most accurate similarity measure and Pearson is the best among other measures for high-dimensional datasets. The overall average column in this figure shows that generally, Pearson presents the highest accuracy and the Aver- age and Euclidean distances are among the most accurate measures. For the Group Average algorithm, as seen in Fig 10, Euclidean and Average are the best among all similarity measures for low-dimensional datasets. For high-dimensional datasets, Cosine and Chord are the most accurate measures. Generally, in the Group Average algorithm, Manhattan and Mean Charac- ter Difference have the best overall Rand index results followed by Euclidean and Average. Considering the overall results, it is clear that the Average measure is constantly among the best measures, and for both Single-link and Group Average algorithms. algorithms, will be discussed for each similarity measure in terms of the Rand index. Fig 7 and Fig 8 represent sample bar charts of the results. The bar charts include 6 sample datasets. algorithms, will be discussed for each similarity measure in terms of the Rand index. Fig 7 and Fig 8 represent sample bar charts of the results. The bar charts include 6 sample datasets. Because bar charts for all datasets and similarity measures would be jumbled, the results are presented using color scale tables for easier understanding and discussion. As discussed in the last section, Fig 9 and Fig 10 are two color scale tables that demonstrate the normalized Rand index values for each similarity measure. Table 7. Dataset Details. Table 7. Dataset Details. Dataset Name Dimensions Clusters Vectors Aggregation 2 7 788 Compound 2 6 399 D31 2 31 3100 Flame 2 2 240 Path based 2 3 300 R15 2 15 600 Sensor_2 2 4 5456 Spiral 2 3 312 Iris 4 3 150 Sensor_4 4 4 5456 Data_User_Modeling 5 4 258 Seeds 7 3 210 Glass 9 7 214 Sensor_24 24 4 5456 Movement Libera 90 15 360 doi:10.1371/journal.pone.0144059.t007 13 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 201 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 doi:10.1371/journal.pone.0144059.g004 doi:10.1371/journal.pone.0144059.g003 Comparison on Similarity Measures in Clustering Continuous Data Fig 5. Sample box charts for k-means iteration counts created with a collection of normalized results after 100 times of repeating the algorithm for each similarity measure and dataset. Fig 5. Sample box charts for k-means iteration counts created with a collection of normalized results after 100 times of repeating the algorithm for each similarity measure and dataset eration counts created with a collection of normalized results after 100 times of repeating the algorithm for Fig 5. Sample box charts for k-means iteration counts created with a collection of normalized results after 1 each similarity measure and dataset. Fig 5. Sample box charts for k-means iteration counts created with a collection of normalized results after 100 times of repeating the algorithm for each similarity measure and dataset. doi:10.1371/journal.pone.0144059.g005 doi:10.1371/journal.pone.0144059.g005 Pearson correlation doesn’t work properly for low dimensional datasets while it shows better results for high dimensional datasets. Fig 11 illustrates the overall average RI in all 4 algorithms and all 15 datasets also uphold the same conclusion. Fig 12 at the other hand shows the average RI for 4 algorithms separately. It can be inferred that Average measure among other measures is more accurate. Furthermore, by using the k-means algorithm, this similarity measure is the fastest after Pearson in terms of convergence. The results in Fig 9 for Single-link show that for low- dimensional datasets, the Mahalanobis distance is the most accurate similarity measure and Pearson is the best among other measures for high-dimensional datasets. The overall average column in this figure shows that generally, Pearson presents the highest accuracy and the Aver- age and Euclidean distances are among the most accurate measures. For the Group Average algorithm, as seen in Fig 10, Euclidean and Average are the best among all similarity measures for low-dimensional datasets. For high-dimensional datasets, Cosine and Chord are the most accurate measures. Generally, in the Group Average algorithm, Manhattan and Mean Charac- ter Difference have the best overall Rand index results followed by Euclidean and Average. Considering the overall results, it is clear that the Average measure is constantly among the best measures, and for both Single-link and Group Average algorithms. A review of the results and discussions on the k-means, k-medoids, Single-link and Group Average algorithms reveals that by considering the overall results, the Average measure is regu- larly among the most accurate measures for all four algorithms. According to heat map tables it is noticeable that Pearson correlation is behaving differently in comparison to other distance measures. It specially shows very weak results with centroid based algorithms, k-means and k-medoids. Based on the results in this research, in general, Fig 4. K-medoids color scale table for normalized Rand index values (green is the highest and changes color to red, which is the lowest Rand index value). PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 14 / 20 Comparison on Similarity Measures in Clustering Continuous Data Fig 6. Color scale table for iteration count mean and variance (green is the lowest and it changes color to red, which shows the greatest iteration count value). datasets. The accuracy of similarity measures in terms of the Rand index was studied and the best similarity measures for each of the low and high-dimensional datasets were discussed for four well-known distance-based algorithms. Overall, the results indicate that Average Distance is among the top most accurate measures for all clustering algorithms employed in this article. Moreover, this measure is one of the fastest in terms of convergence when k-means is the target clustering algorithm. Based on results in this study, in general, Pearson correlation is not rec- ommended for low dimensional datasets. It also is not compatible with centroid based algo- rithms. However, this measure is mostly recommended for high dimensional datasets and by using hierarchical approaches. Fig 6. Color scale table for iteration count mean and variance (green is the lowest and it changes color to red, which shows the greatest iteration count value). doi:10.1371/journal.pone.0144059.g006 Fig 7. Bar chart of normalized Rand index values for selected datasets using the Single-link algorithm. doi:10.1371/journal.pone.0144059.g007 Fig 6. Color scale table for iteration count mean and variance (green is the lowest and it changes color to red, which shows the greatest iteration count value). count mean and variance (green is the lowest and it changes color to red, which shows the greatest iteration doi:10.1371/journal.pone.0144059.g006 datasets. The accuracy of similarity measures in terms of the Rand index was studied and the best similarity measures for each of the low and high-dimensional datasets were discussed for four well-known distance-based algorithms. Overall, the results indicate that Average Distance is among the top most accurate measures for all clustering algorithms employed in this article. Moreover, this measure is one of the fastest in terms of convergence when k-means is the target clustering algorithm. Based on results in this study, in general, Pearson correlation is not rec- ommended for low dimensional datasets. It also is not compatible with centroid based algo- rithms. However, this measure is mostly recommended for high dimensional datasets and by using hierarchical approaches. Fig 7. Bar chart of normalized Rand index values for selected datasets using the Single-link algorithm. doi:10 1371/journal pone 0144059 g007 Fig 7. Concluding Remarks Selecting the right distance measure is one of the challenges encountered by professionals and researchers when attempting to deploy a distance-based clustering algorithm to a dataset. The variety of similarity measures can cause confusion and difficulties in choosing a suitable mea- sure. Similarity measures may perform differently for datasets with diverse dimensionalities. The aim of this study was to clarify which similarity measures are more appropriate for low- dimensional and which perform better for high-dimensional datasets in the experiments. In this work, similarity measures for clustering numerical data in distance-based algorithms were compared and benchmarked using 15 datasets categorized as low and high-dimensional PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 15 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Acknowledgments Ali Seyed Shirkhorshidi would like to express his sincere gratitude to Fatemeh Zahedifar and Seyed Mohammad Reza Shirkhorshidi, who helped in revising and preparing the paper. Bar chart of normalized Rand index values for selected datasets using the Single-link algorithm. Fig 7. Bar chart of normalized Rand index values for selected datasets using the Single-link algorithm. doi:10.1371/journal.pone.0144059.g007 16 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data Fig 8. Bar chart of normalized Rand index values for selected datasets using the Group Average algorithm. doi:10.1371/journal.pone.0144059.g008 Fig 8. Bar chart of normalized Rand index values for selected datasets using the Group Average algorithm. Fig 8. Bar chart of normalized Rand index values for selected datasets using the Group Average algorithm. doi:10.1371/journal.pone.0144059.g008 doi:10.1371/journal.pone.0144059.g008 Fig 9. Color scale table of normalized Rand index values for the Single-link method (green is the highest and it changes color to red, which represents the lowest Rand index value). Fig 9. Color scale table of normalized Rand index values for the Single-link method (green is the highest and it changes color to red, which represents the lowest Rand index value). doi:10.1371/journal.pone.0144059.g009 Fig 10. Color scale table of normalized Rand index values for Group Average (green is the highest and it changes color to red, which signifies the lowest Rand index value). d i 10 1371/j l 0144059 010 Fig 9. Color scale table of normalized Rand index values for the Single-link method (green is the highest and it changes color to red, which represents the lowest Rand index value). Fig 9. Color scale table of normalized Rand index values for the Single-link method (green is the highest represents the lowest Rand index value). doi:10.1371/journal.pone.0144059.g009 doi:10.1371/journal.pone.0144059.g009 Fig 10. Color scale table of normalized Rand index values for Group Average (green is the highest and it changes color to red, which signifies the lowest Rand index value). PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 17 / 20 17 / 20 Acknowledgments Fig 11. Overall RI Average. doi:10.1371/journal.pone.0144059.g011 Fig 12. Average RI for four algorithms. doi:10.1371/journal.pone.0144059.g012 Comparison on Similarity Measures in Clustering Continuous Data Comparison on Similarity Measures in Clustering Continuous Data Fig 11. Overall RI Average. doi:10.1371/journal.pone.0144059.g011 Fig 11. Overall RI Average. doi:10.1371/journal.pone.0144059.g011 Fig 12. Average RI for four algorithms. doi:10 1371/journal pone 0144059 g012 Fig 12. Average RI for four algorithms. Fig 12. Average RI for four algorithms. doi:10.1371/journal.pone.0144059.g012 Author Contributions Conceived and designed the experiments: ASS SA TYW. Performed the experiments: ASS SA TYW. Analyzed the data: ASS SA TYW. Contributed reagents/materials/analysis tools: ASS SA TYW. Wrote the paper: ASS SA TYW. 1. Shirkhorshidi AS, Aghabozorgi S, Wah TY, Herawan T. Big Data Clustering: A Review. Computational Science and Its Applications–ICCSA 2014. Springer; 2014. pp. 707–720. doi: 10.1007/978-3-319- 09156-3_49 References 18 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data 2. Mohebi A, Aghabozorgi S, Ying Wah T, Herawan T, Yahyapour R. Iterative big data clustering algo- rithms: a review. Softw Pract Exp. 2015; n/a–n/a. doi: 10.1002/spe.2341 3. Bezdek JC, Ehrlich R, Full W. FCM: The fuzzy c-means clustering algorithm [Internet]. Computers & Geosciences. 1984. pp. 191–203. doi: 10.1016/0098-3004(84)90020-7 4. Peters G. Some refinements of rough k-means clustering. Pattern Recognit. 2006; 39: 1481–1491. doi: 10.1016/j.patcog.2006.02.002 5. Cui W, Wang Y, Fan Y, Feng Y, Lei T. Localized FCM clustering with spatial information for medical image segmentation and bias field estimation. Int J Biomed Imaging. 2013; 2013: 930301. doi: 10. 1155/2013/930301 PMID: 23997761 6. Ye J, Lazar NA, Li Y. Sparse geostatistical analysis in clustering fMRI time series. J Neurosci Methods. 2011; 199: 336–345. doi: 10.1016/j.jneumeth.2011.05.016 PMID: 21641934 7. Meyer G. Chinrungrueng F. J. Spatiotemporal clustering of fMRI time series in the spectral domain. Med Image Anal. 2004; 9: 51–68. 8. An L, Doerge RW. Dynamic Clustering of Gene Expression [Internet]. ISRN Bioinformatics. 2012. pp. 1–12. doi: 10.5402/2012/537217 9. De Souto MCP, Costa IG, de Araujo DS a, Ludermir TB, Schliep A. Clustering cancer gene expression data: a comparative study. BMC Bioinformatics. 2008; 9: 497. doi: 10.1186/1471-2105-9-497 PMID: 19038021 10. Ernst J, Nau GJ, Bar-Joseph Z. Clustering short time series gene expression data. Bioinformatics. 2005; 21: i159 –i168. doi: 10.1093/bioinformatics/bti1022 PMID: 15961453 11. Moolgavkar SH, Mcclellan RO, Dewanji A, Turim J, Georg Luebeck E, Edwards M. Time-series analy- ses of air pollution and mortality in the United States: A subsampling approach. Environ Health Per- spect. 2013; 121: 73–78. doi: 10.1289/ehp.1104507 PMID: 23108284 12. Ignaccolo R, Ghigo S, Bande S. Functional zoning for air quality. Environ Ecol Stat. 2013; 20: 109–127. doi: 10.1007/s10651-012-0210-7 13. Carbajal-Hernández JJ, Sánchez-Fernández LP, Carrasco-Ochoa J a., Martínez-Trinidad JF. Assess- ment and prediction of air quality using fuzzy logic and autoregressive models. Atmos Environ. Elsevier Ltd; 2012; 60: 37–50. doi: 10.1016/j.atmosenv.2012.06.004 14. Shen W, Babushkin V, Aung Z, Woon WL. An ensemble model for day-ahead electricity demand time series forecasting. Proc fourth Int Conf Futur energy Syst—e-Energy ‘13. New York, New York, USA: ACM Press; 2013; 51. doi: 10.1145/2487166.2487173 15. Iglesias F, Kastner W. Analysis of Similarity Measures in Times Series Clustering for the Discovery of Building Energy Patterns. Energies. 2013; 6: 579–597. doi: 10.3390/en6020579 16. PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 References Wijk J Van, Selow E Van. Cluster and calendar based visualization of time series data. Proc 1999 IEEE Symp Inf Vis. IEEE Comput. Soc; 1999; 4–9. doi: 10.1109/INFVIS.1999.801851 17. Aghabozorgi S, Seyed Shirkhorshidi A, Ying Wah T. Time-series clustering–A decade review. Inf Syst. 2015; 53: 16–38. doi: 10.1016/j.is.2015.04.007 18. Bache K, Lichman M. UCI Machine Learning Repository [Internet]. 2013. Available: http://archive.ics. uci.edu/ml 19. Speech and Image Processing Unit, University of Eastern Finland [Internet]. Available: http://cs. joensuu.fi/sipu/datasets/ 20. Boriah S, Chandola V, Kumar V. Similarity measures for categorical data: A comparative evaluation. In Proceedings of the eighth SIAM International Conference on Data Mining. 2008. pp. 243–254. doi: 10. 1137/1.9781611972788.22 21. Lourenco F, Lobo V, Bacao F. Binary-based similarity measures for categorical data and their applica- tion in Self-Organizing Maps. 2004; 1–18. 22. Deshpande R, VanderSluis B, Myers CL. Comparison of Profile Similarity Measures for Genetic Inter- action Networks. PLoS One. 2013; 8: e68664. doi: 10.1371/journal.pone.0068664 PMID: 23874711 23. Strehl A, Ghosh J, Mooney R. Impact of similarity measures on web-page clustering. Work Artif Intell Web . . .. 2000; 58–64. Available: http://www.aaai.org/Papers/Workshops/2000/WS-00-01/WS00-01- 011.pdf 24. Zhang Z, Huang K, Tan T. Comparison of similarity measures for trajectory clustering in outdoor surveil- lance scenes. Proceedings—International Conference on Pattern Recognition. IEEE; 2006. pp. 1135– 1138. doi: 10.1109/ICPR.2006.392 25. Khalifa A Al, Haranczyk M, Holliday J. Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound Selection. J Chem Inf Model. 2009; 49: 1193–1201. doi: 10. 1021/ci8004644 PMID: 19405526 19 / 20 PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 Comparison on Similarity Measures in Clustering Continuous Data 26. Dunham MH. Data Mining Introductor and Advanced Topics. Upper Saddle River, New Jersey: Pren- tice Hall; 2003. 27. Gan G, Ma C, Wu J. Data Clustering theory, Algorithms, and Applications. ASASIAM Series on Statis- tics and Applied. Society for Industrial and Applied Mathematics; 2007. 28. Han J, Kamber M, Pei J. Data mining: concepts and techniques. Morgan Kaufmann; 2006. 29. Cha Sung-Hyuk. Comprehensive survey on distance/similarity measures between probability density functions. Int J Math Model methods Appl Sci. 2007; 1: 300–307. doi: 10.1.1.154.8446 30. Mao J, Jain AK. A self-organizing network for hyperellipsoidal clustering (HEC). IEEE Trans Neural Net- works. 1996; 7: 16–29. doi: 10.1109/72.478389 PMID: 18255555 31. Jain AK, Murty MN, Flynn PJ. Data clustering: a review. ACM Computing Surveys. ACM; 1999. pp. 264–323. doi: 10.1145/331499.331504 32. Wilson D, Martinez T. Improved heterogeneous distance functions. PLOS ONE | DOI:10.1371/journal.pone.0144059 December 11, 2015 References JAIR. 1997; 6: 1–34. Available: http://arxiv.org/abs/cs/9701101 33. Xu R, Wunsch D. Survey of clustering algorithms [Internet]. IEEE Transactions on Neural Networks. 2005. pp. 645–678. doi: 10.1109/TNN.2005.845141 PMID: 15940994 34. Perlibakas V. Distance measures for PCA-based face recognition. Pattern Recognit Lett. 2004; 25: 711–724. doi: 10.1016/j.patrec.2004.01.011 35. Legendre P, Legendre L. Numerical ecology. Elsevier; 2012. 36. Wang H, Wang H, Wang W, Wang W, Yang H, Yang H, et al. Clustering by pattern similarity in large data sets. 2002 ACM SIGMOD international conference on Management of Data. New York, New York, USA: ACM Press; 2002. p. 394. doi: 10.1145/564691.564737 37. Hand D, Mannila H, Smyth P. Principles of data mining(adaptive computation and machine learning). Drug safety. 2001. 38. Ji M, Xie F, Ping Y. A dynamic fuzzy cluster algorithm for time series. Abstr Appl Anal. 2013; 2013: 1–7. doi: 10.1155/2013/183410 39. János Abonyi BF. Cluster Analysis for Data Mining and System Identification. Springer; 2007. 40. Jiang D, Tang C, Zhang A. Cluster analysis for gene expression data: A survey. IEEE Trans Knowl Data Eng. 2004; 16: 1370–1386. doi: 10.1109/TKDE.2004.68 41. Santos JM, Embrechts M. On the Use of the Adjusted Rand Index as a Metric for Evaluating Supervised Classification. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelli- gence and Lecture Notes in Bioinformatics). 2009. pp. 175–184. doi: 10.1007/978-3-642-04277-5_18 42. Hubert L, Arabie P. Comparing partitions. J Classif. Springer; 1985; 2: 193–218. doi: 10.1007/ BF01908075 43. Fisher R. Statistical methods for research workers [Internet]. Edinburgh: Oliver and Boyd; 1925. Avail- able: https://scholar.google.com/scholar?hl=en&q=Statistical+Methods+for+Research +Workers&btnG=&as_sdt=1%2C5&as_sdtp=#0 44. Cumming G. Understanding the new statistics: Effect sizes, confidence intervals, and meta-analysis [Internet]. 2013. Available: https://books.google.com/books?hl=en&lr=&id=1W6laNc7Xt8C&oi= fnd&pg=PR1&dq=Understanding+The+New+Statistics:+Effect+Sizes,+Confidence+Intervals,+and +Meta-Analysis&ots=PuHRVGc55O&sig=cEg6l3tSxFHlTI5dvubr1j7yMpI 45. Schlotzhauer S. Elementary statistics using JMP [Internet]. 2007. Available: https://books.google.com/ books?hl=en&lr=&id=5JYM1WxGDz8C&oi=fnd&pg=PR3&dq=Elementary+Statistics+Using +JMP&ots=MZOht9zZOP&sig=IFCsAn4Nd9clwioPf3qS_QXPzKc 46. Gionis A, Mannila H, Tsaparas P. Clustering aggregation. ACM Trans Knowl Discov Data. 2005; 1: Arti- cle 4. doi: 10.1109/ICDE.2005.34 47. Zahn CT. Graph-Theoretical Methods for Detecting and Describing Gestalt Clusters. IEEE Trans Com- put. 1971; C-20: 68–86. doi: 10.1109/T-C.1971.223083 48. Veenman CJ, Reinders MJT, Backer E. A maximum variance cluster algorithm. IEEE Trans Pattern Anal Mach Intell. 2002; 24: 1273–1280. doi: 10.1109/TPAMI.2002.1033218 49. Fu L, Medico E. FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data. BMC Bioinformatics. 2007; 8: 3. doi: 10.1186/1471-2105-8-3 PMID: 17204155 20 / 20
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English
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The German Empire of To-day: Outlines of its Formation and Development.
˜The œeconomic journal/Economic journal
1,902
public-domain
3,467
Review Author(s): L. L. Price Review by: L. L. Price Source: The Economic Journal, Vol. 12, No. 47 (Sep., 1902), pp. 380-385 Published by: Wiley on behalf of the Royal Economic Society Stable URL: http://www.jstor.org/stable/2956904 Accessed: 24-06-2016 20:50 UTC Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact support@jstor.org. Royal Economic Society, Wiley are collaborating with JSTOR to digitize, preserve and extend access to The Economic Journal This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms 38 ONOMIC JOURNAL The Gernman Empire of To-day: Outlines of its Formation and Developmrent. By " Veritas." Crown 8vo., pp. vii, 340. (London: Longmans, Green & Co. 1902.) THE idea prompting the production of this book must have been as difficult to realise as it was fascinating to conceive. Few more interesting or valuable contributions could Jbe made to contemporary economics than that supplied by a full authoritative discriminating account of modern Germany. An accurate description of the new G-ermany, which has arisen in Europe since 1870, furnishing not merely a bare catalogue of facts, but also a searching examination of their significance, would, in a real sense, meet a "felt want." The author of the volume before us is guilty of no exaggeration when he says that " a growth similar to that of modern Germany has rarely been seen before " ; and he is stating the literal truth, when he affirms that " Germany has now become, not only a political power of the first magnitude, but also a commercial power of the first rank." It is this last circumstance which has lately aroused nervous alarm in our own country. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms To the keen impartial observer, indeed, who looks be- yond the present to a future not very remote, German competition must seem a less serious phenomenon for us than the trading and industrial rivalry of the United States, and it may well be that we have more to learn from American methods than we can with advantage derive from a study of Germany. But for the moment, at any rate, however ominous and significant be the portents of the recent " invasion " of English trade by trans-Atlantic capital, it is Germany, which has been persistently presented to our merchants and manufacturers, our administrators and instructors, as the pattern they ought to imitate. Our educational systems, we are told, no less than our military arrangements, should be remodelled on German lines. Our business men should substitute some of the German anxiety to meet the minute unreasoning wants of their customers for their own natural but costly contempt of petty departures from familiar tradition. Our Govern- ment should exhibit some of the intelligent and'constant solicitude with which German administration has pushed the interests of German trade in various directions. No doubt some of the advice thus generously tendered is exaggerated or mistaken. No doubt some amount of the apprehensiveness, widely felt for German competition, rests on an imaginary rather than a real foundation. No doubt it might in the end prove as foolish and mischievous to copy slavishly, in an English environment, what had succeeded among German surroundings, as it would be foolhardy or fatal to disregard the lessons which Germany could teach t6 England. But for these reasons a very pressing need of the times is such a full, impartial, and lucid account of the significant characteristics of modern Germany, that the plain man can discern for himself without difficulty the causes and limits of German commercial and industrial success We require in short for " VERITAS ": THE GERMAN EMPIRE OF TO-D 381 Germany since 1870 a writer who will accomplish what Mr. Bodley has partly done for France, what Mr. Bryce has achieved on a larger scale for America, and what Messrs. King and Okey have recently performed within more limited dimensions for Italy. The book before us, valuable and interesting as it is, hardly fulfils these conditions. The author's intentions in fact are much less com- prehensive. He describes his chapters as "outlines"; and we think that the description is just. "They do not," he says, " put anything materially new before the public, but merely attempt to present a short retrospective account of certain specific phases of German progress in recent times, preceded by a brief summary of political and constitu- tional history up to 1871." Accordingly, after a short introduction and a chapter on German History before the war, he reviews, in successive chapters, the "national progress" since 1871, the "Army and the Navy," Commercial, Traffic, and Colonial Policy, " Colonial Possessions," "' National Education," and "' German Finances." These chapters contain in a moderate compass a large quantity of the facts and figures necessary to an informed acquaintance with modern Germany. The facts are judiciously selected, and carefully arranged. The figures -are competently handled and are derived from authorita- tive sources. The author shows that he possesses that intimate knowledge of his subject, which enables him to present his readers with a satisfactory digest, and removes any suspicion of intentional exaggeration or of accidental misunderstanding. We cannot but be confident, as we read his pages, that we are being told what we ought to know by a skilful instructor; and for this able and expert guidance we are duly grateful. We are the more sorry that he has imposed on himself certain limitations, which mar the completeness of his work. " Well-known facts and authentic events," he states, " are merely placed on record here, leaving to others all enigmatical inferences as to their significance." Much may be said for this attitude from the standpoint of the author himself; and it is not seldom as delusive as it is tempting to stray from the firm basis of fact on to the uncertain ground of prophecy and inference.. But from the point of view of the reader this attitude carries with it some disadvantage; and we believe that the book would have been more interesting, and not less valuable, had the facts and figures been interspersed with a greater quantity of suggestion and reflection. As it is, the tedium naturally begotten of a mass of figures drily stated, and of facts recorded with little, if any comment, calls urgently for some relief. We are in danger of failing to see the wood for the trees. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms We skim the surface of affairs without discerning the real forces which are active beneath. We are not sure that Mr. Dawson's excellent little book on "sGerman Life in Town and Country " does not convey a more satisfactory and accurate impression, because it is confessedly less statistical, and more descrip- tive; and we are certain that we have still to wait for a treatise on modern Germany, which we can place in the same category as 38 ONOMIC JOURNAL the books we have previously mentioned on France, Italy, and America. the books we have previously mentioned on France, Italy, and America. We must then take the account now given by " Veritas" as no more than an opportune instalment for which we may be duly grateful. Within its necessary limitations we may ask-What does it tell us of the facts and figures of modern Germany ? What evidence does it furnish of the drawbacks and obstacles attendant on its growth ? What hints and suggestions does it supply of the causes which have promoted its remarkable development ? To these three questions we will attempt briefly to give an answer. Of the actual facts of the growth of modern Germany "Veritas" furnishes an authentic summary, which, we do not doubt, will be found of great assistance to students and to publicists. His figures are impressive. An advance of population is, of course, no convincing proof of an increase in the prosperity of a nation, and the social reformer of to-day, although he no longer, like John Stuart Mill, forms all his opinions under the depressing and distorting influence of the fear of over-population, will yet wish to ask something of the quality as well as the quantity of the inhabitants of any particular country. Yet there can be little doubt that an advance in the numbers of a nation is as much prima facie evidence of their growth in energy and influence as a decline of population affords indication that something is wron. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms The feeling of despondency which has lately taken so powerful a hold of many philosophic and instructed French writers is as significant in this direction as the fact, noted by " Veritas," that the " fecundity of the German race in the latter part of the nineteenth century has far exceeded that of other European powers." In 1871 the Germans numbered 41,000,000, in 1901 they amounted to 57,000,000, and they are increasing " with a rapidity of not less than an average of 800,000 persoiig per year." This growth of population has been accompanied by no less remarkable a growth in industry and commerce. There has been a noteworthy change in the proportions of the people engaged respectively in agricultural and in industrial and commercial pursuits. In 1882, out of every 1,000, 425 were supported by agriculture, 355 by industries, and 100 by commerce; in 1895 the respective numbers were 357, 391, and 115. The agricultural population of the Emnpire has sunk from some 60 per cent. thirty years ago to some 35 per cent. to-day. The statistics of the advance of foreign commerce, so far as they are available for exact comparison, similarly indicate a growth from ?279,000,000 in 1872 to ?518,000,000 in 1900. Of the former total ?163,000,000 represented imports and ?116,000,000 exports, of the latter ?288,000,000 represented imports and ?230,000,0Q0 exports. The "1 main part " of the increase in the imports consists, not of manu- factured goods, for " home-made articles are more and more replacing formerly imported commodities," but of "the foreign food stuffs indispensable for the support of the people, who are, year by year, becoming less and less a self-contained nation," The development of " VERITAS : THE GERMAN EMPIRE OF TO-D 383 foreign trade has been attended by no less rapid an increase in shipping. " The German mercantile marine is now the second in the world, with a total registered tonnage of 3,009,225 (January 1, 1901), of which 2,463,416 belong to steamers." "The most striking features in its expansion are, firstly, its rapid growth in the last five years, and, secondly, the large average size of the steamers individually." These, perhaps, are the most noteworthy figures illustrative of the "national progress"; but the general conclusion to which they point is supported by " the larger average deposits in the savings banks, the increased number and value of the life assurances effected, and the yearly greater total of persons taxed as enjoying moderate incomes." The position of the "national finances " on the whole corroborates this evidence, while the completion of the Civil Code in 1896, and the consequent enforcement in 1900 of the improved Commercial Code, are important signs that the work of unification, on which the outward stamp of approval was placed before the public of Europe in the palace of Versailles in January, 1871, has received the necessary inner confirmation during the succeeding quarter of a century. g g q y There is, it is true, another " side to the shield" ; and the future of the German people is not without serious dangers, actual and threatened. German unity is, indeed, an accomplished fact; but relics survive of the conditions which prevailed when Gerinany was disunited, and some cumbrousness attaches as a consequence to sorne financial and administrative arrangements. The Navy, for examnple, differs in this respect from the Army, for imperial control has a freer hand in its administration; and by a wise prescience matters of trade and commerce were mostly placed in the sphere of federal authority. A far more disturbing factor is the struggle between the agrarian and the industrial interests, which has recently been reflected in tariff discussions, and in that legislation, which has for the moment gone some way to " isolating" Germany in Europe, and has excited the hostility, or at least the mistrust, of her neighbours on the east and the south. Here the drift of events may seem to incline definitely in one direction; but there may be many pitfalls to avoid, and serious obstacles to overcome by the way before the struggle between the conflicting interests is over. The problem is connected closely with another. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms For the moment Germany has been suffering from severe commercial and industrial depression, and one great need of her economic future will assuredly be an increase of capital. But another more cogent need will be an outlet for her population and her trade; and German colonial development cannot be said as yet to'have been an unqualified success, or to have enlisted in its support the favouring enthusiasm of the whole nation. A " world-policy " is an attractive conception to a people justly ambitious and conscious of their great capabilities; but it cannot be carried into effect without expenditure on a protecting navy, or the acquisition of large suitable colonies, where Germans will be willing to settle. Geriian colonial expansion may be in its infancy; 38 ONOMIC JOURNAL but no one can read the two chapters in this book on " colonial policy," and "colonial possessions," without feeling that, while the former is pregnant with possibilities of dangerous, costly conflict with the similar ambitions of other European powers, the latter are at present little more than expensive toys. It will require no small discretion on the part of German statesmen to overcome difficulties like these, which will face them in the immediate future. But to what causes, we may ask, in conclusion, has the past success been due? " Veritas " would answer, and, in our opinion, correctly, to the " scientific spirit," which has pervaded the people and their rulers. A thorough study of minute detail, and a readiness to adopt small improvements, have issued from this spirit. The German may be plodding where the American is smart, and he may be cautious where the American is bold; but his willingness to take enormous pains to suit his customers, his informed intelligence, trained to recognise the advantage of comprehensive and accurate knowledge, his complete belief in systema tic instruction, have enabled him to win his way to a very important place in the commerce of the world. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms Canals have not, as in other countries, been neglected or disused in consequence of railway development, but the official intelligence has sought by careful thought and experiment how to make both railway and canal work in harmony into a complete system of efficient transport. In the same way the State, recognising the supremie importance of trained intelli- gence, has systematically fostered national education as the fundamental basis on which national prosperity and power must be built; and it has deliberately set itself to promote commerce and industry by active guidance and pervasive control. It has been confident that it can perform a useful function in economic affairs by developing natural abilities and by bringing superior trained intelligence to bear on its own special work. The protective tariff thus springs from the same source as that which has begotten " standardisation "-the belief that "science," in the broadest sense of the term, has a real place, and can exert a beneficial influence, in the practical affairs of economic life. The belief may lead to unfamiliar and somiietimes to unexpected conse- quences; but it is certanly not irrational, and it has gone far to produce the success of modern Germany. On this text "Y Veritas " in the book before us delivers a telling discourse. L. L. PRICE L. PRICE Gr*UBndbeditngungen der gesellschaftlichen Woldfahrt. By SAMUEL REIVAI. (Leipzig: 1902.) AT the inaugural meeting of the British Economic Association, Professor Marshall expressed the hope that the Association would not " exert a wholesome influence in the sense of setting up a standard of orthodoxy. Science," he said, " could be true or false, but could not be orthodox; and the best way to find out what was true was to welcome the criticisms of all people who knew what they were talking about." It is in this spirit that Mr. Revai's book should be approached, for he is not only a social reformer, a man who wishes ardently to alter existing industrial and social arrangements, but also a determined opponent of many of the views held by scientific economists. His opinions as to the nature of value, money, and credit, are not those generally in vogue, and, it must be said, are not obtained by such a careful and scientific analysis of modern conditions as miight be expected from one who is attacking economic science. We are ready to complain of the excessive " officialism " of Germans, but there is no little truth in the contention of" Veritas " that in the " German Empire, as a modern State, there has perhaps been less than elsewhere of that ' red- tape,' bureaucratic intractability which so often results in an unfortunate paralysation of all active initiative." The German is, no doubt, less impatient than an Englishman under bureaucratic control; but this, perhaps, is partly because his officials have in reality a more enlightened mind. We may talk, as we often do, with disapproval of the " methods of the drill-sergeant; " and we may resent their introduction into our own freer atmosphere of individual liberty. It is true that there is a difference, sometimes ignored, between the realities of compulsory military service in a country, whose industrial development has begun and continued under such restraint, and the possibilities of conscription among ourselves, who have hitherto felt no such necessity; and the effects for good or for evil of militarism upon industry may be widely severed in the two instances. But none the less the German workman, perhaps by nature, and certainly by military training, has been habit- uated to orderly obedience to superior intelligence; and the German army has established itself as a model precisely because a " scientific spirit" has been brought to bear on its organisation. The original cause of this surely is the high standard and wide diffusion of German national education. The German believes in education, and he has for a longer time than any other leading European people carried this belief into effect. He believes in trained intelligence. He believes in method and in system. Such a belief has, it is true, its dangers and its limitations. Trained intelligence can accomplish much, but it cannot supply the lack of originality. Orderly conformity to rule may avoid disturbing friction, without taking the place of resource- ful independence. In short, education will not create commanding 385 GRUNDBEDINGUNGEN DER GESELLSCHAFTLICHEN WOHLFAHRT genius, though it will increase the average power of ordinary ability. This it is, we think, which has been achieved by modern Germany. The chapter on " traffic policy" is a striking illustration. This content downloaded from 131.247.112.3 on Fri, 24 Jun 2016 20:50:26 UTC All use subject to http://about.jstor.org/terms But as he comes forward rather as an opponeht of existing conditions, as an avowed enemy of private property, of the use of money, and so forth, it is much more important and interesting to consider his suggested reforms than his criticisms of points of abstract theory. No one can feel satisfied with Western European civilisation. Poverty, often of the most distressing kind, is always at our door. Is this state of affairs necessary ? If not, what are the causes and what No. 47. 1 No. 47. No. 47. No. 47.
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Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development
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Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development Ryan H. Hansen1,2, Andrea C. Timm3, Collin M. Timm3, Amber N. Bible3, Jennifer L. Morrell-Falvey2,3, Dale A. Pelletier3, Michael L. Simpson2,3, Mitchel J. Doktycz2,3, Scott T. Retterer2,3* Ryan H. Hansen1,2, Andrea C. Timm3, Collin M. Timm3, Amber N. Bible3, Jennifer L. Morrell-Falvey2,3, Dale A. Pelletier3, Michael L. Simpson2,3, Mitchel J. Doktycz2,3, Scott T. Retterer2,3* a1111 1 Kansas State University, Manhattan, Kansas, United States of America, 2 The University of Tennessee, Knoxville, Tennessee, United States of America, 3 Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America * rettererst@ornl.gov * rettererst@ornl.gov Data Availability Statement: All relevant data are within the paper and its Supporting Information files. Funding: This work was supported in part by the Genomic Science Program, U.S. Department of Energy, Office of Science, Biological and Environmental Research, as part of the Plant Microbe Interfaces Scientific Focus Area (http://pmi.ornl.gov) as well as ORNL Laboratory Directed Research and Development. Microwell arrays were fabricated and characterized at the Center for Nanophase Materials Sciences User Facilities Division, Office of Basic Energy Sciences, U.S. Department of Energy. The OPEN ACCESS The structure and function of microbial communities is deeply influenced by the physical and chemical architecture of the local microenvironment and the abundance of its commu- nity members. The complexity of this natural parameter space has made characterization of the key drivers of community development difficult. In order to facilitate these characteriza- tions, we have developed a microwell platform designed to screen microbial growth and interactions across a wide variety of physical and initial conditions. Assembly of microbial communities into microwells was achieved using a novel biofabrication method that exploits well feature sizes for control of innoculum levels. Wells with incrementally smaller size fea- tures created populations with increasingly larger variations in inoculum levels. This allowed for reproducible growth measurement in large (20 μm diameter) wells, and screening for favorable growth conditions in small (5, 10 μm diameter) wells. We demonstrate the utility of this approach for screening and discovery using 5 μm wells to assemble P. aeruginosa colo- nies across a broad distribution of innoculum levels, and identify those conditions that pro- mote the highest probability of survivial and growth under spatial confinement. Multi- member community assembly was also characterized to demonstrate the broad potential of this platform for studying the role of member abundance on microbial competition, mutual- ism and community succession. Citation: Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, et al. (2016) Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PLoS ONE 11(5): e0155080. doi:10.1371/journal.pone.0155080 Citation: Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, et al. (2016) Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PLoS ONE 11(5): e0155080. doi:10.1371/journal.pone.0155080 Citation: Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, et al. (2016) Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PLoS ONE 11(5): e0155080. doi:10.1371/journal.pone.0155080 Editor: Xiangzhen Li, Chengdu Institute of Biology, CHINA Received: January 19, 2016 Accepted: April 24, 2016 Published: May 6, 2016 Copyright: © 2016 Hansen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. OPEN ACCESS Editor: Xiangzhen Li, Chengdu Institute of Biology, CHINA Editor: Xiangzhen Li, Chengdu Institute of Biology, CHINA Editor: Xiangzhen Li, Chengdu Institute of Biology, CHINA Received: January 19, 2016 Accepted: April 24, 2016 Published: May 6, 2016 Copyright: © 2016 Hansen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Copyright: © 2016 Hansen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Data Availability Statement: All relevant data are within the paper and its Supporting Information files. RESEARCH ARTICLE Despite these advances, much is unknown about how microbial community members develop with respect to their neighbors and within their respective physical and chemical land- scapes. This has inhibited our ability to assemble artificial communities of natural isolates or design synthetic communities of engineered organisms that exhibit the robustness and func- tional capacity of natural communities. These limitations are due, in large part, to our inability to systematically screen the vast parameter space of factors that influence ecological succession and function [15]. Member abundance, confinement, niche connectivity, and nutrient exchange are just a few of the factors that can influence such processes [16]. Discovery necessi- tates the development of screening tools that can rapidly and systematically explore this space in order to identify those conditions and combinations of community members that promote or inhibit heterogeneous growth, coordinate function and drive emergent behavior. Despite these advances, much is unknown about how microbial community members develop with respect to their neighbors and within their respective physical and chemical land- scapes. This has inhibited our ability to assemble artificial communities of natural isolates or design synthetic communities of engineered organisms that exhibit the robustness and func- tional capacity of natural communities. These limitations are due, in large part, to our inability to systematically screen the vast parameter space of factors that influence ecological succession and function [15]. Member abundance, confinement, niche connectivity, and nutrient exchange are just a few of the factors that can influence such processes [16]. Discovery necessi- tates the development of screening tools that can rapidly and systematically explore this space in order to identify those conditions and combinations of community members that promote or inhibit heterogeneous growth, coordinate function and drive emergent behavior. Toward these goals, several platforms have been developed that utilize micro- and nano-fab- rication techniques to enable the study of uncultivable bacterial species, the study of competi- tion or synergy in small bacterial communities [17], and studies of the effects of spatial structure and chemical environment on colonization [11,18]. Several approaches have been taken that confine small numbers or single microbial cells in small volumes, enabling these individual microbes or small colonies to be observed microscopically. Microfluidic droplet gen- erators that encapsulate bacteria are a common approach [19–24]. Also used are arrays of microwells [25], like the million-well growth chip designed by Ingham et al. that was applied for use as a high-throughput screening tool [26]. Introduction Microbial communities impact our lives in dramatic ways. Taking on the role of both friend and foe, these communities shape our environment and ecosystems, fuel business and agricul- ture, and simultaneously support and perplex our healthcare system. Most communities are as dynamic as they are diverse, continuously adapting in their composition, organization and function to survive and thrive in changing environmental landscapes. 1 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement Within the community, microbes exchange materials, energy and information via metabolite transfer, diffusive chemical signaling (e.g. quorum sensing) and contact-mediated interactions (e.g. protein secretion) [1–3]. As a result, complex behaviors such as robustness (e.g. antibiotic resistance), efficient resource utilization, mutualism and enhanced biosynthetic capacity emerge. Community development is dramatically influenced by the chemical and physical landscape of the local environment [4]. Systems such as soil, packed bed reactors and medical device surfaces contain spatially-confined micro-environments or niches, where the path length for diffusive chemical signaling is significantly altered and where micro and nanoscale topology influence surface attachment events that impact community structure and function [5,6]. authors would also like to thank the J. Mougous Laboratory (University of Washington, Seattle, WA) for the supply of P. aeruginosa strains used in these studies and Dr. B. Tseng Laboratory (University of Washington, Seattle, WA) for the supply of plasmids used to express GFP and mCherry in E. coli. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. Conventional physiological assays of single species and multi-member cultures, carried out in large fluid volumes or over solid media, fail to address the impact of spatial organization and environmental heterogeneity on community development and function. Recent advancements in the capacity to characterize communities with improved spatial and temporal resolution have fueled a growing appreciation of the role that composition and physical architecture play on community dynamics. Advances in omics and sequencing technologies have been com- bined with the ability to image communities at the cellular and subcellular scales to provide a systems-level understanding of natural community function and adaptation [7]. Concurrently, a growing capacity to manipulate material and chemical environments across length scales, using micro and nanofabrication, has enabled studies that uncover the impact of hierarchical and heterogeneous structure on early-stages of community development and function [8]. For example, manipulation of surface architecture and spatial confinement at the length scale of single cells has been used to dramatically alter early colonization and self-regulated quorum signaling [9,10]. At the community level, studies into the role of confinement and microscale chemical heterogeneity has provided new insights into competition, cooperation, antibiotic resistance and succession [11–14]. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Design and fabrication of microwell arrays Two different microwell array layouts were used in these studies. The first layout contained six separate arrays containing wells with diameters of 10, 20, 40, 80, 160, and 1000 μm. The second layout contained four arrays of wells with diameters of 2, 5, 10, and 20 μm. For fabrication, 4-in. silicon wafers (Silicon Quest) were coated with 1μm thick parylene films in a parylene coater (SCS Labcoter 2, Specialty Coating Systems) using 2,2-paracyclophane (Sigma) as the parylene precursor. Wafers were then spin coated with Shin-Etsu Microprime P20 adhesion promoter (3000 rpm, 45 s), then SPR-220 photoresist (Microchem Corp.) to a 1 μm thickness (3000 rpm, 45 s). Wafers were soft baked (115°C, 45 s), exposed for 8 s using a contact mask aligner, hard baked (115°C, 45 s), developed in CD-26 developer (1 min), rinsed in H2O and dried with N2. Exposed regions of parylene were then etched with O2 plasma in an Oxford Plasmalab 100 reactive ion etching system at a parylene etch rate of 60 nm/min. Protein trans- fer through etched parylene regions was verified by absorbing BSA over the parylene stencils and then performing the dry lift-off, resulting in the formation of homogenous protein layers 5–6 nm in thickness, roughly twice the expected thickness of a BSA monolayer (S1A Fig) [30]. Transfer of bacterial cells through the stencils was also verified using the same procedure (S1B Fig). After O2 plasma etching, deep reactive ion etching using a Bosch process was used to form microwells in the exposed silicon. A Si etch rate of 1.1 μm per cycle was measured, and 18 cycles of the Bosch etch process were performed to obtain a nominal well depth of 20 μm, as verified with a stylus profilometer. Wells were finally etched with O2 plasma for 2 min to remove residual photoresist, rendering the surface rich in SiO2 groups. Substrates were diced into 15×15 mm coupons and stored in ambient conditions until use. Another interesting approach utilizes a ‘cell docking’ method that delivers microbes to arrays of different diameter wells, using microfluidic channels, potentially allowing different aspects of confinement to be analysed [25]. Here, we detail the development of a discovery platform that combines the high-throughput nature of the droplet technologies and the million-well growth chip mentioned above [26] with PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 2 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement the flexibility in size and environmental control afforded by microfabricated wells described by Park et al. [25] This multi-diameter microwell array is designed to screen unique microbial communities for growth across a large range of population and environmental parameters. We describe a microfabrication approach that uses a polymer dry lift-off method [27–29] to assem- ble microbial populations into silicon microwells with controlled surface chemistry and physi- cal features (Fig 1A and 1B). By varying the length scale of the well diameter (Fig 1C), we show that homogenous populations assemble into large (101–102 μm diameter) wells, while highly heterogeneous populations assemble into small (100–101 μm diameter) wells. Leveraging the high initial population dispersion driven by assembly into small wells, we screen unique Pseu- domonas aeruginosa colonies to identify conditions that are either conducive or inhibitive to growth in spatially-confined environments. Finally, seeding with a binary system was charac- terized to demonstrate the utility of this platform for pairing interacting cells together in a con- trolled or randomized fashion. These results demonstrate a new, high-throughput methodology for screening population and environmental parameters for microbial growth. Protein functionalization in microwell arrays Microwell arrays were functionalized with unlabeled WGA (Triticum vulgare) lectin (Sigma), WGA-A488 (Invitrogen) or BSA (Sigma). WGA coatings were used to promote cell adhesion and viability. Although E. coli was found to have high association with WGA in solution, WGA well coatings did not significantly alter the distribution of cell populations relative to non-specific (BSA) coatings, but did provide higher cell viability after attachment compared to wells with no coating. (S2 Fig). This was likely due to the fact that the lectin coated surfaces trapped moisture within the wells, causing less dehydration during the dry lift-off step. Other well pre-treatments designed to keep cells hydrated during the lift-off process, such as coating the wells with agar, PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 3 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 1. Microwell array fabrication and design. (A) Microwell fabrication process: (i,ii) Positive photoresist is patterned over parylene- coated silicon wafers using conventional photolithography. (iii) Dry etching is then used to etch parylene and then silicon to the desired well depth. (iv) The well surface is then modified with a protein layer then (v) a solution of bacterial cells. (vi) Parylene is removed from the substrate and (vii) the substrate is contacted with agar-coated coverslips loaded with the desired chemical media. (B) Dry lift-off procedure involving peel-off of the parylene mask (step vi). (C) Layout of a combinatorial microwell array substrate. doi:10.1371/journal.pone.0155080.g001 Fig 1. Microwell array fabrication and design. (A) Microwell fabrication process: (i,ii) Positive photoresist is patterned over parylene- coated silicon wafers using conventional photolithography. (iii) Dry etching is then used to etch parylene and then silicon to the desired well depth. (iv) The well surface is then modified with a protein layer then (v) a solution of bacterial cells. (vi) Parylene is removed from the substrate and (vii) the substrate is contacted with agar-coated coverslips loaded with the desired chemical media. (B) Dry lift-off procedure involving peel-off of the parylene mask (step vi). (C) Layout of a combinatorial microwell array substrate. doi:10.1371/journal.pone.0155080.g001 doi:10.1371/journal.pone.0155080.g001 have shown similar improvements in cell viability [31]. Additionally, lectin-coated wells may bias the capture of highly motile, viable cells through adhesive exopolysaccharride binding inter- actions. For well functionalization, 100 μL of WGA, WGA-A488, or BSA at 500 μg/mL in 1X PBS was incubated on the microwell substrate for 60 min. in a humidity chamber. Bacterial Culture and Seeding E. coli K-12 expressing GFP and mCherry were used as model strains to study bacteria seeding behavior in the microwell array platform. These strains were constructed by chromosomal insertion of the genes encoding GFP or mCherry using a Tn7 site specific transposon system [32]. After construction, these strains were stored in glycerol stocks at -80°C. The fluorescent strains were cultured on LB agar plates (10 g NaCl, 5 g Yeast, 10 g BactoTryptone, 15 g agar per liter) containing 5 μg/mL Gentamicin (37°C, 24 hrs), then stored at 4°C for up to 1 month. For seeding experiments, E. coli was grown to the logarithmic phase in liquid LB media with 5 μg/mL Gentamicin in a sterile 20 mL glass tube (225 rpm, 37°C), harvested by centrifugation, and re-suspended to the desired concentration in water. Here re-suspension in water was preferable, as re-suspension in media resulted in the deposition of salt crystals that interfered with the microscopy. A 100 μL volume of this solution was pipetted onto the WGA-functionalized microwell arrays and incubated in humid conditions for 1 hr. The solu- tion was then aspirated from the substrate and allowed to dry. The parylene film was then removed using a small piece of Scotch™tape and tweezers (Fig 1B). These substrates were then imaged with epifluorescence using FITC or TRITC filter sets. Camera settings were adjusted such that individual E. coli cells expressing GFP or expressing mCherry gave the same average signal intensity. P. aeruginosa PA-01 expressing GFP was used for growth studies. The plasmid attTn7::GFP was used for GFP expression in native PA-01, this strain was constructed in the J. Mougous Laboratory (University of Washington, Seattle, WA) and stored in glycerol stocks at -80°C upon receipt. For solid culture, P. aeruginosa was grown on LB agar plates (30°C, 24 hrs) then stored at 4°C for up to 1 week. Prior to seeding, this strain was cultured to the log phase in liq- uid LB (30°C, 225 rpm), harvested and re-suspended to an OD600 of 0.25. Here, cells were re- suspended into fresh LB media to maintain cell viability during the seeding process. Cells were then incubated over BSA-coated microwell arrays for 1 hr. Substrates were then briefly rinsed in water for ~10 s, dried, and then the parylene was removed from the surface. Protein functionalization in microwell arrays Substrates were then washed three times with 1X PBS to remove unbound protein and dried with N2. 4 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement Growth studies of P. aeruginosa Agar-coated coverslips were used to trap bacteria cells while providing aqueous chemical media into the wells. For agar-coating, sterile 25×75 mm glass coverslips (Schott Nexterion) were placed in a 3.5 inch diameter polystryene petri dish setting on a hot plate at 50°C, and 10 mL of boiling liquid LB-agar was poured evenly over the coverslips. Excess LB-agar was then removed with a pipette, and the dish was cooled for 30 min at 4°C to gel the agar onto the cov- erslip with minimal dehydration. The resulting thickness of the hydrated agar layer was esti- mated to be approximately one hundred microns in thickness. The coverslip was removed from the dish with a razor blade and contacted with a seeded microwell substrate, then imme- diately placed in a humidified, live cell incubation chamber (In Vivo Scientific, St. Louis, MO) set on an inverted fluorescence microscope stage at 30°C. Growth was studied under these con- ditions using four replicate experiments. Fluorescence Microscopy A Nikon Eclipse Ti-U inverted microscope (10×, NA 0.3 or 20×, NA 0.4) equipped with an Optiscan motorized XYZ stage was used to image the microwell arrays. Fluorescent images were taken using a DS-QiMc monochrome digital camera, FITC and TRITC filter sets, and NS-Elements software. Prior to growth studies, imaging conditions were optimized such that no detectable photobleaching occurred. A neutral density filter was used to adjust the excita- tion source to 25% of the standard light intensity. Under this setting, no significant bleaching of the cells was observed when imaging with the 10× objective for repeated 100 ms exposures. Time-lapse images were taken of the arrays during growth with the 10× objective at the speci- fied camera settings (100 ms exposure, 16× gain, 1280×1024 binning). Arrays were imaged once every 30 to 60 minutes, and the resulting image sequences were used to generate growth curves. Instrumentation Scanning Electron Microscopy (SEM): A Carl Ziess Merlin SEM was used to characterize the structural features of the microwell arrays after etching and parylene removal. Images were acquired while operating at 3.0 kV. Samples were imaged with a 30° and 45° tilt to provide images of the well sidewalls. 5 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement Confocal Microscopy Three-dimensional images of P. aeruginosa grown to various levels in 10 μm diameter micro- wells were taken using a Zeiss LSM 710 laser-scanning confocal with Zen 2010 software. Z- stacks were taken using a 20X objective with a 2.5 μm step. Zen 2010 image analysis software was used to re-construct three-dimensional images of microbial cells in the microwells. Image Analysis Grey-scale images of fluorescent well intensities were quantitatively analyzed using ImageJ software. A microarray analysis plugin (http://rsb.info.nih.gov) was used to quantify fluores- cent intensity levels of bacterial cells isolated in wells. Here, each well was treated as an inde- pendent region of interest, and fluorescent intensity was averaged across the entire area of the well. Standard deviations were then calculated from average signals across replicate wells. Due to uneven background fluorescence from the agar coating, local background levels were also taken immediately next to individual wells. The local background was then subtracted from the average fluorescence intensity of the well. For the seeding and growth studies involving E.coli expressing GFP, fluorescent signal intensity was also measured across a population of cells, allowing for the determination of average fluorescent signal per cell. This allowed for estima- tion of the number of cells per well from average well fluorescent signal intensities. For growth studies involving P. aeruginosa expressing GFP, cell volumes were determined from confocal microscope Z-stack images exported from Zen 2010 software using a volume reconstruction plugin and then correlated to the fluorescent signals measured on the epi-fluorescent micro- scope system (S3 Fig). Statistical Analysis of Data All data is reported as the average ± standard deviation. The variation in cell seeding levels was described by CVwell: CVwell ¼ StDevD ðA:U:Þ Fl Ave;DðA:U:Þ ð1Þ ð1Þ where FlAve,D is the averaged fluorescent well intensity after local background subtraction across replicate wells of diameter D, and StDevD is the corresponding standard deviation of replicate wells within an array. 6 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement Characterization of the Physicochemical Microwell Environment Characterization of the Physicochemical Microwell Environment The microwell fabrication process was designed to allow for systematic control of both the phys- ical structures and chemical surface features of the well interface. The well features were physi- cally and chemically characterized prior to bacterial seeding. SEM images of low and high- aspect ratio wells demonstrate the capability to tune the level of spatial confinement into which the bacterial communities are assembled (Fig 2A and 2B). Wells contain walls with a periodic ribbed structure and a smooth floor, characteristic of the Bosch etching process (Fig 2A insert). Well surfaces can also be modified with desired organic or biological components using liquid or vapor deposition over the entire stencil (Fig 1A, step iv). During this functionalization step, the silicon well surface is rich in Si-OH groups, making it amenable to direct contact with aque- ous-phase solutions and reactive to organic silane-reagents. To demonstrate modification of the well surface, a solution of fluorescently labeled, adhesive lectin protein (wheat germ agglutinin- AlexaFluor 488, WGA-A488) was incubated over the entire substrate. After washing and removal of the parylene mask, fluorescent images show the protein exclusively coated within the Fig 2. Characterization of the physicochemical features of microwell arrays. (A) SEM image of an array of 2μm diameter microwells and of an individual well after substrate cleavage (inset). (B) SEM images of a 20μm diameter microwell array. (C) Fluorescent image of microwells after functionalization with WGA-A488 and dry lift-off. The arrow highlights a portion of un-peeled parylene, also containing adsorbed WGA-A488. (D) Fluorescent line plot of WGA-A488 coated wells corresponding to the red line in 2C. doi:10 1371/journal pone 0155080 g002 Fig 2. Characterization of the physicochemical features of microwell arrays. (A) SEM image of an array of 2μm diameter microwells and of an individual well after substrate cleavage (inset). (B) SEM images of a 20μm diameter microwell array. (C) Fluorescent image of microwells after functionalization with WGA-A488 and dry lift-off. The arrow highlights a portion of un-peeled parylene, also containing adsorbed WGA-A488. (D) Fluorescent line plot of WGA-A488 coated wells corresponding to the red line in 2C. doi:10.1371/journal.pone.0155080.g002 doi:10.1371/journal.pone.0155080.g002 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 7 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement well surface, with higher intensity levels noted at the well edges due to the three-dimensional wall structure (Fig 2C and 2D). Seeding Behavior of Bacterial Cells Into the Microwell Array Control of the physical and chemical features of the microwell interface can be used to bias the bacterial populations isolated during the seeding step. It is well known that the attachment of bacterial cells to a solid interface depends on topological and chemical surface features, and numerous reports have used micro and nanofabrication strategies to control these properties, either to promote or inhibit bacteria attachment and interactions [34–36]. Here, substrates containing arrays of wells with diameters ranging from 5 to 1000 μm were used to investigate the effect of diameter on the population distribution of seeded Escherichia coli cells expressing green fluorescent protein (GFP). False color fluorescent images generated from cells isolated in wells after seeding and lift-off reflect the cell densities in the wells (Fig 3A). As evident, cells are seeded exclusively within the well boundaries. Magnified images of representative 4×4 arrays qualitatively demonstrate that arrays of smaller wells contain increasingly heterogeneous num- bers of cells within initial populations. To quantify the trends shown in Fig 3A, the average fluorescence intensity and the variation in signal between replicate wells within the same array (CVarray) were measured for each diam- eter (Fig 3B). Here, average well intensity reflects the average number of cells contained within an array, while CVarray reflects the variation in initial cell populations present in wells across an array. Populations assembled within larger wells (80 μm diameter) allowed for reproducible cell populations (CVarray  0.2) to distribute in the well, likely due to minimal crowding or interference from the sidewalls. As well diameters decreased below 80 μm, the average fluores- cent signal also decreased, despite larger surface-area to volume ratios for cell attachment. This can be attributed to higher levels of spatial confinement, rendering a higher fraction of well binding sites inaccessible to cells. Also, stochastic interactions between single cells and wells become more pronounced at smaller diameters, causing larger CVarray values. Similar trends have been noted while seeding mammalian cells into microscale wells [37], and also while encapsulating molecular systems into nanoscale compartments, such as DNA probe functiona- lization in nanowells for digital PCR systems [38]. To further characterize the population dis- tribution in seeded wells, E. coli-GFP was seeded into 5 μm diameter wells over a two order of magnitude concentration range (OD600 = 0.01 to 1.0, Fig 4A). Characterization of the Physicochemical Microwell Environment The variation in protein density between wells within an array was 16%. This level of variation is likely due to protein aggregation that occurs across the well surface, and is comparable to the variation previously noted using microcontact printing meth- ods (11–13%) [33]. Further improvements in protein uniformity can likely be obtained using printing buffers that minimize aggregation [27]. Background regions appear unmodified, which was expected as proteins do not diffuse through the parylene layer. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Seeding Behavior of Bacterial Cells Into the Microwell Array The corresponding frequency histograms (Fig 4B) indicate that initial well populations follow a Poisson distribution, suggest- ing that seeding occurs as independent, random events with frequencies proportional to the concentration of cells present in bulk solution. To mathematically describe the relation between seeding concentration and cell distribution within these wells, the data was fit accord- ing to the probability distribution function: PðxÞ¼A λx x! eλ; x¼0;1;. . .;n ð2Þ ð2Þ where x represents the number of occurrences (cells captured per well), A is an amplitude parameter, λ represents the mean value, n represents the total number of cells present, and P (x) represents the probability of capturing x number of cells in a well. 8 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 3. The distribution of bacteria seeded in microwell arrays is guided by well diameter. (A) Mosaic 10X false-color fluorescent image of a combinatorial microwell array after seeding E. coli-GFP at OD600 = 0.3 and dry lift-off to remove background cells. The false color scale denotes fluorescent signal intensities indicative of cell densities. (B) Averaged well fluorescence intensities ± standard deviation measured from individual wells within each array (black line) and CVarray (red dashed line), the standard deviation divided by the average fluorescent signal for each well diameter. doi:10 1371/journal pone 0155080 g003 Fig 3. The distribution of bacteria seeded in microwell arrays is guided by well diameter. (A) Mosaic 10X false-color fluorescent image of a combinatorial microwell array after seeding E. coli-GFP at OD600 = 0.3 and dry lift-off to remove background cells. The false color scale denotes fluorescent signal intensities indicative of cell densities. (B) Averaged well fluorescence intensities ± standard deviation measured from individual wells within each array (black line) and CVarray (red dashed line), the standard deviation divided by the average fluorescent signal for each well diameter. Fig 3. The distribution of bacteria seeded in microwell arrays is guided by well diameter. (A) Mosaic 10X false-color fluorescent image of a combinatorial microwell array after seeding E. coli-GFP at OD600 = 0.3 and dry lift-off to remove background cells. The false color scale denotes fluorescent signal intensities indicative of cell densities. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Seeding Behavior of Bacterial Cells Into the Microwell Array (A) 20X false color fluorescent images of 5 μm diameter wells seeded with E.coli-GFP at OD600 = 0.01, 0.1, and 1.0. (B) Probability distributions for cell populations at the varied seeding concentrations. Diamonds represent data and solid lines represent a Poisson distribution fit to the data according to eq 2. Seeding at an OD600 of 0.01, 0.1, and 1.0 resulted in a λ value of 1.9, 6.2, and 68.6, respectively, and an A value of 1.65, 1.35, and 1.00, respectively. doi:10.1371/journal.pone.0155080.g004 doi:10.1371/journal.pone.0155080.g004 Poisson-like distributions of microbes that result during the seeding process may be used to screen for microbe biases or affinities for, or against, particular surfaces or other microbes. Seeding Behavior of Bacterial Cells Into the Microwell Array (B) Averaged well fluorescence intensities ± standard deviation measured from individual wells within each array (black line) and CVarray (red dashed line), the standard deviation divided by the average fluorescent signal for each well diameter. doi:10.1371/journal.pone.0155080.g003 doi:10.1371/journal.pone.0155080.g003 These findings suggest that well dimensions can be used in combination with cell seeding concentration to tune the distribution of initial microbial populations isolated within an array. Control of this distribution is attractive, because it enables parallel monitoring of either a homogenous or heterogeneous assortment of initial populations; both are situations that are informative for characterizing microbial community development. Further optimization of the seeding protocol will allow for improved control of well populations. Currently, spatial correla- tions can often be identified when inspecting arrays spanning larger areas (~2 mm2), likely caused by drying artifacts that occurred on the surface before the lift-off step. However, analy- sis of a large number of wells minimizes this effect. Finally, while the characterizations were made here with a model E. coli–GFP system, seeding other species may result in changes to population distributions, driven by differences in microbial traits (e.g. motility, extracellular matrix composition, cell-surface and cell-cell affinities). However, it can be expected that simi- lar transitions to highly heterogeneous population assembly will occur for any species as the size of the well approaches the scale of individual cells. Moreover, quantifying deviations from PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 9 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 4. Bacterial well populations follow a Poisson distribution. (A) 20X false color fluorescent images of 5 μm diameter wells seeded with E.coli-GFP at OD600 = 0.01, 0.1, and 1.0. (B) Probability distributions for cell populations at the varied seeding concentrations. Diamonds represent data and solid lines represent a Poisson distribution fit to the data according to eq 2. Seeding at an OD600 of 0.01, 0.1, and 1.0 resulted in a λ value of 1.9, 6.2, and 68.6, respectively, and an A value of 1.65, 1.35, and 1.00, respectively. doi:10.1371/journal.pone.0155080.g004 Fig 4. Bacterial well populations follow a Poisson distribution. (A) 20X false color fluorescent images of 5 μm diameter wells seeded with E.coli-GFP at OD600 = 0.01, 0.1, and 1.0. (B) Probability distributions for cell l ti t th i d di t ti Di d t d t d lid li t Fig 4. Bacterial well populations follow a Poisson distribution. Trapping and Growth of P. aeruginosa in Microwell Arrays This metric was determined using a correlation curve relating the average well fluorescence intensity (A.U.), obtained from the epi-fluorescence microscope system, to cell volume, quantified with a confocal microscope (S3 Fig). At the initial time point, broader distributions of P. aeruginosa populations were noted in wells with smaller diameters (CV5μm well = 0.68 ± 0.08; CV20μm well = 0.28 ± 0.04, n = 4), consis- tent with the trends noted previously (Fig 3B). The fluorescent signals measured from wells during incubation indicated that growth occurred over a 10 hr period. Cells in 20 μm diameter wells had a 4 hr lag phase followed by 4 hr growth period until the cell volume reached the final volume of the well (Fig 5A, S3 Video). A small over-estimation in cell volume, indicated by cell volume fractions slightly higher than 1.0, was noted at late growth times, and was likely caused by increases in cell density as cells fill the entire well volume. Similar effects have been noted while monitoring P. aeruginosa growth in other confined systems [14]. After growth, fluores- cence intensity remained stable for at least 40 hr. Upon inspection of these wells under fluores- cence, bright cellular aggregates appeared to be present, but no cellular motility could be detected within the cell mass. An example of 20 μm diameter wells after growth is shown in real-time playback (S4 Video). The lack of cellular motility here is in stark contrast to that seen immediately after seeding (S1 and S2 Videos), where high cellular-motility is easily observed. This suggests the possible establishment of biofilms within the wells during the growth period. Also apparent is the presence of an outlier well, which occurred in the 20 μm diameter arrays with a frequency of 5–10% (n = 4). However, the relatively low variation in initial cell popula- tions assembled under these seeding conditions allowed for directed, repeatable growth trajec- tories, which enables averages of trajectories to be determined. This demonstrates the utility of this platform as a ‘high-statistics’ method for monitoring growth kinetics of replicate, micro- scale bacterial populations in controlled microenvironments. Cells in 5 and 10 μm diameter microwell arrays showed strikingly different growth behavior. Trapping and Growth of P. aeruginosa in Microwell Arrays After seeding, the chemical environment within the wells was controlled by sealing the micro- well substrate with an agar-coated coverslip that had been treated with the desired chemical media (Fig 1A, step vii). This provided a physical barrier to trap motile cells within the well structures. The successful trapping of motile bacterial populations was demonstrated using P. aeruginosa modified to express GFP, which showed both surface-attached and un-attached populations confined within the wells during real-time monitoring (S1 Video). The motility observed from un-attached cells suggested that a large fraction of cells remained viable through the seeding and trapping process. Similar observations were made while monitoring bacterial cell populations confined in smaller well volumes (S2 Video). After trapping, a small number of cells were also found in background regions, which was caused by cell removal from wells during contact of the seeded substrate with the agar cover- slip. Background cells appeared to be trapped between the agar and the silicon interface and typically showed no motility over time. While these cells also have the potential for growth [39], they are few relative to the number that remain trapped within the well volume and usu- ally cause no interference with the test sites. Due to the static nature of media in the wells the PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 10 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement after trapping step, it is expected that mass transfer across the arrays will be diffusion-limited. However, uniform concentration of oxygen and nutrients across the arrays is expected due to the small array area (200 x 200 μm). For example, the diffusivity of oxygen in a 1.5% (w/v) agar gel at 30°C is DO2,agar = 2.70 x 10−5 cm2/s [40], and the characteristic time-scale for diffusion across the length of this array is ~10 s, well below the time scale required for growth (hours). After well sealing with agar-coated coverslips, P. aeruginosa was monitored for growth in wells with diameters between 5 and 20 μm, where the initial population distribution (CVwell) was shown to be highly dependent on well diameter (Fig 3B). Here, Luria-Bertani (LB) media was added in the agar coverslip coating to promote growth. Growth was observed by monitor- ing well arrays with time-lapse fluorescence microscopy and then quantified in terms of cell volume fraction, the measured cell volume normalized to the overall volume of the well. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Trapping and Growth of P. aeruginosa in Microwell Arrays In 5 μm diameter wells, a wide variety of trajectories were measured (Fig 5B, S5 Video), ranging from an increase in signal intensity due to growth (< 4 hr to stationary phase), to population decay and extinction, indi- cated by a decaying fluorescence signal. The decay in fluorescent signal is due to cell lysis and extracellular GFP diffusion, which was previously shown using 60X time-lapse fluorescent microscopy to monitor individual cells during lysis [41]. Similar behavior was also noted in 10 μm diameter wells, and replicate experiments consistently showed this behavior to persist within smaller (5, 10 μm diameter) wells, whereas 20 μm diameter wells provided reproducible growth outcomes (S4 Fig). We hypothesized that the variation in growth response in the 5 and 10 μm diameter wells could be attributed to the broader distributions of initial populations seeded into the wells. To investigate this further, we compared the initial and final (t = 24 hrs incubation) cell volumes from 5 and 10 μm wells (n = 4 experiments), generating hundreds of independent growth trials (Fig 6A and 6B). Additionally, the probability of well colonization, defined as the percentage of PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 11 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 5. P. aeruginosa growth trajectories in 5 and 20 μm diameter microwell arrays. (A) Top: False-color fluorescent images of growth in 20 μm diameter arrays. Bottom: Corresponding growth trajectories. The dashed red trajectory indicates growth in an outlier well. (B) Top: False-color fluorescent images of growth in 5 μm diameter arrays. Solid black trajectories denote wells where growth and colonization occurred, dashed red trajectories denote wells where decay and extinction occurred. Data is representative of 4 independent growth experiments. Fig 5. P. aeruginosa growth trajectories in 5 and 20 μm diameter microwell arrays. (A) Top: False-color fluorescent images of growth in 20 μm diameter arrays. Bottom: Corresponding growth trajectories. The dashed red trajectory indicates growth in an outlier well. (B) Top: False-color fluorescent images of growth in 5 μm diameter arrays. Solid black trajectories denote wells where growth and colonization occurred, dashed red trajectories denote wells where decay and extinction occurred. Data is representative of 4 independent growth experiments. doi:10.1371/journal.pone.0155080.g005 doi:10.1371/journal.pone.0155080.g005 wells showing a significant increase in cell volume after incubation, was computed (Fig 6C and 6D). As evident, the probability for colonization was highly dependent on initial conditions. Trapping and Growth of P. aeruginosa in Microwell Arrays In the case of the 10 μm diameter wells, colonization was possible when wells were inoculated up to a volume fraction of 0.3. Within this region, an inoculation range where the probability of colonization was the highest appears at cell volume fractions between 0.1 and 0.15. Comparable trends were found within the 5 μm wells, where the probability of colonization was highest at cell volume fractions between 0.01 and 0.1 and diminished between 0.1 and 0.3. In both cases, colonization did not occur when initial well volumes were greater than 0.3. It is likely that decay occurs at this inoculum level due to over-consumption of resources during the early stages of growth, since nutrient exchange is limited in the confined environments. Although additional analysis is required to test this hypothesis, these findings point towards the impor- tance of spatial confinement in community development. In addition, these results demon- strate the first successful application of this platform to screen hundreds of unique, independent bacterial populations, driven by highly heterogeneous population assembly in small wells, for the discovery of populations and environmental conditions that influence col- ony growth. doi:10.1371/journal.pone.0155080.g005 Assembly of Multi-Component Bacterial Communities In addition to single-species colonies, dynamic interactions within multi-species populations can be investigated using this platform. Microbial communities are often shaped by PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 12 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 6. Growth of P. aeruginosa in confined volumes depends on inoculum levels. (A) Scatter plots of initial and final (t = 24 hrs) cell volume fraction in 10 μm diameter wells and (B) 5 μm diameter wells. Growth-decay line deciphers wells that increased or decreased in cell numbers over the incubation period. (C) Probability of well colonization with initial volume fraction of seeded cells for in 10 μm diameter and (D) 5 μm diameter wells. Data was taken from n = 256 wells for 10 μm diameter arrays and n = 840 wells for 5 μm diameter arrays from 4 independent growth experiments. Fig 6. Growth of P. aeruginosa in confined volumes depends on inoculum levels. (A) Scatter plots of initial and final (t = 24 hrs) cell volume fraction in 10 μm diameter wells and (B) 5 μm diameter wells. Growth-decay line deciphers wells that increased or decreased in cell numbers over the incubation period. (C) Probability of well colonization with initial volume fraction of seeded cells for in 10 μm diameter and (D) 5 μm diameter wells. Data was taken from n = 256 wells for 10 μm diameter arrays and n = 840 wells for 5 μm diameter arrays from 4 independent growth experiments. doi:10.1371/journal.pone.0155080.g006 doi:10.1371/journal.pone.0155080.g006 cooperative, competitive, or pathogenic interactions between different species, and recently several pair-wise interactions have been shown to be critical in driving community phenotype [42]. However, the vast majority of interactions occurring within poly-microbial communities are unknown, but likely depend on the relative abundance of interacting members present [16]. The high-throughput nature inherent to this method makes it attractive for characterizing inter-species interactions after assembling either homogenous or heterogeneous populations, similar to the single-species systems previously described. Here, the assembly of a model, two-component E. coli system constitutively expressing mCherry or GFP into large (40 μm diameter) wells promoting homogenous population assem- bly, or small (2 μm diameter) wells promoting heterogeneous population assembly was exam- ined. In large wells, assembled E. coli-mCherry and GFP populations had a reproducible mCherry (red) to GFP (green) signal ratio of 0.39 ± 0.09 (Fig 7A), reflective of the ratio at PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 13 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement Fig 7. Multi-member bacterial communities can be assembled at low or high dispersion. (A) Low dispersion pairing: Seeding a 1:9 mixture of E. coli-mCherry (red) and E. coli-GFP (green) at an overall OD600 of 0.4 into 40 μm diameter microwell arrays. (B) High dispersion pairing: Seeding a 1:1 mixture of E. coli-mCherry and E. coli-GFP into 2 μm diameter arrays at an overall OD600 of 1.0. (C) Scatter plot of GFP and mCherry signals after low or high dispersion pairing. doi:10 1371/journal pone 0155080 g007 Fig 7. Multi-member bacterial communities can be assembled at low or high dispersion. (A) Low dispersion pairing: Seeding a 1:9 mixture of E. coli-mCherry (red) and E. coli-GFP (green) at an overall OD600 of 0.4 into 40 μm diameter microwell arrays. (B) High dispersion pairing: Seeding a 1:1 mixture of E. coli-mCherry and E. coli-GFP into 2 μm diameter arrays at an overall OD600 of 1.0. (C) Scatter plot of GFP and mCherry signals after low or high dispersion pairing. doi:10.1371/journal.pone.0155080.g007 doi:10.1371/journal.pone.0155080.g007 which the pair was mixed together in solution, demonstrating pairing at low dispersity. In stark contrast, these cells were paired with high dispersity in small wells, providing a highly heteroge- neous distribution of initial populations, as noted by a variety of unique GFP and mCherry sig- natures (Fig 7B). A scatter plot of GFP-mCherry signal intensities generated from individual wells in each case contrasts the differences between initial population dispersions (Fig 7C). This finding demonstrates the potential use of this platform to measure growth and interac- tions between replicate, multi-member populations, or to screen unique combinations of inter- acting pairs in a manner similar to the single-component systems previously described. This unlocks a new, transformative approach for studying fitness, competition, mutualism, or path- ogenicity across a vast parameter space using a single substrate. Bacterial Community Assembly in Microwells Reveals Role of Confinement measurements across a large number of independent populations using a simple, quantitative fluorescence readout. The ability to tune the initial population dispersity using microwell diameter and depth is attractive because it allows for the study of community behavior under different environmental and initial conditions. Seeding in wells with diameters significantly greater than the size of indi- vidual cells drives homogenous population assembly (CVwell  0.20), enabling a ‘high-statistics’ approach to monitoring the growth or decay of replicate populations. Conversely, seeding into wells with diameters that approach the size scale of individual bacterium drives heterogeneous population assembly, enabling one to screen a large parameter space in order to identify cellu- lar combinations and environments that are conducive or inhibitory to community growth and proliferation under prescribed conditions. Future work is aimed at screening interactions using high-dispersion population assembly with multi-species microbial communities in order to uncover symbiotic, mutualistic, and pathogenic relationships. Supporting Information S1 Fig. AFM characterization of protein and bacterial cell patterning on silicon substrates using the parylene dry lift-off process. (A) AFM image of BSA patterned into 20 μm diameter spots and (B) AFM image of E.coli cells patterned as 5 μm wide parallel lines. (TIF) S2 Fig. Characterization of E.coli seeding using WGA-coated microwells. (A) 20X fluores- cent-brightfield images of native E.coli after staining with WGA-A488 in the absence (top) or presence (bottom) of the complementary oligosaccharide (50 mM GlcNAc), verifying the bind- ing specificity of WGA to GlcNAc expressed in the extracellular matrix of E.coli. (B) Compari- son of population distributions of E.coli expressing GFP after seeding into 5 μm diameter microwells coated with WGA or BSA. (C) Fraction of dead cells within wells after staining with a live/dead assay. S3 Fig. Correlation between well fluorescent signals measured with the epi-fluorescent microscope system under standard settings (10X objective, 100 ms exposure, 16× gain, 1280×1024 binning) and cell volume measurements taken with a confocal microscope for P. aeruginosa expressing GFP. (A) False-color fluorescent images from the epi-fluorescent system (top row), and corresponding confocal microscope images (middle and bottom row) after cell growth to different levels in 10 μm diameter wells. Dashed white lines denote well boundaries. (B) Resulting correlation curve relating fluorescent intensity values (A.U.) to cell volume fraction. Cell volume fraction was taken to be the total volume of cells within a well divided by the overall volume of the well. (TIF) S4 Fig. False color fluorescent images of P. aeruginosa growth after seeding. (Initial) and incubation (final, t = 24 hrs) at 30°C in arrays containing wells of diameters 5, 10, and 20 μm. (TIF) S1 Video. P. aeruginosa populations trapped in 160 μm and 80 μm diameter microwells. Populations were seeded in wells then trapped with an agar-coated coverslip and monitored with epifluorescence using a 10X objective. The movie is shown in real-time playback. (MOV) S1 Video. P. aeruginosa populations trapped in 160 μm and 80 μm diameter microwells. Populations were seeded in wells then trapped with an agar-coated coverslip and monitored with epifluorescence using a 10X objective. The movie is shown in real-time playback. (MOV) S2 Video. P. aeruginosa populations trapped in an array of 40 μm diameter microwells after seeding and trapping with an agar-coated coverslip. The movie was recorded at 10X S4 Fig. False color fluorescent images of P. aeruginosa growth after seeding. (Initial) and incubation (final, t = 24 hrs) at 30°C in arrays containing wells of diameters 5, 10, and 20 μm. (TIF) S1 Video. P. aeruginosa populations trapped in 160 μm and 80 μm diameter microwells. Populations were seeded in wells then trapped with an agar-coated coverslip and monitored with epifluorescence using a 10X objective. The movie is shown in real-time playback. (MOV) Conclusions A high-throughput platform for measuring the growth of independent microbial populations in three-dimensional, microscale landscapes with controlled physical and chemical features facilitates exploring the complex parameter space that influences microbial community devel- opment. Central to this methodology is the ability to isolate microbial cells precisely into wells using a parylene-based lift-off technique, combined with the capability of assembling initial populations with tunable dispersity by controlling the geometric features of the wells. We have demonstrated that seeded populations of bacteria can be trapped in three-dimensional micro- wells under appropriate environmental conditions, allowing for dynamic growth or decay PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 14 / 18 Acknowledgments This work was supported in part by the Genomic Science Program, U.S. Department of Energy, Office of Science, Biological and Environmental Research, as part of the Plant Microbe Inter- faces Scientific Focus Area (http://pmi.ornl.gov) as well as ORNL Laboratory Directed Research and Development. Microwell arrays were fabricated and characterized at the Center for Nanophase Materials Sciences User Facilities Division, Office of Basic Energy Sciences, U.S. Department of Energy. The authors would also like to thank the J. Mougous Laboratory (Uni- versity of Washington, Seattle, WA) for the supply of P. aeruginosa strains used in these studies and Dr. B. Tseng Laboratory (University of Washington, Seattle, WA) for the supply of plas- mids used to express GFP and mCherry in E. coli. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Author Contributions Conceived and designed the experiments: RH SR MD MS AT. Performed the experiments: RH CT AB AT. Analyzed the data: RH SR. Contributed reagents/materials/analysis tools: AB JMF DP. Wrote the paper: RH AT SR JMF. S2 Video. P. aeruginosa populations trapped in an array of 40 μm diameter microwells after seeding and trapping with an agar-coated coverslip. The movie was recorded at 10X PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 15 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement with epifluorescence and is shown in real-time playback. (MOV) S3 Video. False-color fluorescent time-lapse image showing P. aeruginosa colony growth during incubation in 20 μm diameter microwells at 30°C. The movie was recorded over 10 hours with a 1 hr time interval. (MOV) S4 Video. False-color fluorescent image showing P. aeruginosa colonies in 20 m diameter wells after 24 hrs of growth. The movie is shown in real-time playback and was recorded under the same camera settings as in S3 Video but with reduced gain to avoid saturation of the fluorescent signal in the wells due to the higher cell densities. (AVI) S5 Video. False-color fluorescent time-lapse image showing growth or decay of P. aerugi- nosa colonies in 5 μm diameter microwells during incubation at 30°C. The movie was recorded using the same settings as S3 Video. (MOV) S4 Video. False-color fluorescent image showing P. aeruginosa colonies in 20 m diameter wells after 24 hrs of growth. The movie is shown in real-time playback and was recorded under the same camera settings as in S3 Video but with reduced gain to avoid saturation of the fluorescent signal in the wells due to the higher cell densities. (AVI) PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 References doi: 10.1126/science.1251821 PMID: 25342809 9. Friedlander RS, Vlamakis H, Kim P (2013) Bacterial flagella explore microscale hummocks and hollows to increase adhesion. Proc Natl Acad Sci USA 110: 5624–5629. doi: 10.1073/pnas.1219662110 PMID: 23509269 10. Boedicker JQ, Vincent ME, Ismagilov RF (2009) Microfluidic confinement of single cells of bacteria in small volumes initiates high-density behavior of quorum sensing and growth and reveals its variability. Angew Chem Int Ed Engl 48: 5908–5911. doi: 10.1002/anie.200901550 PMID: 19565587 11. Keymer JE, Galajda P, Muldoon C, Park S, Austin RH (2006) Bacterial metapopulations in nanofabri- cated landscapes. Proc Natl Acad Sci USA 103: 17290–17295. doi: 10.1073/pnas.0607971103 PMID: 17090676 12. Austin RH, Tung C-K, Lambert G, Liao D, Gong X (2010) An introduction to micro-ecology patches. Chem Soc Rev 39: 1049–1059. doi: 10.1039/b911230h PMID: 20179824 13. Zhang Q, Lambert G, Liao D, Kim H, Robin K, Tung C-K, et al. (2011) Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments. Science 333: 1764–1767. PMID: 21940899 14. Connell JL, Ritschdorff ET, Whiteley M, Shear JB (2013) 3D printing of microscopic bacterial communi- ties. Proc Natl Acad Sci USA 110: 18380–18385. doi: 10.1073/pnas.1309729110 PMID: 24101503 15. Zhou J, Deng Y, Zhang P, Xue K, Liang Y, Van Nostrand JD, et al. (2014) Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci USA 111: E836–E845. doi: 10.1073/pnas.1324044111 PMID: 24550501 16. Little AEF, Robinson CJ, Peterson SB, Raffa KF, Handelsman J (2008) Rules of engagement: interspe- cies interactions that regulate microbial communities. Annu Rev Microbiol 62: 375–401. doi: 10.1146/ annurev.micro.030608.101423 PMID: 18544040 17. Park J, Kerner A, Burns MA, Lin XN (2011) Microdroplet-enabled highly parallel co-cultivation of micro- bial communities. PLOS ONE 6: e17019. doi: 10.1371/journal.pone.0017019 PMID: 21364881 18. Kim HJ, Boedicker JQ, Choi JW, Ismagilov RF (2008) Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc Natl Acad Sci USA 105: 18188–18193. doi: 10.1073/pnas. 0807935105 PMID: 19011107 19. Zhang Y, Ho Y-P, Chiu Y-L, Chan HF, Chlebina B, Schuhmann T, et al. (2013) A programmable micro- environment for cellular studies via microfluidics-generated double emulsions. Biomaterials 34: 4564– 4572. doi: 10.1016/j.biomaterials.2013.03.002 PMID: 23522800 20. Boedicker JQ, Li L, Kline TR, Ismagilov RF (2008) Detecting bacteria and determining their susceptibil- ity to antibiotics by stochastic confinement in nanoliter droplets using plug-based microfluidics. Lab Chip 8: 1265–1272. doi: 10.1039/B804911D PMID: 18651067 21. References 1. Xavier JB, Foster KR (2007) Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci USA 104: 876–881. doi: 10.1073/pnas.0607651104 PMID: 17210916 1. Xavier JB, Foster KR (2007) Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci USA 104: 876–881. doi: 10.1073/pnas.0607651104 PMID: 17210916 2. Cornforth DM, Popat R, McNally L, Gurney J, Scott-Phillips TC, Ivens A, et al. (2014) Combinatorial quorum sensing allows bacteria to resolve their social and physical environment. Proc Natl Acad Sci USA 111: 4280–4284. doi: 10.1073/pnas.1319175111 PMID: 24594597 2. Cornforth DM, Popat R, McNally L, Gurney J, Scott-Phillips TC, Ivens A, et al. (2014) Combinatorial quorum sensing allows bacteria to resolve their social and physical environment. Proc Natl Acad Sci USA 111: 4280–4284. doi: 10.1073/pnas.1319175111 PMID: 24594597 3. Russell AB, Peterson SB, Mougous JD (2014) Type VI secretion system effectors: poisons with a pur- pose. Nat Rev Microbiol 12: 137–148. doi: 10.1038/nrmicro3185 PMID: 24384601 3. Russell AB, Peterson SB, Mougous JD (2014) Type VI secretion system effectors: poisons with a pur- pose. Nat Rev Microbiol 12: 137–148. doi: 10.1038/nrmicro3185 PMID: 24384601 4. Connell JL, Whiteley M, Shear JB (2012) Sociomicrobiology in engineered landscapes. Nat Chem Biol 8: 10–13. doi: 10.1038/nchembio.749 PMID: 22173344 4. Connell JL, Whiteley M, Shear JB (2012) Sociomicrobiology in engineered landscapes. Nat Chem Biol 8: 10–13. doi: 10.1038/nchembio.749 PMID: 22173344 5. Drescher K, Shen Y, Bassler BL, Stone HA (2013) Biofilm streamers cause catastrophic disruption of flow with consequences for environmental and medical systems. Proc Natl Acad Sci USA 110: 4345– 4350. doi: 10.1073/pnas.1300321110 PMID: 23401501 5. Drescher K, Shen Y, Bassler BL, Stone HA (2013) Biofilm streamers cause catastrophic disruption of flow with consequences for environmental and medical systems. Proc Natl Acad Sci USA 110: 4345– 4350. doi: 10.1073/pnas.1300321110 PMID: 23401501 6. Renner LD, Weibel DB (2011) Physicochemical regulation of biofilm formation. MRS Bull 36: 347–355. doi: 10.1557/mrs.2011.65 PMID: 22125358 6. Renner LD, Weibel DB (2011) Physicochemical regulation of biofilm formation. MRS Bull 36: 347–355. doi: 10.1557/mrs.2011.65 PMID: 22125358 16 / 18 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 Bacterial Community Assembly in Microwells Reveals Role of Confinement 7. Murray JL, Connell JL, Stacy A, Turner KH, Whiteley M (2014) Mechanisms of synergy in polymicrobial infections. J Microbiol 52: 188–199. doi: 10.1007/s12275-014-4067-3 PMID: 24585050 8. Hol FJH, Dekker C (2015) Zooming in to see the bigger picture: microfluidic and nanofabrication tools to study bacteria. Science 346: 1251821. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 References Eun Y-J, Utada AS, Copeland MF, Takeuchi S, Weibel DB (2010) Encapsulating bacteria in agarose microparticles using microfluidics for high-throughput cell analysis and isolation. ACS Chem Biol 6: 260–266. doi: 10.1021/cb100336p PMID: 21142208 22. Churski K, Kaminski TS, Jakiela S, Kamysz W, Baranska-Rybak W, Weibel DB, et al. (2012) Rapid screening of antibiotic toxicity in an automated microdroplet system. Lab Chip 12: 1629–1637. doi: 10. 1039/C2LC21284F PMID: 22422170 23. Leung K, Zahn H, Leaver T, Konwar KM, Hanson NW, Pagé AP, et al. (2012) A programmable droplet- based microfluidic device applied to multiparameter analysis of single microbes and microbial commu- nities. Proc Natl Acad Sci USA 109: 7665–7670. doi: 10.1073/pnas.1106752109 PMID: 22547789 24. Lian M, Collier CP, Doktycz MJ, Retterer ST (2012) Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator. Biomicrofluidics 6: 044108. doi: 10.1063/1.4765337 PMID: 24198865 25. Park MC, Hur JY, Cho HS, Park S-H, Suh KY (2011) High-throughput single-cell quantification using simple microwell-based cell docking and programmable time-course live-cell imaging. Lab Chip 11: 79–86. doi: 10.1039/C0LC00114G PMID: 20957290 26. Ingham CJ, Sprenkels A, Bomer J, Molenaar D, van den Berg A, Vlieg JETVH et al. (2007) The micro- Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms. Proc Natl Acad Sci USA 104: 18217–18222. doi: 10.1073/pnas.0701693104 PMID: 17989237 27. Tan CP, Craighead HG (2010) Surface engineering and patterning using parylene for biological appli- cations. Materials 3: 1803–1832. doi: 10.3390/ma3031803 28. Ilic B, Craighead HG (2000) Topographical patterning of chemically sensitive biological materials using a polymer-based dry lift off. Biomed Microdevices 2: 317–322. doi: 10.1023/A:1009911407093 PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 17 / 18 Bacterial Community Assembly in Microwells Reveals Role of Confinement 29. Orth RN, Kameoka J, Zipfel WR, Ilic B, Webb WW, Clark TG, et al. (2003) Creating biological mem- branes on the micron scale: forming patterned lipid bilayers using a polymer lift-off technique. Biophys J 85: 3066–3073. doi: 10.1016/S0006-3495(03)74725-0 PMID: 14581207 30. Seitz R, Brings R, Geiger R (2005) Protein adsorption on solid–liquid interfaces monitored by laser- ellipsometry. Applied Surface Science 252: 154–157. doi: 10.1016/j.apsusc.2005.02.012 31. Timm CM, Hansen RR, Doktycz MJ, Retterer ST, Pelletier DA (2015) Microstencils to generate defined, multi-species patterns of bacteria. Biomicrofluidics 9: 064103. doi: 10.1063/1.4935938 PMID: 26594264 32. Zhao K, Tseng BS, Beckerman B, Jin F, Gibiansky ML, Harrison JJ, et al. PLOS ONE | DOI:10.1371/journal.pone.0155080 May 6, 2016 References (2013) Psl trails guide explo- ration and microcolony formation in Pseudomonas aeruginosa biofilms. Nature 497: 388–391. doi: 10. 1038/nature12155 PMID: 23657259 33. Hansen RR, Wufsus AR, Barton ST, Onasoga AA, Johnson-Paben RM, Neeves KB (2013) High con- tent evaluation of shear dependent platelet function in a microfluidic flow assay. Ann Biomed Eng 41: 250–262. doi: 10.1007/s10439-012-0658-5 PMID: 23001359 34. Kirschner CM, Brennan AB (2012) Bio-inspired antifouling strategies. Annual Review of Materials Research 42: 211–229. doi: 10.1146/annurev-matsci-070511-155012 35. Hansen RR, Hinestrosa JP, Shubert KR, Morrell-Falvey JL, Pelletier DA, Messman JM, et al. (2013) Lectin-functionalized poly(glycidyl methacrylate)-block-poly(vinyldimethyl azlactone) surface scaffolds for high avidity microbial capture. Biomacromolecules 14: 3742–3748. doi: 10.1021/bm4011358 PMID: 24003861 36. Hansen RR, Shubert KR, Morrell-Falvey JL, Lokitz BS, Doktycz MJ, Retterer ST (2014) Microstructured block copolymer surfaces for control of microbe adhesion and aggregation. Biosensors 4: 63–75. doi: 10.3390/bios4010063 PMID: 25587410 37. Röttgermann PJF, Alberola AP, Rädler JO (2014) Cellular self-organization on micro-structured sur- faces. Soft Matter 10: 2397–2404. doi: 10.1039/c3sm52419a PMID: 24623049 38. Hatch AC, Fisher JS, Tovar AR, Hsieh AT, Lin R, Pentoney SL, et al. (2011) 1-Million droplet array with wide-field fluorescence imaging for digital PCR. Lab Chip 11: 3838–3845. doi: 10.1039/c1lc20561g PMID: 21959960 39. Young JW, Locke JCW, Altinok A, Rosenfeld N, Bacarian T, Swain PS, et al. (2011) Measuring single- cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy. Nat Protoc 7: 80–88. doi: 10.1038/nprot.2011.432 PMID: 22179594 40. Van der Meeren P, De Vleeschauwer D, Debergh P (2001) Determination of oxygen profiles in agar- based gelled in vitro plant tissue culture media. Plant Cell, Tissue and Organ Culture 65: 239–245. doi: 10.1023/A:1010698225362 41. LeRoux M, De Leon JA, Kuwada NJ, Russell AB, Pinto-Santini D, Hood RD, et al. (2012) Quantitative single-cell characterization of bacterial interactions reveals type VI secretion is a double-edged sword. Proc Natl Acad Sci USA 109: 19804–19809. doi: 10.1073/pnas.1213963109 PMID: 23150540 42. Short FL, Murdoch SL, Ryan RP (2014) Polybacterial human disease: the ills of social networking. Trends Microbiol 22: 508–516. doi: 10.1016/j.tim.2014.05.007 PMID: 24938173 18 / 18
https://openalex.org/W2095663472
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A cluster randomised controlled trial of the community effectiveness of two interventions in rural Malawi to improve health care and to reduce maternal, newborn and infant mortality
Trials
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* Correspondence: s.lewycka@ich.ucl.ac.uk 1Centre for International Health and Development, UCL Institute of Child Health, 30 Guilford St, WC1N 1EH, London, UK Full list of author information is available at the end of the article TRIALS Open Access A cluster randomised controlled trial of the community effectiveness of two interventions in rural Malawi to improve health care and to reduce maternal, newborn and infant mortality A cluster randomised controlled trial of the community effectiveness of two interventions in rural Malawi to improve health care and to reduce maternal, newborn and infant mortality Sonia Lewycka1*, Charles Mwansambo2, Peter Kazembe3, Tambosi Phiri4, Andrew Mganga4, Mikey Rosato1, Hilda Chapota4, Florida Malamba4, Stefania Vergnano5, Marie-Louise Newell6, David Osrin1, Anthony Costello1 © 2010 Lewycka et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. TRIALS TRIALS Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 TRIALS * Correspondence: s.lewycka@ich.ucl.ac.uk 1Centre for International Health and Development, UCL Institute of Child Health, 30 Guilford St, WC1N 1EH, London, UK Full list of author information is available at the end of the article © 2010 Lewycka et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Exclusive breastfeeding l b f d Exclusive breastfeeding is recommended worldwide, but not always practised. Where supplementary or replace- ment foods are given to young infants, there is a risk of compromising infant nutrition and of introducing infec- tion. Women with HIV can reduce the risk of vertical transmission by choosing not to breastfeed [4,5], but in rural Africa this is not a viable option. Formula feeds are expensive and local water supplies likely to be unclean, and nutritious replacement foods may be unaf- fordable. There is clear evidence that increased duration and exclusivity of breastfeeding is associated with decreased diarrhoea incidence and better infant survival [6-8]. Current WHO guidelines for the HIV uninfected mother or of unknown status recommend exclusive breastfeeding of their infants for the first six months of life, introducing appropriate complementary foods there- after, and continue breastfeeding for the first 12 months of life. Breastfeeding should then only stop once a nutri- tionally adequate and safe diet without breast-milk can be provided [5]. Our study will evaluate two community-based inter- ventions aimed at reducing newborn and infant mortal- ity rates through either mobilisation of women’s groups or home visits by village women volunteers focusing on maternal and infant care and feeding practices. Several previous trials have evaluated similar interventions in south Asia, but none have examined these approaches in sub-Saharan Africa, in settings where HIV, malaria, maternal and newborn mortality are common. Our study uses a cluster-randomised and controlled design with buffer zones to reduce the risk of contami- nation. We hope it will provide policymakers with new and evidence-based options for strategies to reduce new- born and child mortality. Abstract Background: The UN Millennium Development Goals call for substantial reductions in maternal and child mortality, to be achieved through reductions in morbidity and mortality during pregnancy, delivery, postpartum and early childhood. The MaiMwana Project aims to test community-based interventions that tackle maternal and child health problems through increasing awareness and local action. Methods/Design: This study uses a two-by-two factorial cluster-randomised controlled trial design to test the impact of two interventions. The impact of a community mobilisation intervention run through women’s groups, on home care, health care-seeking behaviours and maternal and infant mortality, will be tested. The impact of a volunteer-led infant feeding and care support intervention, on rates of exclusive breastfeeding, uptake of HIV- prevention services and infant mortality, will also be tested. The women’s group intervention will employ local female facilitators to guide women’s groups through a four-phase cycle of problem identification and prioritisation, strategy identification, implementation and evaluation. Meetings will be held monthly at village level. The infant feeding intervention will select local volunteers to provide advice and support for breastfeeding, birth preparedness, newborn care and immunisation. They will visit pregnant and new mothers in their homes five times during and after pregnancy. preparedness, newborn care and immunisation. They will visit pregnant and new mothers in their homes five times during and after pregnancy. The unit of intervention allocation will be clusters of rural villages of 2500-4000 population. 48 clusters have been defined and randomly allocated to either women’s groups only, infant feeding support only, both interventions, or no intervention. Study villages are surrounded by ‘buffer areas’ of non-study villages to reduce contamination between intervention and control areas. Outcome indicators will be measured through a demographic surveillance system. Primary outcomes will be maternal, infant, neonatal and perinatal mortality for the women’s group inter- vention, and exclusive breastfeeding rates and infant mortality for the infant feeding intervention. g y g Structured interviews will be conducted with mothers one-month and six-months after birth to collect detailed quantitative data on care practices and health-care-seeking. Further qualitative, quantitative and economic data will be collected for process and economic evaluations. Trial registration: ISRCTN06477126 Page 2 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Background and rationale the treatment or referral of high risk or symptomatic infants. ENC forms an integral part of Safe Motherhood Programmes (SMP) and the WHO Integrated Manage- ment of Childhood Illness (IMCI) strategy. Currently, WHO and UNICEF aim to improve newborn care through the ‘integrated management of pregnancy and childbirth’ (IMPAC) package as part of SMP, and post- perinatal mortality through the IMCI strategy. Both stra- tegies recognise that improvement in health status in poor communities is strongly related to family caretak- ing practices. There has been less than satisfactory progress, especially in sub-Saharan Africa, towards the child and maternal mortality targets of Millennium Development Goals (MDGs) 4 and 5. The Countdown group reported that most of 68 target countries had made little or no pro- gress towards the child survival target, and that 12 countries in sub-Saharan Africa had actually seen rever- sals in child survival rates [1]. The neonatal period has been especially resistant to change and, as mortality in later infancy has fallen, globally the proportion of under-five deaths occurring in the newborn period is now close to 40%. The importance of maternal, infant and neonatal health in Malawi The maternal mortality ratio in Malawi has been reported as 984 per 100 000 [2] - one of the highest in the world. Neonatal mortality accounts for about one third of infant mortality; the Demographic and Health Survey report for 2004 indicates an infant mortality ratio (IMR) of 76 per 1000 and a neonatal mortality ratio (NMR) of 27 per 1000 [2]. For women who seek contact with health services, the quality of care they receive may be compromised due to low public health expenditure, high turnover of service providers, lack of drugs and supplies in many facilities, and lack of owner- ship of health programmes by local communities [3]. Further, in rural Malawi more than half of deliveries occur at home, and these home deliveries may be more likely to result in adverse maternal or perinatal outcomes. According to the Malawi DHS [2], only 28% of children 4-5 months of age are exclusively breastfed, and median duration of exclusive breastfeeding is 2.5 months. Infants may be given water or a watery porridge as early as one week of age. This may be because the mother is per- ceived to not be producing enough milk, or the baby is believed to be crying excessively. Traditional remedies and home-made gripe-water may also be given to strengthen the baby and protect from illness ([9]; and MaiMwana baseline research). Early introduction of complementary feeds can increase the risk of gastroin- testinal infection and growth faltering [10,11]. Essential newborn care and safe motherhood HIV is an important issue in any health intervention where prevalence is high. It has a direct impact on the health of those infected with the virus, and indirect impact through the larger societal effects of HIV-related illness in people of working age, such as key health workers, and an increased burden on the family of Essential newborn care and safe motherhood Essential newborn care (ENC) is based on the simple principles of basic resuscitation, avoidance of hypother- mia, improvements in perinatal hygiene, early breast- feeding and protecting maternal-infant bonding. It also promotes antenatal care, delivery at health facilities and Page 3 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 caring for sick people and orphans. Children born to mothers with HIV are at increased risk of dying, even when they themselves are uninfected [12]. However, in the absence of any intervention, 30-45% of children born to mothers with HIV will become infected through in-utero, peripartum or breast milk exposure, and, with- out treatment, 35% of these will die before they are one year old [13]. Initiatives such as the Global Fund have helped to make services for prevention of mother-to- child transmission of HIV (PMTCT) more widely avail- able in Malawi, including HIV testing during antenatal care, free treatment for HIV-positive mothers and babies, and breastfeeding advice. Malawi’s estimated HIV prevalence among women between 15 and 49 years is approximately 13.3% [2], and there is a need for appropriate interventions to reduce the risk of MTCT. Single dose Nevirapine was adopted as the minimum prophylaxis regimen in national policy - one dose for mothers at onset of labour and one dose for infants immediately after birth. This has been shown to reduce MTCT by 40% in a trial setting [14]. The Ministry of Health has now introduced a combination antiretroviral prophylaxis regimen at facilities with the capacity to offer this. appropriate decisions, increased community commit- ment to planned work ensures its sustainability, the community gains some power and control over any planned work, and there may be more resources avail- able for the work as local materials and manpower can be used. Furthermore, simply providing people with informa- tion about health risks is not always enough to change behaviour. Health is indirectly but powerfully affected by the social environment in which personal behaviours are embedded [19]. Why use community-based interventions? The rationale for using community-based interventions is based on the fact that many maternal and neonatal deaths occur at home, and could potentially be avoided by changes in antenatal and newborn care practice and better understanding of health problems. Stimulating uptake and improving coverage of health services must also begin at community level. Consolidation of the links between primary health care services and their users is essential, as described in the Alma-Ata Declara- tion [15]. This involves both improving the quality of the services and creating demand and awareness in communities. Reasons for under-use of existing services are complex, and in order to increase uptake, not only must physical barriers to access be removed, but issues of service quality and community perceptions of service providers must be addressed. Model strategies for women’s group community mobilisation interventions h d d l The Warmi Project - introduced in a rural area of Bolivia with little health infrastructure and widespread poverty - was the first published account of a community participa- tory intervention to improve perinatal care [24-26]. It employed participatory planning methods and commu- nity action cycles focused on mother and infant care. Groups of women worked together to identify and priori- tise key maternal and neonatal health problems, then developed local strategies to address them. Within three years, the Warmi Project had achieved a substantial decrease in the perinatal mortality rate, from 117 to 44 per thousand births. However, it is difficult to draw firm conclusions because the study lacked a control group and had relatively low statistical power. Essential newborn care and safe motherhood In Nepal, providing direct one-to- one basic information on infant care and family plan- ning did not result in significant changes in behaviour [20]. Similarly, a review of HIV prevention projects found only one in four participants on average can be expected to change behaviour through individually focused behavioural interventions [21]. More success has been achieved through health alliances or partner- ships, and the stronger the representation by the com- munity, and the greater the community involvement in the practical activities of the health promotion, the greater the impact and the more sustainable the gains. A social change approach takes the focus away from individuals and encourages community responsibility for action. Community-based programmes can “help to provide enabling conditions for the renegotiation of [behaviour] at the collective level, rather than attempt- ing to persuade people to make an individual decision to change their behaviour by simply providing them with information about health risks” [22,23]. Objectives To test the impact of an intervention using community mobilisation through women’s groups on: To test the impact of an intervention using community mobilisation through women’s groups on: a) Care practices and health care seeking behaviour for mothers and infants. b) Maternal and infant morbidity. c) Maternal, infant, neonatal and perinatal mortality. To document and evaluate the process and costs for potential replicability and sustainability. The best work on infant feeding in Africa has been done by LINKAGES, which works with Ministries of Health and other partners to promote breastfeeding by enlisting the support of families and communities, and by building a critical mass of breastfeeding advocates for community programmes. LINKAGES programmes in Africa have already had substantial impacts judged by before-and-after analyses [31]. In Madagascar, exclusive breastfeeding rates increased from 46% to 68% and in Ghana rates increased from 31% to 68%. Whilst the LINKAGES work provides interesting models for imple- mentation, their community cost-effectiveness on a larger scale remains uncertain, as the evaluation of the intervention is not based on an experimental, rando- mised design, and the economic evaluation has not yet been reported. To test the impact of an intervention delivering health education through volunteer peer counsellors on: a) Exclusive breastfeeding rates, other care practices and health care seeking behaviour. b) Maternal and infant morbidity. c) Infant mortality. To document and evaluate the process and costs for potential replicability and sustainability. Justification for this study Justification for this study outcomes. Over a two-year period, neonatal mortality was reduced by 30% in intervention clusters compared with controls. The intervention used trained local facilita- tors to mobilise the groups. There has been little research in rural Africa on sustain- able community-based interventions to reduce maternal and perinatal mortality, though this is changing. Government partners are involved in operational research in Ethiopia, Malawi, Mali, Mozambique, Tanza- nia and Uganda (Saving Newborn Lives, personal com- munication), and the Newhints trial in Ghana is looking at home visits by community-based volunteers [32]. Similarly, although there have been trials of behaviour change interventions for the promotion of exclusive breastfeeding in Mexico, Bangladesh and India, few pub- lished studies report similar interventions in rural Africa. Following on from the successes of community- based interventions in other settings in Asia and South America, we decided to test similar interventions in a rural African setting with high malaria and HIV. We believe this project will provide policy-relevant answers to key questions about strategies to improve mother and newborn health in Africa. Another recent study, from Jharkhand and Orissa in India, showed similar impact of women’s groups. Neo- natal mortality was reduced by 45% in intervention areas in the second and third years (OR 0.55 95% CI 0.46-0.66) [28]. However, such major changes were not seen in a study from Bangladesh, which may have been due to limited coverage of community activities [29]. Model strategies for infant feeding and care counselling interventions Three cluster-randomised controlled trials conducted in Mexico, Bangladesh and India have shown significant impacts of peer-led counselling on exclusive breastfeeding rates and reduced infant illness. In Mexico City, follow-up at 3 months after birth found that 67% and 50% of the intensive and less intensive counselling intervention groups respectively were still exclusively breastfeeding, compared to 12% of the control group [6], and both inter- vention groups had less diarrhoea than control infants. In Dhaka, Bangladesh, follow-up at 3 months and 5 months after birth found 83% and 70% respectively of women in the intervention areas exclusively breastfeeding, compared with 18% and 6% in control areas [30]. In these two inter- ventions the counsellors were paid employees of the pro- jects, but in Haryana State, India, they used volunteer counsellors, and also included monthly community meet- ings and opportunistic visits by community-based health workers and traditional birth attendants. At 3 months after birth, 79% of infants in the intervention areas were exclusively breastfed, compared with 48% in control areas. The difference was still significant at 6 months (after which complementary feeds were introduced), with 42% of women in intervention areas exclusively breastfeeding, compared with 4% in control areas [8]. Goal To improve the survival and health of mothers and infants in rural communities in Mchinji, Malawi. To test the effectiveness of two community-based health promotion interventions for improving mother and child health and reducing mortality. Why promote participation in health care? Community-based health interventions do not always involve the community in decision-making. As there are different perceptions of priorities between officials and communities, communities may feel their needs are not being met, and powerful groups may capture resources [16-18]. Groups most consistently excluded from deci- sion-making have been women and children. Involving groups who have traditionally had little influence in decision-making is important because community mem- bers have experience and insight that can lead to more The MIRA Makwanpur study, Nepal - the main opera- tional model for this project - was a cluster-randomised controlled trial of a community-based participatory inter- vention to improve the health of pregnant mothers and newborn infants [27]. MIRA used community action cycles run by women’s groups, based on the Warmi model, to bring about improvements in perinatal health Page 4 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Methods/Design Study design The intervention will be evaluated in a cluster-rando- mised controlled trial. A cluster design has been chosen because the allocation and loci of delivery of the inter- ventions (community clusters) are groups rather than individuals. 48 rural clusters have been identified. 24 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Page 5 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 and infant morbidity, increases in exclusive breastfeed- ing rates in the first six months, increases in health-care seeking behaviour, and changes in care-taker practices. have been allocated to receive the women’s group inter- vention and 24 will act as controls. Using a factorial design, each of these arms of the women’s group trial was randomized a second time, 12 clusters to receive the volunteer counseling intervention and 12 to act as controls. An independent surveillance system for out- comes - births, morbidity, mortality, and care seeking - has been designed and implemented in all 48 clusters, covering a population of 144,000 (Figure 1). Design and unit of randomisation Will volunteer infant feeding and care counselling for pregnant and breastfeeding mothers in their homes reduce infant mortality through changes in knowledge and practices regarding exclusive breastfeeding, family planning and other care practices and health-seeking behaviours? A cluster-randomised controlled trial, with a two-by-two factorial design, will be used to test the impact of two interventions on specific outcome indicators. 48 clusters or ‘zones’ were defined from the Enumeration Areas generated during the 1998 census (Figure 2a). Each zone contained a population of approximately 8000 in total. A population of around 3000 was selected from the cen- tre of each zone, leaving a ‘buffer area’ around it to reduce contamination between neighbouring interven- tion and control areas (Figure 3). Hypotheses Women’s group activities will lead to: reductions in maternal, perinatal, neonatal and infant mortality, reduc- tions in maternal and infant morbidity, and increases in recognition of high-risk symptoms, increased health-care seeking behaviour and changes in care-taker practices. Study endpoints and outcomes The study endpoints are shown in Table 1. The inter- ventions will run for two years from the date when they are hypothesised to start having an effect, nine months after the start of the interventions, allowing for new pregnancies to have the maximum benefit of exposure to interventions. If a valuable effect is shown at the end of this period, the intervention models - refined on the basis of experience - will be implemented in the control areas. Primary research questions Will community mobilisation through women’s groups reduce perinatal, neonatal, infant and maternal mortality rates through changes in care practices and health-seek- ing behaviour? Setting Infant feeding and care counselling sessions will lead to: reductions in infant mortality, reductions in maternal Mchinji district lies to the west of Lilongwe, in the Cen- tral Region of Malawi. It has international borders with Figure 1 Two-by-two factorial design. Community-based women’s group mobilisation intervention and home-based infant feeding and care counselling, with basic health service strengthening for both intervention and control areas Figure 1 Two-by-two factorial design. Community-based women’s group mobilisation intervention and home-base counselling, with basic health service strengthening for both intervention and control areas Figure 1 Two-by-two factorial design. Co Figure 1 Two-by-two factorial design. Community-based women’s group mobilisation intervention and home-based infant feeding and care counselling, with basic health service strengthening for both intervention and control areas Page 6 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Table 1 Study outcomes Women’s groups Volun Primary outcomes ▪Maternal mortality ▪Perinatal mortality ▪Neonatal mortality ▪Infant mortality ▪Rat ▪Infa Secondary outcomes ▪Recognition of high-risk symptoms and signs: failure to feed, breathlessness, floppiness. ▪Changes in caretaker practices: hygiene behaviours, use of insecticide treated nets (ITNs), early and exclusive breastfeeding and decreased use of pre-lacteal feeds ▪Changes in care-seeking behaviour: antenatal care (use of malaria prophylaxis in pregnancy, tetanus toxoid), delivery (facility- based, skilled attendant, use of safe delivery kit), uptake of PMTCT (VCT, nevirapine for mother and baby), postnatal care (check-ups for mother and baby, infant vaccinations), referral patterns. ▪Maternal and infant morbidity (breast problems, fever, diarrhoea, etc.) ▪Cha feed, treatm prepa plann ▪Cha VCT, n cessa penta • Neo • Mat grow Table 1 Study outcomes Women’s groups Volunteer infant feeding and care counsellors Primary outcomes ▪Maternal mortality ▪Perinatal mortality ▪Neonatal mortality ▪Infant mortality ▪Rates of exclusive breastfeeding (EBF) in the first six months ▪Infant mortality Secondary outcomes ▪Recognition of high-risk symptoms and signs: failure to feed, breathlessness, floppiness. ▪Changes in caretaker practices: hygiene behaviours, use of insecticide treated nets (ITNs), early and exclusive breastfeeding and decreased use of pre-lacteal feeds ▪Changes in care-seeking behaviour: antenatal care (use of malaria prophylaxis in pregnancy, tetanus toxoid), delivery (facility- based, skilled attendant, use of safe delivery kit), uptake of PMTCT (VCT, nevirapine for mother and baby), postnatal care (check-ups for mother and baby, infant vaccinations), referral patterns. Setting ▪Maternal and infant morbidity (breast problems, fever, diarrhoea, etc.) ▪Changes in caretaker practices: EBF (duration of EBF, time to first feed, use of pre-lacteals, time to weaning), management and treatment of breast problems, recognition of danger signs, birth preparedness (clean razor, clean plastic sheet, soap, thread), family planning (including use of condoms) ▪Changes in care-seeking behaviour: uptake of PMTCT (awareness, VCT, nevirapine for mother and baby, expressing breastmilk, early cessation of breastfeeding), uptake of vaccination services (3 doses pentavalent and 4 doses polio by 6 months • Neonatal mortality • Maternal and infant morbidity (breast problems, fever, diarrhoea, growth etc.) Table 1 Study outcomes Volunteer infant feeding and care counsellors ▪Rates of exclusive breastfeeding (EBF) in the first six months ▪Infant mortality ▪Changes in caretaker practices: EBF (duration of EBF, time to first feed, use of pre-lacteals, time to weaning), management and treatment of breast problems, recognition of danger signs, birth preparedness (clean razor, clean plastic sheet, soap, thread), family planning (including use of condoms) ▪Changes in care-seeking behaviour: uptake of PMTCT (awareness, VCT, nevirapine for mother and baby, expressing breastmilk, early cessation of breastfeeding), uptake of vaccination services (3 doses pentavalent and 4 doses polio by 6 months N t l t lit p p y • Neonatal mortality • Neonatal mortality • Maternal and infant morbidity (breast problems, fever, diarrhoea, growth etc.) In 2006 it was reported that 99% of women in Mchinji attended antenatal care at least once during their preg- nancy, but only 58% delivered at a health facility [34]. Maternal and perinatal health care is provided by per- sonnel from one district hospital (a first referral and secondary health facility), four rural community hospi- tals (one government and three mission hospitals), one Zambia and Mozambique, and a population of about 375,000 in 2004 [33], of whom about 80% live in rural areas and make a living through subsistence farming. The main ethnic group are the Chewa (90%), and the predominant religion is Christianity (97%). Comparison of some key socioeconomic and health indicators for Mchinji and Malawi are shown in Table 2. Figure 2 a - Aggregation of census enumeration areas into 48 study ‘zones’, b - Random allocation of zones to four different combinations of intervention. Figure 2 a - Aggregation of census enumeration areas into 48 study ‘zones’, b - Random allocation of zones to four different combinations of intervention. Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Page 7 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Figure 3 Study villages and buffer areas in three clusters near Mchinji Boma. maternal and child health. The district administrative centre was excluded because it is more urbanised than the rest of the district and therefore not comparable to other clusters. The target group for participation in both of the interventions will be women of childbearing age (WCBA), between the ages of 15 and 49 years, and par- ticularly pregnant mothers. Girls aged between 10 and 15 years will also be monitored and encouraged to parti- cipate in order to identify and support early teenage mothers. Target group and eligibility criteria The target population will be rural communities with the least access to health services, who might benefit most from community-based interventions to improve Table 2 Socioeconomic and health indicators for Mchinji and Malawi Mchinji Malawi Poverty Human Development Index (out of 182 countries) - 160 GNP per capita (US$) - 690 Percent below $2 per day - 90% Education Female literacy (over 5 years of age) 46% 51% Educational attainment - primary 60% 59% - secondary 5% 8% Health Access to improved water source 46% 45% Access to sanitation 66% 53% Total fertility rate (births per woman) 7.6 6.5 Crude birth rate (per 1,000 population) 55 50 Maternal mortality ratio (per 100,000 live births) - 984 Infant mortality rate (per 1,000 live births) - 76 Neonatal mortality rate (per 1,000 live births) - 27 Sources: Malawi Population and Housing Census, 1998, Malawi DHS, 2004, World Bank 2006, State of the World’s Newborns report 2001, UNDP 2009 Table 2 Socioeconomic and health indicators for Mchinji and Malawi Volunteer infant feeding and care counsellors Older women will also be encouraged to attend as they influence decision-making around preg- nancy, childbirth and child care and have valuable experiences to share. All women aged 10 to 49 years (inclusive) who agree to take part, will be enrolled into the study, regardless of whether they are married or not. Women who have no possibility of conceiving during the study period will be enumerated but excluded from the final sample (for example women who have had hysterectomies or term- inal family planning procedures). Participation in inter- vention activities will be voluntary, and women’s groups will be free to establish their own membership criteria. maternity unit, six health centres that provide maternity care, two dispensaries and two private clinics that offer antenatal care. Quality is compromised by the severe shortage of personnel, low morale of the health provi- ders, and irregular drug supplies. Traditional Birth Attendants are available in all localities. The trial is being implemented by MaiMwana project, a Malawian trust established in 2003, as a collaboration between the Department of Paediatrics, Kamuzu Central Hospital, the Mchinji District Hospital and the UCL Centre for International Health and Development. A cohort of 44,000 women aged between 10 and 49 years was defined during the baseline phase of the study, and each is visited monthly by study personnel. From the beginning of the study period we identified all pregnancies, births and deaths occurring within the cohort of WCBA, with follow-up until at least one year after delivery. The cohort members are listed in a mas- ter document to which new names can be added: the cohort is open and new participants may be enrolled during the study period if they move into the study area, or if they reach 15 years of age. Women’s group intervention The women’s group intervention seeks to build the capacities of communities to take control of the mother and child health issues that affect them. The interven- tion is community-based in that it defines the commu- nity as the agent of change [35]. To achieve this, 24 local female facilitators, one per cluster, were recruited and trained. The facilitators formed between six and 12 groups in their clusters and invited all women of childbearing age to attend. They guide the groups of women through a four-phase community mobilisation action cycle developed to be appropriate, accessible and feasible for the Malawian context from similar models in Bolivia and Nepal (Figure 4) [36,37]. In the first phase, consisting of eight meetings, the groups identify and prioritise the mother and child health problems they feel are most important and dis- cuss what may contribute to these problems and how Page 8 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Table 3 Elements of the women’s group and infant feeding and care counselling interventions Women’s groups Volunteer infant feeding and care counsellors Specific objectives Elements of the interventions The activities of Volunteer MaiMwana Counsellors (VMCs) will be the key to this intervention. Three VMCs will work within one Zone, covering an average population of 1,000 each. Each VMC will visit all pregnant mothers in her area 5 times - once before birth and four times after birth - to discuss the importance of exclusive breastfeeding, and to give support and advice on mother and child health. She will also help to identify any breastfeeding problems and refer them to a health facility. The activities of Zonal Facilitators (ZFs) are the key to this intervention. Each facilitator will work within one Zone, covering an average population of 3,000. She will facilitate the activities of women’s groups within the Zone as they address the issues of pregnancy, childbirth, newborn and infant health. Each women’s group will move through a participatory planning cycle of assessment, sharing experiences, planning, action and reassessment, with the aim of improving essential maternal and newborn care. meeting of this phase they share their discussions with the whole community. In the third phase, consisting of four meetings, the membership of the groups expands to include all community members, including men, working together to implement the strategies that have they might be prevented and managed. In the last meet- ing of this phase they share their discussions with men in the community. In the second phase, consisting of four meetings, the groups plan locally feasible strategies to address the problems they have prioritised. In the last Figure 4 Women’s group cycle. Figure 4 Women’s group cycle. Page 9 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 been identified. In the fourth phase, four meetings, the groups evaluate what they have done, and plan for the future. The facilitators received minimal health training but use participatory rural appraisal tools and picture cards to facilitate discussions and enable groups to access their collective knowledge and capacities. With these capacities the groups take increasing control of the intervention over the course of the cycle. They do not receive any resources from MaiMwana Project, except the guidance of the facilitator, employed by MaiMwana project, and supported by four trained supervisors and a senior supervisor. at one month after birth and covers the same issues as the previous visit, with the addition of information about weaning. Elements of the interventions The fourth visit occurs at three months after birth and covers the same issues as the third visit. The fifth visit is conducted at five months after birth and covers the same issues as the third and fourth visits with the addition of information about weaning foods. The volunteer counsellors received minimal health training but use a picture book to facilitate learning. The volunteer counsellors are supervised by 24 govern- ment Health Surveillance Assistants, and the interven- tion is coordinated by one supervisor employed by MaiMwana project. Volunteer infant feeding and care counselling intervention Volunteer infant feeding and care counselling intervention The volunteer counselling intervention seeks to change the behaviour of individuals in relation to care and care- seeking for mothers and children. The intervention is community-based in that it defines the community as the target of change [35]. In particular, the intervention seeks to provide health education to raise the awareness, change the attitudes and build the self-efficacy of mothers in relation to exclusive breastfeeding. To achieve this, 72 female volunteers, between two and four per cluster, were recruited and trained to identify preg- nant women in their area and visit them at home to provide counselling and support to exclusively breast- feed their infants and perform other key infant care practices. The volunteer counsellors visit these women at five key times in pregnancy and after birth (Table 4). The first visit is conducted in the third trimester, and the mother receives information regarding the impor- tance of early and exclusive breastfeeding, PMTCT, birth preparedness and family planning. The second visit is conducted in the first week after birth (and where possible within the first three days), when the mother receives information on the importance of exclusive breastfeeding, vaccinations, warmth and hygiene and family planning. The mother also receives information about danger signs for herself and her child, advice about breast problems and support for good attachment and positioning. The third visit is conducted Randomisation and allocation The 48 study zones were randomly allocated to one of four groups; 12 zones receiving infant feeding counsel- ling and facilitation, 12 zones receiving facilitation only, 12 zones receiving infant feeding counselling and no facilitation, and 12 zones receiving neither (Figure 1 and Figure 2b). All zones will benefit from the district-wide training and support for health services from the pro- ject’s initiation. Random number generation was done in STATA 7.0, and each of the 48 clusters was allocated to one of four possible combinations of interventions. In this way, each intervention was stratified according to the presence or absence of the other one, in order to balance any effects of one intervention on outcomes of interest in the other. SL and DO generated the random number sequence and allocated the clusters to intervention groups. All women aged between 10 and 49 years resid- ing within the clusters were eligible for inclusion in the interventions and follow-up of maternal and child health outcomes. Records of a woman’s migrations within and outside of the study area are recorded in order to allow for both ‘intention to treat’ and ‘per protocol’ analysis. Due to the nature of the interventions, blinding of study participants to their allocation was not possible, though analysts and trial monitors will be blinded to the Table 4 Volunteer infant feeding and care counselling intervention meeting guide Visit 1 Visit 2 Visit 3 Visit 4 Visit 5 Pregnancy After birth 3rd trimester 1st week 1 month 3 months 5 months *Introduction *Early BF *Exclusive BF *PMTCT *Birth-preparedness *Family planning and condoms *Attachment & positioning *Exclusive BF *Vaccinations *Warmth *Hygiene *Danger signs *Family planning and condoms *Advice on BF problems *Attachment & positioning *Exclusive BF *Vaccinations *Warmth *Hygiene *Danger signs *Discuss weaning at 6 m *Advice on BF problems *Attachment & positioning *Exclusive BF *Vaccinations *Warmth *Hygiene *Danger signs *Discuss weaning at 6 m *Advice on BF problems *Attachment & positioning *Exclusive BF *Vaccinations *Warmth *Hygiene *Danger signs *Discuss weaning at 6 m *Discuss weaning foods *Advice on BF problems Page 10 of 15 Page 10 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 5% significance level and an inter-cluster coefficient of variation (k) of between 0.15 and 0.30, using the metho- dology laid out by Hayes et al [39]. Randomisation and allocation An estimate of k = 0.25 came from work on interventions to reduce HIV incidence rates [40], and later from work in Makwanpur, Nepal [27]. We assumed that variability in neonatal, infant and maternal mortality between clusters would be less in rural Malawi, due to fairly uniform exposure to risk factors such as poor hygiene and poor quality or absent delivery care and malaria. In addition, we reduced potential heterogeneity by excluding the main district administrative centre, as it was felt to be socio-economically and demographically different from rural villages. In recognition of the lack of certainty for this estimate, sample sizes were calculated for a range of values of k. study allocation until the definitive analysis is per- formed. Data will be collected independently from inter- vention implementation, and no results will be fed back to inform the interventions. * Malawi DHS data used is the national estimate, as data were not disaggregated for Mchinji District Sample size The sample size for the cluster randomised controlled trial was arrived at by comparing statistical power for different estimates of population parameters. Parameters estimated included baseline mortality rates, the pro- jected size of the reduction in maternal, neonatal and infant mortality and increase in exclusive breastfeeding rates due to the interventions, the number of births in each cluster over the trial period, the number of clusters in the intervention and control groups, the statistical power of the study, and the inter-cluster coefficient of variation. Realistic values of some of these parameters were difficult to estimate, as few population-level mor- tality data were available, especially at district and sub- district level. The sources of data and values used for these estimates and sample size calculations are sum- marised in Table 5. We aimed to achieve the smallest sample size that would allow adequate statistical power to detect an impact within a reasonable time-frame and would be logistically feasible to implement. Interactions between the women’s group and volunteer infant feeding and care counselling intervention Through the two-by-two design, it will be possible to assess the interaction between the two interventions, though the study is not powered to evaluate the com- bined impact of the interventions on mortality com- pared to single interventions alone, as this would have required an unfeasibly large sample. We will explore qualitatively and quantitatively whether or not there is a synergistic relationship between the two interventions, resulting in an effect greater in magnitude than either intervention alone. We might expect that women in an enabling environment (provided by women’s groups) Initial sample size estimates were made using national estimates of crude birth rates and mortality rates from the Malawi DHS for 2000 [38], subsequently revised after the results for the 2004 DHS survey were released [2]. Estimates were made with 80% power, a two-sided Table 5 Parameters used to estimate sample size, and the estimated size of reductions or increases that would be detectable Parameter Source of estimate DHS parameter estimates (2006) Number of clusters Geopolitical subdivisions and logistical efficiency 48 Population per cluster (Calculated) 3,000 Crude birth rate (per 1000 population) National data from MDHS* 42 Time frame (years) Funding period 2 Births per cluster within study period (Calculated) 252 Inter-cluster coefficient of variation (k) Hayes 1995 0.15-0.3 Statistical power of the study Probability of Type I error Probability of Type II error 0.05 0.2 Neonatal mortality rate (per 1000 live births) National data from MDHS* 27 Size of reduction detectable (Calculated) 31-36% Maternal mortality ratio (per 100,000 live births) National data from MDHS* 984 Size of reduction detectable (Calculated) 47-50% Infant mortality rate (per 1000 live births) National data from MDHS* 76 Size of reduction detectable (Calculated) 21-28% Exclusive breastfeeding (%) National data from MDHS* 27.5% Size of increase detectable (Calculated) 16-30% * Malawi DHS data used is the national estimate as data were not disaggregated for Mchinji District able 5 Parameters used to estimate sample size, and the estimated size of reductions or increases that would be etectable le 5 Parameters used to estimate sample size, and the estimated size of reductions or increases that would be ectable meter So rce of estimate DHS parameter estimates (2006) s used to estimate sample size, and the estimated size of reductions or increases that would be Page 11 of 15 Page 11 of 15 Lewycka et al. Interactions between the women’s group and volunteer infant feeding and care counselling intervention Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 would find it easier to discuss health issues and make health-seeking decisions for themselves and their babies than women in control areas where social barriers to care-seeking have not been addressed. More specifically, women in areas receiving both interventions might be more likely to use the Volunteer MaiMwana Counsellor and recognise the importance of her advice. More of these women may have decided to use PMTCT services than those not receiving facilitation, and will therefore be in a better position to make informed choices about infant feeding and family planning based on knowledge of their HIV status. Conversely, individual visits made by volunteers to women in their homes may serve to reinforce messages and issues arising from women’s group discussions. after birth by trained interviewers. Interviewers will administer one-month and six-month post-partum interviews to collect detailed information about demo- graphic characteristics, maternity history, health-seeking behaviours, care behaviours and maternal and infant morbidity. To assess the impact of the interventions on growth and nutrition, women and infants will be visited by Health Surveillance Assistants (HSAs) at one-month and seven-months to collect anthropometric and biodata. Infant weight and height and mother’s mid-upper arm circumference will be measured, and blood spots taken from infant heel pricks will be tested for haemoglobin levels using a Haemocue machine. Six HSAs have been recruited and have received extensive training according to Malawi government guidelines in theoretical and practical aspects of blood spot collection by the Com- munity Health Sciences Unit (CHSU) technicians. The HSAs will also be supervised by CHSU technicians quarterly and attend full week-long six-monthly refresher trainings. Data collection Data will be collected in two phases; baseline data dur- ing intervention development, and prospective data dur- ing intervention implementation. The baseline phase was completed in 2004. Formative qualitative data were collected through semi-structured interviews and focus groups. These data were collected with the specific pur- pose of: a) exploring current care practices to help to develop the structured questionnaires and interviews; and b) exploring the aims, setting, target population, methods and resources of the interventions to assist in their development. During the baseline data collection phase, the 692 study villages were mapped, each house- hold enumerated, and a census was done in order to collect basic socioeconomic and demographic data about household members. A list of all female residents aged between 10 and 49 years was produced. Impact evaluation To assess the impact of the interventions on mortality, all WCBA will be visited monthly to identify pregnan- cies and births, as well as neonatal, infant and maternal deaths. WCBA will be visited by trained enumerators once per month, and events recorded in a register hold- ing an up-to-date list of all women in the cluster (gener- ated from the baseline survey, plus new residents). One enumerator will visit all WCBA in one cluster. All deaths of infants and women will be followed up by a supervisor who will verify the death and conduct a ver- bal autopsy interview between two and six weeks after the death. This interview will help to elicit the causes and contributing factors of the deaths [41]. There are five supervisors, each based at a nodal office. Process evaluation An integrated process evaluation will collect data on the key factors that may mediate the impact of the interven- tions in order to understand why they work or fail to work, and how different contextual factors influence their success. This will include collecting information on the context in which the interventions are being imple- mented, the mechanism through which the interventions are working, and the proximal outcomes of the interven- tions. On the basis of this information, hypotheses will be developed and, where possible, tested to explain and better understand the impact of the interventions. The data will be collected, using predominantly qualitative methods such as key informant interviews, focus group discussions and observations. A range of different respondents will be consulted, including members of intervention and control communities, members of women’s groups and women who have been counselled, key community, district and national informants, MaiM- wana staff, and health facility staff. Prospective data relevant to the evaluation of the two interventions will be collected in three ways - impact, process and economic. Economic evaluation All inputs will be audited and cost-effectiveness analysis will be carried out in order to assess the replicability and scalability of the interventions, and the potential for them to be adopted as larger scale public health inter- ventions in Malawi. Full costs will include start-up and running costs for both interventions, and will be col- lected through the project accounting systems. In addi- tion to financial costs, economic costs will be estimated, valuing resources at their “opportunity cost”, or value in their best alternative use (including time, resource use and donated items) [42]. We will estimate the cost per maternal, infant, neonatal and perinatal death averted To assess the impact of the interventions on morbid- ity, care practices and behaviours, women who are iden- tified as pregnant will be followed up until 6 months Page 12 of 15 Page 12 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 checker (NDC) based at one of the five nodal offices. The second check will be done by a team of two data checkers (DC) based at the main office. The last stage of data checking will be done at the point of data entry by the four data entry clerks (DEC). Further checks will be carried out internally within the electronic data-handling environment. Data entered into the study databases will be regularly reviewed for inconsistencies and missing information. Lists of women interviewed and key fields to be verified will be produced, such as ID numbers, dates of birth, and reported pregnancies, births or deaths that have received no further follow-up. and the cost per newborn infant exclusively breastfed. We will collect information on the costs associated with monitoring and evaluation, although research costs will not be included in the analysis. Appropriate sensitivity analyses will be used to explore the implication of uncertainty of assumptions. The cost of scaling up the interventions at national level will be estimated in order to explore cost-saving opportunities and to investigate issues of generalisability beyond the trial context and beyond domestic boundaries. and the cost per newborn infant exclusively breastfed. We will collect information on the costs associated with monitoring and evaluation, although research costs will not be included in the analysis. Appropriate sensitivity analyses will be used to explore the implication of uncertainty of assumptions. Quality control O One enumerator per cluster will identify births and deaths, and each event will be cross-checked by one interviewer. Supervisors will make regular field visits to check the quality of work done by enumerators and interviewers and observe some interviews. Each supervi- sor is responsible for between six and ten clusters. Inter- viewers will meet with enumerators weekly in order to check on their work and receive updates on births and deaths in their area. Supervisors will meet with inter- viewers and enumerators fortnightly to check on their work, discuss problems and provide quality control feed- back. A sample of 200 one-month and six-month inter- views has been selected to be independently re-done by the supervisor, in order to be able to estimate recall and interviewer error rates. For residents or respondents who are permanently unavailable, basic information about dates and timings of events is sought from other community members such as friends or neighbours. Dealing with loss to follow-up g p Minimising loss to follow-up is an important aspect of trial conduct. Certain features of this location and popula- tion dynamic need special attention for outcome tracking: a) Residents of Mchinji move seasonally to maximise their access to fertile land during the farming season, both within the district and across international borders into Zambia and Mozambique; b) Residents of Mchinji may go home for delivery and some time after birth (to other villages within Mchinji or to other districts); c) Non- residents may come into Mchinji from other districts for delivery and some time after birth; d) Families may move after a woman’s death, making it difficult to find respon- dents who know the details of what happened; e) High population turnover in trading centres and commercial farm estates; f) Women being busy working in their gardens, or at community gatherings such as funerals and chieftainship ceremonies, making them unavailable for interview; g) Weather conditions making roads impassable and conducting interviews difficult. Qualitative information will be audio recorded after receiving verbal consent from respondents. Data in Chi- chewa will be translated into English by a bilingual speaker. To ensure conceptual, grammatical, and syntac- tical equivalence, translations will be reviewed collabora- tively by the researcher who obtained the data and the translator (both bilingual Chichewa-English speakers), and the lead researcher (English speaker). This team will make decisions about the best terms to use. All data will subsequently be transcribed and imported into a database in MAXqda 2 (VERBI Software version 2). For residents or respondents who are temporarily una- vailable, the main strategy is to keep following up until an outcome is ascertained. All women who have ever lived in the study areas are maintained in the database, and appear every month in the register. Any events (such as pregnancy or birth) that are reported but no further details are known, are selected and lists produced to remind field-workers of the need for follow-up. In most cases this causes delays in getting complete data, though basic data for estimating mortality rates are still available. In recognition of the fact that certain data collected after a long delay will no longer be valid, sections in the ques- tionnaire (such as infant feeding recall) are skipped. Economic evaluation The cost of scaling up the interventions at national level will be estimated in order to explore cost-saving opportunities and to investigate issues of generalisability beyond the trial context and beyond domestic boundaries. Data management All i i d All quantitative data collected will be delivered to the main office for data entry in a relational database man- agement system in Microsoft Access run on a dedicated server and workstations. Each WCBA will be given a unique ID number generated from the cluster, village and household she comes from. All quantitative data from the mortality surveillance, morbidity, care practice and behaviour questionnaires and process evaluation will be linked to the WCBAs through this unique ID. After checking and entry, all questionnaires will be archived in a locked room for future reference. Reducing contamination Quantitative data will be checked in three stages. The first check will be performed after completion of the questionnaire, by the MEO in full and a nodal data Contamination may occur when people from one cluster have contact with people from another. In the rural Page 13 of 15 Page 13 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 time the trial began, even if they move to another clus- ter or out of the study area during the trial period. Primary and secondary outcomes will be compared between intervention and control groups with random effects logistic regression models, taking account of clus- tering. Potential confounding factors will be included in the model, and measures of baseline mortality will be included in order to adjust for any imbalances in rando- misation at the outset. Cluster-level data will be compared using modified t-tests. All estimates will be presented with 95% confidence intervals. villages of Mchinji, there are many opportunities for social mixing. Friends, relatives or neighbours may mix socially, or contact may be made through travel or migration between intervention and control clusters. There might be direct participation of residents from control areas in WG or VMC activities, or more likely, informal discussion of ideas from WG or VMC activities - control area residents may gain some benefit from hearing health messages received by intervention participants. The usual effect of this kind of contamination would be ‘dilution’ of the differences between treatment arms [43]. In order to reduce the possibility of contamination, we opted to use clusters of villages rather than individual vil- lages as the unit of randomisation, thus reducing rates of travel across cluster boundaries [43]. Furthermore, each zone had a defined ‘buffer area’ around the perimeter (figure 2). A population of 3000 in each zone was required to achieve the desired sample size, but rather than selecting villages at random from each zone, only villages at the centre of the zonal area were eligible for inclusion in surveillance and intervention activities. This reduced the possibility of communication between neigh- bouring study villages in intervention and control areas. Data collected from the project both during the baseline phase and the intervention phase mean that we will be able to look at overall changes in outcome indicators over time. Community consultation Verbal and written consent was received from commu- nity leaders after full consultation and discussions. The regional, district and village leaders, and local health and development professionals will have ongoing access to the research programme and will be the first to be briefed on study findings and outcomes through written and verbal reports. Ethical issues Approvals Ethical permission for this study was granted by the Malawi National Health Sciences Research Committee in January 2003 (Ref: MED/4/36/I/167) and the ethics committee of the UCL Institute of Child Health and Great Ormond Street Hospital. It is registered with ISRCTN06477126. Reducing contamination Factors other than the study interventions may influ- ence health indicators seen, such as other mother and child health programs in the area, or positive reporting and the Hawthorne effect [45]. If mother and child health programs are only active within some of the cluster areas then these can be examined separately if necessary. y y Analysis of qualitative data will involve iteratively developing a system of codes and memos jointly by the lead researcher and the researcher who collected the data. This method will seek to develop an analytical framework based on the data by coding and memoing pertinent excerpts that illustrate emerging themes. Sub- sequently, in an iterative process, the researchers will refine their analysis ensuring that the themes that are built up are cross-checked with other data firstly within and then between transcripts so that the validity of emerging explanations is tested and improved. The qua- litative data will also be used to interpret and contextua- lise the quantitative data collected. MAXqda 2 software will be used to facilitate this analysis. Women’s group facilitators and volunteer counsellors are residents of the zone in which they work. This reduces the possibility that they might transfer interven- tion benefits to neighbouring communities. For the WG trial, whilst health messages are discussed in group meetings, it is unlikely that neighbouring control com- munities would spontaneously mobilise themselves with- out the presence of a facilitator. So the purported benefits of community empowerment and social capital are unlikely to spread beyond intervention areas. Interim analyses and stopping rules An independent Data Safety and Monitoring Board (DSMB) will meet several times according to the DAMOCLES statement, [44] to review progress and advise on the conduct of the trial. They will assess com- pliance with the protocol, data quality and complete- ness, recruitment figures, sample size assumptions and ethical considerations. The meetings will not include analysis of outcome data by intervention allocation until completion of the trial. Baseline data will be reviewed to evaluate how well balanced the clusters were after ran- domisation and suggest any adjustments that may need to be made. We do not foresee any adverse effects of community mobilisation or peer counselling, so we do not intend to apply stopping rules. Competing interests Th h d l h The authors declare that they have no competing interests. The authors declare that they have no competing interests. Confidentiality of information All information will remain confidential. Access to infor- mation will be limited to interviewers and their supervi- sors at sites of collection, to auditors and data feeders at the collation point and thence to the senior data manage- ment officers and principal investigators. No analyses or reports will include the names of participants. Author details 1 1Centre for International Health and Development, UCL Institute of Child Health, 30 Guilford St, WC1N 1EH, London, UK. 2Kamuzu Central Hospital, Ministry of Health, Lilongwe, Malawi. 3Baylor College of Medicine Children’s Foundation, Private Bag B-397, Lilongwe, Malawi. 4MaiMwana Project, PO Box 2, Mchinji, Malawi. 5St George’s Hospital NHS Trust, Paediatric Infectious Diseases, Blackshaw Road, London SW17 0BY, UK. 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa. Sustainability and scalability Received: 28 May 2010 Accepted: 17 September 2010 Published: 17 September 2010 Received: 28 May 2010 Accepted: 17 September 2010 Published: 17 September 2010 Received: 28 May 2010 Accepted: 17 September 2010 Published: 17 September 2010 A key objective is to take lessons learned quickly to scale in other districts, through our partners. The Minis- try of Health in Malawi will be involved throughout the implementation of this project. At a local level we will work closely with the district development committees, local community representatives and locally active NGOs. The Mchinji District Health Office will play a key collaborative role. We will also work closely with UNICEF, Malawi and the National AIDS Commission, to implement PMTCT activities. Individual consent Treatment of illness in participating communities The study is designed to test the community effective- ness of two community-level initiatives to reduce mater- nal, infant, neonatal and perinatal mortality in rural Africa. Encouraging community action for maternal and newborn care alone will not grant success. For health promotion interventions to work, the supply side of health care services must reach a minimum standard. g The trial funding was initially provided by Saving Newborn Lives with later contributions from the UK Department for International Development, the References 1. Countdown Coverage Writing Group, Countdown to 2015 Core Group, Bryce J, Daelmans B, Dwivedi A, Fauveau V, Lawn JE, Mason E, Newby H, Shankar A, et al: Countdown to 2015 for maternal, newborn, and child survival: the 2008 report on tracking coverage of interventions. Lancet 2008, 371:1247-1258. 2. National Statistical Office, Malawi, Macro ORC: Malawi Demographic and Health Survey, 2004. Malawi Demographic and Health Survey, 2004 2005, 454, City 454. 2. National Statistical Office, Malawi, Macro ORC: Malawi Demographic and Health Survey, 2004. Malawi Demographic and Health Survey, 2004 2005, 454, City 454. 3. Kongnyuy EJ, Mlava G, van den Broek N: Facility-based maternal death review in three districts in the central region of Malawi: an analysis of causes and characteristics of maternal deaths. Women’s health issues: official publication of the Jacobs Institute of Women’s Health 2009, 19:14-20. 3. Kongnyuy EJ, Mlava G, van den Broek N: Facility-based maternal death review in three districts in the central region of Malawi: an analysis of causes and characteristics of maternal deaths. Women’s health issues: official publication of the Jacobs Institute of Women’s Health 2009, 19:14-20. 4. Bland RM, Rollins NC, Coovadia HM, Coutsoudis A, Newell ML: Infant feeding counselling for HIV-infected and uninfected women: appropriateness of choice and practice. Bull World Health Organ 2007, 85:289-296. Community-based team members have been recruited locally and carry out their activities in their home areas. We will attempt to maintain intervention costs to a minimum so that they can be adopted by the Ministry of Health. 4. Bland RM, Rollins NC, Coovadia HM, Coutsoudis A, Newell ML: Infant feeding counselling for HIV-infected and uninfected women: appropriateness of choice and practice. Bull World Health Organ 2007, 85:289-296. 5. WHO: New WHO Recommendations: Infant feeding in the context of HIV. Book New WHO Recommendations: Infant feeding in the context of HIV 2009, 1-4, City 1-4. 5. WHO: New WHO Recommendations: Infant feeding in the context of HIV. Book New WHO Recommendations: Infant feeding in the context of HIV 2009, 1-4, City 1-4. Control areas will be the first beneficiaries of scale-up if either of the interventions prove to have a positive impact. 6. Morrow AL, Guerrero ML, Shults J, Calva JJ, Lutter C, Bravo J, Ruiz- Palacios G, Morrow RC, Butterfoss FD: Efficacy of home-based peer counselling to promote exclusive breastfeeding: a randomised controlled trial. Lancet 1999, 353:1226-1231. Authors’ contributions CM is the project coordinator, contributed to the design of the study, will be responsible for the management of the trial, and will participate in the analysis and interpretation of data. SL contributed to the design of the study, will coordinate the data collection and lead the analysis and wrote the first draft of the study protocol. PK, MLN, DO and AC contributed to the design of the study and will participate in the analysis and interpretation. TP, MR, HC, FM, AM contributed to the design of the interventions, will be responsible for their implementation, and will participate in the analysis and interpretation of data. SV contributed to the design of the infant feeding interventions and health service strengthening. CM is the director and TP the project manager of MaiMwana, contributed to the design of the study, and will have overall responsibility for the trial in Malawi. AC is the director of the UCL Centre for International Health and Development, contributed to the design of the study, and will have overall responsibility for UK partner contributions. MR and FM contributed to the design of the interventions and the process evaluation, and will participate in the analysis and interpretation of data. AC, SL, CM, PK, MLN, MR, SV and DO obtained grant funding. All authors contributed to critique and modification of the manuscript. When the study workers identify minor or chronic ill- ness in mothers or infants in either intervention or con- trol areas they will encourage referral to the appropriate health facility. Confidentiality of information Individual consent Data from the trial will be analysed by intention to treat at both cluster and participant levels. Participants will be assigned to the cluster they were resident in at the Before each instance of data collection, the process and advantages and disadvantages of taking part will be Page 14 of 15 Page 14 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Wellcome Trust, National AIDS Commission, Malawi and UNICEF, Malawi. We thank the many individuals in Mchinji District without whom the study would not have been possible. We particularly wish to thank members of all communities in which the project is working; the MaiMwana office and field staff involved in running, monitoring and evaluating the interventions; the District Health Officers and District Health Management Team for their ongoing support, the Mchinji District Executive Committee, traditional leaders and other non-governmental organizations working in the district. Wellcome Trust, National AIDS Commission, Malawi and UNICEF, Malawi. We thank the many individuals in Mchinji District without whom the study would not have been possible. We particularly wish to thank members of all communities in which the project is working; the MaiMwana office and field staff involved in running, monitoring and evaluating the interventions; the District Health Officers and District Health Management Team for their ongoing support, the Mchinji District Executive Committee, traditional leaders and other non-governmental organizations working in the district. explained to all participants. Verbal consent will be obtained, and participants informed that they can stop taking part at any time. Participation in intervention activities is voluntary, and women may choose to start or stop as they wish. Benefits to the control communities The study is designed to test the community effective- ness of two community-level initiatives to reduce mater- nal, infant, neonatal and perinatal mortality in rural Africa. Encouraging community action for maternal and newborn care alone will not grant success. For health promotion interventions to work, the supply side of health care services must reach a minimum standard. The study team considers it unethical to strengthen ser- vices only in intervention and not control areas. Control communities will benefit from low-cost improvements in equipment, supplies and training at all primary level facilities in the district in intervention and control areas. Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 8. Bhandari N, Bahl R, Mazumdar S, Martines J, Black RE, Bhan MK, Group IFS: Effect of community-based promotion of exclusive breastfeeding on diarrhoeal illness and growth: a cluster randomised controlled trial. Lancet 2003, 361:1418-1423. 30. Haider R, Ashworth A, Kabir I, Huttly SR: Effect of community-based peer counsellors on exclusive breastfeeding practices in Dhaka, Bangladesh: a randomised controlled trial [see commments]. Lancet 2000, 356:1643-1647. 9. Waltensperger K: Cultural beliefs, societal attitudes, and household practices related to the care of newborns. Malawi: Save the Children 2001. 31. Quinn VJ, Guyon AB, Schubert JW, Stone-Jiménez M, Hainsworth MD, Martin LH: Improving breastfeeding practices on a broad scale at the community level: success stories from Africa and Latin America. J Hum Lact 2005, 21:345-354. 10. Haider R, Islam A, Kabir I, Habte D: Early complementary feeding is associated with low nutritional status of young infants recovering from diarrhoea. J Trop Pediatr 1996, 42:170-172. 32. Kirkwood BR, Manu A, Tawiah-Agyemang C, Ten Asbroek G, Gyan T, Weobong B, Lewandowski RE, Soremekun S, Danso S, Pitt C, Hanson K, Owusu-Agyei S, Hill Z: Newhints cluster randomised trial to evaluate the impact on neonatal mortality in rural Ghana of routine home visits to provide a package of essential newborn care interventions in the third trimester of pregnancy and the first week of life: trial protocol. Trials 2010, 11:58. 11. Kalanda BF, Verhoeff FH, Brabin BJ: Breast and complementary feeding practices in relation to morbidity and growth in Malawian infants. European journal of clinical nutrition 2006, 60:401-407. 12. Nakiyingi JS, Bracher M, Whitworth JA, Ruberantwari A, Busingye J, Mbulaiteye SM, Zaba B: Child survival in relation to mother’s HIV infection and survival: evidence from a Ugandan cohort study. AIDS 2003, 17:1827-1834. 33. National Statistical Office, Malawi: 1998 national population and housing census: analytical report.. 13. Newell ML, Brahmbhatt H, Ghys PD: Child mortality and HIV infection in Africa: a review. AIDS 2004, 18(Suppl 2):S27-34. 34. National Statistical Office, Malawi, UNICEF Malawi: Multiple Indicator Cluster Survey. 2006. 35. McLeroy KR, Norton BL, Kegler MC, Burdine JN, Sumaya CV: Community- based interventions. Am J Public Health 2003, 93:529-533. 14. Taha TE, Kumwenda NI, Gibbons A, Broadhead RL, Fiscus S, Lema V, Liomba G, Nkhoma C, Miotti PG, Hoover DR: Short postexposure prophylaxis in newborn babies to reduce mother-to-child transmission of HIV-1: NVAZ randomised clinical trial. Lancet 2003, 362:1171-1177. 36. Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 Howard-Grabman L: The Warmi Project: A participatory approach to improve maternal and neonatal health. An implementor’s manual MotherCare/USAID/ SCF 2002. of HIV-1: NVAZ randomised clinical trial. Lancet 2003, 362:1171-117 15. Passmore R: The declaration of Alma-Ata and the future of primary care. Lancet 1979, 2:1005-1008. 37. Morrison J, Tamang S, Mesko N, Osrin D, Shrestha B, Manandhar M, Manandhar D, Standing H, Costello A: Women’s health groups to improve perinatal care in rural Nepal. BMC pregnancy and childbirth 2005, 5:6. 16. Rifkin S: Lessons from community participation in health programmes. Health Policy and Planning 1986, 1:240-249. 17. Rifkin S: Community participation in maternal and child health/family planning programmes: an analysis based on case study material. Community participation in maternal and child health/family planning programmes: an analysis based on case study material WHO 1990. 38. National Statistical Office, Malawi, Macro ORC MEASURE/DHS+: Malawi Demographic and Health Survey, 2000. Malawi Demographic and Health Survey, 2000 2001, 327. y 39. Hayes RJ, Bennett S: Simple sample size calculation for cluster- randomized trials. International journal of epidemiology 1999, 28:319-326. 18. Rifkin SB, Muller F, Bichmann W: Primary health care: on measuring participation. Soc Sci Med 1988, 26:931-940. 40. Hayes R, Mosha F, Nicoll A, Grosskurth H, Newell J, Todd J, Killewo J, Rugemalila J, Mabey D: A community trial of the impact of improved sexually transmitted disease treatment on the HIV epidemic in rural Tanzania: 1. Design. AIDS 1995, 9:919-926. 19. Rosato M, Laverack G, Grabman LH, Tripathy P, Nair N, Mwansambo C, Azad K, Morrison J, Bhutta Z, Perry H, et al: Community participation: lessons for maternal, newborn, and child health. Lancet 2008, 372:962-971. 41. Fauveau V: Assessing probable causes of death without death registration or certificates: a new science? Bull World Health Organ 2006, 84:246-247. 20. Bolam A, Manandhar DS, Shrestha P, Ellis M, Costello AM: The effects of postnatal health education for mothers on infant care and family planning practices in Nepal: a randomised controlled trial. Bmj 1998, 316:805-811. 42. Mugford M, Hutton G, Fox-Rushby J: Methods for economic evaluation alongside a multicentre trial in developing countries: a case study from the WHO Antenatal Care Randomised Controlled Trial. Paediatric and perinatal epidemiology 1998, 12(Suppl 2):75-97. 21. Gillies P: Effectiveness of alliances and partnerships for health promotion. Health Promotion International 1998, 13:99-120. 22. Campbell C, Mzaidume Y: How can HIV be prevented in South Africa? A social perspective. Bmj 2002, 324:229-232. 44. Acknowledgements Th i l f di 7. Morrow M: Breastfeeding in Vietnam: poverty, tradition, and economic transition. J Hum Lact 1996, 12:97-103. The trial funding was initially provided by Saving Newborn Lives with later contributions from the UK Department for International Development, the Page 15 of 15 Lewycka et al. Trials 2010, 11:88 http://www.trialsjournal.com/content/11/1/88 DAMOCLES Study Group NHTAP: A proposed charter for clinical trial data monitoring committees: helping them to do their job well. Lancet 2005, 365:711-722. 44. DAMOCLES Study Group NHTAP: A proposed charter for clinical trial data monitoring committees: helping them to do their job well. Lancet 2005, 365:711-722. 23. Campbell C, Williams B: Beyond the biomedical and behavioural: towards an integrated approach to HIV prevention in the southern African mining industry. Soc Sci Med 1999, 48:1625-1639. 45. Roethlisberger F, Dickson WJ: Management and the Worker: an Account of a Research Program Conducted by the Western Electric Company, Chicago Cambridge: Harvard University Press 1939. 45. Roethlisberger F, Dickson WJ: Management and the Worker: an Account of a Research Program Conducted by the Western Electric Company, Chicago Cambridge: Harvard University Press 1939. 24. Howard-Grabman L: The “autodiagnosis": a methodology to facilitate the maternal and neonatal health problem identification and prioritization in women’s groups in rural Bolivia. MotherCare/John Snow Inc 1993. doi:10.1186/1745-6215-11-88 Cite this article as: Lewycka et al.: A cluster randomised controlled trial of the community effectiveness of two interventions in rural Malawi to improve health care and to reduce maternal, newborn and infant mortality. Trials 2010 11:88. 25. Howard-Grabman L: “Planning together": a methodology to facilitate the development of strategies and actions to address priority maternal and neonatal health problems in rural Bolivian communities. MotherCare/John Snow Inc 1993. 26. O’Rourke K, Howard-Grabman L, Seoane G: Impact of community organization of women on perinatal outcomes in rural Bolivia. Rev Panam Salud Publica 1998, 3:9-14. 27. Manandhar DS, Osrin D, Shrestha BP, Mesko N, Morrison J, Tumbahangphe KM, Tamang S, Thapa S, Shrestha D, Thapa B, et al: Effect of a participatory intervention with women’s groups on birth outcomes in Nepal: cluster-randomised controlled trial. Lancet 2004, 364:970-979. 28. Tripathy P, Nair N, Barnett S, Mahapatra R, Borghi J, Rath S, Rath S, Gope R, Mahto D, Sinha R, et al: Effect of a participatory intervention with women’s groups on birth outcomes and maternal depression in Jharkhand and Orissa, India: a cluster-randomised controlled trial. Lancet 2010, 375:1182-1192. 29. Azad K, Barnett S, Banerjee B, Shaha S, Khan KS, Rego AR, Barua S, Flatman D, Pagel C, Prost A, et al: Effect of scaling up women’s groups on birth outcomes in three rural districts in Bangladesh: a cluster- randomised controlled trial. Lancet 2010, 375:1193-1202.
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PERFORMANCE EVALUATION OF BUILDING FAÇADE RECONSTRUCTION FROM UAS IMAGERY
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1. INTRODUCTION features in buildings (Ajayi, 2018). This is primarily due to the availability and ease of use that UASs systems have and improvements in the methodology to refine image quality (Eschmann et al., 2012; Adams et al., 2014). Despite the promising results that previous studies have shown, there is still an apparent lack of studies that assess the performance of these systems (Peppa et al., 2019). A similar lack of studies has also focused on UASs systems using cloud-to-cloud (C2C) point accuracy to assess these systems (Martinez et al., 2021). For these reasons, it is crucial to perform an accuracy assessment of UAS collected data using C2C point accuracy. features in buildings (Ajayi, 2018). This is primarily due to the availability and ease of use that UASs systems have and improvements in the methodology to refine image quality (Eschmann et al., 2012; Adams et al., 2014). Despite the promising results that previous studies have shown, there is still an apparent lack of studies that assess the performance of these systems (Peppa et al., 2019). A similar lack of studies has also focused on UASs systems using cloud-to-cloud (C2C) point accuracy to assess these systems (Martinez et al., 2021). For these reasons, it is crucial to perform an accuracy assessment of UAS collected data using C2C point accuracy. Photogrammetry is the process in which information is obtained regarding objects' properties without the need for physical contact (Mikhail, 2001). Current photogrammetric methods are usually divided into two distinct groups: terrestrial photogrammetry (Aber et al., 2010). While this method is useful in gathering information at a distance, terrestrial photogrammetry still requires someone to be on-site, potentially exposed to any hazards present on-site, and potentially having to deal with unstable ground that could also affect image quality (Erlandson and Veress, 1974). The more recent type of photogrammetry is aerial photogrammetry. In this study, a building was reconstructed using a UAS. Three independent flights were performed involving a different flying height and camera angle. To evaluate the performance of building façade reconstruction from UAS imagery the building was scanned using a Terrestrial Laser Scanner (TLS). Subsequently, the UAS imagery and TLS data was processed for comparison. The best results of the mean, median, and standard deviation of the C2C were 0.023, 0.014, and 0.023 meters, respectively, with a flying height of 150’ and an orbit of 80’. 2. MATERIALS AND METHODS The procedure used to evaluate the photogrammetric mapping accuracy of building façade reconstruction from UAS imagery is summarized in Figure 1. PERFORMANCE EVALUATION OF BUILDING FAÇADE RECONSTRUCTION FROM UAS IMAGERY Edward R. Clay1, Kara S. Lee1, Sheng Tan1, Long Ngo Hoang Truong2, Omar E. Mora1*, Wen Cheng1 1Civil Engineering Department, California State Polytechnic University, Pomona, USA – (erclay, karalee, shengtan, oemora, and wcheng)@cpp.edu 2Department of Computer Science, California State Polytechnic University, Pomona, USA – lntruong@cpp.edu KEY WORDS: Unmanned Aircraft System (UAS), Ground Control Point (GCP), Photogrammetry, Point Cloud, Cloud-to-Cloud (C2C), Accuracy, Reconstruction. ABSTRACT: Unmanned Aircraft Systems (UASs) coupled with low-cost cameras are rapidly becoming a cost-effective alternative for surveying and mapping, particularly for civil, construction, and environmental engineering applications. The proliferation of UASs provide unique opportunities to map and model surfaces at unprecedented spatial and temporal resolutions. Although, UASs have been extensively evaluated for mapping and modeling, limited research has been performed on assessing the accuracy of UAS imagery for building façade reconstruction. In this study, a performance evaluation of UAS mapping for building façade reconstruction is performed. Our results suggest that there are many aspects that impact the accuracy of UAS photogrammetry for building façade reconstruction. In specific, the texture, contrast, and subtle details influence the generated point cloud, thus complicating the building façade reconstruction. The best results were obtained by strategizing the flying height and camera angle; where, the mean, median, and standard deviation for the cloud-to-cloud (C2C) absolute distances were 0.023, 0.014, and 0.023 meters, respectively, by applying a flying height of 150’ with an orbit at 80’. Therefore, it may be concluded that UAS photogrammetric mapping can meet sub-decimeter accuracy for building façade reconstruction, if proper planning, data collection and processing procedures are followed. 1. INTRODUCTION Therefore, it may be concluded that the use of UAS photogrammetric mapping for building façade reconstruction can meet sub-decimeter accuracy as long as proper planning, data collection, and processing procedures are followed. As the name suggests, aerial photogrammetry is taking images from an aerial point of view. Originally, this included taking photographs from airplanes which allow for larger expanses of land to be recorded in short amounts of time; however, this method has been flawed due to the need for adequate elevation, preventing the ability to obtain more detailed photos of specific structures (Sowmya and Trinder, 2000). In more recent years, aerial photogrammetry has become more popular due to the improvements and availability in Unmanned Aircraft Systems (UASs). UAS, paired with different vision-based systems and computer vision algorithms, provide opportunities to collect, process, and reconstruct the three-dimensional (3D) position of surface features (Colomina and Molina, 2014). UASs combined with these vision-based systems provide distinct advantages for noncontact, high temporal, and spatial resolution data (Rakha and Gorodetsky, 2018; Mora et al., 2019). For these reasons, UASs have been utilized in determining the elevation of road runoff (Díaz-Vilariño et al., 2016), glaciological measurements (Whitehead et al., 2013), as well as georeferencing (Gabrlik, 2015), to name a few applications. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual 2.5 Terrestrial Laser Scanning A Trimble TX8 laser scanner was used to capture the 3D point cloud of the building, which served as the ground truth for comparing the UAS point clouds from the three flights. This survey was performed by scanning the parking lot at six scan stations and georeferenced using spheres placed strategically to be visible from at minimum two scan stations. The spheres were placed by using a 2 m rod and bipod at each sphere station. Registration of the six Terrestrial Laser Scanning (TLS) point clouds was performed using Trimble RealWorks software. Upon completing the registration, a visual inspection was performed to ensure proper registration. Subsequently, the point clouds were segmented and filtered as shown in Figure 2. The final processing steps are similar to those from the UAS point clouds, which consist of the preparation of the point clouds to be imported into CloudCompare, where the TLS point cloud will be evaluated against the three UAS point clouds. Figure 2. Filtered building façade used for this study. Figure 2. Filtered building façade used for this study. were Trimble R10 systems, while the total station was a Trimble S7. were Trimble R10 systems, while the total station was a Trimble S7. Figure 1. Flowchart of the Methodology. 2.2 Image Acquisition The images were acquired from a Phantom 4 Pro v2.0. The UAS was equipped with a 20 megapixels camera sensor (5,472 × 3,648) and a mechanical shutter. The shutter speed was adjusted based on lighting condition, UAS speed, and flight altitude at flight time to minimize image blurring. The mission was carried out autonomously using the software DroneDeploy, where a total of three different flights were performed. Flight 1, 2, and 3 had a flying height of 30, 46, and 46 meters, respectively. In addition, flight 3 was flown following an orbital path around the building at a flying altitude of 24 meters. The forward and side overlap for all flights was 80 and 70 %, respectively. 2.6 Cloud-to-Cloud Comparison The point cloud analysis compared the UAS and TLS point clouds. It is important to note that performing a cloud-to-cloud (C2C) comparison is challenging due to the irregular point spacing from the UAS and TLS point cloud datasets, and no commonly recognized method currently exists for assessing point cloud accuracy (Mora et al., 2019) related to building façade reconstruction. For these reasons, we chose to perform a Cloud-to-Cloud (C2C) absolute distance comparison in CloudCompare by computing the nearest neighbor distance between the reference (i.e., ground truth/TLS point cloud) and the compared cloud (i.e., UAS point cloud). In this approach, the Euclidean distance is computed between each point in the compared cloud with the nearest point in the reference cloud (Mora et al., 2019). The analysis involved both a tabular summary and visualization to reveal spatial patterns between the two-point clouds. It is noted that only a portion of the north, south, east, and west wall was chosen to evaluate the spatial trends within the building. Each section evaluated (outlined in red in Figure 3) was selected due to their planar geometry. Flight 1, 2, and 3 will be referred to as Test 1, 2, and 3, respectively, herein. 2.4 Photogrammetric Processing The photogrammetric process was carried out using Bentley ContextCapture, update 17 - v10.17.0.39. This photogrammetric software is based on the structure-from-motion methodology. The workflow follows a four-step process. The first step is to import the imagery and GCPs. The second step is to perform the photo ID to identify all GCPs/checkpoints in all corresponding images. The third step is to align the images by automatic feature identification and matching. The software simultaneously estimates both the internal and external parameters, including radial and tangential distortion. The result of this step is the camera position corresponding to each image, the internal camera calibration parameters, and the 3D coordinates of a sparse point cloud of the terrain. The final step is to create the dense point cloud and apply texture to the mesh. In general, the bundle adjustment can be carried out using a minimum of three GCPs; however, better results are obtained using more GCPs, which is recommended to achieve the best accuracy. Figure 1. Flowchart of the Methodology. Figure 2. Filtered building façade used for this study. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. 2.1 Study Area The study area is a rectangular building located in Ontario, California, United States of America (Latitude: 34° 04′ 22.90” N, Longitude: 117° 33′ 44.20” W). This building was chosen for its unique architectural features, in which its walls are relatively flat with subtle texture. The amount of vegetation occluding the Since the mid-2000s, there has been a significant step towards utilizing photogeometric methods to measure critical features on buildings (Shashi and Jain, 2007; Grussenmeyer et al., 2008; Galantucci and Fatiguso, 2019). Much due to the advancements in UASs, these systems have also seen use in mapping key 65 The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual building is minimal and despite its presence it can be filtered as shown in Figure 2. 2.3 Ground Control Points Prior to the image acquisition, six Ground Control Points (GCPs) were set around the project site to be used in the aerotriangulation. The three-dimensional coordinates of the GCPs were measured first with a Global Navigation Satellite System (GNSS) rover in Real-Time Kinematic (RTK) mode, with the base station located within the project site. Subsequently, the GCPs were measured with a total station for verification. The difference when comparing the traverse between the GNSS RTK and total station measurements was observed to have a total closure error of 0.012 meters and 00° 00’ 02”. The horizontal coordinates were processed to the California State Plane Coordinate System Zone 5, while the vertical was in the North American Vertical Datum of 1988. The base and rover 66 The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual Figure 3. Building façade areas to be compared between UAS and TLS point clouds are outlined in red for each wall. appears to perform better. This can be attributed to the clarity of the scans that test 3 produces, as shown in Figure 3. In Figure 3, the north and south walls have some gaps, whereas these same walls in test 2 do not have gaps in the data. Since the primary change between each test is the flying height, the angles in which the UAS imagery is acquired from may produce some levels of light distortion that could have affected the point cloud (Mancini et al., 2013), especially for a light texture less wall. Another critical factor that could have affected the results is the time of day at which each flight was performed. Several previous studies have speculated that light levels and angle of reflections have adverse effects upon the cloud point accuracy (Ishida, 2017; Álvares et al., 2018). For this reason, it is suggested that future research also consider this factor when performing image acquisition from a UAS. 3. RESULTS The results are summarized in Table 1 and are shown as box plots in Figure 4 for all three tests along the north, south, east, and west walls. To evaluate the performance of each test, the overall mean, median, standard deviation, minimum, and maximum C2C distances are considered. The size of the area of interest, is expected to be a representative sample of the building façade planar geometry. Despite taking careful consideration to identify areas of interest along each wall, not every test produced clear results. This is apparent in the south wall for test 1 and 2 shown in Figure 5. A reason may be due to a “rip” in the scans present in tests 1 and 2, where there are excessive light levels (Gaulton and Malthus, 2010). The extreme light levels can also be seen in test 3 for the north and east walls and the laser scans of both the south and eastern walls. Another potential explanation is a combination of the area of interest and its proximity to windows, as it has been suggested to affect point cloud accuracy in previous studies (Mian et al., 2014; Koivumäki et al., 2021). For these reasons, the south wall area of interest for test 1 and test 2 are limited as shown in Table 1. This study aims to provide further insight into flying height and point cloud accuracy for building façade reconstruction. Using a TLS as a baseline, it is possible to determine the level of accuracy that can be obtained compared to a pre-established method that has historically shown high accuracy levels (Hackenberg et al., 2014; Li et al., 2020). In addition, this study aims to determine the optimal flying height that will lead to results with higher levels of accuracy and consistency. Test 3 provided a mean, median, and standard deviation of 0.023, 0.014, and 0.023 meters, respectively, outperforming both tests 1 and test 2. With these results, it is suggested that the UAS image acquisition with a flying height of 46 meters and an orbit of 24 meters produces favorable results and should be looked into further when conducting C2C analysis. The box plots in Figure 4 comprise information related to the mean and standard deviations along all four walls for the three tests. 2.3 Ground Control Points Test 1 Wall Mean (m) Median (m) STD (m) Min (m) Max (m) North 0.016 0.013 0.013 0.000 0.061 South 0.514 0.535 0.264 0.000 1.014 East 0.050 0.043 0.040 0.000 0.212 West 0.027 0.021 0.022 0.000 0.094 Total 0.152 0.153 0.085 0.000 0.345 Test 2 North 0.016 0.013 0.013 0.000 0.061 South 0.060 0.050 0.042 0.000 0.137 East 0.014 0.011 0.013 0.000 0.118 West 0.021 0.012 0.022 0.000 0.123 Total 0.028 0.021 0.022 0.000 0.110 Test 3 North 0.028 0.017 0.026 0.000 0.100 South 0.024 0.015 0.021 0.000 0.086 East 0.033 0.020 0.039 0.000 0.220 West 0.007 0.005 0.006 0.000 0.046 Total 0.023 0.014 0.023 0.000 0.113 Table 1. Summary of C2C absolute distance for each test along each wall. Figure 3. Building façade areas to be compared between UAS and TLS point clouds are outlined in red for each wall. Figure 3. Building façade areas to be compared between UAS and TLS point clouds are outlined in red for each wall. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. ACKNOWLEDGEMENTS The authors want to thank the WestLAND Group, Inc. for helping with the data collection for this study. Figure 5. C2C results for test 1, 2, and 3 along the north, south, east, and west walls. 3. RESULTS Reviewing Table 1 and comparing the results with Figure 4, it appears that test 3 performs better overall compared to either test 1 or 2. This conclusion is apparent in the south and west walls, as test 3 has a significantly lower error than its counterparts. Unfortunately, in the north and south walls, test 2 67 The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual Figure 4. Box plots of C2C absolute distance for each test along each wall. Figure 4. Box plots of C2C absolute distance for each test along each wall. 4. CONCLUSIONS Figure 5. C2C results for test 1, 2, and 3 along the north, south, east, and west walls. As a result of this study, the need for a more comprehensive study regarding the UAS flying height in which image acquisition is performed for building façade reconstruction is needed. The test that provided the best results in terms of C2C absolute distance is test 3, in which the UAS was flown at the height of 46 meters and an orbit of 24 meters. As this height changes, the quality of each UAS point cloud will vary; however, other factors outside of flying height will also influence the accuracy of the point clouds. The time of day is likely to affect the quality of each point cloud with the subsequent angle of the sun. The light levels are also a potential factor in the quality of UAS point clouds, which may or may not be amplified by the flying height of the UAS. For these reasons, this study considers these variables when evaluating the performance of building façade reconstruction from UAS imagery. In this study, the best results were obtained by determining which test yielded the lowest C2C absolute distance. Our results showed that test 3 yielded the lowest overall error with a mean, median, and standard deviation of 0.023, 0.014, and 0.023 meters, respectively, meeting sub-decimeter accuracy. Based on these results, UAS façade reconstruction is not only possible but can be preferred if traditional methods are not feasible as long as proper planning, data collection, and processing procedures are followed. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. Assessment of Lidar Point Cloud from NAIP/3DEP Pilot Project. Remote Sensing, 12(12), 1974. Assessment of Lidar Point Cloud from NAIP/3DEP Pilot Project. Remote Sensing, 12(12), 1974. Adams, S. M., Levitan, M. L., & Friedland, C. J. (2014). High resolution imagery collection for post-disaster studies utilizing unmanned aircraft systems (UAS). Photogrammetric Engineering & Remote Sensing, 80(12), 1161-1168. Koivumäki, P., Steinböck, G., & Haneda, K. (2021). Impacts of point cloud modeling on the accuracy of ray-based multipath propagation simulations. IEEE Transactions on Antennas and Propagation. Ajayi, O. G., Palmer, M., & Salubi, A. A. (2018). Modelling farmland topography for suitable site selection of dam construction using unmanned aerial vehicle (UAV) photogrammetry. Remote Sensing Applications: Society and Environment, 11, 220-230. Li, Y., Su, Y., Zhao, X., Yang, M., Hu, T., Zhang, J., ... & Guo, Q. (2020). Retrieval of tree branch architecture attributes from terrestrial laser scan data using a laplacian algorithm. Agricultural and Forest Meteorology, 284, 107874. Álvares, J. S., Costa, D. B., & de Melo, R. R. S. (2018). Exploratory study of using unmanned aerial system imagery for construction site 3D mapping. Construction Innovation. Mancini, F., Dubbini, M., Gattelli, M., Stecchi, F., Fabbri, S., & Gabbianelli, G. (2013). Using unmanned aerial vehicles (UAV) for high-resolution reconstruction of topography: The structure from motion approach on coastal environments. Remote sensing, 5(12), 6880-6898. Colomina, I., & Molina, P. (2014). Unmanned aerial systems for photogrammetry and remote sensing: A review. ISPRS Journal of photogrammetry and remote sensing, 92, 79-97. Díaz-Vilariño, L., González-Jorge, H., Martínez-Sánchez, J., Bueno, M., & Arias, P. (2016). Determining the limits of unmanned aerial photogrammetry for the evaluation of road runoff. Measurement, 85, 132-141. Martinez, J. G., Albeaino, G., Gheisari, M., Volkmann, W., & Alarcón, L. F. (2021). UAS Point Cloud Accuracy Assessment Using Structure from Motion–Based Photogrammetry and PPK Georeferencing Technique for Building Surveying Applications. Journal of Computing in Civil Engineering, 35(1), 05020004. Erlandson, J. P., & Veress, S. A. (1974). Contemporary problems in terrestrial photogrammetry. Photogrammetric Engineering, 40(9), 1079-1085. Mian, S. H., Mannan, M. A., & Al-Ahmari, A. M. (2014). The influence of surface topology on the quality of the point cloud data acquired with laser line scanning probe. Sensor Review. Eschmann, C., Kuo, C. M., Kuo, C. H., & Boller, C. (2012). Unmanned aircraft systems for remote building inspection and monitoring. Mikhail, E. M., Bethel, J. S., & McGlone, J. C. (2001). Introduction to modern photogrammetry. New York, 19. Gabrlik, P. (2015). REFERENCES Aber, J. S., Marzolff, I., & Ries, J. (2010). Small-format aerial photography: Principles, techniques and geoscience applications. Elsevier. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. 68 The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume XLVI-M-2-2022 ASPRS 2022 Annual Conference, 6–8 February & 21–25 March 2022, Denver, Colorado, USA & virtual This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. Assessment of Lidar Point Cloud from NAIP/3DEP Pilot Project. Remote Sensing, 12(12), 1974. The use of direct georeferencing in aerial photogrammetry with micro UAV. IFAC-PapersOnLine, 48(4), 380-385. Mora, O.E., Suleiman, A., Chen, J., Pluta, D., Okubo, M.H. and Josenhans, R., 2019. Comparing sUAS Photogrammetrically- Derived Point Clouds with GNSS Measurements and Terrestrial Laser Scanning for Topographic Mapping. Drones, 3(3), p.64. Galantucci, R. A., & Fatiguso, F. (2019). Advanced damage detection techniques in historical buildings using digital photogrammetry and 3D surface anlysis. Journal of Cultural Heritage, 36, 51-62. Peppa, M. V., Hall, J., Goodyear, J., & Mills, J. P. (2019). PHOTOGRAMMETRIC ASSESSMENT AND COMPARISON OF DJI PHANTOM 4 PRO AND PHANTOM 4 RTK SMALL UNMANNED AIRCRAFT SYSTEMS. International Archives of the Photogrammetry, Remote Sensing & Spatial Information Sciences. Gaulton, R., & Malthus, T. J. (2010). LiDAR mapping of canopy gaps in continuous cover forests: A comparison of canopy height model and point cloud based techniques. International Journal of Remote Sensing, 31(5), 1193-1211. Rakha, T., & Gorodetsky, A. (2018). Review of Unmanned Aerial System (UAS) applications in the built environment: Towards automated building inspection procedures using drones. Automation in Construction, 93, 252-264. Grussenmeyer, P., Landes, T., Voegtle, T., & Ringle, K. (2008). Comparison methods of terrestrial laser scanning, photogrammetry and tacheometry data for recording of cultural heritage buildings. International Archives of Photogrammetry, Remote Sensing and Spatial Information Sciences, 37(B5), 213- 218. Shashi, M., & Jain, K. (2007). Use of photogrammetry in 3D modeling and visualization of buildings. ARPN Journal of Engineering and Applied Sciences, 2(2), 37-40. Hackenberg, J., Morhart, C., Sheppard, J., Spiecker, H., & Disney, M. (2014). Highly accurate tree models derived from terrestrial laser scan data: A method description. Forests, 5(5), 1069-1105. Sowmya, A., & Trinder, J. (2000). Modelling and representation issues in automated feature extraction from aerial and satellite images. ISPRS journal of photogrammetry and remote sensing, 55(1), 34-47. Ishida, K. (2017). Investigating the accuracy of 3D models created using SfM. In ISARC. Proceedings of the International Symposium on Automation and Robotics in Construction (Vol. 34). IAARC Publications. Whitehead, K., Moorman, B. J., & Hugenholtz, C. H. (2013). Brief Communication: Low-cost, on-demand aerial photogrammetry for glaciological measurement. The Cryosphere, 7(6), 1879-1884. Kim, M., Park, S., Irwin, J., McCormick, C., Danielson, J., Stensaas, G., ... & Burgess, M. (2020). Positional Accuracy This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. This contribution has been peer-reviewed. https://doi.org/10.5194/isprs-archives-XLVI-M-2-2022-65-2022 | © Author(s) 2022. CC BY 4.0 License. 69
https://openalex.org/W2028232248
https://europepmc.org/articles/pmc4124980?pdf=render
English
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Optical coactivation in cortical cells: reprogramming the excitation-inhibition balancing act to control neuronal gain in abstract and detailed models
BMC neuroscience
2,014
cc-by
1,073
Optical coactivation in cortical cells: reprogramming the excitation-inhibition balancing act to control neuronal gain in abstract and detailed models Sarah J Jarvis1*, Konstantin Nikolic2,3, Simon R Schultz1 From The Twenty Third Annual Computational Neuroscience Meeting: CNS*2014 Québec City, Canada. 26-31 July 2014 The interplay of excitatory and inhibitory activity in neu- ronal populations is finely regulated within cortical layers, with their imbalance being heavily implicated as the underlying cause for many neurological disorders, such as autism, schizophrenia and epilepsy. A key regulatory mechanism is gain modulation, in which the amplitude of response changes while the cell’s selectivity remains unaf- fected. Previous work has addressed gain modulation by examining the interplay of excitatory and inhibitory input at the soma [1]. However, given the non-linear integration that occurs in dendritic arbors, it remains unclear how gain is modulated when the input is located at synaptic locations. For investigating and manipulating this balance of activity throughout the entire neuronal morphology, optogenetics is a powerful tool due to the fine temporal and spatial precision it provides [2]. Furthermore, due to the development of excitatory opsins, such as Channelrho- dopsin-2 (ChR2), that depolarize neuronal membrane and silencing opsins, including halorhodopsin (NpHR), that hyperpolarize the membrane, disjoint subdomains of the dendritic and soma morphology can be targeted. This cap- ability has recently been furthered by the development of co-activated opsins, such as ChR2-NpHR [3], which allow independent excitation and inhibition within the same neural population due to the different preferential excita- tion wavelengths of each opsin (l=490, 585nm for ChR2 and NpHR respectively). Together, these opsins provide a potential window through which to examine the interplay of competing excitatory and inhibitory inputs for differing spatial and temporal patterns of activation. We demonstrated previously that gain modulation in a detailed model of a Layer 5 Pyramidal cell using co- activated opsins is possible but highly dependent on the dendritic subdomains targeted [4,5], with whole cell illu- mination necessary to illicit gain modulation. In con- trast, partial illumination of only the apical dendrites and soma resulted in no gain modulation. This suggests a strong link between potential for gain modulation and neuron morphology. While this result helps to untangle the relative contribution of excitatory and inhibitory influences, and warns of inadvertent errors when shal- low illumination occurs experimentally. We investigate this relation by first testing optical activa- tion in abstracted neuron morphologies that include mod- els of ChR2 and NpHR. © 2014 Jarvis et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Jarvis et al. BMC Neuroscience 2014, 15(Suppl 1):F1 http://www.biomedcentral.com/1471-2202/15/S1/F1 Jarvis et al. BMC Neuroscience 2014, 15(Suppl 1):F1 http://www.biomedcentral.com/1471-2202/15/S1/F1 Open Access FEATURED TALK PRESENTATION FEATURED TALK PRESENTATION * Correspondence: s.jarvis@imperial.ac.uk 1Department of Bioengineering, Imperial College, London SW7 2AZ UK Full list of author information is available at the end of the article Optical coactivation in cortical cells: reprogramming the excitation-inhibition balancing act to control neuronal gain in abstract and detailed models By creating a family of neural morphologies that extend a simple ball-and-stick neuron model, we investigate how uni-, bi- and multi-polar neurons vary gain modulation upon partial illumination. External driving input is provided as both current injection and as multiple synaptic-like events at locations on den- drites, rather than the soma, to mimic input conditions for both in vitro and in vivo experiments. Using these models, we identify optimal illumination strategies for each mor- phological class of neuron, and predict how robust neuro- nal response is upon partial illumination. Finally, we test detailed neuron morphologies, including stellate interneur- ons, to test the predictions made by our abstract models. Our results highlight the role of dendritic subdomains and the localized contribution of excitatory and inhibitory activity in gain modulation. Importantly, our model allows us to predict experimental illumination strategies that are tailored to neuronal morphology and are robust to any limitations that can occur experimentally. * Correspondence: s.jarvis@imperial.ac.uk 1Department of Bioengineering, Imperial College, London SW7 2AZ UK Full list of author information is available at the end of the article Page 2 of 2 Page 2 of 2 Jarvis et al. BMC Neuroscience 2014, 15(Suppl 1):F1 http://www.biomedcentral.com/1471-2202/15/S1/F1 Acknowledgements This work was supported by Wellcome Trust grant 097816/Z/11/A. SJJ is supported by Marie Curie Intra-European Fellowship within the 7th European Community Framework Programme. European Community Framework Programme. Authors’ details 1 f 1Department of Bioengineering, Imperial College, London SW7 2AZ UK. 2Institute of Biomedical Engineering, Department of Electrical and Electronic Engineering, Imperial College, London SW7 2AZ UK. References 1. Chance FS, Abbott LF, Reyes AD: Gain modulation from background synaptic input. Neuron 2002, 35:773-782. 2. Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K: Millisecond- timescale, genetically targeted optical control of neural activity. Nat Neurosci 2005, 8(9):1263-1268. 3. Han X, Boyden ES: Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution. PLoS one 2007, 2(3):e299. 4. Grossman N, Simiaki V, Martinet C, Toumazou C, Schultz SR, Nikolic K: The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. J Comp Neurosci 2013, 34(3):477-488. 5. Jarvis S, Nikolic K, Grossman N, Schultz SR: Controlling the neuronal balancing act: optical coactivation of excitation and inhibition in neuronal subdomains. BMC Neuroscience 2013, 34(3):477-488. 6. Nikolic K, Jarvis S, Grossman N, Schultz SR: Computational models of optogenetic tools for controlling neural circuits with light. Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC ’13) Osaka, Japan; 2013. doi:10.1186/1471-2202-15-S1-F1 Cite this article as: Jarvis et al.: Optical coactivation in cortical cells: reprogramming the excitation-inhibition balancing act to control neuronal gain in abstract and detailed models. BMC Neuroscience 2014 15(Suppl 1):F1. doi:10.1186/1471-2202-15-S1-F1 Cite this article as: Jarvis et al.: Optical coactivation in cortical cells: reprogramming the excitation-inhibition balancing act to control neuronal gain in abstract and detailed models. BMC Neuroscience 2014 15(Suppl 1):F1. Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit
https://openalex.org/W2043691788
https://epress.lib.uts.edu.au/journals/index.php/portal/article/download/1652/2602
English
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The Transmission of Chinese Medicine in Australia
Portal
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cc-by
5,626
Mary Garvey, University of Technology, Sydney Mary Garvey, University of Technology, Sydney PORTAL Journal of Multidisciplinary International Studies, vol. 8, no. 2, July 2011. , g y ISSN: 1449-2490; http://epress.lib.uts.edu.au/ojs/index.php/portal , Issue, guest edited by Beatriz Carrillo García and Devleena Ghosh. f p y , , , y Health and Borders Across Time and Cultures: China, India and the Indian Ocean Region Special ; p p j p p p PORTAL is published under the auspices of UTSePress, Sydney, Australia. PORTAL Journal of Multidisciplinary International Studies, vol. 8, no. 2, July 2011. Health and Borders Across Time and Cultures: China, India and the Indian Ocean Region Spec I t dit d b B t i C ill G í d D l Gh h Introduction Chinese medicine is a complex field with a very long history and a great many diverse currents. Today, mainland Chinese still use Chinese medicine (CM) for the treatment of a wide range of medical conditions, and China’s medical students study CM alongside Western biomedicine because the nation’s integrated healthcare system delivers both. Australians also use CM for all kinds of acute and chronic illnesses even though Australian CM practitioner training qualifies its graduates to practice Chinese acupuncture and herbal medicine only. A brief overview of CM in China and Australia below will highlight some of the factors that have influenced its evolution over the last century, its transmission to Australia, and the continued challenges to its transmission in Australia. acupuncture and herbal medicine only. A brief overview of CM in China and Australia below will highlight some of the factors that have influenced its evolution over the last century, its transmission to Australia, and the continued challenges to its transmission in Australia. The transmission of CM within and outside of China has historically been possible largely due to the textual legacy that has recorded its conceptual and therapeutic developments. While there are a few earlier sources from the Warring States period (476–221 BCE), China’s literary medical traditions really began in the Han dynasty (206 BCE–220 CE) with the compilation of its earliest and most famous medical classics: the Yellow Emperor’s Internal Canon (黄帝内经 Huangdi Neijing c.100 BCE); the Canon of Difficult Issues (难经 Nanjing c.150 CE); and the Treatise on Cold Damage and Miscellaneous Disorders (伤寒杂病论 Shanghan Zabing Lun c.200 CE). Transmission of Chinese Medicine in Australia Garvey Garvey In Chinese libraries today there are over 12,000 pre-modern medical texts covering the period since the Han, but only a few have been translated into modern languages in a philologically serious way (Unschuld 1993: 24). Moreover, translations, technical language and terminology to date have been largely interpretive, idiosyncratic and difficult to cross-reference. Because the practitioner’s image of the medical body guides their approach to treatment, education and training have consequences for clinical practice and for the development of CM as a distinct discipline and healthcare profession. In Australia, English language historical and philological research gives English speaking students and practitioners our best access to CM’s textual tradition. This kind of research, however, rarely assists CM clinicians with issues of medical practice. PORTAL, vol. 8, no. 2, July 2011. Introduction The model for medical history research separated scholarship from practice in the nineteenth century, so the historical and textual research of China’s medical traditions normally avoids discussing the implications of medical theorising for therapeutic interventions. Nevertheless, it can show how current concepts and practices developed from CM’s pre-modern literature; how CM’s early texts reveal a unique image of the body; and how the Chinese medical body image gives internal intelligibility to the discipline’s conceptual models and therapeutic methods. In an era where we recognise the integration of physical, psychological and social factors in health management, CM’s representations of the medical body have explanatory insight and therapeutic potential for contemporary clinicians and healthcare users. China’s early notions of qi (气), for example, bridge the distinction between energy and matter, and as a medical concept, qi organises bodily phenomena into qualitative and directional influences and substances. Qi-influences and substances form the basis of the Chinese medical perspective on physical, cognitive, sensory and emotional conditions, and CM’s conceptual language is linked to its therapeutic methods (Felt 2008). CM’s traditional conceptions are detailed and holistic, and they explain important features of body-mind physiology, disorder and treatment. Within this context, the paper explores some of the broad issues concerning the education and training of English speaking practitioners of CM in Australia. Those issues relate primarily to the translation of Chinese CM texts, the transmission of CM PORTAL, vol. 8, no. 2, July 2011. 2 2 Transmission of Chinese Medicine in Australia Garvey Garvey knowledge–practice, and the relevance of CM for contemporary Westerners. The translation of Chinese language texts in this case includes the complex cultural connotations of language, as well as the translation of classical Chinese into modern languages; the transmission of historical texts and practices from their original circumstances into twenty-first century medical practice; and the relevance of a foreign medical system and body of knowledge for the Australian healthcare context. PORTAL, vol. 8, no. 2, July 2011. Institutionalisation Today, and for the first time in China’s history, CM is fully institutionalised: Chinese medical training, qualification and practice are run by the State, and Chinese medical care is mainly hospital based. CM colleges and clinics were first established on a nationwide scale in the late 1950s and early 1960s as government run work units (Hsu 2000: 207). Today, those colleges and clinics are CM Universities and CM Hospitals. In the latter half of the twentieth century, the new centralised training curriculum needed a suite of teaching materials, and CM textbooks were created for the first time. The architects of China’s twentieth century revisions sought areas of crossover between CM and Western medicine and these were reflected in CM’s new curriculum and materials. Transmission of Chinese Medicine in Australia Garvey regime in 1949, much of the impetus for modernisation came from the new government policies to integrate CM with Western medicine. Recognising that the successful integration of Chinese and Western medicine required a fairly seamless and coherent approach to healthcare, the Chinese Communist Party (CCP) undertook an enormous effort to archive, research, revise and modernise CM. For that purpose the CCP initiated the collection of pre-modern texts; produced new editions of classic texts and reprinted some ancient collections that had been unavailable for centuries; and it made a concerted effort to record the folk and family lineage practices of the masses because it was felt that all these materials and practices were the communal property of the Chinese people (Porkert 1976; Taylor 2005). With the CCP’s sociopolitical agenda behind it, the modernisation of CM comprised a number of major changes which can be encapsulated under three broad processes: institutionalisation, standardisation, and scientisation and research (for more on these changes see Farquhar 1992; Hsu 1999; Scheid 2002b & 2007; Taylor 2005). These had the effect of organising and systematising CM, while at the same time emphasising its ‘scientific’ aspects. Their application to CM helped to adjust traditional concepts and methods and to make CM more suitable for integration with Western medicine. Chinese medicine in China In pre-modern China there was a great diversity of health, medical and self cultivation practices and learning. Medical practice was passed down familial lines and consisted of secret remedies and herbal formulas that were prescribed symptomatically. Students of medicine undertook apprenticeships with reputable doctors and the first step for literate and scholarly medical training was to memorise the medical classics by heart. However, by the early twentieth century, many influential Chinese considered all traditional medical practices backward and superstitious relics of Imperial China (Croizier 1975 & 1976), and with the end of the Imperial era in 1912, scientific medicine from the West began to take hold of the public mind. At that time, CM was far from being standardised, institutionalised or scientific. It was not a single, cohesive, coherent system of medicine, but a mass of complex and disparate currents that seemed to neglect objective methods and data, and even anatomical structures and physical mechanisms. Proponents of Western bioscientific medicine almost convinced the new Chinese Republican government to eradicate it altogether, but instead CM was modernised. To achieve this, the modernisation of CM during the twentieth century instigated a number of significant changes that have affected the way we encounter CM in the West. During China’s revolutionary period in the middle of the last century, CM was transformed into a more systematic medical discipline. The Communist government instigated a wave of revisions that were ideological and designed to integrate CM with ‘Western medicine,’ a term used by the Chinese to refer to the scientific medicine that had begun to filter into China via European missionaries and merchants well before the twentieth century. The two main revisionary influences during the twentieth century were modernisation and integration; with the coming to power of the Communist PORTAL, vol. 8, no. 2, July 2011. 3 3 Transmission of Chinese Medicine in Australia Standardisation Twentieth century revisions in the People’s Republic of China’s (PRC) included a Twentieth century revisions in the People’s Republic of China’s (PRC) included a PORTAL, vol. 8, no. 2, July 2011. 4 4 Transmission of Chinese Medicine in Australia Garvey number of projects aimed at standardising CM, starting with education and training and extending to terminologies, theoretical principles and therapeutic content. CM textbooks had to adjust their representations of Chinese medical concepts to demonstrate their connections with biomedical terms and categories, and all the new topics, theories and applications were standardised to comply with the centralised training curriculum. The standardisation of terms and concepts adopted biomedical connotations where possible and this trend spread to their translation into English. For example, 病 bing (illness) is translated as disease; 证 zheng (pattern) as syndrome; 消渴 xiaoke (wasting and thirsting) as diabetes. Other projects have standardised the location of acupoints, the analysis of illnesses and diseases according to their 气 qi patterns, and the strategies for treatments. In the twenty-first century, China’s internal revisions are going global: in Beijing, the CM State Administration has developed a ‘World Standard of Chinese Medicine Undergraduate Education’ document to guide CM training outside China (Shan 2009). PORTAL, vol. 8, no. 2, July 2011. Scientisation and Research The general acceptance of the scientific approach today has meant that its methods and the knowledge produced by them are thought to be factual, unbiased, reliable and widely applicable. To call a medical system ‘non-scientific’ today is to damn it as ‘arbitrary, irrational, unsystematic, misguided, ineffective and probably a danger to health’ (Cunningham & Andrews 1997: 7). Science was applied to CM to eradicate content deemed to be superstitious and out-dated, to correct pre-modern concepts and diagnostic methods, to align CM with bioscientific methods and CM terms with biomedical terms, and to evaluate the safety and efficacy of CM treatments. Some medical scientists have argued that it is possible to use and test CM from within a bioscientific framework, while also arguing that scientific clinical research could establish the efficacy of CM therapies and help develop a raft of new pharmaceuticals. The application of bioscientific methods usually meant removing CM’s traditional principles and concepts, and this was considered a win-win process. Science would make CM more efficient and more effective; and science could show the world that CM has a great deal to offer medical care systems everywhere. 5 Transmission of Chinese Medicine in Australia Garvey Considering CM’s historical legacy, its complex and disparate currents, its neglect of physical structures and mechanisms, its incompatible assumptions and methodological dissonance with biomedicine, the application of bioscientific principles to CM is a persuasive option for the contemporary healthcare industry. Pragmatists argue that CM should jettison the traditional packaging and adapt its therapeutic tools and substances to the biomedical paradigm. Many Chinese medical texts nowadays are written to this end, for clinicians and researchers who want to utilise CM within a Western biomedical framework (such as Chang 1992; Chen 1994; Chen & Chen 2004; Hou 1995; Liu & Liu 1998; Zhang 2003). Considering CM’s historical legacy, its complex and disparate currents, its neglect of physical structures and mechanisms, its incompatible assumptions and methodological dissonance with biomedicine, the application of bioscientific principles to CM is a persuasive option for the contemporary healthcare industry. Pragmatists argue that CM should jettison the traditional packaging and adapt its therapeutic tools and substances to the biomedical paradigm. Many Chinese medical texts nowadays are written to this end, for clinicians and researchers who want to utilise CM within a Western biomedical framework (such as Chang 1992; Chen 1994; Chen & Chen 2004; Hou 1995; Liu & Liu 1998; Zhang 2003). Scientisation and Research Even before the twentieth century, China’s indigenous medicine already had a long history of revisions that were designed to eradicate dogma and superstition. The PRC’s programs of scientisation, standardisation and institutionalisation characterise the latest overhaul, which began about one hundred years ago. Twentieth century changes have ‘modernised’ CM, making it a more suitable discipline for integration with Western biomedicine. Chinese medicine in Australia In the mid-1800’s Chinese gold miners began to settle in Australia. By 1887, ‘there were fifty Chinese herbal medicine practitioners on the Victorian goldfields, and by 1911 Chinese herbal remedies were available in Australia with English labels and directions’ (Bensoussan & Myers 1996: 22). But it was not until the early 1970’s that Chinese medicine began to attract mainstream interest, after the opening of Australia’s diplomatic relations with China and the beginnings of acupuncture training in Sydney. Late in the 1980s, a Sydney acupuncture college developed its four-year part-time course into an undergraduate degree program for accreditation by the NSW Higher Education Board. From 1992 that program, followed by others incorporating Chinese herbal medicine was absorbed into the Science and Health Sciences Faculties of four universities in Sydney and Melbourne. Some of the PRC’s first training program textbooks became the precursors of some of the first English language textbooks available in Australia and the West. For example, Manfred Porkert’s The Theoretical Foundations of Chinese Medicine (1974) was based on the Outline of TCM and Compendium of TCM (Nanjing Academy of TCM 1958; Nanjing College of TCM 1959); John O’Connor and Dan Bensky’s Acupuncture: A 6 PORTAL, vol. 8, no. 2, July 2011. 6 Transmission of Chinese Medicine in Australia Garvey Garvey Comprehensive Text (Shanghai College of TCM 1981) was a translation of the Textbook of Acu-Moxi-Therapy (Shanghai College of Traditional Medicine, Acu-Moxi-Therapy Teaching Unit 1962 & 1974); and Nathan Sivin’s Traditional Medicine in Contemporary China (1987) included a discussion and partial translation of The Revised Outline of TCM (Beijing College of TCM 1972). During the 1970s and 1980s these three books were the only PRC-based CM texts available in English. They introduced Australians and other Westerners to the twentieth century’s revised CM, known outside China as ‘Traditional Chinese Medicine’ (TCM). Today, TCM is the Chinese medical orthodoxy in China and the West. From its modest beginnings in Australia in the 1970’s the training of CM clinicians has moved from privately owned colleges into the university system (1992) and the profession is moving towards national registration in 2012. Australia’s much smaller scale institutionalisation of CM has nevertheless led to some significant gains for the discipline and the profession, such as more access to university resources that can provide greater opportunities for teaching and research. PORTAL, vol. 8, no. 2, July 2011. PORTAL, vol. 8, no. 2, July 2011. Chinese medicine in Australia The tertiary education and training of practitioners in Australia has also improved CM’s public profile, aligned it more closely with ‘mainstream’ healthcare, and when combined with national registration, public safety and confidence in CM will be enhanced. Nevertheless, in the Australian context CM is still only one tiny fish in a very large tertiary education and health services pond; and, unlike China’s integrated medical degree model, which trains Chinese students in both CM and biomedicine, Australia’s CM degrees qualify their graduates to practice CM only. Moreover, China’s medical graduates study and practice within a health system that supports both CM and biomedicine. In Australia there are no universities and hospitals solely devoted to CM; within universities CM remains too small to merit school or faculty status; and there are also no CM facilities within Australia’s government run hospital system. Thus, while in China CM has an established academic profile, a large base of reference and research, and the support of government policy and instruments, in Australia CM’s move into the university setting has by default, aligned it with bioscientific health and medical programs and their research agendas. Standardised concepts, terms, translations, acupoint locations, diagnostic parameters and therapeutic strategies have made some significant inroads into English language PORTAL, vol. 8, no. 2, July 2011. 7 Transmission of Chinese Medicine in Australia Garvey education materials. For a discipline whose discourses and methods have been developing over many centuries, standardisation offers a number of benefits. It gives CM a firm foundation for education and clinical learning; and it improves communication for education and medical practice, and between Chinese and English speaking countries. Standardisation often means biomedicalising CM’s content and categories, which allows clinicians and researchers to apply CM therapies to biomedical diagnoses. Thus, from a biomedical perspective, standardisation should improve the inter-examiner reliability of CM practice and research. However, the biomedical re-interpretation of traditional terms that has taken place through the standardisation of terminology has lead to a sense that CM is essentially similar to biomedicine (Waldram 2000). When guided by bioscientific disease classification, the standardisation of CM terms displaces polysemous terms with more fixed, biomedical meanings and relations. It removes their original contexts and meanings and decouples them from the Chinese medical archive—their conceptual histories and contexts. Biomedical standardisation thereby erases thousands of years of diversity, and in doing so it removes the tradition’s inbuilt flexibility (Farquhar 1987). PORTAL, vol. 8, no. 2, July 2011. Chinese medicine in Australia The precision of biomedical technologies and research methods promise objective, factual information, and they offer a systematic way of investigating complex systems by isolating and testing its more simple parts or factors. Evidence based medicine relies on these methods and technologies and overrides all other criteria for therapeutic safety, efficacy and best practice. Because scientific clinical research determines therapeutic safety and efficacy, it also determines ethical medical practice. The investigation of CM using bioscientific research methods, however, has proven to be problematic in a number of ways. The research applied to CM often consists of unpacking a clinical event, which is itself a collection of complex processes, to systematically test an isolated factor. For example, measuring the effects on a biomedical disease entity of a single acu-point, or a fixed protocol, or a single active constituent derived from one of CM’s medicinal substances. CM’s practice methods and therapies are largely incompatible with this kind of research. Classic herbal formulas are complex interventions that are structured to address patterns of illness and dysfunction; and both acupuncture and herbal prescriptions are adjusted to individual presentations that change from one clinical appointment to the next. PORTAL, vol. 8, no. 2, July 2011. 8 8 Transmission of Chinese Medicine in Australia Garvey Garvey Furthermore, CM diagnosis does not rely on quantitative data derived from measuring technologies and other objective methods. In fact, ordinary sensory information—the patient’s subjective experiences and perceptions, and the clinician’s own observations and interpretations—were thought to be sufficient to understand the nature of illness and discern the mechanisms of dysfunction. The methodological constraints required by scientific research ignore CM’s diagnostic reasoning and basic principles of practice, alter traditional methods and standardise treatment protocols (to reduce variables for example), and remove CM’s flexibility and responsiveness to clinical changes and variations (Bian & Moher 2008). The options for Chinese medicine in Australia CM in Australia does not have the depth and maturity of CM in China. In Australia we have only a few decades of marginalised practice, a very small senior practitioner population, limited access to pre-modern texts, and a relatively slight hold on the public mind. Our ability to study and practice CM in Australia is affected by the transmission of CM from its traditional contexts. Specifically, these factors are related to CM’s language and literature, its history and development, its philosophical and methodological assumptions, and its viability in the contemporary sociopolitical medical setting. To address the problems of language and translation, English speaking students of CM could learn and translate Chinese. However, China’s early medical texts are notoriously compact and difficult, even for native Chinese speakers. Consequently, an enormous number of editions, revisions, commentaries and interpretations have accumulated around them over the centuries, and the few English language translations we have of these materials are of variable quality (Sivin 1993: 207). Westerners who wish to practice traditional CM strive to gain an understanding of the discipline that corresponds to its established therapeutic methods. Traditionalism and idealism aside, there are some pragmatic reasons to study traditional discourses. Our ability to recognise and understand the traditional Chinese medical body and its representations in the pre-modern literature fundamentally changes our clinical encounters with our patients, and has ramifications for diagnostic and therapeutic decision making (Farquhar 1994; Scheid 2002a & 2006; Zhou & Zhang 2005). By PORTAL, vol. 8, no. 2, July 2011. 9 9 Transmission of Chinese Medicine in Australia Garvey studying Chinese medical history and its pre-modern texts we expand our understanding of how health, disease and the medical body can be conceptualised: this connects us with the tradition and allows us to incorporate a raft of time-honoured clinical methods and techniques. However, the odds against contemporary English speaking practitioners understanding the Chinese medical tradition are high. To facilitate the educational and clinical transmission of CM today China has ‘scientised’ its textbooks, and many of the historical and cultural contexts and meanings of their content have been removed. Similarly, CM textbooks in English have changed traditional concepts: the biomedicalisation of pre-modern terms and concepts dislocates them from CM’s established therapeutic methods and disrupts the discipline’s internal intelligibility. PORTAL, vol. 8, no. 2, July 2011. 1 Conclusions Today, Western biomedicine is the dominant medical discourse in healthcare systems worldwide. In China and in the rest of the world, CM has been revising its content and concepts to adopt a more mainstream, bioscientific perspective. These revisions make CM more suitable for integration or assimilation with biomedicine, and for investigation using scientific perspectives and methods. The revisions that took place over the last century are ongoing—they have aligned CM with a more biomedical perspective, they have had important consequences for the transmission of CM in Australia and the West, and are changing CM worldwide. Twentieth century changes to CM have organised and systematised many of the disparate medical currents that developed in pre-modern China. Over the last hundred years CM’s overhaul within China was driven by the sociopolitical imperatives to modernise and integrate its healthcare system. This push to modernise CM is not inconsistent with previous state instigated revisions that occurred periodically over its long history and that were designed to eradicate dogma and superstition. In Australia, CM as a distinct medical discipline does not have a strong cultural basis or presence, and CM training is only a few decades old. Thus, in contemporary Western settings, CM must prove itself to a sceptical biomedical health industry while at the same time promoting its complementary approach to the practice of medicine (Chi 1994). The education and practice of CM and biomedicine are likely to co-exist independently in Australia for quite some time, and the question for the future of CM in Australia is how best to professionalise the discipline and negotiate our way. The path of least resistance politically and educationally is to biomedicalise CM. However, even though biomedicalisation offers some sociopolitical kudos and some practical educational shortcuts, it has also lead to unworkable simplifications and methodological failures. The education and practice of CM and biomedicine are likely to co-exist independently in Australia for quite some time, and the question for the future of CM in Australia is how best to professionalise the discipline and negotiate our way. The path of least resistance politically and educationally is to biomedicalise CM. However, even though biomedicalisation offers some sociopolitical kudos and some practical educational shortcuts, it has also lead to unworkable simplifications and methodological failures. PORTAL, vol. 8, no. 2, July 2011. The options for Chinese medicine in Australia The changes and issues described above present a significant challenge for the transmission of CM and its preservation as a distinct medical system in contemporary English speaking countries such as Australia. While it is difficult to predict the course of CM’s global emergence in any detail, commentators such as Volker Scheid (1999) postulate three possible scenarios. I mention them since they broadly apply to the Australian context where all three to some extent are underway. The first would see CM institutionalised. Although it is unlikely Australia will follow China’s model of integration and institutionalisation, Australian universities now have CM degree courses; the Victorian state government currently registers its practitioners, and national registration will be in place in Australia in 2012. A second possible scenario would see biomedicine assimilate CM. Biomedical- pharmaceutical researchers would selectively ‘discover’ the active constituents in Chinese medicinal substances and employ Chinese medical techniques wherever they might benefit health outcomes. Assimilation would replace traditional diagnostic reasoning and methods with bioscientific ones, and effectively dismantle CM as a distinct form of medical practice. Scheid’s third scenario sees CM ignoring mainstream political and economic power, and continuing its traditions ‘for the sake of clinical efficacy’ (1999: SIV10). With little knowledge of its historical trends and developments CM practitioners today must either reinvent the wheel or replace it with dissonant constructs. Conversely, with a firmer grasp of the Chinese medical tradition the profession would be in a better position to negotiate what is learned, taught, practiced, PORTAL, vol. 8, no. 2, July 2011. 10 10 Transmission of Chinese Medicine in Australia Garvey and researched. Conclusions Instead, building access to the tradition’s primary sources can reveal internal principles and intelligibility that support its methods of practice and continue the evolution of the field and its traditions. Allied with biomedicine, the distinctive features and methods of traditional CM may well provide real benefits for the Australian healthcare system, users and costs. Instead, building access to the tradition’s primary sources can reveal internal principles and intelligibility that support its methods of practice and continue the evolution of the field and its traditions. Allied with biomedicine, the distinctive features and methods of traditional CM may well provide real benefits for the Australian healthcare system, users and costs. 11 11 Transmission of Chinese Medicine in Australia Garvey Reference List Beijing College of TCM 1972, Revised Outline of Chinese Medicine, Beijing College of TCM, Beijing (in Chinese). Bensoussan, A. & Myers, S. P. 1996, Towards a Safer Choice: The Practice of Traditional Chinese Medicine In Australia, University of Western Sydney, Macarthur, Sydney. Bian, Z. & Moher, D. 2008, ‘Clinical Studies and Randomized Controlled Trials in Chinese Herbal Medicine: A Historical and Contemporary Review - Part Two,’ Chinese Medicine Times eJournal, vol. 3, no. 3. Online, available: http://www.chinesemedicinetimes.com/ [accessed 1 September 2008]. Chang, M. Y. 1992, Anticancer Medicinal Herbs, trans. Y. Bai. Hunan Science and Technology Press, Hunan, China. Chen, J. D. 1994, Treatment of Diabetes with Traditional Chinese Medicine, trans. Y. K. Sun, S. H. Zho & Y. B. Lu. Shandong Science and Technology Press, Jinan, China. Chen, J. K. & Chen, T. T. 2004, Chinese Medical Herbology and Pharmacology. Art of Medicine Press, City of Industry, California. Chi, C. H. 1994, ‘Integrating Traditional Medicine into Modern Health Care Systems: Examining the Role of Chinese Medicine in Taiwan,’ Social Science and Medicine, vol. 39, no. 3: 307–332. Croizier, R. C. 1975, ‘Medicine and Modernization in China: An Historical Overview,’ in Medicine In Chinese Cultures: Comparative Studies of Health Care in Chinese and Other Societies. Papers and Discussions from a Conference Held in Seattle, Washington, USA, February 1974, (eds) A. Kleinman, P. Kunstadter, E. R. Alexander & J .L. Gale. U.S. Dept. of Health, Education, and Welfare, Public Health Service, National Institute of Health, Washington: 21–35. , , , g ier, R. C. 1976, ‘The Ideology of Medical Revivalism in Modern China,’ in Asian Medical Systems: g Croizier, R. C. 1976, ‘The Ideology of Medical Revivalism in Modern China,’ in Asian Medical A Comparative Study, (ed.) C. Leslie. University of California Press, Berkeley: 341–355. C o e , . C. 976, e deo ogy o ed ca ev va s ode C a, sian edical Sys A Comparative Study, (ed.) C. Leslie. University of California Press, Berkeley: 341–355. Cunningham, A. & Andrews, B. 1997, ‘Western Medicine as Contested Knowledge,’ in Western Medicine as Contested Knowledge, (eds) A. Cunningham & B. Andrews. Manchester University Press, Manchester. Farquhar, J. 1987, ‘Problems of Knowledge in Contemporary Chinese Medical Discourse,’ Social Scienc and Medicine, vol. 24, no. 12: 1013–1021. Farquhar, J. 1992, ‘Time and Text: Approaching Chinese Medical Practice Through Analysis of a Published Case,’ in Paths to Asian Medical Knowledge, (eds) L. 2007, Currents of Tradition in Chinese Medicine 1626-2006. Eastland Press, Seattle. Reference List Young & A. Young. University of California Press, Berkeley & Los Angeles: 62–73. Farquhar, J. 1994, Knowing Practice: The Clinical Encounter of Chinese Medicine. Westview Press, Boulder. Felt, R. 2008, ‘Is Qi Energy?,’ in Theime Almanac 2008: Acupuncture and Chinese Medicine, (eds) M. McCarthy & S. Birch. Thieme, Stuttgart: 304–308. Hou, J. L. 1995, Treatments of Gastrorintestranal Diseases in Traditional Chinese Medicine. Academy Press, Beijing. Hsu, E. 1999, The Transmission of Chinese Medicine. Cambridge University Press, Cambridge. Hsu, E. 2000, ‘Spirit (Shen), Styles of Knowing, and Authority in Contemporary Chinese Medicine,’ Culture, Medicine and Psychiatry, vol. 24, no. 2: 197–229. Liu, Y. C. & Liu, Z. W. 1998, Basic Theories of Traditional Chinese Medicine, Academy Press, Beijing Nanjing Academy of TCM 1958, Outline of TCM. People’s Medical Publishing, Beijing (in Chinese). f y j g Nanjing Academy of TCM 1958, Outline of TCM. People’s Medical Publishing, Beijing (in Chinese). Nanjing College of TCM 1959, Compendium of TCM. People’s Hygiene Press, Beijing (in Chinese). Porkert, M. 1974, The Theoretical Foundations of Chinese Medicine: Systems of Correspondence. First ed. MIT Press, Cambridge, MA. Porkert, M. 1976, ‘The Intellectual and Social Impulses Behind the Evolution of Traditional Chinese Medicine,’ in Asian Medical Systems: A Comparative Study, (ed.) C. Leslie. University of California Press, Berkeley: 63–76. Scheid, V. 1999, ‘The Globalisation of Chinese Medicine,’ The Lancet, vol. 354, supplement 4, December: SIV10-SIV10. _____ 2002a, Chinese Medicine in Contemporary China: Plurality and Synthesis. Duke University Press, Durham, NC, & London. _____ 2002b, ‘Remodeling the Arsenal of Chinese Medicine: Shared Pasts, Alternative Futures,’ Annals, American Academy of Political and Social Science, vol. 583, September: 136–159. _____2006, ‘Chinese Medicine and the Problem of Tradition,’ Asian Medicine, Tradition and Modernity, vol. 2, no. 1: 59–71. _____ 2007, Currents of Tradition in Chinese Medicine 1626-2006. Eastland Press, Seattle. Scheid, V. 1999, ‘The Globalisation of Chinese Medicine,’ The Lancet, vol. 354, supplement 4, December: SIV10-SIV10. 2002 Chi M di i i C Chi Pl li d S h i D k U i i P December: SIV10-SIV10. _____ 2002a, Chinese Medicine in Contemporary China: Plurality and Synthesis. Duke University Press, Durham, NC, & London. _____ 2002b, ‘Remodeling the Arsenal of Chinese Medicine: Shared Pasts, Alternative Futures,’ Annals, American Academy of Political and Social Science, vol. 583, September: 136–159. _ 2002b, ‘Remodeling the Arsenal of Chinese Medicine: Shared Pasts, Alternative Futures,’ Annals, American Academy of Political and Social Science, vol. PORTAL, vol. 8, no. 2, July 2011. Reference List 583, September: 136–159. y f p _2006, ‘Chinese Medicine and the Problem of Tradition,’ Asian Medicine, Tradition and Modernity, vol. 2, no. 1: 59–71. 12 PORTAL, vol. 8, no. 2, July 2011. Transmission of Chinese Medicine in Australia Transmission of Chinese Medicine in Australia Garvey Shan, J. 2009, ‘New TCM Standard Created,’ China Daily: The National English Language Newspaper, October 13: 1. Online, available: http://www.chinadaily.com.cn/ [accessed 1 November 2009]. Shan, J. 2009, ‘New TCM Standard Created,’ China Daily: The National English Language Newspaper, October 13: 1. Online, available: http://www.chinadaily.com.cn/ [accessed 1 November 2009]. Shanghai College of TCM 1981, Acupuncture: A Comprehensive Text, trans. J. O’Connor & D. Bensky. Eastland Press, Chicago. Shanghai College of Traditional Medicine (Acu-Moxi-Therapy Teaching Unit) (1962 & 1974), Textbook of Acu-Moxi-Therapy. Shanghai Science and Technology Press, Shanghai (in Chinese). Sivin, N. 1987, Traditional Medicine in Contemporary China: a Partial Translation of Revised Outline of Chinese Medicine (1972): With an Introductory Study on Change in Present Day and Early Sivin, N. 1987, Traditional Medicine in Contemporary China: a Partial Translation of Revised Outline of Chinese Medicine (1972): With an Introductory Study on Change in Present Day and Early Medicine. Center for Chinese Studies, University of Michigan, Ann Arbor. _____ 1993, ‘Huang Ti Nei Ching,’ in Early Chinese Texts: A Bibliographical Guide, (ed.) M. Loewe. Society for the Study of Early China; Institute of East Asian Studies, University of California, Berkeley: 196–215. or Chinese Studies, University of Michigan, Ann Arb Taylor, K. 2005, Chinese Medicine in Early Communist China, 1945–63: A Medicine of Revolution. RoutledgeCurzon, London. Unschuld, P. U. 1993, ‘History of Chinese Medicine,’ in The Cambridge World History of Human Disease, (ed.) K. F. Kiple. Cambridge University Press, Cambridge: 20–27. Waldram, J. B. 2000, ‘The Efficacy of Traditional Medicine: Current Theoretical and Methodological Issues,’ Medical Anthropology Quarterly, vol. 14, no. 4: 603–625. Zhang, D. Z. 2003, Treating Toxico-Side Effects of Radiotherapy and Chemotherapy with Integrative Traditional Chinese and Western Medicine, trans. W. Lu & P. Lin. People’s Medical Publishing House, Beijing. Zhou, F. W. & Zhang, Q. W. 2005, ‘The Path of the Old Chinese Doctors,’ The Lantern, vol. 2, no. 2: 6– 13. 13 13
https://openalex.org/W3014474950
https://europepmc.org/articles/pmc7240692?pdf=render
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Ultramarathon Plasma Metabolomics: Phosphatidylcholine Levels Associated with Running Performance
Sports
2,020
cc-by
5,630
Received: 18 February 2020; Accepted: 30 March 2020; Published: 1 April 2020 Abstract: The purpose of this study was to identify plasma metabolites associated with superior endurance running performance. In 2016, participants at the Western States Endurance Run (WSER), a 100-mile (161-km) foot race, underwent non-targeted metabolomic testing of their post-race plasma. Metabolites associated with faster finish times were identified. Based on these results, runners at the 2017 WSER underwent targeted metabolomics testing, including lipidomics and choline levels. The 2017 participants’ plasma metabolites were correlated with finish times and compared with non-athletic controls. In 2016, 427 known molecules were detected using non-targeted metabolomics. Four compounds, all phosphatidylcholines (PCs) were associated with finish time (False Discovery Rate (FDR) < 0.05). All were higher in faster finishers. In 2017, using targeted PC analysis, multiple PCs, measured pre- and post-race, were higher in faster finishers (FDR < 0.05). The majority of PCs was noted to be higher in runners (both pre- and post-race) than in controls (FDR < 0.05). Runners had higher choline levels pre-race compared to controls (p < 0.0001), but choline level did not differ significantly from controls post-race (p = 0.129). Choline levels decreased between the start and the finish of the race (p < 0.0001). Faster finishers had lower choline levels than slower finishers at the race finish (p = 0.028). Keywords: exercise; physiology; endurance; running; ultramarathon; performance Article Ultramarathon Plasma Metabolomics: Phosphatidylcholine Levels Associated with Running Performance Tracy B. Høeg 1,2,3,* , Kenneth Chmiel 4, Alexandra E. Warrick 1, Sandra L. Taylor 5 and Robert H. Weiss 4,6 Tracy B. Høeg 1,2,3,* , Kenneth Chmiel 4, Alexandra E. Warrick 1, Sandra L. Taylor 5 and Robert H. Weiss 4,6 1 Department of Physical Medicine & Rehabilitation, University of California, Sacramento, CA 95817, USA; aewarrick@ucdavis.edu 4 Division of Nephrology, Department of Medicine, University of California, Davis, CA 95817, USA; kjchmiel@ucdavis.edu (K.C.); rhweiss@ucdavis.edu (R.H.W.) j Division of Biostatistics, Department of Public Health Sciences, University of California, j 5 Division of Biostatistics, Department of Public Health Sciences, University of California, Davis, CA 95616, USA; sltaylor@ucdavis.edu y 6 Medical Service, VA Northern California Health Care System, Sacramento, CA 95655, USA 6 Medical Service, VA Northern California Health * Correspondence: tracybethhoeg@gmail.com sports sports sports sports 1. Introduction A low level of cardiorespiratory fitness (CRF) has been associated with higher all-cause mortality and specifically with increased risk of cardiovascular disease and numerous cancers [1]. There is significant evidence that CRF is a more powerful predictor of mortality than obesity, hypertension, smoking and type 2 diabetes [1]. Elite ultramarathon runners have one of the highest known levels of CRF, being capable of running 161 km on mountainous terrain in under 24 h. Distinguishing the metabolomic profile of these elite athletes from slower runners and sedentary adult controls may provide useful insight into the biological processes associated with increasing levels of fitness, decreased mortality and decreased risk of many diseases. www.mdpi.com/journal/sports www.mdpi.com/journal/sports Sports 2020, 8, 44; doi:10.3390/sports8040044 2 of 9 Sports 2020, 8, 44 Metabolomics identifies the final endpoints of biochemical processes and closely reflects an organism’s phenotype, environment and behavior [2]. Exercise metabolomics can provide valuable insights regarding the end biological impact of repeat and prolonged physical activity [3] as well of the biological processes associated with higher levels of endurance performance. The metabolomic profile associated with superior endurance sports performance has yet to be explored, though metabolomics studies have already identified choline-containing compounds and certain phospholipids to be positively associated with level of physical fitness [4,5]. Numerous studies have looked at the immediate impact of exercise on the metabolome [6–9], however there is little information on the difference in the metabolomic profiles of exceptionally physically fit vs. sedentary adults. Studying elite ultramarathon runners vs. non-athletic controls allow us to make the unique comparison of two groups with starkly different levels of physical fitness and add to the current limited literature available regarding the metabolites associated with increased physical fitness. The Western States Endurance Run (WSER) is a 161-km foot race, which takes place on a dirt trail from Squaw Valley to Auburn, California, USA, the 4th Saturday of June every year. The race has over 12,000 m in overall elevation change and temperatures can often exceed 40 ◦C. The unique endurance demands and organization of this ultramarathon, including participation of both very fast and relatively slower runners served as an ideal setting for this study. In Phase I of this study, we hypothesized that non-targeted plasma metabolomics would identify specific metabolites or groups of metabolites to be associated with a faster ultramarathon finish time. Phosphatidylcholines (PCs) emerged as being associated with ultramarathon performance. 2.2. Performance Endpoint 161-km race finish time was chosen as our performance endpoint, as a proxy for CRF. 2. Materials and Methods This study was approved by the Institutional Review Board at UC Davis (#824889). Research subjects were registered runners for the WSER and were recruited via a pre-race informational email prior to their participation in 2016 and/or 2017. All runners were invited to participate and all interested in participating signed a pre-race consent form. Enrollment was limited to 50 participants in 2016 and 52 in 2017. The exclusion criteria were age <18 years, pregnancy, and inability to read and/or speak English. A participant flow chart is shown in Figure 1. 2.1. Participant Flow In Phase I in 2016, runners who consented to take part in the study prior to the race had their blood drawn within an hour of finishing the race. Runners who did not finish the race, refused the post-race blood draw, or in whom blood could not be obtained, were excluded from the study. Non-targeted metabolomics analysis was performed on all participants’ samples. In Phase II in 2017, runners who consented to take part in the study, had a pre-race blood sample one day before the race and, then again post-race, within one hour of finishing. Runners who did not finish the race, refused the post-race blood draw, or in whom blood could not be obtained were excluded from the study. Targeted lipidomics and choline analysis was performed on all participants’ pre- and post-race samples. 2.2. Performance Endpoint 1. Introduction This was consistent with the previous literature noting PCs to be positively correlated with VO2max [4] and inversely correlated to neuromuscular disease severity [10]. In Phase II of the study, using targeted plasma metabolomics, we hypothesized that pre- and post-race levels of PCs would be 1. Associated with faster ultramarathon finish time, 2. Related to plasma choline levels and, 3. Higher in runners than in the non-athletic controls. 3.2. Phase I: Non-ta 2.4. Control Subjects In 2016, non-targeted metabolomics analysis was performed using post-race serum from the 39 participants. Of 427 known compounds detected, four were significantly associated with finish time (FDR < 0.05) with these being PCs 40:8, 38:5 A, o-32:0 and PC 40:4 or 40:5 (Figure 2). In Phase II, fourteen adult (≥30 years) sex-matched and age range-matched control plasma samples for the 2017 participants from self-identified “non-athletic” donors were purchased from, BioreclamationIVT (Westbury, NY, USA). We had one control for every two participant samples. The control samples were also submitted for targeted lipidomics and choline analysis as described above. 2.3. Metabolomic Analysis All blood was drawn by the same phlebotomists in a given year using identical technique. The plasma, obtained by centrifuging whole blood at room temperature, was immediately placed on dry ice 3 of 9 Sports 2020, 8, 44 in the field and the next day moved to a laboratory freezer kept at −80 ◦C until the metabolomics analysis, which occurred within several months. In 2016, approximately half of each plasma sample underwent mass-spectrometry based non-targeted metabolomic analysis [11]. Non-targeted metabolomic profiles were obtained using CSH-QTOF MS/MS in both positive and negative modes as previously reported [11]. The other half remained frozen at −80 ◦C. In 2017, the same protocol was followed, except that targeted metabolomic analysis was performed for phospholipids and choline (based on the 2016 results). All samples were quantified for amount of hemolysis using the Mayo Clinic’s “Color Chart for Detection of Hemolysis” [10]. Sports 2020, 8, 44 4 of 9 Figure 1. Participation and analyses performed in Phases I and II of the study. Figure 1. Participation and analyses performed in Phases I and II of the study. Figure 1. Participation and analyses performed in Phases I and II of the study. Figure 1. Participation and analyses performed in Phases I and II of the study. 3.2. Phase I: Non-ta 2.4. Control Subjects 2.5. Statistical Analysis For the 2016 data, a two-sample t-test was used to compare the post-race GCTOF (gas chromatography time of flight) mass spectrometry and lipid values of our 10 fastest finishing with our 10 slowest finishing participants. False discovery rates (FDR) were calculated for each analysis to account for multiple testing. Statistical testing was two-sided and considered significant if FDR < 0.05. For the 2017 data, paired sample t-tests were used to test for difference between pre- and post-race choline and PC levels in runners. Two-sample t-tests were used to compare pre- and post-race choline and PC levels in runners to the non-athletic controls; PC levels were log transformed for this analysis to meet assumptions of normality and homogeneity of variances. Finish time was related to pre- and post-race choline levels using simple linear regression. Prior to analysis, using all metabolites, the 4 of 9 Sports 2020, 8, 44 intensity values of each sample were total quantity normalized to the median total intensity level. Only positive mode PC levels were analyzed in Phase II of the study, as positively charged PCs are subject to a high amount of electrospray depression in the negative mode. All statistical tests were two-sided and considered significant if FDR < 0.05. 3.1. Participant and Control Characteristics Phase I of the study was conducted at the 2016 WSER and plasma samples were obtained post-race from 39 of the 49 consented runners (Figure 1), 8/39 (20.5%) being female. Mean age was 43 years (95% CI = 40–46, range = 29–66). All runners who consented to participate pre-race were considered “consented runners”. Nine runners did not finish the race and one opted to not have blood drawn after multiple failed attempts; these individuals were excluded from the study. In Phase II of the study, conducted at the 2017 WSER, plasma samples were obtained post-race from 28 of the 52 consented runners (Figure 1), with 4/28 (14.3%) being female. Mean age was 41 years [95% CI = 37–45, range = 27–59]. One of 28 pre-race plasma samples could not be obtained due to multiple failed phlebotomy attempts. Seventeen runners did not finish the race and an additional 7 either did not present to the finish line tent to have their blood drawn or phlebotomy was unsuccessful. Fourteen control samples (Figure 1) of which 2 (14.3%) were female. Mean age was 50 (95% CI 44–56, range = 30–69). 3.3.2. PC Levels in Race Participants vs. Non-athletic Controls Targeted lipidomics of PCs in runners’ pre-race plasma were compared with the levels of non-athletic controls (Figure 4). 41 were found to be significantly higher in runners than controls (FDR < 0.05) and four were found to be significantly lower (FDR < 0.05). Targeted lipidomics of PCs in runners’ post-race plasma were compared with the levels of non-athletic controls (Figure 4). 61 were found to be significantly higher in the runners than the controls (FDR < 0.05) and 2 were found to be significantly lower (FDR < 0.05). All four PCs identified in 2016 as being associated with faster finish time were found to be elevated in participants vs. controls either from pre-race or post-race samples or both. 5/6 PCs identified in 2017 as being associated with finish time were also elevated in participants vs. controls again either pre-race, post-race or both. Figure 3. Individual pre- and post-race PC levels according to 161-km race finish time. Bright blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of correlation using correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 3. Individual pre- and post-race PC levels according to 161-km race finish time. Bright blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of correlation using correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). 3.3. Phase II: Targeted Lipidomics In 2017, based on the above In 2017, based on the above results from 2016, we performed targeted lipidomics of PCs in pre-and post-race serum of participating ultramarathon runners and a control, “non-athletic” group. and post-race serum of participating ultramarathon runners and a control, “non-athletic” group. 3.3.1. PC Levels and 161-km Finish Time 3.3.1. PC Levels and 161-km Finish Time In targeted lipidomics of PCs in runne In targeted lipidomics of PCs in runners’ pre-race plasma, two PCs (PCs 42:4 or 42:5 and PC 44:4 or 44:5) (Figure 3) were found to be significantly higher in faster finishers (FDR < 0.05). In targeted lipidomics of PCs in runner’s post-race plasma, four PCs (37:4, 38:7, 40:6A, and 42:5A) were found to be significantly higher in faster finishers (FDR < 0.05) (Figure 3). None of these specific PCs corresponded with the PCs significantly correlated in 2016. 53/85 PCs were found to significantly change (FDR < 0.05) in level over the course of the race with 8/85 (9.4%) decreased in level and 45/85 (52.9%) increased. or 44:5) (Figure 3) were found to be significantly higher in faster finishers (FDR < 0.05). In targeted lipidomics of PCs in runner’s post-race plasma, four PCs (37:4, 38:7, 40:6A, and 42:5A) were found to be significantly higher in faster finishers (FDR < 0.05) (Figure 3). None of these specific PCs corresponded with the PCs significantly correlated in 2016. 53/85 PCs were found to significantly change (FDR < 0.05) in level over the course of the race with 8/85 (9.4%) decreased in level and 45/85 (52.9%) increased. Figure 3. Individual pre- and post-race PC levels according to 161-km race finish time. Bright blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of correlation using correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). 3.2. Phase I: Non-targeted Metabolomics In 2016, non-targeted metabolomics analysis was performed using post-race serum from the 39 participants. Of 427 known compounds detected, four were significantly associated with finish time (FDR < 0.05) with these being PCs 40:8, 38:5 A, o-32:0 and PC 40:4 or 40:5 (Figure 2). Sports 2020, 8, 44 5 of 9 Figure 2. Individual post-race metabolite levels according to 161-km race finish time. Dark blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 2. Individual post-race metabolite levels according to 161-km race finish time. Dark blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 2. Individual post-race metabolite levels according to 161-km race finish time. Dark blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG ffi i t (t t f t t l i il it ) Figure 2. Individual post-race metabolite levels according to 161-km race finish time. Dark blue = higher in faster finishers (FDR < 0.05). Light blue = non-significantly higher in faster finishers. Pink = non-significantly lower in faster runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). 5 of 9 Sports 2020, 8, 44 KEGG coef 3.3. Phase II: Targeted Lipidomics In 2017, based on the above 3.4. Phase II: Ch 4. Discussion Choline in runners’ plasma was found to decrease significantly from pre- to post-race (p < 0.0001); the mean ± SD for choline in pre-race samples was 289,252 ± 74,430 counts/s and post-race samples 154,449 ± 28,371 counts/s. Pre-race runners’ choline differed significantly from controls (t = −9.03); the mean ± SD for choline in controls was 138,504 ± 32,119 counts/s. Post-race runners’ choline did not differ significantly from controls (p = 0.129). Additionally, faster finish time was associated with lower levels of post-race plasma choline (p = 0.028;). Finish time was not significantly related to pre-race choline levels (p = 0.539). 4. Discussion The most important finding of this study is the apparent relationship between faster ultramarathon finish time and higher levels of certain phosphatidylcholines. This was found both in the non-targeted metabolomics portion of this study and subsequently using targeted metabolomics The most important finding of this study is the apparent relationship between faster ultramarathon finish time and higher levels of certain phosphatidylcholines. This was found both in the non-targeted metabolomics portion of this study and subsequently using targeted metabolomics in a different group of runners the following year. Furthermore, ultramarathon runner participants had significantly higher PC levels than non-athletic controls for most of the PCs measured. These findings are consistent with those of a study by Bye et al. [4], which found VO2max to be highly correlated with PC levels using whole blood lipidomic analysis. These findings are also consistent with Mastrokolias et al. [10], who found lower PC levels in a chronic neuromuscular disease population, with the lowest levels among those with greater disability. Newsom et al. [12] found the PC levels in skeletal muscle to be significantly higher in athletes than in participants with obesity or with type 2 diabetes. Additional studies have supported these findings with an inverse relationship between PC levels and obesity [13] and type 2 diabetes [14]. These findings taken together suggest a relationship between PC levels and regular exercise, physical fitness and/or body composition. in a different group of runners the following year. Furthermore, ultramarathon runner participants had significantly higher PC levels than non-athletic controls for most of the PCs measured. These findings are consistent with those of a study by Bye et al. [4], which found VO2max to be highly correlated with PC levels using whole blood lipidomic analysis. 3.4. Phase II: Choline Choline in runners’ plasma was found to decrease significantly from pre- to post-race (p < 0.0001); the mean ± SD for choline in pre-race samples was 289,252 ± 74,430 counts/s and post-race samples 154,449 ± 28,371 counts/s. Pre-race runners’ choline differed significantly from controls (t = −9.03); the mean ± SD for choline in controls was 138,504 ± 32,119 counts/s. Post-race runners’ choline did not differ significantly from controls (p = 0.129). Additionally, faster finish time was associated with lower levels of post-race plasma choline (p = 0.028). Finish time was not significantly related to pre-race choline levels (p = 0.539). 6 of 9 ed in Sports 2020, 8, 44 or both. 5/6 P participants s Figure 4. Individual pre- and post-race PC levels in runners compared with non-athletic controls. Bright blue = higher in runners than controls (FDR < 0.05). Red = lower in runners than controls (FDR < 0.05). Light blue = non-significantly higher in runners. Pink = non-significantly lower in runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 4. Individual pre- and post-race PC levels in runners compared with non-athletic controls. Bright blue = higher in runners than controls (FDR < 0.05). Red = lower in runners than controls (FDR < 0.05). Light blue = non-significantly higher in runners. Pink = non-significantly lower in runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 4. Individual pre- and post-race PC levels in runners compared with non-athletic controls. Bright blue = higher in runners than controls (FDR < 0.05). Red = lower in runners than controls (FDR < 0.05). Light blue = non-significantly higher in runners. Pink = non-significantly lower in runners. Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). Figure 4. Individual pre- and post-race PC levels in runners compared with non-athletic controls. Bright blue = higher in runners than controls (FDR < 0.05). Red = lower in runners than controls (FDR < 0.05). Light blue = non-significantly higher in runners. Pink = non-significantly lower in runners. 3.4. Phase II: Choline Node size reflects the magnitude of the correlation using the correlation coefficient. Linear distances between objects are calculated using the Tanimoto or KEGG coefficients (tests of structural similarity). 3.4. Phase II: Ch 4. Discussion These findings are also consistent One could hypothesize that the elevated PC levels in athletes is secondary to cellular membrane breakdown from physical exertion. PCs are indeed major components of biological cell membranes. However, though the majority of the PCs we identified significantly increased, a number of others significantly decreased over the course of the 161-km race. Additionally, we found both pre-and post-race PC levels to be higher in athletes. Consistent with this, Newsom et al. [12] found elevated PC levels in skeletal muscle samples both before and after exercise. Additionally, it would be unexpected for the most physically fit athletes to have more muscle breakdown than the less physically fit when running the same distance. These findings together suggest most of the elevation in PCs is chronic rather than acutely related to a bout of exercise. From a practical standpoint, the metabolites and metabolomic pathways associated with CRF are more likely to represent the phenotype of superior cardiovascular and/or musculoskeletal fitness than those associated with a single bout of exercise. The rise in phosphatidylcholine molecules chronically in physically fit individuals, as was shown in our study and numerous other studies [4,10,13,14], indicates that the PC pathway either plays a critical role in physical fitness or is highly associated with another critical pathway that does. As we attempt to gain insight into the molecular mechanisms behind the health benefits of exercise, the PC pathway deserves further investigation. Our study also analyzed the relationship between choline and PC levels as well as choline and ultramarathon performance. Choline is required for the synthesis of PCs [14,15] and choline 7 of 9 Sports 2020, 8, 44 supplementation has been found to improve endurance running performance [16,17]. We did find, as expected [15,18,19], that choline levels decreased from pre-to post-race. However, we did not find pre-race choline levels to be related to finish time. Interestingly, faster finish time was associated with significantly lower post-race choline levels. This would suggest a relationship between physical exertion and choline usage, as has been found in marathon running [18]. Systemic availability of choline appears to be a limiting factor in athletic performance [15,16]. The elevated plasma PC levels pre-race may be due to long-term hepatic adaptation driven by frequent choline depletion and the need to replenish acetylcholine at the neuromuscular junction. 3.4. Phase II: Ch 4. Discussion PCs may be chronically elevated to provide an additional source of choline, and thus acetylcholine, for use during exercise. Approximately 95% of the body’s choline is stored as phosphatidylcholine [20]. Choline is obtained primarily either directly through the diet or through conversion of phosphatidylcholine to choline through the phosphatidylethanolamine N-methyltransferase (PEMT) pathway [20]. Li et al. [21] found elevated choline to be associated with lower PC levels and decreased physical fitness. p y Bye et al. [4] suggest that phospholipase D (PLD), a plasma membrane enzyme responsible for the hydrolysis of PC to choline, may be more active in sedentary individuals than athletes. This would result in higher choline and lower PCs in sedentary adults, and the reverse in athletes, which is generally consistent with our results. However, we did unexpectedly find significantly increased choline concentrations pre-race in athletes compared to the controls. This may be due to increased dietary choline availability before the race; indeed, fasting has been shown to decrease plasma choline levels [7]. Our participants were likely to be in a well-fed state prior to an ultramarathon. Unlike our study, the study by Bye et al. [4] required fasting of both participants and controls. There are several limitations of this study. First, due to the limited size of the ultramarathon participant pool and available funding, we had a relatively small participant number for both phases of the study. This small number of participants increased our risk of a Type II statistical error, or not detecting significant differences between metabolites related to performance. This seems likely to have occurred given the vast majority of PCs was higher in faster finishers but did not reach statistical significance. Second, our performance endpoint of finish time was unlikely to have been perfectly matched with level of physical fitness as highly physically fit individuals may have suffered injuries or non-fitness related setbacks which slowed their finish time. Third, information on our control subjects was limited to sex, race, age range and that they were “non-athletic”. The control subjects’ plasma samples were also obtained at a different time and location. It is worth mentioning that, even though our two study phases were an entire year apart from each other, we found consistent results with regards to PC levels both years, which was reassuring. Author Contributions: Conceptualization, R.H.W. and T.B.H.; methodology, R.H.W., T.B.H. and K.C.; software, R.H.W. and S.L.T.; validation, T.B.H. and S.L.T.; formal analysis, T.B.H., S.L.T. and K.C.; investigation, T.B.H., A.E.W. and K.C.; resources, R.H.W.; data curation, T.B.H., A.E.W. and K.C.; writing—original draft preparation, T.B.H.; writing—review and editing, A.E.W., R.H.W., K.C., T.B.H. and S.L.T.; visualization, T.B.H.; supervision, R.H.W.; project administration, R.H.W. and T.B.H.; funding acquisition, T.B.H. and R.H.W. All authors have read and agreed to the published version of the manuscript. Funding: This research was funded by The Western States Endurance Run Foundation and the Napa Medical Research Foundation and supported by the National Center for Advancing Translational Sciences, National Institutes of Health, through grant number UL1 TR001860. References 1. Ross, R.; Blair, S.; Steven, N.; Arena, R.; Church, T.S.; Després, J.P.; Franklin, B.A.; Haskell, W.L.; Levine, B.D.; Myers, J.; et al. Importance of Assessing Cardiorespiratory Fitness in Clinical Practice: A Case for Fitness as a Clinical Vital Sign: A Scientific Statement from the American Heart Association. Circulation 2016, 134, e653–e699. [CrossRef] [PubMed] 1. Ross, R.; Blair, S.; Steven, N.; Arena, R.; Church, T.S.; Després, J.P.; Franklin, B.A.; Haskell, W.L.; Levine, B.D.; Myers, J.; et al. Importance of Assessing Cardiorespiratory Fitness in Clinical Practice: A Case for Fitness as a Clinical Vital Sign: A Scientific Statement from the American Heart Association. Circulation 2016, 134, e653–e699. [CrossRef] [PubMed] 2. Weiss, R.H.; Kim, K. Metabolomics in the study of kidney diseases. Nat. Rev. Nephrol. 2011, 8, 22–23. [CrossRef] [PubMed] 2. Weiss, R.H.; Kim, K. Metabolomics in the study of kidney diseases. Nat. Rev. Nephrol. 2011, 8, 22–23. [CrossRef] [PubMed] 3. Nieman, D.C.; Mitmesser, S.H. Potential impact of nutrition on immune system recovery from heavy exertion: A metabolomics perspective. Nutrients 2017, 9, 513. [CrossRef] [PubMed] 3. Nieman, D.C.; Mitmesser, S.H. Potential impact of nutrition on immune system recovery from heavy exertion: A metabolomics perspective. Nutrients 2017, 9, 513. [CrossRef] [PubMed] 4. Bye, A.; Vettukattil, R.; Aspenes, S.T.; Giskeødegård, G.F.; Gribbestad, I.S.; Wisløff, U.; Bathen, T.F. Serum Levels of Choline-Containing Compounds Are Associated with Aerobic Fitness Level: The HUNT-Study. PLoS ONE 2012, 7, e42330. [CrossRef] [PubMed] 4. Bye, A.; Vettukattil, R.; Aspenes, S.T.; Giskeødegård, G.F.; Gribbestad, I.S.; Wisløff, U.; Bathen, T.F. Serum Levels of Choline-Containing Compounds Are Associated with Aerobic Fitness Level: The HUNT-Study. PLoS ONE 2012, 7, e42330. [CrossRef] [PubMed] 5. Floegel, A.; Wientzek, K.; Bachlechener, U.; Jacobs, S.; Drogan, D.; Prehn, C.; Adamski, J.; Krumsiek, J.; Pischon, T.; Boeing, H.; et al. Linking diet, physical activity, cardiorespiratory fitness and obesity to serum metabolite networks: Findings from a population-based study. Int. J. Obes. 2014, 38, 1388–1396. [CrossRef] [PubMed] 6. Lewis, G.D.; Farrell, L.; Wood, M.J.; Martinovic, M.; Arany, Z.; Rowe, G.C.; Souza, A.; Cheng, S.; Yang, E.; Shi, X.; et al. Metabolic signatures of exercise in human plasma. Sci. Trans. Med. 2010, 2, 33–37. [CrossRef] [PubMed] 7. Muhsen, A.A.; Burleigh, M.; Daskalaki, E.; Zhang, T.; Easton, C.; Watson, D.G. Metabolomic profiling of submaximal exercise at a standardized relative intensity in healthy adults. Metabolites 2016, 6, 9. [CrossRef] [PubMed] 8. 5. Conclusions Our study found PC levels to be higher in faster 161-km ultramarathon finishers and higher in runners vs. non-athletic controls. Higher levels of a number of PCs are associated with faster 161-km ultramarathon finish times. Additionally, nearly all PCs were found to be significantly higher in ultramarathon runners, both before and after running an ultramarathon, than in non-athletic controls Future studies should attempt to elucidate the role of individual PCs in endurance sports performance, physical fitness and overall health. Author Contributions: Conceptualization, R.H.W. and T.B.H.; methodology, R.H.W., T.B.H. and K.C.; software, R.H.W. and S.L.T.; validation, T.B.H. and S.L.T.; formal analysis, T.B.H., S.L.T. and K.C.; investigation, T.B.H., A.E.W. and K.C.; resources, R.H.W.; data curation, T.B.H., A.E.W. and K.C.; writing—original draft preparation, T.B.H.; writing—review and editing, A.E.W., R.H.W., K.C., T.B.H. and S.L.T.; visualization, T.B.H.; supervision, R.H.W.; project administration, R.H.W. and T.B.H.; funding acquisition, T.B.H. and R.H.W. All authors have read and agreed to the published version of the manuscript. Funding: This research was funded by The Western States Endurance Run Foundation and the Napa Medical Research Foundation and supported by the National Center for Advancing Translational Sciences, National Institutes of Health, through grant number UL1 TR001860. 8 of 9 Sports 2020, 8, 44 Sports 2020, 8, 44 Acknowledgments: We thank Marko Bodor, MD for his editorial help with the manuscript and John Diana, John Fors, Sonja Wilkey, Michael Weiss, Robert Bowers, Susan Henning, Brian Toedebusch, Jim Milner, and Steven Stern for their help with data acquisition. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. References Zafeiridis, A.; Chatziioannou, A.C.; Sarivasiliou, H.; Kyparos, A.; Nikolaidis, M.G.; Vrabas, I.S.; Theodoridis, G.A.; Pechlivanis, A.; Zoumpoulakis, P.; Baskakis, C.; et al. Global metabolic stress of isoeffort continuous and high intensity interval aerobic exercise: A comparative 1H NMR metabonomic study. J. Proteome Res. 2016, 15, 4452–4463. [CrossRef] [PubMed] 9. Danaher, J.; Gerber, T.; Wellard, R.M.; Stathis, C.G.; Cooke, M.B. The use of metabolomics to monitor simultaneous changes in metabolic variables following supramaximal low volume high intensity exercise. Metabolomics 2016, 12, 7. [CrossRef] 10. Mastrokolias, A.; Pool, R.; Mina, E.; Hettne, K.M.; van Duijn, E.; van der Mast, R.C.; van Ommen, G.; Hoen, P.; Prehn, C.; van Roon-Mom, W.; et al. Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples. Metabolomics 2016, 12, 137. [CrossRef] [PubMed] 11. Plumhoff, E.A.; Masoner, D.; Dale, J.D. Preanalytic Laboratory Errors: Identification and Prevention. Available online: http://preq.in/images/Mayo.pdf (accessed on 15 February 2020). 12. Newsom, S.A.; Brozinick, J.T.; Kiseljak-Vassiliades, K.; Strauss, A.N.; Bacon, S.D.; Kerege, A.A.; Bui, H.H.; Sanders, P.; Siddall, P.; Thomas, M.; et al. Skeletal muscle phosphatidylcholine and phosphatidylethanolamine are related to insulin sensitivity and respond to acute exercise in humans. J. Appl. Physiol. 2016, 120, 1355–1363. [CrossRef] [PubMed] Wallner, S.; Schmitz, G. Pasmalogens: The neglected regulatory and scavenging lipid species. Chem. Phys Lipids 2011, 164, 573–589. [CrossRef] [PubMed] 14. Floegel, A.; Stefan, N.; Yu, Z.; Muhlenbruch, K.; Drogan, D.; Joost, H.G.; Roden, M.; Fritsche, A.; Häring, H.-U.; de Angelis, M.H.; et al. Identification of serum metabolites associated with risk of type 2 diabetes using targeted metabolomics approach. Diabetes 2013, 62, 639–648. [CrossRef] [PubMed] 15. Kennedy, E.P.; Weiss, S.B. The function of cytidine coenzymes in the biosynthesis of phospholipids. J. Biol. Chem. 1956, 222, 193–214. [PubMed] 9 of 9 Sports 2020, 8, 44 16. Sandage, B.W.; Sabounjian, R.N.; White, R.; Wurtman, R.J. Choline citrate may enhance athletic performance. Physiologist 1992, 35, 236. 17. Jäger, R.; Purpura, M.; Kingsley, M. Phospholipids and sports performance. J. Int. Soc. Sports Nutr. 2007, 4, 5. [CrossRef] [PubMed] 18. Conlay, L.A.; Wurtman, R.J.; Blusztajn, J.K.; Coviella, I.L.G.; Maher, T.J.; Evoniuk, G.E. Decreased Plasma Choline Concentrations in Marathon Runners. N. Engl. J. Med. 1986, 315, 892. [PubMed] 19. Conlay, L.A.; Sabounjian, L.A.; Wurtman, R.J. Exercise and Neuromodulators: Choline and Acetylcholine in Marathon Runners. Int. J. Sports Med. 1992, 13, S141–S142. [CrossRef] [PubMed] 20. Lin, J.C.; Gant, N. Chapter 2.3—The Biochemistry of Choline. References In Magnetic Resonance Spectroscopy; Academic Press: Cambridge, MA, USA, 2014; pp. 104–110. 21. Li, Z.; Vance, D.E. Thematic Review Series: Glycerolipids. Phosphatidylcholine and choline homeostasis. J. Lipid Res. 2008, 49, 1187–1194. [CrossRef] [PubMed] © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
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English
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An Efficient Metal-free and Catalyst-free C-S/C-O Bond Formation Strategy: Synthesis of Pyrazole Conjugated Thioamides and Amides
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Address: Address: 1Department of Chemistry, Dr B R Ambedkar National Institute of Technology (NIT) Jalandhar, 144027, Punjab, India, 2Central Revenues Control Laboratory, New Delhi-110012, India, 3Department of Chemistry, Central University of Punjab, Bathinda, 151401, Punjab, India, and 4Department of Chemistry, National Institute of Technology (NIT) Manipur, Imphal, 795004, India Abstract An operationally simple and metal-free approach is described for the synthesis of pyrazole-tethered thioamide and amide conju- gates. The thioamides were generated by employing a three-component reaction of diverse pyrazole C-3/4/5 carbaldehydes, second- ary amines, and elemental sulfur in a single synthetic operation. The advantages of this developed protocol refer to the broad sub- strate scope, metal-free and easy to perform reaction conditions. Moreover, the pyrazole C-3/5-linked amide conjugates were also synthesized via an oxidative amination of pyrazole carbaldehydes and 2-aminopyridines using hydrogen peroxide as an oxidant. An efficient metal-free and catalyst-free C–S/C–O bond- formation strategy: synthesis of pyrazole-conjugated thioamides and amides Full Research Paper Open Access Address: 1Department of Chemistry, Dr B R Ambedkar National Institute of Technology (NIT) Jalandhar, 144027, Punjab, India, 2Central Revenues Control Laboratory, New Delhi-110012, India, 3Department of Chemistry, Central University of Punjab, Bathinda, 151401, Punjab, India, and 4Department of Chemistry, National Institute of Technology (NIT) Manipur, Imphal, 795004, India Email: Virender Singh* - virender.singh@cup.edu.in * Corresponding author Keywords: C–S/O bond formation; metal-free; oxidative amidation; pyrazole carbaldehydes; sulfur insertion; thioamides Beilstein J. Org. Chem. 2023, 19, 231–244. https://doi.org/10.3762/bjoc.19.22 Received: 24 December 2022 Accepted: 15 February 2023 Published: 02 March 2023 Associate Editor: D. Spring © 2023 Sharma et al.; licensee Beilstein-Institut. License and terms: see end of document. Full Research Paper Open Access Address: 1Department of Chemistry, Dr B R Ambedkar National Institute of Technology (NIT) Jalandhar, 144027, Punjab, India, 2Central Revenues Control Laboratory, New Delhi-110012, India, 3Department of Chemistry, Central University of Punjab, Bathinda, 151401, Punjab, India, and 4Department of Chemistry, National Institute of Technology (NIT) Manipur, Imphal, 795004, India Email: Virender Singh* - virender.singh@cup.edu.in * Corresponding author Keywords: C–S/O bond formation; metal-free; oxidative amidation; pyrazole carbaldehydes; sulfur insertion; thioamides Beilstein J. Org. Chem. 2023, 19, 231–244. https://doi.org/10.3762/bjoc.19.22 Received: 24 December 2022 Accepted: 15 February 2023 Published: 02 March 2023 Associate Editor: D. Spring © 2023 Sharma et al.; licensee Beilstein-Institut. License and terms: see end of document. Results and Discussion Initially, the synthesis of pyrazole C-3/4/5 carbaldehydes and 4-iodopyrazole-3-carbaldehydes was achieved by employing the recently reported procedures [77-80]. Thereafter, the pyra- zole-3-carbaldehyde 1, morpholine (C) and elemental sulfur were selected as the model substrates towards the preparation of pyrazole-linked thioamide derivatives. To begin with, an exper- iment was executed with model reactants in the presence of cat- alytic amounts of β-cyclodextrin (β-CD) [81] under aqueous conditions at room temperature as well as under heating at 100 °C (entries 1 and 2, Table 1). Unfortunately, the model reactants remained unreacted and similar observations were re- corded using a mixture of H2O/MeOH 1:4, and methanol as a reaction medium (entries 3 and 4, Table 1). Moreover, it was also investigated that various organic solvents in combination with β-CD at room temperature were inactive towards accom- plishment of this transformation (entries 5–8, Table 1). Fortu- nately, when the reaction was performed in CH3CN at 60 °C; a polar product was obtained, which was isolated after a short silica gel column chromatography (entry 9, Table 1). To our delight, the spectroscopic analysis revealed the structure of the purified product as (5-(4-fluorophenyl)-1-phenyl-1H-pyrazol-3- yl)(morpholino)methanethione (1C), which was obtained in 64% isolated yield. Encouraged by these preliminary results, we next assembled the model reactants in DMF as a solvent in the presence of β-CD at 60 °C. It was learned that the outcome of the reaction was slightly better (reaction time was reduced and the yield of the product 1C was increased to 70%, entry 10, Table 1), which indicated the superiority of DMF over other solvents. Subsequently, we examined the effects of La(OTf)3 as a catalyst in combination with DMF as a solvent. However, the targeted prototype 1C was obtained only in 20% yield at 60 °C after 24 hours of reaction time (entries 11 and 12, Table 1). Next, ZnO nanoparticles were screened for the thioamidation of pyrazole-3-carbaldehyde. The desired thioamide-conjugated pyrazole 1C was afforded in 30% yield, as the starting sub- strates were not completely consumed even after 24 hours of reaction time (entry 13, Table 1). On the basis of the experi- mental results above, we concluded that CH3CN and DMF were the ideal solvents for this transformation towards the effective formation of the product. As per literature reports, K2CO3 shows remarkable efficacy in various organic transformations [82]. Introduction chemicals [4-6], chemicals, and pharmaceutical industries. Moreover, recent findings have affirmed the potential of the pyrazole nucleus as CB1 receptor antagonists [7], estrogen re- ceptor ligands [8], A2A receptor antagonists [9], and DNA intercalating agents [10]. Importantly, pyrazole derivatives can be traced in a spectrum of well-established drug candidates of During the past years, the significance of pyrazole chemistry has been notably escalated which is attributed to the discovery of their amazing biological properties. Among the heterocyclic molecules, pyrazoles are considered as privileged scaffolds for the design and construction of pharmacologically relevant com- pounds [1-3]. Their effectiveness has been witnessed in agro- 231 231 Beilstein J. Org. Chem. 2023, 19, 231–244. [32], synthetic reagents in multicomponent reactions [33,34], and guanylating agents [35]. various categories with diverse therapeutic properties such as antipyretic [11], antibacterial [12], anticancer [13-15], antiviral [16], analgesic [17], antioxidants, antimicrobial [18], antidia- betic, anticonvulsant [19], antihelminthic [20], and antiar- rhythmic activities. The pyrazole nucleus is a core unit in several FDA-approved marketed drugs such as sildenafil [21- 23], celebrex [24,25], difenamizole [26], epirizole [27], rimona- bant [28] etc. (Figure 1). Additionally, pyrazole derivatives hold a prominent position in the field of materials science as a result of their numerous applications in products like brightening agents [29], semiconductors [30], and organic light-emitting diodes [31]. Substituted pyrazoles are also of considerable interest because of their synthetic utility as chiral auxiliaries The installation of a thioamide functionality has attracted an immense attention in medicinal chemistry, due to various bio- logical activities [36-39]. Accordingly, a broad spectrum of effective and useful methods has been acknowledged in the lit- erature for their preparation [40-42]. In this regard, a review article by Jagodzinski et al. based on the examination of a massive virtual library synthesized with frequently occurring pharmacophores originating from drug components comes to the conclusion that the thioamide linkage establishes an intriguing class of biologically significant compounds amenable Figure 1: Representative drug molecules based on pyrazole, thioamide, and amide derivatives. Figure 1: Representative drug molecules based on pyrazole, thioamide, and amide derivatives. 232 Beilstein J. Org. Chem. 2023, 19, 231–244. reactivity profile [65-76]. To the best of our knowledge, the syntheses of pyrazole C-3/4/5-linked thioamide and amide conjugates have not been reported. Herein, we report an operationally simple one-pot procedure for the preparation of highly diversified thioamide and amide-linked pyrazole ana- logues. to combinatorial chemistry [43]. Introduction This organic functional group is found in vital biological and pharmaceutical molecules such as N-cyclohexylethyl-ETAsV [44], carbimazole, methimazole, propylthiouracil [45], and closthioamide [46] (Figure 1). More- over, they also find widespread applications as intermediates for the construction of five- and six-membered heterocyclic com- pounds [47] and active pharmaceutical ingredients [48] such as fenclosic acid, fentiazac, and febuxostate. Results and Discussion Hence, this reaction was also examined under the influ- ences of K2CO3 (2 equiv) in CH3CN, but the reaction condi- Similarly, in contemporary chemistry, the amide functionality is one of the most studied functional groups. Specifically, this moiety is vital for the formation of the backbone of structural proteins and enzymes [49]. The amide linkage is present in several naturally occurring compounds and it is also one of the most productive functional groups in current pharmaceutical drugs [50,51]. As prime examples; atorvastatin [52], valsartan [53] and N-cyclohexylethyl-ETAsV are successfully utilized to treat various life challenging diseases (Figure 1). Accordingly, as a part of our ongoing research project, it was planned to in- corporate thioamide and amide functional groups into a pyra- zole framework to develop new scaffolds. An extensive literature survey revealed that several approaches are well-documented for the construction of the thioamide func- tionality including base-catalyzed Willgerodt–Kindler reaction [54], Kindler reaction in the presence of sulfated tungstate [55], thionation of amides using thionating reagents [56] and thiona- tion of amides using TsCl (4-toluenesulfonyl chloride) or PSCl3-mediated Beckmann rearrangement [57]. Although, these protocols are useful and have exhibited wide applications in organic synthesis (Figure 2), the scope of these reported methods may suffer from drawbacks such as harsh reaction conditions, use of expensive reagents, prolonged reaction times, low product yields, and cumbersome product isolation proce- dures [58-62]. In the recent past, our group also reported two methods towards the exploration of elemental sulfur for the for- mation of a sulfur-containing framework; however, these methods suffer from some drawbacks such as lack of diversity in starting substrate, need of base/catalyst and limitation of starting reagents [63,64]. Our current work was completed with the exploration of the position of the pyrazole ring like C-3, C-4 and C-5 and we also employed the pyrazole-based AXB3s (4-iodo-C-3 and 4-iodo-C-5). Moreover, we also disclosed the synthesis of pyrazole C-3/C-5 amide conjugates. Fascinated by the immense pharmacological profiles of pyra- zole, thioamide and amide derivatives, it was envisaged to develop a practical approach towards the synthesis of pyrazole- thioamide and pyrazole-amide conjugates. Elemental sulfur was explored as a sulfurating reagent for the generation of thioamides owing to its nontoxic, odorless nature and versatile 233 Beilstein J. Org. Chem. 2023, 19, 231–244. Figure 2: Previous and present findings for the synthesis of thioamide derivatives. Figure 2: Previous and present findings for the synthesis of thioamide derivatives. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Entry Catalyst/reagent (equiv) solventb temp. (oC) time (h) isolated yieldc,d 1 β-CD (0.2) H2O rt 7 NRe 2 β-CD (0.2) H2O 100 7 NR 3 β-CD (0.2) MeOH rt 7 NR 4 β-CD (0.2) H2O/MeOH 1:4 rt 7 NR 5 β-CD (0.2) DCE rt 7 NR 6 β-CD (0.2) AcOH rt 3 NR 7 β-CD (0.2) CH3CN rt 3 NR 8 β-CD (0.2) toluene rt 3 NR 9 β-CD (0.2) CH3CN 60 7 64% 10 β-CD (0.2) DMF 60 3 70% 11 La(OTf)3 (0.1) DMF rt 24 NR 12 La(OTf)3 (0.1) DMF 60 24 20% 13 ZnO NPs (0.1) DMF rt 24 30% + 1 14 K2CO3 (2.0) CH3CN rt 18 NR 15 K2CO3 (1.0) DMF rt 24 80% 16 K2CO3 (1.0) DMF 70 1 82% 17 K2CO3 (2.0) DMF 70 1 80% 18 K2CO3 (3.0) DMF 70 1 79% 19 – DMF 70 2 90% 20 – DMSO 70 7 88% 21 – NMP 70 7 85% 22 – neat 70 29 13% + 1 aAll reactions were optimized with 0.07 mmol (1 equiv) of 1, 0.08 mmol (1.1 equiv) of C, 0.28 mmol (4 equiv) of sulfur in 2 mL of solvent; ball reactions were performed in anhydrous solvents (except entries 1, 2, 4, and 22); cisolated yields of the purified product 1C; dNR = no reaction; ethe model sub- strates remained intact. aAll reactions were optimized with 0.07 mmol (1 equiv) of 1, 0.08 mmol (1.1 equiv) of C, 0.28 mmol (4 equiv) of sulfur in 2 mL of solvent; ball reactions were performed in anhydrous solvents (except entries 1, 2, 4, and 22); cisolated yields of the purified product 1C; dNR = no reaction; ethe model sub- strates remained intact. 5–8 using the optimal conditions as illustrated in Scheme 2. The pyrazole-4-carbaldehydes 5–8 were found to be suitable sub- strates for this operation. It is pertinent to mention that the sub- strate 5 reacted with cyclic secondary amines A–C to yield the designed prototypes in moderate to good yields (49–76%), whereas thiomorpholine (D) delivered the thioamide conjugate 5D in low yield (34%). During the preparation of pyrazole C-4- conjugated thioamides 5A–E and 6–8C, it was also noticed that when the reaction was exercised with morpholine (C), the reac- tion was accomplished in lesser time (36 min to 1 h) as com- pared to other secondary amines. Results and Discussion Figure 2: Previous and present findings for the synthesis of thioamide derivatives. yield (90%) after 2 hours of reaction time (entry 19, Table 1). This experiment indicated that the K2CO3 was not mandatory for the desired thioamidation reaction. After that, DMSO and NMP were also screened as solvents in the absence of base, but a longer reaction time was required for similar transformation (7 h) (entries 20 and 21, Table 1). A reaction of model sub- strates under neat conditions delivered product 1C in poor yield (entry 22, Table 1). Based on these screening experiments, it was concluded that the reaction proceeded smoothly in DMF as the reaction medium at 70 °C for 2 hours, and these were considered as the optimal conditions for further investigation of the scope of the developed strategy (entry 19, Table 1). tions were inactive towards the formation of pyrazole-tethered thioamide 1C (entry 14, Table 1). Surprisingly, when the reac- tion was carried out in DMF at ambient temperature, the desired product 1C was obtained in 80% yield (entry 15, Table 1). However, the same reaction under heating conditions at 70 °C, afforded the desired product 1C in 82% yield with a drastic reduction in the reaction time to 1 hour (entry 16, Table 1). Moreover, an increase in the amount of base had a negligible effect on the yield of the thioamide conjugate 1C (entries 17 and 18, Table 1). To check the role of K2CO3, we executed a model reaction in DMF without base (K2CO3) and it was noted that pyrazole-linked thioamide 1C was obtained in excellent 234 Beilstein J. Org. Chem. 2023, 19, 231–244. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Having established the optimal reaction conditions, we explored the generality and the scope of this metal- and catalyst-free ap- proach by employing pyrazole C-3 carbaldehydes 1–4, second- ary amines A–E and elemental sulfur as substrates. It was ob- served that the reaction conditions were compatible with differ- ent pyrazole-3-carbaldehydes and various secondary amines for the synthesis of pyrazole C-3-tethered thioamides 1A–E and 2–4C with the yield ranging from 53–90% (Scheme 1). Notably, 1-methylpiperazine (E) afforded the product in low yield (53%). The electronic nature of the substituents located at the N-1 and C-5 positions of the pyrazole ring exerted unnotice- able impacts on the yields of the desired products. Having established the optimal reaction conditions, we explored the generality and the scope of this metal- and catalyst-free ap- proach by employing pyrazole C-3 carbaldehydes 1–4, second- ary amines A–E and elemental sulfur as substrates. It was ob- served that the reaction conditions were compatible with differ- ent pyrazole-3-carbaldehydes and various secondary amines for the synthesis of pyrazole C-3-tethered thioamides 1A–E and 2–4C with the yield ranging from 53–90% (Scheme 1). Notably, 1-methylpiperazine (E) afforded the product in low yield (53%). The electronic nature of the substituents located at the N-1 and C-5 positions of the pyrazole ring exerted unnotice- able impacts on the yields of the desired products. To further validate the synthetic flexibility of this methodology, we employed pyrazole C-5 carbaldehydes 9 and 10 for the syn- thesis of thioamide conjugates. It was noticed that the pyrazole- Encouraged by these successful results, we further investigated the thioamidation reaction of various pyrazole-4-carbaldehydes 235 Beilstein J. Org. Chem. 2023, 19, 231–244. Scheme 1: Synthesis of pyrazole C-3-tethered thioamides. Scheme 1: Synthesis of pyrazole C-3-tethered thioamides. To find out more information about the mechanistic route of the reaction, we performed a control experiment in the presence of TEMPO as a radical scavenger as depicted in Scheme 6. The reaction of pyrazole-3-carbaldehyde 1, pyrrolidine (A) and elemental sulfur in the presence of 1.1 equiv of TEMPO deliv- ered the targeted product in 76% yield. On the basis of this ex- periment, it was concluded that TEMPO did not affect the progress of the reaction and the formation of product 1A. Hence, a radical mechanism of the reaction may be ruled out. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a 5-carbaldehydes 9 and 10 were more reactive as compared to pyrazole C-3 and C-4 carbaldehydes, leading to the formation of products 9C and 10A in high yields (67–71%) within 1 hour of reaction time as depicted in Scheme 3. Thereafter, the substrates 4-iodopyrazole-3-carbaldehydes were further investigated for this metal- and catalyst-free sulfur inser- tion reaction as shown in Scheme 4. It was found that 4-iodo- pyrazole C-3 carbaldehydes 11 and 12 were also tolerated well for this thioamidation process and furnished the anticipated products 11A,B,E, and 12C in good to excellent yields (58–92%) within 40 min to 4 hours. The successful synthesis of pyrazole C-3/4/5-tethered thioamides inspired us to generate analogous pyrazole-pyridine conjugates having an amide linkage. For this purpose, 5-(4- fluorophenyl)-1-phenyl-1H-pyrazole-3-carbaldehyde (1) and 2-aminopyridine (F) were selected as the model reactants to explore this transformation. Initially, we conducted an oxida- tive amidation reaction of pyrazole-3-carbaldehyde 1 and 2-aminopyridine (F) in the presence of TBHP in DMSO as a solvent at 130 °C (entry 1, Table 2). However, the reaction re- quired longer time (20 h) for the completion, and afforded a product in 29% yield only. It was realized that the isolated prod- To check the industrial scope of the current protocol, we con- ducted a gram-scale reaction between pyrazole-3-carbaldehyde 1, morpholine (C) and elemental sulfur under the standard reac- tion conditions as depicted in Scheme 5. It was noticed that this one-pot operation was completed within 2.5 hours and smoothly furnished the desired product, (5-(4-fluorophenyl)-1-phenyl- 1H-pyrazol-3-yl)(morpholino)methanethione (1C) in 86% yield. 236 Beilstein J. Org. Chem. 2023, 19, 231–244. Beilstein J. Org. Chem. 2023, 19, 231–244. 237 Scheme 2: Synthesis of pyrazole C-4-tethered thioamides. Scheme 3: Metal- and catalyst-free preparation of pyrazole C-5-linked thioamide conjugates. uct was the desired product, 5-(4-fluorophenyl)-1-phenyl-N- (pyridin-2-yl)-1H-pyrazole-3-carboxamide (1F), as analyzed by spectroscopic data. Next, we screened other organic solvents including DMF, CH3CN, THF, and MeOH to improve the yield of the desired product 1F, but only a slight improvement in the yield was ob- Scheme 2: Synthesis of pyrazole C-4-tethered thioamides. Scheme 2: Synthesis of pyrazole C-4-tethered thioamides. Scheme 2: Synthesis of pyrazole C-4-tethered thioamides. Scheme 3: Metal- and catalyst-free preparation of pyrazole C-5-linked thioamide conjugates. Scheme 3: Metal- and catalyst-free preparation of pyrazole C-5-linked thioamide conjugates. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Next, we screened other organic solvents including DMF, CH3CN, THF, and MeOH to improve the yield of the desired product 1F, but only a slight improvement in the yield was ob- Next, we screened other organic solvents including DMF, CH3CN, THF, and MeOH to improve the yield of the desired product 1F, but only a slight improvement in the yield was ob- uct was the desired product, 5-(4-fluorophenyl)-1-phenyl-N- (pyridin-2-yl)-1H-pyrazole-3-carboxamide (1F), as analyzed by spectroscopic data. 237 Beilstein J. Org. Chem. 2023, 19, 231–244. Scheme 4: Synthesis of 4-iodopyrazole C-3-tethered thioamides. Scheme 4: Synthesis of 4-iodopyrazole C-3-tethered thioamides. Scheme 5: Gram-scale scope of the current protocol. Scheme 6: Control experiment. served (entries 2–5, Table 2). The oxidant TBHP (10 equiv) failed to deliver the anticipated product in good yield (36%, entry 6, Table 2). Similar results were obtained with H2O2 (25.0 equiv) under neat reaction conditions (entry 7, Table 2). Next, we performed the oxidative amidation reaction with 5.0 equiv of H2O2 in DMSO as the reaction medium under heating, whereas, a poor yield of the product was obtained (entry 8, Table 2). Moreover, different combinations of H2O2 and DMSO were examined for the oxidative amidation of pyra- zole-3-carbaldehyde 1 (entries 9 and 10, Table 2). Interestingly, a significant reduction in the reaction time was detected with 25 equiv as well as 10 equiv of H2O2. Next, we screened DMF, CH3CN, THF, and MeOH (2.0 equiv) with 10.0 equiv of H2O2 to increase the yield of the designed prototype 1F. An accept- Scheme 4: Synthesis of 4-iodopyrazole C-3-tethered thioamides. Scheme 4: Synthesis of 4-iodopyrazole C-3-tethered thioamides. Scheme 5: Gram-scale scope of the current protocol. Scheme 6: Control experiment. Scheme 6: Control experiment Scheme 6: Control experiment. served (entries 2–5, Table 2). The oxidant TBHP (10 equiv) failed to deliver the anticipated product in good yield (36%, entry 6, Table 2). Similar results were obtained with H2O2 (25.0 equiv) under neat reaction conditions (entry 7, Table 2). Next, we performed the oxidative amidation reaction with 5.0 equiv of H2O2 in DMSO as the reaction medium under heating, whereas, a poor yield of the product was obtained (entry 8, Table 2). Moreover, different combinations of H2O2 and DMSO were examined for the oxidative amidation of pyra- zole-3-carbaldehyde 1 (entries 9 and 10, Table 2). Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Interestingly, a significant reduction in the reaction time was detected with 25 equiv as well as 10 equiv of H2O2. Next, we screened DMF, CH3CN, THF, and MeOH (2.0 equiv) with 10.0 equiv of H2O2 to increase the yield of the designed prototype 1F. An accept- (entry 8, Table 2). Moreover, different combinations of H2O2 and DMSO were examined for the oxidative amidation of pyra- zole-3-carbaldehyde 1 (entries 9 and 10, Table 2). Interestingly, a significant reduction in the reaction time was detected with 25 equiv as well as 10 equiv of H2O2. Next, we screened DMF, CH3CN, THF, and MeOH (2.0 equiv) with 10.0 equiv of H2O2 to increase the yield of the designed prototype 1F. An accept- 238 Beilstein J. Org. Chem. 2023, 19, 231–244. Table 2: Optimization of the reaction conditions towards the formation of pyrazole-pyridine conjugates having an amide linkage.a Table 2: Optimization of the reaction conditions towards the formation of pyrazole-pyridine conjugates having an amide linkage.a Table 2: Optimization of the reaction conditions towards the formation of pyrazole-pyridine conjugates having an amide linkage.a Entry Oxidant (equiv) Solventb Temp. (°C) Time (h) Isolated yieldc 1 TBHP (3.0) DMSO 130 20 29% 2 TBHP (3.0) DMF (10.0 equiv) 130 10 35% + 1 3 TBHP (3.0) CH3CN (10.0 equiv) 100 10 37% + 1 4 TBHP (3.0) THF (10.0 equiv) 100 9 42% + 1 5 TBHP (3.0) MeOH (10.0 equiv) 80 8 40% + 1 6 TBHP (10.0) DMSO (2.0 equiv) 70 18 36% + 1 7 H2O2 (25.0) neat rt 19 30% 8 H2O2 (5.0) DMSO 70 19 10% + 1 9 H2O2 (25.0) DMSO (2.0 equiv) 70 5 40% 10 H2O2 (10.0) DMSO (2.0 equiv) 70 4 50% 11 H2O2 (10.0) DMF (2.0 equiv) 70 8 33% + 1 12 H2O2 (10.0) CH3CN (2.0 equiv) 70 5 56% 13 H2O2 (10.0) THF (2.0 equiv) 70 7 58% 14 H2O2 (10.0) MeOH (2.0 equiv) 70 6 45% 15 H2O2 (10.0) CH3CN 70 4 54% 16 H2O2 (10.0) THF 70 4 61% aAll the optimization reactions were conducted with 0.07 mmol (1.0 equiv) of 1, 0.08 mmol (1.1 equiv) of F; ball the reactions were examined in dry solvents (except entry 7); cisolated yields of 1F. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a aAll the optimization reactions were conducted with 0.07 mmol (1.0 equiv) of 1, 0.08 mmol (1.1 equiv) of F; ball the reactions were examined in dry solvents (except entry 7); cisolated yields of 1F. To check the synthetic versatility of this oxidative amidation approach, we tested the scope of the methodology with pyra- zole-5-carbaldehydes 9 and 10. Using this method, 3-(4-chloro- phenyl)-1-phenyl-N-(pyridin-2-yl)-1H-pyrazole-5-carboxamide (10F) was produced in good yield (62%), while 9F was gener- ated in low yield (36%) as depicted in Scheme 8. able enhancement was observed in the yield of the desired com- pound (58%) 1F (entries 11–14, Table 2). After that, we sub- jected all the starting substrates to an excess amount of CH3CN and THF as reaction solvents (entries 15 and 16, Table 2). It was noticed from these two experiments that THF was the out- standing solvent for our current transformation (entry 16, Table 2). From the above screening experiments, it was con- cluded that 10.0 equiv of hydrogen peroxide in THF at 70 °C proved to be the optimal conditions for the construction of the pyrazole-pyridine conjugate with an amide linkage (entry 16, Table 2). Based on the current experimental observations and literature reports [62,83] a plausible mechanistic pathway is outlined in Scheme 9 for the formation of the thioamide and amide-linked pyrazole derivatives 1C and 1F. It is proposed that initially pyrazole-3-carbaldehyde 1 reacted with morpholine (C) to furnish the iminium intermediate 13. Meanwhile, the intermedi- ate polysulfide 14 formed by the nucleophilic attack of morpho- line (C) on elemental sulfur may react with the intermediate 13 to afford another intermediate 15, which undergoes oxidation to release the thioamide-tethered pyrazole 1C. On the other hand, the pyrazole carbaldehyde 1 forms imine intermediate 16 by condensation with 2-aminopyridine. Thereafter, a nucleophilic attack of H2O2 on the imine carbon may afford the intermedi- ate 17. Finally, the loss of a water molecule from the intermedi- Having the optimized conditions in hand, we employed pyra- zole-3-carbaldehydes 1 and 4 for the reaction with different 2-aminopyridines F and G towards the preparation of amide tethers as displayed in Scheme 7. The pyrazole-3-carbalde- hydes 1 and 4 reacted efficiently with 2-aminopyridine (F) to deliver the pyrazole conjugated amides 1F and 4F in good yields (61 and 70%), whereas, in the case of 5-nitro-2-amino- pyridine (G), the anticipated product 1G was obtained in low yield (34%). 239 Beilstein J. Org. Table 1: Screening of reaction conditions towards the formation of pyrazole-conjugated thioamide.a Chem. 2023, 19, 231–244. Scheme 7: H2O2-mediated synthesis of pyrazole-pyridine conjugates with amide tethers. Scheme 7: H2O2-mediated synthesis of pyrazole-pyridine conjugates with amide tethers. Scheme 8: Synthesis of pyrazole-pyridine conjugates 9F and 10F having amide tethers. Scheme 8: Synthesis of pyrazole-pyridine conjugates 9F and 10F having amide tethers. ate 17 may generate the pyrazole-pyridine conjugate with amide linkage 1F. salient features of the current protocol may be attributed to the broad substrate scope, commercially available secondary amines, operational simplicity, multicomponent character of the reaction, easy isolation of products, short reaction time, and good to excellent yields of the desired molecules. More- over, a practical synthetic utility of pyrazole-3/5-carbaldehydes has been explored through the formation of amide bond- tethered pyrazole-pyridine conjugates. This developed methodology was successfully carried out by employing commercially available substituted 2-aminopyridines and hydrogen peroxide as an oxidant. The biological evaluation p General information All chemicals and reagents were purchased from Sigma- Aldrich, Acros, Avera Synthesis, Spectrochem Pvt. Ltd., and used without further purification. Commercially available an- hydrous solvents (THF, DMF, benzene, toluene, MeOH, EtOH, and CH2Cl2 Spectrochem) were used in the reactions. Thin- layer chromatography (TLC) was performed using precoated aluminum plates purchased from E. Merck (silica gel 60 PF254, 0.25 mm). Column chromatography was performed using Spec- trochem silica gel (60–120 mesh). Melting points were deter- mined in open capillary tubes on the Precision Digital melting point apparatus (LABCO make) containing silicone oil, and the results are uncorrected. IR spectra (neat) were recorded on an Agilent FTIR spectrophotometer. 1H and 13C NMR spectra were recorded either on an Avance III Bruker or a JEOL JNM- ECS spectrometer at operating frequencies of 200/400/500 Conclusion In summary, a simple, straightforward and efficient approach for the construction of biologically interesting highly diversi- fied pyrazole-linked thioamide and amide conjugates has been developed. The pyrazole C-3/4/5-tethered thioamide conjugates were prepared via a one-pot reaction between highly diversi- fied pyrazole carbaldehydes, cyclic secondary amines, and elemental sulfur under metal and catalyst-free conditions. The 240 Beilstein J. Org. Chem. 2023, 19, 231–244. Scheme 9: A tentative mechanism for the formation of pyrazole conjugates with thioamide and amide linkage. Scheme 9: A tentative mechanism for the formation of pyrazole conjugates with thioamide and amide linkage. Scheme 9: A tentative mechanism for the formation of pyrazole conjugates with thioamide and amide linkage of the thioamide and amide conjugates is underway in our labo- ratory. MHz (1H) and or 100/125/150 MHz (13C) as indicated in the individual spectra using TMS as an internal standard. Elemental analyses were performed on a Carlo-Erba 108 or an Elementar Vario EL III microanalyzer. The room temperature varied be- tween 25 °C and 30 °C. The multiplicities in the 1HNMR spec- tra are presented as s for singlet, d for doublet, dd for doublet of the doublet, td for a triplet of doublet, t for triplet and m for multiplet. The multiplicity in the 13C NMR spectra is presented as d for doublet. Funding Funding S.S. acknowledges the Ministry of Human Resource Develop- ment (MHRD), New Delhi, India, and CSIR, New Delhi for Junior Research Fellowships. S. K. and V. S. gratefully acknowledges the financial support in the form of research grants from CSIR (02 (0202) /14/EMR-II), DST (CS-361/ 2011), and DST-FIST (CSI-228/2011) New Delhi (India). Procedure for the synthesis of (5-(4-fluorophenyl)-1-phenyl- 1H-pyrazol-3-yl)(pyrrolidin-1-yl)methanethione (1A) through control experiment: In a dry round-bottomed flask, pyrazole-3-carbaldehyde 1 (0.05 g, 0.19 mmol), pyrrolidine (A, 0.015 g, 0.21 mmol), and sulfur powder (0.024 g, 0.75 mmol) were added to dry DMF (2 mL) at room temperature. The reac- tion flask was heated at 70 °C in an oil bath for 3.5 h. After completion of the reaction, as monitored by the TLC, cold water was added to the reaction mixture at room temperature which resulted in the formation of a precipitate. The product was collected by filtration under reduced pressure using a Büchner funnel and further purified by silica gel column chromatogra- phy (60–120 mesh silica gel) using hexane and ethyl acetate as an eluent (80:20, v/v) to give final product 1A (0.049 g, 76%; Rf 0.68, (hexane/EtOAc 70:30, v/v)). ORCID® iDs Shubham Sharma - https://orcid.org/0000-0002-9657-6623 Sunit Kumar - https://orcid.org/0000-0003-3266-0217 Naveen Banyal - https://orcid.org/0000-0001-6288-7469 Chandi C. Malakar - https://orcid.org/0000-0002-9478-017X Virender Singh - https://orcid.org/0000-0003-4242-5421 Preprint A non-peer-reviewed version of this article has been previously published as a preprint: https://doi.org/10.3762/bxiv.2022.92.v1 Typical procedure for the synthesis of compounds 1F, 1G, 4F, 9F, and 10F as exemplified for 5-(4-fluorophenyl)-1-phe- nyl-N-(pyridin-2-yl)-1H-pyrazole-3-carboxamide (1F): To a stirred solution of compound 1 (0.10 g, 0.37 mmol) and 2-aminopyridine (F, 0.04 g, 0.42 mmol) in dry THF, H2O2 (0.087 mL, 3.73 mmol) was added dropwise at room tempera- ture and the reaction mixture was heated at 70 °C for 20 h. Upon completion of the reaction, as monitored by TLC, the reaction mixture was cooled to room temperature, water was added, and the product was extracted with ethyl acetate (3 × 25 mL). The combined organic layers were washed with Supporting Information Gram-scale synthesis of (5-(4-fluorophenyl)-1-phenyl-1H- pyrazol-3-yl)(morpholino)methanethione (1C): A 50 mL round-bottomed flask was charged with pyrazole-3-carbalde- hyde 1 (1 g, 3.74 mmol), morpholine (C, 0.36 g, 4.14 mmol), and elemental sulfur (0.48 g, 15 mmol) in dry DMF (10 mL) followed by heating of the reaction mixture at 70 °C for 2.5 h. On completion of the reaction, as determined by TLC, the reac- tion content was cooled to room temperature and poured into ice-cold water under stirring, which resulted in the formation of a precipitate. The solid was collected under vacuum using a Büchner funnel and further purified by silica gel column chro- matography (60–120 mesh silica gel) using hexane and ethyl acetate (80:20, v/v) as an eluent to give the analytically pure product 1C (1.18 g from 1 g, 86%; Rf 0.19 (hexane/EtOAc 90:10, v/v)). Supporting Information File 1 Analytical data and copies of spectra. [https://www.beilstein-journals.org/bjoc/content/ supplementary/1860-5397-19-22-S1.pdf] Supporting Information File 1 Analytical data and copies of spectra. [https://www.beilstein-journals.org/bjoc/content/ supplementary/1860-5397-19-22-S1.pdf] Experimental procedures General procedure for the synthesis of compounds 1A–E, 2–4C, 5A–E, 6–8C, 9C, 10A, 11A,B, 11E, and 12C as exem- plified for (5-(4-fluorophenyl)-1-phenyl-1H-pyrazol-3- yl)(morpholino)methanethione (1C): In a dry round-bottomed flask, pyrazole-3-carbaldehyde 1 (0.20 g, 0.75 mmol), morpho- line (C, 0.072 g, 0.83 mmol), and sulfur powder (0.096 g, 3 mmol) were added to dry DMF (2 mL) at room temperature. The reaction flask was heated at 70 °C in an oil bath for 1 h. After completion of the reaction, as determined by TLC, cold 241 Beilstein J. Org. Chem. 2023, 19, 231–244. water was added to the reaction mixture at room temperature which resulted in precipitation of the product. The product was collected by filtration under reduced pressure using a Büchner funnel and further purified by silica gel column chromatogra- phy (60–120 mesh silica gel) using hexane and ethyl acetate as an eluent (80:20, v/v) to give the final product 1C (0.247 g, 90%; Rf 0.19 (hexane/EtOAc 90:10, v/v)). brine, dried over anhydrous Na2SO4, and concentrated under reduced pressure to afford crude product 1F. This material was purified by silica gel column chromatography (60–120 mesh) using hexane and ethyl acetate as an eluent (95:05, v/v) to get the analytically pure product 1F (0.082 g, 61%; Rf 0.63, (hexane/EtOAc 90:10, v/v)). Acknowledgements S. S. and V. S. gratefully acknowledges the CIL, Central University of Punjab, Bathinda and Advanced Material and Research Centre (AMRC) at the Indian Institute of Technology Mandi, HP, India for recording the spectroscopic data. References 1. Da Costa, L.; Scheers, E.; Coluccia, A.; Casulli, A.; Roche, M.; Di Giorgio, C.; Neyts, J.; Terme, T.; Cirilli, R.; La Regina, G.; Silvestri, R.; Mirabelli, C.; Vanelle, P. J. Med. Chem. 2018, 61, 8402–8416. doi:10.1021/acs.jmedchem.8b00931 2. Karrouchi, K.; Radi, S.; Ramli, Y.; Taoufik, J.; Mabkhot, Y. N.; Al-aizari, F. A.; Ansar, M. Molecules 2018, 23, 134–220. doi:10.3390/molecules23010134 3. Nandi, G. C.; Singh, M. S.; Ila, H.; Junjappa, H. Eur. J. Org. Chem. 2012, 967–974. doi:10.1002/ejoc.201101397 1. Da Costa, L.; Scheers, E.; Coluccia, A.; Casulli, A.; Roche, M.; Di Giorgio, C.; Neyts, J.; Terme, T.; Cirilli, R.; La Regina, G.; Silvestri, R.; Mirabelli, C.; Vanelle, P. J. Med. Chem. 2018, 61, 8402–8416. doi:10.1021/acs.jmedchem.8b00931 2. Karrouchi, K.; Radi, S.; Ramli, Y.; Taoufik, J.; Mabkhot, Y. N.; Al-aizari, F. A.; Ansar, M. Molecules 2018, 23, 134–220. doi:10.3390/molecules23010134 3. Nandi, G. C.; Singh, M. S.; Ila, H.; Junjappa, H. Eur. J. Org. Chem. 2012, 967–974. doi:10.1002/ejoc.201101397 1. Da Costa, L.; Scheers, E.; Coluccia, A.; Casulli, A.; Roche, M.; Di Giorgio, C.; Neyts, J.; Terme, T.; Cirilli, R.; La Regina, G.; Silvestri, R.; Mirabelli, C.; Vanelle, P. J. Med. Chem. 2018, 61, 8402–8416. doi:10.1021/acs.jmedchem.8b00931 2. Karrouchi, K.; Radi, S.; Ramli, Y.; Taoufik, J.; Mabkhot, Y. N.; Al-aizari, F. A.; Ansar, M. Molecules 2018, 23, 134–220. doi:10.3390/molecules23010134 3. Nandi, G. C.; Singh, M. S.; Ila, H.; Junjappa, H. Eur. J. Org. Chem. 2012, 967–974. doi:10.1002/ejoc.201101397 242 Beilstein J. Org. Chem. 2023, 19, 231–244. 24.Penning, T. D.; Talley, J. J.; Bertenshaw, S. R.; Carter, J. S.; Collins, P. W.; Docter, S.; Graneto, M. J.; Lee, L. F.; Malecha, J. W.; Miyashiro, J. M.; Rogers, R. S.; Rogier, D. J.; Yu, S. S.; Anderson, G. D.; Burton, E. G.; Cogburn, J. N.; Gregory, S. A.; Koboldt, C. M.; Perkins, W. E.; Seibert, K.; Veenhuizen, A. W.; Zhang, Y. Y.; Isakson, P. C. J. Med. Chem. 1997, 40, 1347–1365. doi:10.1021/jm960803q 4. Yoshikawa, Y.; Katsuta, H.; Kishi, J.; Yanase, Y. J. Pestic. Sci. (Tokyo, Jpn.) 2011, 36, 347–356. doi:10.1584/jpestics.g10-70 Miyashiro, J. M.; Rogers, R. S.; Rogier, D. J.; Yu, S. S.; 5. Numata, A.; Tanima, D.; Ando, M.; Iwawaki, Y. Pyrazole derivatives and pesticides. US2013/0338367A1, Dec 19, 2013. Anderson, G. D.; Burton, E. G.; Cogburn, J. N.; Gregory, S. A.; Koboldt, C. M.; Perkins, W. E.; Seibert, K.; Veenhuizen, A. W.; Zhang, Y. Y.; Isakson, P. C. J. Med. Chem. 1997, 40, 1347–1365. 6. References Wang, M.-M.; Huang, H.; Shu, L.; Liu, J.-M.; Zhang, J.-Q.; Yan, Y.-L.; Zhang, D.-Y. Beilstein J. Org. Chem. 2020, 16, 233–247. doi:10.3762/bjoc.16.25 25.Baumann, M.; Baxendale, I. R.; Ley, S. V.; Nikbin, N. Beilstein J. Org. Chem. 2011, 7, 442–495. doi:10.3762/bjoc.7.57 7. Wang, H.; Duffy, R. A.; Boykow, G. C.; Chackalamannil, S.; 7. Wang, H.; Duffy, R. A.; Boykow, G. C.; Chackalamannil, S.; Madison, V. S. J. Med. Chem. 2008, 51, 2439–2446. doi:10.1021/jm701519h Beilstein J. Org. Chem. 2011, 7, 442–495. doi:10.3762/bjoc.7.57 26.Kameyama, T.; Nabeshima, T. Neuropharmacology 1978, 17, 249–256. doi:10.1016/0028-3908(78)90108-9 249–256. doi:10.1016/0028-3908(78)90108-9 27.Chen, C.-M.; Kositprapa, U. Pharmaceutical formulations containing a non-steroidal antiinflammatory drug and a proton pump inhibitor. US Patent US6869615B2, March 22, 2005. 8. Naoum, F.; Kasiotis, K. M.; Magiatis, P.; Haroutounian, S. A. Molecules 2007, 12, 1259–1273. doi:10.3390/12071259 9. Slee, D. H.; Moorjani, M.; Zhang, X.; Lin, E.; Lanier, M. C.; Chen, Y.; 9. Slee, D. H.; Moorjani, M.; Zhang, X.; Lin, E.; Lanier, M. C.; Chen, Y.; Rueter, J. K.; Lechner, S. M.; Markison, S.; Malany, S.; Joswig, T.; Santos, M.; Gross, R. S.; Williams, J. P.; Castro-Palomino, J. C.; Crespo, M. I.; Prat, M.; Gual, S.; Díaz, J.-L.; Jalali, K.; Sai, Y.; Zuo, Z.; Yang, C.; Wen, J.; O’Brien, Z.; Petroski, R.; Saunders, J. J. Med. Chem. 2008, 51, 1730–1739. doi:10.1021/jm701187w Rueter, J. K.; Lechner, S. M.; Markison, S.; Malany, S.; Joswig, T.; 28.Kotagiri, V. K.; Suthrapu, S.; Reddy, J. M.; Rao, C. P.; Bollugoddu, V.; Bhattacharya, A.; Bandichhor, R. Org. Process Res. Dev. 2007, 11, 910–912. doi:10.1021/op700110b Santos, M.; Gross, R. S.; Williams, J. P.; Castro-Palomino, J. C.; Crespo, M. I.; Prat, M.; Gual, S.; Díaz, J.-L.; Jalali, K.; Sai, Y.; Zuo, Z.; 29.Wang, M.; Zhang, J.; Liu, J.; Xu, C.; Ju, H. J. Lumin. 2002, 99, 79–83. doi:10.1016/s0022-2313(01)00204-6 Yang, C.; Wen, J.; O’Brien, Z.; Petroski, R.; Saunders, J. J. Med. Chem. 2008, 51, 1730–1739. doi:10.1021/jm701187 10.Lauria, A.; Abbate, I.; Patella, C.; Gambino, N.; Silvestri, A.; 10.Lauria, A.; Abbate, I.; Patella, C.; Gambino, N.; Silvestri, A.; Barone, G.; Almerico, A. M. Tetrahedron Lett. 2008, 49, 5125–5128. doi:10.1016/j.tetlet.2008.06.104 30.Burschka, J.; Kessler, F.; Nazeeruddin, M. K.; Grätzel, M. Chem. Mater. 2013, 25, 2986–2990. doi:10.1021/cm400796u Chem. Mater. 2013, 25, 2986–2990. doi:10.1021/cm400796u 31.Chou, P.-T.; Chi, Y. Chem. – Eur. J. 2007, 13, 380–395. 31.Chou, P.-T.; Chi, Y. Chem. – Eur. J. 2007, 13, 380–395. doi:10.1002/chem.200601272 11.Chandra, T.; Garg, N.; Lata, S.; Saxena, K. K.; Eur. J. Med. Chem. doi:10.1021/acschembio.8b01022 19.Chimenti, F.; Bolasco, A.; Manna, F.; Secci, D.; Chimenti, P.; Befani, O.; Turini, P.; Giovannini, V.; Mondovì, B.; Cirilli, R.; La Torre, F. J. Med. Chem. 2004, 47, 2071–2074. doi:10.1021/jm031042b 19.Chimenti, F.; Bolasco, A.; Manna, F.; Secci, D.; Chimenti, P.; 41.Kumar, K.; Konar, D.; Goyal, S.; Gangar, M.; Chouhan, M.; 41.Kumar, K.; Konar, D.; Goyal, S.; Gangar, M.; Chouhan, M.; Rawal, R. K.; Nair, V. A. ChemistrySelect 2016, 1, 3228–3231. doi:10.1002/slct.201600601 References 2010, 45, 1772–1776. doi:10.1016/j.ejmech.2010.01.009 11.Chandra, T.; Garg, N.; Lata, S.; Saxena, K. K.; Kumar, A. Eur. J. Med. Chem. 2010, 45, 1772–1776. doi:10 1016/j ejmech 2010 01 009 11.Chandra, T.; Garg, N.; Lata, S.; Saxena, K. K.; Kumar, A. 11.Chandra, T.; Garg, N.; Lata, S.; Saxena, K. K.; Kumar, A. Eur J Med Chem 2010 45 1772–1776 Eur. J. Med. Chem. 2010, 45, 1772–1776. 32.Molteni, G.; Buttero, P. D. Tetrahedron: Asymmetry 2005, 16, 32.Molteni, G.; Buttero, P. D. Tetrahedron: Asymmetry 2005, 16, 1983–1987. doi:10.1016/j.tetasy.2005.04.014 1983–1987. doi:10.1016/j.tetasy.2005.04.014 doi:10.1016/j.ejmech.2010.01.009 33.Tu, X.-J.; Hao, W.-J.; Ye, Q.; Wang, S.-S.; Jiang, B.; Li, G.; Tu, S.-J. 33.Tu, X.-J.; Hao, W.-J.; Ye, Q.; Wang, S.-S.; Jiang, B.; Li, G.; Tu, S.-J. J. Org. Chem. 2014, 79, 11110–11118. doi:10.1021/jo502096t 12.Abdel-Hafez, E.-S. M. N.; Abuo-Rahma, G. E.-D. A. A.; Abdel-Aziz, M.; Radwan, M. F.; Farag, H. H. Bioorg. Med. Chem. 2009, 17, 3829–3837. doi:10.1016/j.bmc.2009.04.037 J. Org. Chem. 2014, 79, 11110–11118. doi:10.1021/jo502096t Radwan, M. F.; Farag, H. H. Bioorg. Med. Chem. 2009, 17, 3829–3837. doi:10.1016/j.bmc.2009.04.037 34.Yadav, P.; Awasthi, A.; Gokulnath, S.; Tiwari, D. K. J. Org. Chem. 34.Yadav, P.; Awasthi, A.; Gokulnath, S.; Tiwari, D. K. J. 2021, 86, 2658–2666. doi:10.1021/acs.joc.0c02696 2021, 86, 2658–2666. doi:10.1021/acs.joc.0c02696 13.Lv, P.-C.; Li, H.-Q.; Sun, J.; Zhou, Y.; Zhu, H.-L. Bioorg. Med. Chem. 2010, 18, 4606–4614. doi:10.1016/j.bmc.2010.05.034 35.Castagnolo, D.; Schenone, S.; Botta, M. Chem. Rev. 2011, 111, 5247–5300. doi:10.1021/cr100423x 35.Castagnolo, D.; Schenone, S.; Botta, M. Chem. Rev. 2011, 111, 5247 5300 d i 10 1021/ 100423 35.Castagnolo, D.; Schenone, S.; Botta, M. Chem. Rev. 2011, 1 14.Balbi, A.; Anzaldi, M.; Macciò, C.; Aiello, C.; Mazzei, M.; Gangemi, R.; Castagnola, P.; Miele, M.; Rosano, C.; Viale, M. Eur. J. Med. Chem. 2011, 46, 5293–5309. doi:10.1016/j.ejmech.2011.08.014 5247–5300. doi:10.1021/cr100423x 5247–5300. doi:10.1021/cr100423x 36.Bartlett, P. A.; Spear, K. L.; Jacobsen, N. E. Biochemistry 1982, 21, 1608–1611. doi:10.1021/bi00536a022 36.Bartlett, P. A.; Spear, K. L.; Jacobsen, N. E. Biochemistry 1982, 36.Bartlett, P. A.; Spear, K. L.; Jacobsen, N 1608–1611. doi:10.1021/bi00536a022 2011, 46, 5293–5309. doi:10.1016/j.ejmech.2011.08.014 1608–1611. doi:10.1021/bi00536a022 15.Hura, N.; Naaz, A.; Prassanawar, S. S.; Guchhait S. K; Pand 15.Hura, N.; Naaz, A.; Prassanawar, S. S.; Guchhait S. K; Panda, D. ACS Omega 2018, 3, 1955–1969. doi:10.1021/acsomega.7b01784 37.Yu, K.-L.; Torri, A. F.; Luo, G.; Cianci, C.; Grant-Young, K.; Danetz, S.; Tiley, L.; Krystal, M.; Meanwell, N. A. Bioorg. Med. Chem. Lett. 2002, 12, 3379–3382. doi:10.1016/s0960-894x(02)00761-8 ACS Omega 2018, 3, 1955–1969. doi:10.1021/acsomega.7b0178 16.El-Sabbagh, O. I.; Baraka, M. M.; Ibrahim, S. doi:10.1002/slct.201600601 42.Chaubey, T. N.; Borpatra, P. J.; Sharma, A.; Pandey, S. K. Org. Lett. 2022, 24, 8062–8066. doi:10.1021/acs.orglett.2c03371 doi:10.1021/jm031042b Partridge, F. A.; Forman, R.; Bataille, C. J. R.; Wynne, G. M.; Nick, M 20.Partridge, F. A.; Forman, R.; Bataille, C. J. R.; Wynne, G. M.; Nick, M.; Russell, A. J.; Else, K. J.; Sattelle, D. B. Beilstein J. Org. Chem. 2020, 16, 1203–1224. doi:10.3762/bjoc.16.105 43.Jagodziński, T. S. Chem. Rev. 2003, 103, 197–228. doi:10.1021/cr0200015 References M.; Pannecouque, C.; Andrei, G.; Snoeck, R.; Balzarini, J.; Rashad, A. A. Eur. J. Med. Chem. 2009, 44, 3746–3753. doi:10.1016/j.ejmech.2009.03.038 16.El-Sabbagh, O. I.; Baraka, M. M.; Ibrahim, S. M.; Pannecouque, C.; Andrei, G.; Snoeck, R.; Balzarini, J.; Rashad, A. A. Eur. J. Med. Chem. 38.Gannon, M. K.; Holt, J. J.; Bennett, S. M.; Wetzel, B. R.; Loo, T. W.; Bartlett, M. C.; Clarke, D. M.; Sawada, G. A.; Higgins, J. W.; Tombline, G.; Raub, T. J.; Detty, M. R. J. Med. Chem. 2009, 52, 3328–3341. doi:10.1021/jm900253g Andrei, G.; Snoeck, R.; Balzarini, J.; Rashad, A. A. Eur. J. Med. Chem. 2009, 44, 3746–3753. doi:10.1016/j.ejmech.2009.03.038 2009, 44, 3746–3753. doi:10.1016/j.ejmech.2009.03.038 17.Hall, A.; Billinton, A.; Brown, S. H.; Clayton, N. M.; Chowdhury, A.; Giblin, G. M. P.; Goldsmith, P.; Hayhow, T. G.; Hurst, D. N.; Kilford, I. R.; Naylor, A.; Passingham, B.; Winyard, L. Bioorg. Med. Chem. Lett. 2008, 18, 3392–3399. doi:10.1016/j.bmcl.2008.04.018 3328–3341. doi:10.1021/jm900253g Kilford, I. R.; Naylor, A.; Passingham, B.; Winyard, L. 39.Banala, S.; Süssmuth, R. D. ChemBioChem 2010, 11, 1335–13 39.Banala, S.; Süssmuth, R. D. ChemBioChem 2010, 11, 1335–1337. doi:10.1002/cbic.201000266 Bioorg. Med. Chem. Lett. 2008, 18, 3392–3399. 40.Mahanta, N.; Szantai-Kis, D. M.; Petersson, E. J.; Mitchell, D. A. ACS Chem. Biol. 2019, 14, 142–163. doi:10.1021/acschembio.8b01022 40.Mahanta, N.; Szantai-Kis, D. M.; Petersson, E. J.; Mitchell, D. ACS Chem. Biol. 2019, 14, 142–163. 18.Sharshira, E. M.; Hamada, N. M. M. Molecules 2012, 17, 4962–4971. doi:10.3390/molecules17054962 doi:10.1021/jo0256742 57.Pathak, U.; Pandey, L. K.; Mathur, S.; Suryanarayana, M. V. S. 57.Pathak, U.; Pandey, L. K.; Mathur, S.; Suryanarayana, M. V. S. Chem. Commun. 2009, 5409–5411. doi:10.1039/b911844f Chem. Commun. 2009, 5409–5411. doi:10.1039/b911844f doi:10.1021/cr0200015 44.Bach, A.; Eildal, J. N. N.; Stuhr-Hansen, N.; Deeskamp, R.; Gottschalk, M.; Pedersen, S. W.; Kristensen, A. S.; Strømgaard, K. J. Med. Chem. 2011, 54, 1333–1346. doi:10.1021/jm1013924 21.Dale, D. J.; Dunn, P. J.; Golightly, C.; Hughes, M. L.; Levett, P. C.; Pearce, A. K.; Searle, P. M.; Ward, G.; Wood, A. S. Org. Process Res. Dev. 2000, 4, 17–22. doi:10.1021/op9900683 Org. Process Res. Dev. 2000, 4, 17–22. doi:10.1021/op9900683 J. Med. Chem. 2011, 54, 1333–1346. doi:10.1021/jm1013924 22.Dunn, P. J.; Galvin, S.; Hettenbach, K. Green Chem. 2004, 6, 43–48. doi:10.1039/b312329d 45.Nakamura, H.; Noh, J. Y.; Itoh, K.; Fukata, S.; Miyauchi, A.; Hamada, N. J. Clin. Endocrinol. Metab. 2007, 92, 2157–2162. doi:10.1210/jc.2006-2135 23.Ghozlan, S. A. S.; Badahdah, K. O.; Abdelhamid, I. A. 23.Ghozlan, S. A. S.; Badahdah, K. O.; Abdelhamid, I. A. Beilstein J. Org. Chem. 2007, 3, No. 15. doi:10.1186/1860-5397-3- 46.Lincke, T.; Behnken, S.; Ishida, K.; Roth, M.; Hertweck, C. Angew. Chem. 2010, 122, 2055–2057. doi:10.1002/ange.200906114 243 Beilstein J. Org. Chem. 2023, 19, 231–244. Beilstein J. Org. Chem. 2023, 19, 231–244. 47.Hisano, T.; Yabuta, Y. Chem. Pharm. Bull. 1973, 21, 511–517. doi:10.1248/cpb.21.511 75.Pošta, M.; Zima, V.; Poštová Slavětínská, L.; Matoušová, M.; Beier, P. Beilstein J. Org. Chem. 2022, 18, 549–554. doi:10.3762/bjoc.18.57 48.Lednicer, D. Strategies for Organic Drug Synthesis and Design; John Wiley: Hoboken, 2008. doi:10.1002/9780470399613 48.Lednicer, D. Strategies for Organic Drug Synthesis and Design; John 76.Pathania, S.; Narang, R. K.; Rawal, R. K. Eur. J. Med. Chem. 2019, 180, 486–508. doi:10.1016/j.ejmech.2019.07.043 Wiley: Hoboken, 2008. doi:10.1002/9780470399613 180, 486–508. doi:10.1016/j.ejmech.2019.07.043 49.Montalbetti, C. A. G. N.; Falque, V. Tetrahedron 2005, 61, 49.Montalbetti, C. A. G. N.; Falque, V. Tetrahedro 10827–10852. doi:10.1016/j.tet.2005.08.031 77.Sharma, S.; Paul, A. K.; Singh, V. New J. Chem. 2020, 44, 684–694. doi:10.1039/c9nj05426j 10827–10852. doi:10.1016/j.tet.2005.08.031 50.Dunetz, J. R.; Magano, J.; Weisenburger, G. A. Org. Process Res. Dev. 2016, 20, 140–177. doi:1 50.Dunetz, J. R.; Magano, J.; Weisenburger, G. A. 78.Devi, N.; Singh, D.; Sunkaria, R. K.; Malakar, C. C.; Mehra, S.; Rawal, R. K.; Singh, V. ChemistrySelect 2016, 1, 4696–4703. doi:10.1002/slct.201601133 50.Dunetz, J. R.; Magano, J.; Weisenburger, G. A. Org. Process Res. Dev. 2016, 20, 140–177. doi:10.1021/op500305s , ; g , ; g , Org. Process Res. Dev. 2016, 20, 140–177. doi:10.1021/op500305s 51.Nandi, G. C.; Samai, S.; Singh, M. S. J. Org. Chem. 2010, 75, 7785–7795. doi:10.1021/jo101572c 51.Nandi, G. C.; Samai, S.; Singh, M. S. J. Org. Chem. 2010, 75, 51.Nandi, G. C.; Samai, S.; Singh, M. S. 7785–7795. doi:10.1021/jo101572c 7785–7795. License and Terms 58.Manaka, A.; Sato, M. Synth. Commun. 2005, 35, 761–764. doi:10.1081/scc-200050393 58.Manaka, A.; Sato, M. Synth. Commun. 2005, 35, 761–764. doi:10.1021/cr0200015 doi:10.1021/jo101572c 79.Devi, N.; Shankar, R.; Singh, V. J. Heterocycl. Chem. 2018, 55, 373–390. doi:10.1002/jhet.3045 79.Devi, N.; Shankar, R.; Singh, V. J. Heterocycl. Chem. 2018, 55, 52.Lau, W. C.; Waskell, L. A.; Watkins, P. B.; Neer, C. J.; Horowitz, K.; 52.Lau, W. C.; Waskell, L. A.; Watkins, P. B.; Neer, C. J.; Horowitz, K.; Hopp, A. S.; Tait, A. R.; Carville, D. G. M.; Guyer, K. E.; Bates, E. R. Circulation 2003, 107, 32–37. doi:10.1161/01.cir.0000047060.60595.cc 80.Nag, S.; Singh, V.; Batra, S. ARKIVOC 2007, No. 14, 185–203. doi:10.3998/ark.5550190.0008.e18 80.Nag, S.; Singh, V.; Batra, S. ARKIVO doi:10.3998/ark.5550190.0008.e18 80.Nag, S.; Singh, V.; Batra, S. ARKIVOC 2007, No. 14, 1 Circulation 2003, 107, 32–37. doi:10.1161/01.cir.0000047060.60595.cc 81.Mondal, R.; Mallik, A. K. Org. Prep. Proced. Int. 2014, 46, 391–434. doi:10.1080/00304948.2014.944402 53.Abraham, I.; MacDonald, K.; Hermans, C.; Aerts, A.; Lee, C.; Brie, H.; Vancayzeele, S. Vasc. Health Risk Manage. 2011, 7, 209–235. doi:10.2147/vhrm.s9434 82.Dheer, D.; Rawal, R. K.; Singh, V.; Sangwan, P. L.; Das, P.; Shankar, R. Tetrahedron 2017, 73, 4295–4306. doi:10.1016/j.tet.2017.05.081 54.Okamoto, K.; Yamamoto, T.; Kanbara, T. Synlett 2007, 2687–2690. doi:10.1055/s-2007-991073 55.Pathare, S. P.; Chaudhari, P. S.; Akamanchi, K. G. Appl. Catal., A 83.Sankari Devi, E.; Alanthadka, A.; Tamilselvi, A.; Nagarajan, S.; Sridharan, V.; Maheswari, C. U. Org. Biomol. Chem. 2016, 14, 8228–8231. doi:10.1039/c6ob01454b 55.Pathare, S. P.; Chaudhari, P. S.; Akamanchi, K. G. Appl. Catal., A 2012, 425-426, 125–129. doi:10.1016/j.apcata.2012.03.012 55 at a e, S ; C aud a , S ; a a c , G pp Cata , 2012, 425-426, 125–129. doi:10.1016/j.apcata.2012.03.012 56.Curphey, T. J. J. Org. Chem. 2002, 67, 6461–6473. doi:10 1021/jo0256742 56.Curphey, T. J. J. Org. Chem. 2002, 67, 6461–6473. 56.Curphey, T. J. J. Org. Chem. 2002, 67, 6461–647 doi:10.1055/s-0040-1707217 72.Beletskaya, I. P.; Ananikov, V. P. Chem. Rev. 2022, 122, 72.Beletskaya, I. P.; Ananikov, V. P. Chem. Rev. 2022, 122, 16110–16293. doi:10.1021/acs.chemrev.1c00836 73.Yu, Z.; Su, J.; Huang, C.; Wei, J.; Han, D. L.; Ye, D. Q.; Li, Y. 73.Yu, Z.; Su, J.; Huang, C.; Wei, J.; Han, D. L.; Ye, D. Q.; Li, Y. Asian J. Org. Chem. 2022, 11, e202200288. doi:10.1002/ajoc.202200288 Asian J. Org. Chem. 2022, 11, e202200288. doi:10.1002/adsc.201601329 66.Nguyen, T. B. Adv. Synth. Catal. 2020, 362, 3448–3484. d i 10 1002/ d 202000535 66.Nguyen, T. B. Adv. Synth. Catal. 2020, 362, 3448–3484. 66.Nguyen, T. B. Adv. Synth. Catal. 2020, 362, 3448–3484. doi:10.1002/adsc.202000535 The definitive version of this article is the electronic one which can be found at: https://doi.org/10.3762/bjoc.19.22 66.Nguyen, T. B. Adv. Synth. Catal. 2020, 362, 3448 3484. doi:10.1002/adsc.202000535 doi:10.1002/adsc.202000535 67.Singh, M.; Awasthi, P.; Singh, V. Eur. J. Org. Chem. 2020, 1023–1041. doi:10.1002/ejoc.201901908 doi:10.1002/ejoc.201901908 68.Wu, K.; Ling, Y.; Ding, A.; Jin, L.; Sun, N.; Hu, B.; Shen, Z.; Hu, 68.Wu, K.; Ling, Y.; Ding, A.; Jin, L.; Sun, N.; Hu, B.; Shen, Z.; Hu, X. Beilstein J. Org. Chem. 2021, 17, 805–812. doi:10.3762/bjoc.17.69 u, ; g, ; g, ; J , ; Su , ; u, ; S e , ; u, Beilstein J. Org. Chem. 2021, 17, 805–812. doi:10.3762/bjoc.17.69 Beilstein J. Org. Chem. 2021, 17, 805–812. doi:10.3762/bjoc.17.6 69.Ilkin, V.; Berseneva, V.; Beryozkina, T.; Glukhareva, T.; Dianova, L.; Dehaen, W.; Seliverstova, E.; Bakulev, V. Beilstein J. Org. Chem. 2020, 16, 2937–2947. doi:10.3762/bjoc.16.243 70.Tang, Q.; Yin, X.; Kuchukulla, R. R.; Zeng, Q. Chem. Rec. 2021, 21, 893–905. doi:10.1002/tcr.202100026 71.Liu, S.; Deng, G.-J.; Huang, H. Synlett 2021, 32, 142–158. doi:10.1055/s-0040-1707217 71.Liu, S.; Deng, G.-J.; Huang, H. Synlett 2021, 32, 142–158. doi:10.1055/s-0040-1707217 doi:10.1081/scc-200050393 This is an open access article licensed under the terms of the Beilstein-Institut Open Access License Agreement (https://www.beilstein-journals.org/bjoc/terms), which is identical to the Creative Commons Attribution 4.0 International License 59.Xu, H.; Deng, H.; Li, Z.; Xiang, H.; Zhou, X. Eur. J. Org. Chem. 20 59.Xu, H.; Deng, H.; Li, Z.; Xiang, H.; Zhou, X. Eur. J. Org. Chem. 2013, 7054–7057. doi:10.1002/ejoc.201301148 , ; g, ; , ; g, ; , g , 7054–7057. doi:10.1002/ejoc.201301148 7054–7057. doi:10.1002/ejoc.201301148 60.Yin, Z.; Zheng, B. J. Sulfur Chem. 2013, 34, 527–531. 60.Yin, Z.; Zheng, B. J. Sulfur Chem. 2013, 34, 527–531. doi:10.1080/17415993.2013.765429 doi:10.1080/17415993.2013.765429 61.Wei, J.; Li, Y.; Jiang, X. Org. Lett. 2016, 18, 340–343. doi:10.1021/acs.orglett.5b03541 doi:10.1021/acs.orglett.5b03541 (https://creativecommons.org/licenses/by/4.0). The reuse of material under this license requires that the author(s), source and license are credited. Third-party material in this article could be subject to other licenses (typically indicated in the credit line), and in this case, users are required to obtain permission from the license holder to reuse the material. 62.Tayade, Y. A.; Jangale, A. D.; Dalal, D. S. ChemistrySelect 2018, 3, 8895–8900. doi:10.1002/slct.201801553 62.Tayade, Y. A.; Jangale, A. D.; Dalal, D. S. ChemistrySelect 201 8895–8900. doi:10.1002/slct.201801553 63.Sharma, S.; Malakar, C. C.; Singh, V. Asian J. Org. Chem. 2020, 9, 1857–1868. doi:10.1002/ajoc.202000390 63.Sharma, S.; Malakar, C. C.; Singh, V. Asian J. Org. Chem. 2020, 9, 1857–1868. doi:10.1002/ajoc.202000390 64.Singh, M.; Vaishali; Kumar, R.; Singh, V. ChemistrySelect 2020, 5, 5172–5179. doi:10.1002/slct.202001149 64.Singh, M.; Vaishali; Kumar, R.; Singh, V. ChemistrySelect 2020 5172–5179. doi:10.1002/slct.202001149 5172–5179. doi:10.1002/slct.202001149 65.Nguyen, T. B. Adv. Synth. Catal. 2017, 359, 1066–1130. d i 10 1002/ d 201601329 65.Nguyen, T. B. Adv. Synth. Catal. 2017, 359, 1066–1130. 65.Nguyen, T. B. Adv. Synth. Catal. 2017, 359, 1066–1130. doi:10.1002/adsc.201601329 doi:10.1002/adsc.201601329 doi:10.1002/adsc.201601329 doi:10.1002/ajoc.202200288 74.Koyanagi, A.; Murata, Y.; Hayakawa, S.; Matsumura, M.; Yasuike, S. Beilstein J. Org. Chem. 2022, 18, 1479–1487. doi:10.3762/bjoc.18.155 eilstein J. Org. Chem. 2022, 18, 1479–1487. doi:10.3762/bjoc.18.155 244
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Sex Differences in Body Ownership in Adults With Autism Spectrum Disorder
Frontiers in psychology
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Sex Differences in Body Ownership in Adults With Autism Spectrum Disorder Silvia Guerra1, Andrea Spoto1, Umberto Castiello1* and Valentina Parma2,3,4* A strong male prevalence has been observed in autism spectrum disorder (ASD) since its definition, but the behavioral manifestations of sex disparity have yet to be clarified. Here, we investigate sex differences in the perception of the Numbness Illusion (NI), a procedure based on a tactile conflict, in adults with ASD and with typical development. We aim to assess if women and men with ASD perceive NI-dependent body ownership differently and whether sex differences emerge in individuals with typical development. To elicit the NI, participants pressed their right-hand palm against the confederate’s hand and stroked with the thumb and the index finger of their left hand the joined index fingers in a synchronous or asynchronous way. Results reveal that women with ASD present a reversed and atypical pattern for the NI compared to men with ASD and a group of matched controls. In particular, women with ASD report a stronger illusion than men with ASD, that is more evident in the asynchronous conditions. In the asynchronous condition, women in the ASD group report stronger NI as compared to women and men in the Control group, whereas men with ASD only to men in the Control group. In the typical sample, the NI emerges only in the synchronous condition and no sex difference is observed. We discuss our results in terms of potential advantage of women in sociality and sensory information processing that might lead women with ASD to use different modalities to solve the illusion compared to men with ASD. In sum, these outcomes describe sex differences in individuals with ASD in the domain of illusory perception. This may be used in the future to support the characterization of the female phenotype of autism. Edited by: Mariska Esther Kret, Leiden University, Netherlands Reviewed by: Francois Quesque, INSERM U1028 Centre de Recherche en Neurosciences de Lyon, France Laura Anne Harrison, University of Southern California, United States Christiana Butera, University of Southern California, United States, in collaboration with reviewer LH *Correspondence: Umberto Castiello umberto.castiello@unipd.it Valentina Parma valentina.c.parma@gmail.com Specialty section: This article was submitted to Cognition, a section of the journal Frontiers in Psychology Keywords: autism spectrum disorders, body ownership, female phenotype, numbness illusion, sex differences Received: 11 September 2018 Accepted: 17 January 2019 Published: 04 February 2019 Keywords: autism spectrum disorders, body ownership, female phenotype, numbness illusion, sex differences ORIGINAL RESEARCH published: 04 February 2019 doi: 10.3389/fpsyg.2019.00168 Edited by: Mariska Esther Kret, Leiden University, Netherlands Citation: The RHI is an experimental paradigm that modulates the sense of body ownership by presenting incongruent sensory stimulations (i.e., looking at a rubber hand being stroked, while perceiving one’s unseen hand to be similarly touched), which generate a multisensory conflict that is solved by relocating the sense of feeling touched on one’s hand on the visible rubber hand. Several variants of RHI were developed to investigate the sense of body ownership: the virtual body illusion (Slater et al., 2008), the presentation of multiple hands (Folegatti et al., 2012) and the numbness illusion (NI; Dieguez et al., 2009; Martuzzi et al., 2015). j g In this connection, several studies based on clinical observations have suggested that high-functioning girls and women with ASD show different and less severe social and communication impairments compared to boys and men with ASD (Rivet and Matson, 2011; Werling and Geschwind, 2013a). In particular, girls and women with ASD tend to have better expressive behavior (e.g., sharing interest and/or reciprocal conversation; Lai et al., 2011; Head et al., 2014), less impaired social and communication skills (e.g., desire to interact with other individuals and/or better linguistic fluency; Carter et al., 2007) and different repetitive and stereotyped interest and/or activities (e.g., women’s interest tend to involve other people or animals rather than objects; Hiller et al., 2014; Lai et al., 2015) compared to boys and men with ASD. These greater social and communication abilities attributed as a feature of the female phenotype of ASD may help them to cope with social situations, masking some of the symptoms recognized as core symptoms of the male phenotype of ASD and causing misdiagnoses or late identification of ASD in girls and women (Wing, 1981; Attwood, 2007; Dworzynski et al., 2012; Hiller et al., 2016). The latter is an experimental paradigm that allows for the manipulation of the experience of the body-ownership of fingers (Dieguez et al., 2009). In this paradigm, two individuals (i.e., the participant and a confederate) press the palm of their hands against each other. Then, both the participant and the confederate stroke with the thumb and the index finger of their respective free hand two joint index fingers in a synchronous (i.e., the two index fingers are stroked at the same time in up and down movement) or in an asynchronous way (i.e., one finger is stroked a time). Citation: In particular, in presence of intellectual disability, male and female individuals with ASD meet the diagnostic criteria in a similar way and the ratio of ASD diagnoses is 1F:1M; however, at high IQ scores, female individuals with ASD are underrepresented (4M:1F; Van Wijngaarden-Cremers et al., 2014). In this view, it has been supposed that high IQ scores may represent a confounding factor that leads to a missed diagnosis or a misdiagnosis in girls and women with ASD (Van Wijngaarden-Cremers et al., 2014). recognizing other people’s thoughts, perspectives and mental states [i.e., theory of mind (ToM)] are a trait frequently found in individuals with ASD (Baron-Cohen et al., 1985). Developing functional motor, social and communication skills (Gallagher, 2000) and efficiently “walking in someone’s shoes” require the acquisition of the ability to differentiate the self from others and to compare the two entities. Such distinction can be achieved by developing a coherent sense of “bodily self,” which involves two distinct and interdependent aspects: agency and body ownership. Agency refers to the experience of generating and controlling actions and the events caused by them in the environment (Gallagher, 2000; David et al., 2008). Body ownership refers to “the feeling that my body belongs to me” (as in Stone et al., 2018), and to the fact that my body is different from other people’s bodies or external objects. The sense of body ownership, which origins from the integration of different sensory information (i.e., proprioceptive, tactile and visual stimuli) is present not only when we act, but also during passive movements (Van den Bos and Jeannerod, 2002) and it can be perturbed by the induction of illusions. Successful perturbation of body ownership has been achieved by presenting incongruent sensory stimulation able to shift the belonging of one body part to either external objects (e.g., a rubber object shaped like a human hand, Botvinick and Cohen, 1998; Ehrsson, 2007) or to another person’s body part (e.g., someone else’s finger, Dieguez et al., 2009; Martuzzi et al., 2015). The multisensory foundations of body ownership and its underpinnings have been usually investigated by means of the rubber hand illusion (RHI; Botvinick and Cohen, 1998). Citation: Guerra S, Spoto A, Castiello U and Parma V (2019) Sex Differences in Body Ownership in Adults With Autism Spectrum Disorder. Front. Psychol. 10:168. doi: 10.3389/fpsyg.2019.00168 Guerra S, Spoto A, Castiello U and Parma V (2019) Sex Differences in Body Ownership in Adults With Autism Spectrum Disorder. Front. Psychol. 10:168. doi: 10.3389/fpsyg.2019.00168 Autism spectrum disorder (ASD) is defined as a heterogeneous disorder characterized by impairments in social interactions, communication, and repetitive and stereotyped behaviors, which is more commonly diagnosed in male than in female individuals (4M: 1F; Werling and Geschwind, 2013a,b; Halladay et al., 2015). The male prevalence in ASD is known from the origin of the disorder. Indeed, both Kanner (1943) and Asperger (1944) reported that the children with February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 1 Sex Differences in Body Ownership in ASD Guerra et al. autism that they examined were exclusively boys. Consequently, the majority of the research on ASD has chiefly focused on male participants. As a consequence, the female phenotype of ASD is still poorly understood and research results in that area are highly inconsistent (Head et al., 2014). To date, these accounts have been used to explain the mechanisms underlying sex disparity in ASD with some studies suggesting that the female phenotype of ASD may be the result of innate characteristics that protect girls and women from ASD and make them less vulnerable to develop the core symptoms of the disorder (female protective effect or FPE; Robinson et al., 2013; Werling and Geschwind, 2013a). Other studies have advanced that female and male individuals are equally predisposed to develop ASD at the genetic level, but female individuals may have some factors - at the cognitive or/and neurobiological level – enabling them to better compensate for this risk during the lifespan (e.g., Skuse, 2007). Moreover, it has been proposed that sex differences in the development of the cognitive profile may lead to different manifestations of ASD in women and men (Carter et al., 2007). From the studies that have addressed sex disparity in ASD, it becomes evident that intellectual abilities play a role in facilitating the diagnosis of ASD in female individuals. Frontiers in Psychology | www.frontiersin.org Participants The sample for the two experiments (also previously included in Guerra et al., 2017) consisted of 108 participants. Sample size for the group∗sex interaction∗conditions was estimated by means of the G∗Power 3.1 software (Faul et al., 2009) to have a power ≥95%, even in the case of a medium-small effect size (0.22). In Experiment 1, 39 adults with high-functioning ASD were enrolled (ASD; 29 M and 10 F; mean age ± 24.72; age range 19–31 years). In Experiment 2, 69 age- and FSIQ-matched control adults with typical development were recruited (43 M and 26 F; mean age ± 23.64; age range 19–33 years). Individuals with ASD were age-, gender- and full scale IQ-matched with the individuals with typical development (see Table 1). Full scale IQ was measured via the Wechsler Adult Intelligence Scale – Fourth edition (WAIS-IV; Wechsler, 2008; Italian language adaptation: To delineate whether the ASD diagnosis modulates the expression of body ownership and whether sex differences in the NI are evident irrespective of the ASD diagnosis, we additionally tested a Control sample of typical individuals. Indeed, evidence has suggested that sex influences many aspects of typical development (Kimura, 1992; Baron-Cohen et al., 2005). In particular, men score higher in spatial abilities (e.g., mental rotation tasks, map reading tasks; Kimura, 1999), while women exhibit better-than-male performance in social sensitivity, emotional recognition and verbal fluency tasks. Thus, TABLE 1 | Sample description. Citation: In brief, stroking the fingers synchronously generates in the participants the sensation of owning the confederate’s finger as if it were his/her own finger. This illusion only emerges when the stroking occurs simultaneously. When the stimulation is asynchronous or performed by another person, the illusion is not perceived (or its illusory effects are reduced). Such illusory experience has been replicated in individuals with typical development (Dieguez et al., 2009; Martuzzi et al., 2015) and we have recently demonstrated its presence in adults with ASD The above-mentioned evidence is in line with the extreme male brain theory (EMB; Baron-Cohen, 2002), which posits that the underlying sex disparity in ASD might be the ‘hyper- masculinization’ of some behaviors. In other words, the ASD profile may represent an extreme form of the typical male profile, which is characterized by enhanced systemizing and reduced empathizing skills. Deficits in empathy, in understanding and February 2019 | Volume 10 | Article 168 2 Sex Differences in Body Ownership in ASD Guerra et al. (Guerra et al., 2017). However, whether body ownership illusory experiences are comparable among women and men with ASD is still unknown. considering the potential female advantage in the social domain and given that the development of adaptive social functioning requires an efficient sense of body ownership, we would expect a stronger disruption of the sense of body ownership during synchronous stroking in women with typical development compared to men. Here, we test whether women and men with ASD experience the NI in a similar way. Considering that women with ASD reportedly show less impairment in social information processing (e.g., Werling and Geschwind, 2013a), we foresee that the NI experience would be more efficient in women with ASD as compared to their male counterparts. In other words, we expect women with ASD to be more subjected to the NI, in virtue of a greater disruption of the sense of body ownership. If this were true, outcomes may point out for the first time to the existence of sex differences in the domain of sensory and illusory experiences in ASD and they may contribute to further support the characterization of the female phenotype of ASD. Participants The stroking was performed synchronously (i.e., the joint index fingers were stroked at the same time) or asynchronously (i.e., the joint index fingers were stroked alternatively) by the participant. In this posture, the participant stroked the dorsal side of the distal phalanges of the joined index fingers with the thumb and the index finger of the other hand, either in a synchronous or in an asynchronous way. Specifically, in synchronous conditions both the index finger and the thumb of the participant’s free hand started from the first phalanx and moved toward the third phalanx of the index finger of the receiver in a repetitive up- to-down movement. Instead, in asynchronous conditions the index finger of the agent started from the first phalanx, whereas the thumb started from the third phalanx of the index finger of the receiver and they moved in opposite directions stroking one finger at a time, alternatively. Before the beginning of the experimental phase, participants were trained to achieve a consistent stroking frequency and pressure. The frequency in stroking (i.e., 10 strokes in 10 s; 1 Hz) was constantly monitored by a co-experimenter by means of a timer to ensure that it was comparable across participants. The experimental design was a 2 × 2 factorial design. The factor Synchrony – how the joint index fingers were stroked – had two levels, namely synchronous (i.e., fingers stroked simultaneously) or asynchronous (i.e., fingers alternatively stroked). The factor Agent – who performed the stroking of the joint index fingers –had two levels, namely self (i.e., participant) and other (i.e., the experimenter). Given that the NI emerges only when the stimulation is self-administered and it primarily depends on the synchrony of the stimulation (i.e., Dieguez et al., 2009; Martuzzi et al., 2015; Guerra et al., 2017), the ‘Other’ condition has not been considered in this study (see Guerra et al., 2017 for an account on such condition in individuals with ASD). Indeed, the stroking performed by other people is not effective in inducing changes in the experience of the NI, irrespective of the type of synchrony of the stimulation. By removing this condition, we were able to gain power to evaluate the sex effects on the NI. This led to two experimental conditions, namely self-synchronous and self-asynchronous. Each condition was repeated four times in a pseudo-randomized order for a total of 8 trials. Each trial lasted 10 s. Data Analysis All statistical analyses were carried out with the R software (R package version 3.3.9; R Core Team, 2013) and, more specifically, by means of the lme function (nlme package version 3.1-131) to perform linear mixed effect models. For each participant, the mean of the responses across all conditions were computed to produce an individual index of the illusion experienced by the participant during the task (as in Dieguez et al., 2009 and Martuzzi et al., 2015). At first, the data from the ASD group were analyzed by means of fitting a linear mixed-effect model with Participants Participants with ASD received a formal diagnosis from an expert, licensed clinical psychologist based on the Diagnostic and Statistical Manual of Mental Disorder – 5 (DSM-5) and the clinical evaluation was supported by meeting criteria on at least the Autism Diagnosis Observation Schedule (ADOS; Lord et al., 2000) or the Autism Diagnostic Interview – Revised (ADI-R; Lord et al., 1994; see Table 1), either on both. Participants with typical development had no history of ASD and they did not have any first or second- degree relatives with a diagnosis of ASD. Participants with ASD were recruited via the local Pediatric and Developmental Neuropsychiatric Clinics, while volunteers were recruited on campus at the University of Padova (Italy). The project was approved by the local ethical committee and the experimental procedures were in accordance with the Declaration of Helsinki (Williams, 2008). All participants signed a written informed consent prior to the beginning of their experimental session. Participants At the end of each trial, participants rated the strength of the illusion experienced during the task by means of a questionnaire composed by 5 questions presented on 5-point Likert scale (Dieguez et al., 2009; Martuzzi et al., 2015; Table 2). The scale ranged from 1 (completely disagree) to 5 (completely agree). In line with previous studies (e.g., Dieguez et al., 2009; Martuzzi et al., 2015), we considered scores higher than 3 indicating that a significant illusory experience was reported. Questions were repeated in a pseudo-randomized order across all trials, to reduce contextual influences on responses. FIGURE 1 | Procedure to induce the NI: the participant pressed the palm of his/her right hand against the left palm of the experimenter. In this posture, the participant stroked with the index and thumb of his/her free hand the joined index fingers (participant + experimenter). The stroking was performed synchronously (i.e., the joint index fingers were stroked at the same time) or asynchronously (i.e., the joint index fingers were stroked alternatively) by the participant. Orsini and Pezzuti, 2013) or via the Wechsler Abbreviated Scale of Intelligence (WASI; Wechsler, 1999). Participants with ASD received a formal diagnosis from an expert, licensed clinical psychologist based on the Diagnostic and Statistical Manual of Mental Disorder – 5 (DSM-5) and the clinical evaluation was supported by meeting criteria on at least the Autism Diagnosis Observation Schedule (ADOS; Lord et al., 2000) or the Autism Diagnostic Interview – Revised (ADI-R; Lord et al., 1994; see Table 1), either on both. Participants with typical development had no history of ASD and they did not have any first or second- degree relatives with a diagnosis of ASD. Participants with ASD were recruited via the local Pediatric and Developmental Neuropsychiatric Clinics, while volunteers were recruited on campus at the University of Padova (Italy). The project was approved by the local ethical committee and the experimental procedures were in accordance with the Declaration of Helsinki (Williams, 2008). All participants signed a written informed consent prior to the beginning of their experimental session. Orsini and Pezzuti, 2013) or via the Wechsler Abbreviated Scale of Intelligence (WASI; Wechsler, 1999). Participants ASD Group Males Females test p-value N 74% (n = 29) 26% (n = 10) χ2(1) = 9.26 < 0.01∗ AGE 24.93 ( ± 3.33; range 19–31) 24.1 ( ± 3.60; range 19–30) t37 = −0.66 0.509 Full scale IQ 113.33 ( ± 11.15; range 89–129) 114.14 ( ± 12.29; range 98–128) t37 = 0.16 0.879 ADOS (total) 10.6 ( ± 5.41; range 3–23) 10.9 ( ± 4.61; range 6–22) t37 = 0.16 0.871 ADI-R (total) 39.79 ( ±14.33; range 20–67) 35.1 ( ± 5.67; range 27–44) t37 = −1.00 0.323 Control Group Males Females test p-value N 62% (n = 43) 38% (n = 26) χ2(1) = 4.19 < 0.05∗ AGE 24.14 ( ± 3.38; range 19–33) 22.73 ( ± 2.47; range 19–28) t67 = −1.78 0.079 Full scale IQ 107.25 ( ± 12.28; range 92–121) 112.67 ( ± 4.50; range 108–117) t67 = 0.72 0.487 ASD Group Control Group test p-value N F 9% (n = 10) 24% (n = 26) χ2(1) = 7.11 < 0.01∗ M 27% (n = 29) 40% (n = 43) χ2(1) = 2.72 0.099 total 36% (n = 39) 64% (n = 69) χ2(1) = 1.62 0.202 AGE F 24.1 ( ± 3.60) 22.73 ( ± 2.47) t34 = 1.25 0.220 M 24.93 ( ± 3.33) 24.14 ( ± 3.38) t70 = 0.98 0.330 total 24.72 ( ± 3.37) 23.64 ( ± 3.10) t106 = 1.68 0.095 Full scale IQ F 114.14 ( ± 12.29) 112.67 ( ± 4.50) t34 = 0.19 0.849 M 113.33 ( ± 11.15) 107.25 ( ± 12.28) t70 = 1.30 0.202 total 113.5 ( ± 11.21) 108.7 ( ± 10.77) t106 = 1.23 0.226 ASD, autism spectrum disorder; IQ, intelligence quotient; ADOS, autism diagnosis observation schedules; ADI–R, autism diagnostic interview-revised. Age, IQ, ADOS and ADI-R refer to the mean, while standard deviation and range are given in parentheses. F, females; M, males; ∗p < 0.05. Frontiers in Psychology | www.frontiersin.org February 2019 | Volume 10 | Article 168 3 Sex Differences in Body Ownership in ASD Guerra et al. FIGURE 1 | Procedure to induce the NI: the participant pressed the palm of his/her right hand against the left palm of the experimenter. In this posture, the participant stroked with the index and thumb of his/her free hand the joined index fingers (participant + experimenter). Procedure The procedures were the same as in Guerra et al., 2017. Each participant and the experimenter sat facing each other. At the beginning of each trial, the participant was asked to press the palm of his/her right hand against the experimenter’s left-hand palm, which was lifted in the air (Figure 1). February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 4 Sex Differences in Body Ownership in ASD Guerra et al. TABLE 2 | Numbness illusion self-report. During the stroking of the fingers. . . 1. The felt sensation was strange 2. I felt a sensation of numbness 3. It seemed like my own stroked finger became wider in size 4. It seemed like the experimenter’s finger became my own finger 5. It seemed like I felt only the big finger was being touched Completely disagree Disagree Neutral Agree Completely agree 1 2 3 4 5 p = 0.007). Furthermore, women with ASD reported a greater disruption of finger’s ownership when the stroking was asynchronous than men with ASD both in the asynchronous (t37 = 2.885; p = 0.031) and the synchronous conditions (t37 = 3.108; p = 0.018). No main effect of Synchrony emerged [F(1,37) = 0.97; p = 0.331; partial-η2 = 0.042; Figure 2]. Sex Affects the NI Experience in Individuals With ASD, but Not in the Control Group To test whether this sex difference is characteristic of the ASD experience of the NI or it is also experienced by individuals with typical development, we fitted a linear mixed- effect model including the variable Group as a between factor. Results indicated a significant effect of Sex [F(1,104) = 4.79; p = 0.031; partial-η2 = 0.050]. Pairwise comparisons showed that women experienced the illusion more than men of both groups (t104 = 2.34; p = 0.021). More specifically, results indicated that women with ASD perceived a stronger illusion compared to women (t104 = 3.75; p = 0.007) and men (t104 = 4.34; p < 0.001) in the Control group, when the stroking was asynchronous. Furthermore, when women with ASD performed the stroking synchronously, results showed that the illusion was differently compared to men (t104 = 3.54; p = 0.014) in the Control group in the asynchronous condition. The same pattern was also observed in the comparison between men in the ASD and the Control group with respect to the asynchronous conditions (t104 = 3.27; p = 0.031). However, differently from what we found in the ASD group (see paragraph above), no significant sex differences Synchrony (synchronous and asynchronous) as within factor, Sex (women and men) as between factors. Then, data from the two groups (ASD and Control) were analyzed by means of fitting a linear mixed-effect model with Synchrony (synchronous and asynchronous) as within factor, while Sex (women and men) and Group (ASD and Control) as between factors. When significant interactions were retrieved, we conducted pairwise comparisons. The significance level was set at p < 0.05. RESULTS Women With ASD Experience the NI More Strongly Than Men With ASD The analysis revealed that the NI was perceived differently by men and women with ASD [Sex: F(1,37) = 8.22; p = 0.007; partial-η2 = 0.182]. Indeed, the NI was perceived more clearly by women with ASD compared to men with ASD (t37 = 2.867; FIGURE 2 | Strength of the NI for women (F) and men (M) of ASD group. Error bars indicate the standard error of the mean (SEM). ∗= p < 0.05; The horizontal line with intercept 3 refers to the level at which the illusion was experienced by participants. FIGURE 2 | Strength of the NI for women (F) and men (M) of ASD group. Error bars indicate the standard error of the mean (SEM). ∗= p < 0.05; The horizontal line with intercept 3 refers to the level at which the illusion was experienced by participants. February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 5 Sex Differences in Body Ownership in ASD Guerra et al. were reported in the subjective experience of the illusion in the Control group [Group∗Sex: F(1,104) = 0.684; p = 0.410; partial-η2 = 0.007]. This suggests that women and men with typical development experience the NI in a similar manner (synchronous: t104 = 1.89; p = 0.555; asynchronous: t104 = 0.51; p = 0.999). These results were ascribable to the significant effect of Synchrony [F(1,104) = 30.91; p < 0.0001; partial-η2 = 0.104]. Indeed, the strength of the NI changed depending on the type of stroking (synchronous or asynchronous; Figure 3). This pattern holds true both for women (t104 = −5.85; p < 0.0001) and men (t104 = −5.01; p = 0.0001) with typical development and in the comparison between them (t104 = −4.67; p = 0.0002), but it is not evident in the ASD group (Figure 4). Indeed, the type of illusion perceived was different between the ASD and the Control group [Group: F(1,104) = 6.61; p = 0.012; partial-η2 = 0.075]. More specifically, the synchronous self-stroking produces the illusory effect of the NI in individuals of both the ASD and the Control groups. Such effect is not evident in Controls when the movement was performed asynchronously [Group∗Synchrony: F(1,104) = 26.77; p < 0.0001; partial-η2 = 0.204]. RESULTS Average scores to each item separately per group, per gender and per condition are reported in Table 3, while a frequency table with respect of participants’ self-report responses are given in Supplementary Table S1. influence of sex differences in sensory experiences in ASD has only been marginally addressed. This study aimed to explore whether the experience of sensory-induced body ownership – measured behaviorally by means of the NI - differs between women and men with ASD. Our findings showed a clear sex difference in the strength of the NI experienced by individuals with ASD. Despite both women and men with ASD reported to experience the disruption of the body ownership over their own finger in the synchronous and in the asynchronous conditions, women reported to experience the illusion significantly more strongly than men. To evaluate whether such sex difference in the experience of the NI is specific to ASD or it is a more general phenomenon, we also tested the effect of sex on the NI in a group of women and men with typical development. Comparing the performance of individuals with ASD with that of a group of matched controls, it emerges that women with ASD were more susceptible to the NI than women and men with typical development, especially when considering the asynchronous condition. This result acquires even more relevance when considering that no sex differences appeared when analyzing the Control group alone, showing that the NI manifests in a similar manner in both typically developing women and men. When focusing on the performance of men in both groups it is evident that both men in the ASD and Control groups were less susceptible to the NI compared to the women in both groups. DISCUSSION Two explanations, one focused on social skills and the other on sensory abilities, can be advanced to interpret these data. First, this finding may be interpreted as a reflection of the ability of women with ASD to better deal with socialization and empathy (e.g., Werling and Geschwind, 2013a). Indeed, the sense Researchers and clinicians are devoting more and more effort to understanding whether and how the differences between the female and male phenotypes of ASD can emerge. So far, the FIGURE 3 | Strength of the NI for women (F) and men (M) in the ASD and Control groups in the synchronous and asynchronous conditions. ∗= p < 0.05; Error bars refer to the standard error of the mean (SEM). The horizontal line with intercept 3 refers to the level of which the illusion was experienced by participants. FIGURE 3 | Strength of the NI for women (F) and men (M) in the ASD and Control groups in the synchronous and asynchronous conditions. ∗= p < 0.05; Error bars refer to the standard error of the mean (SEM). The horizontal line with intercept 3 refers to the level of which the illusion was experienced by participants. February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 6 Sex Differences in Body Ownership in ASD Guerra et al. FIGURE 4 | Strength of the NI for women (F) and men (M) in the Control group in the synchronous and asynchronous conditions. ∗= p < 0.05; ns = lack of statistical significance. Error bars refer to the standard error of the mean (SEM). The horizontal line with intercept 3 refers to the level of which the illusion was experienced by participants. FIGURE 4 | Strength of the NI for women (F) and men (M) in the Control group in the synchronous and asynchronous conditions. ∗= p < 0.05; ns = lack of statistical significance. Error bars refer to the standard error of the mean (SEM). The horizontal line with intercept 3 refers to the level of which the illusion was experienced by participants. et al., 2012) who exhibited reduced empathetic skills were also those who were less susceptible to the RHI. Although not tested directly, we may speculate that the women with ASD in the present sample may present better empathic skills than their male counterparts. DISCUSSION A second explanation, not in contrast with the previous one, may suggest that the increased susceptibility to the NI in women is the result of the ability of women to differentially focus on the sensory input received. Women seem to be more focused on the sensory information to solve the mismatch produced by the tactile conflict in the NI, whereas men rely less on such sensory information. This idea is in line with the evidence showing that girls with ASD score higher in the subscales of “Touch Response and Use” in the Tokyo version of the Childhood Autism Rating Scale (CARS) scale (Kumazaki et al., 2015) and that women with ASD report more sensory-motor symptoms than men with ASD (Moseley et al., 2018). Furthermore, increased sensory issues (e.g., noise hypersensitivity, unusual sensory interest, . . .) were reported more frequently in females with ASD than in males with ASD (Gould and Ashton-Smith, 2011; Lai et al., 2011). When directly comparing women with ASD and with typical development, self-reports suggest that they are both more sensitive to sensory stimulation than men (Tavassoli et al., 2014). This sensory perspective also fits with the evidence of a stronger NI’s experience in women in the synchronous (but not in the asynchronous) condition as compared to men. Indeed, results showed that the NI emerged in both groups when the stroking was synchronous, while, when the movement was performed asynchronously, of body ownership has been deemed crucial in the development of adaptive social skills, particularly imitation and empathy (Gallese, 2003). The literature exploring the link between body ownership and empathy reveals that both participants with ASD (Cascio et al., 2012) and typical development (Farmer TABLE 3 | Self-report’s scores. DISCUSSION ASD group Control group Males Females Males Females Synchronous Item 1 3.38 ± 0.57 3.63 ± 0.44 2.99 ± 0.97 3.34 ± 0.94 Item 2 3.08 ± 0.68 4.03 ± 0.36 2.60 ± 1.10 2.88 ± 0.99 Item 3 3.07 ± 0.79 3.60 ± 0.49 3.02 ± 1.06 3.14 ± 0.97 Item 4 3.26 ± 0.51 2.85 ± 1 3.38 ± 0.94 3.73 ± 0.77 Item 5 2.97 ± 0.62 3.20 ± 1.21 3.64 ± 0.88 3.97 ± 0.73 3.15 ± 0.38 3.46 ± 0.44 3.13 ± 0.70 3.41 ± 0.62 Asynchronous Item 1 3.36 ± 0.71 3.43 ± 0.59 2.66 ± 0.93 2.83 ± 0.85 Item 2 3.15 ± 0.63 3.90 ± 0.70 2.34 ± 0.96 2.60 ± 0.95 Item 3 3.10 ± 0.81 3.93 ± 0.58 2.71 ± 1.02 2.47 ± 0.82 Item 4 3.27 ± 0.69 3.33 ± 0.81 2.88 ± 0.77 2.99 ± 0.96 Item 5 3.04 ± 0.76 3.58 ± 1.03 2.95 ± 0.91 3.05 ± 0.93 3.18 ± 0.45 3.63 ± 0.42 2.71 ± 0.72 2.79 ± 0.65 Average scores for each questionnaire’s item across all condition of both ASD and Control groups. Values refer to the mean and standard deviation of participants’ ratings to the self-reports’ questions in both synchronous and asynchronous conditions, respectively. See Table 2 for the description of each item. Values in bold type refer to the mean and standard deviation of the strength of illusion experienced by participants in different conditions. February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 7 Sex Differences in Body Ownership in ASD Guerra et al. Furthermore, studies on unusual tactile sensitivity in autism reported no differences in the domain of tactile perception across different tactile stimuli (e.g., detection of light touch, discrimination of the roughness of different sandpapers,. . .) when high-functioning individuals with ASD were compared with individuals with typical development (O’Riordan and Passetti, 2006; Cascio et al., 2008). However, these findings reflect a non-social aspect of sensory suggestibility and may not be impaired in ASD. In lack of other evidence directly linking socially relevant sensory suggestibility to the tactile domain, we turn to the evidence gathered from eye-witnesses. In this case, individuals with ASD are reported to be “no more or less suggestible than their typical counterparts” when directly asked to report about their experiences (Maras and Bowler, 2014). DISCUSSION Second, if sensory suggestibility in the tactile domain is key to the perception of the NI, we should expect that the variability in sensory suggestibility would also be reflected at the level of the Control group. However, this is not the case, since a difference between the synchronous and asynchronous conditions is reported in the Control group, as expected when also looking at other illusory paradigms (Stone et al., 2018), but not in ASD. only the participants in the ASD group experienced the illusion. This seems to suggest that the process differentiating between self and other in individuals with ASD is impaired, in that an excessive focalization on one’s own self can alter the perception of the self-other boundary (Noel et al., 2017). An interesting observation, that was not part of our initial set of hypotheses, is related to the range of the responses given by the ASD group. Both women and men with ASD were highly reliable in providing the same rating of the strength of the NI. In other words, at the group level, the responses are locked around a limited range of options, as the inspection of the error bars suggests. This finding might be taken as evidence that the participants with ASD had difficulties in the understanding of the questions posed in the self-report. However, all participants with ASD presented a full-scale IQ comparable to that of controls, and this seems to be sufficient reason to believe that the instructions were understood and complied to the same extent as in the Control group. A more likely explanation for the reduced range of responses in the ASD sample can be found when interpreting this outcome in the context of the aberrant precision theory (Bolis et al., 2017). Such theory posits that individuals with ASD use abnormal strategies (i.e., perceptual hypersensitivity, hyper-attention to details,. . .) to make perceptual inferences. Such strategies, rather than maximizing the confidence in the sensory evidence estimated based on a priori beliefs (i.e., reducing the prediction error), tend to produce sub-optimal inferences about the nature of the sensory information. In other words, and compatibly with the neural instantiation of Bayesian inference from which this principle is extracted (e.g., Friston, 2005; Bastos et al., 2012), aberrant precision strategies emerge when the sensory bottom-up input and the top-down predictions about a stimulus are mismatching (i.e., the prediction error). DISCUSSION In the context of the NI, the expectation of the participant is to feel their own index finger pressed against the hand of the experimenter as part of their own body. However, the sensory inputs (visual and tactile) produce an experience compatible with the reduction of body ownership for such finger (self) and attributing the ownership of that finger to the experimenter (other). Put in these words, it appears evident how the precision ascribed to the sensory evidence retrieved is imbalanced with respect to the a priori belief hold about the experience. In line with the call from the ASD and the scientific community for research into the female autistic phenotype (Halladay et al., 2015; Lai et al., 2015), the present study contributes to uncover of sex differences in adults with ASD in the field of the perception of body ownership by means of the NI, a novel procedure to better understand sensory and social issues in individuals with ASD. As for most innovative studies, some limitations in data interpretation exist and future studies will be needed to address them. First, although proportional to what found in the ASD population, the sample of women with ASD included in the present study is rather limited. Therefore, to confirm the present set of results we call for the replication of this study in a larger sample of individuals with ASD. Second, to better characterize the female phenotype of ASD a developmental perspective is needed. Indeed, testing our hypotheses from childhood to adulthood will allow to understand more deeply how sex differences in body ownership emerge over development. Third, to confirm the specificity of these results to ASD, it would be important to investigate sex differences in the NI in a group of individuals with non-ASD atypical development. Fourth, the administration of standardized self- reports on sensory perception (e.g., the sensory perception quotient; Tavassoli et al., 2014) and empathy (e.g., empathy quotient; Baron-Cohen and Wheelwright, 2004) can be used to probe the link between empathizing skills and the sense of body ownership during the NI. Indeed, testing the possible relationships between sex differences in the NI experience and individual empathic competences in typical and atypical populations might contribute to better understanding the processing underlying the behavioral sex disparity in ASD. Frontiers in Psychology | www.frontiersin.org REFERENCES disorders? J. Am. Acad. Child Adolesc. Psychiatry 51, 788–797. doi: 10.1016/j. jaac.2012.05.018 disorders? J. Am. Acad. Child Adolesc. Psychiatry 51, 788–797. doi: 10.1016/j. jaac.2012.05.018 Asperger, H. (1944). The “autistic psychopathy” in childhood. Arch. Psychiatr. Nervenärzte. 117, 76–136. doi: 10.1007/BF01837709 Ehrsson, H. H. (2007). The experimental induction of out-of-body experiences. Science 317:1048. doi: 10.1126/science.1142175 Attwood, T. (2007). The Complete Guide to Asperger’s Syndrome. London: Jessica Kingsley Publishers. Farmer, H., Tajadura-Jiménez, A., and Tsakiris, M. (2012). Beyond the colour of my skin: how skin colour affects the sense of body-ownership. Conscious. Cogn. 21, 1242–1256 doi: 10 1016/j concog 2012 04 011 1242–1256. doi: 10.1016/j.concog.2012.04.011 Baron-Cohen, S. (2002). The extreme male brain theory of autism. TICS 6, 248–254. doi: 10.1016/S1364-6613(02)01904-6 Faul, F., Erdfelder, E., Buchner, A., and Lang, A.-G. (2009). Statistical power analyses using G∗Power 3.1: tests for correlation and regression analyses. Behav. Res. Method 41, 1149–1160. doi: 10.3758/BRM.41.4.1149 Baron-Cohen, S., Knickmeyer, R. C., and Belmonte, M. K. (2005). Sex differences in the brain: implication for explaining autism. Science 310, 819–823. doi: 10.1126/science.1115455 Res. Method 41, 1149–1160. doi: 10.3758/BRM.41.4.1149 Folegatti, A., Farne‘, A., Salemme, R., and de Vignemont, F. (2012). The rubber hand illusion: two’s a company, but three’s a crowd. Conscious. Cogn. 21, 799–812. doi: 10.1016/j.concog.2012.02.008 Baron-Cohen, S., Lesli, A. M., and Frith, U. (1985). Does the autistic child have a ‘theory of mind’? Cognition 21, 37–46. doi: 10.1016/0010-0277(85)90022-8 Friston, K. (2005). A theory of cortical responses. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360, 815–836. doi: 10.1098/rstb.2005.1622 Baron-Cohen, S., and Wheelwright, S. (2004). The empathy quotient: an investigation of adults with Asperger syndrome or high functioning autism, and normal sex differences. JADD 34, 163–175. doi: 10.1023/B:JADD.0000022607. 19833.00 Gallagher, S. (2000). Philosophical conceptions of the self: implication for cognitive science. TICS 4, 14–21. doi: 10.1016/S1364-6613(99)01417-5 science. TICS 4, 14–21. doi: 10.1016/S1364-6613(99)01417-5 Bastos, A. M., Usrey, W. M., Adams, R. A., Mangun, G. R., Fries, P., and Friston, K. J. (2012). Canonical microcircuits for predictive coding. Neuron 76, 695–711. doi: 10.1016/j.neuron.2012.10.038 Gallese, V. (2003). The roots of empathy: the shared manifold hypothesis and the neural basis of intersubjectivity. Psychopathology 36, 171–180. doi: 10.1159/ 000072786 Bolis, D., Balsters, J., Wenderoth, N., Becchio, C., and Schilbach, L. (2017). Beyond autism: introducing the dialectical misattunement hypothesis and a bayesian account of intersubjectivity. Psychopathology 50, 355–372. doi: 10. 1159/000484353 Gheorghiu, V. A., Koch, E., and Hubner, M. (1995). REFERENCES “A group scale for the influence of suggestion on sensory judgments,” in Hypnosis Connecting Disciplines. Proceedings of the Sixth European Congress of Hypnosis in Psychotherapy and Psychosomatic Medicine, Vienna, August 14–20, eds E. Blocs, G. Guttmann, M. Martin, M. Mende, H. Kanitschar, and H. Walter (Vienna: Medizinisch- Pharmazeutische Verlagsgesellschaftm), 14–17. Botvinick, M., and Cohen, J. (1998). Rubber hands “feel” touch that the eyes see. Nature 391:756. doi: 10.1038/35784 Gould, J., and Ashton-Smith, J. (2011). Missed diagnosis or misdiagnosis? Girls and women on the autism spectrum. Good Autism Pract. 12, 34–41. Carter, A. S., Black, D. O., Tewani, S., Connolly, C. E., Kadlec, M. B., and Tager- Flusberg, H. (2007). Sex differences in toddlers with autism spectrum disorders. JADD 37, 86–97. doi: 10.1007/s10803-006-0331-7 Guerra, S., Spoto, A., Parma, V., Straulino, E., and Castiello, U. (2017). In sync or not in sync? Illusory body ownership in autism spectrum disorder. Res. Autism Spectr. Disord. 41-42, 1–7. doi: 10.1016/j.rasd.2017.07.003 Cascio, C., Foss-Feig, J. H., Burnette, C. P., Heacock, J. L., and Cosby, A. A. (2012). The rubber hand illusion in children with autism spectrum disorders: delayed influence of combined tactile and visual input on proprioception. Autism 16, 406–419. doi: 10.1177/1362361311430404 Halladay, A. K., Bishop, S., Constantino, J. N., Daniels, A. M., Koenig, K., Palmer, K., et al. (2015). Sex and gender differences in autism spectrum disorder: summarizing evidence gaps and identifying emerging areas of priority. Mol. Autism 6:36. doi: 10.1186/s13229-015-0019-y Cascio, C., McGlone, F., Folger, S., Tannan, V., Baranek, G., Pelphrey, K. A., et al. (2008). Tactile perception in adults with autism: a multidimensional psychophysical study. J. Aut. Dev. Disord. 38, 127–137. doi: 10.1007/s10803- 007-03770-8 Head, A. M., McGillivray, J. A., and Stokes, M. A. (2014). Gender differences in emotionality and sociability in children with autism spectrum disorders. Mol. Autism 5, 1–9. doi: 10.1186/2040-2392-5-19 David, N., Newen, A., and Vogeley, K. (2008). The “sense of agency” and its underlying cognitive and neural mechanisms. Conscious. Cogn. 17, 523–534. doi: 10.1016/j.concog.2008.03.004 Hiller, R. M., Young, R. L., and Weber, N. (2014). Sex differences in autism spectrum disorder based on DSM-5 criteria: evidence from clinician and teacher reporting. J. Abnorm. Child Psychol. 42, 1381–1393. doi: 10.1007/s10802-014- 9881-x Dieguez, S., Mercier, M. R., Newby, N., and Blanke, O. (2009). Feeling numbness for someone else’s finger. Curr. Biol. 19, R1108–R1109. doi: 10.1016/j.cub.2009. 10.055 Hiller, R. M., Young, R. L., and Weber, N. (2016). AUTHOR CONTRIBUTIONS VP, UC, and SG conceived and designed the study. SG contributed to testing and data acquisition. AS, SG, and VP analyzed and interpreted the data. VP and SG drafted the manuscript. VP, UC, AS, and SG reviewed and edited the manuscript. All authors approved the final version of the manuscript for submission. VP, UC, and SG conceived and designed the study. SG contributed to testing and data acquisition. AS, SG, and VP analyzed and interpreted the data. VP and SG drafted the manuscript. VP, UC, AS, and SG reviewed and edited the manuscript. All authors approved the final version of the manuscript for submission. VP, UC, and SG conceived and designed the study. SG contributed to testing and data acquisition. AS, SG, and VP ACKNOWLEDGMENTS We are indebted to our participants for having given us their time and best effort to complete the tasks. We are indebted to our participants for having given us their time and best effort to complete the tasks. SUPPLEMENTARY MATERIAL The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpsyg. 2019.00168/full#supplementary-material FUNDING To summarize, this is the first study exploring how women and men with ASD are affected by a sensory-induced illusion on the sense of body ownership. These results, discussed in the context of social and sensory issues typical of women with ASD, pave the way for the investigation of how sensory experiences can help define the female phenotype of ASD. This work was supported by the Strategic Project (No. 2010XPMFW4) to UC. DISCUSSION Fifth, to further test whether the results hereby presented are confounded by sensory suggestibility, we suggest the inclusion of the sensory suggestibility scale (Gheorghiu et al., 1995) in future investigations. p Despite the attention to details, including sensory ones in ASD (Martínez-Sanchis, 2014), one might also consider the lack of a significant difference between the synchronous and asynchronous conditions in ASD as the reflection of the lack in the perception of the NI and, instead, the evidence of greater sensory suggestibility in ASD. Although our data are not directly able to test this issue, we contend that this may be unlikely for at least two reasons. First, sensory suggestibility does not seem to be impaired in ASD. Specifically, when looking at sensory suggestibility in the RHI, it has been reported that the temperature of the hand subjected to the RHI similarly does not drop in participants with ASD and controls, calling for similar levels of sensory suggestibility across groups. February 2019 | Volume 10 | Article 168 8 Sex Differences in Body Ownership in ASD Guerra et al. REFERENCES Sex differences in pre-diagnosis concerns for children later diagnosed with autism spectrum disorder. Autism 20, 75–84. doi: 10.1177/1362361314568899 Dworzynski, K., Ronald, A., Bolton, P., and Happe, F. (2012). How different are girls and boys above and below the diagnostic threshold for autism spectrum February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 9 Sex Differences in Body Ownership in ASD Guerra et al. Kanner, L. (1943). Autistic disturbances of affective contact. Nerv. Child. 2, 217–250. Rivet, T. T., and Matson, J. L. (2011). Review of gender differences in core symptomatology in autism spectrum disorders. Res. Autism Spectr. Disord. 5, 957–976. doi: 10.1016/j.rasd.2010.12.003 Kimura, D. (1992). Sex differences in the brain. Sci. Am. 267, 118–125. doi: 10.1038/ scientificamerican0992-118 Robinson, E. B., Lichtenstein, P., Anckarsäter, H., Happé, F., and Ronald, A. (2013). Examining and interpreting the female protective effect against autistic behavior. PNAS 110, 5258–5262. doi: 10.1073/pnas.1211070110 Kimura, D. (1999). Sex and Cognition. London: MIT Press. doi: 10.7551/mitpress/ 6194.001.0001 Skuse, D. H. (2007). Rethinking the nature of genetic vulnerability to autistic spectrum disorders. Trends Genet. 23, 387–395. doi: 10.1016/j.tig.2007.06.003 Kumazaki, H., Muramatsu, T., Kosaka, H., Fujisawa, T. X., Iwata, K., Tomoda, A., et al. (2015). Sex differences in cognitive and symptom profiles in children with high functioning autism spectrum disorders. Res. Autism Spectr. Disord. 13-14, 1–7. doi: 10.1016/j.rasd.2014.12.011 Slater, M., Perez-Marcos, D., Ehrsson, H. H., and Sanchez-Vives, M. V. (2008). Towards a digital body: the virtual arm illusion. Front. Hum. Neurosci. 2:6. doi: 10.3389/neuro.09.006.2008 Lai, M.-C., Lombardo, M., Auyeung, B., Chakrabarti, B., and Baron-Cohen, S. (2015). Sex/gender differences and autism: setting the scene for future research. J. Am. Acad. Child Adolesc. Psychiatry 54, 11–24. doi: 10.1016/j.jaac.2014.10.003 Stone, K. D., Bullock, F., Keizer, A., and Dijkerman, H. C. (2018). The disappearing limb trick and the role of sensory suggestibility in illusion experience. Neuropsychologia 117, 418–427. doi: 10.1016/j.neuropsychologia.2018.07.012 Lai, M. C., Lombardo, M. V., Pasco, G., Ruigrok, A. N., Wheelwright, S. J., Sadek, S. A., et al. (2011). A behavioral comparison of male and female adults with high functioning autism spectrum conditions. PLoS One 6:e20835. doi: 10.1371/ journal.pone.0020835 Tavassoli, T., Hoekstra, R. A., and Baron-Cohen, S. (2014). The sensory perception quotient (SPQ): development and validation of a new sensory questionnaire for adults with and without autism. Mol. Autism 5:29. doi: 10.1186/2040-2392-5-29 Lord, C., Risi, S., Lambrecht, L. Jr., Cook, E. H., Leventhal, B. L., DiLavore, P. C., et al. (2000). REFERENCES The autism diagnostic observation schedule – generic: a standard measure of social and communication deficits associated with the spectrum of autism. JADD 30, 205–223. doi: 10.1023/A:100559240 1947 Van den Bos, E., and Jeannerod, M. (2002). Sense of body and sense of action both contribute to self-recognition. Cognition 85, 177–187. doi: 10.1016/S0010- 0277(02)00100-2 Van Wijngaarden-Cremers, P. J. M., van Eeten, E., Groen, W. B., Van Deurzen, P. A., Oosterling, I. J., and Van der Gaag, R. J. (2014). Gender and age differences in the core triad of impairments in autism spectrum disorders: a systematic review and meta-analysis. JADD 44, 627–635. doi: 10.1007/s10803-013-1913-9 Lord, C., Rutter, M., and Le Couteur, A. (1994). Autism diagnostic interview – revised: a revised version of a diagnostic interview for caregivers of individuals with possible pervasive developmental disorders. JADD 24, 659–685. doi: 10. 1007/BF02172145 Wechsler, D. (1999). WASI: Wechsler Abbreviated Scale of Intelligence. San Antonio, TX: Psychological Corporation. Maras, K. L., and Bowler, D. M. (2014). Eyewitness testimony in autism spectrum disorder: a review. J. Aut. Dev. Disord. 44, 2682–2697. doi: 10.1007/s10803-012- 1502-3 Wechsler, D. (2008). Wechsler Adult Intelligence Scale – Fourth Edition. San Antonio, TX: Pearson. Werling, D. M., and Geschwind, D. H. (2013a). Sex differences in autism spectrum disorders. Curr. Opin. Neurol. 26, 146–153. doi: 10.1097/WCO. 0b013e32835ee548 Martínez-Sanchis, S. (2014). Neurobiological foundations of multisensory integration in people with autism spectrum disorders: the role of the medial prefrontal cortex. Front. Hum. Neurosci. 8:970. doi: 10.3389/fnhum.2014. 00970 Werling, D. M., and Geschwind, D. H. (2013b). Understanding sex bias in autism spectrum disorder. PNAS 110, 4868–4869. doi: 10.1073/pnas.1301602110 Martuzzi, R., van der Zwaag, W., Dieguez, S., Serino, A., Gruetter, R., and Blanke, O. (2015). Distinct contributions of Brodmann areas 1 and 2 to body ownership. Soc. Cogn. Affect. Neurosci. 10, 1449–1459. doi: 10.1093/scan/nsv031 Williams, J. R. (2008). The Declaration of Helsinki and public health. Bull. World Health Organ. 86, 650–652. doi: 10.2471/BLT.08.050955 Wing, L. (1981). Sex ratios in early childhood autism and related conditions. Psychiatr. Res. 5, 129–137. doi: 10.1016/0165-1781(81)90043-3 Moseley, R. L., Hitchiner, R., and Kirkby, J. A. (2018). Self-reported sex differences in high-functioning adults with autism: a meta-analysis. Mol. Autism 9:33. doi: 10.1186/s13229-018-0216-6 Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Noel, J. P., Cascio, C. J., Wallace, M. T., and Park, S. REFERENCES (2017). The spatial self in schizophrenia and autism spectrum disorder. Schizophr. Res. 179, 8–12. doi: 10.1016/j.schres.2016.09.021 Copyright © 2019 Guerra, Spoto, Castiello and Parma. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. O’Riordan, M., and Passetti, F. (2006). Discrimination in autism within different sensory modalities. J. Aut. Dev. Disord. 36, 665–675. doi: 10.1007/s10803-006- 0106-1 Orsini, A., and Pezzuti, L. (2013). WAIS-IV. Contributo Alla Taratura Italiana (16-69 anni). Firenze: Giunti OS. R Core Team (2013). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing. February 2019 | Volume 10 | Article 168 Frontiers in Psychology | www.frontiersin.org 10
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Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism
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UvA-DARE (Digital Academic Repository) Citation for published version (APA): Reis, C., Sharott, A., Magill, P. J., van Wijk, B. C. M., Parr, T., Zeidman, P., Friston, K. J., & Cagnan, H. (2019). Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism. NeuroImage, 193, 103-114. https://doi.org/10.1016/j.neuroimage.2019.03.009 Citation for published version (APA): Reis, C., Sharott, A., Magill, P. J., van Wijk, B. C. M., Parr, T., Zeidman, P., Friston, K. J., & Cagnan, H. (2019). Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism. NeuroImage, 193, 103-114. https://doi.org/10.1016/j.neuroimage.2019.03.009 Citation for published version (APA): Reis, C., Sharott, A., Magill, P. J., van Wijk, B. C. M., Parr, T., Zeidman, P., Friston, K. J., & Cagnan, H. (2019). Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism. 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You will be contacted as soon as possible. Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism Carolina Reis a,b, Andrew Sharott a, Peter J. Magill a,e, Bernadette C.M. van Wijk c,d, Thomas Parr c, Peter Zeidman c, Karl J. Friston c , Hayriye Cagnan a,b,* a Medical Research Council Brain Network Dynamics Unit, University of Oxford, Oxford, UK b Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford, Oxford, UK c Wellcome Centre for Human Neuroimaging, University College London, UK d Integrative Model-based Cognitive Neuroscience Research Unit, Department of Psychology, University of Amsterdam, the Nethe e Oxford Parkinson's Disease Centre, University of Oxford, Oxford, UK a Medical Research Council Brain Network Dynamics Unit, University of Oxford, Oxford, UK b Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford, Oxford, UK c Wellcome Centre for Human Neuroimaging, University College London, UK d Integrative Model-based Cognitive Neuroscience Research Unit, Department of Psychology, University of Amsterdam, the Netherlands e Oxford Parkinson's Disease Centre, University of Oxford, Oxford, UK A R T I C L E I N F O Keywords: Parkinson's disease Dynamic causal modelling Beta oscillations Thalamocortical interactions Effective connectivity Parkinson's disease (PD) is a neurodegenerative condition in which aberrant oscillatory synchronization of neuronal activity at beta frequencies (15–35 Hz) across the cortico-basal ganglia-thalamocortical circuit is asso- ciated with debilitating motor symptoms, such as bradykinesia and rigidity. Mounting evidence suggests that the magnitude of beta synchrony in the parkinsonian state fluctuates over time, but the mechanisms by which tha- lamocortical circuitry regulates the dynamic properties of cortical beta in PD are poorly understood. Using the recently developed generic Dynamic Causal Modelling (DCM) framework, we recursively optimized a set of plausible models of the thalamocortical circuit (n ¼ 144) to infer the neural mechanisms that best explain the transitions between low and high beta power states observed in recordings of field potentials made in the motor cortex of anesthetized Parkinsonian rats. Bayesian model comparison suggests that upregulation of cortical rhythmic activity in the beta-frequency band results from changes in the coupling strength both between and within the thalamus and motor cortex. Specifically, our model indicates that high levels of cortical beta synchrony are mainly achieved by a delayed (extrinsic) input from thalamic relay cells to deep pyramidal cells and a fast (intrinsic) input from middle pyramidal cells to superficial pyramidal cells. From a clinical perspective, our study provides insights into potential therapeutic strategies that could be utilized to modulate the network mechanisms responsible for the enhancement of cortical beta in PD. Specifically, we speculate that cortical stimulation aimed to reduce the enhanced excitatory inputs to either the superficial or deep pyramidal cells could be a potential non- invasive therapeutic strategy for PD. Parkinson's disease (PD) patients (Brown et al., 2001) and experimental animal models of the disease (Bergman et al., 1994; Sharott et al., 2005). However, it remains unknown why dopamine depletion leads to exces- sive synchronization across the CBGTC circuit during PD (Jenkinson and Brown, 2011; Hammond et al., 2007, Leblois, 2006). The onset of measurable oscillations in experimental Parkinsonism takes several days post dopaminergic cell loss (Mallet et al., 2008a). One potential expla- nation for this observation is that the reduction in dopaminergic drive may lead to plastic changes and give rise to abnormal synchronization in neural activity within and between different nodes of the CBGTC circuit. Regardless of the exact mechanism, a positive correlation between excessive beta activity and motor deficits has been reported by several * Corresponding author. MRC Brain Network Dynamics Unit, University of Oxford, Oxford, UK. E-mail address: hayriye.cagnan@ndcn.ox.ac.uk (H. Cagnan). Contents lists available at ScienceDirect Contents lists available at ScienceDirect Disclaimer/Complaints regulations f UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) will be contacted as soon as possible. Download date:24 Oct 2024 NeuroImage 193 (2019) 103–114 g y y E-mail address: hayriye.cagnan@ndcn.ox.ac.uk (H. Cagnan). https://doi.org/10.1016/j.neuroimage.2019.03.009 Received 20 September 2018; Received in revised form 1 February 2019; Accepted 5 March 2019 Available online 9 March 2019 1053-8119/© 2019 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). 2.2. Data processing All operations described in this section were performed in Matlab 2017a/2018a. Data and code that support the findings of this study are available from the corresponding author (HC; hayriye.cagnan@ndcn .ox.ac.uk) upon request. Recordings were down-sampled to 1000 Hz from 16,000 Hz. To characterize the spontaneous beta power fluctuations typically observed in PD, we defined two conditions based on instanta- neous beta power – condition one being Low Beta (LB) power and con- dition two being High Beta (HB) power. These conditions were based on fluctuations in beta power that enabled us to select data-features (i.e., timeseries) for subsequent dynamic causal modelling that were repre- sentative of the two conditions. Some experimental studies, on the other hand, support the role of cerebral cortex in the generation and modulation of beta oscillations (Jensen et al., 2005; Yamawaki et al., 2008). This perspective has motivated the consideration of cortical interlaminar interactions in the regulation of beta power. In the healthy state, the generation and mod- ulation of beta oscillations has been investigated using DCM (Bhatt et al., 2016), revealing a link between a set of laminar specific interactions within the primary motor cortex and the enhancement/suppression of beta power evoked by movement. Using a theoretical model, Sherman et al. (2016) suggested that high beta power events in the physiological state emerge through cortical laminar interactions conditioned by tem- poral characteristics of the distal and proximal synaptic drives in the neocortex. To extract the beta power envelope, we applied a second order band- pass Butterworth filter with cut-off frequencies at 15–35 Hz to the ECoG recording and subsequently employed the Hilbert transform to compute the envelope of the ECoG in the beta frequency band. Each envelope was then divided into non-overlapping epochs of 500 msec The two condi- tions were subsequently derived from a relative threshold applied to the area under the envelope across the 500msec epochs: (1) LB epochs consisted of segments whose envelope area fell below the 5th percentile of the envelope area observed across all epochs, and (2) HB epochs consisted of segments whose envelope area was above the 95th percen- tile of the envelope area observed across all epochs (Fig. 1). 5th and 95th percentile thresholds were determined per dataset. From each recording, we randomly selected 5 epochs per condition (n ¼ 5). 2.1. Electrophysiological recordings in parkinsonian rats The spectral data used in this study was based on motor cortex field potentials (electrocorticograms) recorded in 36 urethane-anesthetized rats rendered Parkinsonian by unilateral 6-OHDA lesions of midbrain dopaminergic neurons. To record electrocorticogram (ECoG) data, a steel screw electrode was implanted over the right somatosensory-motor cortex ipsilateral to the 6-OHDA lesion and referenced to a steel screw electrode implanted over the ipsilateral cerebellar hemisphere. Electro- physiological recordings were carried out 21–42 days after surgery for the induction of 6-OHDA lesions, thus allowing for changes in the CBGTC circuit to stabilize. For detailed descriptions of electrode implantation, anaesthesia, surgical induction of 6-OHDA lesions and related proced- ures, please refer to (Mallet et al., 2008a, 2008b; Sharott et al., 2017). Only ECoG recordings made during periods of spontaneous ‘cortical activation’ were considered in this study (Mallet et al., 2008a, 2008b; Sharott et al., 2017). All experimental procedures were carried out on adult male Sprague-Dawley rats (Charles River, Margate, UK) and were conducted in accordance with the Animals (Scientific Procedures) Act, 1986 (UK). Adaptive Deep Brain Stimulation (aDBS) is an intervention that has been developed to account for the transient nature of pathological neural synchrony in the beta band. In contrast to conventional DBS (cDBS), which continuously delivers high-frequency stimulation, aDBS adapts stimulation delivery according to the level of beta power (Little et al., 2013, 2012; Rosa et al., 2015), showing greater clinical efficiency (higher motor symptom relief and fewer secondary effects) than cDBS and random stimulation (Little et al., 2013). From a neuronal network perspective, several studies have proposed that altered basal-ganglia output leads to excessive beta synchrony and motor impairments in PD (Bevan et al., 2002; Holgado et al., 2010; McCarthy et al., 2011; Terman et al., 2002). Employing Dynamic Causal Modelling (DCM) (Friston et al., 2003), a framework for specifying, fitting and comparing mathematical models of neural circuitry, Moran et al. (2011) and Marreiros et al. (2013) indicated modulation of the hyperdirect pathway and the projection from the subthalamic nucleus and globus pallidus externus as potential mechanisms for beta power enhancement in dopamine-depleted states. 2. Methods Although excessive synchrony in the beta band (i.e. beta power) is traditionally described as a sustained event when averaged over seconds (Brittain and Brown, 2014; Brown, 2007; Lopez-Azcarate et al., 2010), it primarily manifests as intermittent events of high beta power or “beta bursts” (Feingold et al., 2015; Sherman et al., 2016; Tinkhauser et al., 2017; Little et al., 2012; Leventhal et al., 2012). Beta bursts have been defined operationally as epochs of beta oscillations that surpass a certain threshold – and their presence has been quantified in physiological (Sherman et al., 2016; Feingold et al., 2015) and pathological neural activity (Tinkhauser et al., 2017; Little et al., 2012). More specifically, in Parkinson's disease, the probability of long beta bursts has been posi- tively correlated with PD motor symptom severity (Tinkhauser et al., 2017; Little et al., 2012). 1. Introduction Neuronal oscillations are considered to be key elements of informa- tion flow (Buzsaki and Draguhn, 2004; Salinas and Sejnowski, 2001). For neural populations to communicate in a behaviour-specific and adaptive fashion, they may adapt their degree of rhythmic synchronization accordingly (Fries, 2005). In its normative physiological state, the Cortico-Basal Ganglia-Thalamo-Cortical circuit (CBGTC) exhibits tran- sient (de-)synchronization in the beta band (13–30 Hz) activity during motor control (Cassidy et al., 2002; Foffani et al., 2005; Pfurtscheller and Lopes da Silva, 1999; Tsang et al., 2012; Zaepffel et al., 2013). Increased oscillations in the beta band have been observed both in C. Reis et al. NeuroImage 193 (2019) 103–114 clinical studies (Eusebio et al., 2009; Kuhn et al., 2008). clinical studies (Eusebio et al., 2009; Kuhn et al., 2008). thalamus establish a reciprocal relationship (Hooks et al., 2013), which is thought to play a key role in physiological and pathological sensory and motor computations (Sherman & Guillery, 2001). In PD, where motor impairments are the cardinal symptoms, understanding the synaptic dynamics and organization of the thalamocortical (TC) circuit could potentially shed light on pathophysiological mechanisms. Accordingly, we used cross spectral density (CSD) - DCM (Moran et al., 2009, 2011) with a neural mass model of the TC loop (van Wijk et al., 2018) to characterize its contribution to spontaneous beta power fluctuations observed in the motor cortex of 6-OHDA-lesioned Parkinsonian rats. When Parkinsonian motor deficits are attenuated with pharmaco- logical (Levodopa) or neuromodulatory interventions (deep brain stim- ulation or optogenetics), a reduction in synchronization is observed in the beta-frequency band across different species, including humans (Brown et al., 2001; Eusebio et al., 2009; Kuhn et al., 2008; Levy et al., 2002; Priori et al., 2004; Silberstein et al., 2005), 1-methyl-4-phenyl-1,2, 3,6-tetrahydropyridine treated non-human primate models of PD (Heimer et al., 2006; Nambu and Tachibana, 2014) and a 6-hydroxydop- amine (6-OHDA)-lesioned rat model of PD (Gradinaru et al., 2009; Sharott et al., 2005). 2.2. Data processing This number cor- responds to the minimum number of epochs found in either of the two conditions across all recordings. A detailed comparison between the above threshold and more conventional ones can be found in the Sup- plementary material (Fig. S1). Motivated by these studies, we hypothesized that – in the Parkinso- nian state – an alteration of interlaminar and laminar-specific connec- tivity in the Thalamocortical (TC) loop contributes to the mechanisms generating the parkinsonian spectral profile. We focused on the TC loop due to the anatomical and functional characteristics of this network: 1) the cortex is an optimal target for non-invasive therapeutic techniques such as TMS and TACS (Barker et al., 1985; Cantello, 2002; Kobayashi and Pascual-Leone, 2003; Herrmann et al., 2013); 2) the thalamus is the only CBGTC node projecting directly to cortex, allowing for the inte- gration of information from subcortical structures to the motor cortex (Wise and Donoghue, 1986; Brazhnik et al., 2016) and 3) cortex and 104 NeuroImage 193 (2019) 103–114 C. Reis et al. Fig. 1. Extraction of low beta and high beta power features isolated from ECoG data. Panel A. shows the segmentation of the envelope into 500 msec epochs (5 s as an example). Panel B. depicts the area under the beta band envelope for each epoch. If an epoch had an area under the curve below the 5th percentile of the area under the envelope observed across all epochs (blue line), it was classified as low beta (*1); if an epoch had an area under the curve above the 95th percentile of the area observed under the envelope across all epochs (red line), it was classified as high beta (*2). 5th and 95th percentile thresholds were determined per dataset. Epochs in between the two percentiles were not considered. Panel C. shows the corresponding low beta (dark blue) and high beta (red) epochs in the ECoG signal filtered at 15–35 Hz. Fig. 1. Extraction of low beta and high beta power features isolated from ECoG data. Panel A. shows the segmentation of the envelope into 500 msec epochs (5 s as an example). Panel B. depicts the area under the beta band envelope for each epoch. 2.2. Data processing If an epoch had an area under the curve below the 5th percentile of the area under the envelope observed across all epochs (blue line), it was classified as low beta (*1); if an epoch had an area under the curve above the 95th percentile of the area observed under the envelope across all epochs (red line), it was classified as high beta (*2). 5th and 95th percentile thresholds were determined per dataset. Epochs in between the two percentiles were not considered. Panel C. shows the corresponding low beta (dark blue) and high beta (red) epochs in the ECoG signal filtered at 15–35 Hz. 2.3.1. Neural mass model of the thalamocortical circuit A neural mass model of the Thalamocortical circuit was created comprising two formally distinct neural mass models of the motor cortex and the thalamus using the new generic framework for Dynamic Causal Modelling (van Wijk et al., 2018) (Fig. 2). Here, we adopted the motor cortex microcircuit (MMC) model developed by Bhatt et al. (2016) and coupled it to a model of the thalamus, based on thalamic anatomical literature (Shepherd and Grillner, 2010; Douglas and Martin, 2004). As The neural mass model (f) – together with a likelihood model map- ping hidden states to observed measurements – constitutes a generative model; namely, a probabilistic mapping between neural fluctuations and the spectral content of observed activity. Using a Bayesian framework, DCM estimates the (posterior) probability density over the synaptic pa- rameters, which are the most likely value of the hidden parameters, given Fig. 2. Sources, subpopulations and synaptic projections of a thalamocortical loop neural mass model. The top part of the diagram describes the first source - motor cortex and its subpopulations: superficial pyramidal cells (SP) in the supra- granular layer, middle pyramidal cells (MP) in the granular layer, deep pyramidal cells (DP) in the infragranular layer and, inhibitory interneurons (II) as a common inhibitory subpopulation to the 3 cortical laminae. Intrinsic synaptic connections among the above subpopulations comprise a reciprocal connection between superficial and middle pyramidal cells, a reciprocal connection between superficial and deep pyramidal cells, a reciprocal connection between each of the three pyramidal subpopulations and the inhibitory subpopulation and finally, a self-inhibitory connection to each cortical node. The bottom part of the diagram depicts the thalamus and its subpopulations: reticular thalamic cells (RET) as the inhibitory subpopulation of the thalamus and relay cells (REL) as the excitatory subpopulation of the motor thalamus. Intrinsic synaptic connec- tivity of the thalamus comprises a reciprocal connection between relay and reticular cells and self-inhibitory connection of reticular cells. As corticothalamic extrinsic connections, deep pyra- midal cells were considered to send afferents to both relay and reticular subpopulations, while the model space for thalamocortical projections is described in section 2.3.4 and illustrated in Fig. 3 (top panel). Fig. 2. Sources, subpopulations and synaptic projections of a thalamocortical loop neural mass model. 2.3. Dynamic causal modelling (DCM) the observed data (Moran et al., 2011). The generative (neural mass) model calls on its biophysical parameters to describe the evolution of voltages (v) and currents ðiÞ in each subpopulation of neurons (Jansen and Rit, 1995). In addition to estimating the posterior density over model parameters (e.g., synaptic connection strengths and the amplitude of neuronal fluctuations), DCM also provides an estimate of the evidence for a particular model or network architecture implicit in the generative model. This allows one to compare different models or hypotheses using Bayesian model comparison. A complete description of the mathematical framework that underwrites DCM can be found in (Moran et al., 2013). DCM for cross spectral density is used to infer the hidden (neuronal) states (z) and synaptic parameters (θ) that generate spectral features of observed data (u) (Moran et al., 2009, 2011). Hidden states and unknown parameters cannot be observed directly but can be estimated under a generative or forward model. This model comprises a biophysical neural mass model and the spectral composition of neural and channel noise (Moran et al., 2008). The neural mass model is expressed in terms of a differential equation with the following form: (1) _z ¼ fðz; u; θÞ 2.3.1. Neural mass model of the thalamocortical circuit The top part of the diagram describes the first source - motor cortex and its subpopulations: superficial pyramidal cells (SP) in the supra- granular layer, middle pyramidal cells (MP) in the granular layer, deep pyramidal cells (DP) in the infragranular layer and, inhibitory interneurons (II) as a common inhibitory subpopulation to the 3 cortical laminae. Intrinsic synaptic connections among the above subpopulations comprise a reciprocal connection between superficial and middle pyramidal cells, a reciprocal connection between superficial and deep pyramidal cells, a reciprocal connection between each of the three pyramidal subpopulations and the inhibitory subpopulation and finally, a self-inhibitory connection to each cortical node. The bottom part of the diagram depicts the thalamus and its subpopulations: reticular thalamic cells (RET) as the inhibitory subpopulation of the thalamus and relay cells (REL) as the excitatory subpopulation of the motor thalamus. Intrinsic synaptic connec- tivity of the thalamus comprises a reciprocal connection between relay and reticular cells and self-inhibitory connection of reticular cells. As corticothalamic extrinsic connections, deep pyra- midal cells were considered to send afferents to both relay and reticular subpopulations, while the model space for thalamocortical projections is described in section 2.3.4 and illustrated in Fig. 3 (top panel). 105 C. Reis et al. NeuroImage 193 (2019) 103–114 Table 1 Prior expectations set for the parameters of the baseline condition (Low beta). CT-corticothalamic projections; TC-thalamocortical projections; MMC – motor microcircuit; THAL-thalamus; SP- superficial pyramidal cells; MP- middle pyra- midal cells; DP – deep pyramidal cells. Table 1 This output is additionally scaled by the synaptic coupling strength as illus- trated by the following generic second order differential equation: €v a j ¼ γa kS  va k  þ λb mS  vb m  þ I  2 _va j  va j Ta j !, Ta j (2) (2) Here, the averaged membrane potential v of the subpopulation j in the source a is influenced by subpopulations of the same source with synaptic strength γ and subpopulations from different sources with synaptic strength λ. Intrinsic synapses γ show a positive synaptic strength if glu- tamatergic and negative synaptic strength if GABAergic. S denotes the sigmoid function above and T the subpopulation-specific membrane time constant. Endogenous fluctuations or input, I is modelled as a mixture of white and pink noise and drives middle pyramidal cells and thalamic relay cells. The rationale for modelling afferent input to both the motor cortex and thalamus (as opposed to restricting the model to thalamic input) rests on the fact that both motor cortex and thalamus receives input from other (unmodelled) components of the motor system. Exam- ples here include inputs from supplementary motor areas and premotor cortex to primary motor cortex (Jones et al., 1975) and inputs from basal ganglia and cerebellum to motor thalamus (Kuramoto et al., 2011; Nakamura et al., 2014). Table 1 Prior expectations set for the parameters of the baseline condition (Low beta). CT-corticothalamic projections; TC-thalamocortical projections; MMC – motor microcircuit; THAL-thalamus; SP- superficial pyramidal cells; MP- middle pyra- midal cells; DP – deep pyramidal cells. In this study, the thalamus was modelled using an excitatory sub- population (neuronal group of thalamic relay cells) and an inhibitory subpopulation (neuronal group of thalamic reticular cells) (Shepherd and Grillner, 2010) that were connected as follows: a reciprocal connection between relay and reticular cells (Harris, 1987; Cox et al., 1997) and a self-inhibitory connection of reticular cells (Shu and McCormick, 2002). Although we acknowledge that there are distinct thalamic nuclei (i.e. neuronal ensembles receiving afferents from different brain regions (Sherman & Guillery, 2001) the thalamus was modelled here as a single neuronal mass model. An important extension of the current work would be to subdivide the motor thalamus (ventral anterior, ventral lateral and ventral medial nuclei in rodents) into input zones that receive GABAergic drive from the Basal-Ganglia and glutamatergic drive from the cere- bellum (Kuramoto et al., 2011; Nakamura et al., 2014). To model the extrinsic synaptic interactions between the motor cortex and thalamus we used two corticothalamic projections from deep pyra- midal cells to thalamic relay cells and thalamic reticular cells (Bourassa et al., 1995; Jones, 2001). Although the thalamus is thought to project to all layers of the cortex (Hooks et al., 2013) and the ventromedial nucleus (VM) of the motor thalamus has been shown via immunochemistry studies to project mainly to layers I and II of the motor and anterior cingulate cortices (Arbuthnott et al., 1990; Clasca et al., 2012; Kuramoto et al., 2015), it is not clear which thalamocortical projections are important in modulating beta power. To resolve this, we considered different models to test the impact of including different connections on model evidence (section 2.3.4.). Operationally, the difference between within-structure (intrinsic) connections and between-structures connec- tions (extrinsic), relies on their propagation delay parameters (Table.1). Aiming to bring bio-plausibility to the TC neural mass model architec- ture, here the propagation delays of extrinsic connections (thalamo- cortical and corticothalamic projections) were set to 8msec while the propagation delays of intrinsic dynamics (intracortical and intrathalamic connections) were set to 1 msec subpopulation. Furthermore, the shape of the sigmoid function (slope) measures the efficacy of a presynaptic ensemble to generate output. 2.3.1. Neural mass model of the thalamocortical circuit Parameters Description Prior means (μ) Log-scaling parameters (π;σ2) γmmc 1…14 Synaptic coupling strengths motor cortex [Hz] [800 800 800 800 800 400 800 800 400 200 400 800 800 400] 0, 1/16 Tmmc 1…4 Time constant [msec] of cell populations motor cortex: [MP, SP, II, DP] [8 8 8 8] 0, 1/16 γtcr 1…3 Synaptic coupling strengths motor thalamus [Hz] [800 800 800] 0, 1/64 Ttcr 1…2 Time constants [msec] cell populations thalamus: [RET; REL] [8 8] 0, 1/64 λ 1…4 Extrinsic connections strengths: [CT and TC] [Hz] [800 800 800 800] 0, 1/16 B1…8 Condition-specific effects (on coupling strengths): [0] 0, 1/8 Rmmc Slope sigmoidal function: 2/3 0, 1/32 Rtcr Slope sigmoidal function: 2/3 0, 1/16 d1…2 Intrinsic delays [msec]: [within MMC; within THAL] [1] 0,0 D1…2 Extrinsic delays [msec]: [from MMC to THAL; from THAL to MMC] [8] 0,0 αc;βc Channel unspecific observation noise [0 0] 0, 1/128 αs;βs Channel specific observation noise [0 0] 0, 1/128 L Observation gain [1] 0, 64 J Contributing states: [SP, MP, DP] [0.6 0.2 0.2] 0, 1/16 hE Log-precision of observed data 12 0, 1/32 with previous models of the sensory cortex – and incorporating the work of Yamawaki et al., 2014 - Bhatt et al. (2016) used 3 excitatory sub- populations (neuronal ensembles consisting of “superficial”, “middle” and “deep” pyramidal cells located in the supragranular, granular and infragranular cortical layers, respectively) and one common inhibitory subpopulation (inhibitory interneurons) to model the primary motor cortex. In the MMC model, the coupling between these subpopulations (GABAergic or glutamatergic synapses) is tailored according to synaptic characteristics of the primary motor cortex: a reciprocal connection be- tween superficial and middle pyramidal cells (Yamawaki et al., 2014), a reciprocal connection between superficial and deep pyramidal cells (Hooks et al., 2013; Yamawaki and Shepherd, 2015; Anderson et al., 2010; Weiler et al., 2008), a reciprocal connection between each of the three pyramidal subpopulations and the common inhibitory subpopula- tion (Fino et al., 2013), and a cell type specific self-inhibitory connection (Bastos et al., 2012; Yoshimura and Callaway, 2005). The self-inhibitory connections aim to capture laminar-specific inhibition, mediated by local inhibitory neurons (K€atzel et al., 2011). For further discussion on recurrent inhibitory connections in the context of the canonical micro- circuit model, please refer to Auksztulewicz and Friston (2015). 2.3.3. Model inversion In DCM, model inversion iteratively tunes the model's parameters to optimize the fit of the predicted electrophysiological data to the observed data. Using a standard (variational) Bayesian scheme, model inversion uses priors to constrain the search of parameter space to explain the observed spectral features of electrophysiological data. When fitting the data (i.e., inverting the model), the optimization of model parameters uses a variational Laplace scheme to minimize a (free energy) bound on (negative) log model evidence. This free energy approximation to model evidence is subsequently used for model comparison (Friston et al., 2007; Friston and Stephan, 2007). A summary of the parameters described in this section and their prior values are shown in Table.1. Prior values were based on previous DCM studies (Bhatt et al. 2016) and optimized for our study. In brief, model evidence is the (marginal) likelihood of observing data given a model, pðyjmÞ. It reflects a balance between accuracy (goodness of fit between predicted and observed spectral densities) and complexity Fig. 3. Competing models of the Thalamocortical circuit as described by factors 1 and 2 (9 architectures times 16 modulatory configurations). The diagram on the top (factor 1: architecture) describes the 9 families of models constructed to elucidate which thalamocortical projections are the most plausible explanation for the generation of beta oscillations (1.- 3.) accounts for a singular projection from thalamus to motor cortex via superficial pyramidal cells, middle pyramidal cells and deep pyramidal cells; (4.- 6.) accounts for two afferents to two excitatory subpopulations of the motor cortex via superficial and middle pyramidal cells, middle and deep pyramidal cells and superficial plus deep pyramidal cells, and (7.- 9.) accounts for projections to the superficial pyramidal subpopulation and inhibitory interneurons, the middle pyramidal subpopulation and inhibitory interneurons and deep pyramidal cells and inhibitory interneurons. To disclose the synaptic modulation (intrinsic and/or extrinsic) responsible for an enhancement of beta power, the models on the bottom (factor 2: modulatory configuration) feature 16 different modulatory configurations, under each of the 9 architectures described above. The first eight set of connections (1.-8.) entail extrinsic and intrinsic synaptic modulation (except for model 8, with no intrinsic modulation) and the second eight set of connections (9.-16.) considers intrinsic modulation only. The intrinsic modulatory connections in family 2 were: (1. and 9.) cortical modulation via reciprocal connection between superficial and deep pyramidal subpopulations; (2. 2.3.3. Model inversion and 10.) cortical modulation via reciprocal connection between superficial and middle pyramidal subpopulations; (3. and 11.) cortical modulation via self-inhibitory connection of the inhibitory interneurons subpopulation; (4. and 12.) thalamic modulation via reciprocal connection between reticular cells and relay cells; (5. and 13.) cortical and thalamic modulation via reciprocal connection between superficial and deep pyramidal subpopulations plus reciprocal connection between reticular cells and relay cells; (6. and 14.) cortical modulation via reciprocal connection between superficial and middle pyramidal subpopulations plus reciprocal connection between reticular cells and relay cells; (7. and 8.) self-inhibitory connection of the inhibitory interneuron subpopulation plus reciprocal connection between reticular cells and relay cells and lastly, (8. and 16.) the null hypothesis that neither extrinsic nor intrinsic connections change to explain condition specific changes in cortical beta power (i.e. enhancement of beta). Fig. 3. Competing models of the Thalamocortical circuit as described by factors 1 and 2 (9 architectures times 16 modulatory configurations). The diagram on the top (factor 1: architecture) describes the 9 families of models constructed to elucidate which thalamocortical projections are the most plausible explanation for the generation of beta oscillations (1.- 3.) accounts for a singular projection from thalamus to motor cortex via superficial pyramidal cells, middle pyramidal cells and deep pyramidal cells; (4.- 6.) accounts for two afferents to two excitatory subpopulations of the motor cortex via superficial and middle pyramidal cells, middle and deep pyramidal cells and superficial plus deep pyramidal cells, and (7.- 9.) accounts for projections to the superficial pyramidal subpopulation and inhibitory interneurons, the middle pyramidal subpopulation and inhibitory interneurons and deep pyramidal cells and inhibitory interneurons. To disclose the synaptic modulation (intrinsic and/or extrinsic) responsible for an enhancement of beta power, the models on the bottom (factor 2: modulatory configuration) feature 16 different modulatory configurations, under each of the 9 architectures described above. The first eight set of connections (1.-8.) entail extrinsic and intrinsic synaptic modulation (except for model 8, with no intrinsic modulation) and the second eight set of connections (9.-16.) considers intrinsic modulation only. The intrinsic modulatory connections in family 2 were: (1. and 9.) cortical modulation via reciprocal connection between superficial and deep pyramidal subpopulations; (2. and 10.) cortical modulation via reciprocal connection between superficial and middle pyramidal subpopulations; (3. and 11.) cortical modulation via self-inhibitory connection of the inhibitory interneurons subpopulation; (4. 2.3.2. Neural dynamics In DCM, neural dynamics (i.e., fluctuations in voltages and currents) at the subpopulation level is described by two key operations (Eq. (2)): a convolution operator and an output operator (Moran et al., 2007). The convolution operator transforms presynaptic inputs (firing rate) into postsynaptic membrane potentials based on a synaptic impulse response function, which considers the nature of the synapse (i.e. excitatory or inhibitory). The output operator consists of a non-linear function that converts the postsynaptic membrane potentials into a firing rate to be relayed to another subpopulation. This is conveyed through a sigmoid function S which captures the membrane sensitivity and firing threshold of each In this study, we used DCM for cross spectral density (Moran et al., 2009, 2011) where the data generated by a model of neural hidden states 106 C. Reis et al. NeuroImage 193 (2019) 103–114 are expressed as cross spectra in channel space (ECoG screw electrodes). In the context of electrophysiological recordings, the mapping between neural states and observed signals is achieved by a gain function - unlike EEG/MEG data where an electromagnetic forward model is used. Contribution of each neural population to the cortical output is weighted according to parameter J (Table 1 - contributing states: [Superficial, Middle and Deep Pyramidal populations] - [0.6 0.2 0.2]) scaled by observation gain L (Table 1 - [1]). A detailed description of the trans- formation from state space to the frequency domain can be found in Friston et al. (2012) (pages 442 and 443; section “From models to ker- nels”: equations (5)–(7)). 2.3.4. Bayesian Model Comparison and parameters analysis A set of models were implemented which varied according to 2 fac- tors: i) the laminar-specificity of thalamocortical projections that generate beta oscillations, and ii) the changes in synaptic connectivity within the TC loop (intrinsic and/or extrinsic) required to induce a transition from a low beta power condition to a high beta power condition. The model with the highest evidence for the transition from low beta epochs to high beta epochs (Fig. 4) was that with i) an architecture featuring thalamocortical projections from the REL-DP and REL-II in cortex and ii) modulatory changes in: intrinsic connections at the cortical level between SP-MP; intrinsic connections at the thalamic level, be- tween REL-RET; corticothalamic extrinsic connections from DP-REL and DP-RET and thalamocortical connections from REL-DP and REL-II. The set of differential equations explaining the neural dynamics of the win- ning model can be found in the supplementary materials (Fig.S5). The winning model shows a free energy difference (i.e., log Bayes factor) of approximately 6 from the next closest model (Fig.S2). This corresponds to very high evidence for the winning model, in relation to alternative explanations. The first factor comprised 9 families (types) of models. These models had identical intrinsic and corticothalamic connections as described in section 2.3.1 and illustrated in Fig. 2 but differed in the laminar targets of thalamocortical afferents: 1) superficial pyramidal cells; 2) middle py- ramidal cells; 3) deep pyramidal cells; 4) superficial plus middle pyra- midal cells; 5) middle plus deep pyramidal cells; 6) superficial plus deep pyramidal cells; 7) superficial pyramidal cells plus inhibitory in- terneurons; 8) middle pyramidal cells plus inhibitory interneurons and 9) deep pyramidal cells plus inhibitory interneurons (Fig. 3, top panel). Using fixed-effects Bayesian Model Comparison (FFX-BMC) to make inferences at the family level, the architecture with thalamic projections to DP and II showed the highest evidence across subjects (Fig. 5A). Similarly, the condition specific effects in the reciprocal connection be- tween SP -MP, REL-RET and DP-REL plus connections from DP-RET and REL-II had the highest posterior probability (Fig. 5B). These results confirm our hypothesis that both the laminar-specificity of extrinsic connectivity and intrinsic connections are key elements underlying the modulation of oscillatory activity in the beta band. The second factor comprised 16 families of models that varied in the set of connections that could show condition specific effects. 3.2. Parameter analysis The results from our second level analysis (PEB modelling of A,G,B and T parameters at the group level) suggest that the transition from low beta state to high beta state is induced by i) an increase in synaptic strength in connections from relay cells to inhibitory interneurons, relay cells to deep pyramidal cells, middle pyramidal cells to superficial py- ramidal cells and relay to reticular cells; plus ii) a reduction of synaptic strength in connections from superficial to middle pyramidal cells, deep pyramidal to both relay and reticular cells and from reticular to relay Fig. 4. Observed and expected power spectral densities (PSD). (A) Spectral features to be explained by a DCM: Red lines depict the mean high beta spectral densities and blue lines the mean low beta spectral densities from each of the 36 rats. (B) Group mean of HB spectral densities in red and LB spectral densities in blue. Respective variabilities (75th and 25th percentiles of the mean spectra) denoted in light red and light blue. (C) Goodness of the fits between mean data spectral densities and spectral densities generated by the winning model. The full red line shows the mean of high beta data and the dark red dashed line the high beta spectra estimated by the winning model (correlation coefficient, r ¼ 0.9997). The full dark blue line refers to the mean of low beta data and the dark blue dashed line to the low beta spectra produced by the winning model (correlation coefficient, r ¼ 0.9957). Fig. 4. Observed and expected power spectral densities (PSD). (A) Spectral features to be explained by a DCM: Red lines depict the mean high beta spectral densities and blue lines the mean low beta spectral densities from each of the 36 rats. (B) Group mean of HB spectral densities in red and LB spectral densities in blue. Respective variabilities (75th and 25th percentiles of the mean spectra) denoted in light red and light blue. (C) Goodness of the fits between mean data spectral densities and spectral densities generated by the winning model. The full red line shows the mean of high beta data and the dark red dashed line the high beta spectra estimated by the winning model (correlation coefficient, r ¼ 0.9997). 2.3.4. Bayesian Model Comparison and parameters analysis For each one of the 9 architectures in the first factor, we explored condition specific effects by including or not the following features: intracortical modula- tory synapses; intrathalamic modulatory synapses and extrinsic (between cortex and thalamus) modulatory synapses (Fig. 3, bottom panel). There were therefore 9  16 ¼ 144 candidate models in total. Bayesian Model Comparison (BMC) was used to determine the model with the highest log-model evidence among the models described above (Stephan et al., 2010). We then characterised the parameters of the winning model at the group level using Parametric Empirical Bayes (PEB) (Friston et al., 2015). In brief, PEB uses a hierarchical model, where the parameters from each subject's DCM are summarized by a posterior density (the expected connectivity strength and posterior covariance). Random effects at the between subject level are similarly inferred to inform the group-level parameter estimates. This means that PEB allows for estimation of fixed and random effects in an optimal fashion; implicitly reducing the influence of “outlier subjects” on the posterior 3. Results 3. Results 2.3.3. Model inversion and 12.) thalamic modulation via reciprocal connection between reticular cells and relay cells; (5. and 13.) cortical and thalamic modulation via reciprocal connection between superficial and deep pyramidal subpopulations plus reciprocal connection between reticular cells and relay cells; (6. and 14.) cortical modulation via reciprocal connection between superficial and middle pyramidal subpopulations plus reciprocal connection between reticular cells and relay cells; (7. and 8.) self-inhibitory connection of the inhibitory interneuron subpopulation plus reciprocal connection between reticular cells and relay cells and lastly, (8. and 16.) the null hypothesis that neither extrinsic nor intrinsic connections change to explain condition specific changes in cortical beta power (i.e. enhancement of beta). 107 C. Reis et al. NeuroImage 193 (2019) 103–114 density at the group level. Note that in Bayesian inference, (unstan- dardized) effect sizes are available explicitly in terms of posterior ex- pectations and Bayesian credible intervals (Standardized effect sizes such as correlations are replaced by differences in model evidence – implicit in Bayesian model comparison). Here, only a subset of parameters was taken to the group level and assumed to exhibit random effects: synaptic coupling strength of intrinsic and extrinsic connections (G and A pa- rameters in the DCM respectively); condition-specific effects on coupling strength (B parameters) and the time constants of subpopulations (T). (divergence between prior and posterior parameter estimates) (Stephan et al., 2010). This balance depends upon the expected precision of the observed data. Given the high signal to noise ratio in the data obtained using the electrocorticographic recording method, the expected precision of observed data was assumed to be high (with a log precision of 12). At this stage, low beta power was set as our baseline condition (with prior expectations optimized to best explain its spectral features). Condition-specific effects (B parameters) on both extrinsic (between-re- gions) and intrinsic (within-regions) coupling strengths (Moran et al., 2007) were used to explain periods of high beta power. In other words, we estimated the changes in synaptic efficacy required to move from a low beta power condition to a high beta power condition. 3.2. Parameter analysis The full dark blue line refers to the mean of low beta data and the dark blue dashed line to the low beta spectra produced by the winning model (correlation coefficient, r ¼ 0.9957). 108 C. Reis et al. NeuroImage 193 (2019) 103–114 C. Reis et al. Fig.5. Schematic and posterior probability of the winning model selected via FFX-BMC. Diagram and bar plot (A) refer to architecture of the win- ning model (Fig. 3, Factor 1: Architecture, num- ber 9). These results suggest that thalamocortical projection to the deep pyramidal cells and cortical inhibitory subpopulation (in thick lines) were crucial for the generation of beta oscillations and that this effect was consistently observed across subjects (posterior probability of 1). Diagram and bar plot (B) indicate the modulatory connections of our winning model (Fig. 3, Factor 2: Modula- tory configuration, number 6). The diagram shows the set of connections as thick lines to have a higher likelihood (compared to the homologous 15) of inducing the power spectral changes observed (beta enhancement). These being: a reciprocal connection between superficial and middle pyramidal subpopulations, reciprocal connection between thalamic relay and reticular subpopulation and a reciprocal extrinsic connec- tion between deep pyramidal cells and thalamic relay cells, an extrinsic connection from deep pyramidal cells to thalamic reciprocal cells and from thalamic relay cells to cortical inhibitory interneurons. The bar plot shows a posterior probability greater than 0.99 for the modulatory configuration described above and a negligible posterior probability of approximately 0.004 for a modulatory configuration which assumed the same modulatory characteristics as the winning model except for the intrinsic synaptic mecha- nisms of the motor cortex; i.e., presenting an intracortical modulation via reciprocal connec- tions between superficial and deep pyramidal cells instead of reciprocal connections between superficial and middle pyramidal cells. (Ex.- extrinsic connections, r. - reciprocal connections, sp. - superficial pyramidal cells, mp.-middle py- ramidal cells, dp. - deep pyramidal cells, ii.- inhibitory interneurons, rel. – relay cells and ret. – reticular cells). cells (Fig. 6). Additionally, from the posterior distribution of our B pa- rameters we assessed the effect size of each modulatory connection on the enhancement of beta – illustrated in the bar plot below (Fig. 6). explain beta enhancement: REL-DP, MP-SP and REL-RET; we further analysed, via forward modelling, the impact of simultaneous alteration of the above connection strengths on the magnitude of beta power. 3.2. Parameter analysis As such, we aimed to characterize the contribution of these three parameters to Considering the connections that showed the greatest change to Fig. 6. Average modulatory effect of B parameters (condition-specific parameters) obtained via Parametric empirical Bayes analysis (Friston et al., 2015). The two bar plots on the left-hand side illustrate the absolute connection strength of each modulatory connection in the low and high beta conditions. The bar plot in the centre shows how connectivity strength of B parameter changed at the group level in order to induce an increase of beta power. Negative values of change indicate a reduction in connectivity strength and positive values an increase. The anatomy of these connections is illustrated in the diagram on the right-hand side. Fig. 6. Average modulatory effect of B parameters (condition-specific parameters) obtained via Parametric empirical Bayes analysis (Friston et al., 2015). The two bar plots on the left-hand side illustrate the absolute connection strength of each modulatory connection in the low and high beta conditions. The bar plot in the centre shows how connectivity strength of B parameter changed at the group level in order to induce an increase of beta power. Negative values of change indicate a reduction in connectivity strength and positive values an increase. The anatomy of these connections is illustrated in the diagram on the right-hand side. Fig. 6. Average modulatory effect of B parameters (condition-specific parameters) obtained via Parametric empirical Bayes analysis (Friston et al., 2015). The two bar plots on the left-hand side illustrate the absolute connection strength of each modulatory connection in the low and high beta conditions. The bar plot in the centre shows how connectivity strength of B parameter changed at the group level in order to induce an increase of beta power. Negative values of change indicate a reduction in connectivity strength and positive values an increase. The anatomy of these connections is illustrated in the diagram on the right-hand side. 109 C. Reis et al. NeuroImage 193 (2019) 103–114 nature of beta power observed in Parkinsonian time-series. the gradual transition between the two states – low and high beta power. To do so, we have effectively replaced the MP-SP and REL-RET posteriors with values between 1 and 1 and plotted the summed beta spectral output (15–35 Hz) normalised by the summed beta spectral output (15–35 Hz) in the baseline condition (i.e. low beta power). 3.2. Parameter analysis This post hoc simulation allows us to characterize the selective effect of specific con- nections on the expression of cortical beta power level. Fig. 7A, suggests that when the intrinsic thalamic connection from relay to reticular cells have low levels of coupling strength, high beta power appears abruptly as the coupling strength from middle to superficial pyramidal cells is increased. This emergence of beta is modulated by the gradual change in coupling strength from thalamic relay cells to deep pyramidal cells, where reduced coupling leads to higher levels of beta. Focusing on the Thalamocortical loop of the BGTC circuit, we have employed DCM to identify a model of TC interactions that offers plausible substrates for the transient enhancement of cortical beta. Our study suggests two core features of the thalamocortical circuit that may un- derwrite the genesis of beta oscillations in the parkinsonian state: 1) laminar specific thalamocortical projections; and 2) modulation of syn- aptic strength across all network levels (i.e. within and between structures). To model different levels of beta synchrony, we extracted low beta epochs and high beta power epochs from motor cortex ECoG recordings acquired from urethane-anesthetized rodents rendered Parkinsonian by 6-OHDA lesions. This rodent model is useful in capturing the chronic dopamine depletion that is common to ‘late stage’ PD, and has been widely used for studies of the mechanisms by which excessive beta synchrony arises and propagates within the BGTC circuit in Parkin- sonism. Although urethane has been shown to alter the function of multiple neurotransmitter receptors - which will dictate various aspects of neural activity such as firing rate – its effects occur to a much smaller extent when compared to other anaesthetics (Hara and Harris, 2002). The dose of urethane allows clear differentiation of slow wave and activated states; only the latter of which resembles the awake brain state and contains abnormally sustained beta oscillations in the dopamine depleted animal (Mallet et al., 2008a, b; Sharott et al., 2017). Finally, the abnormal beta oscillations present in the BGTC circuit in anesthetized and behaving 6-OHDA lesioned are similar in many respects to those present in unmedicated people with PD (Avila et al., 2010; Brazhnik et al., 2016; Degos et al., 2009; Mallet et al., 2008a, 2008b; Nevado-- Holgado et al., 2014; Sharott et al., 2005, 2017). On the other hand, Fig. 3.2. Parameter analysis 7B, suggests that when the connectivity from relay to reticular cells is high, a concurrent increase in the coupling from both relay to deep pyramidal cells and middle to superficial pyramidal cells is required to achieve beta power enhancement. In short, the level of cortical beta depends on the magnitude of excitatory inputs to both su- perficial and deep pyramidal. We additionally explored the spectral output of each subpopulation of our TC neural mass model (Fig. 8) and observed that all nodes generated spectral curves within the beta band during both conditions and increased their power from condition one (LB) to two (HB) as expected. Please note that the plotted curves represent the source-space activity, which has been estimated separately for each data set. 4. Discussion In this study, we aimed to identify the network mechanisms that contribute to the dynamic regulation of beta synchrony in the parkin- sonian motor cortex. In-vivo studies of the basal ganglia thalamocortical (BGTC) circuit suggest that alterations in the firing rate across the direct and indirect pathways are responsible for the motor impairments observed in PD (Albin et al., 1989; DeLong, 1990; Nambu, 2004). Simi- larly, in-silico simulations of the BGTC circuit propose that an altered coupling from the subthalamic nucleus to globus pallidus externus, and strengthening of the hyperdirect pathway play an important role in the enhancement of beta synchrony following chronic dopamine depletion (Marreiros et al., 2013; Moran et al., 2011). We have used DCM in this study since it allows for the quantification of effective connectivity changes underlying transient modulations in cortical beta power. Bhatt et al., 2016 have previously employed DCM to link interlaminar dynamics within the motor cortex to the modulation of beta activity, evoked by movement. Fitting MEG data from healthy subjects to a neural mass model of the motor cortex, Bhat and colleagues reported that the increase in beta power observed due to the transition from grip to rest was induced by an increase in the extrinsic input applied to deep and superficial layers of the cortex. Our study suggests that beta power enhancement in Parkinsonism can be attributed to an increase in excitatory inputs to SP and DP; specifically from MP and thalamic relay cells, respectively – and a concomitant reduction of excitatory input to MP. In addition, our results highlight the importance of intrinsic in- teractions in the thalamus for beta power modulation as the excitatory projection from the thalamic relay cells to reticular cells also contributes Our study complements the literature on PD, while exploring two novel concepts: i) laminar-specific dynamics within the motor circuit as a putative mechanism for the spontaneous modulation of beta power and ii) short-term synaptic processes, i.e. transient alterations in effective connectivity to be responsible for the spontaneous and intermittent Fig. 7. Exploration of parameters space of connections with the greatest effect on beta enhancement. Plot A. shows the impact of changing the coupling strength of MP- SP and REL-DP on the beta spectral output, when the coupling between REL-RET is weak. to cortical beta enhancement (Fig. 6). e targeted in order to control and modulate cortical beta. could be targeted in order to control and modulate cortical beta. Similarly, focusing on cortical intrinsic dynamics, Sherman et al. (2016) used a computational model to generate transient high beta power events (i.e. beta bursts), which were temporally identical to those observed in the somatosensory and frontal cortices in the physiological state. Two circuit features have been proposed as crucial for the gener- ation of beta bursts: 1) a drive from the lemniscal thalamus to the proximal dendrites of the pyramidal neurons and inhibitory interneurons in L2/3 and L5 (via the granular layer) and 2) a strong drive from the nonlemniscal thalamus to the distal dendrites of the pyramidal neurons and inhibitory interneurons found in supragranular and infragranular layers. An important difference between Sherman et al. (2016) and our study stems from the assumptions made on thalamic activity patterns. Sherman et al. (2016) posit that thalamic activity should be in the alpha band to drive beta bursts in the somatosensory and frontal cortices. However, in our study, thalamic neurons exhibited activity in the beta band during both low and high beta power conditions (Fig. 8). Our results are sup- ported by recent experimental work showing a substantial and coherent enhancement of beta activity (30–36 Hz) in the motor thalamus and motor cortex of behaving 6-OHDA-lesioned rats (Brazhnik et al., 2016). There is also evidence of aberrant beta synchrony in the thalamus of unmedicated PD patients (Kempf et al., 2009). Taken together, these results emphasise that thalamic neural activity in the beta band is likely to be a contributing circuit feature for the generation of aberrant beta synchronization in PD, and highlight a functional coupling between the thalamus and deep layers of the motor cortex. It should be noted that due to the nature of the neural mass models employed in this study, we were not able to model detailed dendritic dynamics that contribute to the generation and modulation of neural activity in the beta band. Instead, here we have assumed fixed conduc- tion delays for all within-region connections (1 m s) and between-regions projections (8 m s) and did not account for variable propagation delays for inputs arriving to distal and proximal dendrites. 4. Discussion Here, although an in- crease in synaptic strength from MP-SP is enough to generate relatively high levels of beta spectral output, the connection from REL-DP seems to have a modulatory ef- fect, i.e., the weaker the extrinsic coupling between relay and deep pyramidal cells the higher the beta spectral output. Plot B. considers a (constantly) strong coupling between REL-RET with the same changes in coupling strength between MP-SP and REL-DP. This time, we observe that an increase in beta is achieved with a con- current strengthening of both MP-SP and REL-DP connec- tions. In both plots, axis x and y denote a reduced connectivity strength when values are between 1 and 0 and an increased connectivity strength when values are between 0 and 1 for connections from middle pyramidal cells to superficial pyramidal cells and from relay cells to deep pyramidal cells respectively. Axis Z and colormap depict the magnitude of beta power. Fig. 7. Exploration of parameters space of connections with the greatest effect on beta enhancement. Plot A. shows the impact of changing the coupling strength of MP- SP and REL-DP on the beta spectral output, when the coupling between REL-RET is weak. Here, although an in- crease in synaptic strength from MP-SP is enough to generate relatively high levels of beta spectral output, the connection from REL-DP seems to have a modulatory ef- fect, i.e., the weaker the extrinsic coupling between relay and deep pyramidal cells the higher the beta spectral output. Plot B. considers a (constantly) strong coupling between REL-RET with the same changes in coupling strength between MP-SP and REL-DP. This time, we observe that an increase in beta is achieved with a con- current strengthening of both MP-SP and REL-DP connec- tions. In both plots, axis x and y denote a reduced connectivity strength when values are between 1 and 0 and an increased connectivity strength when values are between 0 and 1 for connections from middle pyramidal cells to superficial pyramidal cells and from relay cells to deep pyramidal cells respectively. Axis Z and colormap depict the magnitude of beta power. 110 C. Reis et al. Fig. 8. Spectral output of subpopulations at Low Beta (LB) and High Beta (HB). All neural groups (in cortex and thalamus) have generated spectral responses within the beta band in both conditions as expected. to cortical beta enhancement (Fig. 6). This creates a distinction between the excitatory input received by the superficial py- ramidal cells versus those received by the deep pyramidal cells and the common inhibitory population; since the latter are attributed to extrinsic projections from thalamus and hence are inherently modelled with longer conduction delays. Nonetheless, our results relate to the obser- vations made in Sherman et al. (2016), given that comparable circuitry mechanisms yielded similar oscillatory effects. In other words, both studies propose that laminar specific glutamatergic inputs to the motor cortex must occur at two temporally separate instances in order to ach- ieve high beta power oscillatory activity. 4.1. Limitations and future directions We would like to highlight that in DCM, “winning model” is a relative terminology. Winning model is effectively the most plausible model to generate the observed data among the set of models tested. As indeed there are plenty of configurations a neural mass model can assume (here 144 were tested), DCM is only a robust method if used as a hypothesis- driven approach (Stephan et al., 2010). Finally, an interesting extension of this study would involve using a conductance based neural mass model of the thalamocortical circuit to investigate in detail the intrinsic neurotransmitter dynamics underlying beta enhancement in the parkinsonian thalamocortical circuit. While convolution-based models are useful in explaining the “macroscopic mechanisms” underlying a given data set, such as network architecture and effective connectivity; conductance-based models would capture the dynamics of intrinsic ion channel mediators, such as Glutamaergic and GABAergic receptors (refer to Moran et al., 2013). This could be extremely interesting given the modulatory role that GABA-A is thought to exert over beta oscillations (Brazhnik et al., 2016; Hall et al., 2010; Jensen et al., 2005; Yamawaki et al., 2008). Furthermore, it is worth noting that alternative models of the TC circuit showing thalamic projections to both the superficial and deep layers of the motor cortex (i.e., all models with architecture number 6, shown in Fig. 3), had lower model evidences than the winning model. Possibly because, unlike the winning model, simultaneous projections from thalamic relay cells to superficial and deep layers do not allow for a differentiation in input delays. Our detailed analysis of the parameter space on gradual beta increase, opposed to a transition from extremely low to extremely high beta power, further corroborated that the intrinsic (shorter delay) input from middle to superficial cells should have high levels of synaptic strength – together with the extrinsic (longer delay) input from the thalamic relay to deep pyramidal cells – to explain an up- regulation of beta synchrony when the coupling from thalamic relay to reticular is strong. (Fig. 7B). Nevertheless, taking both scenarios into account – strong vs weak connectivity from relay cells to reticular cells - projections to superficial pyramidal cells via middle pyramidal cells must assume a moderate coupling strength to avoid a ramping up of beta synchrony at the cortical level; highlighting a potential substrate that 4. Discussion Together with an increase in power a small increase in frequency peak of approximately 1–2 Hz is also apparent – when comparing the output generated in condition 1 (LB) with condition 2 (HB). Full curves represent the median spectral output across the 36 animals and shaded regions refer to the 25th and 75th percentiles. C. Reis et al. NeuroImage 193 (2019) 103 114 Fig. 8. Spectral output of subpopulations at Low Beta (LB) and High Beta (HB). All neural groups (in cortex and thalamus) have generated spectral responses within the beta band in both conditions as expected. Together with an increase in power a small increase in frequency peak of approximately 1–2 Hz is also apparent – when comparing the output generated in condition 1 (LB) with condition 2 (HB). Full curves represent the median spectral output across the 36 animals and shaded regions refer to the 25th and 75th percentiles. References Friston, K., Harrison, L., Penny, W., 2003. Dynamic causal modelling. Neuroimage 19, 1273–1302. Albin, R.L., Young, A.B., Penney, J.B., 1989. The functional anatomy of basal ganglia disorders. Trends Neurosci. 12 (10), 366–375. Albin, R.L., Young, A.B., Penney, J.B., 1989. The functional anatomy of basal ganglia disorders. Trends Neurosci. 12 (10), 366–375. https://doi.org/10.1016/0166-2236(89)90074-X. Friston, K., Mattout, J., Trujillo-Barreto, N., Ashburner, J., Penny, W., 2007. Variational free energy and the Laplace approximation. Neuroimage 34 (1), 220–234. https://d oi.org/10.1016/j.neuroimage.2006.08.035. https://doi.org/10.1016/0166-2236(89)90074-X. Anderson, C.T., Sheets, P.L., Kiritani, T., Shepherd, G.M.G., 2010. Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nat. Neurosci. 13 (6), 739–744. https://doi.org/10.1038/nn.2538. Friston, K., Stephan, K.E., 2007. Free-energy and the brain. Synthese 159 (3), 417–458. https://doi.org/10.1007/s11229-007-9237-y. Arbuthnott, G.W., MacLeod, N.K., Maxwell, D.J., Wright, A.K., 1990. Distribution and synaptic contacts of the cortical terminals arising from neurons in the rat ventromedial thalamic nucleus. Neuroscience 38, 47–60. Friston, K.J., Bastos, A., Litvak, V., Stephan, K.E., Fries, P., Moran, R.J., 2012. DCM for complex-valued data: cross-spectra, coherence and phase-delays. Neuroimage 59 (1), 439–455. https://doi.org/10.1016/j.neuroimage.2011.07.048. Auksztulewicz, R., Friston, K., 2015. Attentional enhancement of auditory mismatch responses: a DCM/MEG study. Cerebr. Cortex 25 (11), 4273–4283. https://doi.org/ 10.1093/cercor/bhu323. p g j g Friston, K., Zeidman, P., Litvak, V., 2015. Empirical Bayes for DCM: a group inversion scheme. Front. Syst. Neurosci. 9. https://doi.org/10.3389/fnsys.2015.00164. Gatev, P., Darbin, O., Wichmann, T., 2006. Oscillations in the basal ganglia under normal conditions and in movement disorders. Mov. Disord. 21 (10), 1566–1577. https:// doi.org/10.1002/mds.21033. Avila, I., Parr-Brownlie, L.C., Brazhnik, E., Casta~neda, E., Bergstrom, D.A., Walters, J.R., 2010. Beta frequency synchronization in basal ganglia output during rest and walk in a hemiparkinsonian rat. Exp. Neurol. 221 (2), 307–319. https://doi.org/10.1016/j.ex pneurol.2009.11.016. g Gradinaru, V., Mogri, M., Thompson, K.R., Henderson, J.M., Deisseroth, K., 2009. Optical deconstruction of parkinsonian neural circuitry. Science 324, 354–359. https:// doi.org/10.1126/science.1167093. Barker, A.T., Jalinous, R., Freeston, I.L., 1985. Non-invasive magnetic stimulation of human motor cortex. Lancet 325 (8437), 1106–1107. https://doi.org/10.1016/S0140-6736(85)92413-4. Hall, S.D., Yamawaki, N., Fisher, A.E., Clauss, R.P., Woodhall, G.L., Stanford, I.M., 2010. GABA(A) alpha-1 subunit mediated desynchronization of elevated low frequency oscillations alleviates specific dysfunction in stroke–a case report. Clin. Neurophysiol. 121, 549–555. Bastos, A.M., Usrey, W.M., Adams, R.A., Mangun, G.R., Fries, P., Friston, K.J., 2012. Canonical microcircuits for predictive coding. Neuron 76 (4), 695–711. https ://doi.org/10.1016/j.neuron.2012.10.038. Hammond, C., Bergman, H., Brown, P., 2007. Pathological synchronization in Parkinson's disease: networks, models and treatments. Trends Neurosci. 30 (7), 357–364. htt ps://doi.org/10.1016/j.tins.2007.05.004. Conflicts of interest p g Clasca, F., Rubio-Garrido, P., Jabaudon, D., 2012. Unveiling the diversity of thalamocortical neuron subtypes. Eur. J. Neurosci. 35, 1524–1532. thalamocortical neuron subtypes. Eur. J. Neurosci. 35, 1524–1532 None. Cox, C.L., Huguenard, J.R., Prince, D.A., 1997. Nucleus reticularis neurons mediate diverse inhibitory effects in thalamus. Proc. Natl. Acad. Sci. Unit. States Am. 94 (16) 8854–8859. https://doi.org/10.1073/pnas.94.16.8854. 5. Conclusion A broadly accepted postulate concerning healthy and Parkinsonian states of the CBGTC circuit is that they exhibit differential patterns of synchronization at beta frequencies (Brittain and Brown, 2014; Gatev et al., 2006; Hammond et al., 2007). While exaggerated beta synchro- nization has been associated with more frequent high power beta bursts in PD (Tinkhauser et al., 2017; Little et al., 2013), healthy states seem to manifest as an adequate proportion of high beta events and therefore a 111 C. Reis et al. NeuroImage 193 (2019) 103–114 in the basal ganglia-thalamocortical network of the hemiparkinsonian rat. flexible motor behaviour (Feingold et al., 2015; Sherman et al., 2016). Following this reasoning, a recognition of the mechanisms adopted by the CBGTC network to regulate beta spectral undulations is vital to better understand healthy and diseased states; and consequently, inform novel therapeutic strategies. Here, using DCM, we highlight a set of synaptic alterations in the thalamocortical loop that elucidate how the transitions of beta synchrony from low to high levels might occur in Parkinson's disease. We provide a new perspective for the effective coupling of the Parkinsonian thalamocortical network, where a fine regulation of temporally different inputs to specific laminae of the motor cortex may underlie the spontaneous and transient variability in oscillatory neural activity in the beta band across the circuit. J. Neurosci. 36 (15), 4196–4208. https://doi.org/10.1523/JNEUROSCI.3582-15.201 6. Brittain, J.-S., Brown, P., 2014. Oscillations and the basal ganglia: motor control and beyond. Neuroimage 85, 637–647. https://doi.org/10.1016/j.neuroimage.2013.05.0 84. Brown, P., 2007. Abnormal oscillatory synchronisation in the motor system leads to impaired movement. Curr. Opin. Neurobiol. 17, 656–664. Brown, P., Oliviero, A., Mazzone, P., Insola, A., Tonali, P., Lazzaro, V.D., 2001. Dopamine dependency of oscillations between subthalamic nucleus and. Pallidum in Parkinson’s Disease 21 (3), 1033–1038. Buzsaki, G., Draguhn, A., 2004. Neuronal oscillations in cortical networks. Science 304 (5679), 1926–1929. https://doi.org/10.1126/science.1099745. Cantello, R., 2002. Transcranial magnetic stimulation and Parkinson's disease. Brain Res. Rev. 38 (3), 309–327. https://doi.org/10.1016/S0165-0173(01)00158-8. Cassidy, M., Mazzone, P., Oliviero, A., Insola, A., Tonali, P., Lazzaro, V.D., Brown, P., 2002. Movement-related changes in synchronization in the human basal ganglia. Brain 125 (6), 1235–1246. https://doi.org/10.1093/brain/awf135. Appendix A. Supplementary data Foffani, G., Bianchi, A.M., Baselli, G., Priori, A., 2005. Movement-related frequency modulation of beta oscillatory activity in the human subthalamic nucleus: movement- related FM in the human STN. J. Physiol. 568 (2), 699–711. https://doi.org/10 .1113/jphysiol.2005.089722. Supplementary data to this article can be found online at https://doi. org/10.1016/j.neuroimage.2019.03.009. Fries, P., 2005. A mechanism for cognitive dynamics: neuronal communication through neuronal coherence. Trends Cognit. Sci. 9 (10), 474–480. https://doi.org/10.1016/j.t ics.2005.08.011. Acknowledgements Degos, B., Deniau, J.-M., Chavez, M., Maurice, N., 2009. Chronic but not acute dopaminergic transmission interruption promotes a progressive increase in cortical beta frequency synchronization: relationships to vigilance state and akinesia. Cerebr. Cortex 19 (7), 1616–1630. https://doi.org/10.1093/cercor/bhn199. This work was supported by studentships (BRT00040) and research funding (MR/R020418/1) from the Medical Research Council (MRC). AS was supported by the MRC (award MC_UU_12024/1). PJM was sup- ported by the MRC (awards UU138197109, MC_UU_12020/5 and MC_UU_12024/2) and Parkinson's UK (grant G-0806). BW received funding from the European Union’s Horizon 2020 research and innova- tion programme under the Marie Sklodowska-Curie grant agreement No 795866. TP is supported by the Rosetrees Trust (173346). KJF is a Wellcome Principal Research Fellow (Ref: 088130/Z/09/Z). We thank Dr. N. Mallet for acquiring some of the primary data sets in rodents. DeLong, M.R., 1990. Primate models of movement disorders of basal ganglia origin. Trends Neurosci. 13 (7), 281–285. https://doi.org/10.1002/mrm.20508. Douglas, R.J., Martin, K.A.C., 2004. Neural circuits of the neocortex. Annu. Rev. Neurosci. 27 (1), 419–451. https://doi.org/10.1146/annurev.neuro.27.070203.144152. Eusebio, A., Pogosyan, A., Wang, S., Averbeck, B., Gaynor, L.D., Cantiniaux, S., et al., 2009. Resonance in subthalamo-cortical circuits in Parkinson's disease. Brain 132 (8), 2139–2150. https://doi.org/10.1093/brain/awp079. Feingold, J., Gibson, D.J., DePasquale, B., Graybiel, A.M., 2015. Bursts of beta oscillation differentiate postperformance activity in the striatum and motor cortex of monkeys performing movement tasks. Proc. Natl. Acad. Sci. Unit. States Am. 112 (44), 13687–13692. https://doi.org/10.1073/pnas.1517629112. Fino, E., Packer, A.M., Yuste, R., 2013. The logic of inhibitory connectivity in the neocortex. Neuroscientist 19 (3), 228–237. https://doi.org/10.1177/107385841 2456743. References Neurosci. 7. https://doi.org/10.3389/fncom.2013.00057. Jansen, B.H., Rit, V.G., 1995. Electroencephalogram and visual evoked potential generation in a mathematical model of coupled cortical columns. Biol. Cybern. 73, 357–366. Murray Sherman, S., Guillery, R.W., 2001. Exploring the Thalamus. Academic Press, pp. 59–107. https://doi.org/10.1016/B978-012305460-9/50017-4. Jensen, O., Goel, P., Kopell, N., Pohja, M., Hari, R., Ennentrout, B., 2005. On the human sensorimotor-cortex beta rhythm: sources and modeling. Neuroimage 26, 347–355. Nakamura, K.C., Sharott, A., Magill, P.J., 2014. Temporal coupling with cortex distinguishes spontaneous neuronal activities in identified basal ganglia-recipient and cerebellar-recipient zones of the motor thalamus. Cerebr. Cortex 24 (1), 81–97. https://doi.org/10.1093/cercor/bhs287. Jenkinson, N., Brown, P., 2011. New insights into the relationship between dopamine, beta oscillations and motor function. Trends Neurosci. 34 (12), 611–618. https://do i.org/10.1016/j.tins.2011.09.003. Nambu, A., 2004. A new dynamic model of the cortico-basal ganglia loop. In: Progress in Brain Research, vol. 143. Elsevier, pp. 461–466. https://doi.org/10.1016/S0079-6123(03)43043-4. Jones, E.G., Burton, H., Porter, R., 1975. Commissural and cortico–cortical ‘columns’ in the somatic sensory cortex of primates. Science 190, 572–574. y Jones, E.G., 2001. The thalamic matrix and thalamocortical synchrony. Trends Neurosci. 24 (10), 595–601. https://doi.org/10.1016/S0166-2236(00)01922-6. p g Nambu, A., Tachibana, Y., 2014. Mechanism of parkinsonian neuronal oscillations in the primate basal ganglia: some considerations based on our recent work. Front. Syst. Neurosci. 8. https://doi.org/10.3389/fnsys.2014.00074. K€atzel, D., Zemelman, B.V., Buetfering, C., W€olfel, M., Miesenb€ock, G., 2011. The columnar and laminar organization of inhibitory connections to neocortical excitatory cells. Nat. Neurosci. 14 (1), 100–107. https://doi.org/10.1038/nn.2687. g y Nevado-Holgado, A.J., Mallet, N., Magill, P.J., Bogacz, R., 2014. Effective connectivity of the subthalamic nucleus-globus pallidus network during Parkinsonian oscillations: effective connectivity of subthalamic nucleus-globus pallidus network. J. Physiol. 592 (7), 1429–1455. https://doi.org/10.1113/jphysiol.2013.259721. Kempf, F., Brücke, C., Salih, F., Trottenberg, T., Kupsch, A., Schneider, G.-H., et al., 2009. Gamma activity and reactivity in human thalamic local field potentials. Eur. J. Neurosci. 29 (5), 943–953. https://doi.org/10.1111/j.1460-9568.2009.06655.x. (7), 1429–1455. https://doi.org/10.1113/jphysiol.2013.259721. ( ), p g jp y Pfurtscheller, G., Lopes da Silva, F.H., 1999. Event-related EEG/MEG synchronization and desynchronization: basic principles. Clin. Neurophysiol. 110 (11), 1842–1857. Kobayashi, M., Pascual-Leone, A., 2003. Transcranial magnetic stimulation in neurology. Lancet Neurol. 2 (3), 145–156. https://doi.org/10.1016/S1474-4422(03)00321-1. Pfurtscheller, G., Lopes da Silva, F.H., 1999. Event-related EEG/MEG synchronization and desynchronization: basic principles. Clin. Neurophysiol. 110 (11), 1842–1857. https://doi.org/10.1016/S1388-2457(99)00141-8. Kuhn, A.A., Kempf, F., Brucke, C., Gaynor Doyle, L., Martinez-Torres, I., Pogosyan, A., et al., 2008. References High-frequency stimulation of the subthalamic nucleus suppresses oscillatory activity in patients with Parkinson's disease in parallel with improvement in motor performance. J. Neurosci. 28 (24), 6165–6173. https://doi.org/10.1523/ JNEUROSCI.0282-08.2008. Priori, A., Foffani, G., Pesenti, A., Tamma, F., Bianchi, A., Pellegrini, M., et al., 2004. Rhythm-specific pharmacological modulation of subthalamic activity in Parkinson's disease. Exp. Neurol. 189 (2), 369–379. https://doi.org/10.1016/j.expneurol.2004.0 6.001. Rosa, M., Arlotti, M., Ardolino, G., Cogiamanian, F., Marceglia, S., Di Fonzo, A., et al., 2015. Adaptive deep brain stimulation in a freely moving parkinsonian patient. Mov. Disord. 30 (7), 1003–1005. https://doi.org/10.1002/mds.26241. Kuramoto, E., Fujiyama, F., Nakamura, K.C., Tanaka, Y., Hioki, H., Kaneko, T., 2011. Complementary distribution of glutamatergic cerebellar and GABAergic basal ganglia afferents to the rat motor thalamic nuclei: cerebellar and basal ganglia afferents to thalamus. Eur. J. Neurosci. 33 (1), 95–109. https://doi.org/10.1111/j.1460-9568. 2010.07481.x. Salinas, E., Sejnowski, T.J., 2001. Correlated neuronal activity and the flow of neural information. Nat. Rev. Neurosci. 2 (8), 539–550. https://doi.org/10.1038/3508 6012. Kuramoto, E., Ohno, S., Furuta, T., Unzai, T., Tanaka, Y.R., Hioki, H., Kaneko, T., 2015. Ventral medial nucleus neurons send thalamocortical afferents more widely and more preferentially to layer 1 than neurons of the ventral anterior–ventral lateral nuclear complex in the rat. Cerebr. Cortex 25 (1), 221–235. https://doi.org/10.1093/cercor/ bht216. Sharott, A., Magill, P.J., Harnack, D., Kupsch, A., Meissner, W., Brown, P., 2005. Dopamine depletion increases the power and coherence of β-oscillations in the cerebral cortex and subthalamic nucleus of the awake rat. Eur. J. Neurosci. 21 (5 1413–1422. https://doi.org/10.1111/j.1460-9568.2005.03973.x. Leblois, A., 2006. Competition between feedback loops underlies normal and pathological dynamics in the basal ganglia. J. Neurosci. 26 (13), 3567–3583. https://doi.org/1 0.1523/JNEUROSCI.5050-05.2006. Sharott, A., Vinciati, F., Nakamura, K.C., Magill, P.J., 2017. A population of indirect pathway striatal projection neurons is selectively entrained to parkinsonian beta oscillations. J. Neurosci. 37 (41), 9977–9998. https://doi.org/10.1523/JNE UROSCI.0658-17.2017. Leventhal, D.K., Gage, G.J., Schmidt, R., Pettibone, J.R., Case, A.C., Berke, J.D., 2012. Basal ganglia beta oscillations accompany cue utilization. Neuron 73 (3), 523–536. https://doi.org/10.1016/j.neuron.2011.11.032. Shepherd, G.M., Grillner, S., 2010. Handbook of Brain Microcircuits. Oxford University Press, New York. Levy, R., Ashby, P., Hutchison, W.D., Lang, A.E., Lozano, A.M., Dostrovsky, J.O., 2002. Dependence of subthalamic nucleus oscillations on movement and dopamine in Parkinson's disease. Brain 125 (6), 1196–1209. https://doi.org/10.1093/brain/awf1 28. Sherman, M.A., Lee, S., Law, R., Haegens, S., Thorn, C.A., H€am€al€ainen, M.S., et al., 2016. References Neural mechanisms of transient neocortical beta rhythms: converging evidence from humans, computational modeling, monkeys, and mice. Proc. Natl. Acad. Sci. Unit. States Am. 113 (33), E4885–E4894. https://doi.org/10.1073/pnas.1604135113. Little, S., Pogosyan, A., Kuhn, A.A., Brown, P., 2012. Beta band stability over time correlates with Parkinsonian rigidity and bradykinesia. Exp. Neurol. 236 (2), 383–388. https://doi.org/10.1016/j.expneurol.2012.04.024. p g p Shu, Y., McCormick, D.A., 2002. Inhibitory interactions between ferret thalamic reticular neurons. J. Neurophysiol. 87 (5), 2571–2576. https://doi.org/10.1152/jn.00850.200 1. 383–388. https://doi.org/10.1016/j.expneurol.2012.04.024. Silberstein, P., Pogosyan, A., Kühn, A.A., Hotton, G., Tisch, S., Kupsch, A., et al., 2005. Cortico-cortical coupling in Parkinson's disease and its modulation by therapy. Brain 128 (6), 1277–1291. https://doi.org/10.1093/brain/awh480. Little, S., Pogosyan, A., Neal, S., Zavala, B., Zrinzo, L., Hariz, M., et al., 2013. Adaptive deep brain stimulation in advanced Parkinson disease: adaptive DBS in PD. Ann. Neurol. 74 (3), 449–457. https://doi.org/10.1002/ana.23951. Stephan, K.E., Penny, W.D., Moran, R.J., den Ouden, H.E.M., Daunizeau, J., Friston, K.J., 2010. Ten simple rules for dynamic causal modeling. Neuroimage 49 (4), 3099–3109. https://doi.org/10.1016/j.neuroimage.2009.11.015. Lopez-Azcarate, J., Tainta, M., Rodriguez-Oroz, M.C., Valencia, M., Gonzalez, R., Guridi, J., et al., 2010. Coupling between beta and high-frequency activity in the human subthalamic nucleus may Be a pathophysiological mechanism in Parkinson's disease. J. Neurosci. 30 (19), 6667–6677. https://doi.org/10.1523/JNEUROSCI.545 9-09.2010. Terman, D., Rubin, J.E., Yew, A.C., Wilson, C.J., 2002. Activity patterns in a model for the subthalamopallidal network of the basal ganglia. J. Neurosci. 22 (7), 2963–2976. Mallet, N., Pogosyan, A., Marton, L.F., Bolam, J.P., Brown, P., Magill, P.J., 2008a. Parkinsonian beta oscillations in the external globus pallidus and their relationship with subthalamic nucleus activity. J. Neurosci. 28 (52), 14245–14258. https:// doi.org/10.1523/JNEUROSCI.4199-08.2008. Tinkhauser, G., Pogosyan, A., Little, S., Beudel, M., Herz, D.M., Tan, H., Brown, P., 2017. The modulatory effect of adaptive deep brain stimulation on beta bursts in Parkinson's disease. Brain 140 (4), 1053–1067. https://doi.org/10.1093/brain/a wx010. Tsang, E.W., Hamani, C., Moro, E., Mazzella, F., Lozano, A.M., Hodaie, M., et al., 2012. Movement related potentials and oscillatory activities in the human internal globus pallidus during voluntary movements. J. Neurol. Neurosurg. Psychiatry 83 (1), 91–97. https://doi.org/10.1136/jnnp.2011.243857. Mallet, N., Pogosyan, A., Sharott, A., Csicsvari, J., Bolam, J.P., Brown, P., Magill, P.J., 2008b. Disrupted dopamine transmission and the emergence of exaggerated beta oscillations in subthalamic nucleus and cerebral cortex. J. Neurosci. 28 (18), 4795–4806. https://doi.org/10.1523/JNEUROSCI.0123-08.2008. p g j p van Wijk, B.C.M., Cagnan, H., Litvak, V., Kühn, A.A., Friston, K.J., 2018. References Bergman, H., Wichmann, T., Karmon, B., DeLong, M.R., 1994. The primate subthalamic nucleus. II. Neuronal activity in the MPTP model of parkinsonism. J. Neurophysiol. 72 (2), 507–520. https://doi.org/10.1152/jn.1994.72.2.507. Hara, K., Harris, R.A., 2002. The anesthetic mechanism of urethane: the effects on neurotransmitter-gated ion channels. Anesth. Analg. 6. Bevan, M.D., Magill, P.J., Terman, D., Bolam, J.P., Wilson, C.J., 2002. Move to the Rhythm: Oscillations in the Subthalamic Nucleus–External Globus Pallidus Network, vol. 7. Harris, R.M., 1987. Axon collaterals in the thalamic reticular nucleus from thalamocortical neurons of the rat ventrobasal thalamus. J. Comp. Neurol. 258 (3), 397–406. https://doi.org/10.1002/cne.902580308. Bhatt, M.B., Bowen, S., Rossiter, H.E., Dupont-Hadwen, J., Moran, R.J., Friston, K.J., Ward, N.S., 2016. Computational modelling of movement-related beta-oscillatory dynamics in human motor cortex. Neuroimage 133, 224–232. https://doi.org/10.10 16/j.neuroimage.2016.02.078. Heimer, G., Rivlin-Etzion, M., Bar-Gad, I., Goldberg, J.A., Haber, S.N., Bergman, H., 2006. Dopamine replacement therapy does not restore the full spectrum of normal pallidal activity in the 1-methyl-4-phenyl-1,2,3,6-tetra-hydropyridine primate model of parkinsonism. J. Neurosci. 26 (31), 8101–8114. https://doi.org/10.1523/JNE UROSCI.5140-05.2006. Bourassa, J., Pinault, D., Desch^enes, M., 1995. Corticothalamic projections from the cortical barrel field to the somatosensory thalamus in rats: a single-fibre study using biocytin as an anterograde tracer. Eur. J. Neurosci. 7 (1), 19–30. https://doi.org/1 0.1111/j.1460-9568.1995.tb01016.x. Herrmann, C.S., Rach, S., Neuling, T., Strüber, D., 2013. Transcranial alternating current stimulation: a review of the underlying mechanisms and modulation of cognitive processes. Front. Hum. Neurosci. 7. https://doi.org/10.3389/fnhum.2013.00279. j Brazhnik, E., McCoy, A.J., Novikov, N., Hatch, C.E., Walters, J.R., 2016. Ventral medial thalamic nucleus promotes synchronization of increased high beta oscillatory activity 112 NeuroImage 193 (2019) 103–114 C. Reis et al. Holgado, A.J.N., Terry, J.R., Bogacz, R., 2010. Conditions for the generation of beta oscillations in the subthalamic nucleus-globus pallidus network. J. Neurosci. 30 (37), 12340–12352. https://doi.org/10.1523/JNEUROSCI.0817-10.2010. Moran, R.J., Stephan, K.E., Kiebel, S.J., Rombach, N., O'Connor, W.T., Murphy, K.J., et al., 2008. Bayesian estimation of synaptic physiology from the spectral responses of neural masses. Neuroimage 42 (1), 272–284. https://doi.org/10.1016/j.neuroimage. 2008.01.025. g Hooks, B.M., Mao, T., Gutnisky, D.A., Yamawaki, N., Svoboda, K., Shepherd, G.M.G., 2013. Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex. J. Neurosci. 33 (2), 748–760. https://doi.org/10.1523/JNE UROSCI.4338-12.2013. Moran, R.J., Stephan, K.E., Seidenbecher, T., Pape, H.-C., Dolan, R.J., Friston, K.J., 2009. Dynamic causal models of steady-state responses. Neuroimage 44 (3), 796–811. https://doi.org/10.1016/j.neuroimage.2008.09.048. Moran, R.J., Pinotsis, D.A., Friston, K., 2013. Neural masses and fields in dynamic causal modeling. Front. Comput. p g Yamawaki, N., Shepherd, G.M.G., 2015. Synaptic circuit organization of motor corticothalamic neurons. J. Neurosci. 35 (5), 2293–2307. https://doi.org/10.1523/ JNEUROSCI.4023-14.2015. Yoshimura, Y., Callaway, E.M., 2005. Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat. Neurosci. 8 (11), 1552–1559. https://doi org/10 1038/nn1565 p g Zaepffel, M., Trachel, R., Kilavik, B.E., Brochier, T., 2013. Modulations of EEG beta power during planning and execution of grasping movements. PLoS One 8 (3) e60060. https ://doi.org/10.1371/journal.pone.0060060. References Generic Dynamic Causal Modelling: an Illustrative Application to Parkinson's Disease. NeuroImage. https://doi.org/10.1016/j.neuroimage.2018.08.039. Marreiros, A.C., Cagnan, H., Moran, R.J., Friston, K.J., Brown, P., 2013. Basal ganglia–cortical interactions in Parkinsonian patients. Neuroimage 66, 301–310. https://doi.org/10.1016/j.neuroimage.2012.10.088. g j g Weiler, N., Wood, L., Yu, J., Solla, S.A., Shepherd, G.M.G., 2008. Top-down laminar organization of the excitatory network in motor cortex. Nat. Neurosci. 11 (3), 360–366. https://doi.org/10.1038/nn2049. McCarthy, M.M., Moore-Kochlacs, C., Gu, X., Boyden, E.S., Han, X., Kopell, N., 2011. Striatal origin of the pathologic beta oscillations in Parkinson's disease. Proc. Natl. Acad. Sci. Unit. States Am. 108 (28), 11620–11625. https://doi.org/10.1 073/pnas.1107748108. Wise, S.P., Donoghue, J.P., 1986. The motor cortex of rodents Wise, S.P., Donoghue, J.P., 1986. The motor cortex of rodents. Cerebr. Cortex 5, 243–270. Moran, R.J., Kiebel, S.J., Stephan, K.E., Reilly, R.B., Daunizeau, J., Friston, K.J., 2007. A neural mass model of spectral responses in electrophysiology. Neuroimage 37 (3), 706–720. https://doi.org/10.1016/j.neuroimage.2007.05.032. Yamawaki, N., Stanford, I.M., Hall, S.D., Woodhall, G.L., 2008. Pharmacologically induced and stimulus evoked rhythmic neuronal oscillatory activity in the primary motor cortex in vitro. Neuroscience 151 (2), 386–395. https://doi.org/10.10 16/j.neuroscience.2007.10.021. Moran, R.J., Mallet, N., Litvak, V., Dolan, R.J., Magill, P.J., Friston, K.J., Brown, P., 2011. Alterations in brain connectivity underlying beta oscillations in parkinsonism. PLoS Comput. Biol. 7 (8) e1002124. https://doi.org/10.1371/journal.pcbi.1002124. 113 Yoshimura, Y., Callaway, E.M., 2005. Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat. Neurosci. 8 (11), 1552–1559. https://doi.org/10.1038/nn1565. Zaepffel, M., Trachel, R., Kilavik, B.E., Brochier, T., 2013. Modulations of EEG beta power during planning and execution of grasping movements. PLoS One 8 (3) e60060. https ://doi.org/10.1371/journal.pone.0060060. Yamawaki, N., Borges, K., Suter, B.A., Harris, K.D., Shepherd, G.M.G., 2014. A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity. ELife 3. https://doi.org/10.7554/eLife.05422. Yamawaki, N., Shepherd, G.M.G., 2015. Synaptic circuit organization of motor corticothalamic neurons. J. Neurosci. 35 (5), 2293–2307. https://doi.org/10.1523/ JNEUROSCI.4023-14.2015. Yoshimura, Y., Callaway, E.M., 2005. Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat. Neurosci. 8 (11), 1552–1559. https://doi.org/10.1038/nn1565. Zaepffel, M., Trachel, R., Kilavik, B.E., Brochier, T., 2013. Modulations of EEG beta power during planning and execution of grasping movements. PLoS One 8 (3) e60060. https ://doi.org/10.1371/journal.pone.0060060. C. Reis et al. NeuroImage 193 (2019) 103–114 C. Reis et al. NeuroImage 193 (2019) 103–114 Yoshimura, Y., Callaway, E.M., 2005. Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat. Neurosci. 8 (11), 1552–1559. https://doi.org/10.1038/nn1565. Yamawaki, N., Borges, K., Suter, B.A., Harris, K.D., Shepherd, G.M.G., 2014. A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity. ELife 3. https://doi.org/10.7554/eLife.05422. p g Yamawaki, N., Shepherd, G.M.G., 2015. Synaptic circuit organization of motor corticothalamic neurons. J. Neurosci. 35 (5), 2293–2307. https://doi.org/10.1523/ JNEUROSCI.4023-14.2015. 114
https://openalex.org/W2029112298
https://europepmc.org/articles/pmc549399?pdf=render
English
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A novel method for accurate operon predictions in all sequenced prokaryotes
Nucleic acids research
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cc-by
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ABSTRACT genomes is particularly important because it provides the most confident predictions that two genes are co-regulated and because other computational analyses, such as prediction of cis-regulatory elements, often rely on operon predictions. We combine comparative genomic measures and the distance separating adjacent genes to predict operons in 124 completely sequenced prokaryotic genomes. Our method automatically tailors itself to each genome using sequence information alone, and thus can be applied to any prokaryote. For Escherichia coli K12 and Bacillus subtilis, our method is 85 and 83% accurate, respectively, which is similar to the accuracy of methods that use the same features but are trained on experimentally characterized tran- scripts. In Halobacterium NRC-1 and in Helicobacter pylori, our method correctly infers that genes in oper- ons are separated by shorter distances than they are in E.coli, and its predictions using distance alone are more accurate than distance-only predictions trained on a database of E.coli transcripts. We use microarray data from six phylogenetically diverse prokaryotes to show that combining intergenic distance with com- parative genomic measures further improves accur- acy and that our method is broadly effective. Finally, we survey operon structure across 124 genomes, and find several surprises: H.pylori has many operons, contrary to previous reports; Bacillus anthracis has an unusual number of pseudogeneswithinconserved operons; and Synechocystis PCC 6803 has many operons even though it has unusually wide spacings between conserved adjacent genes. g y y p p Most previous efforts to predict operons focused on Escherichia coli and Bacillus subtilis, and relied on databases of experimentally identified transcripts for training and for validation (1–6). Unfortunately, databases of characterized transcripts are available for only a few organisms, making it difficult to judge the accuracy of current operon prediction methods on new genome sequences. Thus, unsupervised methods for operon prediction—methods that do not require large databases of known operons—are needed, along with new methods for validation of those predictions. We present a statistical framework for estimating the likeli- hood that two adjacent genes are contained within the same transcriptional unit (TU). Our method is based on genome sequences only, and is free from parameters optimized to repro- duce experimentally characterized operons. Nevertheless, our method’s predictions correspond well with databases of experi- mentally determined operons in E.coli and B.subtilis. ABSTRACT To show that our method is effective across the prokaryotes, we use the observation that genes in the same operon usually have similar expressionprofiles,whereasotheradjacentgenesdonot(3).We demonstrate qualitative agreement between our method’s pre- dictions and microarray data from six phylogenetically diverse prokaryotes, and introduce a procedure to estimate the quant- itative accuracy of operon predictions from microarray data. Two approaches have been previously proposed to predict operons in uncharacterized species. The first relies on identi- fying operons that are conserved in multiple species, as genes that remain adjacent across long stretches of evolutionary time are likely to be in the same operon (7). This method allows highly confident prediction of many operons, but the majority of the operons in E.coli cannot be predicted this way (7). We suspect that this is because many operons are evolutionarily new [(8); M. N. Price, K. H. Huang, E. J. Alm and A. P. Arkin, manuscript submitted] and neutral conservation of gene order within the closely related genomes that do contain these new 880–892 Nucleic Acids Research, 2005, Vol. 33, No. 3 doi:10.1093/nar/gki232 880–892 Nucleic Acids Research, 2005, Vol. 33, No. 3 doi:10.1093/nar/gki232 A novel method for accurate operon predictions in all sequenced prokaryotes Morgan N. Price1, Katherine H. Huang1, Eric J. Alm1,* and Adam P. Arkin1,2,3 1Lawrence Berkeley National Lab, 1 Cyclotron Road, Mailstop 939R704, Berkeley, CA 94720, USA, 2Howard Hughes Medical Institute, Berkeley, CA, USA and 3Department of Bioengineering, University of California, Berkeley, USA Received September 14, 2004; Revised October 25, 2004; Accepted January 20, 2005 ª The Author 2005. Published by Oxford University Press. All rights reserved. The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oupjournals.org *To whom correspondence should be addressed. Tel: +1 510 843 1794; Fax: +1 510 486 6059; Email: ejalm@lbl.gov INTRODUCTION As the gap grows between the sequencing of complete micro- bial genomes and the characterization of transcriptional regu- lation in those organisms, automated methods for predicting regulatory interactions are becoming a high priority. Automated prediction of the operon structure in prokaryotic Nucleic Acids Research, 2005, Vol. 33, No. 3 88 881  functional similarity: whether their predicted functions are in the same category [from COG (13)] and  similarity of CAI: the similarity of their codon adaptation index (CAI), a measure of synonymous codon usage (14). operons makes it hard to distinguish new operons from non- operons by conserved gene order alone.  functional similarity: whether their predicted functions are in the same category [from COG (13)] and  functional similarity: whether their predicted functions are in the same category [from COG (13)] and  functional similarity: whether their predicted functions are in the same category [from COG (13)] and g y [ ( )]  similarity of CAI: the similarity of their codon adaptation index (CAI), a measure of synonymous codon usage (14). g y  similarity of CAI: the similarity of their codon adaptation index (CAI), a measure of synonymous codon usage (14). p y g The second method relies on the fact that genes in the same operon tend to be separated by fewer base pairs of DNA. In E.coli and B.subtilis, this tendency can be quantified from known transcripts to give the probability that two adjacent genes are on the same operon as a function of their intergenic distance. It has been proposed that these probabilistic ‘distance models’ can be transferred from one species to another unre- lated species, but this ad hoc approach has only been validated for E.coli and B.subtilis (9). A subsequent study indicated that, in general, intergenic distances within conserved operons vary across species (10). Thus, E.coli’s distance model may not always be effective—indeed, we use microarray data to show that it is less effective for Halobacterium NRC-1 or for Helicobacter pylori. Both distances between genes and comparative features have previously been used in unsupervised operon predictions and are the most informative features for predicting operons (1,7,9). To increase the sensitivity of the comparative approach, we computed separate features for the closely related and distantly related genomes (see Methods). INTRODUCTION We used features that reflect similarity of function and similarity of codon usage because such features have been reported to improve prediction accuracy in E.coli (1,2,5). Statistical inference The key challenge for an unsupervised approach is to estimate, from sequence alone, the probability that two adjacent genes are in the same operon given the values of the features. We first infer the distribution of the comparative and functional fea- tures for operon and not-operon pairs by using the assumption described above, as shown in Figure 1. The observed dis- tribution of values for same-strand pairs is a mixture of the distribution for operon pairs, which is unknown, and for not-operon pairs, which by assumption is approximated by the observed distribution for opposite-strand pairs. If we know the relative fraction of operon and not-operon pairs in the same-strand set, then we can estimate the unknown dis- tribution P(Value|Operon) for operon pairs by ‘subtracting’ out the contribution from not-operon pairs. This proportion of operon pairs in the same-strand set [P(Operon|Same)] can be estimated from the number of runs of same-strand pairs in the genome (7,15). In the Methods, we extend this approach to estimate P(Operon|Same) to genomes with coding strand bias. Principles Not Same Same Operon (inferred) Value of comparative or functional feature Value of comparative or functional feature Principles The key elements of our approach are (i) to use both compar- ative and distance information and (ii) to infer a genome- specific distance model from preliminary comparative-only predictions. The method relies on a key assumption that the greater conservation of adjacency for genes on the same strand of DNA, compared to opposite-strand pairs, is entirely due to operons. This assumption has been previously used to identify conserved operons (7). In practice, this assumption implies that most adjacent pairs that are conserved across significant evolu- tionary distances (e.g. across the g-proteobacteria) are operon pairs, with a probability increasing with the extent of conser- vation. Although in some cases, pairs which are clearly not in operons (opposite-strand pairs) are conserved across significant evolutionary distances (11,12), we do not know of any process that would produce conserved not-operon (same-strand) pairs but not conserved opposite-strand pairs. We also make the analogous assumption for the greater functional relatedness of same-strand versus opposing-strand pairs. In the Results, we validate the combined assumption directly by analyzing known transcripts in E.coli and B.subtilis. We do not make any assumption about the intergenic distances between genes on the same or different strands, because there are biological reasons for these to be different for convergent, divergent and not-operon (same-strand) gene pairs (10). Inferring P(Value | Operon) Value of comparative or functional feature Frequency Not Same Same Operon (inferred) Figure 1. Building a model of operons without training data. Above, we show the three types of pairs of adjacent genes and the key assumption. Below, we use this assumption to infer P(Value|Operon), the distribution of a comparative or functional feature for operon pairs, from the observed distributions P(Value|Same) and P(Value|NotSame). The graph is purely schematic. Inferring P(Value | Operon) Value of comparative or functional feature Frequency Not Same Same Operon (inferred) Inferring P(Value | Operon) As with most previous approaches to operon prediction, we focus on pairs of adjacent genes, and estimate the probability that each pair isinthesame operon.We donot attempt topredict alternative transcripts due to internal promoters, terminator read-through, etc. as this remains a challenging problem even in E.coli, where transcriptional control features are relatively well characterized (4). Instead, we define two adjacent genes to be on the same operon if a transcript that contains both genes exists, even if alternative transcripts exist that contain only one of the two genes. Data sources We then produce a genome-specific distance model from these likelihood ratios. This follows the same approach of con- sidering distributions as mixtures, but is slightly more complic- ated because we do not have a ‘true negative’ set of gene pairs to train from (we consider only distances between genes on the same strand). Instead, we split the pairs into those with high and low comparative/functional likelihood ratios, and treat these as preliminary operonpredictions.By once againinvoking thekey assumption that not-operon pairs resemble opposite-strand pairs with respect to the comparative/functional features, we estimate that the false positive error rate of these predictions equals the fraction of opposite-strand gene pairs ‘predicted’ to be on the same operon. We make these predictions for the opposite-strand pairs, even though we already know that they can never be co-transcribed, only so that we can estimate the false positive error rate P(NotOperon|High). Thus, we have Sequences. We downloaded the complete annotated genomes of 124 prokaryotes from NCBI complete microbial genomes (http://www.ncbi.nlm.nih.gov/genomes/MICROBES/Complete. html), The Institute for Genomic Research (http://www.tigr.org) and DOE’s Joint Genome Institute (http://www.jgi.doe.gov/), and excluded plasmids and non-protein-coding genes from our analyses. Microarrays. We obtained data for E.coli, B.subtilis, and H.pylori from the Stanford Microarray Database [74, 78 and 31 arrays, respectively, from http://genome-www.stanford. edu/microarray, (16)], for Synechocystis from the Kyoto Encyclopedia of Genes and Genomes (49 arrays from http://www.genome.ad.jp/kegg/expression/), for Chlamydia trachomatis from T. Nicholson and R. Stephens (12 experi- ments times 2–3 replicates), and for Halobacterium from R. Bonneau and N. Baliga (44 arrays). P HighjNotOperon ð Þ  P HighjNotSame ð Þ‚ P HighjNotOperon ð Þ  P HighjNotSame ð Þ‚ 3 3 which can be derived from our assumption 2 METHODS by treating P(Values|Same) as a mixture of P(Values|Operon) and P(Values|NotOperon). Features For each pair of adjacent genes on the same strand, we consider: Figure 1. Building a model of operons without training data. Above, we show the three types of pairs of adjacent genes and the key assumption. Below, we use this assumption to infer P(Value|Operon), the distribution of a comparative or functional feature for operon pairs, from the observed distributions P(Value|Same) and P(Value|NotSame). The graph is purely schematic. Figure 1. Building a model of operons without training data. Above, we show the three types of pairs of adjacent genes and the key assumption. Below, we use this assumption to infer P(Value|Operon), the distribution of a comparative or functional feature for operon pairs, from the observed distributions P(Value|Same) and P(Value|NotSame). The graph is purely schematic.  distance: the number of base pairs separating the two genes,  comparative features: how often their orthologs are near each other (within 5 kb) in other genomes, 882 Nucleic Acids Research, 2005, Vol. 33, No. 3 error estimation step. Finally, we multiply the likelihood ratios for all the features with the a priori likelihood ratio to give the overall prediction: To perform the ‘subtraction,’ we use likelihood ratios rather than probabilities. Specifically, we estimate the likelihood ratio P(Same|Values)/P(NotSame|Values), where ‘Values’ refers to the comparative/functional features and ‘Same’ refers to same-strand versus opposing-strand pairs, from the observed distributions (see Methods). We then use the follow- ing formula: P OperonjAllFeatures ð Þ P NotOperonjAllFeatures ð Þ ¼ P OperonjSame ð Þ P NotOperonjSame ð Þ  P ValuesjOperon ð Þ P ValuesjNotOperon ð Þ  P DistancejOperon ð Þ P DistancejNotOperon ð Þ  P CAIjOperon ð Þ P CAIjNotOperon ð Þ 6 P NotOperonjAllFeatures ð Þ ¼ P OperonjSame ð Þ P NotOperonjSame ð Þ  P ValuesjOperon ð Þ P ValuesjNotOperon ð Þ  P DistancejOperon ð Þ P DistancejNotOperon ð Þ  P CAIjOperon ð Þ P CAIjNotOperon ð Þ P ValuesjOperon ð Þ P ValuesjNotOperon ð Þ  P NotSame ð Þ P Same ð Þ  P SamejValues ð Þ P NotSamejValues ð Þ P NotOperonjSame ð Þ P OperonjSame ð Þ ‚ 1 6 This ‘naive Bayes’ approach makes the assumption that dis- tance, the comparative/functional features and the similarity of CAI are conditionally independent, which is approximately true (data not shown). Features This ‘naive Bayes’ approach makes the assumption that dis- tance, the comparative/functional features and the similarity of CAI are conditionally independent, which is approximately true (data not shown). Combining the comparative log-likelihood ratios To combine the comparative/functional log-likelihood ratios— from three raw ‘gene neighbor’ scores and the COG similarity score—into a combined log likelihood ln[P(Values|Same)/ P(Values|NotSame)], we did not use the naive Bayesian method. These variables are not conditionally independent, so multiplying likelihood ratios or, equivalently, summing log-likelihood ratios, would overstate the confidence of pre- dictions. Instead, we found the best-fitting linear combination of log-likelihood ratios using logistic regression (glm in the R statistics package, http://www.r-project.org/). All four features contained statistically significant additional information for discriminating same-strand from opposing-strand pairs in the majority of genomes (generalized ANOVA, data not shown). Estimating likelihood ratios We begin with values for a feature d, such as the distance between two genes, for each pair. The values are split into two sets, such as the same-strand pairs with high and low comparative/functional likelihood ratios. When inferring the genome-specific distance models, we also have error rates in the training data, P(NotOperon|High) and P(Operon|Low). We wish to estimate the likelihood ratio P(d|Operon)/ P(d|NotOperon), which corresponds to the probability pd ” P djOperon ð Þ P djOperon ð Þ þ P djNotOperon ð Þ 7 7 P Highjd ð Þ P Lowjd ð Þ To determine COG function codes, we assigned genes to COGs (13) via reverse position-specific BLAST (18) against CDD (19), or by using COG membership from NCBI. Pairs of genes were assigned to three categories: matching, not matching, or one or both genes are uncharacterized (function codes ‘R’ or ‘S,’ or not in COG). 11 where P(High) and P(Low) can be estimated from the observed proportions over the entire data set. We used similarity of CAI, a measure of synonymous codon usage (14), instead of a related feature proposed by (5) because similarity of CAI shows better agreement with operons in E.coli and B.subtilis (data not shown). The reference set for CAI in each genome was identified by choosing the most 100 biased genes with at least 300 amino acids among a set of 500 COGs which show bias across many genomes. Our similarity measure was defined as sCAI = [(rank(CAI1)  mean(rank)]  [rank(CAI2)  mean(rank)]  [(rank(CAI1)  rank(CAI2)]2. Both terms showed modest but statistically significant agree- ment with operons (data not shown). Because of our choice of prior, our maximum likelihood estimator is a generalization of pseudocounts, or adding counts to the observations to avoid overfitting. In the absence of errors, the maximum likelihood estimate with this prior is given by adding a total of two pseudocounts to each bin (20). Features We used ‘pseudo-log- likelihood’ scoring, so that the magnitudes of these two terms were the logarithms of the proportions of all opposing-strand pairs that were conserved within 5 kb or not, respectively. We computed a second feature from the distantly related genomes by summing, across clusters, the maximum term within each cluster (excluding the cluster containing the genome itself, and using only positive terms). We also computed the sum of terms, including penalties, over all genomes irregardless of clustering, giving a third comparative feature. if the pair was not within 5 kb. We used ‘pseudo-log- likelihood’ scoring, so that the magnitudes of these two terms were the logarithms of the proportions of all opposing-strand pairs that were conserved within 5 kb or not, respectively. We computed a second feature from the distantly related genomes by summing, across clusters, the maximum term within each cluster (excluding the cluster containing the genome itself, and using only positive terms). We also computed the sum of terms, including penalties, over all genomes irregardless of clustering, giving a third comparative feature. P Highjd ð Þ P Lowjd ð Þ ¼ P djHigh ð Þ P djLow ð Þ  P High ð Þ P Low ð Þ ¼ pd  P OperonjHigh ð Þ þ 1pd ð Þ  P NotOperonjHigh ð Þ pd  P OperonjLow ð Þ þ 1  pd ð Þ  P NotOperonjLow ð Þ  P High ð Þ P Low ð Þ ‚ 11 Features P NotOperonjHigh ð Þ  P HighjNotSame ð ÞP NotOperonjSame ð Þ P HighjSame ð Þ ‚ The comparative or ‘gene neighbor’ scores measure how often two genes are near each other across many genomes (11,17). We used putative orthologs from bidirectional best BLASTp hits with 75% coverage both ways, and asked how often the genes have orthologs that are within 5 kb (this cutoff was determined empirically). Previous workers discarded closely related genomes (10,17) or reduced sensitivity when they were present (7), as these genomes show conserved pairs of unre- lated genes because of insufficient evolutionary time to shuffle them apart. Instead, we computed separate scores for distantly and closely related genomes. To distinguish closely related genomes, we clustered all genomes by the extent of conserved gene order, placing in the same cluster any pair of genomes for which 5% or more of opposite-strand pairs were conserved within 5 kb. To get useful information from these closely related genomes, we introduced a penalty if both orthologs exist but are not within 5 kb. Specifically, for each same-strand pair, this ‘within-cluster’ score was the sum, across the closely related genomes that also contained orthologs for both genes, of a positive term if the pair was within 5 kb, or a negative term where ‘High’ refers to pairs with high comparative/functional like- lihood ratios, which are more likely to be in the same operon. The false negative error rate P(Operon|Low) can be derived from the number of ‘missing’ predictions: P OperonjSame ð Þ ¼ P OperonjHigh ð Þ  P HighjSame ð Þ 5 þ P OperonjLow ð Þ  P LowjSame ð Þ We estimate the likelihood ratio P(Distance|Operon)/ P(Distance|NotOperon) from these error rates and the observed distributions P(Distance|High) and P(Distance|Low) for the two sets of same-strand pairs (see Methods). At this point, we have likelihood ratios from the comparative/functional features and from the genome-specific distance model. We use these preliminary predictions to estimate likelihood ratios for the remaining feature, the similarity of CAI, but without the Nucleic Acids Research, 2005, Vol. 33, No. 3 8 883 where P(High|d ) is an unknown probability, not the observed proportion, and is related to pd by if the pair was not within 5 kb. a  P OperonjLagging1 ð Þ2b  P OperonjLagging1 ð Þ þ c ¼ 0 a  P OperonjLagging1 ð Þ2b  P OperonjLagging1 ð Þ þ c ¼ 0 a ¼ P Leading2jLeading1 ð Þ P Lagging2jLagging1 ð Þ b ¼ 2P Leading2jLeading1 ð Þ b ¼ 2P Leading2jLeading1 ð Þ c ¼ P Leading2jLeading1 ð Þ þ P Lagging2jLagging1 ð Þ1 12 c ¼ P Leading2jLeading1 ð Þ þ P Lagging2jLagging1 ð Þ1 12 We also tried a simpler approach based on the plausible but unsupported hypothesis that TUs assort to the leading and lagging strands independent of their length. Compared with this ‘strand-naı¨ve’ approach, the ‘strand-wise’ formula gave better prediction accuracy on known operons, better agree- ment with microarray data, and better agreement with an inde- pendent estimate of P(Operon|Same) based on E.coli distance models (9) (Supplementary Table 3). p g In addition, the not-operon set contains too many genes strongly predicted to occur in the same operon, particularly for B.subtilis. A previous investigation of conserved ‘known’ not-operon pairs in E.coli found evidence in the literature that many of them are in fact co-transcribed (7). In B.subtilis, we checked the 19 known not-operon pairs that we predicted to be >90% likely to fall in the same operon (based on the comparative and functional features) against TU diagrams and northern hybridizations at BSORF (http://bacillus. genome.ad.jp/bsorf.html). Northerns were only available for three pairs (sul/folA, mmgE/yqiQ and deoR/dra), but in all three cases, there was a transcript containing both genes that was not present in the original database. Furthermore, in both E.coli and B.subtilis, the conserved and/or functionally related not-operons (those with comparative/functional P(Operon) > 0.9) are significantly more co-expressed than other not-operon pairs (Figure 2C and D: both P < 0.01, Kolmogorov–Smirnov test). Based on these results, we con- clude that the modest deviations from the assumption are due to co-transcription of the ‘known’ not-operon pairs, perhaps reflecting alternative transcripts. In the next section, we demonstrate that the assumption ultimately leads to accurate operon predictions. Estimating accuracy from microarray data Given the ‘true positive’ and ‘true negative’ pairs described in the Results, as well as the predicted operon and not-operon pairs, we modeled these four distributions of microarray sim- ilarities with a Gaussian kernel. We then used linear regression on the densities to estimate the proportion of true operon pairs in each set of predictions. We also corrected for the expression levels of the different sets of genes—the high-confidence pre- dictions are more highly expressed and have higher microarray similarity than other operon pairs, probably due to reduced noise (data not shown). Specifically, we divided each distri- bution into four quartiles by their expression level and reweighed these fractions before the regression. To put con- fidence intervals around these estimates of accuracy, we used a jackknife approach: we reran the estimation procedure with individual conditions (manually identified groups of similar experiments, such as ‘heat shock’) removed from the data set. We multiplied the variance of these leave-1-out estimates by (m  1)  m/(m + 1), where m is the number of conditions, to account for the fact that the jackknife estimates are correlated as they mostly use the same data, and used a t-test to give 95% confidence intervals. Test of key assumption We tested the key assumption—that not-operon pairs and opposite-strand pairs will have the same distributions of values for the comparative and functional features—against data- bases of characterized transcripts for E.coli and B.subtilis (21,22). Specifically, we compared the preliminary compar- ative/functional predictions for ‘known’ not-operon pairs to the corresponding ‘predictions’ for opposite-strand pairs. We defined known not-operon pairs as those same-strand pairs Accuracy of operon predictions We tested the accuracy of our unsupervised method in three ways. First, for E.coli and B.subtilis, we compared our pre- dictions to known operons. We also compared the perform- ance of the unsupervised method to that of a similar supervised method that we optimized using the known operons. Second, we defined a procedure to estimate prediction accuracy from microarray expression data, and measured our performance this way across six phylogenetically diverse prokaryotes. Finally, we established that our internal confidence values approximate the observed accuracy of individual predictions and then used this internal estimate of accuracy as an indicator of performance in genomes for which no additional data is available to test against. Prior estimate of P(Operon|Same) which can be thought of as the probability of a pair separated by distance d being an operon pair if operons and not-operons were equally likely. The likelihood ratio is equal to pd/(1  pd). The proportion of same-strand pairs that are in operons can be estimated by observing the proportion of adjacent pairs of genes that are same-strand pairs (7,15). If independent tran- scripts are equally likely to occur on the same or different strands, then 1  P(Operon|Same)P(Same) = 2P(NotSame), which gives P(Operon|Same) = 2  1/P(Same). This method agrees with other estimates for E.coli, but is not accurate for genomes with an excess of genes on the leading strand of DNA replication (15). We first grouped the values into overlapping bins of 100– 200 items and estimated the likelihood ratio within each bin. We obtained a likelihood ratio for each specific value by interpolating and then smoothing (via local regression). We used ranks rather than raw values. To estimate likelihood ratios within each bin, we used a maximum likelihood approach. We solved numerically for the pd that maximized the joint probability of pd and the data—the counts of high and low pairs within bin d (nHd and nLd, respect- ively)—given a prior distribution p(pd): To account for these strand biased genomes, such as B.subtilis, we use our rather surprising observation that adjacent pairs of genes on either the leading or lagging strand of DNA are equally likely to be co-transcribed in an operon (M. N. Price, E. J. Alm and A. P. Arkin, manuscript submit- ted). Based on this observation, we assume that P(Operon| Leading1,Leading2) = P(Operon|Lagging1,Lagging2), where ‘1’ refers to a first gene that might be in the same operon or on the same strand as the next gene downstream (‘2’). 8 P nHd‚nLd‚pd ð Þ ¼ P nHd‚nLdjpd ð Þ  p pd ð Þ‚ P nHd‚nLDjpd ð Þ  P Highjd ð ÞnHd  P Lowjd ð ÞnLd‚ 10 p pd ð Þ ” pd  1  pd ð Þ‚ Nucleic Acids Research, 2005, Vol. 33, No. 3 884 From this we derive: From this we derive: that straddle the boundaries of a known TU and are not in any known alternative transcript [following (1)]. As shown in Figure 2A and B, the distribution for the known not- operon pairs is similar to that for opposite-strand pairs in both organisms. Prior estimate of P(Operon|Same) P OperonjSame ð Þ ¼ P OperonjLagging1 ð Þ P Lagging2jLagging1 ð Þ ¼ P OperonjLeading1 ð Þ P Leading2jLeading1 ð Þ g Interestingly, in B.subtilis, some of the not-operon pairs have unusually low probabilities of being in an operon, high- lighting a potential caveat of using these primarily literature- culled databases: there is a predominance of highly conserved genes (present in many other genomes) in this small data set. Because the comparative/functional predictions will only con- clude that two genes are very unlikely to be in the same operon if both genes are conserved but present in different regions of the genome in several other genomes, genes that are conserved in more genomes will tend to be more confidently predicted to fall in different operons (e.g. the peak at 0.25 for known not-operons in Figure 2B). Accuracy against known transcripts The simplest metrics to describe the effectiveness of an operon prediction method are sensitivity—the proportion of true operon pairs that are correctly predicted—and specificity—the Nucleic Acids Research, 2005, Vol. 33, No. 3 885 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 A. Preliminary P(Operon), E. coli Comparative/Functional P(Operon) Proportion Non–operons Opposite–strand 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 B. Preliminary P(Operon), B. subtilis Comparative/Functional P(Operon) Proportion Non–operons Opposite–strand –1.0 –0.5 0.0 0.5 1.0 0.0 0.2 0.4 0.6 0.8 1.0 C. Microarrays, E. coli Similarity of Expression Patterns (Pearson r) Proportion Operons Non–operons, P>0.9 Non–operons, P<0.9 –1.0 – 0.5 0.0 0.5 1.0 0.0 0.2 0.4 0.6 0.8 1.0 D. Microarrays, B. subtilis Similarity of Expression Patterns (Pearson r) Proportion Operons Non–operons, P>0.9 Non–operons, P<0.9 nservationand co-expressionof ‘known’not-operonpairs. (A and B)The distributionof preliminaryestimatesof P(Operon),usingonlythe comparative al features, for opposite-strand pairs and ‘known’ not-operon pairs in (A) E.coli K12 and (B) B.subtilis. (C and D) The distribution of microarray earson correlation, x axis) for known operon pairs, for known not-operon pairs strongly predicted to be in an operon by the comparative/function features > 0.9], and for other known not-operon pairs, in (C) E.coli and (D) B.subtilis. 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 B. Preliminary P(Operon), B. subtilis Comparative/Functional P(Operon) Proportion Non–operons Opposite–strand 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 A. Preliminary P(Operon), E. coli Comparative/Functional P(Operon) Proportion Non–operons Opposite–strand B. Preliminary P(Operon), B. subtilis A. Preliminary P(Operon), E. coli Proportion Comparative/Functional P(Operon) Comparative/Functional P(Operon) –1.0 –0.5 0.0 0.5 1.0 0.0 0.2 0.4 0.6 0.8 1.0 C. Microarrays, E. coli Similarity of Expression Patterns (Pearson r) Proportion Operons Non–operons, P>0.9 Non–operons, P<0.9 –1.0 – 0.5 0.0 0.5 1.0 0.0 0.2 0.4 0.6 0.8 1.0 D. Microarrays, B. subtilis Similarity of Expression Patterns (Pearson r) Proportion Operons Non–operons, P>0.9 Non–operons, P<0.9 C. Microarrays, E. coli D. Microarrays, B. subtilis Proportion Figure 2. Conservationand co-expressionof ‘known’not-operonpairs. (A and B)The distributionof preliminaryestimatesof P(Operon),usingonlythe comparative and functional features, for opposite-strand pairs and ‘known’ not-operon pairs in (A) E.coli K12 and (B) B.subtilis. (C and D) The distribution of microarray similarity (Pearson correlation, x axis) for known operon pairs, for known not-operon pairs strongly predicted to be in an operon by the comparative/function features [P(Operon) > 0.9], and for other known not-operon pairs, in (C) E.coli and (D) B.subtilis. predictions. Accuracy against known transcripts In E.coli, the AOC is 0.920 for the unsupervised approach versus 0.919 for the supervised method, and in B.subtilis, the AOCs are 0.888 and 0.907, respectively. (To measure the accuracy of the supervised method, we used 100-fold cross-validation.) Furthermore, the distance models inferred by our unsupervised approach are similar to the supervised models in both organisms (Figure 3C and D). We also compared our unsupervised results to several previously published supervised methods, and found that its accuracy was comparable except when the supervised methods used significant additional information, such as microarray data (Supplementary Table 1). Overall, the unsupervised method is quite accurate at predicting known TU boundaries, even though known transcripts are not used to optimize any part of the method. proportion of true not-operon pairs that are correctly predicted. These metrics require binary predictions (a pair of genes is either in an operon or not); we used a threshold of P(Operon|AllFeatures) > 0.5, or more likely to be in an operon than not. Other thresholds can be used if higher sensitivity or specificity is preferred. With this threshold, the unsupervised method has sensitivity and specificity of 88.3 and 79.9%, respectively in E.coli and 90.9 and 71.0%, respectively in B.subtilis. For a threshold-independent measure of accuracy, we used the area under the receiver operating characteristic curve [AOC, (23)] shown in Figure 3A and B. AOC is equal to the probability that a randomly selected known operon pair will have a higher score than a randomly selected known not- operon pair. Thus, an AOC of 0.5 reflects an uninformative (random) predictor, and an AOC of 1.0 corresponds to perfect 886 Nucleic Acids Research, 2005, Vol. 33, No. 3 886 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 A. Accuracy (E. coli) False Positives (1–Specificity) True Positives (Sensitivity) Unsupervised distance only comparative/functional Supervised 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 B. Accuracy (B. subtilis) False Positives (1–Specificity) True Positives (Sensitivity) Unsupervised distance only comparative/functional Supervised –50 0 50 100 200 300 –3 –2 –1 0 1 2 3 C. Distance Model (E. coli) Intergenic Distance (bp) ln(likelihood ratio) Unsupervised Supervised –50 0 50 100 200 300 –3 –2 –1 0 1 2 3 D. Distance Model (B. subtilis) Intergenic Distance (bp) ln(likelihood ratio) Unsupervised Supervised Figure 3. Unsupervised predictions are accurate and similar to supervised predictions in E.coli K12 (left) and B.subtilis (right). Accuracy against known transcripts (A and B) Accuracy on known operon and not-operon pairs as the prediction threshold varies, also known as the Receiver Operating Characteristic (ROC) curve, for (A) E.coli and (B) B.subtilis. We show the ROC curves for unsupervised predictions using all features, for unsupervised predictions using only distance or only the comparative/functional features, and also for supervised predictions (using all features and 100-fold cross-validation). (C and D) Distance models, with intergenic distance in base pairs on the x-axis and log likelihood ratios fln[P(Operon|Distance)/P(NotOperon|Distance)]} on the y-axis, for (C) E.coli and (D) B.subtilis. A log likelihood ratio of zero (dashed line) indicates pairs that are equally likely to be in an operon or not. 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 A. Accuracy (E. coli) False Positives (1–Specificity) True Positives (Sensitivity) Unsupervised distance only comparative/functional Supervised 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 B. Accuracy (B. subtilis) False Positives (1–Specificity) True Positives (Sensitivity) Unsupervised distance only comparative/functional Supervised A. Accuracy (E. coli) B. Accuracy (B. subtilis) False Positives (1–Specificity) False Positives (1–Specificity) –50 0 50 100 200 300 –3 –2 –1 0 1 2 3 C. Distance Model (E. coli) Intergenic Distance (bp) ln(likelihood ratio) Unsupervised Supervised –50 0 50 100 200 300 –3 –2 –1 0 1 2 3 D. Distance Model (B. subtilis) Intergenic Distance (bp) ln(likelihood ratio) Unsupervised Supervised C. Distance Model (E. coli) D. Distance Model (B. subtilis) Figure 3. Unsupervised predictions are accurate and similar to supervised predictions in E.coli K12 (left) and B.subtilis (right). (A and B) Accuracy on known operon and not-operon pairs as the prediction threshold varies, also known as the Receiver Operating Characteristic (ROC) curve, for (A) E.coli and (B) B.subtilis. We show the ROC curves for unsupervised predictions using all features, for unsupervised predictions using only distance or only the comparative/functional features, and also for supervised predictions (using all features and 100-fold cross-validation). (C and D) Distance models, with intergenic distance in base pairs on the x-axis and log likelihood ratios fln[P(Operon|Distance)/P(NotOperon|Distance)]} on the y-axis, for (C) E.coli and (D) B.subtilis. A log likelihood ratio of zero (dashed line) indicates pairs that are equally likely to be in an operon or not. Accuracy against microarray data estimated probability P(Operon|AllFeatures) that the genes are in the same operon. To test operon predictions more broadly, we compared the unsupervised predictions to microarray data from six species. We found that the microarray data correlates with predictions and obtained quantitative estimates of prediction accuracy from the microarray data. To measure whether genes predicted to be in the same operon have similar expression patterns, we used a standard metric: the Pearson (linear) correlation between the normalized log-ratios of the two genes (r). We also used agreement with gene expression data to test whether the method was using informative features, and whether it was combining those features effectively. The dis- tance models are responsible for a majority of the agreement with microarrays, which strongly suggests that the method is predicting operons rather than identifying functionally related pairs of adjacent genes (Table 1). Combining comparative genomics with intergenic distance improves agreement greatly over using either measure alone (Table 1), and in five of the six species, the combined comparative/functional predictions out- perform the best single comparative feature (data not shown). In contrast, similarity of CAI has little effect on the final pre- dictions and does not give a consistent improvement (data not In all six species, predicted operon pairs are strongly co-expressed relative to other adjacent pairs on the same strand (Figure 4). Predicted not-operon pairs show little co-expression, similar to opposite-strand pairs, which were used as negative controls. Moreover, as shown in Figure 5A, the average strength of the correlations increases with the Nucleic Acids Research, 2005, Vol. 33, No. 3 887 he greater agreement with microarrays of distance and not operon pairs as mixtures of the distributi –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 E. coli K12 Microarray Similarity (Pearson r) Proportion Predicted Operons Predicted Non–Operons Opposite–Strand Pairs –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 B. Accuracy against microarray data subtilis Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Synechocystis PCC 6803 Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Halobacterium NRC–1 Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Chlamydia trachomatis Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Helicobacter pylori Microarray Similarity (Pearson r) Proportion supervised predictions agree with microarray data from six species. For each species, we show the distribution of microarray similari dicted operon pairs, for predicted not-operon pairs on the same strand, and for opposite-strand pairs. Predicted not-operon pairs s the opposite-strand pairs and are significantly less correlated than predicted operon pairs (P < 107 for all genomes, Kolmogorov–S 22–0.37). Nucleic Acids Research, 2005, Vol. 33, –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 E. coli K12 Microarray Similarity (Pearson r) Proportion Predicted Operons Predicted Non–Operons Opposite–Strand Pairs –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 B. subtilis Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 B. subtilis Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 E. coli K12 Microarray Similarity (Pearson r) Proportion Predicted Operons Predicted Non–Operons Opposite–Strand Pairs E. coli K12 0 0 5 0 0 0 5 0 Microarray Similarity (Pearson r) –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Halobacterium NRC–1 Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Synechocystis PCC 6803 Microarray Similarity (Pearson r) Proportion Synechocystis PCC 6803 Halobacterium NRC–1 Microarray Similarity (Pearson r) Microarray Similarity (Pearson r) –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Helicobacter pylori Microarray Similarity (Pearson r) Proportion –1.0 –0.5 0.0 0.5 1.0 0.0 0.1 0.2 0.3 0.4 0.5 Chlamydia trachomatis Microarray Similarity (Pearson r) Proportion Chlamydia trachomatis Helicobacter pylori Figure 4. Unsupervised predictions agree with microarray data from six species. For each species, we show the distribution of microarray similarity (Pearson r, x axes) for predicted operon pairs, for predicted not-operon pairs on the same strand, and for opposite-strand pairs. Accuracy against microarray data subtilis Observed P(Operon) E. coli B. subtilis Estimated P(Operon), unsupervised Estimated P(Operon), unsupervised Figure 5. P(Operon|AllFeatures) is consistent with known operons and with microarray data. (A) The smoothed average of the similarity of gene expression profiles (Pearson r) as a function of P(Operon|AllFeatures), computed by local regression (loess) on r versus rank[P(Operon|AllFeatures)]. (B) Accuracy of unsupervised estimates of P(Operon|AllFeatures) for known operons from E.coli and B.subtilis. For both genomes, we grouped the known operon or not-operon pairs together into 10 bins of equal size based on P(Operon|AllFeatures). For each bin, we show P(Operon|AllFeatures) versus the actual proportion of operon pairs, after correcting for the greater number of known operon pairs in the test set. The straight line shows ideal performance (x = y). Figure 5. P(Operon|AllFeatures) is consistent with known operons and with microarray data. (A) The smoothed average of the similarity of gene expression profiles (Pearson r) as a function of P(Operon|AllFeatures), computed by local regression (loess) on r versus rank[P(Operon|AllFeatures)]. (B) Accuracy of unsupervised estimates of P(Operon|AllFeatures) for known operons from E.coli and B.subtilis. For both genomes, we grouped the known operon or not-operon pairs together into 10 bins of equal size based on P(Operon|AllFeatures). For each bin, we show P(Operon|AllFeatures) versus the actual proportion of operon pairs, after correcting for the greater number of known operon pairs in the test set. The straight line shows ideal performance (x = y). Figure 5. P(Operon|AllFeatures) is consistent with known operons and with microarray data. (A) The smoothed average of the similarity of gene expression profiles (Pearson r) as a function of P(Operon|AllFeatures), computed by local regression (loess) on r versus rank[P(Operon|AllFeatures)]. (B) Accuracy of unsupervised estimates of P(Operon|AllFeatures) for known operons from E.coli and B.subtilis. For both genomes, we grouped the known operon or not-operon pairs together into 10 bins of equal size based on P(Operon|AllFeatures). For each bin, we show P(Operon|AllFeatures) versus the actual proportion of operon pairs, after correcting for the greater number of known operon pairs in the test set. The straight line shows ideal performance (x = y). Table 2. Accuracy against microarray data Estimates of prediction accuracy from the method itself agree with estimates from microarrays or from known operons Attribute E.coli B.subtilis C.trachomatis Synechocystis Percentage accuracy of predicted operon pairs From sequence 89.4 84.2 86.2 76.5 From microarrays 88.6 – 1.3 76.7 – 3.5 94.8 – 5.7 58.2 – 10.9 From known operons 85.4 77.0 Percentage accuracy of predicted not-operon pairs From sequence 85.4 83.5 82.4 70.3 From microarrays 85.7 – 2.3 80.6 – 1.1 91.6 – 14.0 86.5 – 7.1 From known operons 83.7 88.0 A priori % in operons [P(Operon|Same)] From sequence 57.0 51.7 59.7 48.5 From microarrays 56.0 – 1.6 49.7 – 2.1 59.9 – 9.7 32.1 – 5.6 Ranges are 95% confidence intervals. Table 2. Estimates of prediction accuracy from the method itself agree with estimates from microarrays or from known operons Table 1. The majority of the agreement between predictions and microarrays is due to the genome-specific distance models Table 1. The majority of the agreement between predictions and microarrays is due to the genome-specific distance models Genome Distance Comparative All features E. coli K12 0.406 0.401 0.494 B. subtilis 0.420 0.335 0.461 H. pylori 0.275 0.231 0.343 C. trachomatis 0.260 0.167 0.303 Synechocystis 0.159 0.222 0.268 Halobacterium 0.198 0.159 0.215 For each genome we show the Spearman correlation between the microarray similarity (the Pearson correlation of the normalized log-ratios for two adjacent genes) and the predicted probability that the two genes are in the same operon [P(Operon)] using just intergenic distance, using just the comparative/ functional features, or using all features. For each genome we show the Spearman correlation between the microarray similarity (the Pearson correlation of the normalized log-ratios for two adjacent genes) and the predicted probability that the two genes are in the same operon [P(Operon)] using just intergenic distance, using just the comparative/ functional features, or using all features. Ranges are 95% confidence intervals. separations and/or conserved gene order in distantly-related species, and display high specificity when compared with known operons in E.coli and B.subtilis (see Figure 5B). For further information about this accuracy estimation procedure, see Methods. Accuracy against microarray data Predicted not-operon pairs show a similar distribution as the opposite-strand pairs and are significantly less correlated than predicted operon pairs (P < 107 for all genomes, Kolmogorov–Smirnov test, D- statistic = 0.22–0.37). shown). The greater agreement with microarrays of distance- only predictions, relative to the comparative/functional predictions, is consistent with the hypothesis that many operons are too new to be identified by comparative genomics alone (8). and not-operon pairs as mixtures of the distributions for true positives and false positives. We approximated the latter with the observed distribution for opposite-strand pairs, following the assumption that not-operon pairs resemble opposite-strand pairs. To estimate the distribution for true positives, we used those gene pairs that were strongly predicted to be on the same operon [P(Operon|AllFeatures) > 0.95]. These genes comprise a set of high-quality predictions that have very low intergenic ( ) Finally, we used microarray data to estimate the absolute accuracy of the predictions. To do this, we modeled the observed distributions of correlations for predicted operon Nucleic Acids Research, 2005, Vol. 33, No. 3 888 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 A. P(Operon) vs. Microarrays Estimated P(Operon), unsupervised Average Microarray Similarity (Pearson r) E.coli B.subtilis H.pylori C.trachomatis Synechocystis Halobacterium 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 B. P(Operon) vs. Known Operons Estimated P(Operon), unsupervised Observed P(Operon) E. coli B. subtilis Figure 5. P(Operon|AllFeatures) is consistent with known operons and with microarray data. (A) The smoothed average of the similarity of gene expression pr (Pearson r) as a function of P(Operon|AllFeatures), computed by local regression (loess) on r versus rank[P(Operon|AllFeatures)]. (B) Accuracy of unsuper estimates of P(Operon|AllFeatures) for known operons from E.coli and B.subtilis. For both genomes, we grouped the known operon or not-operon pairs togethe 10 bins of equal size based on P(Operon|AllFeatures). For each bin, we show P(Operon|AllFeatures) versus the actual proportion of operon pairs, after correctin the greater number of known operon pairs in the test set. The straight line shows ideal performance (x = y). 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 A. P(Operon) vs. Microarrays Average Microarray Similarity (Pearson r) E.coli B.subtilis H.pylori C.trachomatis Synechocystis Halobacterium A. P(Operon) vs. Microarrays B. P(Operon) vs. Known Operons B. P(Operon) vs. Known Operons 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 Observed P(Operon) E. coli B. Accuracy in other genomes To test the predictions for 124 genomes, where neither data- bases of known transcripts nor microarray data are generally available, we used the P(Operon|AllFeatures) values them- selves as an internal estimate of prediction accuracy. Several lines of evidence suggest that these internal estimates may be a good indicator of performance. First, in all six species, the average microarray similarity (r) rises sharply as P(Operon|AllFeatures) approaches one, and falls to nearly zero as P(Operon|AllFeatures) approaches zero (Figure 5A). Second, unsupervised estimates of P(Operon|AllFeatures) agree with the accuracy of predictions for known operons in E.coli and B.subtilis (Figure 5B). Finally, as shown in the previous section, predicted accuracies are in quantitative agreement with estimates from gene expression data. The microarray-based estimates of accuracy are consistent with the accuracy expected from the predicted probabilities, and, in E.coli and B.subtilis, with the observed accuracy on known operons (Table 2). We observe good agreement for the larger data sets (E.coli, B.subtilis and Chlamydia trachomatis), while in H.pylori and Halobacterium NRC-1 there is insuffi- cient data for reliable estimates (data not shown). Although overall accuracy in Synechocystis PCC 6803 according to the microarrays is 72 – 5%, consistent with the method’s internal estimate of 73%, this reflects the combination of a high false positive rate and a low false negative rate, due to an overly high a priori estimate of P(Operon|Same). The unusual operon structure observed in Synechocystis is discussed in a later section. We calculated the estimated accuracy of the predictions in 124 genomes from the average over all pairs of each Nucleic Acids Research, 2005, Vol. 33, No. 3 889 –11 –4 –1 25 50 100 150 200 300 –4 –2 0 2 4 Intergenic Distance (d) ln(likelihood ratio) E.coli B.subtilis H.pylori C.trachomatis Synechocystis Halobacterium B.anthracis prediction’s confidence, which equals P(Operon|AllFeatures) for predicted operon pairs [those with P(Operon|AllFeatures) > 0.5] and 1  P(Operon|AllFeatures) for predicted not-operon pairs. These predicted accuracies range from 71 to 96%, with half of the genomes lying between 82 and 87%. Accuracy is independently correlated with the excess conservation of same-strand pairs and with the strength of the relationship between close spacing and conservation (Spearman r = 0.47 and 0.64, respectively; both P < 107). Operon structure across 124 genomes Having validated our predictions in a number of genomes, we investigated whether these predictions could highlight bio- logical differences among genomes when applied to a large set of diverse prokaryotes. We first turned to the genome-specific ‘distance models’, which are the estimates of log-likelihood ratios for operon and not-operon pairs given the intergenic distance between them fln[P(Distance|Operon)/P(Distance| NotOperon)]}. Most genome-specific distance models have the shape expected from E.coli and B.subtilis, but E.coli has particularly extreme values at very short and very high separations (Figure 6). E.coli may have an unusually strong correlation between intergenic distance and conserved prox- imity, or gene starts in other genomes may simply be less accurate [e.g. (9)]. Intergenic Distance (d) Figure 6. Unsupervised distance models across 124 genomes. We show boxplots, across 124 genomes, of the genome-specific log-likelihoods ln(P(Distance|Operon)/P(Distance|NotOperon)) at the indicated distances. Where the log likelihood is zero, operon and not-operon pairs are predicted to be equallylikelyto havethat distance.The boxesshow quartilesand medians, whiskers extend up to 1.5 times the interquartile range from the box, and dots show outlying genomes. The non-linear x-axis highlights the sharp peak around the common separations of 1 and 4. Distance models for a few specific genomes are shown with lines. Although most genomes follow the same trend of more operons at lower separations, significant differences are seen in the shape and magnitude of their distance models. Figure 6. Unsupervised distance models across 124 genomes. We show boxplots, across 124 genomes, of the genome-specific log-likelihoods ln(P(Distance|Operon)/P(Distance|NotOperon)) at the indicated distances. Where the log likelihood is zero, operon and not-operon pairs are predicted to be equallylikelyto havethat distance.The boxesshow quartilesand medians, whiskers extend up to 1.5 times the interquartile range from the box, and dots show outlying genomes. The non-linear x-axis highlights the sharp peak around the common separations of 1 and 4. Distance models for a few specific genomes are shown with lines. Although most genomes follow the same trend of more operons at lower separations, significant differences are seen in the shape and magnitude of their distance models. These variations in distance models support our motivation for developing an unsupervised method. To determine whether the observed differences among species reflect actual bio- logical variation, or are simply an artifact of our method, we examined two genomes with significant differences to the E.coli model for which we also had gene expression data: Halobacterium and H.pylori. difference in predictions). Distance models vary As shown in Figure 7, in E.coli, microarray similarity decays gradually with increasing distance, but both Halobacterium and H.pylori show sharp and significant drop-offs— Halobacterium around 20 bp and H.pylori around 50 bp— as predicted by the genome-specific distance models. These differences in the distance models arise from statistically significant differences in how likely these pairs at intermediate distances are to be conserved in a distant genome (Supple- mentary Table 2). Operon structure across 124 genomes The corresponding test in H.pylori gives 0.328 versus 0.307 (P = 0.008). For the four other gen- omes, the two levels of agreement are almost identical (data not shown; all P > 0.05). This latter result explains why a previous study focusing only on E.coli and B.subtilis reached the conclusion that distance models can be applied across species (9); however, our results suggest that this is not true in general. Accuracy in other genomes Accuracy is below 75% in three genomes which have unusually weak relationships between conservation and close spacing: Methanocaldococcus jannaschii (formerly Methanococcus), Synechocystis (discussed below) and Desulfovibrio vulgaris, which improves to 79% when recently sequenced relatives are added (data not shown). The only other genome with such low accuracy is Rickettsia prowazekii, probably because of large numbers of pseudogenes and ‘split’ genes (24). Overall, we predict that the accuracy of the method is >82% for most genomes. –11 –4 –1 25 50 100 150 200 300 –4 –2 0 2 4 Intergenic Distance (d) ln(likelihood ratio) E.coli B.subtilis H.pylori C.trachomatis Synechocystis Halobacterium B.anthracis Figure 6. Unsupervised distance models across 124 genomes. We show boxplots, across 124 genomes, of the genome-specific log-likelihoods ln(P(Distance|Operon)/P(Distance|NotOperon)) at the indicated distances. Where the log likelihood is zero, operon and not-operon pairs are predicted to be equallylikelyto havethat distance.The boxesshow quartilesand medians, whiskers extend up to 1.5 times the interquartile range from the box, and dots show outlying genomes. The non-linear x-axis highlights the sharp peak around the common separations of 1 and 4. Distance models for a few specific genomes are shown with lines. Although most genomes follow the same trend of more operons at lower separations, significant differences are seen in the shape and magnitude of their distance models. ln(likelihood ratio) ln(likelihood ratio) Pseudogenes in ancestral operons The correlation between intergenic distance and conserved proximity might be weakened in some genomes by the disruption of genes within ancestral operons. For example, Bacillus anthracis str. Ames has an unusual distance model, while its relative B.subtilis has a typical model (Figure 6). B.anthracis has 12 apparent pseudogenes (BLASTn hits to an annotated open reading frame (ORF) of over 200 bases in length) within operons conserved in a distant genome, whereas B.subtilis has none. We examined two of these pseudogenes, and found that those ORFs were also disrupted in another sequenced strain, so these pseudogenes are unlikely to be sequencing errors. Over all same-strand pairs in B.anthracis, we found that 166 were separated by candidate pseudogenes that were syntenic in B.cereus (a close relative), For both genomes, predictions made using the genome- specific distance model show significantly better agreement with microarray data than predictions from a model trained on known E.coli operons [the method of (9)]. In Halobacterium, the Spearman correlation of binary distance-only predictions with microarray similarity (Pearson r) is 0.210 for the genome- specific model versus 0.127 for the E.coli distance model (P = 0.04, two-sided t-test of correlation of rank(r) versus Nucleic Acids Research, 2005, Vol. 33, No. 3 890 (A) Halobacterium P(Operon|Distance) 0.0 0.2 0.4 0.6 0.8 1.0 (B) H. pylori 0.0 0.2 0.4 0.6 0.8 1.0 (C) E. coli 0.0 0.2 0.4 0.6 0.8 1.0 <–26 1:19 50:99 >200 <–26 1:19 50:99 >200 0.0 0.4 0.8 Microarray Similarity (r) 0.0 0.4 0.8 <–26 1:19 50:99 >200 0.0 0.4 0.8 Figure 7. Microarrays confirm genome-specific differences in distance models. The panels show the genome-specific distance models (top) and box plots of microarray similarity (bottom) for same-strand pairs separated by various intergenic distances in (A) Halobacterium NRC-1, (B) H.pylori and (C) E.coli. The ranges of distances were selected to make the number of pairs within each range more uniform. In the top panels, the bars show the average of the genome-specific distance model P(Operon|Distance) within each range, and the stars with lines show the corresponding value from E.coli. In the bottom panels, the boxes show quartiles and medians of microarray similarity (Pearson r) within each range, and the grey bars show 90% confidence intervals around the median. If two grey bars do not overlap then the medians are significantly different (P < 0.05). Pseudogenes in ancestral operons <–26 1:19 50:99 >200 0.0 0.4 0.8 <–26 1:19 50:99 >200 0.0 0.4 0.8 Figure 7. Microarrays confirm genome-specific differences in distance models. The panels show the genome-specific distance models (top) and box plots of microarray similarity (bottom) for same-strand pairs separated by various intergenic distances in (A) Halobacterium NRC-1, (B) H.pylori and (C) E.coli. The ranges of distances were selected to make the number of pairs within each range more uniform. In the top panels, the bars show the average of the genome-specific distance model P(Operon|Distance) within each range, and the stars with lines show the corresponding value from E.coli. In the bottom panels, the boxes show quartiles and medians of microarray similarity (Pearson r) within each range, and the grey bars show 90% confidence intervals around the median. If two grey bars do not overlap then the medians are significantly different (P < 0.05). so that pseudogenes may be a sufficient explanation for the unusual distance model of B.anthracis. alternative gene models from CyanoBase (http://www. kazusa.or.jp/cyano/) or produced by CRITICA (27) as well as the standard set from NCBI. Both alternative sets of gene models included TTG start codons and produced the same anomalous distance model (data not shown). Thus, the unusual distribution of intergenic distances for genes within operons in Synechocystis is not an artifact and reflects a biological difference in the structure of this genome. Second, we ruled out strong strand bias or unusual numbers of pseudogenes, either of which might affect our method for estimating P(Operon|Same). Thus, assuming that the microarray-based estimates are more accurate than the sequence-based estimates of the total number of operons, it is a mystery why genes that are not co-transcribed would tend to occur on the same strand of DNA. Operons in the «-Proteobacteria It has been suggested that H.pylori and its relative Campylobacter jejuni have few operons (25,26). However, we observe a clear excess of same-strand pairs, which indic- ates organization of genes into operons (15). Indeed, from the number of same-strand pairs, we estimate that most such pairs in these genomes are in operons—71% in H.pylori and 72% in C.jejuni, higher rates than observed for E.coli or B.subtilis. In addition, 20.5% of these same-strand gene pairs in H.pylori are conserved within 5 kb in C.jejuni, versus only 3.4% of opposite-strand pairs (P < 1013, c2 test). These conserved pairs are separated by smaller distances than other pairs in both genomes (data not shown). Finally, and most significantly, microarray data for H.pylori indicates that predicted operon pairs have much greater similarity in expression profiles than do predicted not-operon pairs (Figure 4), and this is largely due to the distance model (Table 1). Thus, both comparative genomics and microarray data confirm the existence of many operons in these genomes. DISCUSSION Interpreting the wealth of microbial sequence data requires unsupervised methods for statistical inference and careful val- idation against experiment across as many phylogenetically diverse species as possible. We have demonstrated accurate unsupervised prediction of operons by combining comparative genomics and genome-specific distance models. Our method relies on the assumption, first introduced by (7) and which we have validated against known operons and against microarray data, that not-operon pairs resemble opposite-strand pairs with respect to conservation and functional similarity. REFERENCES 1. Salgado,H., Moreno-Hagelsieb,G., Smith,T.F. and Collado-Vides,J. (2000) Operons in Escherichia coli: genomic analyses and predictions. Proc. Natl Acad. Sci. USA, 97, 6652–6657. 2. Zheng,Y., Szustakowski,J.D., Fortnow,L., Roberts,R.J. and Kasif,S. (2002) Computational identification of operons in microbial genomes. Genome Res., 12, 1221–1230. 3. Sabatti,C., Rohlin,L., Oh,M.K. and Liao,J.C. (2002) Co-expression patternfromDNAmicroarrayexperimentsasatoolforoperonprediction. Nucleic Acids Res., 30, 2886–2893. 4. Bockhorst,J., Qiu,Y., Glasner,J., Liu,M., Blattner,F. and Craven,M. (2003a) Predicting bacterial transcription units using sequence and expression data. Bioinformatics, 19 (Suppl. 1), I34–I43. We further improved our predictions by combining genome-specific distance models with comparative features (conserved proximity) and a functional feature (matching COG function codes). We also improved the accuracy of com- parative operon prediction by handling distantly and closely related species differently. As more genomes are sequenced, these comparative features should become more powerful. We considered using patterns of gene co-occurrence [‘phylo- genetic profiles,’ (28)], but this did not provide statistically significant additional information (data not shown). The similarity of textual annotations has been used to select a genome-specific distance threshold, but this threshold and the underlying feature were used to aid functional annotation, and their effectiveness for operon prediction was not directly tested (29). This feature and other precise measures of func- tional similarity [e.g. from metabolism (2)] might improve accuracy. Finally, we suspect that transcription intiation or rho-independent termination sites that are conserved across species might aid prediction. 5. Bockhorst,J., Craven,M., Page,D., Shavlik,J. and Glasner,J. (2003b) A Bayesian network approach to operon prediction. Bioinformatics, 19, 1227–1235. 6. de Hoon,M.J.L., Imoto,S., Kobayashi,K., Ogasawara,N. and Miyano,S. (2004) Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information. Pac. Symp. Biocomput., 276–287. 7. Ermolaeva,M.D., White,O. and Salzberg,S.L. (2001) Prediction of operons in microbial genomes. Nucleic Acids Res., 29, 1216–1221. 8. Wolf,Y.I., Rogozin,I.B., Kondrashov,A.S. and Koonin,E.V. (2001) Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res., 11, 356–372. 9. Moreno-Hagelsieb,G. and Collado-Vides,J. (2002) A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics, 18 (Suppl. 1), S329–S336. 10. Rogozin,I.B., Makarova,K.S., Natale,D.A., Spiridonov,A.N., Tatusov,R.L., Wolf,Y.I., Yin,J. and Koonin,E.V. (2002) Congruent evolution of different classes of non-coding DNA in prokaryotic genomes. Nucleic Acids Res., 30, 4264–4271. genomes. Nucleic Acids Res., 30, 4264–4271. 11. Overbeek,R., Fonstein,M., D’Souza,M., Pusch,G.D. and Maltsev,N. (1999) The use of gene clusters to infer functional coupling. Proc. Natl Acad. Sci. USA, 96, 2896–2901. ACKNOWLEDGEMENTS We thank Nitin Baliga, Richard Bonneau, Tracy Nicholson and Richard Stephens for providing unpublished microarray data, Inna Dubchak for insightful discussions and sharing resources, and the rest of the Arkin lab for comments on the manuscript. This work was supported by a grant from the DOE Genomics:GTL program (DE-AC03-76SF00098). Funding to pay the Open Access publication charges for this article was provided by grant DE-AC03-76SF00098. p g p g It has been proposed that intergenic distances between genes in operons are similar in all prokaryotes. Moreover, it has been suggested that the distance distribution from E.coli can be used to predict operons in unrelated prokaryotes and to estimate the total number of TUs in their genomes (9). How- ever, we found that many genome-specific distance models are different from E.coli. Using comparative genomics and gene expression data, we confirmed that genes in operons in both Halobacterium and H.pylori are closer together than genes in E.coli operons, and that our genome-specific approach improved prediction accuracy in these genomes. In contrast, operons in B.anthracis appear to be widely spaced due to large numbers of pseudogenes within ancestral operons. We do not know whether such operons that have been disrupted by pseudogenes are still functional. In Synechocystis, the unusu- ally wide spacing within conserved operons (9,10) seems not to be due to errors in gene start predictions (9) or pseudogenes, and might be related to the apparent surplus of same-strand not-operon gene pairs. Unusual operons in Synechocystis From the number of same-strand pairs, we estimate that 48% of same-strand pairs in Synechocystis are in operons. The microarray-based estimate, however, is significantly lower and suggests that only 34 – 6% of same-strand pairs are co-transcribed in operons (Table 2). Furthermore, our results and those of others suggest that many conserved operons in Synechocystis have large distances between genes [see (9,10) and Figure 6]. We investigated a number of possible reasons for these discrepancies. First, it has been suggested that the gene models may be inaccurate because of the absence of TTG initiation codons (9). To rule out this explanation, we analyzed We used microarray data to estimate the accuracy of our operon predictions and to show that the unsupervised predic- tions are effective in six phylogenetically diverse prokaryotes, including the archaeon Halobacterium NRC-1, a Gram- positive bacterium (B.subtilis) with strong coding strand bias, a member (H.pylori) of the e-Proteobacteria, which have been described as having few operons (25,26), the cyanobacterium Nucleic Acids Research, 2005, Vol. 33, No. 3 891 Synechocystis PCC 6803, which has unusual operon structure (9,10), and the intracellular parasite Chlamydia trachomatis. Furthermore, in E.coli and B.subtilis, unsupervised predictions are about as accurate as supervised predictions that are optim- ized using known operon structure. Because the predictions for other genomes were not validated against known operons, it is conceivable that the method is predicting some other kind of functional relationship between adjacent genes, rather than operons. However, most of the power of this method to predict co-expression comes from the genome-specific distance mod- els, and the extent of agreement with both microarrays and known operons is quantitatively consistent with the method’s internal estimate of its accuracy, so we argue that the method must be predicting pairs of genes that are co-transcribed. have shown promise in the assignment of gene function, our results may also aid the annotation of uncharacterized genes. Predictions for over 120 genomes, as well as source code, are freely available from the VIMSS website (http://vimss.org/ operons). SUPPLEMENTARY MATERIAL Supplementary Material is available at NAR Online. Supplementary Material is available at NAR Online. REFERENCES These operon predictions will be useful for analyses of gene regulation, for example, to focus the search for new transcrip- tion factor binding motifs to those upstream regions which are likely to contain promoters (30,31). They should also aid in analyzing microarray data—averaging expression profiles over several genes in a predicted operon can reduce noise and improve the effectiveness of clustering algorithms (R.P. Koche and E.J. Alm, unpublished data). As both con- served gene order (11,17) and distances between genes (29) 12. Korbel,J.O., Jensen,L.J., von Mering,C. and Bork,P. (2004) Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs. Nat. Biotechnol., 22, 911–917. 13. Tatusov,R.L., Natale,D.A., Garkavtsev,I.V., Tatusova,T.A., Shankavaram,U.T., Rao,B.S., Kiryutin,B., Galperin,M.Y., Fedorova,N.D. and Koonin,E.V. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 29, 22–28. 892 Nucleic Acids Research, 2005, Vol. 33, No. 3 892 14. Sharp,P.M. and Li,W.-H. (1987) Codon usage in regulatory genes in Escherichiacolidoesnotreflectselectionfor‘rare’codons.NucleicAcids Res., 15, 1281–1295. characteristic curves: a nonparametric approach. Biometrics, 44, 837–845. 24. Ogata,H., Audic,S., Renesto-Audiffren,P., Fournier,P.E., Barbe,V., Samson,D., Roux,V., Cossart,P., Weissenbach,J., Claverie,J.M. et al. (2001) Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science, 293, 2093–2098. 15. Cherry,J.L. (2003) Genome size and operon content. J. Theor. Biol., 221, 401–410. 16. Gollub,J., Ball,C.A., Binkley,G., Demeter,J., Finkelstein,D.B. 16. Gollub,J., Ball,C.A., Binkley,G., Demeter,J., Finkelstein,D.B., Hebert,J.M., Hernandez-Boussard,T., Jin,H., Kaloper,M., Matese,J.C. et al. (2003) The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res., 31, 94–96. 25. Thompson,L.J., Merrell,D.S., Neilan,B.A., Mitchell,H., Lee,A. and Falkow,S. (2003) Gene expression profiling of Helicobacter pylori reveals a growth-phase-dependent switch in virulence gene expression. Infect. Immun., 71, 2643–2655. 17. Huynen,M., Snel,B., Lathe,3rd W. and Bork,P. (2000) Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res., 10, 1204–1210. 26. Parkhill,J., Wren,B.W., Mungall,K., Ketley,J.M., Churcher,C., Basham,D.,Chillingworth,T.,Davies,R.M.,Feltwell,T.,Holroyd,S.etal. (2000) The genomesequenceof the food-bornepathogen Campylobacter jejuni reveals hypervariable sequences. Nature, 403, 665–668. 18. Schaffer,A.A., Aravind,L., Madden,T.L., Shavirin,S., Spouge,J.L., Wolf,Y.I.,Koonin,E.V. and Altschul,S.F. (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res., 29, 2994–3005. 27. Badger,J.H. and Olsen,G.J. (1999) CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol., 16, 512–524. 19. Marchler-Bauer,A., Anderson,J.B., DeWeese-Scott,C., Fedorova,N.D., Geer,L.Y., He,S., Hurwitz,D.I., Jackson,J.D., Jacobs,A.R., Lanczycki,C.J.etal.(2003)CDD:a curatedEntrezdatabaseofconserved domain alignments. Nucleic Acids Res., 31, 383–387. 28. Pellegrini,M., Marcotte,E.M., Thompson,M.J., Eisenberg,D. and Yeates,T.O. (1999) Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. REFERENCES Natl Acad. Sci. USA, 96, 4285–4288. 20. Sjolander,K., Karplus,K., Brown,M., Hughey,R., Krogh,A., Mian,I.S. and Haussler,D. (1996) Dirichlet mixtures: A method for improving detection of weak but significant protein sequence homology. Comput. Appl. Biosci., 12, 327–345. 29. Strong,M., Mallick,P., Pellegrini,M., Thompson,M.J. and Eisenberg,D. (2003) Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biol., 4, R59. 21. Karp,P.D., Riley,M., Saier,M., Paulsen,I.T., Collado-Vides,J., Paley,S.M., Pellegrini-Toole,A., Bonavides,C. and Gama-Castro,S. (2002) The EcoCyc Database. Nucleic Acids Res., 30, 56–58. 30. McGuire,A.M., Hughes,J.D. and Church,G.M. (2000) Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes. Genome Res., 10, 744–757. 22. Itoh,T., Takemoto,K., Mori,H. and Gojobori,T. (1999) Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol. Biol. Evol., 16, 332–346. 31. McCue,L., Thompson,W., Carmack,C., Ryan,M.P., Liu,J.S., Derbyshire,V. and Lawrence,C.E. (2001) Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. Nucleic Acids Res., 29, 774–782. p g 23. DeLong,E.R., DeLong,D.M. and Clarke-Pearson,D.L. (1988) Comparing the areas under two or more correlated receiver operating
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https://www.chimia.ch/chimia/article/download/2023_263/6205
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Flow Chemistry Highlights
Chimia
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Columns Columns CHIMIA 2023, 77, No. 4 263 Chimia 77 (2023) 263 © Swiss Chemical Society 263 CHIMIA 2023, 77, No. 4 doi:10.2533/chimia.2023.263 Chimia 77 (2023) 263 © Swiss Chemical Society Selected Topic: An Interview with Dominique Roberge, Lonza For this Flow Chemistry Column, we are happy to interview Dr. Dominique Roberge, a Flow Chemistry Specialist Director Group Leader at Lonza and Adjunct Professor at University of Ottawa. basics of chemical engineering, which is available at institutes and universities working in this field. For example, the Swiss Chemical Society organized a seminar in 2022 where this topic was addressed. Flow Chemistry Network: Flow chemistry is already being con- sidered as a mature technology. What is left to do to turn it into a routine tool for chemists and chemical engineers? Flow Chemistry Network: What brought you to the field of flow chemistry, and what made you stay and contribute in the area? Dominique: Is flow chemistry really a mature technology? In the manufacturing processes we still encounter a predominance of batch processing over flow chemistry, even where there are obvious benefits in making the change. It is often difficult to switch technology later on because of process risks such as new impurities in an API, and regulations. I will consider it a ma- ture technology when scientists take into account using flow in process development from the start. The education process still needs to go on. Dominique: When we started a project at Lonza in 2003, we called it microreactor technology. Since then, microreactors have become central tools in continuous flow process develop- ment in the pharmaceutical industry. However, while the idea of simply running additional microreactors in parallel to increase throughput is a compelling one, it is not always practical. The broader concept of flow chemistry has the objective of achieving process intensification with best-in-class reactor technology. The field remains rather attractive to me as a scientist because it chal- lenges the status quo of a relatively conservative and established industry. Flow Chemistry Network: What, for you, have been the major developments in the field over the years? Dominique: There are now established companies who supply reactor technology, ranging from plate-type to active mixing de- vices such as the continuous stirred tank reactor (CSTR). A new business has emerged, and it has proved viable. Surprisingly, the main business growth for these companies has been in India and China, showing that the industry in the western world is yet to embrace the technology to its full extent. Many interesting chal- lenges remain! Would you like to propose a Flow Chemistry Highlight topic here? Please contact Agnieszka Ladosz or Christophe Allemann, agnieszka.ladosz@idorsia.com; christophe.allemann@hefr.ch Selected Topic: An Interview with Dominique Roberge, Lonza Flow Chemistry Network: Are there any exciting innovations in the field today that you think could give it even greater impact? Flow Chemistry Network: Are there any exciting innovations in the field today that you think could give it even greater impact? Dominique: A key development has been in using loop-type re- actors (recycle-flow) for photo- and electro-chemistry, where the vessel is used as holding tank (i.e. batch operation). Assuming that flow chemistry also encompasses these loop-type reactors, then its meaning is broader than continuous manufacturing. Consequently, flow chemistry has a wide-ranging field of ap- plication that will drive pharmaceutical manufacturing to a new age of efficient, green, and sustainable processes. Flow Chemistry Network: What should a young researcher/in- dustrial chemist keep in mind when embarking on a project using flow processing? Dominique: Flow technology is mainly used for process intensi- fication to enhance transport phenomena, namely heat and mass transfer rates. A young chemist should become familiar with the Would you like to propose a Flow Chemistry Highlight topic here? Please contact Agnieszka Ladosz or Christophe Allemann agnieszka ladosz@idorsia com Would you like to propose a Flow Chemistry Highlight topic here? Please contact Agnieszka Ladosz or Christophe Allemann, agnieszka.ladosz@idorsia.com; christophe.allemann@hefr.ch
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Modeling the behaviour of alluvial and blasted quarried rockfill materials
Geotechnical and geological engineering
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Modeling the behaviour of alluvial and blasted quarried rockfill materials N. P. Honkanadavar • Nripendra Kumar • Murari Ratnam Received: 26 July 2013 / Accepted: 12 May 2014 / Published online: 5 June 2014  The Author(s) 2014. This article is published with open access at Springerlink.com Abstract Two types of modeled rockfill materials were collected from Renuka dam site, Himachal Pradesh, India and Salma dam site, Afghanistan. The rockfill material collected from Renuka dam site is rounded to sub-rounded in shape and the rockfill material collected from Salma dam site is angular to sub-angular in shape. The prototype gradation rockfill material consists maximum particle size larger than 1,000 mm. Therefore, for carrying out laboratory testing and modeling the bahaviour, the prototype rockfill material is scaled down to the maximum particle size (dmax) of 25, 50 and 80 mm for both projects material using parallel gradation technique. Triaxial compression and Index properties tests were conducted on both project rockfill materials and are presented. From the triaxial behaviour, it is observed that the stress–strain behaviour is non-linear, inelastic and stress dependent for both the materials. The material compresses during the initial shearing and shows dilation effect with further shearing. It is observed that the /-value for alluvial rockfill material increases with increase in dmax and reverse trend is observed for blasted quarried rockfill material which shows the importance of the type of material. The stress–strain-volume change behaviour of both pro- jects modeled rockfill material was predicted by using hierarchical single surface (HISS) model based on elasto plasticity and compared with the laboratory test results. From the comparison, it is observed that both results match closely. It is, therefore, suggested that the behaviour of both types of rockfill materials can be characterized successfully using HISS model. Keywords Rockfill  Modeling  Triaxial test  Stress–strain behaviour  HISS model Geotech Geol Eng (2014) 32:1001–1015 DOI 10.1007/s10706-014-9776-1 Geotech Geol Eng (2014) 32:1001–1015 DOI 10.1007/s10706-014-9776-1 ORIGINAL PAPER 1 Introduction They predicted the stress–strain-volume change behaviour of materials and compared with the observed results. From the predicted and observed results they found that both observed and predicted results match closely. presented in Table 1. This paper deals with the laboratory study of stress–strain-volume change behaviour, determination of shear strength parame- ters, prediction of the behaviour for rockfil material using non-associative HISS constitutive model and comparison of laboratory and predicted behaviour of both projects rockfill materials. 1 Introduction 1994, 1997, 1999, 2002a, 2002b, 2003, 2006; Gupta 2000; Abbas 2003; Honkanadavar 2010; Xiao et al. Xiao et al. 2011a, 2011b, 2012; Honkanadavar 2012). They predicted the stress–strain-volume change behaviour of materials and compared with the observed results. From the predicted and observed results they found that both observed and predicted results match closely. In the present research work, two types rockfill Table 1 Rockfill Materials Used Project name Location Name of the rock Renuka Dam Located on river Giri about 375 m downstream of confluence of Jogar-ka-Khala with river Giri in Himachal Pradesh, India Limestone Salma Dam Rock quarry near the Salma dam site 2 km downstream of Salma village in Herat province, Afghanistan Metamorphic gneiss Table 1 Rockfill Materials Used rockfill material used in the dam construction is large in size and it is not feasible to test it directly in the laboratory. Therefore, some kind of modeling tech- nique is often used to reduce the size of particles so that the specimens prepared with smaller size particles can be prepared and tested in the laboratory. Among all available modeling techniques, the parallel grada- tion technique (Lowe 1964) is most commonly used and the same has been adopted in the present study. The behaviour of the rockfill materials has been reported by number of researchers. Marsal (1967), Marachi et al. (1969), Venkatachalam (1993), Gupta (2000), and Abbas (2003), Honkanadavar (2010), Varadarajan et al. (1997, 1999, 2002, 2003, 2006), Honkanadavar (2011, 2012a, Honkanadavar et al. 2012) have performed laboratory tests on various rockfill materials with different confining pressures. They concluded that the strength parameter, / varies with the particle size. They had also observed that the trend of behaviour of alluvial rockfill material is opposite to that of blasted quarried rockfill material. For blasted quarried rockfill materials the angle of internal friction, / decreases with increase in dmax and for alluvial rockfill material the angle of internal friction, / increases with increase in dmax. HISS models have been used successfully to model the behavior of various materials (Desai 2001; Desai et al. 1986, 1995a, 1995b, Desai and Ugai 1996; Desai and Varadarajan 1987; Varadarajan and Desai 1987, 1993; Najjar et al. 1994; Varadarajan et al. 1994, 1997, 1999, 2002a, 2002b, 2003, 2006; Gupta 2000; Abbas 2003; Honkanadavar 2010; Xiao et al. Xiao et al. 2011a, 2011b, 2012; Honkanadavar 2012). 1 Introduction Number of river valley projects are being planned and implemented in India and abroad to store the natural water flowing in the rivers and use it later for different purposes viz. power generation, irrigation and flood control etc. Concrete, Masonry and Earth and rockfill dams are being constructed to store the river water. However, now a days, rockfill dams are widely being constructed all over the world because of their inherent flexibility, capacity to absorb large seismic energy, adaptability to various foundation conditions and economical as well. The behaviour of the rockfill materials used in the earth and rockfill dam is of considerable importance for the analysis, safe and economical design of rockfill dams. The prototype N. P. Honkanadavar (&)  N. Kumar  M. Ratnam Central Soil and Materials Research Station, New Delhi 110016, India e-mail: nphonkanadavar@gmail.com N. Kumar e-mail: nkmr_csmrs@rediffmail.com M. Ratnam e-mail: director-csmrs@nic.in 12 3 3 Geotech Geol Eng (2014) 32:1001–1015 1002 rockfill material used in the dam construction is large in size and it is not feasible to test it directly in the laboratory. Therefore, some kind of modeling tech- nique is often used to reduce the size of particles so that the specimens prepared with smaller size particles can be prepared and tested in the laboratory. Among all available modeling techniques, the parallel grada- tion technique (Lowe 1964) is most commonly used and the same has been adopted in the present study. The behaviour of the rockfill materials has been reported by number of researchers. Marsal (1967), Marachi et al. (1969), Venkatachalam (1993), Gupta (2000), and Abbas (2003), Honkanadavar (2010), Varadarajan et al. (1997, 1999, 2002, 2003, 2006), Honkanadavar (2011, 2012a, Honkanadavar et al. 2012) have performed laboratory tests on various rockfill materials with different confining pressures. They concluded that the strength parameter, / varies with the particle size. They had also observed that the trend of behaviour of alluvial rockfill material is opposite to that of blasted quarried rockfill material. For blasted quarried rockfill materials the angle of internal friction, / decreases with increase in dmax and for alluvial rockfill material the angle of internal friction, / increases with increase in dmax. HISS models have been used successfully to model the behavior of various materials (Desai 2001; Desai et al. 1986, 1995a, 1995b, Desai and Ugai 1996; Desai and Varadarajan 1987; Varadarajan and Desai 1987, 1993; Najjar et al. 1994; Varadarajan et al. 123 2.1 Rockfill Materials Used In the present research work modeled alluvial and blasted modeled quarried rockfill materials from Renuka dam site, India and Salma dam site, Afghanistan are obtained and used for research work. The details of the materials, location and rock types are given in Table 1. The alluvial rockfill material consist of rounded to sub-rounded particles in shape and quarried blasted rockfill material consist of angular to sub-angular in shape. The particle shapes of modeled alluvial (Renuka dam site) and blasted modeled quarried rockfill (Salma dam site) materials are shown in Figs. 1 and 2 respectively. Laboratory tests were conducted to determine the index properties of both types of rockfill materials and are given in Table 2. Proto- type gradation rockfill material consists of maxi- mum particle sizes of 1,000 and 600 mm for Renuka dam and Salma dam respectively. Rockfill material with such a large particle size is not feasible to test in the laboratory. Among all the available modeling techniques, the parallel gradation technique (Lowe 1964) is most commonly used and the same has been adopted in the present study to model the In the present research work, two types rockfill materials (alluvial and blasted quarried) have been considered. Renuka dam is a 148 m high earth and rockfill dam constructed using alluvial rockfill material across river Giri in Himachal Pradesh, India and Salma dam is a 107.5 m high earth and rockfill dam constructed using quarried blasted rockfill material across river Hari Rud, Afghanistan. The rock type of alluvial rockfill is limestone and quarried blasted rockfill is metamorphic gneiss. The details of project, location and types of rock are 123 Geotech Geol Eng (2014) 32:1001–1015 1003 Fig. 1 Modeled Alluvial Rockfill Materials from Renuka Dam project, Himachal Pradesh, India Fig. 2 Modeled Quarried Blasted Rockfill Materials from Salma Dam project, Afghanistan Fig. 1 Modeled Alluvial Rockfill Materials from Renuka Dam project, Himachal Pradesh, India Table 2 Index Properties of both Alluvial and Quarried Blasted Rockfill Materials Sl. No. Name of the test Renuka Dam project Salma Dam project 1 Los Angeles abrasion (%) 21.25 44.80 2 Aggregate crushing value (%) 35.20 38.90 3 Aggregate impact value (%) 26.90 34.90 4 Water absorption (%) 1.3 1.8 5 Specific gravity 2.66 2.73 Table 2 Index Properties of both Alluvial and Quarried Blasted Rockfill Materials gradation curves for Renuka and Salma dam rockfill materials are shown in Figs. 3 and 4 respectively. Fig. 2 Modeled Quarried Blasted Rockfill Materials from Salma Dam project, Afghanistan Fig. 1 Modeled Alluvial Rockfill Materials from Renuka Dam project, Himachal Pradesh, India 2.1 Rockfill Materials Used The values of index properties of alluvial rockfill material shows lessor values as compared to blasted quarried rockfill materials. This is due to the reason that the alluvial rockfill material formed as a result of disintegration of the hill rock in the upper himalaya, carried away the same by water, impact, rolling, sliding action in the riverbed and depositing the only hard core portion of the rock particles. However, the blasted rock is fresh, angular, having minor cracks and loose surface corners gives the index values higher as copmpared to alluvial rockfill material. As these values of both projects material are within the permissible limit, both materials can be used as rockfill material in the construction of rockfill dam. prototype rockfill materials. Modeled rockfill mate- rials with dmax of 80, 50 and 25 mm for Renuka and Salma dam projects were obtained using parallel gradation technique. The prototype and modeled 12 3 3 1004 Geotech Geol Eng (2014) 32:1001–1015 2.2 Experimental Programme 2.2.1 Drained Triaxial Shear Tests l i d i d d d d i d have been conducted on all the modeled rockfill materials collected from both the projects. Details of the triaxial equipment used in the present research work are given in Fig. 5. For testing, a dry density Fig. 3 Prototype and Modeled Grain Size Distribution Curves for Renuka Dam Project Fig. 4 Prototype and Modeled Grain Size Distribution Curves for Salma Dam Project Fig. 3 Prototype and Modeled Grain Size Distribution Curves for Renuka Dam Project Fig. 3 Prototype and Modeled Grain Size Distribution Curves for Renuka Dam Project Fig. 3 Prototype and Modeled Grain Size Distribution Curves for Renuka Dam Project 2.2 Experimental Programme 2.2.1 Drained Triaxial Shear Tests have been conducted on all the modeled rockfill materials collected from both the projects. Details of the triaxial equipment used in the present research Fig. 4 Prototype and Modeled Grain Size Distribution Curves for Salma Dam Project nd e for have been conducted on all the modeled rockfill materials collected from both the projects. Details of the triaxial equipment used in the present research work are given in Fig. 5. For testing, a dry density corresponding to 87 % relative density is adopted. Three confining pressures i.e. 0.4, 0.8 and 1.2 MPa were used for testing each dmax of modeled rockfill material. 2.1 Rockfill Materials Used The quantities of various fractions of mod- eled rockfill materials required to achieve the grada- tion for preparing the specimen at the specified density was determined by weight. The specimen was prepared using a split mould and two rubber 2.2.1 Drained Triaxial Shear Tests Relative density tests were conducted and determined minimum and maximum dry densities for both projects modeled rockfill material. Using minimum and maximum dry densities, the packing density of the specimen for triaxial shear test was determined corresponding to 87 % relative density. A specimen size of 381 mm diameter and 813 mm height is prepared and consolidated drained triaxial shear tests 12 123 1005 Geotech Geol Eng (2014) 32:1001–1015 Geotech Geol Eng (2014) 32:1001–1015 . 5 Triaxial mpression Test Setup 1 mm dia. and 813 mm h) Fig. 5 Triaxial Compression Test Setup (381 mm dia. and 813 mm high) Fig. 5 Triaxial Compression Test Setup (381 mm dia. and 813 mm high) 2.2.1.1 Stress–Strain-Volume Change Behaviour The details of projects, maximum particle size (dmax), confining pressure, r3, axial strain, e1 and volumetric strain ev at failure for peak deviator stress are presented in Table 3. Stress–strain-volume change behaviour of six modeled rockfill materials tested for three confining pressures viz. 0.4, 0.8 and 1.2 MPa for Renuka dam and Salma dam projects are shown in Figs. 6, 7, 8, 9 and 10 and 11. From the deviator stress v/s axial strain relationship, it is observed that the behaviour of both materials is non-linear, inelastic and stress level dependent. For a dmax, the deviator stress and axial strain at failure increases with increase in confining pressure for both the materials. For a confining pressure, the deviator stress increases with increase in dmax for alluvial rockfill materials and it decreases with increase in dmax for quarried rockfill material. From the observed stress–strain curves of all the dmax tested, it is observed that the kind of mode of failure of specimen is brittle shear failure. The volume 2.2.1.1 Stress–Strain-Volume Change Behaviour The details of projects, maximum particle size (dmax), confining pressure, r3, axial strain, e1 and volumetric strain ev at failure for peak deviator stress are presented in Table 3. Stress–strain-volume change behaviour of six modeled rockfill materials tested for three confining pressures viz. 0.4, 0.8 and 1.2 MPa for Renuka dam and Salma dam projects are shown in Figs. 6, 7, 8, 9 and 10 and 11. From the deviator stress v/s axial strain relationship, it is observed that the behaviour of both materials is non-linear, inelastic and stress level dependent. For a dmax, the deviator stress and axial strain at failure increases with increase in confining pressure for both the materials. 2.2.1 Drained Triaxial Shear Tests For a confining pressure, the deviator stress increases with increase in dmax for alluvial rockfill materials and it decreases with increase in dmax for quarried rockfill material. From the observed stress–strain curves of all the dmax tested, it is observed that the kind of mode of failure of specimen is brittle shear failure. The volume 2.2.1.1 Stress–Strain-Volume Change Behaviour The details of projects, maximum particle size (dmax), confining pressure, r3, axial strain, e1 and volumetric strain ev at failure for peak deviator stress are presented in Table 3. Stress–strain-volume change behaviour of six modeled rockfill materials tested for three confining pressures viz. 0.4, 0.8 and 1.2 MPa for Renuka dam and Salma dam projects are shown in Figs. 6, 7, 8, 9 and 10 and 11. From the deviator stress v/s axial strain relationship, it is observed that the behaviour of both materials is non-linear, inelastic and stress level dependent. For a dmax, the deviator stress and axial strain at failure increases with increase in confining pressure for both the materials. For a confining pressure, the deviator stress increases with increase in dmax for alluvial rockfill materials and it decreases with increase in dmax for quarried rockfill material. From the observed stress–strain curves of all the dmax tested, it is observed that the kind of mode of failure of specimen is brittle shear failure. The volume membranes of 1 mm inner and 3 mm outer. The specimen was compacted in six equal layers using mechanical vibratory compactor. The specimen was saturated by allowing water to pass through the base of the triaxial specimen and using a top drainage system for removing air voids. Conventional triaxial com- pression (CTC) tests were conducted in two phases; consolidation and shearing. In the first phase, required consolidation pressure is applied to the specimen and recorded the change in the volume of the specimen by allowing the water to drain out. In the second phase, keeping the confining pressure constant, the specimen was sheared till the failure under strain controlled test with a rate of loading 1 mm/min. During the test, for every strain level, deviator stress and volume change is recorded. The specimen is considered as failed when the specimen stops taking the load or when axial strain reaches 15 % whichever is earlier. From the test results, stress–strain-volume change behaviour was studied and presented. 2.2.1 Drained Triaxial Shear Tests 12 3 3 Geotech Geol Eng (2014) 32:1001–1015 1006 Table 3 Axial and Volumetric Strains at Failure (Peak Deviator Stress) for Renuka Dam and Salma Dam Projects Name of project dmax (mm) Confining pressure (r3) MPa Axial strain at failure (%) Volumetric strain at failure (%) Renuka Dam project 25 0.4 8.0 0.455 0.8 8.5 1.060 1.2 9.0 1.650 50 0.4 8.5 0.526 0.8 9.5 1.385 1.2 10.0 1.831 80 0.4 9.0 0.605 0.8 10.0 1.465 1.2 10.5 1.910 Salma Dam project 25 0.4 8.5 0.565 0.8 9.0 1.213 1.2 9.5 1.824 50 0.4 9.0 0.662 0.8 9.5 1.531 1.2 10.0 1.985 80 0.4 9.5 0.736 0.8 10.0 1.625 1.2 10.5 2.312 phase changing line. The dilation effect decreases with increase in confining pressure and dmax for both the materials. Similar behavior has been observed and reported by Varadarajan et al. (1997, 1999, 2002, 2003, Varadarajan and Abbas 2006); Honkanadavar (2010); Honkanadavar and Sharma (2011, 2012a); Honkanadavar et al. (2012b). Table 3 Axial and Volumetric Strains at Failure (Peak Deviator Stress) for Renuka Dam and Salma Dam Projects 2.2.1.2 Evaluation of Shear Strength Parame- ters Mohr–Coulomb failure criterion has been adopted for determining the angle of internal friction at failure. Failure envelopes in mean stress (rm) v/s deviator stress (r1 - r3) space are plotted for all the dmax tested with different confining pressures for Renuka and Salma dam materials. The angle of internal friction, / is determined from the best fit straight lines of these plots for both the modeled rockfill materials. Figure 12 shows a typical plot for Renuka dam site alluvial modeled rockfill material for maximum particle size (dmax) of 25 mm. It is observed that the cohesion, c for all the drained tests with a dmax of both project rockfill materials is observed as zero. The /-values are tabulated in Table 4. 2.2.2 Effect of Particle Size on Strength Parameter, / change behaviour shows compression during the initial stage of shearing and dilation effect is observed with further shearing for all the dmax. No strength reduction phenomenon or strain-softening behavior is observed when the stress state passes the The strength of rockfill material used in the construc- tion of rockfill dams is affected by number of factors such as mineral composition, particle size, shape, gradation, relative density and surface texture of the (a) (a) (b) Fig. 6 Stress–Strain-Volume Change Behaviour of 25 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour (b) (b) (a) Fig. 6 Stress–Strain-Volume Change Behaviour of 25 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour lume Change Behaviour of 25 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume 12 3 Geotech Geol Eng (2014) 32:1001–1015 1007 (a) (a) (b) Fig. 7 Stress–Strain-Volume Change Behaviour of 50 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour (b) (a) (b) lume Change Behaviour of 50 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume Fig. 7 Stress–Strain-Volume Change Behaviour of 50 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour (a) (b) Fig. 8 Stress–Strain-Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour (b) (a) (b) (a) Fig. 8 Stress–Strain-Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume change behaviour lume Change Behaviour of 80 mm dmax for Renuka Dam Project Material. a Stress–strain behaviour b Volume particles (Venkatachalam 1993; Gupta 2000; Abbas 2003; Honkanadavar 2010, 2011, 2012a, 2012b). The effect of maximum particle size, dmax on strength parameter, / for both project materials are shown in the Fig. 13. It is observed that the angle of internal friction, / increases with increase in dmax for Renuka alluvial and / decreases with increase in dmax for Salma dam quarried rockfill material. The values of angle of internal friction for Shah Nehar project (alluvial), Purulia dam (quarried) and Parbati dam project (quarried) rockfill materials reported by Abbas (2003) are also superimposed in Fig. 13. They show similar trend as that of Renuka riverbed and Salma quarried rockfill material. 2.2.2 Effect of Particle Size on Strength Parameter, / Due to higher interlocking of angular particles, the strength of quarried rockfill material is more than the rounded rockfill material for the same dmax. 3 Constitutive Modeling 3.1.1 Elastic Parameters y = 1.511x R² = 0.974 0.00 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 0.00 0.50 1.00 1.50 2.00 2.50 Deviator Stress (σ1-σ3) MPa Mean Stress (σm = (σ1+2σ3)/3) MPa 6Sinφ/3-Sinφ = 1.5113 φ = 37.13o Fig. 12 Relation between Mean stress (rm) v/s deviator stress (r1-r3) space for the dmax of 25 mm of Renuka dam materials Table 4 /-values of Alluvial and Quarried Rockfill Materials Rockfill Material from dmax (mm) /-Value (degree) Renuka Dam, Himachal Pradesh (Alluvial) 25 37.13 50 38.37 80 39 76 y = 1.511x R² = 0.974 0.00 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 0.00 0.50 1.00 1.50 2.00 2.50 Deviator Stress (σ1-σ3) MPa Mean Stress (σm = (σ1+2σ3)/3) MPa 6Sinφ/3-Sinφ = 1.5113 φ = 37.13o Fig. 12 Relation between Mean stress (rm) v/s deviator stress (r1-r3) space for the dmax of 25 mm of Renuka dam materials y = 1.511x R² = 0.974 0.00 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 0.00 0.50 1.00 1.50 2.00 2.50 Deviator Stress (σ1-σ3) MPa Mean Stress (σm = (σ1+2σ3)/3) MPa 6Sinφ/3-Sinφ = 1.5113 φ = 37.13o Fig. 12 Relation between Mean stress (rm) v/s deviator stress (r1-r3) space for the dmax of 25 mm of Renuka dam materials described in detail in various references (Varadarajan and Desai 1993; Gupta 2000; Desai 2001; Abbas 2003; Varadarajan et al. 2003, 2006; Honkanadavar 2010). The procedure is briefly presented herein. 3.1 Material Parameters Table 4 /-values of Alluvial and Quarried Rockfill Materials Rockfill Material from dmax (mm) /-Value (degree) Renuka Dam, Himachal Pradesh (Alluvial) 25 37.13 50 38.37 80 39.76 Salma Dam, Afghanistan (Quarried) 25 43.35 50 42.39 80 40.84 Table 4 /-values of Alluvial and Quarried Rockfill Materials 3 Constitutive Modeling Hierarchical single surface (HISS) model developed by Desai and co-workers (Desai and Siriwardhane 1980; Desai and Siriwardhane 1980; Desai et al. 1991) basedon 12 3 Geotech Geol Eng (2014) 32:1001–1015 1008 (a) (b) Fig. 9 Stress–Strain-Volume Change Behaviour of 25 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour (a) (b) (b) (a) Fig. 9 Stress–Strain-Volume Change Behaviour of 25 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour lume Change Behaviour of 25 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume (a) (a) (a) (b) Fig. 10 Stress–Strain- Volume Change Behaviour of 50 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour (b) (b) (a) in which j is non-associative parameter, a0 is a (hardening parameter) at the beginning of shear loading and elasto-plastic theory has been used to characterize the behavior of rockfill materials. The non-associative d1 model (Desai and Wathugala 1987; Desai 2001; Varad- arajan et al. 1999, 2003, 2006; Gupta 2000; Abbas 2003; Honkanadavar 2010; Honkanadavar and Sharma 2013) gives the plastic potential function as rv ¼ nv n ð3Þ ð3Þ where, n is plastic strain trajectory, and Q ¼ J2D P2 a    aQ J1 Pa  n þc J1 Pa  2 " # 1  bSr ð Þm ð1Þ nv ¼ Z dep v   ffiffiffi 3 p ð4Þ ð4Þ where, where, dev p is the incremental plastic volumetric strain and nv is volumetric part of n. aQ ¼ a þ j a0 a ð Þ 1  rv ð Þ ð2Þ ð2Þ 123 Geotech Geol Eng (2014) 32:1001–1015 1009 (a) (b) Fig. 11 Stress–Strain-Volume Change Behaviour of 80 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour (b) (a) (b) (a) Fig. 11 Stress–Strain-Volume Change Behaviour of 80 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour olume Change Behaviour of 80 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume Fig. 11 Stress–Strain-Volume Change Behaviour of 80 mm dmax for Salma Dam Project Material. a Stress–strain behaviour b Volume change behaviour described in detail in various references (Varadarajan and Desai 1993; Gupta 2000; Desai 2001; Abbas 2003; Varadarajan et al. 2003, 2006; Honkanadavar 2010). The procedure is briefly presented herein. 3.1.1 Elastic Parameters The elastic parameter, modulus of elasticity (initial modulus) of rockfill material, E is determined from the observed stress–strain response using the hyperbolic relationship (Kondner 1963), r1  r3 ð Þ ¼ e1 a þ be1 ð5Þ 3.1 Material Parameters ð5Þ 3.1 Material Parameters The procedure for the determination of material parameters required in the HISS model has been where, (r1 - r3) is deviator stress, e1 is axial strain, a is constant (= inverse of modulus of elasticity, E) 12 3 3 Geotech Geol Eng (2014) 32:1001–1015 1010 Fig. 13 Variation of Angle of Internal Friction with Maximum Particle Size (dmax) Fig. 13 Variation of Angle of Internal Friction with Maximum Particle Size (dmax) and b is constant (= inverse of ultimate strength, (r1 - r3)ult). Equation (5) can be rewritten as study, the value of m has been taken as -0.5. The ultimate parameters c and b can be related with angle of internal friction, / (Desai 2001) as study, the value of m has been taken as -0.5. The ultimate parameters c and b can be related with angle of internal friction, / (Desai 2001) as e1 r1  r3 ¼ a þ be1 ð6Þ ð6Þ b ¼ 1  p2=m 1 þ p2=m ð8Þ ð8Þ The values of e1/(r1 - r3) are calculated from the initial part of the stress–strain curve and are plotted against e1. The intercept of the best fit line in the transformed plot is obtained as the value of the constant a. The reciprocal of the constant a gives the modulus of elasticity of rockfill material, E. The values of e1/(r1 - r3) are calculated from the initial part of the stress–strain curve and are plotted against e1. The intercept of the best fit line in the transformed plot is obtained as the value of the constant a. The reciprocal of the constant a gives the modulus of elasticity of rockfill material, E. 3.1 Material Parameters where, p ¼ tan hC tan hE ð9Þ tan hC ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi c 1  b ð Þm q   C ¼ 2ffiffiffi 3 p sin uC 3  sin uC   ð10Þ tan hE ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi c 1 þ b ð Þ p m h i E¼ 2ffiffiffi 3 p sin uE 3 þ sin uE   ð11Þ ð9Þ The modulus of elasticity, E is expressed as a function of the confining pressure (Janbu 1963) as ð10Þ E ¼ kPa r3 Pa  n0 ð7Þ ð11Þ ð7Þ In the present analysis, triaxial compression tests are conducted and friction angle in compression (uC) has been determined for all the dmax of alluvial and quarried modeled rockfill materials. The friction angle in extension (uE) is assumed equal to the friction angle in compression i.e. uC = uE (Gupta 2000; Abbas 2003; Honkanadavar 2010). First, b is determined from Eq. (8) and then c is computed using Eq. (10) or (11) for the alluvial and quarried modeled rockfill materials tested. where, k and n 0 are the modulus number and modulus exponent of the material respectively, r3 is the confining pressure and Pa is the atmospheric pressure. To determine the modulus number, k and modulus exponent, n 0, the plots between, E/Pa and r3/Pa on log scale are made for all sizes of alluvial and quarried rockfill materials. The values of k and n 0 are determined as antilog of intercept on y-axis and slope of a best fit line respectively. The lateral strain is determined from the initial part of axial strain v/s volumetric strain curve and then Poisson’s ratio, m is determined as the ratio of lateral strain to the axial strain. 3.1.3 Phase Change Parameter The phase change parameter, n is related to the state of stress at which the material starts dilating. Therefore, the point at which dilation starts is corresponding to dev p = 0 and therefore, the phase change parameter, n can be determined as 3.1.2 Ultimate Parameters For most of the geological materials m is found to be -0.5 (Desai et al. 1986). Therefore, in the present 123 12 3 Geotech Geol Eng (2014) 32:1001–1015 1011 Table 5 Material Parameters for HISS Model Rockfill Materials dmax (mm) Elasticity Ultimate Phase Change Hardening Non-associative k n 0 m c b n a1 g1 j Renuka Dam 25 374.36 0.466 0.32 0.063 0.72 3.0 6.5 9 10-6 1.00 0.236 50 385.21 0.469 0.31 0.067 0.72 3.0 6.0x10-6 1.05 0.235 80 410.677 0.4624 0.30 0.072 0.72 3.0 5.5x10-6 1.07 0.226 Salma Dam 25 289.201 0.528 0.31 0.061 0.72 3.0 5.0x10-6 0.93 0.240 50 318.85 0.515 0.3 0.066 0.72 3.0 3.5x10-6 0.97 0.239 80 346.019 0.5082 0.28 0.071 0.72 3.0 2.0x10-6 1.03 0.238 Fig. 14 Observed and Predicted Stress-Strain-Volume Change Behaviour of 25 mm dmax for Renuka Dam Project Material n ¼ 2 h i h i ð12Þ Taking natural log on both sides of Eq. (13) gives, Table 5 Material Parameters for HISS Model Rockfill Materials dmax (mm) Elasticity Ultimate Phase Change Hardening Non-associative k n 0 m c b n a1 g1 j Renuka Dam 25 374.36 0.466 0.32 0.063 0.72 3.0 6.5 9 10-6 1.00 0.236 50 385.21 0.469 0.31 0.067 0.72 3.0 6.0x10-6 1.05 0.235 80 410.677 0.4624 0.30 0.072 0.72 3.0 5.5x10-6 1.07 0.226 Salma Dam 25 289.201 0.528 0.31 0.061 0.72 3.0 5.0x10-6 0.93 0.240 50 318.85 0.515 0.3 0.066 0.72 3.0 3.5x10-6 0.97 0.239 80 346.019 0.5082 0.28 0.071 0.72 3.0 2.0x10-6 1.03 0.238 Fig. 14 Observed and Predicted Stress-Strain-Volume Change Behaviour of 25 mm dmax for Renuka Dam Project Material Table 5 Material Parameters for HISS Model Fig. 14 Observed and Predicted Stress-Strain-Volume Change Behaviour of 25 mm dmax for Renuka Dam Project Material Taking natural log on both sides of Eq. (13) gives, n ¼ 2 1  J2D J2 1 h i h i 1 FSc ð12Þ n ¼ 2 1  J2D J2 1 h i h i 1 FSc ð12Þ ln a ð Þ ¼ ln a1 ð Þ  g1 ln n ð Þ ð14Þ ð14Þ A plot a v/s n is drawn on logarithmic scale to get a1 and g1 as antilog of intercept and slope respectively of the best fit line. The hardening parameters for all the dmax of alluvial and quarried modeled rockfill mate- rials were computed. 3.1.2 Ultimate Parameters where, J1 is first invariant of stress tensor, J2D is the second invariant of deviator stress tensor, Fs is shape function and c is the ultimate parameter. The point at which dev p = 0 is determined and n is calculated using Eq. (12). An average of all n values for different tests conducted for a dmax is taken as overall value of n for that size of rockfill material. Similarly, n value is calculated for all the dmax of alluvial and quarried modeled rockfill materials. 3.1.5 Non-associative Parameter The non-associative parameter, j in Eq. (2) is determined based on the following equation: dep v dep 11   ¼ 3 oQ oJ1  oQ or11 ð16Þ 3.1.4 Hardening Parameters ð16Þ In the present study, a is assumed as the function of n as where, de11 p = axial plastic strain increment; r11 = axial stress, and dev p = volumetric plastic strain increment. The ratio of dev p/de11 p can be obtained from a ¼ a1 ng 1 ð13Þ a ¼ a1 ng 1 ð13Þ 12 1012 Geotech Geol Eng (2014) 32:1001–1015 Fig. 15 Observed and Predicted Stress-Strain-Volume Change Behaviour of 50 mm dmax for Renuka Dam Project Material Fig. 15 Observed and Predicted Stress-Strain-Volume Change Behaviour of 50 mm dmax for Renuka Dam Project Material Fig. 16 Observed and Predicted Stress-Strain- Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material Fig. 17 Observed and Predicted Stress-Strain- Volume Change Behaviour of 25 mm dmax for Salma Dam Project Material Fig. 16 Observed and Predicted Stress-Strain- Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material Fig. 16 Observed and Predicted Stress-Strain- Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material Fig. 16 Observed and Predicted Stress-Strain- Volume Change Behaviour of 80 mm dmax for Renuka Dam Project Material Fig. 17 Observed and Predicted Stress-Strain- Volume Change Behaviour of 25 mm dmax for Salma Dam Project Material Fig. 17 Observed and Predicted Stress-Strain- Volume Change Behaviour of 25 mm dmax for Salma Dam Project Material 12 12 23 Geotech Geol Eng (2014) 32:1001–1015 1013 Fig. 18 Observed and Predicted Stress-Strain- Volume Change Behaviour of 50 mm dmax for Salma Dam Project Material Fig. 19 Observed and Predicted Stress-Strain-Volume Change Behaviour of 80 mm dmax for Salma Dam Project Material Fig. 18 Observed and Predicted Stress-Strain- Volume Change Behaviour of 50 mm dmax for Salma Dam Project Material Fig. 18 Observed and Predicted Stress-Strain- Volume Change Behaviour of 50 mm dmax for Salma Dam Project Material Fig. 19 Observed and Predicted Stress-Strain-Volume Change Behaviour of 80 mm dmax for Salma Dam Project Material the slope of the observed de11 p v/sdev presponse by choosing a point in the ultimate state. The value of aQ [from Eq. (2)] which is represented on the right- hand side of Eq. (16) can then be found as the left-hand side is now known. Using this value along with a and rv at ultimate condition, the average value of j is determined. laboratory triaxial shear tests. From the comparison, it is observed that both results match closely. 3.1.4 Hardening Parameters The observed and predicted stress–strain–volume change behaviour for both projects rockfill material is shown in Figs. 14, 15, 16, 17, 18 and 19. 4 Conclusions Following the above mentioned procedure, material parameters for both Renuka dam alluvial and Salma dam quarried rockfill materials have been determined and are presented in the Table 5. Using the determined material parameters, stress–strain–volume change behaviour for all the dmax tested with different r3 is predicted using HISS model. The predicted behaviour is compared with the observed behaviour from the Two types of modeled rockfill materials viz. alluvial from Renuka dam, India and blasted quarried from Salma dam, Afghanistan were collected and consol- idated drained triaxial tests were conducted. Stress– strain–volume change behaviour for all the dmax were studied. It is observed that the stress–strain behaviour 12 3 Geotech Geol Eng (2014) 32:1001–1015 1014 is non-linear, inelastic and stress level dependent for all the dmax of both project materials. The deviator stress and the axial strain at failure increases with increase in confining pressure for all the tested materials. It is also observed that the effect of r3 is same on both types of material. From the volume change behaviour, it is observed that the volume decreases during the initial shearing and with further shearing material experiences dilation effect. This dilation effect reduces with increase in r3 and dmax for both projects material. The shear strength parameter, angle of internal friction (/) increases with increase in dmax for alluvial rockfill material and reverse trend is observed for blasted quarried rockfill material. Desai CS, Somasundaram S, Frantziskonis G (1986) A hierar- chical approach for constitutive modelling of geologic materials. Int J Numer Anal Methods Geomech 10:225–257 Desai CS, Sharma KG, Wathugala GW, Rigby DB (1991) Implementation of hierarchical single surface d0 and d1, models in finite element procedure. Int J Numer Anal Methods Geomech 15:649–680 Desai CS, Samtani NC, Vulliet L (1995a) Constitutive modeling and analysis of creep slopes. Int J Rock Mech Min Sci 32(8):403A–404A Desai CS, Samtani NC, Vulliet L (1995b) Constitutive modeling and analysis of creep slopes. J Geotech Eng, ASCE 121:43–56 Gupta AK (2000) Constitutive Modeling of Rockfill Material, Ph.D. Thesis, I.I.T. Delhi Honkanadavar NP (2010), Testing and Modeling the Behaviour of Modeled and Prototype Rockfill Materials, Ph.D. Thesis, I.I.T.Delhi Rockfill materials have been characterised by using heirarchical single surface (HISS) model based on elasto-plasticity. Stress–strain–volume change behav- iour has ben predicted for all the dmax of both alluvial and quarried rockfill materials. The predicted and observed (laboratory test results) stress–strain–vol- ume change results were compared. 4 Conclusions From the com- parison, it is observed that both results match closely. Hence, it is suggested that the HISS model can be used successfully to characterise both alluvial and blasted quarried rockfill materials. Honkanadavar NP, Sharma KG (2011), Prediction of shear strength parameter for prototype quarried rockfill materials using index properties, Indian Geotechnical Conference, IGC-2011, Kochi Honkanadavar NP, Sharma KG (2012a),Testing and modeling the behaviour of alluvial rockfill material. Indian Geotech Conf, IGC-2012, Vol-II, pp 131–134 Honkanadavar NP, Sharma KG (2013)’’Testing and modeling the behaviour of riverbed and quarried rockfill materials. Accepted for publication in International Journal of Geo- mechanics, ASCE Honkanadavar NP, Gupta SL, Ratnam M (2012) Effect of par- ticle size and confining pressure on shear strength param- eter of rockfill materials. Int J Adv Civil Eng Archit I(I):49–63 Acknowledgments Authors would like to thank the staff of rockfill division, CSMRS for their help during the testing. Thanks to the project authorities of Renuka dam and Salma dam for providing the modeled rockfill materials for carrying out this research work. Kondner, R.L. (1963), ‘‘Hyperbolic stress–strain response, cohesive soils, J SMFE, ASCE, 89, SM1, pp 115–143 Lowe J (1964) Shear strength of coarse embankment dam materials. Congr Large Dams 3:745–761 Marachi ND, Chan CK, Seed HB Duncan JM (1969), Strength and Deformation Characteristics of Rockfill Materials, Report No. TE 69(5), Civil Engineering Department, University of California, Berkeley, USA Open Access This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. Marsal RJ (1967) Large Scale Testing of Rockfill Materials. J Soil Mech Found Div ASCE 93(2):27–43 Najjar YM, Zaman MM, Tabbaa R (1994) Constitutive mod- elling of sand: a comparative study. In:Proceedings of the eight international conference on computer methods and advances in geomechanics, Morgantown, West Virginia, May 22–28, 1994, pp 641–646 References Abbas SM (2003) Testing and Modeling the Behaviour of Riverbed and Quarried Rockfill Materials, Ph. D. Thesis, I.I.T. Delhi Varadarajan A, Desai CS (1987) A constitutive model for drained behaviour of jamuna sand. Indian Geotech J 1(14):272–290 Desai CS (2001) Mechanics of materials and interfaces—the disturbed state concept. CRC Press, Florida Varadarajan A, Desai CS (1993) Material constants of a con- stitutive model determination and use. Indian Geotech J 23(3):291–313 Desai CS, Siriwardhane HJ (1980) A concept for correction function to account for non-associative characteristics of geologic media. Int J Numer Anal Methods Geomech 4:377–387 Varadarajan A, Sharma KG Abbas SM (2006) Constitutive model for rockfill materials and determination of material constants. Int J Geomech @ ASCE/July/August 2006. pp 226–237 Desai CS, Ugai K (1996) Application of non-associative model for geologic materials for active earth pressure experiment. Int J Rock Mech Min Sci 33(2):88A Varadarajan A, Sharma KG Soni KM (1994) Modelling of reinforced sand using hierarchical model. Proc 8th Int Conf 12 3 Geotech Geol Eng (2014) 32:1001–1015 1015 Comput Methods Adv in Geo-Mech, pp 707–712 Comput Methods Adv in Geo-Mech, pp 707–712 Varadarajan A, Sharma KG, Venkatachalam K, Gupta AK (2003) ‘‘Testing and modeling two rockfill materials. J Geotech Geoenv Eng ASCE 129(3):206–218 Varadarajan A, Sharma KG, Venkatachalam K, Gupta AK (1997) Constitutive modelling of a rockfill material using HISS model. Proc IGC-97 Vadodara 1:153–156 Venkatachalam K (1993) Prediction of mechanical behaviour of rockfill materials, Ph.D. Thesis, I.I.T. Delhi HISS model. Proc IGC-97 Vadodara 1:153–156 Varadarajan A, Sharma KG, Venkatachalam K, Gupta AK (1999) Constitutive modelling of rockfill materials, Proc Fourth Int Conf Const Laws Eng Mater. Rensselaer Poly- technic Institute, Troy Xiao Y, Liu HL, Zhu JG, Shi WC (2011a) Dilatancy equation of rockfill material under the tru triaxial stress condition. Sci China Tech Sci 54(S1):175–184 Xiao Y, Liu HL, Zhu JG, Shi WC (2011b) Modeling and behaviours of rockfill materials in three-dimensional stress space. Sci China Tech Sci 55(10):2877–2892 Varadarajan A, Sharma KG, Venkatachalam K, Abbas SM (2002a) Constitutive modeling of rockfill materials from tehri dam, Uttaranchal. Proc. IGC2002 Allahabad, India 1:592–595 Xiao Y, Liu HL, Zhu JG, Shi WC (2012) A 3D bounding surface model for rockfill materials. Sci China Tech Sci 54(11):2904–2915 Varadarajan A, Sharma KG, Abbas SM, Venkatachalam K (2002b), ‘‘Testing and Modeling the Behaviour of Two Rockfill Materials, J Geotech Geoenv Eng, ASCE, June (2003). pp 206–218 123 123
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Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan
ZooKeys
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Revision ZooKeys 241: 1–19 (2012) doi: 10.3897/zookeys.241.3175 www.zookeys.org Revision ZooKeys 241: 1–19 (2012) doi: 10.3897/zookeys.241.3175 www.zookeys.org chneria (Bryozoa, Ch Research article Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan Masato Hirose1 1 National Museum of Nature and Science Tokyo, 4-1-1, Amakubo, Tsukuba, Ibaraki 305-0005, Japan 1 National Museum of Nature and Science Tokyo, 4-1-1, Amakubo, Tsukuba, Ibaraki 305-0005, Japan Corresponding author: Masato Hirose (mhirose64@gmail.com) Corresponding author: Masato Hirose (mhirose64@gmail.com) Academic editor: L. van Ofwegen  |  Received 2 April 2012  |  Accepted 29 October 2012  |  Published 12 November 2012 Citation: Hirose M (2012) Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan. ZooKeys 241: 1–19. doi: 10.3897/zookeys.241.3175 Abstract Buchneria dofleini (Buchner, 1924), type species of Buchneria Harmer, 1957, was first described from material collected in 1904–1905 from Sagami Bay, Japan, but the type specimens had not been reex- amined since the original description. In this study, I examined specimens of Buchneria from historical collections and material recently collected near Akkeshi, Hokkaido, Japan. Three Buchneria species were detected, two from Sagami Bay that Ortmann (1890) had placed in Escharoides, and one from Akkeshi that Androsova (1958) had described as Porella variabilis. I concluded that Buchneria dofleini is a junior synonym of Escharoides teres Ortmann, 1890; selected a lectotype for E. teres among Ortmann’s syntypes; and established the new combination Buchneria teres (Ortmann, 1890), which becomes the type species of Buchneria. I also established the new combination Buchneria rhomboidalis (Ortmann, 1890) and selected a lectotype among Ortmann’s syntypes. Porella variabilis is transferred to Buchneria establishing the new combination Buchneria variabilis (Androsova, 1958). Here the three new combinations are redescribed and a key to the Japanese Buchneria species is provided. Finally, I transferred Buchneria to Bryocryptellidae on the basis of ovicell and orifice morphology. Therefore, Buchneria now includes a total of three species; B. sinuata Harmer, 1957, a species from Indonesia that has hitherto been placed in this genus, is almost certainly not congeneric with other Buchneria. As far as is now known, Buchneria is endemic to northern Japan and the northern Sea of Japan. y Buchneria dofleini, Buchneria teres, Buchneria rhomboidalis, Buchneria variabilis, new combination, syno- nymy, distribution, Sagami Bay, Akkeshi Copyright Masato Hirose. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Introduction Harmer (1957) introduced the cheilostome bryozoan genus Buchneria for species with erect colonies, and chose the deep sea species Palmicellaria dofleini as type, which was described by Buchner (1924) from Sagami Bay, Japan. According to Harmer’s de- scription, zooids in species of Buchneria have the proximal margin of the orifice with a broad sinus or nearly straight, with a small suboral avicularium at the edge of the peristome, and have only a few pores in the frontal shield. These characters, however, also match Escharoides teres and Escharoides rhomboidalis, both described by Ortmann (1890) from Sagami Bay, although Ortmann’s (1890) limited descriptions and simpli- fied illustrations are inadequate for taxonomic assessment.h i The status of Buchneria has not been evaluated subsequent to Harmer (1957). In this study, I reexamined type specimens established by Buchner (1924) and Ortmann (1890) for species of Buchneria and morphologically similar genera. I examined rel- evant material collected in Japan over the past approximately 130 years, as well as material obtained through my own collecting efforts. I review, describe, and illustrate the known species of Buchneria. Material examined I examined specimens from Sagami Bay and surrounding areas collected by Ludwig Döderlein (1880–1881), Franz Doflein and Karl Haberer (1904–1905), Emperor Showa (1918–1971), and most recently by the National Museum of Nature and Sci- ence Tokyo (2001–2005); see National Museum of Nature and Science (2007), Hirose (2010), and Spencer Jones et al. (2011) for historical overviews. This material is housed in Musée Zoologique Strasbourg (MZS), Zoologische Staatssammlung München (ZSM), Senckenberg Forschungsinstitut und Naturmuseum in Frankfurt, Germany (SMF; material on loan there from ZSM), and the National Museum of Nature and Science Tokyo (NMST), now located in Tsukuba (see Supplementary Table 1).h The author collected additional specimens from Sagami Bay by dredge from RV Tansei-maru (Japan Agency for Marine-Earth Science and Technology, JAMSTEC) and research boat Rinkai-maru (Misaki Marine Biological Station, The University of Tokyo) in November 2007 and February 2012, and outside Akkeshi Bay, Hokkaido, in July 2010 and 2011, by dredge from research boat Misago-maru (Akkeshi Marine Station, Hokkaido University) (Fig. 1). Keywordsl Buchneria dofleini, Buchneria teres, Buchneria rhomboidalis, Buchneria variabilis, new combination, syno- nymy, distribution, Sagami Bay, Akkeshi Copyright Masato Hirose. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 2 Masato Hirose / ZooKeys 241: 1–19 (2012) 2 Masato Hirose / ZooKeys 241: 1–19 (2012) 4 Masato Hirose / ZooKeys 241: 1–19 (2012) measurements were n = 4–82, generally from more than one colony. Abbreviations used for measurements are as follows; ZL, zooid length; ZW, zooid width; OrL, orifice length; OrW, orifice width; AvL, suboral avicularium length; AvW, suboral avicu- larium width; OvL, ovicell length; OvW, ovicell width. Genus Buchneria Harmer, 1957 http://species-id.net/wiki/Buchneria Genus Buchneria Harmer, 1957 http://species-id.net/wiki/Buchneria Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Taxonomy Order Cheilostomata Busk, 1852 Suborder Neocheilostomina d’Hondt, 1985 Infraorder Ascophorina Levinsen, 1909 Superfamily Lepralielloidea Vigneaux, 1949 Family Bryocryptellidae Vigneaux, 1949 Preparation and observation of specimens Specimens were observed by light microscope and scanning electron microscope (SEM). For SEM observation, part of each specimen was removed, soaked in a sodium Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 3 Figure 1. Map showing the areas in Japan where species of Buchneria were collected. Figure 1. Map showing the areas in Japan where species of Buchneria were collected. hypochlorite solution to remove the soft tissue, rinsed in water, air dried, and mounted with double-sided adhesive tape or silver paste on an aluminum SEM stub. At Hok- kaido University, mounted specimens were coated with Au in a Hitachi E-1030 sput- ter-coater and observed with a Hitachi S-3000N SEM at 15 kV accelerating voltage. At the SMF, specimens were coated with Pt-Pd and observed with a CamScan SEM. At ZSM, specimens were coated with Au in a POLARON SEM Coating System and observed with a LEO 1430VP SEM at 15 kV accelerating voltage. Fragments removed from specimens in the various collections, prepared and examined by SEM, and sub- sequently deposited in NMST are indicated in the text by the designation ‘NSMT Te’ (see Supplementary Table 1). Measurements were taken from SEM images with ImageJ 1.37v software (Image Processing and Analysis in Java, Wayne Rasband, National Institutes of Health, USA; http://rsb.info.nih.gov/ij/). Measurements in the text are presented in millimeters, as ranges followed in parentheses by the mean and standard deviation. Sample sizes for Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Diagnosis. Colony erect, rigid, dichotomously or irregularly branching: branches cylindrical, flattened, or plate-like, fan shaped. Zooidal frontal shield uniformly tessel- lated, with a few areolar pores near margin or offset centrally in secondarily calcified wall. Orifice deeply immersed, without teeth on distal periphery, without lyrula or condyles, slightly concave or straight proximally; oral spines absent. Secondary orifice at colony surface cormidial, formed by contributions of secondary calcification from distal and lateral zooids. Suboral avicularium lies at proximal margin of secondary ori- fice, directed proximally or laterally, sometimes enlarged and occupying about half of frontal shield; small, conical tooth associated with avicularium projecting into second- ary orifice (Fig. 2). Mandible of the suboral avicularium semicircular or spatulate, but never acute. Vicarious and other frontal avicularia absent. Ovicell globose, acleithral, and is produced by the distal zooid (Fig. 3). Both the endooecium and ectooecium are calcified. Endooecium is completely calcified, whereas ectooecium is not completely covering the endooecium (Fig. 3A, B). Immediately after formation, the ectooecium is then partially covered by the secondary calcification that is coming from the distal and neighbour zooids (Fig. 3B). Finally, the secondary calcification covers most of the ectooecium in the old parts of the colony, but a small area of proximal margin remains uncovered (Fig. 3C). Small basal pore chambers present. Remarks. Harmer (1957) defined Buchneria as follows: colony erect, not jointed; large spatulate avicularia present; zooids with a “sinuate” or nearly straight proximal margin of the orifice (the term ‘sinuate’ appears to be misapplied to the evenly con- cave proximal margin in Buchneria sinuata; perhaps Harmer intended the meaning as ‘having a sinus’); small, acute suboral or lateral avicularia on the edge of the secondary orifice; few frontal pores; and a hyperstomial ovicell with an imperforate central tabula. Remarks. Harmer (1957) defined Buchneria as follows: colony erect, not jointed; large spatulate avicularia present; zooids with a “sinuate” or nearly straight proximal margin of the orifice (the term ‘sinuate’ appears to be misapplied to the evenly con- cave proximal margin in Buchneria sinuata; perhaps Harmer intended the meaning as ‘having a sinus’); small, acute suboral or lateral avicularia on the edge of the secondary orifice; few frontal pores; and a hyperstomial ovicell with an imperforate central tabula. Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 5 5 Figure 2. Orifices of three Buchneria species showing the small tooth distal to the suboral avicularium. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). A Buchneria teres B Buchneria rhomboidalis C Buchneria variabilis. Figure 2. Orifices of three Buchneria species showing the small tooth distal to the suboral avicularium. A Buchneria teres B Buchneria rhomboidalis C Buchneria variabilis. Figure 3. Ovicells of Buchneria teres showing various stages of development. A Younger stage ooecium showing smooth surface of endooecium and ectooecium with less secondary calcification B Ooecium started covered by tessellated secondary calcification from neighboring zooids C Ooecium almost cov- ered by the secondary calcification with showing endooecium through the small proximal membranous window at ectooecium. Ec, ectooecium; En, endooecium; Sc, secondary calcification. Arrows indicate the proximal membranous window. Figure 3. Ovicells of Buchneria teres showing various stages of development. A Younger stage ooecium showing smooth surface of endooecium and ectooecium with less secondary calcification B Ooecium started covered by tessellated secondary calcification from neighboring zooids C Ooecium almost cov- ered by the secondary calcification with showing endooecium through the small proximal membranous window at ectooecium. Ec, ectooecium; En, endooecium; Sc, secondary calcification. Arrows indicate the proximal membranous window. His generic diagnosis, however, largely derives from Buchneria sinuata Harmer, 1957 from Indonesia. This species is similar to the three Buchneria species treated herein in having erect colony form, few frontal or marginal pores, and a deeply immersed prima- ry orifice. However, it differs substantially from them in having large, spatulate frontal avicularia; hyperstomial ovicells with an imperforate central tabula lacking secondary calcification; and a laterally placed, acute oral avicularium (Harmer, 1957: plate LIV, fig. 19). Buchneria sinuata, therefore, has currently been thougth to belong in another genus, perhaps Osthimosia Jullien, 1888 (Gordon, 1984). Gordon (1984) noted sev- eral similarities between Osthimosia virgula and nominal B. sinuata (e.g., broad orificial sinus, a lateral-oral avicularium on peristome, and spatulate frontal avicularia), and His generic diagnosis, however, largely derives from Buchneria sinuata Harmer, 1957 from Indonesia. This species is similar to the three Buchneria species treated herein in having erect colony form, few frontal or marginal pores, and a deeply immersed prima- ry orifice. However, it differs substantially from them in having large, spatulate frontal avicularia; hyperstomial ovicells with an imperforate central tabula lacking secondary calcification; and a laterally placed, acute oral avicularium (Harmer, 1957: plate LIV, fig. 19). Buchneria sinuata, therefore, has currently been thougth to belong in another genus, perhaps Osthimosia Jullien, 1888 (Gordon, 1984). Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Gordon (1984) noted sev- eral similarities between Osthimosia virgula and nominal B. sinuata (e.g., broad orificial sinus, a lateral-oral avicularium on peristome, and spatulate frontal avicularia), and 6 Masato Hirose / ZooKeys 241: 1–19 (2012) 6 suggested the two species may be congeneric. Subsequently, Gordon (1989) observed and illustrated Japanese material of Buchneria present in the Natural History Museum London (NHMUK), and elucidated the umbonuloid frontal shield; he concluded Bu- chneria cannot be grouped together with Osthimosia and other lepraliomorphs. Unfor- tunately, I have never had a chance to check the type material of Harmer’s B. sinuata, which is not in NHMUK (Mary Spencer Jones, pers. comm. 11 May 2012) and both institutes Zoological Museum Amsterdam (ZMA) and Naturalis Biodiversity Center in Leiden (Elly Beglinger, pers. comm. 19 September 2012). Although I have not checked the type material, I exclude Harmer’s B. sinuata from the description of the genus in this paper based on the significant differences with the type species of the genus; B. sinuata is also different from other Buchneria species in mainly imperforate frontal shield, small colony size, and preference of unstable substrate which is unusual for Buchneria species. The status of B. sinuata is still unclear and should be clarified in future work. With the removal of nominal B. sinuata from Buchneria, the cormidial orifice and the rounded mandible of suboral avicularia may be considered diagnostic characters for Buchneria. Buchner (1924) described large frontal avicularia, but these are enlarged suboral avicularia; therefore, absence of a large frontal avicularium may also be considered diagnostic for Buchneria. g Gordon (1989) regarded Buchneria close to Celleporaria in Lepraliellidae, based on the similarities between the type species of both genera in the umbonuloid and imper- forate frontal shield with marginal areolar pores, broad orifice, and suboral aviculari- um. However, the ovicell of Buchneria is different from that of Lepraliellidae in having broader proximal window and deeper ooecium, and is more similar to that of Palmiske- nea Bishop & Hayward, 1989 in Bryocryptellidae with a few small foramina close to the proximal margin. Buchneria also resembles Palmiskenea in the frontal shield having only marginal areolar pores, but differs from the latter in the orifice without condyles and in polymorphic avicularia. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Buchneria resembles Marguetta Jullien, 1903 in hav- ing only marginal pores, an ovicell with a few small pores, and oval suboral avicularia, but differs from the latter in lacking frontal avicularia on margin of the frontal shield. Buchneria also resembles Porella Gray, 1848 and Porelloides Hayward, 1979 in having only marginal pores, an ovicell without or with a few small pores, and suboral avicularia, but differs from the latter two genera in lacking lyrula and condyles. Although some species of Porella also lack a lyrula, and species of Porelloides normally lack condyles, a small tooth on the distal margin of the suboral avicularium is characteristic of Buchne- ria. Considering the similarities of ovicell and orifice morphology between Buchneria and the four bryocryptellid genera, Porella, Palmiskenea, Marguetta and Porelloides, I conclude Buchneria is much better placed in Bryocryptellidae rather than Lepraliellidae. Harmer (1957) suggested that Haswellia auriculata Busk, 1884 be placed in Bu- chneria, on the basis of orifice morphology and the small lateral avicularia on the edge of the peristome. He also suggested that the species H. auriculata and Myriozoum marionense Busk, 1884 as described by Calvet (in Jullien and Calvet 1903) represent a single species referable to Buchneria, on the basis of very few frontal pores; a large, spatulate frontal avicularium; the form of the peristome with small avicularia; and im- Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 7 mersed ovicells (Harmer, 1957). However, H. auriculata is currently regarded as a jun- ior synonym of Galeopsis pentagonus (d’Orbigny, 1842), and the specimen described as M. marionense in Jullien and Calvet (1903) is also considered as a species of Galeopsis. Excluding nominal B. sinuata, Buchneria presently contains three species, which I redescribe here. Buchneria teres (Ortmann, 1890), comb. n. http://species-id.net/wiki/Buchneria_teres Figures 4, 5, 6 Escharoides teres Ortmann, 1890, 43, pl. 3, fig. 21; type locality, Sagami Bay. Palmicellaria ortmanni Buchner, 1924, 210, fig. V; mentioned only in a caption to a text figure and presumably a nomen nudum; see Harmer (1957: 876). Palmicellaria dofleini Buchner, 1924, 210, figs. F, V, pl. 17, figs. 9−12. Buchneria dofleini: Harmer 1957, 876, pl. 17, figs. 9−12; Gordon 1989, 258, figs. 17−20. Material examined. Lectotype. Branched colony (MZS 36-2), collected by L. Döder- lein, 1882, Sagami Bay. Paralectotype. Branched colony (MZS 36-1, 36-3; NSMT Te- 738), collected by L. Döderlein, 1882, Sagami Bay. Other material examined. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Fragment of colony ZSM 20043001, collected by F. Doflein, 17 October 1904, entrance of Tokyo Bay, 600 m depth; fragment of colony ZSM 20100261 collected by F. Doflein, 1904−1905, Sagami Bay; single small living colony on pebble and several fragments of living colonies (NSMT TeS-3, TeS-2), collected by NSMT from RV Shinyo-maru, 24 October 2003, Okinose, Sagami Bay (34°58.80'N, 139°31.50'E to 34°59.20'N, 139°31.20'E), 900−950 m depth, by dredge; fragments of colonies (NSMT TeS-4), collected by NSMT from research boat Rinkai-maru, 16 March 2001, SW of Hay- ama, Sagami Bay (35°11.46'N, 139°28.71'E to 35°11.64'N, 139°28.14'E), 432−580 m depth, by dredge; several living and dead colonies (NSMT TeS-5 to TeS-12) on dead Conchocele bisecta (Conrad, 1849) shells, collected by NSMT from RV Tansei-maru, 24 November 2007, ENE of Hatsushima, Sagami Bay (35°03.41'N, 139°12.55'E to 35°02.73'N, 139°13.73'E), 563−756 m depth, by beam trawl; single small dead colo- ny on pebble (NSMT Te-876), collected by Nagai, 24 April 1997, SW of Shionomi- saki, Wakayama Prefecture (33°24.91'N, 135°38.69'E to 33°24.95'N, 135°38.12'E), 500 m depth, by dredge. Measurements. ZL, 0.595−1.334 (0.978±0.160); ZW, 0.214−0.840 (0.450±0.133); n=65. OrL, 0.131−0.208 (0.171±0.021); OrW, 0.123−0.219 (0.187±0.018); n=32. AvL, 0.078−0.198 (0.110±0.017); AvW, 0.055−0.148 (0.086±0.016); n=82. OvL, 0.205−0.391 (0.311±0.049); OvW, 0.286−0.439 (0.365±0.043); n=29. Additional measurements: large suboral avicularium (LAv) length, 0.619−0.766 (0.682±0.076); LAv width, 0.398−0.453 (0.426±0.027), n=3. Description. Colony erect, rigid, dichotomously branching, widely spreading, antler-like, terminal branches slender. Basal part of colony composed of both autozoo- Description. Colony erect, rigid, dichotomously branching, widely spreading, antler-like, terminal branches slender. Basal part of colony composed of both autozoo- Masato Hirose / ZooKeys 241: 1–19 (2012) 8 y ids and kenozooids. Branches cylindrical, 1.39–4.76 mm wide (2.77±0.85 mm; n=25), with zooids opening all around, four or five zooids across in half-view (Fig. 4A, B). A id b l l i i ll li d i l i d Figure 4. Buchneria teres comb. n. A Lectotype (MZS 36-2) and paralectotype (MZS 36-1) B Colonies on dead shells of Conchocele bisecta, NSMT TeS-8 and 10 C Large suboral avicularium with a semicircular mandible, NSMT TeS-2 D Kenozooidal base of the colony, NSMT TeS-8. Figure 4. Buchneria teres comb. n. A Lectotype (MZS 36-2) and paralectotype (MZS 36-1) B Colonies on dead shells of Conchocele bisecta, NSMT TeS-8 and 10 C Large suboral avicularium with a semicircular Figure 4. Buchneria teres comb. n. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). A Lectotype (MZS 36-2) and paralectotype (MZS 36-1) B Colonies on dead shells of Conchocele bisecta, NSMT TeS-8 and 10 C Large suboral avicularium with a semicircular mandible, NSMT TeS-2 D Kenozooidal base of the colony, NSMT TeS-8. ids and kenozooids. Branches cylindrical, 1.39–4.76 mm wide (2.77±0.85 mm; n=25), with zooids opening all around, four or five zooids across in half-view (Fig. 4A, B). Autozooids subrectangular to oval, tapering proximally, cylindrical in younger ends of branches, arranged in quincunx; zooidal borders indistinct. Frontal shield convex, entirely tessellated with minute depressions, with two to six areolar pores offset from margin (Fig. 5A, B). Orifice (Fig. 5C) deeply immersed, elongated semicircular, about as wide as long, slightly concave proximally; lyrula and condyles absent. Oral spines 9 Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 9 ure 5. Buchneria teres comb. n., scanning electron micrographs. A Part of a branch showing ds with few frontal pores, NSMT TeS-2 B Younger part of a paralectotype branch showing r r zooids and semicircular ovicells, NSMT Te-738 (original MZS 36-3) C Orifice without lyr dyles, NSMT TeS-6 D Autozooid (right) with a developing peristomial labium of an intramura MT TeS-3 E Ovicellate zooids with well-developed peristomial labia, ZSM 20100261 F Large m at a branch bifurcation, NSMT TeS-2 G Zooids with young ovicells, NSMT TeS-6 H Oo y covered by secondary calcification from surrounding zooids, ZSM 20100261. Figure 5. Buchneria teres comb. n., scanning electron micrographs. A Part of a branch showing auto- zooids with few frontal pores, NSMT TeS-2 B Younger part of a paralectotype branch showing rectan- gular zooids and semicircular ovicells, NSMT Te-738 (original MZS 36-3) C Orifice without lyrula or condyles, NSMT TeS-6 D Autozooid (right) with a developing peristomial labium of an intramural bud, NSMT TeS-3 E Ovicellate zooids with well-developed peristomial labia, ZSM 20100261 F Large avicu- larium at a branch bifurcation, NSMT TeS-2 G Zooids with young ovicells, NSMT TeS-6 H Ooecium partly covered by secondary calcification from surrounding zooids, ZSM 20100261. Masato Hirose / ZooKeys 241: 1–19 (2012) 10 Figure 6. Buchneria teres comb. n., suboral avicularia. A Two different sizes of suboral avicularia in adja- cent zooids, ZSM 20043001 B A large, projecting suboral avicularium, NSMT TeS-2 C A large suboral avicularium appearing offset to the center of the frontal shield, NSMT TeS-2. Figure 6. Buchneria teres comb. n., suboral avicularia. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). A Two different sizes of suboral avicularia in adja- cent zooids, ZSM 20043001 B A large, projecting suboral avicularium, NSMT TeS-2 C A large suboral avicularium appearing offset to the center of the frontal shield, NSMT TeS-2. lacking. Secondary orifice cormidial, bounded by contributions of secondary calcifica- tion from distal and lateral zooids, with suture lines often evident between the sectors; secondary orifice roughly oval in young zooids, complex in mature zooids, with subo- ral avicularium offset to one side and a sharp, raised flattened peristomial flange on the other, often with a sinus between the two (Fig. 5D, E). Suboral avicularium lies on peristome periphery; small, circular, with complete pivot; semicircular mandible directed proximolaterally (Fig. 5D, H); orificial side of rostrum with a rounded-trian- gular tooth or flange (Fig. 5E). Zooids commonly have the small suboral avicularium replaced by a larger (Fig. 6A) or much larger, hypertrophied oval (Fig. 6B) avicularium (Fig. 6A, B), with the latter type sometimes displaced proximally toward the center of the frontal shield (Fig. 4C, 6C). Another type of large avicularium occurs rarely at branch bifurcations (Fig. 5F), appearing almost as a crack in the bifurcation; twice as wide as long, 0.181 mm long by 0.373 mm wide (n=1). Interzooidal kenozooids lack- ing orifice are interspersed with autozooids on branches (Fig. 5A), but are often much more numerous on side of branch facing inward toward the colony axis than on outer side; kenozooids encircle the base of colony (Fig. 4D). Ovicell (Fig. 5B, G, H) glo- bose, recumbent on distal zooid, roughly as wide as long when fully formed; ooecium smooth, proximal margin slightly curved, ectooecium is not completely covering the endooecium, leaving a large central membranous foramina and small proximal mem- branous window (Fig. 3A, B). Ectooecium is partially covered by tessellated secondary calcification from neighboring zooids with age (Fig. 5H). The proximal margin with the central pseudopore remains uncovered in the old parts of the colony (Fig. 3C).f Distribution. Sagami Bay, Sagami Sea, Tokyo Bay, and off Kii Peninsula, at depths of 432–950 m. The collecting depth of the specimen (1921.11.7.9.) in NHMUK is 250–330 fathoms, which means 457–603 m; therefore, the depth given in Harmer (1957) is wrong and should be in feet.i Remarks. Ortmann (1890) first described Buchneria teres (as Escharoides teres) based on Döderlein’s specimens from eastern Sagami Bay; these specimens had not been reexamined until this study. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Buchner (1924) subsequently described B. dofleini Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 11 (as Palmicellaria dofleini) from Doflein’s Sagami Bay specimens. Although Buchner’s type specimen of B. dofleini was lost during WWII, I found other specimens he identi- fied as this species in the Doflein collection at ZSM. In comparing these specimens with Ortmann’s syntypes of E. teres, I found no diagnostic differences between the two; Buchner’s specimens are simply the distal younger part of branches of E. teres. I thus consider Buchneria dofleini as a junior synonym of E. teres, which accordingly be- comes the type species of Buchneria. Buchner (1924) reported large frontal avicularia in his species, but these are enlarged suboral avicularia. Although syntypes of B. teres in the Döderlein collection lack the colony base, I found an entirely kenozooidal colony base in complete colonies recently collected from Sagami Bay (Fig. 4D). Buchneria rhomboidalis (Ortmann, 1890), comb. n. http://species-id.net/wiki/Buchneria_rhomboidalis Figures 7, 8 Escharoides rhomboidalis Ortmann, 1890, 44, pl. 3, fig. 22; type locality, eastern Sagami Bay. Material examined. Lectotype. MZS 37-2 (NSMT Te-737), branched colony, col- lected by L. Döderlein, 1882, Sagami Bay. Paralectotype. MZS 37-1, branched colony, collected by L. Döderlein, 1882, Sagami Bay, 370 m depth. Other material examined. NSMT-Bry R256, Emperor Showa Collection, collected 8 February 1967, 5 km SW of Jogashima, Sagami Bay, 250–400 m depth; NSMT-Bry R267, Emperor Showa Col- lection, collected 18 March 1968, 4 km WSW of Jogashima, Sagami Bay, 200−220 m depth; NSMT TeS-1, coll. 14 May 2004, west of Ōshima, Sagami Sea (34°40.95'N, 139°17.92'E to 34°40.68'N, 139°18.22'E), 220−277 m depth, beam trawl, RV Tansei- maru; colony (NSMT Te-799), collected by H. Kohtsuka from research boat Rinkai- maru, 10 January 2012, SW of Jogashima, Sagami Bay (35°06.101'N, 139°34.284'E to 35°05.684'N, 139°34.061'E), 218–318 m depth; fragments of colonies (NSMT Te- 796, Te-797), collected by M. Hirose from research boat Rinkai-maru, 24 February 2012, WSW of Jogashima, Sagami Bay (35°07.301'N, 139°33.365'E to 35°07.327'N, 139°32.978'E), 300–493 m depth. Material examined. Lectotype. MZS 37-2 (NSMT Te-737), branched colony, col- lected by L. Döderlein, 1882, Sagami Bay. Paralectotype. MZS 37-1, branched colony, collected by L. Döderlein, 1882, Sagami Bay, 370 m depth. Other material examined. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). NSMT-Bry R256, Emperor Showa Collection, collected 8 February 1967, 5 km SW of Jogashima, Sagami Bay, 250–400 m depth; NSMT-Bry R267, Emperor Showa Col- lection, collected 18 March 1968, 4 km WSW of Jogashima, Sagami Bay, 200−220 m depth; NSMT TeS-1, coll. 14 May 2004, west of Ōshima, Sagami Sea (34°40.95'N, 139°17.92'E to 34°40.68'N, 139°18.22'E), 220−277 m depth, beam trawl, RV Tansei- maru; colony (NSMT Te-799), collected by H. Kohtsuka from research boat Rinkai- maru, 10 January 2012, SW of Jogashima, Sagami Bay (35°06.101'N, 139°34.284'E to 35°05.684'N, 139°34.061'E), 218–318 m depth; fragments of colonies (NSMT Te- 796, Te-797), collected by M. Hirose from research boat Rinkai-maru, 24 February 2012, WSW of Jogashima, Sagami Bay (35°07.301'N, 139°33.365'E to 35°07.327'N, 139°32.978'E), 300–493 m depth. p Measurements. ZL, 0.767−1.150 (0.948±0.100); ZW, 0.468−1.050 (0.735±0.116); n=32. OrL, 0.152−0.211 (0.177±0.019); OrW, 0.189−0.245 (0.222±0.023); n=14. AvL, 0.106−0.271 (0.171±0.034); AvW, 0.096−0.193 (0.144±0.024); n=28. p Measurements. ZL, 0.767−1.150 (0.948±0.100); ZW, 0.468−1.050 (0.735±0.116); n=32. OrL, 0.152−0.211 (0.177±0.019); OrW, 0.189−0.245 (0.222±0.023); n=14. AvL, 0.106−0.271 (0.171±0.034); AvW, 0.096−0.193 (0.144±0.024); n=28. Description. Colony erect, rigid, dichotomously branching, widely spreading (Fig. 7A). Branches flattened, multiserial, with zooids opening all around; 2.33−6.34 mm wide (3.34±0.88 mm, n=25), five to nine zooids across (Fig. 7B). Autozooids rhomboi- dal, arranged in quincunx (Fig. 7B), zooidal borders indistinct. Frontal shield convex, entirely tessellated with minute depressions, with two to four small areolar pores (Fig. 8A, B) offset from margin. Orifice subcircular, about as wide as long, smooth distally, proximal margin without sinus; lyrula and condyles absent (Fig. 8C). No oral spines. Description. Colony erect, rigid, dichotomously branching, widely spreading (Fig. 7A). Branches flattened, multiserial, with zooids opening all around; 2.33−6.34 mm wide (3.34±0.88 mm, n=25), five to nine zooids across (Fig. 7B). Autozooids rhomboi- dal, arranged in quincunx (Fig. 7B), zooidal borders indistinct. Frontal shield convex, entirely tessellated with minute depressions, with two to four small areolar pores (Fig. 8A, B) offset from margin. Orifice subcircular, about as wide as long, smooth distally, proximal margin without sinus; lyrula and condyles absent (Fig. 8C). No oral spines. Masato Hirose / ZooKeys 241: 1–19 (2012) 12 Figure 7. Buchneria rhomboidalis comb. n. A Lectotype in the Döderlein collection, MZS 37-2 B En- largement of a branch of the lectotype C Enlargement of an orifice showing the proximal margin of the ooecium, NSMT Te-796. Figure 7. Buchneria rhomboidalis comb. n. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). A Lectotype in the Döderlein collection, MZS 37-2 B En- largement of a branch of the lectotype C Enlargement of an orifice showing the proximal margin of the ooecium, NSMT Te-796. Figure 8. Buchneria rhomboidalis comb. n., scanning electron micrographs. A Part of the lectotyp NSMT Te-737 (original MZS 37-2) B Specimen NSMT-Bry R256, showing rhomboidal autozooi with few frontal pores C Orifice with a round suboral avicularium, NSMT-Bry R267 D Suboral avic aria, each with a small, conical distal tooth, NSMT-Bry R267 E Autozooids, showing the slightly projec ng rostrum of the suboral avicularia, NSMT-Bry R267 F Kenozooids interspersed with autozooids at t base of the colony, NSMT TeS-1. Figure 8. Buchneria rhomboidalis comb. n., scanning electron micrographs. A Part of the lectotype, NSMT Te-737 (original MZS 37-2) B Specimen NSMT-Bry R256, showing rhomboidal autozooids with few frontal pores C Orifice with a round suboral avicularium, NSMT-Bry R267 D Suboral avicu- laria, each with a small, conical distal tooth, NSMT-Bry R267 E Autozooids, showing the slightly project- ing rostrum of the suboral avicularia, NSMT-Bry R267 F Kenozooids interspersed with autozooids at the base of the colony, NSMT TeS-1. Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 13 Orifice deeply immersed; aperture at colony surface roughly semicircular in outline, without sinus proximally; cormidial, bounded by contributions of frontal calcification from distal and one or two lateral zooids, with suture lines sometimes evident between the sectors (Fig. 8C, D). Suboral avicularium small, proximal to orifice on the peristome periphery; circular, with complete pivot, rostrum slightly elevated, slightly denticulate, semicircular mandible directed proximolaterally (Fig. 8C, D, E); distal tooth of suboral avicularium small, rounded-conical (Fig. 8D). No other avicularia were observed. On both the edges of branches and in older part of colony, interzooidal kenozooids lack- ing orifice (Fig. 8F) are interspersed with autozooids; kenozooids especially numerous in the basal part of colony. Ooecium imperforate, smooth, completely immersed, not evident from colony surface; proximal margin almost straight or slightly curved, rarely obscuring the distal edge of primary orifice in oviccelate zooids (Fig. 7C). Orifice deeply immersed; aperture at colony surface roughly semicircular in outline, without sinus proximally; cormidial, bounded by contributions of frontal calcification from distal and one or two lateral zooids, with suture lines sometimes evident between the sectors (Fig. 8C, D). Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). Suboral avicularium small, proximal to orifice on the peristome periphery; circular, with complete pivot, rostrum slightly elevated, slightly denticulate, semicircular mandible directed proximolaterally (Fig. 8C, D, E); distal tooth of suboral avicularium small, rounded-conical (Fig. 8D). No other avicularia were observed. On both the edges of branches and in older part of colony, interzooidal kenozooids lack- ing orifice (Fig. 8F) are interspersed with autozooids; kenozooids especially numerous in the basal part of colony. Ooecium imperforate, smooth, completely immersed, not evident from colony surface; proximal margin almost straight or slightly curved, rarely obscuring the distal edge of primary orifice in oviccelate zooids (Fig. 7C). i Distribution. Eastern part of Sagami Bay, and the Sagami Sea southwest of Jogashima and west of Ōshima, at depths of 200–493 m. Remarks. Examination of Ortmann’s (1890) type specimens revealed this species belongs not in Escharoides but in Buchneria, on the basis of the frontal shield with few pores, absence of oral spines, orifice without lyrula, immersed imperforate ooecium, and the suboral avicularia. Buchneria rhomboidalis is characterized by having rhom- boidal zooids and flat branches. This species resembles B. teres, but differs in having flat rather than cylindrical branches, in lacking a peristomial labium and sinus, and in lacking a large avicularium at branch bifurcations. The depth distribution of Buchneria rhomboidalis (200–493 m) is shallower than that of B. teres (432–3660 m). Buchneria variabilis (Androsova, 1958), comb. n. http://species-id.net/wiki/Buchneria_variabilis Figures 9, 10 Figures 9, 10 Porella variabilis Androsova, 1958, 165, fig. 96; type locality, Moneron Island, northern Sea of Japan. Porella variabilis Androsova, 1958, 165, fig. 96; type locality, Moneron Island, northern Sea of Japan. Material examined. Androsova’s type specimen (ZIN-1/3670) in Zoological Institute of the Russian Academy of Sciences (ZIN RAS), colony collected southwestern re- gion of Sakhalin, Moneron Island (Kaibato), Sea of Japan, 36 m depth, (examined by micrographs); large erect colonies and fragments (NSMT Te-724 to Te-734; ZIHU 4130 and 4131), collected SE of Akkeshi Bay (42°48.37'N, 144°56.22'E) by M. Hi- rose from research boat Misago-maru, 6 July 2010, 116 m depth, by dredge; large erect colony and fragments (NSMT Te-790 to Te-794) collected SE of Akkeshi Bay (42°48.20'N, 144°55.43'E to 42°48.26'N, 144°54.91'E) by M. Hirose from research boat Misago-maru, 8 July 2011, 114−116 m depth, by dredge. Measurements. ZL, 0.558−0.921 (0.751±0.101); ZW, 0.408−0.882 (0.611±0.088); n=25. OrL, 0.135−0.223 (0.189±0.019); OrW, 0.130−0.226 (0.192±0.023); n=27. OvL, 0.124−0.444 (0.247±0.072); OvW, 0.104−0.395 (0.214±0.056); n=44. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). 14 Masato Hirose / ZooKeys 241: 1–19 (2012) Figure 9. Buchneria variabilis comb. n. A Large, bushy dead colony with various encrusting epibionts, NSMT Te-726 B Large, fan-shaped living colony, NSMT Te-724; note the broad circular monticules at centre right. Figure 9. Buchneria variabilis comb. n. A Large, bushy dead colony with various encrusting epibionts, NSMT Te-726 B Large, fan-shaped living colony, NSMT Te-724; note the broad circular monticules at centre right. Description. Colony erect, rigid, robust, with thick, broad, strap-like branches at least 10 zooid widths across, or foliaceous, fan-shaped lobes; lobes or branches 0.86 to 8.04 cm wide (2.15±1.38 cm, n=25), multifurcate or irregularly lobed on distal margin; zooids open on both sides (Fig. 9). Broad lobes of some colonies are covered with conspicuous, closely spaced circular monticules (Fig. 9B). Autozooids oval, rounded hexagonal, or subrectangular in outline; strongly convex frontally, ar- ranged in quincunx, zooecial borders indistinct; frontal shield tessellated, with four to eight areolar pores of irregular size along margin or offset more centrally (Fig. 10A, B). Orifice (Fig. 10C, D) semicircular, broader than long, slightly concave proximally, lyrula and condyles absent (Fig. 10D); deeply immersed with age. Oral spines lacking. Peristome deep, cormidial, formed by contributions of secondary calcification from distal and lateral zooids, with suture lines often evident between the sectors (Fig. 10E). Suboral avicularia approximately same size as orifice, located at margin of peristome; oval, with complete or incomplete pivot, rostrum slightly elevated distally, with a median tooth; mandible semicircular, directed proximally or proximolaterally (Fig. 10B, C). Rounded conical tooth on oral edge of avicularian rostrum conspicuous, projecting into secondary orifice (Fig. 10E). Hypertrophied suboral avicularia are frequent; often larger in area than orifice; distal end of rostrum elevated, pointed; rounded-triangular mandible directed proximally (Fig. 10B, C). I observed no other types of avicularia. Basal part of colony robust, composed of both interzooidal kenozooids and autozooids, borders indistinct. Ooecium imperforate, smooth, completely immersed by secondary calcification from the neighboring zoo- ids, the proximal margin of the ooecium distinctly indented laterally and centrally, obscuring the distal edge of primary orifice in ovicellate zooids (Fig. 10E). Frontal budding frequent (Fig. 10F). Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 15 Figure 10. Buchneria variabilis comb. n., NSMT Te-729, scanning electron micrographs. Type species. Palmicellaria dofleini Buchner, 1924 by original designation by Harmer (1957: 876) (= Escharoides teres Ortmann, 1890). A Autozoo- ids showing the strongly convex frontal wall with few pores B Autozooids with various sizes of suboral avicularia C Adjacent autozooids showing different sizes of suboral avicularia D Orifice without lyrula or condyles E Enlargement showing immersed orifices and the narrow, conical tooth distal to suboral avicularia F Overgrowth by frontal budding in the central part of the colony. Figure 10. Buchneria variabilis comb. n., NSMT Te-729, scanning electron micrographs. A Autozoo- ids showing the strongly convex frontal wall with few pores B Autozooids with various sizes of suboral avicularia C Adjacent autozooids showing different sizes of suboral avicularia D Orifice without lyrula or condyles E Enlargement showing immersed orifices and the narrow, conical tooth distal to suboral avicularia F Overgrowth by frontal budding in the central part of the colony. Distribution. Moneron Island, SW Sakhalin, 36 m depth (Androsova 1958); off Akkeshi Bay, Hokkaido, 114–116 m depth (this study). Distribution. Moneron Island, SW Sakhalin, 36 m depth (Androsova 1958); off Akkeshi Bay, Hokkaido, 114–116 m depth (this study). Remarks. My material matches Androsova’s (1958) description of Porella vari- abilis. She mentioned that the tooth on the proximal margin of the peristome is associ- ated with the suboral avicularium, and that the tooth is present when the avicularium abuts the proximal margin of the peristome, but absent when the avicularium is offset proximally from the peristome. This is the case in all known species of Buchneria. An- Masato Hirose / ZooKeys 241: 1–19 (2012) 16 drosova (1958) reported B. variabilis from 36 m depth, shallower than my specimen from 114–116 m near Akkeshi. This apparent difference in the bathymetric distribu- tion between Sakhalin and Akkeshi may be related to water temperature, as Sakhalin is more northern and colder than Akkeshi. Buchneria variabilis differs from B. teres and B. rhomboidalis in colony form and in having larger suboral avicularia. Taxonomic key to Japanese Buchneria species 1a Colony robust; branches thick and broad, fan-shaped distally; hypertrophied suboral avicularia often occur on the frontal shield........................................ ..................................................................... Buchneria variabilis comb. n. 1b Colony more delicate, branches cylindrical or flattened, slender distally; hy- pertrophied suboral avicularia rare or absent ...............................................2 2a Branches flattened; zooids rhomboidal; hypertrophied suboral avicularia ab- sent ........................................................ Buchneria rhomboidalis comb. n. 2b Branches cylindrical; zooids rectangular, hypertrophied suboral avicularia present.................................................................. Buchneria teres comb. n. Discussion To date, species of Buchneria have been only reported from the northwestern Pacific, where they appear to have a cold-temperate distribution (Fig. 11). Most records are from northern Japanese waters; I have not detected Buchneria species in field surveys in southern Japan (e.g., near Okinawa). The southernmost record of living Buchneria in Japan is B. rhomboidalis and B. teres from Sagami Bay, of which B. teres has been con- sidered as abyssal species (Buchner, 1924; Harmer, 1957) and was collected at depths of more than 400 m in Sagami Bay. Another, more northern Buchneria species in Japan showed shallower distribution; Buchneria variabilis occurred at 114–116 m depth near Akkeshi and at 36 m depth near Sakhalin (Androsova, 1958). Figure 11. Map showing the known distribution of the three Buchneria species in the western Pacific. Figure 11. Map showing the known distribution of the three Buchneria species in the western Pacific. Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 17 While Buchneria might be endemic to this region, further sampling around the North Pacific rim, including deep-water sites, may expand the distributions of known species or detect additional species. Furthermore, as Buchneria resembles some other North Atlantic genera such as Porella, Palmiskenea, Marguetta and Porelloides, taxo- nomic studies of these other genera may also detect additional Buchneria species, and the close relationship may indicate a common history at times when there was a con- nection between the Pacific and Atlantic. Acknowledgments I thank Dr. Shunsuke F. Mawatari (Hokkaido University Museum) for valuable assis- tance in the study of the historical collections. I thank Dr. Bernhard Ruthensteiner and Mrs. Eva Lodde (Zoologische Staatssammlung München) for valuable advice and assis- tance in the study of the Doflein and Haberer Collections; Madame Marie-Dominique Wandhammer and Madame Marie Meister (Musée Zoologique Strasbourg) for kind help, assistance in observations, and the loan of the Döderlein Collection; Dr. Hiroshi Namikawa (Showa Memorial Institute of the National Museum of Nature and Sci- ence) for advice and assistance, and the loan of the bryozoan collection of Emperor Showa; and Mr. Hisanori Kohtsuka (Misaki Marine Biological Station, The University of Tokyo) for crucial support with collecting in Sagami Bay. Special thanks are due to Dr. Joachim Scholz and Mrs. Brigitte Lotz (Senckenberg Forschungsinstitut) for assis- tance during my stay in Germany. I thank Miss Mary Spencer Jones (Natural History Museum London) for valuable advice and assistance in the survey of the Harmer’s and Androsova’s material. I thank Mrs. Elly Beglinger (Naturalis, Leiden) for assistance in the survey of Harmer’s material. I thank Dr. Nina Denisenko (Zoological Institute of the Russian Academy of Sciences) for sending the photographs of Androsova’s type specimen. I thank Dr. Dennis Gordon (National Institute of Water & Atmospheric Research), Dr. Andrew Ostrovsky (University of Vienna), and two reviewers Dr. Björn Berning (Oberösterreichische Landesmuseen) and Dr. Kevin Tilbrook (Queensland Masato Hirose / ZooKeys 241: 1–19 (2012) 18 Museum) for valuable advice and suggestions on the manuscript. I thank Professor Matthew Dick (Hokkaido University) for checking my English and providing crucial suggestions. This study was supported in part by the 21st Century COE Program “Neo-Science of Natural History” at Hokkaido University, funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan, and a Fellowship from the Japan Society for the Promotion of Science (No. 20-3856). References Androsova EI (1958) Bryozoa of the Order Cheilostomata from the northern part of the Sea of Japan. Issledovaniya Dal'Nevostochnykh morei SSSR 5: 90–204. Buchner P (1924) Studien über den Polymorphismus der Bryozoen. 1. Anatomisch und syste- matische Untersuchungen an japanischen Reteporiden. Zoologisch Jahrbücher. Abteilung für Systematik, Geographie und Biologie der Tiere 48: 155–216. Jullien J, Calvet L (1903) Bryozoaires provenant des Campagnes de l’Hirondelle (1886–1888), Résultats des Campagnes Scientifiques accomplies sur son yacht par Albert Ier, prince sou- verain de Monaco XXIII. Imprimerie de Monaco, Monaco, 1–188. Gordon DP (1984) The marine fauna of New Zealand: Bryozoa: Gymnolaemata from the Ker- madec Ridge. New Zealand Oceanographic Institute Memoir 91: 1–198. Gordon DP (1989) New and little-known deep-sea taxa of umbonulomorph Bryo- zoa and their classification. New Zealand Journal of Zoology 16: 251–267. doi: 10.1080/03014223.1989.10422575 Harmer SF (1957) The Polyzoa of the Siboga Expedition, Part 4. Cheilostomata Ascophora II. Siboga Expedition Reports 28d: 641–1147. Hirose M (2010) Cheilostomatous Bryozoa (Gymnolamata) from Sagami Bay, with Notes on Bryozoan Diversity and Faunal Changes over the past 130 Years. PhD Dissertation, De- partment of Natural History Science, Hokkaido University, Sapporo, Japan. National Museum of Nature and Science (2007) Fauna Sagamiana. Tokai University Press, Hatano, 212 pp. Ortmann A (1890) Die Japanische Bryozoenfauna. Bericht über die von Herrn Dr. L. Döder- lein in Jahre 1880–1881 gemachten Sammlungen. Archiv für Naturgeschafte 54(1): 1–74. Spencer Jones ME, Scholz J, Grischenko AV, Fujita T (2011) Japanese bryozoans from the Meiji Era at the Natural History Museum, London, part 1: the Mitsukuri and Owston Collections. In: Wyse Jackson PN, Spencer Jones ME (Eds.) Annals of Bryozoology 3. International Bryozoology Association, Dublin, 143–157. Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan 19 Citation: Hirose M (2012) Revision of the genus Buchneria (Bryozoa, Cheilostomata) from Japan. ZooKeys 241: 1–19. doi: 10.3897/zookeys.241.3175.app Appendix Specimens examined in this study. (doi: 10.3897/zookeys.241.3175.app) File format: Microsoft Office Excel file (xls). Explanation note: The deposit column indicates the museum where specimens reside: MZS, Musée Zoologique Strasbourg, ZSM, Zoologische Staatssammlung München, NSMT, National Museum of Nature and Science Tokyo (now located in Tsukuba). Copyright notice: This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
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Evolution of a predator-induced, nonlinear reaction norm
Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences
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MJC, 0000-0002-5351-8108; WH, 0000-0002-9132-6510 Inducible, anti-predator traits are a classic example of phenotypic plasticity. Their evolutionary dynamics depend on their genetic basis, the historical pat- tern of predation risk that populations have experienced and current selection gradients. When populations experience predators with contrasting hunting strategies and size preferences, theory suggests contrasting micro-evolutionary responses to selection. Daphnia pulex is an ideal species to explore the micro- evolutionary response of anti-predator traits because they face heterogeneous predation regimes, sometimes experiencing only invertebrate midge predators and other times experiencing vertebrate fish and invertebrate midge predators. We explored plausible patterns of adaptive evolution of a predator-induced morphological reaction norm. We combined estimates of selection gradients that characterize the various habitats that D. pulex experiences with detail on the quantitative genetic architecture of inducible morphological defences. Our data reveal a fine scale description of daphnid defensive reaction norms, and a strong covariance between the sensitivity to cues and the maximum response to cues. By analysing the response of the reaction norm to plausible, predator-specific selection gradients, we show how in the context of this covari- ance, micro-evolution may be more uniform than predicted from size-selective predation theory. Our results show how covariance between the sensitivity to cues and the maximum response to cues for morphological defence can shape the evolutionary trajectory of predator-induced defences in D. pulex. Received: 21 April 2017 Accepted: 19 July 2017 Subject Category: Evolution Subject Areas: ecology, evolution, genetics Keywords: reaction norm, evolution, predator-induced plasticity, morphological defence, Daphnia pulex Author for correspondence: Andrew P. Beckerman e-mail: a.beckerman@sheffield.ac.uk Electronic supplementary material is available online at https://dx.doi.org/10.6084/m9. figshare.c.3843646. Subject Category: Evolution Subject Areas: ecology, evolution, genetics Keywords: reaction norm, evolution, predator-induced plasticity, morphological defence, Daphnia pulex Keywords: reaction norm, evolution, predator-induced plasticity, morphological defence, Daphnia pulex Mauricio J. Carter1,2, Martin I. Lind3, Stuart R. Dennis4, William Hentley5 and Andrew P. Beckerman5 Mauricio J. Carter1,2, Martin I. Lind3, Stuart R. Dennis4, William Hentley5 and Andrew P. Beckerman5 Research Cite this article: Carter MJ, Lind MI, Dennis SR, Hentley W, Beckerman AP. 2017 Evolution of a predator-induced, nonlinear reaction norm. Proc. R. Soc. B 284: 20170859. http://dx.doi.org/10.1098/rspb.2017.0859 Research Cite this article: Carter MJ, Lind MI, Dennis SR, Hentley W, Beckerman AP. 2017 Evolution of a predator-induced, nonlinear reaction norm. Proc. R. Soc. B 284: 20170859. http://dx.doi.org/10.1098/rspb.2017.0859 Research Cite this article: Carter MJ, Lind MI, Dennis SR, Hentley W, Beckerman AP. 2017 Evolution of a predator-induced, nonlinear reaction norm. Proc. R. Soc. B 284: 20170859. http://dx.doi.org/10.1098/rspb.2017.0859 rspb.royalsocietypublishing.org rspb.royalsocietypublishing.org Mauricio J. Carter1,2, Martin I. Lind3, Stuart R. Dennis4, William Hentley5 and Andrew P. Beckerman5 Research 1Centro Nacional del Medio Ambiente, Universidad de Chile, Avenida Larrain 9975, La Reina, Santiago, Chile 2Departamento de Ecologı´a, Facultad de Ecologı´a y Recursos Naturales, Universidad Andres Bello, Santiago, Chile 3Animal Ecology, Department of Ecology and Genetics, Uppsala University, Uppsala 75236, Sweden 4Department of Aquatic Ecology, Eawag, U¨berlandstrasse 133, 8600 Du¨bendorf, Switzerland 5Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK MJC, 0000-0002-5351-8108; WH, 0000-0002-9132-6510 1. Introduction Author for correspondence: Andrew P. Beckerman e-mail: a.beckerman@sheffield.ac.uk Predator-induced defences remain one of the core examples of phenotypic plas- ticity in the wild. Examples include dramatic changes in morphology, large- and small-scale shifts in habitat use and foraging, and change to the magnitude and direction of several life-history traits [1–8]. Several decades of research in aquatic communities show that plasticity in all these types of traits can be mobilized by exposure to predation risk cues—typically chemicals released by predators [8–17]. One of the most studied examples of adaptive phenotypic plasticity isthe pred- ator-induced morphological defence in waterfleas facing predation risk by fish or midge larvae [2,18,19]. Daphnia pulex is a species that faces predation risk from at least two size-selective predators: midge larvae and fish. Midge predation is typically small size-selective and results in morphological defences—called neckteeth—at the 2nd/3rd juvenile instar, the size at which they are most at risk. This is accompanied by delayed maturation at a larger size representing investment into growth over reproduction. By contrast, fish predation is typically large size-selective and results in no morphological defence in D. pulex, but accel- erated maturation at a smaller size, indicative of investment into reproduction over growth [20]. The induced morphological defence in D. pulex is considered adaptive, conferring a 30–50% increase in survival [9,21]. Electronic supplementary material is available online at https://dx.doi.org/10.6084/m9. figshare.c.3843646. & 2017 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. (b) Reaction norms ll d We experimentally determined the predator-induced morphologi- cal reaction norm in controlled temperature rooms at 218C on a 16 L : 8 D cycle. We estimated the reaction norms of the neckteeth by exposing replicate daphnids of each genotype to a gradient of chemical kairomone cues from Chaoborus flavicans [8,25]. We extracted kairomone from frozen C. flavicans, (Honka, Germany) [8,9,25]. Third-generation mothers of each genotype, at their second brood, were exposed to each concentration of chemical cue (to avoid maternal and grand-maternal effects). Five neonates (third brood, third generation) from each of three mothers, for a total of 15 neonates per genotype, were distributed individually into glass jars containing 50 ml of hard artificial pond water [32], food (Chlorella vulgaris; 2  105 cells ml21) and the appropriate volume of purified cue. Such a characterization allows for a unique game, where we can ask how inducible defences, and the reaction norm that describes them, might evolve. Theory and data suggest that the evolution of a defence characterized by, for example, three traits,will bedrivenbyacombinationofhow selection pressures target the traits, the heritability of the traits (genetic variation) and correlations among traits (trade-offs and constraints) [6–8]. Here we predict plausible patterns of micro-evolution ofthe D. pulex predator-induced morphological defence, specifi- cally revealing how genetic (co)variation among the amount of defence, the sensitivity to the cue and the reactivity to the cue might constrain such a response. We do this by integrating field-based estimates of genetic variation in the three traits (asymptote, threshold, reactivity) with various, plausible selec- tion regimes via the multivariate breeder’s equation. Via these data and the breeders equation, we evaluate the potential micro-evolution of morphological defence reaction norms. We defined the reaction norm along a gradient of seven con- centrations of extracted predator cue (0, 0.1, 0.25, 0.5, 0.75, 1, 2 ml ml21), with the exception of clone ‘carlos’ that was evaluated at four more concentrations (0.15, 0.4, 0.6, 0.8 ml ml21). Media were replaced daily and induction of neckteeth was scored following established methods. Each individual was examined under the microscope daily for evidence of induction, from birth to maturation. Points were assigned to the presence of a pedestal and/or the presence of spikes. Pedestals were classified as absent (score ¼ 0), small (score ¼ 30) and large (score ¼ 50). Spikes were assigned 10 points each. rspb.royalsocietypublishing.org Proc. R. Soc. B 284: 20 2 primarily Chaoborus sp. (onwards: midge pond). Crabtree pond (five genotypes; 53824017.4600 N, 1827026.8100 W) contains both fish and midge predators (onwards: fish–midge pond). Genetic differ- ences between iso-female lines were confirmed by microsatellite analysis [31]. Historically, this predator-induced morphological defence has been classified as a threshold or binary trait [22,23]. How- ever, recent theory [24] and empirical data [8,15,19,25,26] suggest that the morphological defence can be effectively characterized by a continuous, nonlinear function, typically sig- moid, of predation risk [8,25]. In fact, given this functional form, it is possible to characterize population patterns of, and genetic variation in, the induced defence in terms of the parameters of a three-parameter sigmoid model [8,25,27]: the asymptote rep- resents the maximum amount of defence, the inflection point the ‘threshold’ or sensitivity to predation cues, and the slope or scale parameter the ‘reactivity’, or how binary the response is. The reaction norm—how the defence varies with increasing predation risk—can be captured by three variables. rspb.royalsocietypublishing.org P 2 2 (b) Reaction norms ll d For individuals exhibiting neckteeth in multiple instars, we used the maximal amount of induction in ana- lyses, regardless of the instar in which it was observed. Typically, this was either 2nd or 3rd instar. Our maximum level of induction among all replicates was 130 points (large pedestal, eight spikes). All individual scores were normalized to this maximum defining induction levels between 0 and 100 [8,19,25]. Our approach to make quantitative predictions about the magnitude and direction of the possible responses to selection involves four steps. First, we characterize the reaction norms for morphological predator defence as a sigmoid, three- parameter (trait) reaction norm. Second, we estimate the G-matrix that defines a plausible empirical sample of the variance and covariance among the three traits in nature. Third, we derive a set of five plausible selection gradients that combine selection gradient analysis of reproduction via traditional multiple regression tools [28,29] with additional information on survival drawn from size-selective predation theory. Together these data form a data platform on which we can explore potential micro-evolutionary change in reac- tion norms. To this end, we then combine the G-matrix and selection gradients via the multivariate breeder’s equation to make predictions about, and visualize, plausible responses to selection by the nonlinear reaction norm of inducible morphological defence. We characterized the reaction norms of neckteeth induction for each maternal replicate of each genotype by a sigmoid curve where the asymptote corresponds to maximum induction (maximum), the inflection to the concentration of cue where 50% induction occurs (threshold or sensitivity) and the slope (reactivity), corre- sponding to the rate of induction or how binary the reaction norm looks [8,25]. These data were estimated for each maternal replicate (i.e. three mothers; n ¼ 5 reps/mother  7 treatments) via nonlinear least-squares with a three-parameter logistic model. Parameters were estimated using the nls function and the associated three-parameter logistic model in R [33]. This analysis provided discrete and replicated trait data for each genotype (3 maternal lines  12 clones ¼ 36 estimates of maximum, sensitivity and reactivity), along the experimental gradient. (d) G-matrix of neckteeth phenotypic plasticity (d) G matrix of neckteeth phenotypic plasticity We used the 36 estimates of each of the three traits among the genotypes, structured by maternal identity, to characterize a G-matrix. We fit a trivariate model with mother (n ¼ 12) as the random effect, using Bayesian Monte Carlo Markov chain (MCMC) generalized linear mixed models (MCMCglmm package in R v. 3.3.1 [35]) to obtain the (broad-sense) genetic covariance matrix. We used informative, parameter expan- ded priors, 180 000 iterations, a burn-in period 45 000 and thinning interval 200 to estimate a joint posterior distribution of n ¼ 1000. The chains were well mixed; time-series plots showed no sign of autocorrelation. This produced a modal estimate of variance and covariance among traits and allows direct estimates of broad-sense heritability and genetic corre- lations. Significance of genetic parameters was assessed using 95% credible intervals calculated from the joint posterior distri- bution [35]. We estimated the G-matrix as the posterior mode of the joint posterior of the variance covariance matrix. We doubled the nonlinear coefficient of multiple regression (following Stinchcombe et al. [41]) to standardize their magnitude with the linear and correlational gradients estimated above, which helps to avoid underestimation of disruptive or stabilizing selec- tion. We then explored the extent of nonlinear selection by performing a canonical correspondence analysis. This method helps to identify the major axes of the overall response surface [42]. We used randomization to test the significance of all par- ameters of bR, taking the potential non-independence of residual into account [38]. The selection gradients on survival, bS were defined from the empirical and theoretical literature of size-selective predation on Daphnia. This literature (see [20] for theory) is strongly focused around assumptions that gape-limited predators, such as Chaoborous larvae, which are able to attack small prey [43,44], lead- ing to conspicuous defences in D. pulex [14,26], whereas visually hunting predators such as fish target large prey [44,45] and do not favour induced morphological defences in D. pulex. To reflect this, we define the bS by how each reaction norm parameter would respond in each predation context. For example, we assume that survival is increased under small size-selective midge predation by increasing the asymptote. Table 1 provides an overview of how we characterized adaptive strategies associated with each predation regime, defined by the three variables. We fit two additional models. First, we removed the random effect. (e) Defining selection gradients Our approach for estimating selection gradients follows [27]. Selection under predation risk in nature depends upon both repro- duction and survival. Their relative importance may depend upon the predation regime and how predation risk varies over a season [35]. We, therefore, defined five plausible composite selection gra- dients, each representing a different weighting of reproduction (bR) and survival (bS): bR, bR þ 0.5bS, bR þ bS, 0.5bR þ bS and bS (also see Lind et al. [27]). (d) G-matrix of neckteeth phenotypic plasticity The deviance information criteria (DIC) confirmed that fitting the random component estimated a substantial amount of variation. Second, we tested the significance of covariance structure by com- paring a model setting the off diagonal elements of the G-matrix to zero using the ‘idh()’ function instead of ‘us()’ function for the random effect (see MCMCglmm package in R v. 3.3.1 [35]). Again, a DIC comparison indicated significant covariance. Finally, we created the composite selection gradients by stan- dardizing bR and bS to a total length (strength of selection) of 1 and producing the several combinations of reproduction (bR) and survival (bS) defined above. Each composite b was standardized to a length of 1 to enable meaningful comparison of the response to selection in the following step (electronic supplementary material, table S1). 2. Material and methods Soc. B 284: 20170859 that first clutch reproduction is highly correlated with reproduc- tion after three clutches (r ¼ 0.77, p , 0.001; MI Lind, K Yarlett, AP Beckerman 2014, unpublished data). that first clutch reproduction is highly correlated with reproduc- tion after three clutches (r ¼ 0.77, p , 0.001; MI Lind, K Yarlett, AP Beckerman 2014, unpublished data). used a randomization test of significance for all parameters of the selection gradients. We re-estimated selection gradients from new regressions based on random allocations of fitnessto predictor variables [40]. From this, we derived two-tailed probabilities of estimating selection gradients of the observed magnitudes by chance. We performed separate randomization tests of linear and nonlinear gradients in each environment 2. Material and methods The experimental exposure of all replicates to predation cues continued until all animals had reached maturity. Maturation was classified as the appearance of eggs in the brood pouch. We defined a proxy of fitness here as a function of age at first reproduction and clutch size and used this in the selection gradient analysis below: (a) Study system We characterized the neckteeth reaction norms of and genetic covariance matrix formed by 12 iso-female lineages of D. pulex [25], a keystone herbivore of algae in ponds and lakes [30]. In the UK, D. pulex can be subject to contrasting and seasonal predation pressure by fish in spring, and midge larvae during summer and autumn [8]. The iso-female clones were originally collected from two very different shallow source ponds in Sheffield, UK, separated by approximately 8 km [25]. Bagshaw pond (seven genotypes; 5382005.3700 N, 182708.1200 W) contains only invertebrate predators, R0 ¼ lnðfirst clutch sizeÞ age at first reprodcution : ð2:1Þ ð2:1Þ This measure of fitness is focused on reproduction and is highly correlated with population growth rate in exponentially growing populations [34]. Furthermore, our own data confirm Table 1. Hypothetical output of response of selection in D. pulex two predator environments with different scenarios of survival selection gradients on neckteeth reaction norm parameters 3 Table 1. Hypothetical output of response of selection in D. pulex two predator environments with different scenarios of survival selection gradients on neckteeth reaction norm parameters. r 3 Table 1. Hypothetical output of response of selection in D. pulex two predator environments with different scenarios of survival selection gradients on neckteeth 3 3 parameters of neckteeth induction maximum threshold steepness adaptive strategies high b: 1 low b: 21 high b: 1 midge pond higher expression of morphological response, survival benefit lower sensitivity morphological response, less response costs faster change adaptive strategies low b: 21 high b: 1 low b: 0 fish–midge pond lower expression of morphological response, less energetic cost higher sensitivity morphological response, higher response cost slower change parameters of neckteeth induction maximum threshold steepness adaptive strategies high b: 1 low b: 21 high b: 1 midge pond higher expression of morphological response, survival benefit lower sensitivity morphological response, less response costs faster change adaptive strategies low b: 21 high b: 1 low b: 0 fish–midge pond lower expression of morphological response, less energetic cost higher sensitivity morphological response, higher response cost slower change Proc. R. (f) The evolution of a reaction norm of inducible defence We defined the selection gradient on reproduction (bR) by regressing our fitness proxy (equation (2.1)) against the three traits defining the reaction norm [28,36]. We fit the selection gradi- ent (fitness proxy as a function of the maximum (asymptote), sensitivity (inflection) and reactivity (scale)) as a response surface using the rsm package in R [37], which provided estimates of the linear (b; directional selection) and quadratic (g; indirect selection) components. As has been suggested in the literature [38,39], we We applied the multivariate breeders equation to the phenotypic reaction norm for each of midge and fish–midge population, demonstrating how the G-matrix we estimated, along with five different weightings of selection on reproduction and survival, might drive evolution of each reaction norm. The total response to selection for each component of the reaction norm can be decomposed into direct and correlated 0 0.5 1.0 1.5 2.0 0 0 0 0 0 0 bernardo predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 boris 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 bubba 0.5 1.0 1.5 2.0 0 20 40 60 80 100 carlos neckteeth induction (%) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 cecil 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 cletus reaction norms of 12 Daphnia pulex clones facing a gradient of Chaoborus predation risk. Each line corresponds to a clone-specific sigmoid fit that clone’s data. The data points correspond to individual replicates of each mental condition. We fit a three-parameter sigmoid model where the asymptote is the maximum induction, the inflection is the cue concentration at which 50% induction is reached and the slope or scale is the reactivity or e response. 3. Results We found significant genetic variation in the maximum amount of induction (asymptote) and the sensitivity (threshold/inflection) to cues (table 2), with genetic variation in the sensitivity being lower than in the maximum. We also found a negative and significant genetic covariance between the maximum and sensitivity of induction (table 2). This rep- resents a positive covariance in ‘biological’ terms as reducing the sensitivity (more sensitive to kairomones) and increasing the maximum response are both deemed ‘beneficial’ in the face of midge predation. Thus, this G-matrix, comprised of individuals from two populations, reflects a potentially (b) G-matrix (b) G-matrix (f) The evolution of a reaction norm of inducible defence midge midge–fish predation regime sensitivity of induction 0 0.2 0.4 0.6 0.8 c2= 5.71, p < 0.05 midge midge–fish reactivity of induction 0 0.05 0.10 0.15 0.20 c2= 3.44, p = 0.06 maximum of induction reactivity of induction Figure 2. Parameter mean + s.e. values that describe the neckteeth reaction norms to Bagshaw (midge) and Crabtree (fish–midge) populations of Daphnia pulex. Statistical comparison was performed with maximum likelihood analysis treating predation regime as fixed effect. Table 2. G and P (co)variance matrices estimates from the pooled population (midge/fish–midge as fixed effect). The parameters correspond to mode of posterior distribution from data that were standardized to mean ¼ 0 and s.d. ¼ 1 prior to estimating variance components. The significant genetic parameters are indicated by (*), after comparing DIC (electronic supplementary material, table S2) between models. maximum (IC) sensitivity (IC) reactivity (IC) G-matrix maximum 0.18 (0.03; 0.53)* 20.12 (21.54; 20.18)* 20.001 (20.72; 0.09) sensitivity 0.35 (0.12; 0.95)* 0.03 (20.09; 0.79) reactivity 0.02 (0.005; 0.43) P-matrix maximum 0.36 (0.23; 0.61) 20.13 (20.28; 0.45) 20.07 (20.30; 0.12) sensitivity 0.53 (0.32; 0.85) 0.20 (0.03; 0.53) reactivity 0.79(0.53; 1.36) (indirect) selection responses [46]: less sensitive threshold (0.42+0.25 ml ml21). A small-scale parameter (reactivity) in both ponds suggests a steep, threshold-like response (midge: 0.05+0.02; fish: 0.08+0.05). Our fitness proxy, defined as the log quotient of age at matu- rity and first clutch size, did not differ between ponds (x2 ¼ 1:48, p ¼ 0.22). (indirect) selection responses [46]: DZi ðdirectÞ ¼ Gibi and DZi,j ðindirectÞ ¼ X i=j Gibi: ð2:2a,bÞ We examined whether any changes in genetic (co)variation can be ascribed to nonlinear and correlated selection (g—the matrix of nonlinear selection gradient) [36]. (f) The evolution of a reaction norm of inducible defence midge 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 benja neckteeth induction (%) midge – fish 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 barney neckteeth induction (%) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 bummerboy 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 billy 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 chardonnay neckteeth induction (%) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 cyril 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 bernardo predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 predator cue concentration ml ml–1 neckteeth induction (%) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 boris 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 bubba 0.5 1.0 1.5 2.0 0 20 40 60 80 100 carlos neckteeth induction (%) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 cecil 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 cletus 1. Neckteeth reaction norms of 12 Daphnia pulex clones facing a gradient of Chaoborus predation risk. Each line corresponds to a clone-specific sigmoid fit that clone’s data. The data points correspond to individual replicat each experimental condition. We fit a three-parameter sigmoid model where the asymptote is the maximum induction, the inflection is the cue concentration at which 50% induction is reached and the slope or scale is the re cletus midge – fish chardonnay cecil 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 billy bubba billy 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 bummerboy bummerboy midge boris 0 0.5 1.0 1.5 2.0 0 20 40 60 80 100 barney neckteeth induction (%) bernardo barney midge midge–fish maximum of induction 0 20 40 60 80 100 c2= 6.80, p < 0.01 midge midge–fish predation regime sensitivity of induction 0 0.2 0.4 0.6 0.8 c2= 5.71, p < 0.05 midge midge–fish reactivity of induction 0 0.05 0.10 0.15 0.20 c2= 3.44, p = 0.06 Figure 2. Parameter mean + s.e. values that describe the neckteeth reaction norms to Bagshaw (midge) and Crabtree (fish–midge) populations of Daphnia pulex. Statistical comparison was performed with maximum likelihood analysis treating predation regime as fixed effect. (c) Selection gradients The selection gradient estimates for our fitness proxy in each predation regime were distinct. Midge pond data revealed directional (linear) and nonlinear (disruptive) selection on maximum induction (table 3). Fish–midge pond data revealed nonlinear (disruptive) selection on the sensitivity of induction (table 3). The canonical analysis revealed a significant and positive eigenvalue among traits for the midge pond. The eigenvector associated with the dominant eigenvalue was characterized by opposite loadings for the maximum and the sensitivity of induction, paralleling the patterns of selection indicated on the original axis (table 3). The canonical analysis for data from fish–midge pond revealed no significant eigen- values. The first eigenvalue was linked to an eigenvector dominated by the threshold weighting, again paralleling the patterns on the original scale (table 3). The canonical ana- lyses for each predation scenarios produced a set of three eigenvalues with different sign, suggesting that the overall selection surface is a saddle [42]. We note the absence of selection pressure on the reactivity (slope) of the response, where we also found no significant genetic variation. rspb.royalsocietypublishing.org Proc. R. Soc. B 284: 20170859 6 6 g M matrix traits b maximum sensitivity reactivity li maximum sensitivity reactivity midge (Bagshaw) maximum 0.029 0.189 (0.09)* 0.227 0.581 0.779 0.231 sensitivity 0.016* 20.175 0.095 (0.047) 0.035* 20.616 0.236 0.751 reactivity 0.008 0.087 20.225 0.096 (0.05) 20.072 0.531 20.579 0.618 fish–midge (Crabtree) maximum 0.009 0.051 (0.03) 0.121** 0.259 0.844 0.468 sensitivity 20.018* 0.008 0.202 (0.10)* 0.048** 0.898 20.388 0.204 reactivity 0.008 20.116 20.091 20.073 (20.04) 20.415 20.354 20.367 0.859 *p , 0.05; **p , 0.01. strong constraint where the maximum induction (asymptote) and the sensitivity to predator cues (threshold/inflection) respond together in a biologically meaningful manner. shifts, where the maximum defence is elevated in both environ- ments, but the midge regime sees increased sensitivity to the cue (threshold moves left), while the fish–midge regime sees decreased sensitivity (threshold moves right). Finally, figure 3c shows the effect of equally weighted but combined response to selection on reproduction and survival. Here we see the consequences of combining both selection gradients and the constraint represented by the negative covariation between the maximum and the sensitivity in the G-matrix. The midge regime experiences a small decrease in maximum induction and less sensitivity to the cue, com- pletely at odds with what theory might predict. By contrast, the fish–midge regime sees not only decreased sensitivity (as would be expected), but also increased maximum, which may or may not be expected (see below). (c) Selection gradients (a) Reaction norms We found significant genetic and population specific variation in the maximum (asymptote) and sensitivity (threshold/ inflection) of the reaction norms (figures 1 and 2). Genotypes sourced from the midge pond (Bagshaw) were characterized by high levels of induction (74.0+6.24 induction) and a sensi- tive (closer to 0) threshold (0.13+0.04 ml ml21). Genotypes sourced from the fish–midge pond (Crabtree) show compara- tively lower levels of induction (55.0+10.1 induction) and a Table 3. Summary of linear and quadratic selection analyses and M matrix of eigenvectors from canonical analysis of gmatrix for reaction norms parameters of both populations. The coefficients were obtained from parameters (maximum, sensitivity and reactivity) that describe the reaction norm of sigmoid fit of neckteeth D. pulex. Standardized directional selection coefficient (b), standardized nonlinear and correlated selection coefficients (gmatrix). The nonlinear coefficients reported were doubled from the originals (in parenthesis) following the suggestion of Stinchcombe et al. [42]. Significant coefficients were obtained by randomization (10 000) test. rg Proc. R. Soc. B 284: 20170859 aPosterior mode and the upper and lower bound of the 95% credibility interval are presented, and elements significantly different from zero. the sensitivity of morphology (threshold/inflection) to midge predation cues to shape the micro-evolutionary trajectory of predator-induced defences in D. pulex. This covariance between the two parts of the defence captures patterns of variation seen in figure 1 among the genotypes and is a major influence on our simulation of micro-evolutionary change. norms and show that genetic variation might be predator- regime and population specific. Critically, by analysing the response of the reaction norm to plausible, predator-specific selection gradients, we found that a G-matrix, harbouring a strongcovariancebetweenthesensitivity to cues—thethreshold part of this threshold trait—and the maximum response to cues, predicted a rather more uniform morphological response to predation risk than might be expected under size-selective predation theory about morphological defences [2]. rspb.royalsocietypublishing.org Proc. R. Soc. B 284: 20170859 7 7 trait total response direct selection indirect selection midge pond response DZb(R) maximum 20.089 (20.254; 20.039)a 0 20.089 (20.254; 20.039)a DZb(R)þ0.5b(S) maximum 0.393 (0.168; 1.134)a 0.341 (0.146; 0.884)a 20.119 (20.045; 0.378) DZb(R)þb(S) maximum 0.889 (0.451; 2.292)a 0.680 (0.270; 1.523)a 0.230 (20.039; 0.872) DZ0.5b(R)þb(S) maximum 0.942 (0.478; 2.416)a 0.680 (0.270; 1.523)a 0.280 (0.017; 0.997)a DZb(S) maximum 0.995 (0.500; 2.551)a 0.68 (0.27; 1.523)a 0.344 (0.071; 1.113)a DZb(R) sensitivity 0.121 (0.062; 0.322)a 0.121 (0.062; 0.322)a 0 DZb(R)þ0.5b(S) sensitivity 20.364 (21.099; 21.152)a 20.214 (20.627; 20.092)a 20.165 (20.598; 0.032) DZb(R)þb(S) sensitivity 20.993 (22.405; 20.404)a 20.585 (21.562; 20.301)a 20.271 (21.128; 20.037)a DZ0.5b(R)þb(S) sensitivity 21.222 (22.582; 20.449)a 20.645 (21.723; 20.332)a 20.271 (21.128; 20.037)a DZb(S) sensitivity 21.101 (22.772; 20.503)a 20.706 (21.885; 20.363)a 20.271 (21.128; 20.037)a DZb(R) reactivity 0.039 (20.013; 0.147) 0 0.039 (20.013; 0.147) DZb(R)þ0.5b(S) reactivity 20.125 (20.420; 0.047) 0.014 (0.005; 0.237)a 20.213 (20.628; 0.05) DZb(R)þb(S) reactivity 20.300 (20.934; 0.160) 0.059 (0.006; 0.474)a 20.398 (21.388; 0.088) DZ0.5b(R)þb(S) reactivity 20.315 (21.003; 0.166) 0.059 (0.006; 0.474)a 20.384 (21.490; 0.135) DZb(S) reactivity 20.330 (21.080; 0.153) 0.059 (0.006; 0.474)a 20.400 (21.575; 0.125) fish–midge response DZb(R) maximum 0.009 (0.004; 0.027)a 0 0.009 (0.004; 0.027)a DZb(R)þ0.5b(S) maximum 20.590 (21.587; 20.255)a 20.364 (20.884; 20.146)a 20.221 (20.754; 20.098)a DZb(R)þb(S) maximum 21.274 (22.974; 20.531)a 20.680 (21.523; 20.270)a 20.510 (21.459; 20.226)a DZ0.5b(R)þb(S) maximum 21.280 (22.986; 20.533)a 20.680 (21.523; 20.270)a 20.514 (21.472; 20.228)a DZb(S) maximum 21.286 (22.997; 20.536)a 20.680 (21.523; 20.270)a 20.519 (21.486; 20.230)a DZb(R) sensitivity 20.013 (20.034; 20.007)a 20.013 (20.034; 20.007)a 0 DZb(R)þ0.5b(S) sensitivity 0.646 (0.272; 1.682)a 0.314 (0.135; 0.919)a 0.229 (0.101; 0.783)a DZb(R)þb(S) sensitivity 1.348 (0.668; 3.215)a 0.693 (0.357; 1.850)a 0.519 (0.230; 1.486)a DZ0.5b(R)þb(S) sensitivity 1.354 (0.671; 3.230)a 0.699 (0.360; 1.867)a 0.519 (0.230; 1.486)a DZb(S) sensitivity 1.361 (0.674; 3.246)a 0.706 (0.363; 1.885)a 0.519 (0.230; 1.486)a DZb(R) reactivity 20.004 (20.016; 0.001) 0 20.004 (20.016; 0.001) DZb(R)þ0.5b(S) reactivity 0.115 (20.047; 0.75) 0 20.115 (20.047; 0.751) DZb(R)þb(S) reactivity 0.397 (20.123; 1.561) 0 0.397 (20.123; 1.561) DZ0.5b(R)þb(S) reactivity 0.399 (20.124; 1.568) 0 0.399 (20.124; 1.568) DZb(S) reactivity 0.400 (20.125; 1.575) 0 0.400 (20.125; 1.575) aPosterior mode and the upper and lower bound of the 95% credibility interval are presented, and elements significantly different from zero. 4. Discussion Predator-induced defences are one of the most studied examples of phenotypic plasticity [2,18]. This research is grounded in a body of well-developed theory and empirical work spanning decades, debates and taxa [47,48] with daphnids forming a core body of this work. Empirical, evol- utionary ecological research with daphnids is broad and has revealed fascinating insight into plasticity in the life history [49,50], behaviour [51,52], morphology [8,19,49] and costs of plasticity [8,26,49,53–55]. Recent work as revealed detail about G  E in, and reaction norms of, morphological and other defences [8,25,56]. Despite this breadth of work, no evidence about the potential micro-evolution of morphological reaction norms has been reported. Therefore, we explored how a predator-induced, nonlinear, reaction norm of induced morphological defence might respond evolutionarily to contrasting size-selective predation regimes. (d) The micro-evolution of a predator-induced plasticity Table 4 and figure 3 highlight the predicted response to selec- tion of the reaction norm of induced morphological defence. Figure 3a captures the response of each population reaction norm assuming that only the reproduction component of the selection gradient matters. Selection driven only by reproduc- tion drives convergence of the environment-specific reaction norms towards a maximum and sensitivity that is in between that defined by a midge or a fish–midge environment. Our method, developed in the context of D. pulex ecology, involved decomposing a nonlinear, predator-induced reaction norm to three biologically relevant traits. This showed that it is possible to analyse the micro-evolution of these nonlinear reaction norms with well established, character-state tools. Our data provided a fine scale description of the reaction Figure 3b shows the result of applying a hypothetical survival-only selection gradient to the components of the reac- tion norm. Herewe see rather subtle, but theoretically expected Table 4. The response to selection (DZ) using composite selection gradients based upon different weighting of reproduction (bR) and survival (bS) selection. The multivariate response to selection is partitioned into trait-specific direct (through genetic variance), indirect (through genetic covariance) and total (using all components of G) response in the fish and midge cue treatment. (b) Covariance matters As noted above, we found a biologically meaningful negative correlation between maximum response and sensitivity to cue that represents a potential evolutionary constraint. Were this to be an accurate representation of the three traits in a larger pool of populations, combining the selection gradients with this G-matrix provides an interesting perspective on how evol- ution might act on predator-induced plasticity. When the total response of selection is decomposed to its direct and indirect effect, the relevance of the genetic covariance became clear. The significant and highly negative genetic covariance between maximum and threshold constrained the response of selection in the two different predation scenarios. The relatively large angle between b’s and DZ’s reinforced this view, because the covariance resulted in a response to selection significantly different from the direction of selection. They were similar between midge (Bagshaw) and fish–midge (Crabtree) predation scenarios, reflecting the covariance pattern. 0 0.5 1.0 1.5 2.0 0 20 40 60 80 predation risk neckteeth induction (c) DZ = GbR+ GbS Figure 3. Projected neckteeth reaction norm under midge and fish predation scenarios considering the reproduction component of selection gradient (a), the survival component of selection gradient (b) and the combined reproduc- tion and survival selection gradient (c). Differences in magnitude and orientation of linear selection gradient b and response to selection Dz. (Online version in colour.) Thus, the indirect response of selection seems to play a crucial role in the total response of selection, driving similar patterns of phenotypic response from different predation scenarios [57]. If the patterns of multivariate genetic variation we find is common, the constraint may represent an impor- tant genetic pathway underpinning local adaptation in daphnids facing multiple and variable regimes of predation risk [10,26,51,58,59]. Our data suggest that the evolution of midge-induced morphological plasticity is robust to the pres- ence of an alternate, contrasting selection pressure that does not induce the morphological change. (threshold/inflection) harbour significant genetic variation (figure 1 and table 2). The data suggest that the midge popu- lation harbours little variation in sensitivity and a fair amount in the maximum induction while the fish–midge population harbours larger variation in the sensitivity, and less in the maximum. While sample sizes are low, these data provide a template on which to explore hypotheses about micro- evolutionary change in reaction norms. (a) Evolution of a reaction norm We began our assessment of micro-evolutionary change to a nonlinear reaction norm with data showing that the maxi- mum response (asymptote) and the sensitivity to the cue Our results formalize a hypothesis that selection on survival and reproduction combine with covariance between the maxi- mum morphological response to these cues (asymptote) and 0 0.5 1.0 1.5 2.0 0 20 40 60 80 neckteeth induction midge reaction norm midge–fish reaction norm predicted response predicted response 0 0.5 1.0 1.5 2.0 0 20 40 60 80 neckteeth induction 0 0.5 1.0 1.5 2.0 0 20 40 60 80 predation risk neckteeth induction DZ = GbR (a) (b) (c) DZ = GbS DZ = GbR+ GbS Figure 3. Projected neckteeth reaction norm under midge and fish predation scenarios considering the reproduction component of selection gradient (a), the survival component of selection gradient (b) and the combined reproduc- tion and survival selection gradient (c). Differences in magnitude and orientation of linear selection gradient b and response to selection Dz. (Online version in colour.) rspb.royalsocietypublishing.org Proc. R. Soc. B 284: 201708 8 0 0.5 1.0 1.5 2.0 0 20 40 60 80 neckteeth induction midge reaction norm midge–fish reaction norm predicted response predicted response DZ = GbR (a) (b) DZ Gb We considered several ways in which selection might act on this genetic variation [41], combining empirical data on repro- duction linked to variation in defence traits with size-selective theory about patterns of survival linked to the same traits. Ourcomposite selection scenarios represent several weightings of selection linked to survival and reproduction to which a population may respond. This was combined in the multi- variate breeders equation with the constraints explicit in the G-matrix (figure 3). Our results reveal not only the potential for substantially different response to selection pattern depending on the predation risk scenario, but also how strong covariation between traits might constrain the response. 8 (a) 0 0.5 1.0 1.5 2.0 0 20 40 60 80 neckteeth induction (b) DZ = GbS Although our analysis is developed from data from only two populations, we argue cautiously about the effect of selection on population differentiation. However, previous evidence about cost of plasticity [8] and differences in pheno- typic trajectories [25] support this possibility in relation to realistic patterns of the evolution of the reaction norm. 5. Conclusion Predation is a key selective agent in aquatic and terrestrial communities. Seasonal and spatial variation in predation risk has favoured the evolution of inducible defences, a major example of phenotypic plasticity. The response of traits to predation risk is rarely effectively characterized by a linear reaction norm describing plasticity. Characterizing genetic variation and covariation in a nonlinear relationship is not trivial, but it is vital for understanding how agents of natural selection such as predators drive the evolution of Competing interests. The authors declare no competing interest. Competing interests. The authors declare no competing interest. Funding. M.J.C. was funded by CONICYT, Chile; A.P.B. and S.R.D. by NERC (NE/D012244/1) and M.I.L. by the Swedish Research Council (2016-05195). Acknowledgements. We thank Leonardo Bacigalupe, Roberto Nespolo, Mark Blows and several anonymous referees for constructive suggestions and ideas that improved the manuscript. Acknowledgements. We thank Leonardo Bacigalupe, Roberto Nespolo, Mark Blows and several anonymous referees for constructive suggestions and ideas that improved the manuscript. (b) Covariance matters Data are available from Dryad: http://dx.doi.org/ 10.5061/dryad.kr856 [72]. Data accessibility. Data are available from Dryad: http://dx.doi.org/ 10.5061/dryad.kr856 [72]. Authors’ contributions. M.J.C. designed the study, carried out the exper- iments, conducted the statistical analyses and drafted the manuscript. W.H. designed the study and carried out the exper- iments. S.R.D. and M.I.L. aided the statistical analyses and drafted the manuscript. A.P.B. designed the study, coordinated the analyses and drafted the manuscript together with M.J.C. All authors gave final approval for publication. References 1. Lima SL. 1998 Nonlethal effects in the ecology of predator–prey interactions. Bioscience 48, 25–34. (doi:10.2307/1313225) pulex and their relation to native habitat. J. Plankton Res. 28, 571–584. (doi:10.1093/plankt/ fbi142) 18. Agrawal AA. 2001 Phenotypic plasticity in the interactions and evolution of species. Science 294, 321–326. (doi:10.1126/science.1060701) 2. Tollrian R, Harvell CD. 1999 The ecology and evolution of inducible defenses. Princeton, NJ: Princeton University Press. 11. Havel JE, Dodson SI. 1987 Reproductive costs of Chaoborus-induced polymorphism in Daphia pulex. Hydrobiologia 150, 273–281. (doi:10.1007/ BF00008708) 19. Tollrian R. 1995 Predator-induced morphological defenses: costs, life history shifts, and maternal effects in Daphnia pulex. Ecology 76, 1691–1705. (doi:10.2307/1940703) 3. Bernard MF. 2004 Predator-induced phenotypic plasticity in organisms with complex life histories. Ann. Rev. Ecol. Evol. Syst. 35, 651–673. (doi:10.2307/annurev.ecolsys.35.021004. 30000024) 12. Black AR. 1993 Predator-induced phenotypic plasticity in Daphnia pulex: life history and morphological responses to Notonecta and Chaoborus. Limnol. Oceanogr. 38, 986–996. (doi:10.4319/lo.1993.38.5.0986) 20. Taylor BE, Gabriel W. 1992 To grow or not to grow: optimal resource allocation for Daphnia. Am. Nat. 139, 248–266. (doi:10.1086/285326) 30000024) 21. Hammill E, Kratina P, Anholt BR. 2008 Non-lethal presence of predators modifies morphology and movement rates in Euplotes. Hydrobiologia 621, 183–189. (doi:10.1007/s10750-008-9644-1) 4. Miner BG, Sultan SE, Morgan SG, Padilla DK, Relyea RA. 2005 Ecological consequences of phenotypic plasticity. Trends Ecol. Evol. 20, 685–692. (doi:10. 1016/j.tree.2005.08.002) 13. Repka S, Pihlajamaa K. 1996 Predator-induced phenotypic plasticity in Daphnia pulex: uncoupling morphological defenses and life history shifts*. Hydrobiologia 339, 67–71. (doi:10.1007/ BF00008914) 22. Nijhout HF. 1999 Control mechanisms of polyphenic development in insects. Bioscience 49, 181. (doi:10. 2307/1313508) 5. Pigliucci M. 2005 Evolution of phenotypic plasticity: where are we going now? Trends Ecol. Evol. 20, 481–486. (doi:10.1016/j.tree.2005. 06.001) 23. Roff DA. 1996 The evolution of threshold traits in animals. Q. Rev. Biol. 71, 3–35. (doi:10.1086/419266) 14. Sell AF. 2000 Morphological defenses induced in situ by the invertebrate predator Chaoborus: comparison of responses between Daphnia pulex and D. rosea. Oecologia 125, 150–160. (doi:10. 1007/PL00008886) 6. Dewitt TJ, Sih A, Wilson DS. 1998 Costs and limits of phenotypic plasticity. Trends Ecol. Evol. 13, 77–81. (doi:10.1016/S0169-5347(97)01274-3) 24. Svennungsen TO, Holen ØH, Leimar O. 2011 Inducible defenses: continuous reaction norms or threshold traits? Am. Nat. 178, 397–410. (doi:10. 1086/661250) 7. Relyea RA. 2002 Costs of phenotypic plasticity. Am. Nat. 159, 272–282. (doi:10.1086/338540) 15. Lass S, Spaak P. 2003 Chemically induced anti- predator defences in plankton: a review. Hydrobiologia 491, 221–239. (doi:10.1023/ A:1024487804497) 25. Dennis SR, Carter MJ, Hentley WT, Beckerman AP. 2011 Phenotypic convergence along a gradient of predation risk. Proc. R. Soc. B 278, 1687–1696. (doi:10.1098/rspb.2010.1989) 8. Hammill E, Rogers A, Beckerman AP. 2008 Costs, benefits and the evolution of inducible defences: a case study with Daphnia pulex. J. Evol. Biol. 21, 705–715. (doi:10.1111/j.1420-9101.2008.01520.x) 16. Pohnert G, Steinke M, Tollrian R. 2007 Chemical cues, defence metabolites and the shaping of pelagic interspecific interactions. Trends Ecol. Evol. 22, 198–204. (doi:10.1016/j.tree.2007. 01.005) 26. Parejko K, Dodson SI. 1991 The evolutionary ecology of an antipredator reaction norm: Daphnia pulex and Chaoborus americanus. Evolution 45, 1665–1674. (doi:10.2307/2409787) 9. Tollrian R. 1995 Chaoborus crystallinus predation on Daphnia pulex: can induced morphological changes balance effects of body size on vulnerability? Oecologia 101, 151–155. (doi:10.1007/BF00317278) 27. Lind MI, Yarlett K, Reger J, Carter MJ, Beckerman AP. 2015 The alignment between phenotypic plasticity, the major axis of genetic variation and 17. Van Donk E. 2007 Chemical information transfer in freshwater plankton. Ecol. Inform. 2, 112–120. (doi:10.1016/j.ecoinf.2007.03.002) 10. (b) Covariance matters Importantly, we found in the combined data a negative genetic correlation between the maximum response and sensitivity to the cue, defining a biologically meaningful constraint (not trade-off) of increased sensitivity (reducing threshold) and increased induced morphology (increasing maximum). We highlight that our sigmoid model of the reaction norm specifies three potential traits, motivated by capturing variation visible in figure 1 through our experimental design with several maternal lines. While such a model has been used often in work on threshold traits, the approach and insights are not defined by the model, but by the capacity to capture meaningful levels of genetic (co)variation associated with the parameters. Although our G-matrix is based only on morphological trait data from only two populations, our results align with the theory about size-selective predation [20] and thus rep- resent a plausible empirical parametrization of theory and the potential outcome of selection in natural environments. It allowed us to generate a hypothesis about ecologically driven micro-evolution of the predator-induced reaction norm of the morphological defence. It also provides a template on which one can apply theory about reaction norm evolution under more extreme selection [60]. The role of phenotypic plasticity inthe process of adaption is still a topic pushing theory and discussion [27,48,61]. However, several lines of evidence suggest that phenotypic plasticity may be an important driverof evolutionary change in heterogeneous environments [4,62–64]. Crucial to these arguments is that plasticity might facilitate the maintenance of genetic varia- tion in populations that inhabit heterogeneous environments. Phenotypic plasticity is thus a mechanism that may aid the persistence of populations, allowing for higher rates of adap- tation [27,61,65–68]. Empirical evidence related to the ability of organisms to evolve in response to biotic, agonistic inter- actions [69–71] suggest that this link between plasticity and evolvability is real. Our data add to this knowledge, showing how fine scale, multivariate predator-induced phenotypic plasticity likely influences the outcome of evolution in heterogeneous predator environments. phenotypic plasticity. Using a model system of daphnids facing predation risk from multiple predators, we show, empirically, one route to describing variation in and micro- evolutionary response of a nonlinear reaction norms. Our representation of genetic (co)variance in the reaction norm allowed us to explore the potential micro-evolutionary response of the reaction norm shaped by variable predation risk and constraints on the evolution of specific features of the reaction norm. 9 Data accessibility. 30000024) Boeing WJ, Ramcharan CW, Riessen HP. 2006 Multiple predator defence strategies in Daphnia population diversity, fitness, and mean life history. Evolution 45, 82–92. (doi:10.2307/2409484) the response to selection. Proc. R. Soc. B 282, 20151651. (doi:10.1098/rspb.2015.1651) population diversity, fitness, and mean life history. Evolution 45, 82–92. (doi:10.2307/2409484) 59. De Meester L. 1996 Evolutionary potential and local genetic differentiation in a phenotypically plastic of a cyclical parthenogen, Daphnia magna. Evolution 50, 1293–1298. (doi:10.1111/j.1558-5646.1996. tb02369.x) 10 44. Pastorok RA. 1981 Prey vulnerability and size selection by Chaoborus larvae. Ecology 62, 1311–1324. (doi:10.2307/1937295) 28. Schluter D. 1988 Estimating the form of natural selection on a quantitative trait. Evolution 42, 849–861. (doi:10.2307/2408904) 45. Brooks JL, Dodson SI. 1965 Predation, body size, and composition of plankton. Science 150, 28–35. (doi:10.1126/science.150.3692.28) 60. Chevin L-M, Lande R, Mace GM. 2010 Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory. PLoS Biol. 8, e1000357. (doi:10.1371/journal.pbio.1000357) 29. Blows MW, Brooks R, Kraft PG. 2003 Exploring complex fitness surfaces: multiple ornamentation and polymorphism in male guppies. Evolution 57, 1622– 1630. (doi:10.1111/j.0014-3820.2003.tb00369.x) 46. Lande R. 1979 Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry. Evolution 33, 402–416. (doi:10.2307/ 2407630) 30. Carpenter SR et al. 1987 Regulation of lake primary productivity by food web structure. Ecology 68, 1863–1876. (doi:10.2307/1939878) 61. Ghalambor CK, McKay JK, Carroll SP, Reznick DN. 2007 Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments. Funct. Ecol. 21, 394–407. (doi:10.1111/j.1365-2435.2007. 01283.x) 31. Reger J. 2013 The quantitative genetic basis of inducible defences and life-history plasticity in Daphnia pulex. PhD thesis, University of Sheffield. 47. Laforsch C, Ngwa W, Grill W, Tollrian R. 2004 An acoustic microscopy technique reveals hidden morphological defenses in Daphnia. Proc. Natl Acad. Sci. USA 101, 15 911–15 914. (doi:10.1073/pnas. 0404860101) 32. ASTM. 1989 Standard guide for conducting acute toxicity test with fishes, macroinvertebrates and amphibians. In Annual book of ASTM standards, pp. 379–397. West Conshohocken, PA: ASTM International. 62. Dewitt TJ. 1998 Costs and limits of phenotypic plasticity: tests with predator-induced morphology and life history in a freshwater snail. J. Evol. Biol. 11, 465–480. (doi:10.1007/s000360050100) 48. Via S, Gomulkiewicz R, De Jong G, Scheiner SM, Schlichting CD, Van Tienderen PH. 1995 Adaptative phenotypic plasticity: concensus and controversy. Trends Ecol. Evol. 10, 212–217. (doi:10.1016/ S0169-5347(00)89061-8) 63. Pfennig DW, Wund MA, Snell-Rood EC, Cruickshank T, Schlichting CD, Moczek AP. 30000024) 2010 Phenotypic plasticity’s impacts on diversification and speciation. Trends Ecol. Evol. 25, 459–467. (doi:10.1016/j.tree. 2010.05.006) 33. R Development Core Team. 2011 R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. 49. Boersma M, Spaak P, De Meester L. 1998 Predator- mediated plasticity in morphology, life history, and behavior of Daphnia: the uncoupling of responses. Am. Nat. 152, 237–248. (doi:10.1086/286164) 34. Lampert W, Trubetskova I. 1996 Juvenile growth rate as a measure of fitness in daphnia. Funct. Ecol. 10, 631–635. (doi:10.2307/2390173) 64. Thibert-Plante X, Hendry AP. 2011 The consequences of phenotypic plasticity for ecological speciation. J. Evol. Biol. 24, 326–342. (doi:10.1111/ j.1420-9101.2010.02169.x) 50. Spitze K, Burnson J, Lynch M. 1991 The covariance structure of life-history characters in Daphnia pulex. Evolution 45, 1081–1090. (doi:10.2307/2409717) 35. Hadfield JD. 2010 MCMC methods for multi- response generalized linear mixed models: the MCMCglmm R package. J. Stat. Softw. 33, 1–22. (doi:10.18637/jss.v033.i02) 65. Burger R, Lynch M. 1995 Evolution and extinction in a changing environment: a quantitative-genetic analysis. Evolution 49, 151–163. (doi:10.2307/ 2410301) 51. De Meester L. 1993 Genotype, fish-mediated chemical, and phototactic behavior in Daphnia magna. Ecology 74, 1467–1474. (doi:10.2307/ 1940075) 36. Lande R, Arnold SJ. 1983 The measurement of selection on correlated characters. Evolution 37, 1210–1226. (doi:10.2307/2408842) 66. Gomulkiewicz R, Holt RD. 1995 When does evolution by natural selection prevent extinction? Evolution 49, 201–207. (doi:10.2307/2410305) 52. De Meester L. 1989 An estimation of the heritability of phototaxis in Daphnia magna straus. Oecologia 78, 142–144. (doi:10.1007/BF00377210) 37. Lenth RV. 2009 Response-surface methods in R, using rsm. J. Stat. Softw. 32, 1–17. (doi:10.18637/ jss.v032.i07) 67. Draghi JA, Whitlock MC. 2012 Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation. Evolution 66, 2891–2902. (doi:10.1111/j. 1558-5646.2012.01649.x) 38. Brooks R, Hunt J, Blows MW, Smith MJ, Bussie`re LF, Jennions MD. 2005 Experimental evidence for multivariate stabilizing sexual selection. Evolution 59, 871–880. (doi:10.1111/j.0014-3820.2005. tb01760.x) 53. Scheiner SM, Berrigan D. 1998 The genetics of phenotypic plasticity. VIII. The cost of plasticity in Daphnia pulex. Evolution 52, 368–378. (doi:10. 2307/2411074) 54. Spitze K, Sadler TD. 1996 Evolution of a generalist genotype: multivariate analysis of the adaptiveness of phenotypic plasticity. Am. Nat. 148, S108–S123. (doi:10.1086/285905) 68. Lande R, Shannon S. 1996 The role of genetic variation in adaptation and population persistence in a changing environment. Evolution 50, 434–437. (doi:10.2307/2410812) 39. 30000024) Revell LJ, Mahler DL, Sweeney JR, Sobotka M, Fancher VE, Losos JB. 2010 Nonlinear selection and the evolution of variances and covariances for continuous characters in an anole. J. Evol. Biol. 23, 407–421. (doi:10.1111/j.1420-9101.2009.01911.x) 69. Carroll SP, Hendry AP, Reznick DN, Fox CW. 2007 Evolution on ecological time-scales. Funct. Ecol. 21, 387–393. (doi:10.1111/j.1365-2435.2007. 01289.x) 55. Stibor H, Navarra DM. 2000 Constraints on the plasticity of Daphnia magna influenced by fish- kairomones. Funct. Ecol. 14, 455–459. (doi:10. 1046/j.1365-2435.2000.00441.x) 40. Manly BFJ. 1997 RT. A program for randomization testing, version 2.0. Otago, New Zealand: Centre for Applications of Statistics and Mathematics. University of Otago. 70. Gilchrist GW, Lee CE. 2007 All stressed out and nowhere to go: does evolvability limit adaptation in invasive species? Genetica 129, 127–132. (doi:10. 1007/s10709-006-9009-5) 56. Beckerman AP, Rodgers GM, Dennis SR. 2010 The reaction norm of size and age at maturity under multiple predator risk. J. Anim. Ecol. 79, 1069– 1076. (doi:10.1111/j.1365-2656.2010.01703.x) 41. Stinchcombe JR, Agrawal AF, Hohenlohe PA, Arnold SJ, Blows MW. 2008 Estimating nonlinear selection gradients using quadratic regression coefficients: double or nothing? Evolution 62, 2435–2440. (doi:10.1111/j.1558-5646.2008.00449.x) 71. Yoshida T, Jones LE, Ellner SP, Fussmann GF, Hairston Jr NG. 2003 Rapid evolution drives ecological dynamics in a predator–prey system. Nature 424, 303–306. (doi:10.1038/nature01767) 57. Kingsolver JG, Gomulkiewicz R, Carter PA. 2001 Variation, selection and evolution of function-valued traits. Genetica 112–113, 87–104. (doi:10.1023/ A:1013323318612) 42. Blows MW, Brooks R. 2003 Measuring nonlinear selection. Am. Nat. 162, 815–820. (doi:10.1086/ 378905) 72. Carter MJ, Lind MI, Dennis SR, Hentley W, Beckerman AP. 2017 Data from: Evolution of a predator-induced, non-linear reaction norm. Dryad Digital Repository. (http://dx.doi.org/10.5061/dryad.kr856) 58. Boersma M, De Meester L, Spaak P. 1999 Environmental stress and local adaptation in Daphnia magna. Limnol. Oceanogr. 44, 393–402. (doi:10.4319/lo.1999.44.2.0393) 43. Spitze K. 1991 Chaoborus predation and life-history evolution in Daphnia pulex: temporal pattern of
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http://www.fortunejournals.com/articles/different-presentation-of-multiple-myeloma-in-bone-marrow-aspiration.pdf
English
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Different Presentation of Multiple Myeloma in Bone Marrow Aspiration
Journal of cancer science and clinical therapeutics
2,018
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1,163
Keywords: Multiple myeloma; Plasma cells; Bone marrow Keywords: Multiple myeloma; Plasma cells; Bone marrow Abstract Multiple myeloma (MM) is a malign hematologıc disorder characterized by malign proliferation of plasma cells. Bone marrow examination are necessary for diagnosis, management of disease and prognosis. There are many case of literature related that amounts and morphology of cells in bone marrow biopsy and bone marrow aspiration have an impact on survival, classification and critical management of disease. We presented a rare case of myeloma with plasma cells clustered in the bone marrow aspiration. DOI: 10.26502/jcsct.5079011 DOI: 10.26502/jcsct.5079011 J Cancer Sci Clin Ther 2018; 2 (4): 089-091 Case Report Sevtap Karaman1*, Mehmet Ali Erkurt2, İrfan Kuku3, Emin Kaya4, Ayşe Nuransoy Cengiz1, Hasan Esat Yildirim1 1İnönü üniversitesi Tıp Fakültesi İç Hastalıkları Anabilim Dalı, Malatya, Turkey 2İnönü üniversitesi Tıp Fakültesi İç Hastalıkları, Hematolojı Bilim Dalı, Malatya, Turkey *Corresponding Author: Dr. Sevtap Karaman, İnönü üniversitesi Tıp Fakültesi İç Hastalıkları Anabilim Dalı, Malatya, Turkey, E-mail: drsevtapkaraman@gmail.com Received: 25 October 2018; Accepted: 09 November 2018; Published: 15 November 2018 2. Case Report A 60 years old male patient presented with dyspnea. In the detailed system inquiries, there are inappetence and 10 weight loss in 3 months. Physical examination revealed cachectic and pale appearance. Also bilateral lung basal sounds decreased and pretibial edema was present in both legs. Bilateral pleural effusion, anemia and 4, 5 gr proteinuria in the spot urine was detected. Samples were taken from the pleural effusion and evaluated as borderline transudate and suspicious malign cytology. At the same time, echocardiography was planned and cardiac amyloidosis image taken. Then with the clinical suspect of MM either, the immunofixation of the serum and 24 hour urine were studied and or bone marrow aspiration and biopsy was planned. In the bone marrow aspiration was interesting about its clustering plasma cells view. 1. Introduction Journal of Cancer Science and Clinical Therapeutics 89 Multiple myeloma (MM) is a plasma cells dyscrasia. There are also multiple myeloma varieties that do not produce monoclonal immunoglobulins, although ıt is characterized by a proliferation of monoclonal immunoglobulin producing plasma cells. It is more frequently seen in men between sixth and seventh decades of life. Disease occurs in many ways such as persistent pain in bone, fewer, fatigue, renal dysfunction, hypercalcemia or rarely with primary systemic amyloidosis. Osteolytic lesions osteopenia, and/or skeletal complications could be seen up to 80% of patients because of the neoplastic plasma cells which proliferate in the bone marrow [1]. MM diagnose is often suspected. Monoclonal protein in blood or urine important for diagnose. Bone pain or lytic lesions, although low serum albumin level increased serum total protein, unexplained anemia, symptomatic or non-symptomatic hypercalcemia or acute renal failure could be symptoms [2]. Amyloidosis is a rare disease which consist of primary, secondary and famılıal amyloidosis. Primary systemic amyloidosis (AL amyloidosis) always associated with plasma cell dyscrasia. Amyloid deposition localized multiple organs which contains like heart, kidneys, lung, tongue, 89 J Cancer Sci Clin Ther 2018; 2 (4): 089-091 DOI: 10.26502/jcsct.5079011 salıvary gland, skin, periartıcular tissue. Multiple myleoma is a common cause of amyloidosis. In this case, our patient presented specific cardiac amyloidosis and proteinuria depended on renal involvement. J Cancer Sci Clin Ther 2018; 2 (4): 089-091 DOI: 10.26502/jcsct.5079011 DOI: 10.26502/jcsct.5079011 salıvary gland, skin, periartıcular tissue. Multiple myleoma is a common cause of amyloidosis. In this case, our patient presented specific cardiac amyloidosis and proteinuria depended on renal involvement. salıvary gland, skin, periartıcular tissue. Multiple myleoma is a common cause of amyloidosis. In this case, our patient presented specific cardiac amyloidosis and proteinuria depended on renal involvement. When clinical suspect occur, the most important step is prove the clonal bone marrow plasma cells ≥10 percent or biopsy-proven bony or soft tissue plasmacytoma [3]. In the bone marrow aspiration, plasma cells can be seen in mature, immature, anaplastic forms and in various morphological forms. Our patient was diagnosed with cardiac amyloidosis while investigating the etiology of pleural effusion. Also suspected renal involvement in the patient with proteinuria. In this report we present a case of different presentation of multiple myeloma. We underline interesting, grouped plasma cells in bone marrow aspiration [Figure 1]. Figure 1: Clustered plasma cells in bone marrow aspiration. 1. Introduction Figure 1: Clustered plasma cells in bone marrow aspiration. Journal of Cancer Science and Clinical Therapeutics 3. Discussion Journal of Cancer Science and Clinical Therapeutics 90 The amount of plasma cells in the bone marrow in multiple myeloma ranges from 10% to 90%. The morphology of these cells is also different. Plasma cells can be mature morphology or intermediate, immature or plasmablastic variant. This is important for the stage and management of the disease. There are multiple cases of myeloma whıch containing plasma cells showing several different morphologies such as Auer rod like inclusions [4], intracytoplasmic pınk inclusions [5], spindle shaped cells. But there is no publication on clustered positioning of plasma cells in multiple myeloma and the prognostıc value of this morphologic varıant is currently unclear. Unfortunately the patient of our case died one week after diagnosis. Therefore we could not monitor and treat the Journal of Cancer Science and Clinical Therapeutics 90 90 J Cancer Sci Clin Ther 2018; 2 (4): 089-091 DOI: 10.26502/jcsct.5079011 DOI: 10.26502/jcsct.5079011 patient and observe the response to treatment. In this report, we wanted to remind different forms of clinical presentation of multiple myeloma and to draw attention to grouped plasma cells in bone marrow aspiration. patient and observe the response to treatment. In this report, we wanted to remind different forms of clinical presentation of multiple myeloma and to draw attention to grouped plasma cells in bone marrow aspiration. Journal of Cancer Science and Clinical Therapeutics References 1. Sonmez M, Akagun T, Topbas M, et al. Effect of pathologic fractures on survival in multiple myeloma patients: a case control study. J Exp Clin Cancer Res 27 (2008): 11. 2. Kariyawasan CC, Hughes DA, Jayatillake MM, et al. Multiple myeloma: causes and consequences of delay in diagnosis. QJM 100 (2007): 635. 3. Rajkumar SV, Dimopoulos MA, Palumbo A, et al. International Myeloma Working Group updated criteria for the diagnosis of multiple myeloma. Lancet Oncol 15 (2014): 538. 4. Hutter G, Nowak D, Blau IW, et al. Auer rod-like intracytoplasmic inclusions in multiple myeloma. A case report and review of the literature. Int J Lab Hematol 31 (2009): 236-240. 5. Juan Zhang, Mingyong Li, Xianyong Jiang, et al. Large Pink Inclusions in Multiple Myeloma Cells. Journal of Blood Disorders, Symptoms and Treatments 2017. Citation: Sevtap Karaman, Mehmet Ali Erkurt, İrfan kuku, Emin Kaya, Ayse Nuransoy Cengiz, Hasan Esat Yildirim. Different Presentation of Multiple Myeloma in Bone Marrow Aspiration. Journal of Cancer Science and Clinical Therapeutics 2 (2018): 89-91. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license 4.0 This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license 4.0 91 Journal of Cancer Science and Clinical Therapeutics
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https://jurnal.ar-raniry.ac.id/index.php/abrahamic/article/download/16088/pdf
Indonesian
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Moderasi Beragama sebagai Pemersatu Bangsa serta Perannya dalam Perguruan Tinggi
Abrahamic Religions
2,023
cc-by-sa
7,708
MODERASI BERAGAMA SEBAGAI PEMERSATU BANGSA SERTA PERANNYA DALAM PERGURUAN TINGGI M. Anzaikhan 1, Fitri Idani 2, Muliani 3 1. Institut Agama Islam Negeri Langsa 2. Universitas Islam Negeri Ar-Raniry Banda Aceh 3. Universitas Islam Negeri Ar-Raniry Banda Aceh Correspondence: m.anzaikhan@iainlangsa.ac.id M. Anzaikhan 1, Fitri Idani 2, Muliani 3 1. Institut Agama Islam Negeri Langsa 2. Universitas Islam Negeri Ar-Raniry Banda Aceh 3. Universitas Islam Negeri Ar-Raniry Banda Aceh Correspondence: m.anzaikhan@iainlangsa.ac.id M. Anzaikhan 1, Fitri Idani 2, Muliani 3 1. Institut Agama Islam Negeri Langsa 2. Universitas Islam Negeri Ar-Raniry Banda Aceh 3. Universitas Islam Negeri Ar-Raniry Banda Aceh Correspondence: m.anzaikhan@iainlangsa.ac.id ABSTRACT Indonesia is a country that has a variety of ethnicities, cultures, and religions. Judging from these diverse backgrounds, the motto of the Indonesian state contained in the Garuda Pancasila is Bhineka Tunggal Ika. There are different mottos, but this one cannot be separated from its challenges. The challenge in question is the understanding that circulates in the midst of people's lives, causing conflict. The seeds of these ideas can emerge in the family, community, and college environment. In this case, it is necessary to have a middle ground attitude to resolve various differences and problems in society. The researcher uses a qualitative approach method with a literature study. The results of the discussion in this study are to know the definition, understanding of radicalism in the state, forms of spreading radicalism, and moderation in Islam. The researcher concludes that the challenges of a country's diversity can be overcome by cultivating an attitude of moderation so that it can become a unifying nation, especially in the university environment. Keyword: Religion, Moderation, Radicalism Info Publikasi: Artikel Kajian Library Research Sitasi Cantuman: M.Anzaikhan, et all. (2023). Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi. Abrahamic Religions: Jurnal Studi Agama- Agama (ARJ), 3(1), 17- 34. DOI: 10.22373/arj.v3i1.16088 Hak Cipta © 2023. Dimiliki oleh Penulis, dipublikasi oleh ARJ Dikirim: Januari 2023 Direview: Februari 2023 Dipublikasi: Maret 2023 Dikirim: Januari 2023 Direview: Februari 2023 Dipublikasi: Maret 2023 Dikirim: Januari 2023 Direview: Februari 2023 Dipublikasi: Maret 2023 https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 17 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) ABSTRAK Indonesia merupakan negara yang memiliki aneka ragam suku, budaya, serta agama. Dilihat dari latar belakang yang beranekaragam tersebut sangat ideal jika semboyan negara Indonesia yang terdapat pada garuda Pancasila yaitu Bhineka Tunggal Ika. Adanya semboyan berbeda-beda tetapi tetap satu ini tidak lepas dari tantangannya. Tantangan yang dimaksud seperti paham paham yang beredar di tengah-tengah kehidupan masyarakat sehingga menimbulkan konflik. Bibit paham-paham itu dapat muncul dalam lingkungan keluarga, masyarakat, serta perguruan tinggi. Dalam hal tersebut diperlukan adanya sikap jalan tengah untuk menyelesaikan berbagai perbedaan dan masalah dalam kalangan masyarakat. Peneliti menggunakan metode pendekatan kualitatif dengan studi kepustakaan. Hasil dari pembahasan dalam penelitian ini adalah mengetahui tantangan keberagaman Indonesia, pemahaman radikalisme dalam negara, bentuk penyebaran radikalisme, serta moderasi dalam Islam. Peneliti menyimpulkan bahwa tantangan keanekaragaman sebuah negara dapat diatasi dengan menumbuhkan sikap moderasi sehingga dapat menjadikan pemersatu bangsa terutama dalam lingkungan perguruan tinggi. Kata Kunci: Agama, Moderasi, Radikalisme 18 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi B. Metode Penelitian Artikel ini tergolong dalam penelitian pustaka dengan pendekatan kualitatif. Adapun metodologi yang digunakan adalah studi deskriptif analisis. Sumber rujukan yang digunakan adalah referensi literasi seperti buku dan jurnal terkait moderasi beragama. Langkah yang dilakukan dalam proses studi kepustakaan yakni dengan mengumpulkan sejumlah data yang berkaitan dengan persoalan moderasi beragama. Data inilah yang nantinya dipakai dan disesuaikan untuk ditambahkan atau dicantumkan ke dalam tulisannya. Sehingga data yang merupakan data yang valid atau data yang benar-benar bisa dipertanggung jawabkan kebenarannya karena sesuai dengan referensi yang ada. ideologi negara yang sudah menjadi suatu kesepakatan besama. Tidak hanya itu, ada juga yang dinamakan jihad agama untuk megkafirkan sesama. ideologi negara yang sudah menjadi suatu kesepakatan besama. Tidak hanya itu, ada juga yang dinamakan jihad agama untuk megkafirkan sesama. Inilah yang terjadi di Indonesia, walaupun sudah ada Pancasila sebagai dasar negara dan Bhineka Tunggal Ika sebagai motto negara, hal ini merupakan fakta yang dihadapi. Oleh karena itu masyarakat Indonesia harus respontif, salah satunya adalah dengan cara menumbuhkan sikap moderasi beragama. Artikel ini tergolong dalam penelitian pustaka dengan pendekatan kualitatif. Adapun metodologi yang digunakan adalah studi deskriptif analisis. Sumber rujukan yang digunakan adalah referensi literasi seperti buku dan jurnal terkait moderasi beragama. A. Pendahuluan: Indonesia merupakan negara kepulauan yang berada di antara dua benua dan dua Samudra. Terbentang dari Sabang sampai Merauke dengan berjajar pulau-pulau yang memiliki budayanya masing- masing. Kondisi geografis tersebut membuat Indonesia dikenal sebagai negara multikultur yaitu negara yang kaya akan keanekaragaman seperti suku, agama, ras, antar golongan (Lestari, 2016) Sejalan dengan lambang negara Indonesia Garuda Pancasila dengan semboyan Bhinneka Tunggal Ika tentunya menjadi way of life masyarakat Indonesia untuk hidup berdampingan dalam perbedaan. Kekayaan etnis dan budaya yang variatif ini merupakan rahmat dari Tuhan yang luar biasa. Meski begitu, dalam sebuah kebaikan selalu ada fenomena dan tantangan. Tantangan yang dimaksud seperti konflik yang sering terjadi di tengah-tengah kehidupan bermasyarakat. Dilihat dari segi kepercayaan, ada 6 agama yang diakui oleh pemerintah Indonesia. Namun, mayoritas masyarakat Indonesia beragama Islam. Agama lain yang di akui oleh pemerintah Indonesia yaitu Kristen Protestan, Kristen Katolik, Hindu, Budha, dan Konghuchu. Melaui keragaman agama ini, pemerintah Indonesia membebaskan masyarakat untuk memeluk agama sesuai dengan keyakinan masing-masing. Senada dengan sila pertama Pancasila yaitu Ketuhanan Yang Maha Esa mengajarkan masyarakat untuk memiliki sikap toleransi antar umat beragama dan tidak memaksa seseorang untuk memeluk agama tertentu. Adanya sila pertama Pancasila bukan berarti masyarakat Indonesia selalu hidup rukun dengan azas toleransi. Sikap toleransi ini tidak sepenuhnya dijalankan oleh semua masyarakat Indonesia, karena ada juga masyarakat yang memiliki cara pandang tersendiri tentang masalah agama. Ada yang ingin membangun tempat ibadah dengan mengikuti persyaratan dan ketentuan tertentu namun dikarenakan mayoritas agama di daerah setempat tidak setuju, terjadilah konflik. Ada yang menolak pemimpin dikarenakan berbeda agama. Kemudian ada juga yang mengatas nama kan agama untuk menggantika https://jurnal.ar-raniry.ac.id/index.php/abrahamic C. Islam Moderat Moderat dilihat dari sudut tertentu memiliki dua penafsiran yaitu tidak bersifat ektrim dan memilih jalan tengah yang tidak merugikan kedua belah pihak (Kamisa, 1997). Islam moderat merupakan Islam yang di dalamnya terintegrasi nilai-nilai ketaatan kepada Allah, cinta perdamain serta menjunjung tinggi rasa keamanan (Syu‘aibi, 2010). Islam moderat umumnya dikatakan antonim dari Islam radikal yakni golongan Islam yang keras dan anti toleran dan dapat merusak keberagaman umat. Oleh karena Islam yang ektrim telah membuat sebuah citra tidak nyaman bagi golongan tertentu maka dipopulerkanlah istilah muslim moderat yang diistilahkan Islam moderat sebagai solusi. Harapannya, agar citra Islam di mata dunia tidak dilabelkan radikal, teroris, dan sejenisnya. Moderat berasal dari kata moderare yang memiliki makna mengurangi atau mengontrol (Faiqah & Pransiska, 2018). Selanjutnya, Islam moderat diproyeksikan sebagai solusi agar umat Islam dapat bersikap atau berperilaku tidak ekstrem dengan mengedepankan jalan tengah. Tengah disini tentu bersifat majas, intinya dapat bersikap adil serta seimbang yang kerap populer dinamakan Islam Wasathiyah. Penulis sendiri memaknai wasathiyah, tidak sebatas kaku pada sesuatu yang berada ‘di pertengahan’. Seperti jenjang pendidikan misalnya, antara S1 dan S3 dimensi tengahnya adalah S2, namun S2 bukanlah yang terbaik dalam orientasi pendidikan. Wasathiyah atau yang populernya disebut jalan tengah (moderat), merupakan keunikan yang ada dalam ajaran Islam sebagai agama rahmatan lil alamin. Konsep ini menebarkan nilai-nilai solutif dimana dalam berdakwah (menyebarkan ajaran Islam) https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 19 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) dilakukan dengan santun, toleran, dan tidak memaksakan (Nur & Lubis, 2015). Toleransi pada hakikatnya adalah kesediaan diri untuk menjaga perasaan terhadap perilaku orang lain. Orang yang memiliki sikap toleransi yang tinggi akan lebih mudah memaafkan orang lain. Dalam kehidupan bermasyarakat toleransi sering dimaknai dengan sikap tenggang rasa. Hal itu karena toleransi dan tenggang rasa sama sama memiliki arti menghormati antara satu kelompok terhadap kelompok lain. Sepintas sama, akan tetapi dalam dalam mengimplementasikan dalam kehidupan sehari-hari memiliki perbedaan. Sikap toleransi merupakan cara menjaga perasaan seseorang terhadap perbuatan orang lain. Orang yang tidak memiliki sikap toleransi biasa disebut fanatik. Sedangkan tenggang rasa merupakan cara menjaga perasaan orang lain terhadap perbuatan seseorang. Orang yang tidak memiliki sikap tenggang rasa disebut sebagai sikap ignorance (Hannan, 2018). 20 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi C. Islam Moderat Oleh karena itu, sikap toleransi dan sikap tenggang rasa memiliki makna yang berbeda sebagaimana penerapannya dalam Islam yang multikultur. Islam multikultur adalah kesiapan dalam diri seseorang untuk menerima segala seuatu yang ada dalam diri orang lain secara sama, tanpa memperhatikan perbedaan (Mujiburrahman, 2013). Islam amat sering diartikan sebagai tunggal bukan multikultur. Padahal, di Indonesia Islam multikultur sangat melekat dari segi lokal maupun sejarahnya. Pada khazanah keindonesiaan, terbagi manjadi Islam tradisional dan Islam modern. Adapun dari aspek historis, Islam hadir di Indonesia tidak terlepas dari catatan sejarah khususnya perjalanan masuknya Islam ke Nusantara. Selanjutnya, multikulturalisme sangat bermanfaat bagi umat manusia untuk mencapai sebuah kehidupan yang damai. Seiring berjalannya waktu, hal itu tercemarkan oleh orang-orang yang memiliki sikap intoleran, bahkan radikalisme. Hal tersebut dapat diatasi apabila seseorang dapat menjadikan iman serta ketaqwaan yang beraktualisasi sebagai realitas kehidupan berbangsa dan bernegara. Dengan demikian dapat dinyatakan bahwa Islam moderat dan Islam multikultur merupakan sikap yang mencari jalan tengah. Sebuah sikap keberagaman yang tidak menyetujui adanya cara kekerasan dalam memperjuangkan cita-cita Islam. Sebaliknya justeru lebih memilih cara menghargai perbedaan dengan memandang Islam sebagai agama pembawa rahmat dan keselamatan. dari mereka memandang remeh penganut agama lain, sampai menjelek-jelekkan penganut agama lain. Padahal, setiap pemeluk agama mempunyai keyakinan (truth claim) bahwasanya agama yang mereka anut mempunyai kebenaran dan membawa keselamatan. Memiliki kesadaran akan realitas ini adalah bagian penting dalam menyelami pentingnya tolerasi dalam beragama. Begitu juga, setiap agama memiliki pemahaman yang berbeda, adalah karakteristik dari agama masing masing. Perbedaan dapat dijadikan sebagai anugrah, namun dapat juga menjadi permasalahan. Bisa menjadi anugrah bagi banyak orang jika dapat memahami mengelolanya dengan baik dan dapat menambah makna dalam kehidupan. Sebaliknya, dapat menjadi permasalahan bila tidak mau memahami perbedaan yang ada dan tidak mau untuk bertoleransi. Seseorang yang memiliki sikap keberagaman khusus yang mau mengakui pembenaran suatu pihak, namun dapat menyebabkan perselisihan antar agama. Permasalahan yang muncul di Indonesia sering kali berangkat dari keberagaman, baik yang sifatnya sepele maupun riskan. Padahal, agama adalah kedamaian, penyejuk, menjadi harapan dari kebahagian, namun masih saja ada yang menjadikan agama sebagai motif perselisihan dengan cara pandang yang keliru. Berdasarkan pernyataan ini untuk membangun sebuah kerukunan bukan hal yang mudah, membutuhkan kebijak sanaan dan trategi yang lebih, dan membutuhkan pendekatan yang terstruktur, baik bersifat teologis maupun sosiologis. Modal sosial menjadi pokok utama yang dibutuhkan dalam membangun kerukunan antara masyarakat. Para ahli menyatakan kondisi damai dalam masyarakat dapat tercipta dan dibantu dengan adanya modal sosial. Beberapa pendapat mengatakan semakin erat hubungan sosial antara sesama masyarakat akan kecil peluang terjadinya tindakan kekerasan. Modal sosial yang paling penting merupakan hubungan keterlibatan antara sesama masyarakat sehingga menumbuhkan sikap saling mempercayai satu sama lain, jika semakin erat hubugan antar sesama masyarakat maka kemungkinan untuk bekerja sama akan semakin luas dan mencapai tujuan yang diharapkan akan terbuka lebar. Selanjutnya, dapat menurunkan potensi kerusuhan di kalangan masyarakat. Hubungan tersebut termasuk hubungan formal dan hubungan informal. Asosiasi merupakan salah satu bentuk hubungan formal, hubungan informal yaitu seperti saling silaturahmi, makan-makan bersama, menyapa dijalan, kumpu-kumpul bersama dan sebagainya. Jika semakin terjalin hubungan kekeluargaan dalam masyaraat, semakin mudah untuk menjadi sebuah modal dalam menciptakan situasi sosial yang damai. Hubungan antara kelompok warga yang saling berpartisipasi dan bekerjasama dapat mencegah kerusuhan. Hubungan formal yang terjalin di pedesaan mungkin mampu untuk menjaga korelasi di pedesaan namun hal tersebut tidak berlaku di kehidupan kota. Kota besar sangat membutuhkan hubungan kekeluargaan formal agar menghargai keberagama antar etnis yang ada sehingga dapat terciptanya hubungan yang damai. D. Moderasi dalam Agama-Agama Realita Indonesia sendiri didominasi oleh macam macam agama, selanjutnya setiap agama memiliki pengikutnya masing-masing. Kemudian ada yang membuat komunitas masing-masing yang berdasarkan agama yang dianutnya. Faktor sosial dan budaya dapat memperlihatkan bagaimana suasana keberagaman agama di Indonesia. Begitu pula pendidikannya, setiap agama memiliki tingkatan pendidikan yang berbeda, kesenjangan itu mempengaruhi dimensi ekonomi sehingga adanya kelas-kelas dalam masyarakat. Belum lagi adanya budaya yang variatif, menjadikan moderasi beragama adalah sebuah kebijakan ideal meskipun ke depan diformulasikan dengan nama yang berbeda. Indonesia memiliki macam agama-agama, dalam prakteknya ada yang merasa canggung ketika berhadapan dengan orang-orang yang berbeda keyakinan. Kebanyakan https://jurnal.ar-raniry.ac.id/index.php/abrahamic Permasalahan umum terjadi karena kurangnya kearifan dalam golongan masyarakat dan tipisnya sudut publik, ikatan warga dapat lemah dari dua hal tersebut. Penyebab lain dari melemahnya ikatan antara warga adalah faktor historis, politik, https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 21 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 ekonomi, dan budaya, hal ini dapat menimbulkan permasalahan atara masyarakat yang bergeser dari pertegangan individu ke permasalahan umum, permasalahan etnis dan agama pun ikut dijurumuskan karena hal tersebut. ekonomi, dan budaya, hal ini dapat menimbulkan permasalahan atara masyarakat yang bergeser dari pertegangan individu ke permasalahan umum, permasalahan etnis dan agama pun ikut dijurumuskan karena hal tersebut. Harmonis sosial dapat terwujud dari hubungan yang baik antara penganut beragama terutama dalam masyarakat. Cerita atau pencumplikan dari masyarakat tidak dapat dijadikan sebagai usaha untuk meningkatkan perdamaian antara masyarakat beragama, akan etapi diperlukan keterlibatan yang aktif, ialah mengethui adanya agama lain dan haknya namun bukan itu saja yang ditentukan oleh pemeluk agama, akan tetapi di tuntut untuk saling memahami perbedaan yang dilakukan dengan cara interaksi sosial. Selanjutnya, menegakkan bhineka tungal ika seperti yang diharapkan. Berbagai agama yang masuk di Indonesia dan diterima dalam kalangan masyarakat, hal tersebut merupakan sejarah yang pernah dilewati Indonesia padahal pada saat itu sebagian masyarakat sudah memiliki agama. Sejarah yang paling lama mengatakan bahwa mereka tetab berinteraksi, interaksi tersebut tidak menimbulkan permasalahan diantar mereka. Sikap tersebut dapat tercerminkan karena adanya sifat toleran yang tinggi diantara mereka. Maka dari situlah mereka dapat hidup saling melengkapi dan menerima perbedaan. Sifat moderat yang menjadi pegangan agama mereka masing-masing sehingga mereka dapat menjalankan hidup secara berdampingan. Agama lain juga ciptaan Tuhan yang patut di lindungi dan dihargai ini merupakan sudut pandang kelompok dari moderat. Kelompok moderat berpandangan bahwa keaneka ragaman ialah sunatullah, harmonis sosial-sosial dapat terimplementasikan dengan mengedepankan sifat toleransi dan saling menghargai (Kementrian Agama RI, 2019). 22 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi Maka muncullah pernyataan yang mengatakan bahwa apapun yang tidah bersesuain dengan aqidah ialah berlawanan dari ajaran Islam, kelompok yang mengatakan hal seperti itu dikenal dengan istilah takfiri (pengkafiran). Kelompok tersebut menyebarkan agama Islam dengan cara yang berlawanan dari metode dakwah yang diterapkan oleh ulama. Gerakan seperti ini sudah muncul di negara Indonesia. Penyebab utama hadirnya gerakan semacam ini adalah sikap protes mereka tentang penolakan ideologi dan politik yang tidak sesuai dengan paham ajaran Islam yang mereka anut. (Muna, 2020) Sehingga muncullah aksi terror meneror. Seperti munculnya bom bunuh diri, mencelakai banyak orang dengan topeng agama. Aksi radikalisme yang terjadi pada negara Indonesia merupakan sesuatu yang mengharapkan dapat mengubah mutu yang sudah menjadi kebiasaan masyarakat dengan sepenuhnya dengan melakukan suatu tindakan ekstrim. Saat ini terorisme sasarannya perlahan lahan sudah mulai mengalami penyusutan dikarenakan aparat kepolisian dan fasilitas negara yang kurang (Mohan & Hakim, 2022). Bom bunuh diri bukan merupakan salah satu aksi teror, selain itu hal lain seperti melakukan penganiayaan pada sekelompok agama lain adalah bentuk radikalisme secara soft action. Tidak hanya itu, akibat pesatnya perkembangan teknologi, radikalisme berubah pada muatan yang berbeda yaitu hoaks dan ujaran kebencian terhadap penganut agama berbeda. Bila merujuk pada rentetan sejarah Indonesia, kasus penolakan pembangunan greja juga sering terjadi. Seperti kejadian di Banten dan Jawa Barat, pada saat itu masyarakat Islam memberi respos yang buruk sebagi bentuk penolakan dibangunya greja dilingkungan setempat, karena kebanyakanpenduduk di wilayah tersebut adalah Muslim sehingga mereka merasa tergangu jika ada greja di lingkungan tersebut (Siahaan, 2017). Negara Indonesia memiliki dominasi Muslim, realitas itu kerap menjadi alasan untuk non-Muslim terdiskreditkan. Setelah di telusuri, penyebab terjadinya pemberontakan yang utama adalah masyarakat yang mayoritas Islam merasa terganggu dengan kehadiran eksistensi agama lain. Maka dari itu, agama-agama minoritas sering kali tidak diterima oleh masyarakat apalagi jika sudah menyangkut pembangunan tempat ibadah. Selanjutnya, agama minoritas harus mengakui kekuatan masyarakat yang mayoritas. Penduduk Islam Indonesia memiliki tantangan yang sangat kuat berdasarkan dari pernyataan diatas,apalagi mengenai kebebasan dan toleran (Winarti, 2017). Pada saat gelora politik di dunia pluralisme Indonesia mendapat ujian dengan negara yang menganut sistem demokrasi, semua warganegara dapat untuk menentukan sikap dam memiliki kebebasan atas hak tersebut yang bersifat sosial maupun ekonomi dan politik kebersatuan bangsa dan pemersatuan merupakan dampak dari hal tersebut. Kerenggangan yang terjadi antara perbedaan agama dapat memengaruhi ketentraman sosial. E. Tantangan Moderasi di Indonesia Indonesia mempunyai banyak budaya dan adat istiadat yang memiliki ciri khas masing-masing. Hubungan yang telah terjalin menjadi kunci dari dinamika kehidupan sosial yang sudah melekat. Realitas yang terjadi di kehidupan masyarakat adalah mereka saling berinteraksi antar agama, mulai dari tingkatan bertetangga satu komplek sampai tingkat nasional (Fuad, 2020). Kenyataan tersebut menunjukkan bahwa kebijaksanaan yang ada pada masyarakat Indonesia mepunyai suatu tujuan yang sama, yaitu dapat memberi manfaat satu sama lain dan untuk menciptakan kehidupan sosial yang bersamaan. Akan tetapi tidak sedikit muncul paham-paham yang bertentangan dengan hal tersebut. Saat ini sudah muncul pandangan pandangan subjektif yang berasal dari sekelompok agama Islam sendiri yang menfonis bahwa aqidah ummat Islam di Indonesia sudah melampaui batasan (Fathurrochman & Muslim, 2021). Hal tesebut merupakan suatu fenomina sosial yang pada kenyataannya banyak yang bernggapan bahwa ajaran agama Islam di Indonesia sudah dipengaruhi oleh budaya lokal yang dikenal dengan sebutan bid`ah, bukan hannya ummat Islam yang mendapat pernyataan seperti iti akan tetapi agama yang lain juga mendapat hal yang sama. https://jurnal.ar-raniry.ac.id/index.php/abrahamic | F. Hakikat Radikalisme Kata Radikal dapat di artikan amat keras, hal politik, dan sempurna. Sedangkan Radikalisme terdapat beberapa definisi Suatu paham yang bersifat radikal dalam politis. Radikalisme juga diartikan sebagai paham yang menginginkan perubahan atau https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 23 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) pembaharuan sosial dan politik dengan cara kekerasan. Selain itu radikalime juga dapat diartikan sebagai sebuah sikap yang ekstrem disuatu aliran politik. (Kamisa, 1997). Dalam kehidupan bermasyarakat terdapat beberapa kesalahpahaman dalam memahami makna kata radikal. Hal itu yang menyebabkan terdapat berbagai macam hal dalam memaknai kata radikalisme. Dalam Kamus Besar Bahasa Indonesia kata radikal memiliki arti yang bermakna positif dan bermakna negatif. Radikalisme dalam makna positif merupakan sebuah upaya dalam mencari jalan penyelesaian dengan benar secara dalam serta mendasar hingga ke akar-akarnya. Sedangkan radikalisme dalam makna negatif merupakan sebuah paham yang menginginkan adanya perubahan dengan cara kekerasan. Dengan begitu dapat disimpulkan bahwa radikalisme dapat bermakna positif maupun negatif. Radikalisme yang bermakna negatif dapat dilihat pada seseorang yang memiliki sikap intoleran. Intoleran merupakan sebuah sikap yang tidak mau menghargai pendapat dan keyakinan orang lain. Sikap ini dikenal dengan kebalikan dari sikap toleransi. Selain itu ada juga fanatik. Sebuah sikap dimana kelompoknya merasa paling benar serta menganggap kelompok lain salah (Muthohirin, 2015). Kelompok yang terbiasa membedakan diri dari umat Islam lainya, dan menggunakan cara kekerasan untuk mencapai tujuan tertentu. Hal tersebut merupakan ciri-ciri kelompok yang memiliki paham radikal. Jika paham radikalisme sudah berkembang lebih lanjut akan mendorong seorang untuk berperilaku teroris. Terorisme ini tidak semata-mata terjadi begitu saja. Tetapi dengan adanya paham radikalisme yang mengubah jalan pikiran mereka. Biasanya diawali dengan sikap tidak menghargai perbedaan sampai ke sikap dimana mulai menyalahkan orang lain (Rijal, 2016). Dapat dikatakan bahwa paham radikalisme merupakan awalan dari terorisme yang bertujuan untuk mengubah sesuatu yang sudah lama menjadi kesepakatan bersama dengan tindakan dan aksi kekerasan. Jika ingin menangkal paham radialisme sehingga dapat berjalan dengan baik maka yang harus di tangani terlebih dahulu yaitu sikap intoleran nya. Jika sikap intoleran nya sudah berkurang maka radikalisme dan terorisme bisa di tanganin sejak dini. 24 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi maupun politik dengan cara menggunakan kekerasan. Sikap seperti itu bisa terdapat pada agama manapun. Namun karena mayoritas masyarakat Indonesia memeluk agama Islam maka radikalisme yang paling intens terjadi adalah dari kelompok mazhab keislaman. Radikalisme ini biasanya memiliki visi berupa ingin menggantikan dasar dan ideologi negara dengan mengutamakan syariat-syariat Islam. Tidak hanya itu, kalangan ini berfikir sempit, ekslusif dan cenderung main hakim sendiri. Menjadikan motif beragama sebagai panggilan jihad sehingga tanpa ragu berbuat sesuatu yang menghilangkan nyawa pihak lain. maupun politik dengan cara menggunakan kekerasan. Sikap seperti itu bisa terdapat pada agama manapun. Namun karena mayoritas masyarakat Indonesia memeluk agama Islam maka radikalisme yang paling intens terjadi adalah dari kelompok mazhab keislaman. Radikalisme ini biasanya memiliki visi berupa ingin menggantikan dasar dan ideologi negara dengan mengutamakan syariat-syariat Islam. Tidak hanya itu, kalangan ini berfikir sempit, ekslusif dan cenderung main hakim sendiri. Menjadikan motif beragama sebagai panggilan jihad sehingga tanpa ragu berbuat sesuatu yang menghilangkan nyawa pihak lain. Sikap radikal sering muncul dikalangan umat beragama Islam karena mayoritas agama Indonesia merupakan agama Islam. Akan tetapi tidak menutup kemungkinan bahwa dalam tempat ibadah agama lainya juga ada pandangan ekstrem yang tidak memiliki sikap toleransi terhadap keyakinan yang lain (Azra, 2019). Oleh karena itu sebagai masyarakat Indonesia harus bisa mengetahui bagaimana orang-orang yang terjangkit dengan paham radikal agar tidak sembarangan dalam menilai seseorang atau kelompok yang memiliki sikap paham radikal. Umumnya, kelompok radikal memiliki beberapa tahapan untuk menyebarkan sebuah paham. Salah satunya melalui gerakan dakwah. Dakwah sangat mudah dalam mengembangkan paham radikal seperti menumbuhkan sikap tidak menghargai perbedaan, membidah orang yang tidak memiliki keyakinan agama yang sama, serta mudah mengkafirkan orang-orang yang tidak sependapat dengan kelompoknya. Hal tersebut merupakan tahapan awal dalam menanamkan sikap radikal. Apabila hal itu terjadi dalam kurun waktu yang lama maka dapat membuat negara Indonesia yang memiliki keberagamaan ini memiliki sikap intoleran. Dengan begitu bukan berarti Gerakan dakwah itu bersifat radikal. Hanya saja kelompok-kelompok radikal menyebarkan pahamnya melalui jalur dakwah (Lukman, 2019). Gerakan kelompok radikal ada juga yang melalui gerakan politik. Gerakan politik ini ingin mengubah dan menggantikan ideologi negara dengan mnegakkan agama Islam. kelompok ini menolak sistem demokrasi yang sudah menjadi kesepakatan bersama, mengatakan dasar negara itu salah, dan harus digantikan dengan Negara Kesatuan Republik Indonesia Bersyariah. Tidak hanya itu, tindakan radikal ada juga yang melalui kelompok teroris. Kelompok ini melakukan tindakan kekerasan dengan membunuh orang lain yang berbeda agama. Mereka meyakini bahwa yang mereka lakukan itu dinamakan jihad suci (Diyani, 2019). Dalam prakteknya gerakan kelompok radikal ini bisa saja gabungan dari ketiga ciri-ciri diatas: mengkafirkan orang lain, ingin menggantikan dasar negara dan melakukan kekerasan yang mengatasnamakan jihad suci ini merupakan tindakan radikalisme yang sangat berbahaya bagi masyarakat Indonesia yang memiliki keanekaragaman, sehingga dapat mengakibatkan perecahan antar masyarakat. G. Pemahaman Radikalisme dalam Negara Sebagai negara yang memiliki keanekaragaman, Indonesia tidak hanya menganut satu agama, tetapi ada 6 agama legal sehingga di haruskan untuk saling hidup berdampingan. Hal tersebut menunjukkan pentingnya toleransi yang dalam skema Islam Wasathiyah dikenal dengan istilah thasamuh. Pada konteks keindonesiaan, implementasi thasamuh termaktu dalam esensi nilai Pancasila terutama sila ke 1 yang berlambangkan bintang. Meskipun muatan toleransi terpatrikkan dalam ideology negara, praktek di lapangan masih banyak temuan sikap dan perbuatan masyarakat yang tidak menerima perbedaan satu sama lain. Seringkali muncul kesenjangan yang menyebabkan konflik, yang pada akhirnya dapat berujung dengan tindakan-tindakan radikalisme. Tindakan radikalisme seringkali didapatkan dalam agama tertentu. Radikalisme merupakan suatu pandangan atau aliran yang ingin melakukan perubahan pada sosial https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 2 H. Esensi Radikalisme di Aceh Aceh merupakan suatu provinsi yang terletak di paling barat pulau sumatera negara Indonesia. Disini lah daerah pertama yang menerima kedatangan agama Islam tepatnya di kerajaan Samudra Pasai, Peureulak, Kabupaten Aceh Timur(Bahri, 2012). https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 2 | 25 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) Oleh karena itu, sampai saat ini Aceh dikenal sebagai pelaksanaan syari’ah Islam. Namun, pelaksaan syari’ah ini tidak sepenuhnya dijalankan seperti apa yang di harapkan. Konflik yang pernah terjadi di Aceh yaitu Gerakan Aceh Merdeka ini salah satunya disebabkan oleh perbedaan pendapat tentang hukum Islam. Hal ini mengakibatkan mereka melakukan gerakan separatisme bersenjata agar Aceh lepas dari Negara Kesatuan Republik Indonesia. Dalam kurun waktu yang lama, Aceh sudah berada dalam fase yang aman. Gerakan Aceh Merdeka berdamai dengan Pemrintah Indonesia disebabkan adanya perjanjian Helsinki ditahun 2005. Februari 2010 masyarakat Aceh dikejutkan dengan berita penangkapan sejumlah orang yang diduga teroris(Bah, 2011). Tidak sedikit masyarakat yang tidak percaya dengan hal tersebut. Masyarakat Aceh menganggap itu adalah rekayasa yang ingin menjelek-jelekkan tanah rencong saja. Media-media elektronik sering menampilkan teroris Aceh, namun ternyata nama-nama yang terlibat tidak bertradisi Aceh, dan tidak dapat berbahasa Aceh, hanya saja oknum tersebut mengku berasal dari Aceh. Aceh dikenal sebagai pusat penyebaran Islam pertama di Nusantara. Hal ini direpresentasikan dengan adanya dayah yang berkembang di Aceh. Dayah merupakan Lembaga Pendidikan tua yang tidak ada pelajaran seperti Lembaga Pendidikan umum, hanya mengaji kitab saja. Hal itu disebut juga sebagai Dayah Salafi (Marhamah, 2018). Perkembangan dayah-dayah yang ada di Aceh telah melahirkan para lulusan terbaik dari segi keagamaan yang tersebar tengah-tengah kehidupan masyarakat yang dikenal sebagai ulama dayah. Akan tetapi, satu persatu masalah menghampiri para ulama dayah salah satunya tuduhan radikalisme yaitu konflik antara kelompok Ahlisunah Waljamaa’h dan kalangan yang diklaim Salafi Wahabi. Kelompok Aswaja merupakan sekelompok pemikiran Islam dayah, sedangkan Salafi Wahabi merupakan kelompok golongan yang memahami ilmu-ilmu keislaman dari Timur Tengah. Kelompok ini mengupayakan agar ilmu-ilmu keislaman tersebut padu dengan ilmu pengetahuan modern. Kelompok Salafi Wahabi merasa bahwa pemahamannya berasal dari islam yang sebenar-benarnya. Dengan begitu, kelompok ini menganggap umat Islam yang berbeda pendapat dengannya sebagai orang yang belum memiliki keautentikkan tauhid. 26 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi pertama dan ketiga. Meskipun, pada konteks ke tiga muatannya masih bermain di bawah tanah. I. Bentuk Penyebaran Radikalisme Penyebaran paham-paham radikal berawal dari penyeludupan ke Lembaga- lembaga sekolah serta Lembaga dayah secara langsung. Hari demi hari perkembangan teknologi pun tidak bisa dipungkiri, kelompok tersebut memanfaatkan perkembangan teknologi sebagai penyebaran paham radikal seperti melalui teknologi internet, sosial media, serta layanan pesan singkat (Muslimin & Fikro, 2021). Penyebaran paham itu umumnya memiliki jaringan khusus yang bertujuan untuk menanamkan ideologi agar dapat memiliki paham yang sama. Seorang penyampai ideologi memaparkan paham- paham radikal secara bertahap. Kemudian penyampai ideologi memperkenalkan jaringan-jaringan sosial yang mendukung untuk melakukan perubahan serta memberikan alat sarana untuk serangan terorisme seperti bom bunuh diri seiring dengan mengiming-imingkan kenikmatan berupa surga di hari akhir nanti. Penyebaran ideologi secara tidak langsung memanfaatkan perkembangan teknologi lebih efektif dalam meraih suatu dukungan (Hadziq, 2019). Kelompok paham radikal juga menggunakan media cetak yang dikemas semenarik mungkin serta informasi yang menyentuh emosi agar mendorong untuk terus berfikir dalam paham radikal. Pada umumnya, penyebaran ide-ide paham radikal ada yang dilakukan melaui sarana pengajian, dan pertemuan keagamaan. Tidak semua pengajian ini menganut paham radikal. Namun, ada sebagian pengajian yang menyisipkan paham-paham radikal tanpa di sadari. Penyebaran paham radikal juga dapat melalui media elektronik, seperti televisi, film, serta pamphlet yang berisi paham radikal. Kemudian media online seperti fecebook, Instagram, whatsapp, serta beberapa media sosial lain nya juga dimanfaatkan untuk menyebarkan ide-ide radikal (Mohan & Hakim, 2022). Aksi kemanusiaan seperti demonstrasi juga bisa digunakan sebagai alat untuk menyebarkan ide-ide radikal. Dukungan terhadap suatu kelompok dapat digunakan untuk membenci kelompok lain. Hal ini biasanya menyebarkan kebencian dengan sengaja. Selain itu, pendidikan juga bisa berperan aktif dalam menyebarkan paham-paham radikal. Biasanya melalui pandangan guru yang memiliki paham radikal, kegiatan ekstrakurikuler, serta melalui kurikulum. H. Esensi Radikalisme di Aceh Para ulama dayah Aceh menginginkan agar langkah- langkah Salafi Wahabi mesti dihapuskan dari tanah rencong ini karena dikhawatirkan dapat mengkafirkan sesama Islam yang mengakibatkan pada tindakan radikalisme. Hal tersebut merupakan salah satu peristiwa konflik antara kelompok Aswaja dan Salafi Wahabi yang menunjukkan pertantangan pendapat (Yunanda, 2019). Apa yang terjadi di atas memang bukanlah gesekan yang secara jelas memuat bilai radikal dan terorisme, meski begitu esensi radikal bermain di dalamnya dalam konteks intoleran. Sebagaimana dipahami, kerukunan dalam bingkai keindonesiaan terbagi menjadi tiga dimensi; Kerukunan antara sesama agama (mazhab yang berbeda), kerukunan antara agama yang berbeda, dan kerukunan antara konsep beragama dan ideologi negara. Kasus di Aceh secara tersirat adalah bentuk intoleran dalam konteks https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 27 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) Kemudian penyampaian pendapat yang bermuat ujaran kebencian terhadap ideologi negara, UUD 1945, Bhineka Tunggal Ika, serta NKRI melalui media sosial. Menyelenggarakan kegiatan yang bertujuan untuk menghina ideologi negara, memprovokasi serta membenci sistem pemerintahan NKRI. Penggunaan atribut yang bertantangan dengan Pancasila, serta pelecehan terhadap symbol negara secara langsung maupun tidak langsung juga merupakan perbuatan yang mengarah pada radikalisme. Adapun yang harus dilakukan oleh mahasiswa jika ancaman radikalisme berkembang dilingungan perguruan tinggi yaitu dengan melakukan pencegahan. Hal ini untuk mengusir penyebaran ide-ide paham radikal serta ancaman radikalisme. Pencegahan dapat dilakukan dengan menutup media penyebaran di lingkungan perguruan tinggi (Junaidi & Ninoersy, 2021). Dekan serta Rektor dapat memanfaatkan kewenangannya dalam memutuskan paham radikal, memutuskan saluran-saluran tersebut dengan pendekatan yang lemah lembut. Seperti mengikuti secara aktif perkembangan yang terjadi di lingkungan perguruan tinggi, menekan rasa kebersamaan dalam lingkungan pergurungan tinggi, memakmurkan masjid serta tempat ibadah dalam lingkungan perguruan tinggi, Ketika tes masuk perguruan tinggi, rektor membuat kebijakan untuk melakukan test psikotes yang bertujuan untuk melihat apakah calon mahasiswa baru memiliki kepribadian paham radikal atau tidak. Kemudian, melakukan tindakan yang bertujuan untuk mempengaruhi induvidu atau kelompok agar tidak terpapar paham radikalisme. Seperti melibatkan tokoh-tokoh agama, serta aparat pemerintah untuk merangkul serta mendekati mahasiswa yang terpapar dalam paham radikal. Tidak hanya itu, mahasiswa juga perlu melakukan suatu tindakan campur tangan yang dilakukan untuk menghentikan penyebaran paham radikal serta ancaman radikalisme. Seperti apabila ada mahasiswa yang terpapar radikalisme, segera lapor ke sebuah lembaga pemerintah seperti Badan nasional Penanggulangan Terorisme Indonesia (Firman, Indriawati, & Basri, 2022). Perguruan Tinggi perlu memaparkan strategi agar tempat Ibadah, serta organisasi-organisasi yang ada dalam lingkungan perguruan tinggi tidak diseludupi oleh induvidu yang menyebarkan paham radikal. Kelompok serta induvidu yang berpaham radikal sering memanfaatkan tempat serta kumpulan pengajian untuk menyebarkan paham radikal yang biasanya melalui cara- cara tertutup. 28 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi J. Radikalisme dilingkungan Perguruan Tinggi Perguruan Tinggi merupakan tempat mahasiswa untuk mengembangkan sesuatu baik itu dalam bentuk berfikir, tindakan, bahkan jati diri. Dalam lingkungan perguruan tinggi ini pastinya memiliki mahasiswa yang majemuk, mahasiswa yang memiliki keberagaman suku, agama, serta ras. Hal ini sangat rentan dengan adanya paham radikal jika mereka memiliki sikap intoleran (Djubaedi, S, & Ahdar, 2022). Perbuatan yang dapat mengarah pada radikalisme biasanya dengan menyampaikan pendapat secara lisan maupun tulisan yang bermuat ujaran kebencian terhadap salah satu suku, agama, ras, serta antar golongan. https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 27 | 27 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 sedang mengerjakan ibadah shalat dzuhur, adik sedang menghidupkan televisi dengan suara yang keras. Kemudian ibu memberitahukan kepada adik bahwa kakak sedang shalat dzuhur, dan menyuruh adik untuk mengecilkan suara televisi. Hal ini merupakan contoh sederana menanamkan sikap toleransi terhadap anak. Sikap menghargai orang lain yang sedang melakukan ibadah. Jika suatu keluarga bisa memberikan rasa nyaman dan aman maka seorang anak dapat merasa betah untuk berada di rumah. Oleh karena itu keluarga sangat penting bagi pembentukan karakter seorang anak agar membiasakan diri untuk selalu hidup dengan sikap toleransi, menghargai pendapat orang lain, mengargai akan perbedaan yang ada, dan tidak menjelekkan orang lain. Sehingga, mereka terbiasa menanamkan sikap tersebut Ketika mereka berada diluar rumah. K. Implementasi Moderasi Beragama dalam Mencegah Radikalisme 1. Dalam Lingkungan Keluarga Keluarga merupakan tempat yang paling awal seorang anak untuk mendapatkan pendidikan. Kedua orang tua memiliki peran untuk kehidupan anak, termasuk menanamkan sikap tenggang rasa terhadap anak (Baihaqi, 2017). Selain itu, memberikan pemahaman agama secara utuh juga sangat amat penting. Memberikan pemahaman tentang keberagaman, sehingga mereka bisa menerima akan berbedaan yang ada. Menanamkan sikap toleransi sejak dini terhadap anak juga sangat penting. Ketika kakak https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 29 3. Dalam Lingkungan Masyarakat. Indoneisa memiliki masyarakat yang majemuk, dimana terdapat keberagaman dalam suku, ras, dan agama. Moderasi agama berperan penting dalam kehidupan masyarakat yang majemuk. Artinya dalam masyarakat majemuk diperlukan sikap toleransi karena moderasi beragama sangat erat kaitannya dengan toleransi antar masyarakat dan mengedepankan sikap tenggang rasa. Misalnya, seseorang kedatangan tetangga yang baru saja pindah kesebelah rumahnya. Kebetulan orang tersebut dari suku dan agama yang berbeda. Agar menciptakan moderasi dalam agama diharus menumbuhkan sikap toleransi, dan menerima mereka menjadi tetangganya (Fuad, 2020). Kesediaan menghormati, dan menerima mereka seperti itu bukan berarti saling menukarkan aqidah dan keyakinan. Namun lebih mencari ke titik temu, dari pada membesar-besarkan perbedaan. Sebagian masyarakat yang berada dikehidupan majemuk ini pastinya ada beberapa masyarakat yang memiliki sikap fanatik dalam memahami sesuatu. Hal ini dapat menimbulkan konflik yang bisa menghancurkan keharmonisan kehidupan dalam bermasyarakat. Oleh karena itu, implementasi moderasi beragama masyarakat Indonesia yang majemuk sangat penting agar terhindar dari hal-hal yang berbau perpecahan. Penyuluh agama merupakan salah satu anggota dari Kementerian Agama Republik Indonesia. Penyuluh Agama adalah seseorang yang mempu memberi arahan, serta bimbingan dari pemerintah dalam menyampaikan pesan-pesan agama maupun program pemerintah (Akhmadi, 2019). Penyuluh agama memiliki peran penting dalam lingkungan masyarakat sebagai patokan atau tokoh agama dalam masyarakat karena berdasarkan ucapan dan tindakan yang berulang-ulang akan menjadi contoh dalam menhadapi kehidupan sosial dalam sehari-hari. Adapuun peran penyuluh agama sebagai pemberi edukasi terhadap masyarakat melalui juru dakwah. Mereka menyampaikan penerangan tentang agama dan mendidik masyarakat dengan baik sesuai dengan ajaran-ajaran agama. Selain itu, penyuluh agama juga dapat berperan sebagai bertukar pikiran dalam menghadapi persoalan-persoalan yang ada dalam masyarakat. Dalam menyampaikan edukasi dalam menangkal radikalisme, penyuluh agama membutuhkan sikap moderasi beragama, yaitu sikap yang tidak memvonis dirinya atau kelompoknya yang paling benar, tidak menggunakan paksaan serta kekerasa, dan tidak melakukan Kerjasama dengan kepentingan politik (Asmara, 2021). Penyuluh agama dapat mengambil tempat dalam bagian moderasi beragama, sehingga dapat menghadirkan kedamaian, membangun masyarakat yang toleran, mengedepankan sikap tenggang rasa melalui kegiatan edukasi penyuluh agama. Oleh karena itu, penyuluh agama sangat berperan penting dalam menumbuhkan sikap moderasi beragama agar paham radikal dapat dicegah dalam lingkungan masyarakat. 2. Dalam Lingkungan Pendidikan Selain dalam lingkungan keluarga, lingungan pendidikan juga sangat penting dalam menanamkan sikap moderasi. Dalam pelajaran Pendidikan Kewarganegaraan sudah dipaparkan bahwa Indonesia memiliki keberagaman mulai dari suku, agama, ras, dan antar golongan yang di dasar kan dengan Pancasila dengan motto Bhineka Tunggal Ika (Adiwilaga, 2020). Peran guru sangat penting dalam menyampaikan hal-hal yang berkaitan dengan keberagaman. Guru-guru harus menyiapkan diri agar menjadi pendidik yang sangat benar untuk mendidik. Semua guru harus diberikan wawasan tentang kebangsaan agar nilai-nilai kebangsaan dapat tersampaikan kepada murid dengan bahasa yang sederhana sehingga mudah dipahami. Misalnya, ketika guru sedang memaparkan materi tentang keberagaman yang ada di Indonesia, tentunya seorang guru yang paham akan nilai-nilai kebangsaan akan menjelaskan bagimana hidup dengan masyarakat yang majemuk, dimana terdapat banyak sekali perbedaan. Seperti, suku, ras, budaya, dan agama. Hal ini dapat membentuk karakteristik murid yang menerima dan menghargai akan kearifan lokal. Kemudian dalam lingkungan perguruan tinggi merupakan tempat dimana terdapat mahasiswa yang plural. Yakni mahasiswa yang terdiri dari suku, ras, agama yang berbeda-beda. Lingkungan perguruan tinggi merupakan tempat akan pengembangan dalam hal pemikiran, tindakan, dan segala sesuatu yang bermanfaat bagi masyarakat. Hal ini membuatnya memiliki peran penting dalam menjaga persatuan bangsa. Dalam lingkungan perguruan tinggi diharapkan dapat menciptakan kerukunan bangsa dengan menanamkan sikap toleransi dalam kehidupan (Djubaedi dkk., 2022). Toleransi dimaksud yaitu saling menghargai pendapat sesama umat beragama dan antar umat beragama, kemudian harus mampu menciptakan upaya untuk bersatu dalam kehidupan bernegara. Dalam lingkungsn orgnisasi atau kelompok belajar pun harus menumbuhkan sikap tenggang rasa yang mengajarkan untuk saling memahami satu sama lain yang berbeda. Tidak mudah menyalahkan hingga sampai pengkafiran terhadap suatu organisasi yang berbeda pandangan. Sehingga, paham radikal dapat berkurang. https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 2 | 29 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) 30 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi L. Moderasi Sebagai Pemersatu Bangsa Berbicara sejarah Islam, moderasi beragama bukanlah produk baru. Sejatinya nilai-nilau serupa sudah ada bahkan sejak masa Rasulullah Saw. Hal paling mendasar https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 3 adalah bagaimana Nabi tidak memaksakan agama Islam kepada siapapun bahkan termasuk pamannya sendiri (Abu Thalib) yang tidak menjadi Muslim hingga akhir hayatnya. Meskipun ada upaya dakwah untuk mengajak secara lemah lembut, namun tidak ada paksaan apalagi sampai menjadikan musuh atas kepentingan agama. Kenyataan ini adalah bagian dari muatan moderasi dimana Islam sangat mencintai kedamaian. Moderasi sangat penting karena dapat mengambil jalan tengah dari gesekan kemajemukan. Konsep yang dijadikan kunci untuk Islam yaitu wasathiyah agar menghasilakn pemikiran yang ideal dan praktis guna meningkatkan potensi seseorang dan mengontrol mekanisme masyarakat. Walaupun diambil dari ayat al-quran (ummatan wasatan) konsepnya, namun tetap mempunyai filosofi yang dalam. Dalam suatu agama dan tradisi yang lain juga ditemukan faktanya bahwa moderasi juga dijadikan sebagai konsep mendasar. Hal sebenarnya moderasi ialah gagasan yang universal dan mereka membenarkan gagasan tersebut. Maka konfusianime dan Islam dijadikan sebagai perbandingannya, ada banyak yang dapat untuk diteliti dan diinvestigasi dengan moderat arti filosofnya yang terdapat pada agama ataupun tradisi. Andai untuk melakukan percakapan yang membahas tentang nilai keagamaan dijadikan sebagai semboyan adakala moderasi diimbangkan untuk mendapat posisi dalam pembicaraan utama (Ibrahim & Haslina, 2018). Gerakan moderasi umat Islam jauh lebih mudah di Indonesia disebabkan pada tanah ini kapasitas moderat tercermin perilaku dan kehidupan bersosial masyarakat dengan umat Islam. Karakter Islam yang ada di Indonesia hakikatnya adalah moderat anti pada sikap yang radikal, exstrim, dan teroris, Muhammadiyah dan Nahdlatul Ulama adalah dua bentuk oragnisasi moderat Islam yang memiliki sejarah panjang. Organisasi inilah yang menjungjung moderasi antar agama sehingga mereka mampu survive bahkan sebelum Indonesia merdeka. Dalam menghadapi radikalisme Muhammadiyah sangat berpengaruh dalam mendukung adanya moderasi bahkan deradikalisme juga dikritiknya. Hal yang ditempuh bila sudah konsisten menjalankan sikap moderatharus moderat dan tidak bersikap dekontruksi, “Negara Pancasila Darul Ahdi Wasyahadah” adalah legel yang diberikan Muhammadiyah kepada negara Indonesia. Legelnya tersebut adalah bukti dari menegaskan sikap moderat negara yang bersimbolkan bhineka tunggal ika dalam menentukan posisi sifat ideologisnya yang didasari oleh undang-undang 1945 dan berdasarkan Pancasila (Nurhadi, 2017). Selanjutnya, di negara mana saja ummat Islam tidak dapat dipisah dari politik dan itu juga terjadi di Indonesia. Namun ini bukanlah sebuah sikap yang radikal/ekstrim dalam menjalankan sebuah agama. Maka dalam hal ini konteks pemahama keagamaan dikalangan ummat dalam bangsa Indonesia sangat penting supaya menghadirkan esensial esensial positif, progresif dan inklusif. Hal tersebut menjadi sebuah kekuatan untuk mempersatukan dan sebagai ruh dari kemajuan hidup. Perilaku dari politik yang melakuakan korup dapat dihalang dengan menanamkan nilai etika yang ada dalam https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 3 https://jurnal.ar-raniry.ac.id/index.php/abrahamic | | 31 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) agama dan dapat dijadikan motifasi untuk menegakkan hukum secara adil hal ini adalah bentuk dari segi sosial dan politik (Pimpinan Pusat Muhammadiyah, 2015). agama dan dapat dijadikan motifasi untuk menegakkan hukum secara adil hal ini adalah bentuk dari segi sosial dan politik (Pimpinan Pusat Muhammadiyah, 2015). Bukanlah hal yang mudah jika ingin memisahkan, ideologi, Islam, dan politik. Hal tersebut disebabkan oleh muamalah merupakan kesatuan kandungan dari dua aspek yaitu agama dan politik. Dimanapun dalam sebuah masyarakat secara umum apa lagi dalam masyarakat yang memiliki agama, politik, agama, dan ekonomi memang tidak mampu untuk dipisah bahkan mempunyai kesatuan antara ketiganya (Aljunied, 2018). Maka dari itu, karakter solutif (jalan tengah) adalah gerakan keniscayaan yang dapat merubah gesekan perbedaan menjadi ikatan persaudaraan dalam bingkai NKRI. Kesimpulan Sebagai negara dengan penduduk yang besar dan multikultural, moderasi beragama adalah ide krusial guna menghilangkan gesekan antar agama atau antar mazhab. Pada bingkai keislaman, istilah ini dikenal dengan sebutan Islam Wasathiyah yang bermakna Islam yang di tengah-tengah. Meskipun masih memiliki perdebatan antara kesamaan antara keduanya, namun pada esensinya memiliki kesamaan yang identic salah satunya adalah bagaimana bersikap thasamuh (toleran) dan thawasuth (moderat). Sejarah Islam Indonesia hari ini yang mulai eksist sejak masa kerajaan, tidak mungkin bertahan tanpa adanya muatan Islam yang moderat. Moderasi beragama sangat penting dalam mencegah disintegrasi bangsa khususnya dalam lingkungan perguruan tinggi. Hal tersebut adalah filterisasi dari oknum- oknum tak bertanggung jawab yang berusaha meracuni pemikiran mahasiswa yang cenderung emosional dan gemar melakukan aksi. Maka tidak heran, moderasi beragama sangat kentara disosialisasikan di perguruan tinggi, baik melalui mata kuliah atau kegiatan ekstrakurikuler. Pada tatanan masyarakat, moderasi beragama adalah langkah bijak dalam mencerdaskan bangsa sehingga tidak mudah terprovokasi oleh kalangan yang menyeru untuk membenci negara dengan motivasi agama. 32 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi REFERENSI Adiwilaga, R. (2020). Ketuhanan Pancasila Dan Ketuhanan Islamisme: Sebuah Tinjauan Teoritis. Jisipol, 4(1), 13. Akhmadi, A. (2019). Moderasi Beragama Dalam Keragaman Indonesia. Jurnal Diklat Keagamaan, 13(2), 11. Aljunied, A.-J. K. (2018). In Praise of Moderation Book. Cornell University Press: Southeast Asia Program Publications at Cornell University. Asmara, A. Y. (2021). Dakwah Wasathiyah Al-Islam Melalui Penyuluh Agama Islam di Kota Surakarta. Edugama: Jurnal Kependidikan dan Sosial Keagamaan, 7(1), 45– 75. https://doi.org/10.32923/edugama.v7i1.1935 Azra, A. (2019). Harmoni agama, Kebangsaan dan Pancasila. Yogyakarta: UGM. Azra, A. (2019). Harmoni agama, Kebangsaan dan Pancasila. Yogyakarta: UGM. Bah. (2011). Terpidana Teroris Kecewa Tidak Ditahan di Aceh. Serambi Indonesia. Azra, A. (2019). Harmoni agama, Kebangsaan dan Pancasila. Yogyakarta: UGM. Bah. (2011). Terpidana Teroris Kecewa Tidak Ditahan di Aceh. Serambi Indonesia. Bahri, S. (2012). Pelaksanaan Syari’at Islam Di Aceh Sebagai Bagian Wilayah Nega , ( ) y g g y g Kesatuan Republik Indonesia (NKRI). Jurnal Dinamika Hukum, 12(2). 34 | M.Anzaikhan, et all: Moderasi Beragama Sebagai Pemersatu Bangsa Serta Perannya Dalam Perguruan Tinggi Baihaqi, Y. (2017). Moderasi Hukum Keluarga Dalam Perspektif Al Qur’an. Istinbáth; Jurnal of Islamic Law, 16(2), 25. https://doi.org/10.20414/ijhi.v16i2.10 Diyani, T. (2019). Implementasi Paradigma Islam Wasathiyah; Strategi Menjaga Masa Depan Keindonesiaan. SALAM: Jurnal Sosial dan Budaya Syar-i, 6(3), 303–316. https://doi.org/10.15408/sjsbs.v6i3.13193 Djubaedi, D., S, A. B., & Ahdar. (2022). Meningkatkan Motivasi Mahasiswa dalam Membangun Jiwa Nasionalisme melalui Program Sabbatical Leave. Jurnal Abdimas Le Mujtamak, 1(2), 78–92. https://doi.org/10.46257/jal.v1i2.363 Faiqah, N., & Pransiska, T. (2018). Radikalisme Islam Vs Moderasi Islam: Upaya Membangun Wajah Islam Indonesia Yang Damai. Al-Fikra : Jurnal Ilmiah Keislaman, 17(1), 33. Fathurrochman, I., & Muslim, A. (2021). Menangkal Radikalisme Dengan Penguatan Pendidikan Karakter Nasionalisme Melalui Amaliyah Aswaja di SD Islamiyah Magetan. QALAMUNA: Jurnal Pendidikan, Sosial, dan Agama, 13(2), 801–818. https://doi.org/10.37680/qalamuna.v13i2.1071 Firman, Indriawati, P., & Basri, B. (2022). Penguatan Islam Wasathiyah melalui Organisasi Lembaga Dakwah Kampus. Jurnal Mu’allim, 4(2). https://doi.org/10.35891/muallim.v4i2.3093 Fuad, A. J. (2020). Akar Sejarah Moderasi Islam Pada Nahdlatul Ulama. Tribakti: Jurnal Pemikiran Keislaman, 31(1), 153–168. https://doi.org/10.33367/tribakti.v31i1.991 Hadziq, A. (2019). Nasionalisme Organisasi Mahasiswa Islam dalam Menangkal Radikalisme di Institut Agama Islam Negeri (IAIN) Surakarta. Jurnal Pendidikan Agama Islam Al-Thariqah, 4(1), 50–59. https://doi.org/10.25299/al- thariqah.2019.vol4(1).2791 Hannan, A. (2018). Islam moderat dan tradisi popular pesantren: Strategi penguatan Islam moderat di kalangan masyarakat Madura melalui nilai tradisi popular Islam berbasis pesantren. 13(2), 153. Ibrahim, & Haslina. (2018). The Principle of Wasaṭiyyah (Moderation) and the Social Concept of Islam. Journal Of Ilamic Sciences And Cparative Studies, 2(39), 21. Junaidi, & Ninoersy, T. (2021). Nilai-Nilai Ukhuwwah dan Islam Wasathiyah Jalan Moderasi Beragama di Indonesia. Jurnal Riset dan Pengabdian Masyarakat, 1(1), 89–100. https://doi.org/10.22373/jrpm.v1i1.660 Kamisa. (1997). Kamus Lengkap Bahasa Indonesia. Surabaya: Penerbit Kartika. Kementrian Agama RI (2019) Moderasi Beragama Jakarta: Copyright Kamisa. (1997). Kamus Lengkap Bahasa Indonesia. Surabaya: Penerbit Kartika. Kamisa. (1997). Kamus Lengkap Bahasa Indonesia. Surabaya: Penerbit Kartika. Kementrian Agama RI. (2019). Moderasi Beragama. Jakarta: Copyright. Lestari, G. (2016). Bhinnekha Tunggal Ika: Khasanah Multikultural Indonesia Di Tengah Kehidupan SARA. Jurnal Ilmiah Pendidikan Pancasila Dan Kewarganegaraan, 28(1), 7. Marhamah. (2018). Pendidikan Dayah dan Perkembangan di Aceh. Jurnal Ilmiah Pendidikan Agama Islam, 10(1), 72. Mohan, M. S. C., & Hakim, M. L. (2022). Konsep Tawassuth Sebagai Upaya Preemtif Dalam Pencegahan Aksi Terorisme (Studi Komparatif Buku Moderasi Beragama Kementrian Agama Ri Dan Undang-Undang Nomor 5 Tahun 2018). Syifa al- https://jurnal.ar-raniry.ac.id/index.php/abrahamic | 33 | 33 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) E - ISSN: 2797-6440 P - ISSN : 2797-7722 E - ISSN: 2797-6440 P - ISSN : 2797-7722 Abrahamic Religions: Jurnal Studi Agama-Agama Vol. 3, No. 1 Maret (2023) Qulub: Jurnal Studi Psikotrapi dan Sufistik, 6(2), 8. https://doi.org/10.15575/saq.v6i2.14233 Mujiburrahman. (2013). Islam Multikultural: Hikmah, Tujuan, dan Keanekaragaman dalam Islam. 7(1), 70. Muna, Moh. N. (2020). Moderate Islam In Local Culture Acculturation: The Strategy Of Walisongo’s Islamization. Islamuna: Jurnal Studi Islam, 7(2), 166–184. https://doi.org/10.19105/islamuna.v7i2.3661 Muslimin, M., & Fikro, M. I. (2021). Islam Wasathiyah dalam Perspektif Santri. Edukais : Jurnal Pemikiran Keislaman, 5(1), 1–12. https://doi.org/10.36835/edukais.2021.5.1.1-12 Muthohirin, N. (2015). Radikalisme Islam dan Pergerakannya di Media Sosial. Afkaruna, 11(2), 240–259. https://doi.org/10.18196/aiijis.2015.0050.240-259 Nur, A., & Lubis, M. (2015). Konsep Wasathiyah Dalam Al-Qur’an. 4(2), 209. Nurhadi, R. (2017). Pendidikan Nasionalisme-Agamis dalam Pandangan K.H. Ahmad Dahlan dan K.H. Hasyim Asy’ari. Cakrawala: Jurnal Studi Islam, 12(2), 121–132. https://doi.org/10.31603/cakrawala.v12i2.1716 Pimpinan Pusat Muhammadiyah. (2015). Rekonstruksi Kehidupan Kebangsaan yang Bermakna. Yogyakarta: PP Muhammadiyah. Ri, K. (2019). Lukman Hakim Saifuddin: Gagasan—Kinerja: Moderasi Beragama dan Transformasi Kelembagaan Pendidikan. Jakarta: Rehobot Literature (Bersama dengan Ditjen Bimas Kristen RI). Rijal, F. (2016). Nasionalisme Ulama Dalam Penangkalan Paham Radikal Di Kalangan Santri Dayah Tradisional Di Aceh. Kalam; Jurnal Agama dan Humaniora, 4(1), 29. http://journal.lsamaaceh.com/index.php/kalam/article/view/16 Siahaan, H. E. (2017). Mengajarkan Nasionalisme Lewat Momentum Perayaan Paskah: Refleksi Kritis Keluaran 12:1-51. DUNAMIS: Jurnal Penelitian Teologi dan Pendidikan Kristiani, 1(2), 140–140. https://doi.org/10.30648/dun.v1i2.119 Syu‘aibi, A. (2010). Meluruskan Radikalisme Islam Terj. Muhtarom. Jawa Timur: Duta Aksara Mulia. Winarti, M. (2017). Mengembangkan Nilai Nasionalisme, Patriotisme, dan Toleransi Melalui Enrichment dalam Pembelajaran Sejarah tentang Peranan Yogyakarta Selama Revolusi Kemerdekaan. Historia: Jurnal Pendidik dan Peneliti Sejarah, 1(1), 13–13. https://doi.org/10.17509/historia.v1i1.7004 Yunanda, R. (2019). Radikalisme Dalam Persfektif Islam Dayah Di Aceh. Jurnal Ilmiah Sosiologi Agama, 2(2), 140.
https://openalex.org/W4246647837
https://zenodo.org/record/1990239/files/article.pdf
English
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ALCOHOL AND PRIMITIVE MAN
British journal of inebriety
1,903
public-domain
1,021
The British Journal of Inebriety The British Journal of Inebriety 2 I 0 * “La Nouvelle Calkdonie,” 1862, p. 143 (British Museum, Press Mark 10492, a. 3). f * a La Sociologie,” zeme ed.. 1884, p. 38. V. de Rochas, op. cit., p. 128, footnote. * “La Nouvelle Calkdonie,” 1862, p. 143 (British Museum, Press Mark 10492, a. 3). f L S i l i ” d 1884 38 V. de Rochas, op. cit., p. 128, footnote. f * a La Sociologie,” zeme ed.. 1884, p. 38. The British Journal of Inebriety 21 I highly of the agricultural methods of the cannibal Neo-Cale- donians. highly of the agricultural methods of the cannibal Neo-Cale- donians. About the year 1884 I spent a month in New Caledonia as the guest of a French engineer connected with the nickel works. I cannot remember ever seeing an intoxicated native-indeed, I cannot recall seeing any case of drunkenness at all during my stay in the island, chiefly in Noumea. My host, a very energetic and intelligent man, remarked to me once : “ You Britishers kill off your natives with gin, while we kill them off with tafia.” This would be rather against de Rochas’s contention, who wrote, however, of a period earlier by more than twenty years. It is worth noting that de Rochas insists on the great frequency of phthisis and scrofula among the Neo-Caledonians. Another point of interest connected with the present subject is the history of the ‘‘ kava” or “ava” beverage of the Sandwich and other Pacific islands. It is referred to at some length in “ Cook’s Voyages.”* Captain King there states: ‘‘ . . . The Ereest are very free from these complaints, but many of them suffer still more dreadful effects from the immoderate use of ava. Those who were most affected by it had their bodies covered by a white scurf, their eyes red and inflamed, their limbs emaciated, the whole frame trembling and paralytic, accompanied by an inability to raise the head. Though this drug does not appear to shorten life, as was evident from the case of Terreeoboo, Kaoo, and some other chiefs, who were very old men, yet it invariably brings on an early and decrepit old age. It is fortunate that the use of it is made one of the peculiar privileges of the chiefs.” Captain King goes on to say : L c There is something very singular in the history of this pernicious drug. When Captain Cook first visited the Society Islands it was very little known among them. On his second voyage he found the use of it very prevalent at Ulietea, but it had still gained very little ground in Otaheite. When we were last there the dreadful havoc it had made was beyond belief, insomuch that the Captain scarce knew many of his old acquaint- ances. An abridgement of Captain Cook’s “Last Voyage,” etc.. sixth edition, t. That is, the chiefs. London, 1787, vol. ii.. p. 351 (from Captain King’s Journal). A L C O H O L A N D P R I M I T I V E M A N . BY GEORGE PERNET, M.R.C.S., L.R.C.P., Assistant to the Skin Department, University College Hospital ; English Editor of Lepvu, International Leprosy Journal. WITH reference to the interesting editorial notes on alcohol and primitive man in the October issue of the Society’s Journal, it may be pointed out that the Neo-Caledonians, unlike the old Caledonians across the Tweed, are another example of a primitive race which did not prepare a fermented drink. Dr. Victor de Rochas, who spent three years in New Caledonia at a time when the natives were unspoilt by too much civilization, and studied them carefully, wrote as follows in 1862 : Une anomalie plus r6elle c’est l’abstention de toute boisson fermentCe. Le Calk- donien presque seul, non-seulement ne compose aucune liqueur de cette nature, mais ne montre aucune appetence pour celles que lui prCsentent les EuropCens. Heureux instinct qu’il faut s’efforcer d’encourager et non pas de detruire! 11s ne boivent que de l’eau, mais une eau saine que partout les ruisseaux peuvent lui fournir.”’ Letourneaut cites de Rochas in this connexion, stating that L L seul, le NCo- CalCdonien serait rest6 jusqu’ici inaccessible B l’ivresse, et c’est une exception fort singulike,” but he does not give the reference to the passage which I have quoted from de Rochas, but to another, in which that author, in dealing with the decrease in the native population on (( l’fle des Pins,” states that “les naturels &ant en quelque sorte inaccessibles aux boissons fermentCes, celles-ci ne peuvent entrer en ligne de compte.”: It is interesting to note that de Rochas speaks The British Journal of Inebriety * The British Journal of Dermatology, vol. Xi., 1899, p, 358. The British Journal of Inebriety At the Friendly Islands it is also constantly drunk by the chiefs, but so much diluted with water that it does not appear The British Journal of Inebriety 212 to produce any bad effects. At Atooi also it is used with great moderation, and the chiefs are in consequence a much finer set of men there than in any of the neighbouring islands. Our good friends Kaireekeea and old Kaoo were persuaded by us to refrain from it, and they recovered amazingly during the short time we afterwards remained in the island.” It has been sought by some writers to identify the so-called I have endeavoured to show there was ava disease with leprosy. not sufficient evidence to support this contention.’ I may say that during a visit to the Sandwich Islands some years ago I saw very little drunkenness. According to the latest figures, the Hawaiians are certainly losing ground, but whether this is due to alcohol specially 1 am not in a position to say. For the information of some readers, kava or ava is prepared from the juice of the leaves of Piper methysticum, which are chewed in company, the chewed leaves being spat out into a common dish. * The British Journal of Dermatology, vol. Xi., 1899, p, 358.
https://openalex.org/W4200176960
https://periodicals.karazin.ua/pnmp/article/download/17684/16232
Ukrainian
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The link between mental health during the COVID-19 pandemic and the use of social media
Psihìatrìâ, nevrologìâ ta medična psihologìâ
2,021
cc-by
6,603
2021. Випуск/Issue 17 14 ISSN 2312-5675 (Print) 2021. Випуск/Issue 17 14 ISSN 2312-5675 (Print) ПСИХІАТРІЯ, НЕВРОЛОГІЯ ТА МЕДИЧНА ПСИХОЛОГІЯ PSYCHIATRY, NEUROLOGY AND MEDICAL PSYCHOLOGY 14 2021. Випуск/Issue 17 DOI: 10.26565/2312-5675-2021-17-02 УДК 616.891.6:[616.98:578.834.1]-036.2:316.77 ЗВ’ЯЗОК ПСИХІЧНОГО ЗДОРОВ’Я ПІД ЧАС ПАНДЕМІЇ COVID-19 ТА ВИКОРИСТАННЯ СОЦІАЛЬНИХ МЕРЕЖ А. В. Гайдабрус Матеріали і методи дослідження Дослідження було проведено за допомогою онлайн-опитування осіб-користувачів соціальних ме- реж, термін проведення опитування – з 15 березня 2020 року по 25 квітня 2020 року (199 учасників, серед- ній вік 31,04 ± 0,80 років) та з 10 жовтня 2020 року по 25 листопада 2020 року (152 учасника віком 27,75 ± 0,96 років). Критерії включення – користування соціальни- ми мережами принаймні півроку. Опитування скла- далося зі шкали сприйманого стресу (PSS-10) (Sheldon Cohen et al., 1983) [9] та опитувальника для виявлення генералізованого тривожного розладу (GAD-7, Spitzer, Kroenke, Williams, & Lowe, 2006) [10, 11]. Людина – істота суспільна, вона живе в суспільстві і може (і повинна) спілкуватися з членами цього сус- пільства. Без спілкування немає суспільства, без сус- пільства немає людини соціальної, розумної. Під час пандемії COVID-19 людство було обмежене у «живому» спілкуванні, що було наслідком карантинних заходів. У той же час соціальні мережі стали невід’ємною час- тиною нашого життя, вони виступають в якості засобів налагодження зв’язку, обміну емоціями, думками, ін- формацією. На сучасному етапі Facebook та Instagram є провідними платформами соціальних медіа для спіл- кування. Встановлено, що соціальні мережі є важли- вими для соціального добробуту, участі в соціальних та політичних рухах [2]. Із запровадженою політикою соціального дистанціювання віртуальне спілкування стало важливим джерелом інформації. Останні дані свідчать про збільшення використання Facebook на 37% після першого виявлення COVID-19 в усьому світі [3,4]. Ми використовували два інструменти для оцінки симптомів тривоги (GAD-7) та стресу (шкала сприйнято- го стресу). За даними Spitzer et al., 2006, вимірювання GAD-7 проводиться шляхом розгляду за шкалою від 0 до 4, та оцінювали отриману суму балів кожного рес- пондента, як «Мінімальна тривога» – до 4 балів, 5-9 як «Легка тривога», 10-14 як «Помірна тривога» і 15-21 як «Сильна тривога» (Spitzer et al., 2006). Шкала сприйманого стресу (PSS-10) вимірює рівень стресу наступним чином: від 0 до13 балів – низький рі- вень стресу, 14-26 балів – помірний рівень стресу, 27-40 балів – високий рівень стресу (Sheldon Cohen et al., 1983). Отримані дані були оброблені в програмі Excel, з ви- користанням методів математичної статистики, дис- персійного та кореляційного аналізу, “Excel” (з пакету “Microsoft Offi ce 2016”) [12]. Шкала сприйманого стресу (PSS-10) вимірює рівень стресу наступним чином: від 0 до13 балів – низький рі- вень стресу, 14-26 балів – помірний рівень стресу, 27-40 балів – високий рівень стресу (Sheldon Cohen et al., 1983). Однак поряд з позитивними сторонами, соціальні мережі мають також і негативні явища. ПСИХІАТРІЯ, НАРКОЛОГІЯ / PSYCHIATRY, NARCOLOGY / ПСИХИАТРИЯ, НАРКОЛОГИЯ ПСИХІАТРІЯ, НАРКОЛОГІЯ / PSYCHIATRY, NARCOLOGY / ПСИХИАТРИЯ, НАРКОЛОГИЯ 2021. Випуск/Issue 17 ISSN 2312-5675 (Print) 15 15 Вступ. тенденції використання соціальних медіа та наявність змін у харчуванні та режимі сну користувачів. Пандемія COVID-19 спричинила не тільки фізичні та фізіологічні проблеми. Наслідки коронавірусу торкну- лися також і психічного здоров’я. Останнім часом з’яв- ляється все більше наукових публікацій стосовно пост- ковідного синдрому, до складу якого входять депресія, тривожні розлади, суїцидальні наміри та завершені суїциди, психотичні порушення і тощо. Тож актуальність вивчення стану психічного здоров’я в умовах світової пандемії та запроваджених карантинних заходів не ви- кликає сумнівів [1]. Мета даної роботи – вивчення зв’язку між вико- ристанням соціальних мереж, стресом та тривогою під час пандемії COVID-19, а також тенденцій впливу вико- ристання соціальних медіа на харчування та режим сну користувачів. Матеріали і методи дослідження Матеріали і методи дослідження До них відно- ситься перш за все поширення дезінформації, що ви- кликає тривогу та паніку [4]. Перевантаження дезінфор- мацією та спотворення інформації впливають на рівень стресу користувачів та сприяють формуванню негатив- них психічних наслідків [3]. Дослідження, проведене в Китаї серед учасників, які зазнали впливу соціальних мереж у період COVID-19, показало, що рівень депресії та тривожності складав близько 48,3% та 22,6% [4]. Також є дані про підвищення рівню стресу [6], хронічне психологічне навантаження користувачів соціальних мереж [7], низьку самооцінку через те, що витрачають на соціальні мережі багато часу [8]. Отримані дані були оброблені в програмі Excel, з ви- користанням методів математичної статистики, дис- персійного та кореляційного аналізу, “Excel” (з пакету “Microsoft Offi ce 2016”) [12]. А. В. Гайдабрус Харківський національний університет імені В. Н. Каразіна; майдан Свободи, 6, 61022, м. Харків, Україна gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 Харківський національний університет імені В. Н. Каразіна; майдан Свободи, 6, 61022, м. Харків, Україна gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 Гайдабрус Андрій Володимирович У 2020 році світ зіткнувся з поширенням коронавірусу. Поширення інфекції визвало кризу COVID-19, а це криза як фізично- го, так і психічного здоров’я. Належне психічне здоров’я має вирішальне значення для функціонування суспільства в усі часи в кожній країні та повинно бути в приорітеті та в центрі уваги після пандемії COVID-19 в центрі реакції та відновлення після пан- демії. Психічне здоров’я та благополуччя – добробут всього суспільства, були суттєво порушені під час пандемії , і потребують термінового вивчення. Метою нашого дослідження, під час початку карантинних заходів, було з’ясувати взаємозв’язок між вико- ристанням соціальних мереж та стресом разом із тривогою під час цієї пандемії COVID-19. Під час карантину використання соці- альних мереж стало одним з джерел розповсюдження інформації. Ми шукали тенденції використання соціальних медіа, зв’язок розповсюдження соціальних мереж із  змінами в поведінці, психопатологічними симптомами, такими, як симптоми стресу, три- воги, розлади апетиту і нічного сну. Наше дослідження було проведено за допомогою інтернет-опитування осіб під час  першої та другої  хвиль  пан- демії. Дослідницька робота була направлена на розуміння взаємозв’язку між соціальними мережами та стресом під час пандемії Covid-19 та побачити динаміку змін. Всього опитано 199 учасників першого тестового періоду та 152 учасників другого тестового періоду. Ми застосували анкети, які оцінювали симптоми тривоги і стресу, а саме шкалу сприйнятого стрессу PSS-10 та тест на тривожний розлад GAD-7. Коли більшість учасників вважали, що їх використання соціальних медіа зросло під час пандемії, це призвело до збільшення сприйняття та розповсюдження недостовірної інформації (фейки), яка впливає на психологічне благополуччя. Негативні аспекти використання соціальних мереж можуть впливати на рівень тривожності та стресу населення нашої країни. Поширення фальши- вої інформації в контексті збільшення часу пошуку має всі передумови для збільшення ризику погіршення психічного здоров’я в нашій країні під час пандемії. Ключові слова: COVID-19, соціальні мережі, тривога, стрес, пандемія. Як цитувати: Гайдабрус А.В. Зв’язок психічного здоров’я під час пандемії COVID-19 та використання соціальних мереж // Психіатрія, неврологія та медична психоло- гія. – 2021. – №17. – С. 14–21. https://doi.org/10.26565/2312-5675-2021-17-02 In cites: Haydabrus A. The link between mental health during the Covid-19 pandemic and the use of social media. Psychiatry, Neurology and Medical Psychology. 2021. No 17, pp. 14–21. https://doi.org/10.26565/2312-5675-2021-17-02 © Гайдабрус А. В., 2021 2021. Випуск/Issue 17 118 (58,8%) учасників опитування першої хвилі пандемії спостерігали фейкові новини (дезінформа- цію), пов’язані з COVID-19. К ількість фейкових новин зменшилась під час другої хвилі пандемії, і 59 (39,6%) респондентів зазначили це. часто протягом останніх 2 тижнів ви відчували, що не можете швидко заспокоїтись та/або контролювати своє занепокоєння?» набрало 0,54 ± 0,06 балів під час пер- шої хвилі пандемії та 0,69 ± 0,07 під час другої хвилі пандемії. Відповіді на запитання «Як часто протягом останніх 2 тижнів ви були настільки неспокійними, що було важко залишатися на одному місці?» також пока- зали більшу частоту порушень у групі першої хвилі рес- пондентів, порівняно з періодом другої хвилі. Таблиця 1 Демографічна інформація учасників (N = 351 ) N = 351 Сімейний стан Одружений Неодружений Розлучений 126 (35,9%) 199 (56,7%) 26 (7,4%) Професійна зайнятість Студент Надання послуг Підприємець Медичний персонал Безробітний Інший 150 (42,7%) 61 (17,4%) 31 (8,8%) 46 (13,1%) 16 (4,6%) 47 (13,4%) Соціальна мережа Facebook Instagram 139 (39,7%) 212 (60 . 3%) Зменшення контролю над емоціями та схильність до роздратування частіше зустрічалось під час першої хвилі пандемії. На питання: «Як часто протягом останніх 2 тижнів ви відчуваєте, що вам легко злитися і драту- ватись?» частіше зустрічалися стверджуючі відповіді серед осіб під час першої хвилі пандемії, порівняно з другою хвилею. Почуття страху, яке виявлялося питанням: «За остан- ні 2 тижні чи часто ви відчували страх, що може статися щось страшне?» також було вищим під час першої хви- лі пандемії (0,95 ± 0,05 балів) і зменшувалася під час другої хвилі (0,54 ± 0,05 балів). На фоні страху з`явля- лися явища апатії, песимізму, що впливало на знижен- ня мотивації до роботи. Так, позитивні ствердження на питання «Як часто ви виявляли за останній місяць, що не можете впоратися з усіма речами, які вам доводи- лось робити?» частіше виявлялися під час першої хвилі пандемії (2,04 ± 0,09 балів) порівняно з другою хвилею (1,80 ± 0,09 балів) (таблиця 2). Кореляційний аналіз результатів показав, що вибір соціальної мережі залежив від віку респондента (кое- фі цієнт кореляції - 0,58). Молодші за віком респон- денти віддавали перевагу Instagram і в цілому воліли шукати інформацію в соціальних мережах (коефіцієнт кореляції 0,24). Виявлення перших випадків захворю- вання у місті проживання респондента збільшило час перебування у соціальній мережі (коефіцієнт кореляції 0,43). Збільшення кількості часу, який витрачається на соціальні мережі, відповідно збільшувало час пошуку інформації про коронавірусну інфекцію (коефіцієнт ко- реляції 0,28). 2021. Випуск/Issue 17 Метою дослідження було також виявлення змін в харчовій поведінці та в структурі сну учасників за ос- танні два тижні (таблиця 4). Суттєва різниця між показниками рівня стресу була серед респондентів з низьким та помірним рівнями стресу. Помірний рівень стресу виявлявся переважно серед респондентів під час першої хвилі пандемії – 87,9% мали данні показники (таблиця 6). Кількість часу, протягом доби, витраченого на пере- гляд інформації в соціальних мережах, значно зменши- лась протягом другої хвилі пандемії, що може свідчити про підвищення толерантності до новин стосовно пан- демії. Під час першої хвилі, тривалість перегляду новин складала 3,18 ± 0,37 години, а під час другої хвилі – 2,35 ± 0,16 години ( р <0,05). Результати дослідження. Серед 351 учасників двох періодів пандемії, 126 (35,9%) були одруженими, 199 (56,7%) – неодруженими та 26 (7,4%) були розлученими. 139 опитуваних (39,7%) віддавали перевагу соціальній мережі Facebook, 212 (60,3%) віддавали перевагу Instagram. 86 респондентів (43,2%) під час першого опитуван- ня відзначили зростання часу використання соціальних медіа після початку пандемії. 275 учасників досліджен- ня (78,6%) віддавали перевагу соціальним мережам як джерелам новин, 87 досліджених (24,9%) відзначили, що вони більше, ніж у попередньому місяці, перегляда- ли Facebook та Instagram, для того, щоб знаходити нови- ни та інформацію про COVID-19. У наш час, у період пандемії, важливо оцінити за- кономірності зв’язку між особливостями використан- ня соціальних мереж та стресом. Наше дослідження є частиною більш масштабного міжнародного дослід- ження, яке намагалося з’ясувати зв’язок між викори- станням соціальних мереж, стресом та тривогою під час пандемії COVID-19. Проведене дослідження включає ПСИХІАТРІЯ, НЕВРОЛОГІЯ ТА МЕДИЧНА ПСИХОЛОГІЯ PSYCHIATRY, NEUROLOGY AND MEDICAL PSYCHOLOGY ISSN 2312-5675 (Print) 16 Обговорення. Протягом перших місяців пандемії інформаційні джерела прогнозували другу хвилю коронавірусної ін- фекції [13], що було підтверджено часом – так, значне збільшення кількості пацієнтів в Україні відбулося в осінні місяці 2020 року. За період самоізоляції в усьому світі зросло використання соціальних медіа як джерела інформації [14]. У дослідженні ми спробували з’ясувати тенденцію використання соціальних мереж та її зв’я- зок зі стресом та тривогою під час двох хвиль пандемії. Дослідження демонструє значну кількість часу, який люди проводять у соціальних мережах щодня, і ця ко- лективна відповідь подібна до попередньої пандемії вірусу H1N1 [15]. У нашому дослідженні ми бачимо, що Зміна часу протягом доби, для перегляду інформа- ції, пов’язаної з COVID-19 в соціальних мережах була цілком очікуваною через повторний період карантину. Під час першої хвилі пандемії середній час становив 60,83 ± 6,20 хв., то під час другої хвилі він становив 27,42 ± 3,04 хв. (р <0,05) (таблиця 2). Аналізуючи дані відповідей на тести, ми виявили, що деякі відповіді мали суттєві відмінності в різні періоди пандемії. Контроль своїх переживань у опитуваних осіб зни- жувався під час другої хвилі пандемії. Так, питання «Як 2021. Випуск/Issue 17 ISSN 2312-5675 (Print) ПСИХІАТРІЯ, НАРКОЛОГІЯ / PSYCHIATRY, NARCOLOGY / ПСИХИАТРИЯ, НАРКОЛОГИЯ 17 17 мережах [16]. Серед інформації, що розповсюджують соціальні мережі, зустрічалась недостовірна (фейкова) інформація, тобто та, що вводить в оману читача [17]. Новини, які містять недостовірну інформацію, потенцій- но можуть спричинити стрес у користувачів соціальних мереж та спонукати їх до панічного придбання товарів в середньому учасники проводили 3,18 ± 0,37 години щодня навесні 2020 року та 2,35 ± 0,16 години восени 2020 року у Facebook, Instagram у пошуках контенту, пов’язаного з COVID-19. Очевидно, що коли люди не мають достатньої інформації про COVID-19, вони по- кладаються на зміст, який вони знайшли в соціальних Таблиця 2 Таблиця 2 Таблиця 2 Різниця між респондентами, які проходили опитування навесні та восени 2020 року Питання (у питаннях, де враховується частота переживань, респонденти відповідали згідно шкали (0 –відсутність переживань, 4 максимальні переживання) Весна 2020 Осінь 2020 р * Вік респондента 31. 04 ± 0 . 80 27 . 75 ± 0 . 96 <0,05 Скільки часу ви витрачали щодня на соціальні медіа-платформи, такі як Facebook та Instagram? 3 . 18 ± 0 . 37 2 . 35 ± 0 . 16 <0,05 Скільки хвилин ви витрачали щодня на перегляд Facebook, Instagram, зокрема вмісту, пов’язаного з COVID-19? (хв) 60 . 83 ± 6 . 20 27 . 42 ± 3 . Обговорення. 04 <0,05 За останні 2 тижні ви часто нервували, хвилювались чи тривожились? 0 . 99 ± 0 . 07 1 . 01 ± 0 . 07 <0,05 Як часто протягом останніх 2 тижнів ви відчували, що не можете швидко заспокоїтись та / або контролювати своє занепокоєння? 0 . 54 ± 0 . 06 0 . 69 ± 0 . 07 <0,05 Як часто ви розслаблялися / відпочивали за останні 2 тижні? 1 . 29 ± 0 . 08 1 . 30 ± 0 . 07 0,46 Як часто за останні 2 тижні ви відчували сильне хвилювання? 0 . 69 ± 0 . 06 0 . 83 ± 0 . 07 0,07 Як часто за останні 2 тижні ви були настільки неспокійними, що було важко залишатися на одному місці? 0 . 91 ± 0 . 05 0 . 45 ± 0 . 06 <0,05 Як часто за останні 2 тижні ви відчуваєте, що вам легко злитися і дратуватись? 1 . 41 ± 0 . 07 1 . 07 ± 0 . 07 <0,05 За останні 2 тижні чи часто ви відчували страх, що може статися щось страшне? 0 . 95 ± 0 . 05 0 . 54 ± 0 . 05 <0,05 Як часто ви останній місяць засмучувались через щось, що сталося несподівано? 1 . 55 ± 0 . 07 1 . 52 ± 0 . 08 <0,05 Як часто за останній місяць ви відчували, що не можете контролювати важливі речі у своєму житті? 1 . 56 ± 0 . 08 1 . 43 ± 0 . 09 0,13 Як часто ви останній місяць нервували і переживали стрес? 1 . 72 ± 0 . 07 1 . 83 ± 0 . 09 0,17 Як часто протягом останнього місяця ви впевнені у своїй здатності вирішувати свої особисті проблеми? 2 . 40 ± 0 . 07 2 . 37 ± 0 . 09 0,40 За останній місяць, як часто ви відчували, що справи йдуть по-вашому? 2 . 07 ± 0 . 08 2 . 11 ± 0 . 08 0,35 Як часто за останній місяць ви виявляли, що не можете впоратися з усіма справами, які вам доводилось робити? 2 . 04 ± 0 . 09 1 . 80 ± 0 . 09 <0,05 За останній місяць, як часто ти в своєму житті могли контролювати роздратування? 2 . 33 ± 0 . 08 2 . 23 ± 0 . Обговорення. 09 0,18 За останній місяць, як часто ви відчували, що перебуваєте на вершині успіху? 1 . 95 ± 0 . 06 1 . 76 ± 0 . 08 <0,05 Як часто протягом останнього місяця ви тривожились через те, що сталося і було поза вашим контролем? 1 . 66 ± 0 . 07 1 . 57 ± 0 . 08 0,20 Як часто за останній місяць ви відчували, що труднощі накопичуються настільки високо, що ви не можете їх подолати? 1 . 33 ± 0 . 08 1 . 39 ± 0 . 09 0,29 Примітки: * - різниця між даними осені 2020 року та весни 2020 року.Точний критерій Фішера Таблиця 3 Розподіл респондентів, які спостерігали фейкові новини, пов’язані з COVID-19, у соціальних мережах Ви спостерігали за фальшиві новини Різниця між респондентами, які проходили опитування навесні та восени 2020 року Різниця між респондентами, які проходили опитування навесні та восени 2020 року Питання 8 %) 64 ( 42 . 1 %) <0,05 Помірний n (%) 24 ( 12 . 1 %) 15 ( 9 . 9 %) <0,05 Важкий n (%) 17 ( 8 . 5 %) 5 ( 3 . 3 %) <0,05 Загальна кількість N = 199 N = 152 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 6 Показники PSS-10 (N = 351) Період пандемії PSS Низький n (%) Помірний n (%) Високий n (%) Перша хвиля 10 (5,0%) 175 (87,9%) 14 (7,0%) Друга хвиля 29 (19,1%) 114 (75,0%) 9 (5,9%) р * <0,05 <0,05 0,26618 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. людей відчували страждання, спричинені страхом і тривогою. 20,6% респондентів першої хвилі та 11,1% респондентів другої хвилі страждали від помірного та сильного рівня тривоги. Згідно з нашим дослідженням, час, проведений у соціальній мережі для пошуку інфор- мації, пов’язаної з COVID-19 (в тому числі недостовірної), збільшував показник тривоги. Крім того, рівень стресу учасників значною мірою був пов’язаний з тим, скільки часу було проведено в соціальних медіа за останній мі- сяць, щоб отримати новини та інформацію про COVID-19. Дослідження дозволило простежити позитивну тенден- цію щодо зменшення тривожності протягом пандемії. першої необхідності, зберігання продуктів харчування тощо, що спостерігалося під час першої хвилі пандемії в усьому світі. Найбільша кількість фальшивих новин у соціальних медіа спостерігалась протягом першої хвилі, і 58,8% респондентів з першої хвилі пандемії спостері- гали дане явище. Причиною збільшення фейкових но- вин була недостатність інформації про сам вірус, який спричинив пандемію, а також відсутність цензури у со- ціальних мережах. Використання соціальних медіа як джерела інфор- мації зросло під час пандемії, що дало користувачам можливість отримувати та розповсюджувати інформа- цію щодо профілактики, лікування, клінічної картини захворювання, але розповсюджувалась і неправдива інформація, яка негативно впливала на психологічне благополуччя [17]. Негативні аспекти використання соціальних мереж можуть впливати на рівень тривоги та стресу серед населення. Під час пандемії більшість Питання Таблиця 5 Показники GAD-7 (N = 351) Перша хвиля Друга хвиля р * Мінімальний n (%) 43 ( 21 . 6 %) 68 ( 44 . 7 %) <0,05 Помірний n (%) 115 ( 57 . 8 %) 64 ( 42 . 1 %) <0,05 Помірний n (%) 24 ( 12 . 1 %) 15 ( 9 . 9 %) <0,05 Важкий n (%) 17 ( 8 . 5 %) 5 ( 3 . 3 %) <0,05 Загальна кількість N = 199 N = 152 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 6 Показники PSS-10 (N = 351) Період пандемії PSS Низький n (%) Помірний n (%) Високий n (%) Перша хвиля 10 (5,0%) 175 (87,9%) 14 (7,0%) Друга хвиля 29 (19,1%) 114 (75,0%) 9 (5,9%) р * <0,05 <0,05 0,26618 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 4 Зміна режиму сну та харчової поведінки за останні два тижні За останні два тижні (N = 351) Перша хвиля Друга хвиля р * Зміна у режимі сну Сон знижений 30 (15,1%) 37 (24,5%) <0,05 Без змін 106 (53,3%) 99 (65,6%) <0,05 Сон підвищений 63 (31,7%) 16 (10,6%) <0,05 Зміна харчової поведінки Втрата апетиту 19 (9,5%) 22 (14,6%) 0,08 Ніяких суттєвих змін 134 (67,3%) 108 (71,5%) <0,05 Апетит підвищений 46 (23,1%) 21 (13,9%) <0,05 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 4 Зміна режиму сну та харчової поведінки за останні два тижні За останні два тижні (N = 351) Перша хвиля Друга хвиля р * Зміна у режимі сну Сон знижений 30 (15,1%) 37 (24,5%) <0,05 Без змін 106 (53,3%) 99 (65,6%) <0,05 Сон підвищений 63 (31,7%) 16 (10,6%) <0,05 Зміна харчової поведінки Втрата апетиту 19 (9,5%) 22 (14,6%) 0,08 Ніяких суттєвих змін 134 (67,3%) 108 (71,5%) <0,05 Апетит підвищений 46 (23,1%) 21 (13,9%) <0,05 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Зміна режиму сну та харчової поведінки за останні два тижні і (N 351) П Д Зміна режиму сну та харчової поведінки за останні два тижн Таблиця 5 Показники GAD-7 (N = 351) Перша хвиля Друга хвиля р * Мінімальний n (%) 43 ( 21 . 6 %) 68 ( 44 . 7 %) <0,05 Помірний n (%) 115 ( 57 . Питання Таблиця 3 Таблиця 3 Розподіл респондентів, які спостерігали фейкові новини, пов’язані з COVID-19, у соціальних мережах Період спостереження Ви спостерігали за фальшиві новини Так Немає Перша хвиля 118 (58,8%) 81 (41,2%) Друга хвиля 61 (39,6%) 91 (60,4%) Загальна кількість обстежених n = 179 n = 172 р * <0,05 <0,05 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 3 Розподіл респондентів, які спостерігали фейкові новини, пов’язані з COVID-19, у соціальних мережах Період спостереження Ви спостерігали за фальшиві новини Так Немає Перша хвиля 118 (58,8%) 81 (41,2%) Друга хвиля 61 (39,6%) 91 (60,4%) Загальна кількість обстежених n = 179 n = 172 р * <0,05 <0,05 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. ПСИХІАТРІЯ, НЕВРОЛОГІЯ ТА МЕДИЧНА ПСИХОЛОГІЯ PSYCHIATRY, NEUROLOGY AND MEDICAL PSYCHOLOGY 2021. Випуск/Issue 17 Таблиця 5 Показники GAD-7 (N = 351) Перша хвиля Друга хвиля р * Мінімальний n (%) 43 ( 21 . 6 %) 68 ( 44 . 7 %) <0,05 Помірний n (%) 115 ( 57 . 8 %) 64 ( 42 . 1 %) <0,05 Помірний n (%) 24 ( 12 . 1 %) 15 ( 9 . 9 %) <0,05 Важкий n (%) 17 ( 8 . 5 %) 5 ( 3 . 3 %) <0,05 Загальна кількість N = 199 N = 152 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 6 Показники PSS-10 (N = 351) Період пандемії PSS Низький n (%) Помірний n (%) Високий n (%) Перша хвиля 10 (5,0%) 175 (87,9%) 14 (7,0%) Друга хвиля 29 (19,1%) 114 (75,0%) 9 (5,9%) р * <0,05 <0,05 0,26618 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Таблиця 4 Зміна режиму сну та харчової поведінки за останні два тижні За останні два тижні (N = 351) Перша хвиля Друга хвиля р * Зміна у режимі сну Сон знижений 30 (15,1%) 37 (24,5%) <0,05 Без змін 106 (53,3%) 99 (65,6%) <0,05 Сон підвищений 63 (31,7%) 16 (10,6%) <0,05 Зміна харчової поведінки Втрата апетиту 19 (9,5%) 22 (14,6%) 0,08 Ніяких суттєвих змін 134 (67,3%) 108 (71,5%) <0,05 Апетит підвищений 46 (23,1%) 21 (13,9%) <0,05 Примітки: * - різниця між даними осені 2020 року та весни 2020 року. Точний критерій Фішера. Висновок. Серед загальної кількості респондентів, 78,6% волі- ли стежити за новинами із соціальних медіа, а не з традиційних ЗМІ. Більшість учасників опитування пер- шої хвилі, у порівнянні з респондентами другої хвилі пандемії, спостерігали фейкові новини (дезінформа- ПСИХІАТРІЯ, НАРКОЛОГІЯ / PSYCHIATRY, NARCOLOGY / ПСИХИАТРИЯ, НАРКОЛОГИЯ 2021. Випуск/Issue 17 ISSN 2312-5675 (Print) 19 19 стресу переважав серед респондентів під час першої хвилі пандемії. цію), пов’язані з COVID-19. Вираженість змін харчової поведінки, розладів нічного сну спостерігалось серед респондентів під час першої хвилі пандемії, також рес- понденти цієї групи у більшості випадків страждали на важкі та помірні симптоми тривоги, а помірний рівень Наше дослідження підтверджує необхідність по- дальшого вивчення впливу використання соціальних мереж на психічне здоров`я населення нашої країни. ЛИТЕРАТУРА Coronavirus: the spread of misinformation // BMC Medicine. – 2020. – P. 18-89. 17. Mian A., Khan S. (2020). Coronavirus: the spread of misinformation // BMC Medicine. – 2020. – P. 18-89. Medicine. – 2020. – P. 18-89. https://doi.org/10.1186/s12916-020-01556-3 https://doi.org/10.1111/acps.12953 https://doi.org/10.1186/s12916-020-01556-3 1. Policy Brief:COVID-19 and the Need for Action on Mental Health. United Nations. - 2020. – P. 17. REFERENCES 1. Policy Brief: COVID-19 and the Need for Action on Mental Health. United Nations. 2020, p. 17. 1. Policy Brief: COVID-19 and the Need for Action on Mental Health. United Nations. 2020, p. 17. 7. Linn B.S., Zeppa R. Stress in junior medical students: Relationship to personality and performance. Journal of Medical Education. 1984, pp. 7-12. 7. Linn B.S., Zeppa R. Stress in junior medical students: Relationship to personality and performance. Journal of Medical Education. 1984, pp. 7-12. https://doi.org/10.1097/00001888-198401000-00002 https://doi.org/10.1097/00001888-198401000-00002 2. Kim Y. C., Rhee M. The contingent eff ect of social networks on organizational com- mitment: A comparison of instrumental and expressive ties in a multinational high-tech- nology company. Sociological Perspectives. 2010. Vol. 53. Issue. 4, pp. 479-502. 2. Kim Y. C., Rhee M. The contingent eff ect of social networks on organizational com- mitment: A comparison of instrumental and expressive ties in a multinational high-tech- nology company. Sociological Perspectives. 2010. Vol. 53. Issue. 4, pp. 479-502. 8. Berry N., Emsley R., Lobban F., Bucci S. Social media and its relationship with mood, self-esteem and paranoia in psychosis. Acta Psychiatrica Scandinavica. 2018. Vol. 138, pp. 558-570. https://doi.org/10.1525/sop.2010.53.4.479 https://doi.org/10.1111/acps.12953 3. Gao J., Zheng P., Jia Y., Chen H., Mao Y., Chen S., Wang Y., Fu H., Dai J. Mental health problems and social media exposure during COVID-19 outbreak. PLoS ONE. 2020. Vol. 15(4), p. 10. 9. Cohen S., Kamarck T., Mermelstein R. Perceived Stress Scale. APA PsycTests. 1983, p.23 https://doi.org/10.1371/journal.pone.0231924 https://doi.org/10.1037/t02889-000 10. Spitzer R.L., Kroenke K., Williams J.B., Lowe B. A brief measure for assessing generalized anxiety disorder: The GAD-7. Archives of Internal Medicine. 2006. Vol. 166, pp. 1092-1097. https://doi.org/10.1001/archinte.166.10.1092 11. Lapach S.N., Chubenko A.V., Babich P.N. Statistical methods in biomedical research using Excel. Kiev: “Morion”. 2000, p. 320. 10. Spitzer R.L., Kroenke K., Williams J.B., Lowe B. A brief measure for assessing generalized anxiety disorder: The GAD-7. Archives of Internal Medicine. 2006. Vol. 166, pp. 1092-1097. 10. Spitzer R.L., Kroenke K., Williams J.B., Lowe B. A brief measure for assessing generalized anxiety disorder: The GAD-7. Archives of Internal Medicine. 2006. Vol. 166, pp. 1092-1097. 4. Wang C., Pan R., Wan X., Tan Y., Xu L., Ho C. S., Ho R. C. Immediate psychological responses and associated factors during the initial stage of the 2019 coronavirus disease (COVID-19) epidemic among the general population in China. Int. J. Environ. Res Public Health 2020 Vol 17(5) P 1729 https://doi.org/10.1001/archinte.166.10.1092 https://doi.org/10.3390/ijerph17051729 11. 9. Cohen S., Kamarck T., Mermelstein R. Perceived Stress Scale // APA PsycTests. – 1983. – P.23 ЛИТЕРАТУРА H. Policy response, social media and science journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons // Sustainability (Switzerland). – 2020. – Vol. 12(7). – P. 2931. https://doi.org/10.3390/su12072931 17. Mian A., Khan S. (2020). Coronavirus: the spread of misinformation // BMC COVID-19: Patients’ Perspective // Telemedicine and e-Health. - 2020. – P. 847-849. https://doi.org/10.1089/tmj.2020.0099 6. Fabris M.A., Marengo D., Longobardi C., Settanni M. Investigating the links between fear of missing out, social media addiction, and emotional symptoms in adolescence: The role of stress associated with neglect and negative reactions on social media // Addictive Behaviors. – 2020. – Vol. 106. – P. 106364 6. Fabris M.A., Marengo D., Longobardi C., Settanni M. Investigating the links between fear of missing out, social media addiction, and emotional symptoms in adolescence: The role of stress associated with neglect and negative reactions on social media // Addictive Behaviors. – 2020. – Vol. 106. – P. 106364 15. Chew C., Eysenbach G. (2010). Pandemics in the age of Twitter: Content analysis of tweets during the 2009 H1N1 outbreak // PLoS ONE. – 2010. –Vol. 5(11). – P. 14118. https://doi.org/10.1371/journal.pone.0014118 16 LaV P PhamT H HoM T NguyenM H NguyenK L VuongT T NguyenH K https://doi.org/10.1016/j.addbeh.2020.106364 16. La V. P., Pham T. H., Ho M. T., Nguyen M. H., Nguyen K. L., Vuong T. T., Nguyen H. K., Tran T., Khuc Q., Ho M. T., Vuong Q. H. Policy response, social media and science journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons // Sustainability (Switzerland). – 2020. – Vol. 12(7). – P. 2931. https://doi.org/10.3390/su12072931 7. Linn B.S., Zeppa R. Stress in junior medical students: Relationship to personality and performance // Journal of Medical Education. – 1984. – P. 7-12. Tran T., Khuc Q., Ho M. T., Vuong Q. H. Policy response, social media and science journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam 7. Linn B.S., Zeppa R. Stress in junior medical students: Relationship to personality and performance // Journal of Medical Education. – 1984. – P. 7-12. https://doi.org/10.1097/00001888-198401000-00002 https://doi.org/10.3390/su12072931 8. Berry N., Emsley R., Lobban F., Bucci S. Social media and its relationship with mood, self-esteem and paranoia in psychosis // Acta Psychiatrica Scandinavica. – 2018. – Vol. 138. – P. 558-570. 17. Mian A., Khan S. (2020). ЛИТЕРАТУРА 9. Cohen S., Kamarck T., Mermelstein R. Perceived Stress Scale // APA PsycTests. – 1983. – P.23 https://doi.org/10.1037/t02889-000 2. Kim Y. C., Rhee M. The contingent eff ect of social networks on organizational commitment: A comparison of instrumental and expressive ties in a multinational high- technology company // Sociological Perspectives. – 2010. – Vol. 53. - Issue. 4. – P. 479-502. 10. Spitzer R.L., Kroenke K., Williams J.B., Lowe B. A brief measure for assessing generalized anxiety disorder: The GAD-7 // Archives of Internal Medicine. – 2006. – Vol. 166. – P. 1092-1097. https://doi.org/10.1525/sop.2010.53.4.479 https://doi.org/10.1525/sop.2010.53.4.479 https://doi.org/10.1001/archinte.166.10.1092 3. Gao J., Zheng P., Jia Y., Chen H., Mao Y., Chen S., Wang Y., Fu H., Dai J. Mental health problems and social media exposure during COVID-19 outbreak. // PLoS ONE. – 2020. – Vol. 15(4). – P. 10. 11. Lapach S.N., Chubenko A.V., Babich P.N. Statistical methods in biomedical research using Excel. Kiev: “Morion”. – 2000. - P. 320. https://doi.org/10.1371/journal.pone.0231924 12. Вельтищев Д.Ю., Марченко А.С., Генерализованное тревожное расстрой- ство: эпидемиология, патогенез, диагностика и фармакотерапия (обзор литера- туры) // Психические расстройства в общей медицине. – 2011. – №1. – C. 56-64. https://doi.org/10.1371/journal.pone.0231924 4. Wang C., Pan R., Wan X., Tan Y., Xu L., Ho C. S., Ho R. C. Immediate psychological responses and associated factors during the initial stage of the 2019 coronavirus disease (COVID-19) epidemic among the general population in China // Int. J. Environ. 13. Shunqing Xu, Yuanyuan Li. Beware of a second wave of COVID-19 // The Lancet. – 2020. – Vol. 395. – P. 1321-1322. Res. Public Health. – 2020. – Vol. 17(5). – P. 172 https://doi.org/10.3390/ijerph17051729 https://doi.org/10.1016/S0140-6736(20)30845-X https://doi.org/10.3390/ijerph17051729 14. Pappot N., Taarnhøj G.A., Pappot H. Telemedicine and e-Health Solutions for COVID P ’P //T l d d H l h P 5. Garrett O. A Case of Modern Mass Hysteria? The Coronavirus. https://exepose. com/2020/02/13/a-case-of-modern-mass-hysteria-the-coronavirus/ 5. Garrett O. A Case of Modern Mass Hysteria? The Coronavirus. https://exepose. com/2020/02/13/a-case-of-modern-mass-hysteria-the-coronavirus/ pp , øj , pp COVID-19: Patients’ Perspective // Telemedicine and e-Health. - 2020. – P. 847-849. https://doi.org/10.1089/tmj.2020.0099 15. Chew C., Eysenbach G. (2010). Pandemics in the age of Twitter: Content analysis of tweets during the 2009 H1N1 outbreak // PLoS ONE. – 2010. –Vol. 5(11). – P. 14118. https://doi.org/10.1371/journal.pone.0014118 16. La V. P., Pham T. H., Ho M. T., Nguyen M. H., Nguyen K. L., Vuong T. T., Nguyen H. K., Tran T., Khuc Q., Ho M. T., Vuong Q. 2. Kim Y. C., Rhee M. The contingent eff ect of social networks on organizational commitment: A comparison of instrumental and expressive ties in a multinational high- technology company // Sociological Perspectives. – 2010. – Vol. 53. - Issue. 4. – P. 479-502. 2021. Випуск/Issue 17 journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons. Sustainability (Switzerland). 2020. Vol. 12(7), P. 2931. https://doi.org/10.3390/su12072931 17. Mian A., Khan S. (2020). Coronavirus: the spread of misinformation // BMC Medicine. 2020, pp. 18-89. https://doi.org/10.1186/s12916-020-01556-3 journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons. Sustainability (Switzerland). 2020. Vol. 12(7), P. 2931. https://doi.org/10.3390/su12072931 17. Mian A., Khan S. (2020). Coronavirus: the spread of misinformation // BMC Medicine. 2020, pp. 18-89. https://doi.org/10.1186/s12916-020-01556-3 journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons. Sustainability (Switzerland). 2020. Vol. 12(7), P. 2931. https://doi.org/10.3390/su12072931 17. Mian A., Khan S. (2020). Coronavirus: the spread of misinformation // BMC Medicine. 2020, pp. 18-89. https://doi.org/10.1186/s12916-020-01556-3 journalism for the sustainability of the public health system amid the COVID-19 outbreak: The vietnam lessons. Sustainability (Switzerland). 2020. Vol. 12(7), P. 2931. 14. Pappot N., Taarnhøj G.A., Pappot H. Telemedicine and e-Health Solutions for COVID-19: Patients’ Perspective. Telemedicine and e-Health. – 2020, pp. 847-849. 14. Pappot N., Taarnhøj G.A., Pappot H. Telemedicine and e-Health Solutions for COVID-19: Patients’ Perspective. Telemedicine and e-Health. – 2020, pp. 847-849. https://doi.org/10.1089/tmj.2020.0099 15. Chew C., Eysenbach G. (2010). Pandemics in the age of Twitter: Content analysis of tweets during the 2009 H1N1 outbreak. PLoS ONE. 2010. Vol. 5(11), pp. 14118. https://doi.org/10.1371/journal.pone.0014118 16. La V. P., Pham T. H., Ho M. T., Nguyen M. H., Nguyen K. L., Vuong T. T., Nguyen H. K., Tran T., Khuc Q., Ho M. T., Vuong Q. H. Policy response, social media and science of tweets during the 2009 H1N1 outbreak. PLoS ONE. 2010. Vol. 5(11), pp. 14118. https://doi.org/10.1371/journal.pone.0014118 16. La V. P., Pham T. H., Ho M. T., Nguyen M. H., Nguyen K. L., Vuong T. T., Nguyen H. K., Tran T., Khuc Q., Ho M. T., Vuong Q. H. Policy response, social media and science ПСИХІАТРІЯ, НЕВРОЛОГІЯ ТА МЕДИЧНА ПСИХОЛОГІЯ PSYCHIATRY, NEUROLOGY AND MEDICAL PSYCHOLOGY 20 СВЯЗЬ ПСИХИЧЕСКОГО ЗДОРОВЬЯ ВО ВРЕМЯ ПАНДЕМИИ COVID-19 И ИСПОЛЬЗОВАНИЯ СОЦИАЛЬНЫХ СЕТЕЙ СВЯЗЬ ПСИХИЧЕСКОГО ЗДОРОВЬЯ ВО ВРЕМЯ ПАНДЕМИИ COVID-19 И ИСПОЛЬЗОВАНИЯ СОЦИАЛЬНЫХ СЕТЕЙ Харьковский национальный университет имени В. Н. Каразина; площадь Свободы, 6, 61022, г. Харьков, Украина gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 Харьковский национальный университет имени В. Н. Каразина; площадь Свободы, 6, 61022, г. Харьков, Украина gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 Гайдабрус Андрей Владимирович REFERENCES Lapach S.N., Chubenko A.V., Babich P.N. Statistical methods in biomedical research using Excel. Kiev: “Morion”. 2000, p. 320. 5. Garrett O. A Case of Modern Mass Hysteria? The Coronavirus. https://exepose. com/2020/02/13/a-case-of-modern-mass-hysteria-the-coronavirus/ 12. Veltischev D.Yu., Marchenko A.S., Generalized anxiety disorder: epidemiology, pathogenesis, diagnosis and pharmacotherapy (literature review). Mental disorders in general medicine. 2011. No 1, pp. 56-64. 6. Fabris M.A., Marengo D., Longobardi C., Settanni M. Investigating the links between fear of missing out, social media addiction, and emotional symptoms in ad- olescence: The role of stress associated with neglect and negative reactions on social media Addictive Behaviors 2020 Vol 106 pp 106364 13. Shunqing Xu, Yuanyuan Li. Beware of a second wave of COVID-19. The Lancet. 2020. Vol. 395, pp. 1321-1322. media. Addictive Behaviors. 2020. Vol. 106, pp. 106364 https://doi.org/10.1016/j.addbeh.2020.106364 ISSN 2312-5675 (Print) 14. Pappot N., Taarnhøj G.A., Pappot H. Telemedicine and e-Health Solutions for COVID-19: Patients’ Perspective. Telemedicine and e-Health. – 2020, pp. 847-849. https://doi.org/10.1089/tmj.2020.0099 15. Chew C., Eysenbach G. (2010). Pandemics in the age of Twitter: Content analysis of tweets during the 2009 H1N1 outbreak. PLoS ONE. 2010. Vol. 5(11), pp. 14118. https://doi.org/10.1371/journal.pone.0014118 16. La V. P., Pham T. H., Ho M. T., Nguyen M. H., Nguyen K. L., Vuong T. T., Nguyen H. K., Tran T., Khuc Q., Ho M. T., Vuong Q. H. Policy response, social media and science Гайдабрус Андрей Владимирович В 2020 году мир столкнулся с распространением коронавирусной инфекции. Распространение инфекции вызвало кризи COVID-19, а это кризис как физического, так и ментального здоровья. Надлежащее психическое здоровье имеет решающее зна- чение для функционирования общества во все времена в каждой стране и должно быть в приоритете и в центре реагирования и восстановления после пандемии COVID-19. Психическое здоровье и благополучие – благосостояние всего общества, были су- щественно нарушены во время пандемии, и нуждатся в приоритетном изучении. Целью нашего исследования, во время начала карантинных мероприятий, было выяснить взаимосвязь между использованием социальных сетей и стрессом вместе с тревогой во время этой пандемии COVID-19. Во время карантина - использование социальных сетей стало одним из источников распро- странения информации. Мы искали тенденции использования социальных медиа, связь между распространением социальных сетей с изменениями в поведении, психопатологическими симптомами, такими, как симптомы стресса, тревоги, расстройства аппетита и ночного сна. Наше исследование было проведено с помощью интернет-опроса лиц, во время первой и второй волн пандемии. Исследовательская работа была направлена на понимание взаимосвязи между социальными сетями и стрессом во время панде- мии Covid-19 и увидеть динамику изменений. Всего опрошено 199 участников первого тестового периода и 152 участника второго тестового периода. Мы применили анкеты, оценивали симптомы тревоги и стресса, а именно шкалу воспринятого стресса PSS-10 и тест на тревожное расстройство GAD-7. Большинство участников опроса считали, что использование ими социальных медиа возросло во время пандемии, это привело к увеличению просмотра и распространения недостоверной информации (фейки), которая влияет на психологическое благополучие. Негативные аспекты использования социальных сетей могут влиять на уровень тревожности и стресса населения нашей страны. Распространение фальшивой информации в контексте увеличения времени поиска имеет все предпосылки для увеличения риска ухудшения психического здоровья в нашей стране во время пандемии. Ключевые слова: COVID-19, социальные сети, тревога, стресс, пандемия. Ключевые слова: COVID-19, социальные сети, тревога, стресс, пандемия. ПСИХІАТРІЯ, НАРКОЛОГІЯ / PSYCHIATRY, NARCOLOGY / ПСИХИАТРИЯ, НАРКОЛОГИЯ 2021. Випуск/Issue 17 ISSN 2312-5675 (Print) 21 Key words: COVID-19, social networks, anxiety, stress, pandemic. THE LINK BETWEEN MENTAL HEALTH DURING THE COVID-19 PANDEMIC AND THE USE OF SOCIAL MEDIA Аndriy V. Haydabrus V. N. Karazin Kharkiv National University; Svobody Square, 6, 61022, Kharkiv, Ukraine gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 V. N. Karazin Kharkiv National University; Svobody Square, 6, 61022, Kharkiv, Ukraine gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 V. N. Karazin Kharkiv National University; Svobody Square, 6, 61022, Kharkiv, Ukraine gaydabrusandriy@gmail.com ORCID ID: 0000-0002-6911-3252 The world was faced the extensive spread of severe acute respiratory syndrome-coronavirus. The COVID-19 crisis is a crisis of both physical and mental health. Proper mental health is crucial to the functioning of society at all times in every country and should be a priority and at the center of response and recovery after the COVID-19 pandemic. Mental health and well-being - the well-being of society as a whole - have been severely compromised during the pandemic and are a priority for urgent consideration. In the qarantine period, the social media were important sourses of information. The aim of this study was to fi nd out the relation between social media use and stress together with anxiety during this pandemic of COVID-19. We are looking for trends of social media use and infl uence that on behavioral and mental disorders. This study was conducted with the help of an online based survey of individuals from a fi rst wave and during a second wave of pandemic in Ukraine. It was conducted to understand the relationship between social media and stress during the Covid-19 pandemic and to see dynamics of change. A total of 199 participants of the fi rst test period and 152 participants of a second test period responded to the survey which was conducted by snowballing sampling techniques in the convenient atmosphere. We applied two validated, self-reporting questionnaires namely Perceived Stress Scale and test of Generalized Anxiety Disorder-7. When period of use of social media had increased during the pandemic, it led to an increase in the perception and dissemination of false information (fakes) that negative aff ected psychological well-being. Negative aspects of the use of social networks can aff ect the level of anxiety and stress of the population of our country. Among the respondents, 120 (34.2%) think that their mental health and wellbeing was being deteriorated during this period of pandemic. Total percentage 51.0% of the participants were suff ering from mild anxiety, 11.1% from moderate anxiety and 6.3% from severe anxiety The dissemination of false information in the context of increased search time has all the prerequisites for increasing the risk of deteriorating mental health in our country during a pandemic. Key words: COVID-19, social networks, anxiety, stress, pandemic.
https://openalex.org/W4223617310
https://www.nature.com/articles/s41598-022-09729-1.pdf
English
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Association between 24-h movement guidelines and cardiometabolic health in Chilean adults
Scientific reports
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Ricardo Riquelme1, Leandro F. M. Rezende2, Adilson Marques3,4, Clemens Drenowatz5 & Gerson Ferrari  6,7* Ricardo Riquelme1, Leandro F. M. Rezende2, Adilson Marques3,4, Clemens Drenowatz5 & Gerson Ferrari 6,7* This study aimed to examine the association between meeting 24-h movement guidelines and cardiometabolic health in Chilean adults. We used cross-sectional data of 2618 adults from the Chilean National Health Survey 2016–2017. Meeting the 24-h movement guidelines was defined as ≥ 600 MET-min/week of physical activity; ≤ 8 h/day of sitting time; and 7 to 9 h/day of sleep duration. Cardiometabolic health indicators were body mass index, waist circumference, high triglycerides, high blood pressure, type 2 diabetes, metabolic syndrome, and risk of cardiovascular disease in a 10-year period. Meeting none out of three 24-h movement guidelines (vs all three) was associated with higher odds of overweight/obesity (OR 1.67; 95%CI 1.45 to 1.89), high waist circumference (1.65; 1.40 to 1.90), hypertension (2.88; 2.23 to 3.53), type 2 diabetes (1.60; 1.26 to 1.94), metabolic syndrome (1.97; 1.54 to 2.40) and risk of cardiovascular disease (1.50; 1.20, 1.80). Meeting one guideline (vs three) was associated with higher odds of five of out seven cardiometabolic indicators. Our study found that the composition of movement behaviors within a 24-h period may have important implications for cardiometabolic health. From a movement perspective, the 24-h period is distributed among physical activity of various intensities (light, moderate and vigorous), sedentary behaviors and sleep duration. Engaging in sufficient levels of physi- cal activity, limiting sitting time, and adequate sleep duration throughout the day have been associated with several health benefits across the ­lifespan1–4. Traditionally, studies have focused on investigating independent associations of physical activity, sitting time, and sleep duration with different health outcomes, or with only partial adjustment for time spent in other movement ­behaviors5. However, because recent studies revealed that these movement behaviors may interact with each ­other5, there is growing interest in an integrated approach to movement behavior studies. Previous studies have showed the independent and joint association of physical activity, sitting time, and sleep duration with poor cardiometabolic health indicators (i.e., adiposity level, HDL- cholesterol, and triglycerides)6–8.hi g y The world’s first 24-h movement guidelines that integrate physical activity, sitting time, and sleep duration was published by ­Canada7,9, and soon after by Finland, New Zealand, Australia, and in some other ­countries10–13. As part of such efforts, the World Health Organization (WHO)14 and the National Sleep ­Foundation15 offer recommendations for physical activity and sleep duration for different age groups. www.nature.com/scientificreports www.nature.com/scientificreports Association between 24‑h movement guidelines and cardiometabolic health in Chilean adults OPEN Ricardo Riquelme1, Leandro F. M. Rezende2, Adilson Marques3,4, Clemens Drenowatz5 & Gerson Ferrari  6,7* Ricardo Riquelme1, Leandro F. M. Rezende2, Adilson Marques3,4, Clemens Drenowatz5 & Gerson Ferrari  6,7* Although no specific bench- mark is available for sitting time, it is generally recommended to minimize time spent in sedentary behaviors, mainly sitting ­time16,17. To date, no evidence is available to understand the levels of movement behaviors in Latin American countries inhabitants based on internationally recognized benchmarks such as global physical activ- ity guidelines or international sleep duration ­recommendations14,15. The guidelines represent a new approach to health promotion by including several general recommendations over a that include time spent in physical activity, sitting time, and sleep ­duration7. 1Facultad Medicina, Escuela de Nutrición y Dietética, Universidad de los Andes, Santiago, Chile. 2Department of Preventive Medicine, Escola Paulista de Medicina, Universidade Federal de São Paulo, Sao Paulo, Brazil. 3CIPER, Faculdade de Motricidade Humana, Universidade de Lisboa, Lisbon, Portugal. 4ISAMB, Universidade de Lisboa, Lisbon, Portugal. 5Division of Sport, Physical Activity and Health, University of Education Upper Austria, Linz, Austria. 6Universidad de Santiago de Chile (USACH), Escuela de Ciencias de la Actividad Física, el Deporte y la Salud, Santiago, Chile. 7Laboratorio de Rendimiento Humano, Grupo de Estudio en Educación, Actividad Física y Salud (GEEAFyS), Universidad Católica del Maule, Talca, Chile. *email: gerson.demoraes@usach.cl 1Facultad Medicina, Escuela de Nutrición y Dietética, Universidad de los Andes, Santiago, Chile. 2Department of Preventive Medicine, Escola Paulista de Medicina, Universidade Federal de São Paulo, Sao Paulo, Brazil. 3CIPER, Faculdade de Motricidade Humana, Universidade de Lisboa, Lisbon, Portugal. 4ISAMB, Universidade de Lisboa, Lisbon, Portugal. 5Division of Sport, Physical Activity and Health, University of Education Upper Austria, Linz, Austria. 6Universidad de Santiago de Chile (USACH), Escuela de Ciencias de la Actividad Física, el Deporte y la Salud, Santiago, Chile. 7Laboratorio de Rendimiento Humano, Grupo de Estudio en Educación, Actividad Física y Salud (GEEAFyS), Universidad Católica del Maule, Talca, Chile. *email: gerson.demoraes@usach.cl | https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 www.nature.com/scientificreports/ Figure 1. Flow chart of the process to obtain the final sample. Figure 1. Flow chart of the process to obtain the final sample. Figure 1. Flow chart of the process to obtain the final sample. Chile, a high-income Latin American country, has experienced a rapid epidemiological and nutritional ­transition18. Of note, the prevalence of overweight and metabolic syndrome (defined as a cluster of risk fac- tors that include abdominal obesity, hypertension, hyperglycemia, and dyslipidemia) reached 78% and 13%, ­respectively19,20. Furthermore, the prevalence of type 2 diabetes mellitus increased from 4.2% in 2003 to 12.3% in ­201619. Ricardo Riquelme1, Leandro F. M. Rezende2, Adilson Marques3,4, Clemens Drenowatz5 & Gerson Ferrari  6,7* These transitions might be partially explained by insufficient levels of physical activity, high sitting time, and inadequate sleep duration throughout the day. However, to our knowledge, no studies in Chile and Latin American region have examined the association of meeting 24-h movement guidelines with cardiometabolic health indicators.i In this study, we estimated the prevalence of meeting the general and specific combinations of 24-h move- ment guidelines by sociodemographic characteristics in Chilean adults. We also examined the associations of meeting general and specific-combinations of 24-h movement guidelines with cardiometabolic health indicators. Study design and sample. Participants with circulating triglycerides ≥ 150 mg/dL; HDL-C < 40 mg/dL for men, or < 50 mg/dL for women, or under drug treatment for cholesterol control were considered as high ­triglycerides19. been described ­previously . Participants with circulating triglycerides ≥ 150 mg/dL; HDL C < 40 mg/dL for men, or < 50 mg/dL for women, or under drug treatment for cholesterol control were considered as high ­triglycerides19. Blood pressure was measured with an Omron HEM-7200 Monitor and participants being ­seated19,29. Hyper- tension was defined by a measured systolic blood pressure ≥ 140 mmHg or diastolic blood pressure ≥ 90 mmHg or self- reported antihypertensive ­treatment19. g g g g y Blood pressure was measured with an Omron HEM-7200 Monitor and participants being ­seated19,29. Hyper- tension was defined by a measured systolic blood pressure ≥ 140 mmHg or diastolic blood pressure ≥ 90 mmHg or self- reported antihypertensive ­treatment19. p yp Type 2 diabetes was determined by the presence of any of the following three criteria: (a) self-reported medical diagnosis of type 2 diabetes, (b) being under medical prescription for type 2 diabetes, (c) having fasting baseline glycaemic values > 126 mg/dL19.i g y g Metabolic syndrome was defined according to the Chilean National Guidelines as having at least three of the following five components: high waist circumference (> 90 cm for men and > 80 cm for women), low HDL, hypertension (HDL-C 130/85 mmHG or under BP-lowering treatment) and impaired fasting glucose (IFG, glucose > 5.6 mmol/L or under treatment with antidiabetic drugs)19.h g g The risk of cardiovascular disease was evaluated by the Framingham Risk ­Score30, which was adapted for a Chilean ­population19,31,32. The Framingham Risk Score estimates the possibility of suffering a cardiovascular event or stroke in a 10-year period for people without a history of a previous cardiovascular ­event31. Participants were classified as low (< 5%) and middle/high (≥ 5%) risk of cardiovascular disease in a 10-year ­period19,31,32. Sociodemographic correlates. Sociodemographic characteristics included sex (women/men), age (adults [18–64 years], and older adults [≥ 65 years])7, education level (up to primary [< 8 years of studies], sec- ondary [between 8 and 12 years of studies] and beyond secondary [> 12 years of study]), monthly household income (stratified into tertiles: lowest [< US $310.00], medium [US $310.00–705.00], and highest [> US 705.00]), health insurance (private [Isapres], public [Fonasa] or other/none), and indigenous ethnicity (yes/no)19. Study design and sample. Study design and sample. We obtained data from the National Health Survey of Chile (NHS) 2016– 201719. The NHS 2016–2017 was a cross-sectional, household survey that enrolled 6233 participants aged 15 years and older, who habitually reside in private homes located in urban and rural areas of the fifteen regions of ­Chile19. A complex, multistage sampling strategy was performed, considering counties as the primary sam- pling unit, households as the secondary sampling unit, and one participant from selected households as the tertiary sampling unit. Sampling weights from the survey accounted for differences in selection probability and non-response ­rates19. The post-stratification adjustment allowed to expand the sample to the estimated popula- tion in Chile. Data collection was carried out between August 2016 and March 2017. One participant per house- hold was randomly selected using a Kish computational algorithm, and the response rate was 67%. Details on NHS 2016–2017 are available ­elsewhere19. We excluded from our study adolescents aged 15–17 years (n = 238) and participants with missing or incom- plete data of physical activity, sitting, sleep duration, or cardiometabolic health (n = 3377). Thus, our final analiti- cal sample included 2618 adults (Fig. 1). Assessing the 24‑h movement guidelines. The Global Physical Activity Questionnaire (GPAQ) was used to assess physical activity and sitting ­time21,22. Developed by the WHO to measure population-level physi- cal activity behaviors, the GPAQ uses standardized protocols and have shown to be a valid and reliable instru- ment to incorporate cultural and other ­differences21,22. Participants provided information on the duration, fre- quency, and intensity of physical activities performed in three domains (occupational, active commuting, and recreational). For each domain, metabolic-equivalent tasks (MET; where 1 MET =  ~ 3.5 ml ­O2 ­kg−1 ­Min−1) were assigned according to the GPAQ protocol (4-METs was used for moderate and transport-related activities and 8-METs for vigorous activities). Total self-reported physical activity was calculated as the sum of MET-min/ week−1 across all three domains. Participants were subsequently categorized as physically inactive (< 600 MET- min/week−1) or active (≥ 600 MET-min/week−1)23. Prevalences were based on 600 MET-min/week, which is approximately 150 min/week of moderate to vigorous physical ­activity24. https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 | www.nature.com/scientificreports/ A single question from the GPAQ was used to measure sitting ­time25,26. Study design and sample. The question was (i) “How much time do you usually spend sitting or reclining at work, at home, getting to and from places, or with friends including time spent sitting at a desk, sitting with friends, travelling in car, bus, or train, reading, playing cards or watch- ing television, but do not include time spent sleeping on a typical day?” The participant responded in hours and minutes per day. This question has shown fair validity as was similarly reported in other countries (r = 0.23 to 0.26)25,26. We adopted the cutpoint of spend ≤ 8 h/day as guideline for sitting ­time7,9. p p p y g g Self-reported sleep duration was assessed using two items, which asked participants to report their time spent sleeping on a typical ­day19. The sleep questionnaire consisted of two questions examining the sleep dura- tion (hours/day): “How much time did you usually sleep on weekdays and weekends?” These questions were asked separately for weekdays and weekend days. The average sleep duration per day was calculated as follows = [(weekday time*5) + (weekend day time*2)]/719. Sleep duration values were dichotomized into meeting (≥ 7 and ≤ 9 h/day) or not meeting (< 7 or > 9 h/day) the sleep duration ­guidelines7,9. Cardiometabolic health indicators. All measurements of cardiometabolic health were taken by previ- ously trained professionals, using standard ­protocols19. The collected variables were body height and weight, waist circumference, triglycerides, blood pressure, and indicators for type 2 diabetes. In addition, based on the abovementioned cardiometabolic indicators, metabolic syndrome status and risk of cardiovascular disease were ­determined19. Height was measured with a portable stadiometer with accuracy to the nearest 0.1 cm)19. Weight was meas- ured with a digital scale (Tanita HD713) with an accuracy of 0.1 ­kg19. Weight measurements were taken barefoot, and the participants wearing light clothing. Body mass index (kg/m2) was calculated (weight [kg]/height ­[m2]) and participants were categorized as underweight/eutrophic (≤ 24.9 kg/m2) or overweight/obesity (≥ 25.0 kg/ m2)19,27. ) Waist circumference (cm) was measured midpoint between the lower coastal ridge and the upper margin of the superior iliac crest, using a flexible plastic ­tape19. Central obesity was defined as > 88 cm for women and > 102 cm for ­men19,28.t Venous blood samples were obtained after at least 8 h of fasting according standardized methods that have been described ­previously19. Results In addition, 12.6% (95% CI 9.9, 15.3) of participants met physical activity and sitting time, 9.5% (95% CI 8.9, 10.1) met sleep duration and sitting time, while 12.0% (95% CI 8.1, 15.9) of participants met physical activity and sleep duration guidelines (Table 2).i p g Figures 2 and 3 show the proportion of participants meeting the general and specific combinations according sociodemographic characteristics. A total of 16.6% of men and 20.9% of women met all three recommendations, whereas 4.2% and 3.9% met none of the three recommendations, respectively. Older adults, women, those with up to primary education level, indigenous ethnicitiy and living in rural areas were more likely to meet all three 24-h movement guidelines. g Not meeting any 24-h movement guidelines was associated with higher odds of body mass index (OR 1.67; 95% CI 1.45 to 1.89), waist circumference (OR 1.65; 95% CI 1.40 to 1.90), hypertension (OR 2.88; 95% CI 2.23 to 3.53), type 2 diabetes (OR 1.60; 95% CI 1.26 to 1.94), metabolic syndrome (OR 1.97; 95% CI 1.54 to 2.40) and risk of cardiovascular disease (OR 1.50; 95% CI 1.20 to 1.80) compared to participants meeting all three 24-h movement guidelines. Compared to participants meeting all three 24-h movement guidelines, those meeting only one out of three guidelines had higher odds of triglycerides (OR 1.75; 95% CI 1.40 to 2.10), hypertension (OR 1.44; 95% CI 1.11 to 1.77), type 2 diabetes (OR 2.61; 95% CI 2.10 to 3.12), metabolic syndrome (OR 1.54; 95% CI 1.11 to 1.97), and risk of cardiovascular disease (OR 1.12; 95% CI 1.05 to 1.19). These associations were not statistically significant when compared participants meeting two vs all three guidelines (Table 3).i y gi p p p g g In the specific combinations of movement behaviors, meeting both physical activity and sleep duration was associated with higher odds of triglycerides (OR 1.15; 95% CI 1.06 to 1.24), hypertension (OR 1.75; 95% CI 1.40 to 2.10), type 2 diabetes (OR 1.50; 95% CI 1.23 to 1.77), and metabolic syndrome (OR 1.70; 95% CI 1.26 to 2.14) compared to met all three meeting 24-h movement guidelines. Furthermore, sleep duration and sitting time was associated with higher odds of five (waist circumference, triglycerides, hypertension, type 2 diabetes, and metabolic syndrome) of out seven cardiometabolic indicators compared to meeting all three recommendations. Results Participants sociodemograhic characteristics, lifestyle risk factors and cardiometabolic health indicators by 24-h movement guideline groups are presented in Table 1. The total number of participants included in the study was 2618 (1661; 63.4% women) with a mean age of 49.4 years (SD: 18.9). Overall, 25.1% were older adults (≥ 65 years), 54.8% had 8 to 12 years of education, 49.7% were in the lowest of household income group, 88.2% had access to health insurance, 88.3% were not of indigenous heritage, 82.7% lived in urban areas, 50.9% ate ≤ 4 days/week of fruit and vegetables, 73.2% were never/former tobacco smokers and 73.9% consumed alcohol. Most participants (76.4%) were classified as living with overweight/obesity. Almost half (46.1%) had high waist circumference, 33.7% had high triglycerides, 36.6% had hypertension, 15.5% had type 2 diabetes, 45.1% had metabolic syndrome, and 30.9% had a high risk of cardiovascular disease (Table 1). We did not observed differences (p > 0.05) between the participants who had complete data and those who were excluded from the analytical sample in terms of sex, age group and educational level (data not shown). g g p Participants meeting all three 24-guideline recommendations were more likely older, women, had lower household income and higher acces to public health insurance, indigenous, and living in rural area compared to those meeting none of the guidelines. Participants meeting all three 24-guideline were also more likely never smokers and had higher consumption of fruits and vegetable and alcohol compared to those meeting none of the guidelines (Table 1).hi g The prevalences of meeting general and specific combinations of the 24 h movement guidelines are presented in Table 2. Overall, 18.1% (95% CI 15.5, 20.7) of the sample met all three recommendations, 44.7% (95% CI 41.5, 47.9) met two, 33.1% (95% CI 29.8, 36.4) one, and 4.1% (95% CI 2.5, 5.7) met none of the three recom- mendations. We also found the following prevalences of meeting the specific guidelines: 22.0% (95% CI 18.1, 25.9) for physical activity, 15.2% (95% CI 11.7, 18.7) for sitting time, 6.5% (95% CI 4.1, 8.9) for sleep duration. Study design and sample. In Chile, there are two main ethnicities; the first relates to Indigenous, and the second relates to those with other ­roots33. We also considered urban–rural geographic areas based on the Chilean population ­census19. Lifestyle risk factors included low consumption of fruits and vegetables (≤ 4 days per week)20, tobacco smoking (never/ former or smoker)20, any alcohol consumption (using the short version of Alcohol Use Disorder Identifcation Test (AUDIT-C)34, adapted and validated for Chile ­residents35. Statistical analysis. Descriptive data were presented as means, standard deviation (SD), frequency, and proportions according to sociodemographic correlates and cardiometabolic health. Each participant was catego- rized as either “meeting” or “not meeting” the 24-h movement guidelines as follows: (1) engage in ≥ 600 MET- min/week of physical activity; (2) spend ≤ 8 h/day in sitting time; and (3) obtain between 7 and 9 h/day of sleep ­duration7,9. The number of 24-h movement guidelines (0–3) met was created. For instance, the participants who met all three recommendations for physical activity, sitting time and sleep duration were categorized as meet- ing the integrated all three movement guidelines. In the specific-combination of 24-h movement guidelines, the proportion of participants meeting the physical activity, sitting time, and sleep duration and combinations of the guidelines (“none”, “only physical activity guideline met”, “only sitting time guideline met”, “only sleep duration guideline met”, “both the physical activity and sitting time guidelines met”, “both the physical activity and sleep duration guidelines met”, “both the sitting time and sleep duration guidelines met”, and “all three guidelines met”) were also calculated. https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 | www.nature.com/scientificreports/ Multivariable logistic regression models were performed to estimate odds ratios (OR) and 95% confidence interval for the association between 24-h movement guidelines and cardiometabolic health indicators (depend- ent variable). Models were adjusted for the following potential confounders: region, sex, age, education level, monthly household income, health insurance, ethnicity, geographic area, fruits and vegetables consumption, tobacco consumption, and alcohol consumption. All analyses considered the NHS 2016–2017 complext sampling ­design19,20. Weights took into account the complex sampling design and the four levels of multistage sampling. All statistical analyses were conducted using SPSS V28 software (SPSS Inc., IBM Corp., Armonk, New York, NY, USA). A significance level of p < 0.05 was adopted. Ethics approval and consent to participate. Study design and sample. The NHS was funded by the Chilean Ministry of Health and approved by the Research Ethics Committee of the Faculty of Medicine of the Pontificia Universidad Católica de Chile (project number 16-019). Informed consent was obtained from all subjects and/or their legal guardian(s). All aspects of the study were in accordance with the Declaration of Helsinki and were performed in accordance with relevant guidelines and regulations. Results Meeting a combination of physical activity and sitting time vs meeting all three guidelines was not associated with a higher odds of all cardiometabolic health indicators (Table 3). Meeting only the physical activity or only sitting time guidelines were associated with higher odds of six (except triglycecerides for physical activity, and waist circumference for sitting time) out of seven cardiometabolic indicators compared to meeting all three 24-h movement guidelines. Meeting only sleep duration guidelines vs meeting all three guidelines was not associated with a higher odds of all cardiometabolic health indicators (Table 3). Scientific Reports | (2022) 12:5805 | https://doi.org/10.1038/s41598-022-09729-1 www.nature.com/scientificreports/ www.nature.com/scientificreports/ Total (n = 2618) Met none guidelines (%) Met one of the three guidelines (%) Met two of the three guidelines (%) Met all three guidelines (%) Sociodemografic correlates (%) Categorical age  Adults (18–64 years) 1961 (74.9) 74.9 80.5 77.3 69.0  Older adults (≥ 65 years) 657 (25.1) 25.1 19.5 22.7 31.0 Sex  Men 957 (36.6) 53.3 44.8 39.1 29.0  Women 1661 (63.4) 46.7 55.2 60.9 71.0 Education level  Up to primary (< 8 years) 649 (24.8) 26.7 20.7 25.1 26.3  Secondary (8–12 years) 1435 (54.8) 53.3 58.2 54.6 53.5  Beyond secondary (> 12 years) 534 (20.4) 20.0 21.1 20.3 20.2 Monthly household income  Lowest 1302 (49.7) 46.7 48.6 49.4 50.8  Medium 939 (35.9) 46.6 37.6 36.0 34.7  Highest 377 (14.4) 6.7 13.8 14.6 14.5 Health insurance  Private 212 (8.1) 13.3 8.9 7.6 8.3  Public 2308 (88.2) 80.0 87.6 88.2 88.4  Other/none 98 (3.7) 6.7 3.5 4.2 3.3 Indigenous ethnicity  Yes 306 (11.7) 0.0 9.9 11.4 13.2  No 2312 (88.3) 100.0 90.1 88.6 86.8 Geographic area  Urban 2164 (82.7) 86.7 85.2 82.7 81.4  Rural 454 (17.3) 13.3 14.8 17.3 18.6 Fruits and vegetables consumption  ≤ 4 days/week 1333 (50.9) 53.3 49.5 52.0 50.0  > 4 days/week 1285 (49.1) 46.7 50.5 48.0 50.0 Tobacco consumption  Current 701 (26.8) 40.0 37.1 29.9 23.4  Never/former 1917 (73.2) 60.0 62.9 70.1 76.6 Alcohol consumption  Yes 1934 (73.9) 54.5 74.0 74.9 72.7  No 684 (26.1) 45.5 26.0 25.1 27.3 Cardiometabolic health Body mass index (%)  Underweight/eutrophic 619 (33.6) 20.0 25.1 24.7 21.6  Overweight/obesity 1999 (76.4) 80.0 74.9 75.3 78.4 Waist circumference  Below threshold 1411 (53.9) 33.3 56.1 56.3 49.9  Above threshold 1207 (46.1) 66.7 43.9 43.7 50.1 Triglycerides  Normal 1735 (66.3) 73.3 66.4 65.4 67.2  High 883 (33.7) 26.7 33.6 34.6 32.8 Hypertension  No 1659 (63.4) 73.3 66.7 64.5 60.1  Yes 959 (36.6) 26.7 33.3 35.5 39.9 Type 2 diabetes  No 2212 (84.5) 86.7 88.5 84.3 83.1  Yes 406 (15.5) 13.3 11.5 15.7 16.9 Metabolic syndrome  No 1437 (54.9) 73.3 58.2 55.1 52.7  Yes 1181 (45.1) 26.7 41.8 44.9 47.3 Risk of CVD  Low 1178 (45.0) 80.0 72.8 69.8 66.1  Middle/high 1440 (55.0) 20.0 27.2 30.2 33.9 https://doi.org/10.1038/s41598-022-09729-1 www.nature.com/scientificreports/ Table 1. Participants socidemographic characteristics, lifestyle risk factors, and cardiometabolic health indicators according to 24-h movement guidelines. CVD Cardiovascular disease. Table 1. Participants socidemographic characteristics, lifestyle risk factors, and cardiometabolic health indicators according to 24-h movement guidelines. CVD Cardiovascular disease. Table 2. Discussion U i Using a representative sample of adults from Chile, our study examined the associations between different combi- nations of meeting 24-h movement guidelines and cardiometabolic health in Chilean adults. We found that 18% of participants met all three 24-h movement guidelines. Participants meeting none out of three 24-h movement guidelines had higher odds of overweight/obesity, above threshold waist circumference, hypertension, type 2 diabetes, metabolic syndrome and risk of cardiovascular disease compared to meeting all three guidelines. The results also showed that meeting only one of the three 24-h movement guidelines was associated with higher odds of having several cardiometabolic risk factors compared to meeting all three guidelines.hi g p g g This study is the first to examine the prevalence of 24-h movement guidelines in Chilean adults. Our study may also contribute to the scientific evidence regarding the association of movement behavior with health out- comes. In line with the findings of our analyses, two recent systematic reviews with compositional data analysis studies suggested that the composition of movement behaviors across the 24-h day (including physical activity, sitting time, and sleep duration) was associated with cardiometabolic health indicators (i.e., body mass index, waist circumference, triglycerides, hypertension)6,36.i g y yp To properly analyze movement behaviours constrained to, but filling, the 24-h period compositional analy- ses are ­recommended9,17. As none of the 24-h movement behaviors are independent of each other, and each of these behaviors has reciprocal effects on the ­others37, it has been recommended that it is unsuitable for studying their associations with important health implications separetely. Compositional data analysis methods allow for general 24-h time use among dissimilar movement behaviors to be assessed. Compositional approaches address multicollinearity issues between movement variables, ensure that estimates are fully adjusted for all-time habit, and allow for the inspection of mutual and synergistic associations of the 24-h movement behaviors with health ­indicators38. Our findings support the importance the association between the daily composition of movement behaviors and cardiometabolic health.h This study found that meeting none and one out of three recommendations was associated with a increased odds of cardiometabolic risk compared to meeting all three guidelines. Even specific combinations of meeting 2 out of 3 movement guidelines may not suffice to ensure optimal cardiometabolic health. Rao et al. www.nature.com/scientificreports/ Meeting guidelines was defined as ≥ 600 MET-min/week−1 of physical activity, ≤ 8 h/day of sitting time, and between 7 and 9 h/day of sleep duration. www.nature.com/scientificreports/ Proportion [% (95% CI)] of participants meeting the physical activity, sitting time and sleep duration and combinations of these guidelines. Meeting guidelines was defined as ≥ 600 MET-min/week−1 of physical activity, ≤ 8 h/day of sitting time, and between 7 and 9 h/day of sleep duration. Meeting guidelines Total (n = 2618) n % (95% CI) General combinations of movement behaviors, % All three (physical activity and sitting time and sleep duration) 473 18.1 (15.5 to 20.7) Two out of three 1171 44.7 (41.5 to 47.9) One out of three 867 33.1 (29.8 to 36.4) None 107 4.1 (2.5 to 5.7) Specific combinations of movement behaviors, % All three (physical activity and sitting time and sleep duration) 473 18.1 (15.5 to 20.7) Physical activity and sitting time 329 12.6 (9.9 to 15.3) Physical activity and sleep duration 315 12.0 (8.1, 15.9) Sleep duration and sitting time 249 9.5 (8.9 to 10.1) Only physical activity 577 22.0 (18.1 to 25.9) Only sitting time 397 15.2 (11.7 to 18.7) Only sleep duration 171 6.5 (4.1 to 8.9) None 107 4.1 (2.5 to 5.7) Meeting guidelines Total (n = 2618) n % (95% CI) General combinations of movement behaviors, % All three (physical activity and sitting time and sleep duration) 473 18.1 (15.5 to 20.7) Two out of three 1171 44.7 (41.5 to 47.9) One out of three 867 33.1 (29.8 to 36.4) None 107 4.1 (2.5 to 5.7) Specific combinations of movement behaviors, % All three (physical activity and sitting time and sleep duration) 473 18.1 (15.5 to 20.7) Physical activity and sitting time 329 12.6 (9.9 to 15.3) Physical activity and sleep duration 315 12.0 (8.1, 15.9) Sleep duration and sitting time 249 9.5 (8.9 to 10.1) Only physical activity 577 22.0 (18.1 to 25.9) Only sitting time 397 15.2 (11.7 to 18.7) Only sleep duration 171 6.5 (4.1 to 8.9) None 107 4.1 (2.5 to 5.7) Table 2. Proportion [% (95% CI)] of participants meeting the physical activity, sitting time and sleep duration and combinations of these guidelines. Meeting guidelines was defined as ≥ 600 MET-min/week−1 of physical activity, ≤ 8 h/day of sitting time, and between 7 and 9 h/day of sleep duration. Table 2. Proportion [% (95% CI)] of participants meeting the physical activity, sitting time and sleep duration and combinations of these guidelines. www.nature.com/scientificreports/ www.nature.com/scientificreports/ Figure 2. Proportion (%) of participants meeting the general combinations according sociodemographic characteristics. Figure 2. Proportion (%) of participants meeting the general combinations according sociodemographic characteristics. Figure 2. Proportion (%) of participants meeting the general combinations according sociodemographic characteristics. In a recent study that examined the temporal and bidirectional relationship between objectively-measured sleep duration, sitting time, and physical activity, results indicated that higher levels of physical activity were related with adequade sleep duration, whereas increased sitting time was concomitant with poor sleep ­duration41, and these interactions may influence cardiometabolic health indicators. The complex temporal and reciprocal relationships between the 24-h movement behaviors remains poorly understood. Clarifying these interactions, and their relationship with other outcomes is essential for notifying targeted intervention approaches to increase the amount of people meeting all movement guidelines in order to reduce the burden of non-communicable diseases. The quantity of studies using compositional analyses and/or assessing compliance with the 24-h move- ment guidelines to analyse interactions with well-being is rapidly increasing. These findings are essential for understanding 24-h movement behaviors in Latin American adults and establishing evidence-based interventions for preventing cardiometabolic diseases.h p g The evidence presented in our study suggests that 18.1% of Chilean adults met the integrated 24-h movement behavior recommendations (i.e., a combination of physical activity, sitting time, and sleep duration recommen- dations). A recent systematic review also highlights the lack of data on compliance of movement guidelines in aduts and older ­adults6. Future studies are necessary to gain a more thorough understanding of the proportion of individuals who simultaneously achieve all of the movement behavior recommendations and the associations with cardiometabolic health indicators.h This study has several limitations. One limitation of the study is the cross-sectional design which cannot reveal the temporal relationship between 24-h movement behaviors and cardiometabolic health indicators. Further, the NHS and other publicly available national health surveillance data rely on self-reported measures, which are subject to measurement error. The limited sample size of “none" group means that caution must be exercised when interpreting our findings on guidelines met none. In addition, 3615 participants, were excluded from the analyses due to incomplete data, which may have led to selection bias. However, participants excluded due to missing data were similar (p > 0.05) to those included in our study in terms of sex, age group and educational level. Discussion U i also found a dose–response relationship between the number of movement guidelines met and physical, mental, and social health outcomes, such as physical activity, screen time, prosocial behaviours, and life ­satisfaction39. Similar results were also reported in children with a dose–response relationship between meeting movement guidelines and reduced risk of ­obesity40. Our study, however, showed that the combination of sufficient physical activity and lower sitting time may provide beneficial effects on maintaining cardiometabolic health. Meeting sleep duration and sitting time, on the other hand, was associated with higher odds of five (waist circumference, triglycerides, hypertension, type 2 diabetes, and metabolic syndrome) out of seven cardiometabolic indicators compared to meeting all three recommendations. Only meeting sleep duration guidelines, however, was not associated with cardiometablic health indicators compared to meeting all three guidelines. Scientific Reports | (2022) 12:5805 | https://doi.org/10.1038/s41598-022-09729-1 www.nature.com/scientificreports/ Figure 3. Proportion (%) of participants meeting the specific combinations according sociodemographic characteristics. Figure 3. Proportion (%) of participants meeting the specific combinations according sociodemographic characteristics. without considering muscle-strengthening activities and other light activites. We also used sitting time to estim total sitting time. This measure may not capture time spent lying down, for ­example42.h h There are several strengths of the present study, however, that should be considered. Associations were adjusted for several potential confounders, such as sex, age, education level, monthly household income, health insurance, ethnicity, geographic area and other lifestyle risk factors. We used objective measurements for body mass index, waist circumference, triglycerides, blood samples, and blood pressure. A large sample size also ensured adequate statistical power. Furthermore, currently, there has been limited data on 24-h movement behavior in Latin America; countries need to develop these to allow greater measurement, surveillance and promotion of movement behaviors among adults in this region.i Our findings, illustrate important considerations that must be made about the content of new guidelines released in Chile. Longitudinal and intervention studies are needed to examine a wide range of cardiometabolic health that are potentially associated with the 24-h movement guidelines. Future studies should also apply device- based measures of physical activity (e.g., accelerometers) or combine them with subjective ones (e.g., diaries and questionnaires) to assess movement behaviors in more detail. www.nature.com/scientificreports/ The physical activity guidelines were only calculated based on moderate-to-vigorous physical activity Scientific Reports | (2022) 12:5805 | https://doi.org/10.1038/s41598-022-09729-1 www.nature.com/scientificreports/ Conclusions In summary, around one out of five adults met the 24-h movement behavior guidelines in Chile. Meeting none or one out of three 24-h movement behavior guidelines was associated with higher odds of having poor car- diometabolic indicators in Chilean adults. National public health efforts are needed to promote more physical activity, less sitting time, and adequate sleep duration among Chilean residents to increase the proportion of individuals meeting at least 2, and preferably all three, existing 24-h movement recommendations. Future efforts should, therefore, consider novel strategies to simultaneously improve physical activity, sitting time and sleep duration in adults. https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 | www.nature.com/scientificreports/ Table 3. Multivariable logistic regression models for the associations of meeting physical activity, sitting time, sleep duration, and combinations of these recommendations with cardiometabolic health in Chilean adults. BMI body mass index, WC waist circumference, CVD cardiovascular disease, OR odds ratio, 95% CI confidence interval 95%, PA physical activity, ST sitting time. Multinomial logistic regression model with cardiometabolic health as dependent variable adjusted for region, sex, age, education level, monthly household income, health insurance, ethnicity, geographic area, fruits and vegetables consumption, tobacco consumption, and alcohol consumption. a 0 = underweight/eutrophic; 1 = overweight/obesity. b 0 = below threshold; 1 = above threshold. c 0 = no; 1 = yes. d 0 = low; 1 = middle/high. *p < 0.05. Conclusions d 0 = low; 1 = middle/high. *p < 0.05. Data availability Th d d Data availability The datasets generated and/or analysed during the current study are available in the database repository of the Epidemiology Department of the Chilean Ministry of Health: http://​epi.​minsal.​cl/​bases-​de-​datos/. The datasets generated and/or analysed during the current study are available in the database repository of the Epidemiology Department of the Chilean Ministry of Health: http://​epi.​minsal.​cl/​bases-​de-​datos/. Received: 19 January 2022; Accepted: 28 March 2022 Received: 19 January 2022; Accepted: 28 March 2022 Conclusions Meeting guidelines BMI (overweight/ obesity) OR (95%CI)a WC (above threshold) OR (95%CI)b Triglycerides (yes) OR (95%CI)c Hypertension (yes) OR (95%CI)c Type 2 diabetes (yes) OR (95%CI)c Metabolic syndrome (yes) OR (95%CI)c Risk of CVD (middle/high) OR (95%CI)d Guidelines met all three 1.00 (Reference) 1.00 (Reference)  1.00 (Reference) 1.00 (Reference) 1.00 (Reference)  1.00 (Reference)  1.00 (Reference) Guidelines met two out of three 1.15 (0.90 to 1.40) 0.92 (0.72 to 1.12) 1.08 (0.88 to 1.28) 0.81 (0.56 to 1.06) 0.70 (0.33 to 1.07) 1.11 (0.85 to 1.37) 0.72 (0.58 to 0.90) Guidelines met one out of three 0.80 (0.37 to 1.23) 0.72 (0.35 to 1.09) 1.75 (1.40 to 2.10)* 1.44 (1.11 to 1.77)* 2.61 (2.10 to 3.12)* 1.54 (1.11 to 1.97)* 1.12 (1.05 to 1.19)* Guidelines met none out of three 1.67 (1.45 to 1.89)* 1.65 (1.40 to 1.90)* 1.21 (0.95 to 1.38) 2.88 (2.23 to 3.53)* 1.60 (1.26 to 1.94)* 1.97 (1.54 to 2.40)* 1.50 (1.20 to 1.80)* Guidelines met PA and ST 1.10 (0.90 to 1.30) 0.75 (0.15 to 1.35) 1.06 (0.90 to 1.22) 0.91 (0.67 to 1.15) 1.45 (0.91 to 2.36) 1.83 (0. Conclusions 79 to 2.87) 0.99 (0.83 to 1.19) Guidelines met PA and sleep duration 1.16 (0.96 to  1.36) 1.02 (0.81 to 1.23) 1.15 (1.06 to 1.24)* 1.75 (1.40 to 2.10)* 1.50 (1.23 to 1.77)* 1.70 (1.26 to 2.14)* 1.15 (0.90 to 1.40) Guidelines met sleep duration and ST 0.93 (0.27 to 1.59) 1.26 (1.05 to 1.47)* 2.46 (1.46 to 3.46)* 2.02 (1.60 to 2.44)* 2.16 (1.74 to 2.58)* 1.89 (1.44 to 2.34)* 1.67 (0.54 to 2.80) Guidelines met only PA 1.89 (1.50 to 2.28)* 1.70 (1.36 to 2.04)* 1.10 (0.83 to 1.37) 2.68 (2.15 to 3.21)* 1.47 (1.13 to 1.81)* 1.26 (1.04 to 1.48)* 1.50 (1.21 to 1.79)* Guidelines met only ST 1.27 (1.05 to 1.49)* 1.08 (0.83 to 1.33) 1.44 (1.12 to 1.76)* 1.90 (1.40 to 2.40)* 1.50 (1.03 to 1.97)* 2.16 (1.34 to 2.98)* 1.30 (1.06 to 1.54)* Guidelines met only sleep duration 1.08 (0.96 to 1.20) 0.90 (0.75 to 1.05) 1.02 (0.84 to  1.20) 1.23 (0.97 to 1.49) 1.78 (0.70 to 2.86) 1.12 (0.62 to 1.74) 1.03 (0.60 to 1.46) Meeting guidelines BMI (overweight/ obesity) OR (95%CI)a WC (above threshold) OR (95%CI)b Triglycerides (yes) OR (95%CI)c Hypertension (yes) OR (95%CI)c Type 2 diabetes (yes) OR (95%CI)c Metabolic syndrome (yes) OR (95%CI)c Risk of CVD (middle/high) OR (95%CI)d Guidelines met all three 1.00 (Reference) 1.00 (Reference)  1.00 (Reference) 1.00 (Reference) 1.00 (Reference)  1.00 (Reference)  1.00 (Reference) Guidelines met two out of three 1.15 (0.90 to 1.40) 0.92 (0.72 to 1.12) 1.08 (0.88 to 1.28) 0.81 (0.56 to 1.06) 0.70 (0.33 to 1.07) 1.11 (0.85 to 1.37) 0.72 (0.58 to 0.90) Guidelines met one out of three 0.80 (0.37 to 1.23) 0.72 (0.35 to 1.09) 1.75 (1.40 to 2.10)* 1.44 (1.11 to 1.77)* 2.61 (2.10 to 3.12)* 1.54 (1.11 to 1.97)* 1.12 (1.05 to 1.19)* Guidelines met none out of three 1.67 (1.45 to 1.89)* 1.65 (1.40 to 1.90)* 1.21 (0.95 to 1.38) 2.88 (2.23 to 3.53)* 1.60 (1.26 to 1.94)* 1.97 (1.54 to 2.40)* 1.50 (1.20 to 1.80)* Guidelines met PA and ST 1.10 (0.90 to 1.30) 0.75 (0.15 to 1.35) 1.06 (0.90 to 1.22) 0.91 (0.67 to 1.15) 1.45 (0.91 to 2.36) 1.83 (0. Conclusions 79 to 2.87) 0.99 (0.83 to 1.19) Guidelines met PA and sleep duration 1.16 (0.96 to  1.36) 1.02 (0.81 to 1.23) 1.15 (1.06 to 1.24)* 1.75 (1.40 to 2.10)* 1.50 (1.23 to 1.77)* 1.70 (1.26 to 2.14)* 1.15 (0.90 to 1.40) Guidelines met sleep duration and ST 0.93 (0.27 to 1.59) 1.26 (1.05 to 1.47)* 2.46 (1.46 to 3.46)* 2.02 (1.60 to 2.44)* 2.16 (1.74 to 2.58)* 1.89 (1.44 to 2.34)* 1.67 (0.54 to 2.80) Guidelines met only PA 1.89 (1.50 to 2.28)* 1.70 (1.36 to 2.04)* 1.10 (0.83 to 1.37) 2.68 (2.15 to 3.21)* 1.47 (1.13 to 1.81)* 1.26 (1.04 to 1.48)* 1.50 (1.21 to 1.79)* Guidelines met only ST 1.27 (1.05 to 1.49)* 1.08 (0.83 to 1.33) 1.44 (1.12 to 1.76)* 1.90 (1.40 to 2.40)* 1.50 (1.03 to 1.97)* 2.16 (1.34 to 2.98)* 1.30 (1.06 to 1.54)* Guidelines met only sleep duration 1.08 (0.96 to 1.20) 0.90 (0.75 to 1.05) 1.02 (0.84 to  1.20) 1.23 (0.97 to 1.49) 1.78 (0.70 to 2.86) 1.12 (0.62 to 1.74) 1.03 (0.60 to 1.46) Table 3. Multivariable logistic regression models for the associations of meeting physical activity, sitting time, sleep duration, and combinations of these recommendations with cardiometabolic health in Chilean adults. BMI body mass index, WC waist circumference, CVD cardiovascular disease, OR odds ratio, 95% CI confidence interval 95%, PA physical activity, ST sitting time. Multinomial logistic regression model with cardiometabolic health as dependent variable adjusted for region, sex, age, education level, monthly household income, health insurance, ethnicity, geographic area, fruits and vegetables consumption, tobacco consumption, and alcohol consumption. a 0 = underweight/eutrophic; 1 = overweight/obesity. b 0 = below threshold; 1 = above threshold. c 0 = no; 1 = yes. d 0 = low; 1 = middle/high. *p < 0.05. Table 3. Multivariable logistic regression models for the associations of meeting physical activity, sitting time, sleep duration, and combinations of these recommendations with cardiometabolic health in Chilean adults. BMI body mass index, WC waist circumference, CVD cardiovascular disease, OR odds ratio, 95% CI confidence interval 95%, PA physical activity, ST sitting time. Multinomial logistic regression model with cardiometabolic health as dependent variable adjusted for region, sex, age, education level, monthly household income, health insurance, ethnicity, geographic area, fruits and vegetables consumption, tobacco consumption, and alcohol consumption. a 0 = underweight/eutrophic; 1 = overweight/obesity. b 0 = below threshold; 1 = above threshold. c 0 = no; 1 = yes. References 1. Rezende, L. F. M., Lee, D. H., Ferrari, G. & Giovannucci, E. Confounding due to pre-existing diseases in epidemiologic studies on sedentary behavior and all-cause mortality: A meta-epidemiologic study. Ann. Epidemiol. 52, 7–14. https://​doi.​org/​10.​1016/j.​ annep​idem.​2020.​09.​009 (2020). p 2. Ortega, F. B., Lavie, C. J. & Blair, S. N. Obesity and cardiovascular disease. Circ. Res. 118, 1752–1770. https://​doi.​org/​10.​1161/ CIRCR​ESAHA.​115.​306883 (2016). 3. Lauby-Secretan, B. et al. Body fatness and cancer-viewpoint of the IARC working group. N. Engl. J. Med. 375, 794–798. https:// doi.​org/​10.​1056/​NEJMs​r1606​602 (2016). g 4. Williams, E. P., Mesidor, M., Winters, K., Dubbert, P. M. & Wyatt, S. B. Overweight and obesity: Prevalence, consequences, and causes of a growing public health problem. Curr. Obes. Rep. 4, 363–370. https://​doi.​org/​10.​1007/​s13679-​015-​0169-4 (2015).t 5. Oftedal, S. et al. Associations of health-behavior patterns, mental health and self-rated health. Prev Med. 118, 295–303. https://​ doi.​org/​10.​1016/j.​ypmed.​2018.​11.​017 (2019).h 6. Rollo, S., Antsygina, O. & Tremblay, M. S. The whole day matters: Understanding 24-hour movement guideline adherence and relationships with health indicators across the lifespan. J. Sport Health Sci. 9, 493–510. https://​doi.​org/​10.​1016/j.​jshs.​2020.​07.​004 (2020). ( ) 7. Ross, R. et al. Canadian 24-hour movement guidelines for adults aged 18–64 years and adults aged 65 years or older: An integration of physical activity, sedentary behaviour, and sleep. Appl. Physiol. Nutr. Metab. 45, S57–S102. https://​doi.​org/​10.​1139/​apnm-​2020-​ 0467 (2020). ( ) 8. Ferrari, G. et al. Prevalence and sociodemographic correlates of meeting the Canadian 24-hour movement guidelines among latin american adults: A multi-national cross-sectional study. BMC Public Health 22, 217. https://​doi.​org/​10.​1186/​s12889-​022-​12613-2 (2022). ( ) 9. Tremblay, M. S. et al. Canadian 24-hour movement guidelines for children and youth: An integration of physical activity, sedentary behaviour, and sleep. Appl. Physiol. Nutr. Metab. 41, S311-327. https://​doi.​org/​10.​1139/​apnm-​2016-​0151 (2016). , p pp y , p g p ( ) 0. New Zealand Ministry of Health. Sit Less, Move More, Sleep Well: Physical Activity Guidelines for Children and Young People (Min- istry of Health, 2017).h y 11. Okely, A. D. et al. A collaborative approach to adopting/adapting guidelines: The Australian 24-Hour Movement Guidelines for the early years (Birth to 5 years): An integration of physical activity, sedentary behavior, and sleep. BMC Public Health 17, 869. https://​doi.​org/​10.​1186/​s12889-​017-​4867-6 (2017).h p g ( ) 2. Khamput, T. et al. Thailand Recommendations on Physical Activity, Non-sedentary Lifestyles, and Sleeping 1st edn. (Division o Physical Activity and Health, Ministry of Public Health, 2017).h Physical Activity and Health, Ministry of Public Health, 2017). 13. www.nature.com/scientificreports/ www.nature.com/scientificreports/ 14. Bull, F. C. et al. World Health Organization 2020 guidelines on physical activity and sedentary behaviour. Br. J. Sports Med. 54, 1451–1462. https://​doi.​org/​10.​1136/​bjspo​rts-​2020-​102955 (2020). p g j p 5. Hirshkowitz, M. et al. National Sleep Foundation’s sleep time duration recommendations: Methodology and results summary Sleep Health 1, 40–43. https://​doi.​org/​10.​1016/j.​sleh.​2014.​12.​010 (2015). p p g j ( ) 6. Tremblay, M. S. et al. Sedentary behavior research network (SBRN): Terminology consensus project process and outcome. Int. J Behav. Nutr. Phys. Act 14, 75. https://​doi.​org/​10.​1186/​s12966-​017-​0525-8 (2017). y g 17. Tremblay, M. S., Carson, V. & Chaput, J. P. Introduction to the Canadian 24-hour movement guidelines for children and youth: An integration of physical activity, sedentary behaviour, and sleep. Appl. Physiol. Nutr. Metab. 41, iii–iv. https://​doi.​org/​10.​1139/​ apnm-​2016-​0203 (2016). p ( ) 8. Vio, F., Albala, C. & Kain, J. Nutrition transition in Chile revisited: Mid-term evaluation of obesity goals for the period 2000–2010 Public Health Nutr. 11, 405–412. https://​doi.​org/​10.​1017/​S1368​98000​70005​0X (2008). p 18. Vio, F., Albala, C. & Kain, J. Nutrition transition in Chile revisited: Mid-term evaluation of obesity Public Health Nutr. 11, 405–412. https://​doi.​org/​10.​1017/​S1368​98000​70005​0X (2008). p g 19. MINSAL. Encuesta Nacional de Salud 2016–2017-Ministerio de Salud (MINSAL, 2017). 20. Aburto, M. J. et al. Prevalence and co-occurrence of lifestyle risk factors for non-communicab graphic characteristics among adults Chilean residents. Sci. Rep. 11, 21702. https://​doi.​org/​10 0. Aburto, M. J. et al. Prevalence and co-occurrence of lifestyle risk factors for non-communicable diseases according to sociodemo- graphic characteristics among adults Chilean residents. Sci. Rep. 11, 21702. https://​doi.​org/​10.​1038/​s41598-​021-​01167-9 (2021). 1 H T E i N M h ll S & A d d E M V lidit f th l b l h i l ti it ti i (GPAQ) i d lt 20. Aburto, M. J. et al. Prevalence and co occurrence of lifestyle risk factors for non communicable diseases according to sociodemo graphic characteristics among adults Chilean residents. Sci. Rep. 11, 21702. https://​doi.​org/​10.​1038/​s41598-​021-​01167-9 (2021). 21. Hoos, T., Espinoza, N., Marshall, S. & Arredondo, E. M. Validity of the global physical activity questionnaire (GPAQ) in adult Latinas. J. Phys. Act Health 9, 698–705. https://​doi.​org/​10.​1123/​jpah.9.​5.​698 (2012). g p g p , p g ( ) 21. Hoos, T., Espinoza, N., Marshall, S. & Arredondo, E. M. Validity of the global physical activity questionnaire (GPAQ) in adult Latinas. J. Phys. Act Health 9, 698–705. https://​doi.​org/​10.​1123/​jpah.9.​5.​698 (2012). y p g jp 22. Bull, F. C., Maslin, T. S. www.nature.com/scientificreports/ & Armstrong, T. Global physical activity questionnaire (GPAQ): Nine country reliability and validity s J. Phys. Act Health 6, 790–804. https://​doi.​org/​10.​1123/​jpah.6.​6.​790 (2009). y g j 3. Armstrong, T. & Bull, F. Development of the world health organization global physical activity questionnaire (GPAQ). J. Public Health 14, 66–70 (2006). 24. Mealing, N. M., Bowles, H. R., Merom, D. & Bauman, A. Impact of scoring algorithm on physical activity prevalence estimates in Australian adults. J. Sci. Med. Sport 14, 27–32. https://​doi.​org/​10.​1016/j.​jsams.​2010.​05.​003 (2011). 25. Aguilar-Farias, N. & LeppeZamora, J. Is a single question of the global physical activity questionnaire (GPAQ) valid for measur- ing sedentary behaviour in the Chilean population?. J. Sports Sci. 35, 1652–1657. https://​doi.​org/​10.​1080/​02640​414.​2016.​12290​ 10 (2017). 26. Cleland, C. L. et al. Validity of the global physical activity questionnaire (GPAQ) in assessing levels and change in moderate- vigorous physical activity and sedentary behaviour. BMC Public Health 14, 1255. https://​doi.​org/​10.​1186/​1471-​2458-​14-​1255 (2014). ( ) 27. World Health Organization. Obesity: Preventing and Managing the Global Epidemic 1–253 (World Health Organization, 200 28. Ross, R. et al. Waist circumference as a vital sign in clinical practice: A Consensus Statement from the IAS and ICCR Working Group on Visceral Obesity Nat Rev Endocrinol 16 177 189 https://doi org/10 1038/s41574 019 0310 7 (2020) Ross, R. et al. Waist circumference as a vital sign in clinical practice: A Consensus Statement from the IAS and ICCR Working Group on Visceral Obesity. Nat. Rev. Endocrinol. 16, 177–189. https://​doi.​org/​10.​1038/​s41574-​019-​0310-7 (2020).h , g p Group on Visceral Obesity. Nat. Rev. Endocrinol. 16, 177–189. https://​doi.​org/​10.​1038/​s41574-​019-​0310-7 (2020).h 29. The sixth report of the Joint National Committee on prevention, detection, evaluation, and treatment of high blood pressure. Arch Intern Med 157, 2413–2446, https://​doi.​org/​10.​1001/​archi​nte.​157.​21.​2413 (1997).i p g 0. Yousefzadeh, G., Shokoohi, M., Najafipour, H. & Shadkamfarokhi, M. Applying the Framingham risk score for prediction o metabolic syndrome: The Kerman Coronary Artery Disease Risk Study, Iran. ARYA Atheroscler. 11, 179–185 (2015). yh y y y 1. Icaza, G. et al. Estimation of coronary heart disease risk in Chilean subjects based on adapted Framingham equations. Rev. Med Chil. 137, 1273–1282 (2009). 32. Lanas, F., Seron, P., Munoz, S., Margozzini, P. & Puig, T. Latin American Clinical Epidemiology Network Series-Paper 7: Cen- tral obesity measurements better identified risk factors for coronary heart disease risk in the Chilean National Health Survey (2009–2010). J. Clin. Epidemiol. 86, 111–116. https://​doi.​org/​10.​1016/j.​jclin​epi.​2016.​04.​018 (2017). 33. Subramanian, S. V., Delgado, I., Jadue, L., Vega, J. Author contributions d d d G.F., conceived, designed, and helped to write and revise the manuscript; R.R., and G.F., were responsible for coordinating the study, contributed to the intellectual content, and revise the manuscript, R.R., L.F.M.R., A.M., C.D., and G.F., interpreted the data, helped to write and revise the manuscript. All authors contributed to the study design, critically reviewed the manuscript, and approved the final version. www.nature.com/scientificreports/ & Kawachi, I. Income inequality and health: Multilevel analysis of Chilean com- munities. J. Epidemiol. Community Health 57, 844–848. https://​doi.​org/​10.​1136/​jech.​57.​11.​844 (2003).i 34. Saunders, J. B., Aasland, O. G., Babor, T. F., de la Fuente, J. R. & Grant, M. Development of the alcohol use disorders identifica- tion test (AUDIT): WHO collaborative project on early detection of persons with harmful alcohol consumption-II. Addiction 88, 791–804. https://​doi.​org/​10.​1111/j.​1360-​0443.​1993.​tb020​93.x (1993).i p g j 5. Alvarado, M. E., Garmendia, M. L., Acuna, G., Santis, R. & Arteaga, O. Assessment of the alcohol use disorders identification tes (AUDIT) to detect problem drinkers. Rev. Med. Chil. 137, 1463–1468 (2009). 36. Janssen, I. et al. A systematic review of compositional data analysis studies examining associations between sleep, sedentary behaviour, and physical activity with health outcomes in adults. Appl. Physiol. Nutr. Metab. 45, S248–S257. https://​doi.​org/​10.​ 1139/​apnm-​2020-​0160 (2020). 37. McGregor, D. E. et al. Compositional analysis of the associations between 24-h movement behaviours and health indicators among adults and older adults from the Canadian health measure survey. Int. J. Environ. Res. Public Health https://​doi.​org/​10.​3390/​ijerp​ h1508​1779 (2018).f 38. Chastin, S. F., Palarea-Albaladejo, J., Dontje, M. L. & Skelton, D. A. Combined effects of time spent in physical activity, sedentary behaviors and sleep on obesity and cardio-metabolic health markers: A novel compositional data analysis approach. PLoS ONE 10, e0139984. https://​doi.​org/​10.​1371/​journ​al.​pone.​01399​84 (2015).h p g j p 39. Rao, D. P., Orpana, H. & Krewski, D. Physical activity and non-movement behaviours: Their independent and combined associa- tions with metabolic syndrome. Int. J. Behav. Nutr. Phys. Act. 13, 26. https://​doi.​org/​10.​1186/​s12966-​016-​0350-5 (2016). 40 Roman Vinas B et al Proportion of children meeting recommendations for 24 hour movement guidelines and associations with adiposity in a 12-country study. Int. J. Behav. Nutr. Phys. Act. 13, 123. https://​doi.​org/​10.​1186/​s12966-​016-​0449-8 (2016). 41. Master, L. et al. Bidirectional, daily temporal associations between sleep and physical activity in adolescents. Sci. Rep. 9, 7732. https://​doi.​org/​10.​1038/​s41598-​019-​44059-9 (2019). 42. Weatherson, K. A. et al. Post-secondary students’ adherence to the Canadian 24-hour movement guidelines for adults: Results from the first deployment of the Canadian Campus Wellbeing Survey (CCWS). Health Promot. Chronic Dis. Prev. Can. 41, 173–181. https://​doi.​org/​10.​24095/​hpcdp.​41.6.​01 (2021). References Draper, C. E. et al. The South African 24-hour movement guidelines for birth to 5 years: An integration of physical activity, sitting behavior, screen time, and sleep. J. Phys. Act. Health 17, 109–119. https://​doi.​org/​10.​1123/​jpah.​2019-​0187 (2020). y y y 3. Draper, C. E. et al. The South African 24-hour movement guidelines for birth to 5 years: An integration of physical activity, sitting behavior, screen time, and sleep. J. Phys. Act. Health 17, 109–119. https://​doi.​org/​10.​1123/​jpah.​2019-​0187 (2020). https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 | g The authors declare no competing interests. The authors declare no competing interests. © The Author(s) 2022 Additional information Correspondence and requests for materials should be addressed to G.F. Reprints and permissions information is available at www.nature.com/reprints. Reprints and permissions information is available at www.nature.com/reprints. Scientific Reports | (2022) 12:5805 | https://doi.org/10.1038/s41598-022-09729-1 www.nature.com/scientificreports/ Publisher’s note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Publisher’s note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. 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Open Access  This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. © The Author(s) 2022 https://doi.org/10.1038/s41598-022-09729-1 Scientific Reports | (2022) 12:5805 |
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Grabados rupestres, paisaje y prácticas sociales en la cuenca del Río de Las Tunas (Mendoza, Argentina)
Boletín del Museo Chileno de Arte Precolombino
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cc-by
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BOLETÍN DEL MUSEO CHILENO DE ARTE PRECOLOMBINO Vol. 25, Nº 1, 2020, pp. 115-136, Santiago de Chile ISSN 0718-6894 GRABADOS RUPESTRES, PAISAJE Y PRÁCTICAS SOCIALES EN LA CUENCA DEL RÍO DE LAS TUNAS (MENDOZA, ARGENTINA) ROCK ENGRAVINGS, LANDSCAPES AND SOCIAL PRACTICES IN THE LAS TUNAS RIVER BASIN (MENDOZA, ARGENTINA) MARÍA JOSÉ OTSA, ANDRÉS ROCHAB, LOURDES INIESTAC & PABLO CAHIZAD Los grabados rupestres del sitio La Pampa constituyen un conjunto de 794 incisiones lineales, hoyuelos y tacitas conjuntodistribuido en 25 rocas al aire libre. Se realizó un registro de los soportes y sus representaciones con el objetivo de reconocer su configuración espacial interna y contextual en tres escalas: la roca, el sitio y la microrregión. Se interpreta este lugar con una funcionalidad ritual específica, cuyo emplazamiento en relación con rutas de tránsito microrregional conecta sitios de actividades múltiples localizados en dos sectores contrapuestos: la cordillera hacia el oeste y el oasis pedemontano hacia el este. Palabras clave: Arqueología del paisaje, Grabados, Morteros, Valle de Uco, Mendoza. The rock engravings of the La Pampa site, in the foothills of the Las Tunas River basin, include a set of 794 incisions, cavities and cups distributed on 25 open-air rocks. The supports and their representations were recorded to identify their internal and contextual spatial configuration, on three scales –rock, site and microregion. The site is interpreted as having a specific ritual functionality and was located in association with microregional transit routes that connected multiple activity sites located in two contrasting environments– the western mountains and the eastern piedmont oasis. Keywords: Landscape archaelogy, Engravings, Mortar, Valle de Uco, Mendoza. A INTRODUCCIÓN Las representaciones rupestres son producto de determinadas prácticas sociales que permiten la apropiación del paisaje (Criado Boado 1999, Anschuetzs et al. 2001). En este sentido, los sitios poseen una lógica que se expresa a través de la organización y la ordenación del espacio. A la vez, son parte de una red de relaciones que implican no solo las acciones prácticas de la sociedad que ocupó un lugar concreto, sino también la interrelación simbólica con el espacio circundante (Tilley 1996, Thomas 2001, Rocha 2017a). El sitio La Pampa se localiza en el piedemonte a 33º28’33,8”S 69º13’35,5”O, a 1250 msnm, en un cono de deyección que drena el Río de las Tunas cuyo caudal, en este sector, se infiltra dejando múltiples cauces que se activan temporalmente. Está compuesto por un conjunto de 25 rocas al aire libre distribuidas en una superficie de 24,8 ha, con distinto tipo de grabados: tacitas, oquedades e incisiones lineales. Algunas de estas manifestaciones rupestres son características de otros sectores de la María José Ots, incihusa-conicet, iaye- Facultad de Filosofía y Letras, Universidad Nacional de Cuyo, Mendoza, Argentina. E-mail: mjots@mendoza-conicet.gob.ar B Andrés Rocha, Facultad de Filosofía y Letras, Universidad Nacional de Cuyo, Mendoza, Argentina. E-mail: aztlan1456@gmail.com C Lourdes Iniesta, Facultad de Filosofía y Letras, Universidad Nacional de Cuyo, Mendoza, Argentina. E-mail: luiniesta9@hotmail.com D Pablo Cahiza, incihusa-conicet, iaye- Facultad de Filosofía y Letras, Universidad Nacional de Cuyo, Mendoza. Argentina. E-mail: pcahiza@mendoza-conicet.gob.ar Recibido: febrero 2018. Aceptado: julio 2018. 116 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 V REGIÓN Mendoza CHILE LA PAMPA SANTIAGO ARGENTINA Río Las Tunas Río Tun uy án V I REGIÓN 0 100 Km Figura 1. Localización del sitio La Pampa. Figure 1. Location of the La Pampa site. macrorregión centro-oeste argentino-Chile central, en tanto que otras, por el contrario, son novedosas. El estudio de este sitio es parte de las investigaciones que realizamos en la microrregión comprendida por la cuenca del Río de las Tunas (Valle de Uco, Mendoza) (figs. 1 y 2) y que tienen por objetivo general conocer las continuidades y las transformaciones de las estrategias humanas y la ocupación del espacio (Ots 2005, 2007). Es por ello que el análisis de las representaciones rupestres se realizó desde un enfoque espacial multiescalar, a partir de la observación particular de cada roca y de su integración en el sitio y en la microrregión. El centro de Mendoza no cuenta con antecedentes relevantes de manifestaciones rupestres, al contrario de lo que se conoce para otros sectores del centro oeste argentino, como en la provincia de San Juan y en el noroeste y sur de Mendoza (sintetizados, por ejemplo, en Lagiglia 1997 y Schobinger 2009). Se han reconocido sitios con piedras tacitas en algunos sectores del Valle de Uco (arroyo del Novillo Muerto en la cuenca del Río de las Tunas, Viluco y Paso de las Carretas en la cuenca del Tunuyán), como una manifestación particular del área (Schobinger & Gradin 1985, Lagiglia 1997), similar a la que se reconoce en el centro y norte de Chile (entre otros, Gajardo Tobar 1959, Hermosilla & Ramírez 1985, Planella et al. 2017, Troncoso et al. 2017). En el sur de la Provincia, en el Departamento de Malargüe, también se encuentran morteros o tacitas asociados a representaciones grabadas (Schobinger 2009). Los otros motivos representados, oquedades pequeñas e incisiones lineales rectas y profundas, en cambio, solo tienen un antecedente en la región en el sitio Agua de la Tinaja I (valle de Uspallata, Mendoza), donde se hallaron tres incisiones y una oquedad pequeña grabadas en el piso de roca en un nivel fechado en 4510 ± 130 bp (3620-2780 cal. bc) (Bárcena et al. 1985: 353-354 y lám. I c). Motivos similares se encuentran en otras regiones, por ejemplo, el Noroeste Argentino y las sierras centrales de Argentina en las que se han reconocido oquedades pequeñas, como en Abra de los Morteros, Jujuy y varios sitios de la Pampa de Achala y Río Cuarto en Córdoba (Fernández Distel 1994, Ponzio & Reinoso 2013, Recalde 2015, entre otros). También se han registrado incisiones lineales paralelas en sitios tempranos de la Patagonia (vg. Epullan Grande, Arias et al. 2012); sin embargo, no se asemejan al caso de La Pampa. El carácter particular de estas representaciones permite definir los objetivos específicos de nuestra Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.117 SIMBOLOGÍA Sitios arqueológicos Visible No visible Mortero IV A Novillo Muerto San Pablo Rí o de La sT un a s Agua Amarga II LA PAMPA Agua Amarga Puesto La Isla La Isla 0 4.5 Km PERFIL LONGITUDINAL 2.600 2.200 Mortero IV San Pablo 1.800 1.400 La Pampa La Isla 1.000 0,0 0,05 0,1 0,15 0,2 0,25 0,3 0,35 0,4 0,45 0,5 0,55 Figura 2. Detalle de visibilidad desde el sitio La Pampa en la microrregión cuenca del Río de las Tunas. Localización de los sitios y esquema del perfil longitudinal. Figure 2. Detail of visibility from the La Pampa site in the Las Tunas River basin. Location of sites and longitudinal profile. 118 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 investigación: realizar un registro de los soportes y sus representaciones y, en el marco de la arqueología del Paisaje (Criado Boado 1999), reconocer su configuración espacial interna y contextual. PAISAJE, PRÁCTICAS Y GRABADOS EN EL RÍO DE LAS TUNAS Las representaciones rupestres forman parte de la dimensión social del paisaje, son materialidades que se encuentran articuladas e interrelacionadas con el espacio pensado y/o significado. Imprimen un sello en los espacios debido a que son artefactos inmuebles y algunas veces monumentales, implican la modificación del entorno natural para su realización y tienen atributos de visibilidad y persistencia a lo largo del tiempo (Podestá et al. 1991, Valenzuela et al. 2006: 207). La selección y el acondicionamiento de las rocas con una determinada configuración espacial forman parte de una arquitectura o tecnología de construcción del paisaje social que mediante dispositivos artificiales domestica el mundo físico no solo introduciendo hitos arquitectónicos en el espacio natural para ordenarlo según referencias culturales, sino también controlando e imponiendo la pauta de percepción del entorno por parte de los individuos que la usan (Criado Boado 1999: 35). Es por ello que, desde nuestra perspectiva, el estudio de estas representaciones debe abordarse desde la arqueología espacial, que concibe el paisaje como una construcción de las prácticas sociales y culturales y de la vida social (Criado Boado 1993a), y considera que los rasgos formales de la cultura material arqueológica reproducen los modelos de representación y construcción del espacio vigentes en cada sociedad concreta. El paisaje es la objetivación de una intencionalidad, a la cual podemos intentar aproximarnos a partir de la deconstrucción de los elementos que lo componen (Criado Boado 1999) y de establecer sus posibles relaciones, ya que el significado se produce a través del funcionamiento dinámico de las relaciones entre personas, cosas y lugares (Thomas 2001). Siguiendo estas propuestas, las herramientas metodológicas que utilizamos para lograr esta deconstrucción se basan en el análisis de los motivos particulares, su disposición, su asociación con el registro arqueológico y las relaciones y patrones espaciales de las rocas grabadas a partir de múltiples escalas espaciales. Antecedentes microrregionales: arqueología de la cuenca del Río de las Tunas El Río de las Tunas es uno de los pocos del área que en tiempos coloniales conservaba su nombre indígena, Allallpoto (río de la Plata, según el vocabulario del P. Valdivia 1943 [1608]). Se origina en la cordillera frontal, es de caudal permanente y abundante, disminuido en el piedemonte por su aprovechamiento aguas arriba para riego. En su trayectoria conecta los ambientes de cordillera, piedemonte y planicie, conformando una microrregión que permite estudiar patrones de distribución espacial de las ocupaciones humanas en la larga duración. El paisaje cordillerano se caracteriza por vertientes, aguadas y arroyos permanentes, suelos muy húmedos, vegas y abundante vegetación (Adesmia). En el piedemonte, el cauce principal del Río de las Tunas confluye con cursos permanentes que nacen en la cordillera y arroyos que surgen en la depresión alimentados con aguas subterráneas. La vegetación es de Larrea divaricata y Piptochaetium napostaense. El sector pedemontano se presenta como un glacis cubierto por una espesa capa de materiales que desciende hasta los 1200-800 msnm, con limos de origen aluvial y tectónico aptos para agricultura. Hacia el este, la planicie se caracteriza por el paisaje desértico, eólico, con grandes cadenas de médanos cubiertos por la vegetación propia de la “Provincia Fitogeográfica del Monte” (Prosopis flexuosa, Larrea divaricata, Atriplex lampa). A partir de la prospección pedestre de la microrregión y del estudio de sitios, reconocimos un patrón de ocupación espacial diacrónico, por el que distinguimos las ocupaciones del componente Alfarero Medio (fechado en este sector en ca. 1500-600 ap) del Tardío-incaico (ca. 600-400 ap). En el sector cordillerano se localizan sitios del Período Alfarero Medio de tamaño reducido (menor a tres hectáreas), asociados a artefactos y estructuras de molienda. Estos son sitios de ocupación estacional al aire libre y de propósitos específicos (caza, recolección y procesamiento de alimentos). En tanto que, en el sector pedemontano, los asentamientos del mismo período son de mayor tamaño (más de seis hectáreas). Los sitios tardíos se concentran en este último sector, alrededor de los 1000 msnm, y reocupan asentamientos previos, pero son de mayor tamaño (entre 9 y 52 hectáreas) (Ots 2007). Interpretamos que los sitios del piedemonte son Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.119 residenciales de ocupación permanente y de múltiples actividades que incluyen la horticultura (Cahiza & Ots 2014, Ots et al. 2016). Estas comunidades se pueden caracterizar como sociedades de pequeña escala (Cahiza & Ots 2014, Reyes García et al. 2017, entre otros), definidas en términos demográficos como grupos de baja densidad de población. En cuanto a las relaciones sociales, estas se caracterizan por la interacción igualitaria entre los individuos y el contacto durante la vida cotidiana. A nivel político, por sistemas descentralizados o que mantienen la autonomía de una o pocas comunidades locales. En lo económico se caracterizan por la cooperación para la producción (Reyes García et al. 2017) y, en este caso, por una organización de subsistencia de base mixta, cazadora-recolectora y con aporte de la estrategia productiva en el sector pedemontano. METODOLOGÍA Para describir y analizar las relaciones entre los elementos del paisaje, el estudio de las representaciones rupestres se abordó desde tres escalas de análisis (entre otros, Aschero 1997). Se tomó como unidad mínima de registro a cada roca/soporte (primera escala), luego se consideró la distribución espacial de las rocas en el sitio y sus relaciones (entre sí y con el resto de las evidencias) (segunda escala) y finalmente se integraron estos resultados con las investigaciones que se están realizando en la microrregión que conforma la cuenca del Río de Las Tunas (tercera escala). En la primera escala de estudio se realizó un análisis formal de los grabados y las rocas. Las evidencias arqueológicas (soportes grabados y otros restos materiales) se localizaron a través de prospecciones pedestres sistemáticas en un área de 6,9 km2. Se llevó a cabo el registro métrico, morfológico, de distribución y fotográfico de cada soporte. Se clasificó cada uno a través de fichas técnicas que consignan morfología de las representaciones, cantidad, medidas (profundidad, longitud y/o diámetro), distribución en la superficie de las rocas y técnicas de producción. También se registraron las características físicas de los soportes: tipo de roca, medidas de los extremos y georreferenciación por medio del sistema de posicionamiento global (gps) en coordenadas geográficas en el sistema wgs 84. Cada roca fue dibujada utilizando las herramientas del pro- grama Adobe Ilustrator y se tomó como referencia la vista superior. En la segunda escala de análisis se estudió la distribución espacial del registro arqueológico y la topografía del sitio. Para ello, se consideraron datos ambientales que pudieran ser relevantes para las interpretaciones: traza de cauces, vegetación, altura y declinación del terreno y otros elementos topográficos (según la carta del ign a escala 1:250.000). Los datos arqueológicos complementarios del análisis de las rocas se optuvieron mediante la recolección superficial sistemática de restos y la excavación de 13 m2 distribuidos en el sector de mayor concentración de rocas y de materiales en superficie. Se analizó la distribución de las rocas y de los motivos representados mediante la aplicación de estadística geoespacial de interpolación con el método kriging (Wheatley & Gillings 2002). Se utilizaron las coordenadas de localización utm (Universal Transversal Mercator) para establecer las distancias euclidianas y datos xy, en tanto la frecuencia de motivos por roca fueron considerados valor Z. Los datos se procesarons en el software Golden Surfer 8 con la función grid/kriging proyectada en imágenes 3D. Finalmente, en la tercera escala de análisis se estudiaron las asociaciones con el ambiente y los contextos arqueológicos microrregionales que fueron sintetizados en los antecedentes. Tanto la escala de sitio (segunda escala) como la microrregional (tercera escala) tienen en cuenta la visibilidad y las rutas entre los grabados y con distintos elementos del paisaje que los interconectan. La movilidad y la percepción visual son esenciales para comprender la relación humana con el entorno, ya que permiten acceder a las lógicas que hay detrás de la estructura organizacional de una sociedad (Criado Boado 1993b, Fábrega-Álvarez 2016). Para ello, se hizo el análisis de cuenca visual o viewshed, herramienta proporcionada por el software ArcGis 10.3. Esta herramienta es útil para identificar qué rasgos del paisaje son visibles desde el sitio. La cuenca visual se calcula al comparar el ángulo de altitud de un punto con el ángulo de altitud hacia el horizonte local y tiene en cuenta la topografía del terreno que interviene entre el punto de observación y la distancia considerada. Cada celda del ráster de salida recibe un valor que indica cuántos puntos de observador pueden verse desde una ubicación (en este caso, una de las concentraciones del sitio La Pampa localizado con gps) considerando Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 120 el modelo digital de terreno (obtenido de una imagen satelital aster). Se otorgó un valor de 1 a cada celda que puede visualizarse desde un punto de observación, y de 0 en caso contrario. Para el análisis de tránsito, se registró el track con gps de las sendas que interconectan los diferentes sectores del sitio y las rocas con grabados. El estudio de las rutas de tránsito o caminos que unen diferentes puntos arqueológicos comprende diversos aspectos, como las escalas espaciales, la accesibilidad, las dificultades del terreno, las prácticas culturales, etcétera (Fábrega-Álvarez 2016). En este trabajo buscamos analizar el desplazamiento en su relación con las estrategias de circulación, percepción y conexión entre diferentes direcciones. u ovales. Los grabados lineales representan el 47%. En estos casos, la técnica que se utilizó es la de incisión, probablemente realizada con un artefacto filoso (Álvarez & Fiore 1995). Mediante un corte o hendidura en la superficie de la roca se produjo un estrechamiento hacia la base de la incisión que culmina en forma angular y deja un surco en forma de V. Algunas de estas incisiones son más profundas, anchas y de lados convergentes en V pulidos, lo que sugiere una o varias intervenciones posteriores (figs. 4b y 5). Algunas alcanzan hasta 3,9 cm de profundidad. Las diferencias en cuanto a longitud, ancho y profundidad de los grabados incisos se encuentran combinadas en todos los soportes, en algunos casos solo presentan incisiones finas y poco profundas (LP12 y LP16), mientras que en el resto las hay de diferentes tamaños en una misma roca que alcanzan, por ejemplo, 57 cm de longitud y 3 cm de profundidad en LP24 (tabla 1 y figs. 4, 5 y 6). No encontramos un patrón en la orientación de las incisiones, que se encuentran dispuestas en distintas direcciones. Entre los grabados circulares distinguimos, por tamaño de diámetro y profundidad, las oquedades circulares pequeñas (también llamadas “hoyuelos”, v.g. Ponzio & Reinoso 2013, Recalde 2015) de las tacitas o concavidades más profundas. Las técnicas de grabado pudieron ser machacado y horadación (Álvarez & Fiore 1995). Las oquedades representan el 39% de grabados. Su tamaño oscila entre 2 y 4 cm de diámetro y 1 y 3 cm de profundidad. En tanto que las tacitas representan el 14% de grabados y tienen forma circular y oval. Las circulares miden entre 6 y 13 cm de diámetro y entre 2 y 5 cm de profundidad. Todas conforman una tacita cóncava bien Primera escala: análisis de rocas con grabados Sintetizaremos los principales resultados de este análisis, que ha sido desarrollado extensamente por Rocha (2017 a y b). Se registraron y posicionaron 25 rocas de distinto tamaño y forma con grabados (denominadas LP1 a LP25) (fig. 3 y tabla 1), las cuales tienen una orientación específica este-oeste/norte-sur. La mayoría de los soportes intervenidos son rocas metamórficas (24 son esquistos), y una única roca es ígnea. Estas son producto de metamorfismo regional, han sido trasladadas desde la cordillera por los aluviones del Río de Las Tunas y se encuentran distribuidas por toda la zona. Se registraron en total 794 grabados (tabla 1). Las representaciones son no figurativas, geométricas. En principio, se distinguen dos tipos: lineales y circulares SIMBOLOGÍA LP16 RA C ZONA AMPLIADA Río de Las Tunas calle LP1 LP4 LP3 10 8 9 7 12 13 5 6 14 LP21 17 19 18 15 LP Nombre del soporte LP25 RA LP20 al 8 LP2 LP22 RA mpa 9 LP16 11 SECTOR OESTE La Pa nci C2 RA Rocas aisladas LP23 rov i C3 Rut ap C1 Concentraciones de rocas RA 0 300 m Figura 3. Plano de distribución de soportes en La Pampa. Figure 3. Distribution of supports at the La Pampa site. LP24 C4 SECTOR ESTE Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.121 Tabla 1. Frecuencia de grabados y tipo por roca. Table 1. Engraving frequency and rock type. SOPORTE NÚMERO INCISIONES LINEALES OQUEDADES TACITAS TOTAL LP1 0 21 0 21 DIBUJO 1m LP2 2 1 0 3 1m LP3 0 3 0 3 1m LP4 6 0 0 6 1m LP5 0 0 1 1 1m LP6 0 6 4 10 1m LP7 0 7 0 7 1m LP8 0 5 1 6 1m LP9 4 1 0 5 1m LP10 104 3 5 112 1m LP11 0 0 1 1 1m LP12 2 1 0 3 1m 122 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 SOPORTE NÚMERO INCISIONES LINEALES OQUEDADES TACITAS TOTAL LP13 1 0 0 1 DIBUJO 1m LP14 0 2 0 2 1m LP15 59 0 6 65 1m LP16 6 0 0 6 1m LP17 0 0 4 4 1m LP18 6 0 2 8 1m LP19 4 0 0 4 1m LP20 0 0 10 10 1m LP21 0 0 31 31 1m LP22 0 3 2 5 1m LP23 38 37 5 80 1m LP24 125 215 35 375 1m LP25 17 4 4 25 1m Total 374 309 111 794 Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.123 a c b Roca sin grabados LP10 LP10` 0 0 1m 10 cm LP10 LP11 1m LP11 50 cm Figura 4. Conjunto LP 10’-LP10 y LP11: a) LP10; b) detalle de grabados de LP10; c) fotografía y esquema del conjunto y la cordillera vistos desde el este. Figure 4. LP 10’-LP10 and LP11 grouping: a) LP10; b) detail of LP10 engravings; c) drawing and photo of the grouping, facing westward with the mountains in the background. acabada, excepto el soporte LP8 que contiene un tipo de mortero cupuliforme con una profundidad de 11 cm y 14 cm de diámetro. Los grabados ovales son de mayor tamaño y están realizados en solo cuatro soportes (LP5, LP6, LP11, LP20) del total. Las medidas varían entre los 40 y 20 cm del eje mayor y entre los 18 y 8 cm del eje menor, y la profundidad entre 15 y 7 cm. Presentan diferentes formas y tamaños con una base irregular donde se observa que un extremo es más profundo que el otro, lo que supone que es la zona donde se ejercía la mayor presión. Estos tres tipos de grabados (incisiones lineales, oquedades y tacitas) están combinados de distintas maneras en las rocas (tabla 1 y fig. 7). No reconocimos ningún patrón formal en la frecuencia, distribución, orientación o combinación de los distintos tipos de grabados. Otro tipo menos frecuente de intervención es el canteado de cuatro de las rocas, identificado en el conjunto que forman LP10, LP10’ y LP11 y en la roca aislada LP21. Entre los soportes destacan LP10, LP15, LP23 y LP24 por su mayor tamaño y visibilidad en comparación con el resto de las rocas grabadas, y por la mayor cantidad y variedad de representaciones (fig. 7). En el sector Oeste, LP10 es una de las rocas con mayor significación por la cantidad y combinaciones de impresiones sobre ella (14,1% de grabados del sitio). La forma es irregular, con la zona de grabados dispuesta en un ángulo de 45° que asciende de noreste a suroeste. Se registraron 104 incisiones lineales de largos que a 0 50 cm b Figura 5: a) soporte LP15; b) detalle de los grabados de LP15. Figure 5: a) LP15 support; b) detail of engravings on LP15. varían entre los 2 cm hasta los 25 cm, en algunos casos presentan superposiciones y en otros se unen formando secciones en V. En cuanto a los otros tipos de grabados, contiene cinco tacitas en una línea descendente en dirección suroeste-noreste. Los tamaños de las tacitas 124 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 a b 0 1m 0 c 1m d 0 1m Figura 6. Dibujos de los paneles del soporte LP24: a) panel norte; b) panel oeste; c) panel este; d) fotografía panel este. En gris se destacan los planos y las irregularidades de los soportes. Figure 6. Drawings of LP24 support panels: a) north panel; b) west panel; c) east panel; d) photo of east panel. The grey shaded areas indicate the planes and irregularities of the supports. Incisiones lineales Oquedades Tacitas 250 200 150 100 50 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Figura 7. Frecuencia de grabados por soporte y por tipo. Referencias: T: tacitas; O: oquedades; I: incisiones lineales. Figure 7. Frequency of engravings by support and engraving type. T: cups; O: cavities; I: linear incisions. Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.125 Figura 8. Roca aislada LP21. Figure 8. Solitary rock LP21. VISTA SUPERIOR 0 1m VISTA SUPERIOR VISTA PERFIL 1.7 m 0 95 cm 1.3 m Figura 9. Roca aislada LP23. En gris se destacan los planos y las irregularidades de los soportes. Figure 9. Solitary rock LP23. The shaded grey areas indicate the planes and irregularities of the supports. 126 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 disminuyen de diámetro a medida que descienden en la roca y en el extremo superior suroeste se hallan tres oquedades dispuestas en forma perpendicular a las tacitas (fig. 4a). El soporte LP15 tiene superficie irregular redondeada, cuya cara superior se dispone en un ángulo que va en descenso con orientación oeste-este (figs. 5a y b). Cuenta con dos tipos de grabados (8,2% del sitio), seis tacitas entre 8 y 11 cm de diámetro y 59 incisiones lineales con un promedio de 12,5 cm de largo que se disponen por toda la roca en múltiples direcciones sin un patrón definido. Estas son mucho más profundas que las de LP10 y alcanzan hasta 2,5 cm (fig. 5b). El soporte LP21 fue descubierto en excavación, ya que los grabados más sobresalientes se encontraban al nivel de piso actual. En la cara superior horizontal, 31 tacitas fueron grabadas (27,9% de esa categoría), las cuales se concentran en el sector sureste de la roca. El soporte tiene una forma cuadrada bastante regular, lo que hace pensar en la posibilidad de que haya sido canteado (fig. 8). LP23 y LP24 se encuentran en el extremo este del sitio y destacan por la cantidad de intervenciones que presentan. LP23 (10,1% de grabados del sitio) se halla desplazada de la posición original por la construcción de un sendero moderno y presenta una forma semiesférica con grabados distribuidos en todo el soporte. Exhibe los tres tipos de grabados (5 tacitas, 37 oquedades, 38 incisiones lineales) distribuidos aleatoriamente sin un patrón de orientación o posición (fig. 9). LP24 contiene la mayor cantidad de grabados de todo el sitio (47,2%), y también se encuentran representados los tres tipos de intervenciones. El soporte tiene cinco caras/paneles grabados, uno superior y cuatro laterales (fig. 6). La cara superior contiene los tres tipos de grabados con la mayor concentración de oquedades (215), incisiones lineales (23) y tacitas (29). La cara lateral norte desciende desde la cara superior en un ángulo de 45° aproximadamente de sur a norte y contiene incisiones lineales (22) combinadas con tacitas (6) (fig. 6a). El resto de las caras laterales presentan en su mayoría incisiones con profundidades y longitudes muy superiores al resto de los soportes. En la cara lateral oeste estas tienen longitudes y profundidades menores (fig. 6b). La cara sur tiene incisiones más profundas que alcanzan los 3,9 cm y una longitud de 56 cm, mientras que la cara este tiene una incisión que alcanza los 47 cm de longitud y 3 cm de profundidad (figs. 6 c y d). Las rocas LP23 y LP24 presentan grabados distribuidos en todas sus caras, a diferencia del resto de los soportes que concentran las intervenciones en su cara superior horizontal. Particularmente, el soporte LP24 tiene, además de la mayor frecuencia de grabados, unas medidas superiores al resto de los soportes con una superficie de 3,30 m2 y una altura que alcanza los 1,25 m. Segunda escala: análisis del sitio El sitio La Pampa se localiza en el sector pedemontano de la microrregión. Tiene una orientación longitudinal oeste-este, que sigue la dirección del Río de las Tunas (figs. 1 y 2). Los cauces del río demarcan los límites naturales de la distribución de rocas en el sitio: el cauce activo actual al norte, y otro cauce inactivo al sur (fig. 3). Las rocas se localizan en la encrucijada de dos caminos actuales: la ruta provincial 89 (dirección noreste-suroeste) y la calle La Pampa (dirección este-oeste). El sitio tiene una superficie plana, con pendiente de entre 2º y 10º. La vegetación se caracteriza por matorrales de Larrea divaricata y Piptochaetium napostaense y cactáceas. Las rocas con grabados están distribuidas en una superficie de 24,8 ha. Algunas se encuentran concentradas y otras dispersas, por lo cual, con un criterio operativo para realizar análisis de distribución espacial, distinguimos dos sectores de concentración denominados Sector Oeste y Sector Este (fig. 3). A su vez, dentro de cada uno de estos sectores, distinguimos concentraciones a partir de las distancias entre diferentes grupos de rocas: cada concentración está compuesta por dos o más rocas ubicadas a una distancia no mayor a 50 m, en tanto que las que se encuentran a mayor distancia se consideran “rocas aisladas”. Estas últimas son LP16, LP20, LP21, LP22 y LP23. Distinguimos cuatro concentraciones denominadas, de oeste a este, C1, C2 y C3 en el Sector Oeste y C4 en el Sector Este (fig. 3). C1 está formada por 4 rocas (LP1, LP2, LP3 y LP4), dos de las cuales se localizan sobre la margen del paleocauce. Este conjunto demarca el límite oeste del sitio. C2 se ubica también sobre el paleocauce, a unos 90 m de distancia de C1 en dirección sur-este. Concentra la mayor cantidad de rocas intervenidas (LP5, LP6, LP7, LP8, LP9, LP10’, LP10, LP11, LP12, LP13, LP14, LP15. Fig. 10), y la mayor variedad de combinaciones de grabados (Rocha 2017a). En este conjunto, la disposición de las rocas grabadas tiene forma circular. Otras rocas próximas, que no contribuyen a esta disposición espacial, se Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.127 SECTOR OESTE-CONCENTRACIÓN 2 (C2) LP12 LP11 LP8 LP13 LP10 LP5 LP9 LP6 LP15 LP7 LP14 0 2m Figura 10. Distribución espacial de soportes en la concentración 2 (C2). Figure 10. Spatial distribution of supports in concentration 2 (C2). desestimaron como soportes para realizar grabados. Los soportes LP10 y LP11, junto con una roca canteada sin grabados, que denominamos LP10’, asemejan un panel con gran cantidad y variedad de intervenciones (tabla 1 y fig. 4). De sur a norte, LP10’ y LP10 presentan dos lados canteados rectos enfrentados y separados entre sí por 15 cm de distancia. El conjunto se completa con la roca LP11, con una tacita ovalada y el lado este canteado para formar una superficie de apoyo. Desde una perspectiva este-oeste las tres rocas asociadas tienen de fondo la cordillera Frontal con picos de más de 5000 m de altura y se presenta como una escena que impacta visualmente (fig. 4c). Enfrentados en dirección oesteeste, los soportes LP5 y LP6, asociados espacialmente, tienen tacitas ovales. Un conjunto de rocas dispuestas en el extremo oeste de este sector tienen una posición alineada en dirección noreste-suroeste (LP8, LP9, LP10’, LP10, LP11 y LP12). La organización espacial de las rocas proyecta puntos de fuga y ejes hacia los cuatro puntos cardinales. C3 está integrada por las rocas LP17, LP18 y LP19. Se localiza a unos 80 m de distancia de C2, en dirección noreste. De este modo, las tres concentraciones descritas se proyectan hacia tres puntos cardinales: oeste (C1), sur (C2) y este (C3). La roca aislada LP16, ubicada a 80 m al norte de C2, marcaría el extremo norte del conjunto. El resto de las rocas (LP20 a LP25) se localizan en una proyección hacia el este de los conjuntos principales, lo que fortalece la direccionalidad oeste-este de estos conjuntos. LP20 está a 120 m de distancia de C2 y a 60 m de C3; en tanto que LP21 se ubica a 500 m de C2. En ambas solo se grabaron tacitas (fig. 8). Desde LP21 a una distancia de 250 m aproximadamente rumbo noreste se encuentra LP22, junto al cauce activo del Río de las Tunas. Esta roca fue desplazada en tareas de limpieza de los terrenos de cultivo, por lo que su localización actual rompe la direccionalidad oeste-este en la que se ubica el resto de los soportes. El soporte LP23 se emplaza a 600 m respecto a LP22. A 68 m hacia el este de LP23 encontramos la última concentración, C4, que agrupa a LP24 y LP25. Estos soportes se encuentran alineados en dirección oeste-este y son los más relevantes del sitio, por tener la mayor superficie grabada y la mayor concentración de representaciones (tabla 1, fig. 7). 128 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 MOTIVOS 300 260 Sector Este 30 0 20 220 0 10 0 180 0 Sector Oeste 000 97. 6.2 500 96. 6.2 CO O RD EN 000 96. 6.2 AD AS UT 500 95. 6.2 M 000 95. 6.2 47 7. 50 0 47 8. 00 0 47 8. 50 0 47 9. 00 0 47 9. 50 0 48 0. 00 0 TM CO U DAS NA E D OR 48 0. 50 0 48 1. 00 0 140 100 60 20 0 -20 -60 Figura 11. Interpolación kriging de grabados rupestres del sitio la Pampa. Figure 11. Kriging interpolation of the rock engravings at the La Pampa site. Se generó un estadístico geoespacial de interpolación kriging con la distribución de motivos grabados del sitio, a partir del cual se desarrollaron representaciones 3D con una capa de datos del total de los motivos (fig. 11) y otras tres con las categorías de incisiones, oquedades y tacitas (fig. 12). La imagen ráster resultante refleja los sectores Oeste, el cual presenta el 35,01% de los motivos, y Este con el 60,45%. La discriminación por categoría de motivos identifica una intensidad mayor de la cantidad de incisiones lineales en torno a LP24 (33,4% de las incisiones), LP23 (10,16 %) y LP25 (4,6%) reflejada en un pico de la variable en el Sector Este, en la derecha de la figura 12a. El Sector Oeste concentra una influencia de menor importancia alrededor de LP10 (27,8% de las incisiones) y LP15 (15,8%). Las oquedades muestran una distribución espacial similar a la anterior, aunque con valores Z un poco menores y más desequilibrada en favor del Sector Este. Las rocas LP24 (69,6%) y LP23 (12%) vuelven a representar un pico notable de intensidad de la variable, mientras que el Sector Oeste concentra una pequeña concentración en LP1 (6,8%) (fig. 12b). Finalmente, la categoría de las tacitas muestra picos más suavizados y atenuados debido a que representa la frecuencia de menor importancia estadística. Nuevamente se destaca, relativamente, el Sector Este con LP24 (31,5% de las tacitas), seguido por el Sector Oeste (LP20, 9%). Sin embargo, la roca aislada LP21 representa una superficie suavizada realzada que concentra el 27,2% (fig. 12c). Con el propósito de contextualizar los grabados realizamos excavaciones en el Sector Oeste, donde se encuentra la mayor concentración de artefactos en superficie y de rocas intervenidas (no encontramos materiales en superficie en el Sector Este). Trece cuadrículas de 1 m2 fueron excavadas mediante niveles artificiales de 5 cm de profundidad, ya que no se identificaron diferencias estratigráficas. Se alcanzaron profundidades de entre 30 y 40 cm hasta las que se reconocieron niveles de ocupación, y debajo de los cuales se encontró roca. Diez cuadrículas se localizaron en C2, en torno a las rocas que presentaban mayor actividad cultural, como LP10/LP11 (sondeos 2, 4 y 5) y LP5/LP6 (sondeos 6 y 7) y en la zona libre entre el conjunto de rocas de este sector (sondeos 1, 3, 8, 9 y 10) (fig. 13). Otros tres Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.129 INCISIONES (a) LP25 LP24 LP23 10 0 160 50 140 0 6.2 CO 9 LP10 00 7.0 LP15 48 48 O 0 .50 RD EN 96 6.2 AD AS 0. 47 47 000 96. 6.2 UT M 47 00 5 95. 6.2 47 000 95. 6.2 8. 47 7. 50 9. 00 8. 50 9. 0. 00 50 48 1. 00 0 50 0 100 0 80 0 0 60 0 00 120 0 40 0 20 LP24 LP23 OQUEDADES (b) 0 10 0 0 48 LP1 48 00 7.0 .29 6 48 500 96. 6.2 0. 47 47 0 .00 96 6.2 9. 9. 47 500 95. 6.2 47 000 95. 6.2 47 8. 50 8. 7. 00 50 1. 00 0. 50 0 0 00 0 50 00 0 0 0 0 0 TACITAS (c) 20 0 0 500 96. 6.2 48 LP21 LP15 LP20 LP10 LP6 00 97. 6.2 LP24 LP25 LP23 0. 9. 47 0 .00 6 500 95. 6.2 000 95. 6.2 9. 47 47 47 7. 50 0 0. 48 47 9 6.2 1. 48 8. 8. 50 00 0 00 50 00 0 0 0 0 0 DAS 0 00 50 NA RDE UTM O CO Figura 12. Interpolación kriging por categorías de motivos grabados en La Pampa: incisiones (a), oquedades (b) y tacitas (c). Figure 12. Kriging interpolation of motif categories at the La Pampa site: incisions (a), cavities (b) and cups (c). 130 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 SONDEOS EN CONCENTRACIÓN 2 LP12 S10 LP11 S3 S5 LP10 LP13 S9 S2 S4 LP8 LP7 LP9 LP6 LP5 S8 S6 S7 LP4 0 2m Figura 13. Plano de distribución de sondeos en la concentración 2 (C2) del Sector Oeste. Figure 13. Distribution of test pits performed at concentration 2 (C2) in the Western Sector. LP16 C3 calle L a Pam Líneas de tránsito cauce vinc ial Rocas aisladas Paleo 89 LP21 SIMBOLOGÍA Concentraciones de rocas LP22 pa pro SECTOR C2 OESTE Río de Las Tunas Ruta C1 call es i n Finc ternas a Ik al LP23 C4 SECTOR ESTE 0 300 m Figura 14. Mapa de tránsito, con indicación de los senderos y caminos actuales. Figure 14. Map of transit routes, with present-day trails and roads included. Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.131 sondeos nos permitieron descubrir la roca LP21 (fig. 8). No se encontraron restos orgánicos (botánicos o faunísticos), solo cerámicos y líticos. Se registraron 44 fragmentos cerámicos (nmv= 44). El conjunto es tecnológica y tipológicamente homogéneo: pastas en distintos matices de marrón (muy baja frecuencia de grises, N=3) y superficies alisadas. Algunos tiestos presentan decoración incisa con chevrones (N=5) e imbricada (N=1), característica del componente cerámico Agrelo (Canals Frau 1956), fechado en proximidades de este sitio entre los siglos v y xiv dc (Ots et al. 2016). Los fragmentos de pucos y de ollas o jarras indican que serían de tamaños pequeños (aproximadamente 14 cm de diámetro de borde, 8 cm de diámetro de base). Ninguno de los tiestos tiene señales de termoalteración, por lo que suponemos la asociación de esta cerámica con actividades de servicio y consumo de alimentos y bebidas. El conjunto lítico está compuesto por desechos de talla, un núcleo, percutores, un artefacto de molienda (mano fragmentada) y una roca horadada. La mayoría de los desechos son lascas primarias y secundarias (N= 78) con filos naturales y sin rastros de formatización, el 95% de las cuales se realizó sobre rocas basálticas. Los percutores (N=4) se hicieron sobre rocas ígneas. Son cantos rodados acondicionados, con un extremo potencialmente activo con astillado irregular producido por las marcas de percusión y otro pasivo. Al comparar el tipo de roca de los soportes con los desechos líticos y las herramientas (percutores) se observa que estas últimas tienen una dureza superior a la de las rocas intervenidas, en una razonable correlación de durezas entre los bloques intervenidos y los materiales líticos que aparentemente fueron utilizados para la intervención. El análisis de tránsito se realizó a partir de la demarcación de las principales líneas de accesibilidad entre los conjuntos de soportes. Se marcaron con gps los senderos existentes en el terreno que tuvieran un acceso reconocible. Se comprobó que las rutas están orientadas por un punto de interconexión oeste-este entre los sectores de mayor significación (fig. 14). La ruta comienza desde C1 y continúa en dirección oestesureste hacia C2; desde aquí surge un sendero hacia el norte que conduce a la roca más extrema en sentido norte (LP16) cercana a un brazo activo del Río de las Tunas. También desde C2 y hacia el este surge un desvío noreste que se interconecta con C3. Desde C3 sigue un sendero de 70 m aproximadamente que conecta con la roca LP20 y a unos 250 m llega a la roca LP21. En este punto se observa que hay una continuidad del sendero hacia el este hasta LP 22, 23, 24 y 25 (fig. 14). Cada sector se encuentra en una declinación de 10º aproximadamente, con una altura que va en descenso de oeste a este y que costea los brazos del Río de las Tunas. El tránsito sigue la dirección de los cauces de agua y remarca una zona que se encuentra rodeada y limitada por dichos cauces. En el Sector Oeste se destaca una simetría en las distancias entre los conjuntos C1, C2 y C3, pero a partir de LP20 y LP21 los soportes se alejan, por lo que esa simetría se rompe. Para el análisis de visibilidad se tomaron dos puntos de referencia: el centro de la concentración 2 (C2) y la roca aislada LP21. Se observó que no hay intervisibilidad entre ambos puntos y que el alcance visual se encuentra limitado a un espacio contiguo, debido a que la vegetación y las rocas sin intervención dificultan el alcance visual. La altura actual de los soportes, alrededor de 40 cm más bajos que en los niveles arqueológicos, y la escasa pendiente del terreno no permiten que estos sean identificados desde los puntos de accesibilidad actuales más cercanos (la calle La Pampa y la ruta 89). Tercera escala: la microrregión, cuenca del Río de las Tunas La investigación a escala microrregional se realizó mediante la prospección pedestre sistemática e intensiva de un área discreta de 600 km2 en la cuenca del Río de las Tunas (Ots 2005, 2007). De acuerdo con las propuestas de la ecología del paisaje (Forman & Godron 1986), consideramos el río como un corredor que conecta y comunica distintos ambientes, en este caso, la cordillera (5000-1700 msnm) y el oasis pedemontano (1700-700 msnm). En las proximidades de este río y de sus afluentes (arroyos Santa Clara, Los Tábanos-Mortero, del Novillo Muerto, San Pablo, Las Rosas, Villegas y Agua Amarga) hemos localizado asentamientos estacionales en el sector cordillerano y de ocupación permanente (aldeas) en el sector pedemontano, datados en ca. 1500-400 años ap. En ellos se reconocen múltiples funciones asociadas con actividades domésticas y de subsistencia (entre otros, Ots 2005, Ots et al. 2011, 2016) (localización de los sitios en figura 2). En los sitios que se encuentran en el borde del sector cordillerano hasta los 1650 es frecuente encontrar 132 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 rocas con morteros, conanas y manos de moler. En uno de ellos, en la terraza del Arroyo Las Rosas, dos rocas aisladas presentan grabados similares a los de La Pampa (tacitas y hoyuelos) (Ots 2005). El más relevante de estos sitios cordilleranos, por el tamaño y forma de la roca y la cantidad y tamaño de las cavidades (N=3), es Arroyo del Novillo Muerto. En este caso, el análisis de los microrrestos rescatados de las tacitas cupuliformes (Schinus sp., Prosopis sp., Larrea sp.), sumado al resto del registro arqueológico, nos sugiere para estas concavidades profundas la funcionalidad del procesamiento de vegetales, aunque no pueden descartarse otras funciones (Ots et al. 2016). La distribución de rocas con morteros y otros artefactos de molienda en las proximidades de los cursos de agua se puede interpretar en relación con la explotación económica de los recursos de recolección disponibles en el piedemonte y la cordillera (Ots 2007, Ots et al. 2016). Este patrón está asociado a las ocupaciones estacionales del Período Alfarero Medio. A pesar de la proximidad de La Pampa a sitios pedemontanos multicomponentes, con reocupación tardía-inca, como Agua Amarga o Puesto La Isla (distantes 1,5 y 6 km del sitio, respectivamente), no encontramos restos que indiquen que haya sido reocupado durante esta etapa. Tampoco se registraron representaciones que puedan asignarse al Tardío-inca, como en otros casos regionales (v.g. Tunduqueral en el Valle de Uspallata. Schobinger 2009). Este dato acota el rango de ocupación y producción de las representaciones. Desde el sitio, localizado en un sector transicional entre las ocupaciones del sector cordillerano y del oasis pedemontano, se logra el control visual directo hacia áreas muy específicas: la cordillera al oeste y la planicie al este; en el primer caso debido a su monumentalidad, y en el caso de la planicie la visibilidad es plena debido a la diferencia altitudinal con respecto a este sector (aproximadamente 500 m). La composición cartográfica general de la figura 15 muestra la visibilidad desde la concentración C2 hacia el oeste. Las celdas de color en la figura son los espacios visibles desde el sitio. La transparencia de capa muestra un ráster de sombreado bajo el ráster de elevación e incorpora la salida procedente de un análisis de cuenca visual que representa la relación entre visibilidad y terreno. Observamos que, desde La Pampa, la cordillera es ampliamente visible. Se muestra el resultado de cuenca visual (total de superficie visible SIMBOLOGÍA Visible No visible Rí o de La sT un as LA PAMPA 0 9 Km Figura 15. Mapa de visibilidad desde C2 hacia el oeste. Figure 15. Map indicating visibility from C2, looking west. desde un punto) y también de la intervisibilidad con los otros sitios (fig. 2). Las pruebas aplicadas permiten establecer una correlación entre la ubicación topográfica y el grado de visibilidad. En el detalle de la figura 2 se observa que no hay visibilidad desde los otros sitios de la microrregión hacia La Pampa, ni desde La Pampa hacia los otros sitios. DISCUSIÓN Al integrar las distintas escalas de análisis (los soportes grabados, el sitio y la microrregión) podemos proponer la discusión de algunas interpretaciones sobre los grabados del sitio La Pampa. Los antecedentes de estudios sobre representaciones rupestres han destacado que, en algunos casos, estas suelen encontrarse en relación con rutas que conectan distintos elementos del paisaje y en sectores donde estas se cruzan (v.g. Bradley et al. 1999). En esos casos, los sitios se encuentran, como en La Pampa, relacionados con poblaciones con un patrón móvil de explotación de recursos, en sectores del paisaje asociados con ese tipo de movilidad, con las rutas tradicionales de trashumancia y con la demarcación de esos recursos (Bradley Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.133 et al. 1994, Troncoso 2008). Las bases residenciales y los asentamientos estacionales se localizan en otros sectores del paisaje, en tanto que puntos significativos son “marcados” con las representaciones rupestres. Otro aspecto significativo de su localización es la visibilidad directa hacia áreas específicas. Los grabados rupestres del Río de las Tunas están asociados a poblaciones con movilidad residencial, con ocupaciones permanentes en el sector pedemontano y estacionales en la cordillera, que definimos como sociedades de pequeña escala. Los asentamientos se identifican por concentraciones de materiales en superficie, ya que las construcciones residenciales eran de material perecedero, por lo que las rocas grabadas de La Pampa son las únicas estructuras visibles que se conservan de estas ocupaciones en la microrregión. El Río de Las Tunas es el corredor que conectaba los sitios estacionales de molienda, las rocas aisladas con grabados, las bases residenciales y el conjunto de grabados de La Pampa. El sitio es un marcador que se encuentra en el cruce de dos vías de tránsito, una que se dirige hacia la cordillera (donde se encuentran las nacientes del Río de Las Tunas y el volcán Tupungato, 6570 msnm) y otra que conecta esta microrregión con otros sectores de ocupación indígena en el Valle de Uco (v.g. El Manzano y el paso del Portillo de Piuquenes que comunica con el valle de Aconcagua). Este sitio se localiza en un espacio transicional entre el ambiente cordillerano y el oasis pedemontano (Rocha 2017), y si bien la visibilidad del espacio inmediato es reducida, desde allí se ejerce un control visual tanto de la cordillera como de la planicie hasta unos 25 km de distancia. El sitio tiene una direccionalidad oeste-este; desde él se dominan áreas de recursos diferenciados hacia ambas direcciones: para caza y recolección hacia el oeste, complementados con la producción de alimentos hacia el este (Ots et al. 2016). La distribución espacial de las rocas manifiesta una organización del paisaje, una determinada “arquitectura” (Criado Boado 1999: 35) que la distingue de otro tipo de sitios del área, y que en el caso de La Pampa parece estar estructurada por la concentración C2. Si bien el mayor número de representaciones se encuentran en C4, en C2 es donde se da la mayor acumulación de rocas que tienen intervenciones complejas (combinación de los tres tipos de representaciones). Al contrario de lo que sucede en C4, en C2 la selección de las rocas que se acondicionaron y sobre las que se realizaron los grabados más complejos del sitio tiene una disposición espacial intencional que conforma un espacio circular, que asociamos a un espacio simbólico desde donde se realiza un control visual circular hacia todas las direcciones. Por otro lado, desde allí se conecta el tránsito entre los sectores Oeste y Este y se proyectan líneas de fuga hacia las rocas aisladas más alejadas. En el sentido de Troncoso (2008), la disposición espacial de los bloques incita o domestica el movimiento. El eje principal de tránsito es una ruta donde los conjuntos de rocas son marcadores de movimiento que señalan el camino en una dirección de desplazamiento esteoeste/oeste-este. Los análisis de visibilidad arqueológica fueron realizados con el propósito de comprender cuál sería la estructura visual del paisaje en relación con las percepciones de los grupos asentados en el sitio La Pampa. El alcance de la visibilidad tiene relación con los aspectos físicos, como en este caso la topografía y la cobertura vegetal del área de estudio; y con los aspectos culturales, como sería el interés selectivo por los objetivos visuales, las posibilidades de desplazarse cuando se mira y la organización cultural del espacio (Criado Boado 1993b). Aunque porciones de la cordillera se ven desde todos los sitios hacia el oeste, desde La Pampa se logra una perspectiva más completa del conjunto imponente que incluye los cerros de más de 5000 m, entre ellos el Tupungato. El análisis de las cuencas visuales y del tránsito permite acceder a la estrategia social de apropiación del espacio y la forma de construcción del paisaje (Criado Boado 1993b). La estrategia de visibilización, a su vez, está en función de la voluntad de visibilidad, es decir, presupone una determinada actitud hacia el entorno en un contexto cultural determinado. De acuerdo con estos análisis, La Pampa es un sitio que no tiene conexión visual con los otros de la microrregión: tanto con los asentamientos temporarios del sector cordillerano, más alejados, como con los asentamientos permanentes del oasis pedemontano, más próximos. A pesar de la alta accesibilidad al sitio desde las rutas próximas, la visibilidad es nula desde el corredor del Río de Las Tunas, ya que los soportes no tienen gran impacto visual. Esto hace pensar en un acceso restringido a quienes no tienen un conocimiento previo de su localización. Sin embargo, el sitio domina visualmente cuencas que constituyen potenciales áreas de explotación de recursos y las rutas de desplazamiento 134 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 entre estas cuencas. Esto se puede entender como un modo de legitimación y/o apropiación del espacio. Al ampliar la escala de estudio e integrar los contextos del Período Agroalfarero Temprano-medio de la macrorregión conformada por el centro-oeste argentino y Chile central, se puede encontrar mayor afinidad entre las representaciones de La Pampa con el sector trasandino, ya que allí es donde se concentra la mayor cantidad de sitios con “piedras tacitas” alrededor de los 33º LS (Gajardo Tovar 1959, Planella et al. 2017). Para el caso del área entre el valle de Limarí y el río Maule, Planella et al. (2017) han interpretado su emplazamiento en relación con límites identitarios o demarcaciones territoriales. Como en nuestro caso, las tacitas se relacionan con sociedades de baja escala del Período Alfarero Temprano. Si bien se ha comprobado su uso para prácticas de molienda de vegetales (silvestres y domésticos) y otras actividades de subsistencia en los sitios, datos como la localización de las rocas en las inmediaciones de fuentes de agua y la complejidad de las representaciones que no en todos los casos tendrían una funcionalidad económica, relacionan estos espacios con prácticas ceremoniales supracomunales (Planella et al. 2017). La combinación de los tres tipos de grabados de La Pampa, sin embargo, no tiene antecedentes conocidos en la macrorregión. Particularmente, las incisiones lineales son las manifestaciones más originales. Los datos sobre la cronología y la funcionalidad del sitio son por el momento relativos, a partir de los componentes artefactuales y su recurrencia en el área. Otros sitios de la cuenca del Río de Las Tunas con morteros se han asociado a actividades domésticas, de obtención y elaboración de alimentos debido a la presencia de otros artefactos de molienda y procesamiento (cerámicos, líticos) y de restos de consumo (Ots 2005, Ots et al. 2016). Sin embargo, los morteros de La Pampa son escasos y de menor tamaño y profundidad, y están asociados a los otros tipos de grabados descritos, por lo que su funcionalidad podría ser distinta a la del procesamiento de alimentos y será indagada con futuros análisis de microdesechos. El conjunto lítico y cerámico es escaso y estaría asociado en parte a la producción de los grabados (desechos con filos naturales y percutores de materias primas duras) y al consumo de alimentos y bebidas, más que a su preparación en el sitio (recipientes cerámicos pequeños, delgados y en baja frecuencia decorados, sin marcas de termoalteración). Los motivos grabados en las rocas son en su mayoría abstractos, geométricos, y no encontramos patrones en su frecuencia, orientación, ni distribución. Desde nuestra interpretación de los soportes como marcadores del espacio, y en relación con la interpretación del emplazamiento de los grabados macrorregionales, algunos motivos parecerían esculpir formas en las rocas, representaciones abstractas del paisaje (v.g. conexión entre los hoyuelos y las incisiones en LP10, que así pueden contener y transportar líquido desde la cima hasta la base del panel. Fig. 4a). También podrían ser “marcas no-representacionales”, resultado de algún tipo de acción “no-visual” sobre la roca con una finalidad que desconocemos (Ouzman 2001). Aunque por el momento no podemos determinar si los grabados fueron realizados en un único o en sucesivos eventos, la escasez de artefactos en superficie y en distintos niveles de excavación en La Pampa sugiere ocupaciones efímeras, eventuales aunque recurrentes (periódicas, estacionales, anuales), de este espacio. Esto lo distingue del resto de los sitios residenciales y de uso doméstico de la microrregión. Su emplazamiento (en el sentido de Aschero 1997: 18 y ss.) en un sector alejado de aquellos y sin visibilidad desde la ruta que los conecta en la cuenca del Río de Las Tunas, hace suponer un acceso público restringido, acotado a determinadas prácticas no cotidianas y a determinadas personas. Su funcionalidad ceremonial puede interpretarse en relación con las prácticas de agregación social que implicó la producción de los grabados y la realización de rituales asociados con el control y la explotación de los ambientes circundantes conectados por el Río de Las Tunas. CONCLUSIONES En la investigación sobre los grabados rupestres del Río de las Tunas se procuró considerar tres dimensiones espaciales complementarias: la espacial-formal, la simbólica-ritual y la social. El abordaje metodológico para estudiar estas dimensiones fue multiescalar, abarcando el grabado como unidad mínima de análisis, los soportes, la estructuración espacial del sitio y las relaciones contextuales micro y macrorregionales. Los grabados del sitio La Pampa son particulares tanto en la micro como en la macrorregión centro oeste argentino-Chile central, por lo que su interpretación social no cuenta con marcos de referencia. Mediante Grabados rupestres en el Río de Las Tunas / M. J. Ots et al.135 la metodología de relevamiento y análisis de los datos propuesta, se registraron 794 grabados de distinto tipo y sus asociaciones espaciales en los 25 soportes y en el sitio. Se destaca el uso de una misma tradición técnica para su ejecución, la cual pudo ser compartida por distintas generaciones del componente Alfarero Temprano-medio, fechado en la microrregión entre los siglos v y xiv. A pesar de la proximidad de sitios ocupados durante la dominación incaica regional, no se registraron componentes artefactuales que puedan indicar la reclamación de este sitio durante esa ocupación. El análisis de la estructura formal del espacio físico se orientó finalmente a interpretar el espacio vivo, dinámico. Así, propusimos una interpretación de cómo los grabados rupestres del sitio La Pampa se integran en el paisaje en una red de relaciones con otros sitios y con otros elementos. Esta deconstrucción permitió comprender la intencionalidad del emplazamiento del sitio en relación con rutas de tránsito microrregionales, configuradas en torno al cauce principal del área, el Río de Las Tunas. De este modo, el sitio La Pampa demarca la conexión entre sitios de actividades múltiples localizados en dos sectores contrapuestos: la cordillera hacia el oeste y el oasis pedemontano hacia el este. Desde este emplazamiento, se asegura el control visual sobre un amplio marco espacial hacia la cordillera y la planicie, también paisajes contrapuestos. Finalmente, la integración del registro arqueológico sugiere el uso eventual del sitio en relación con las prácticas de producción de los grabados y con una funcionalidad específica ritual. Agradecimientos Al Sr. Manuel Cosio, propietario de la finca Gran Espíritu, por su autorización y predisposición para que se pudieran realizar estas investigaciones. A Mariana Raviolo (geóloga), Alejandrina Groissman (fotógrafa), Roberto Bárcena y a los alumnos que participaron de las tareas de campo y laboratorio: Marina Cataldo, Anabel Caniza, Martina Manchado, Gonzalo García, Enrique Gárate, Facundo Quintas, Celina Juárez. A los editores y evaluadores del artículo, cuyas observaciones contribuyeron a mejorarlo. REFERENCIAS Álvarez, M. R. & Fiore, D. 1995. Recreando imágenes: diseño de experimentación acerca de las técnicas y los artefactos para realizar grabados de arte rupestre. Cuadernos del inapl 16: 215-239. Anschuetzs, K., Wilshusen, R. & Scheick, C. 2001. An archaeology of landscapes: perspectives and directions. Journal of Archaeological Research 9 (2): 152-197. Arias, P., Crivelli, E., Montero, M., Fernández, M. & Teira Mayolini, L. C. 2012. Grabados del Holoceno Temprano en la cueva Epullán Grande, Provincia del Neuquén, Argentina: nuevas investigaciones. En L’art pléistocène dans le monde / Pleistocene art of the world / Arte pleistoceno en el mundo. Actes du Congrès ifrao, Tarascon-sur-Ariège, septembre 2010-Symposium Art pléistocène dans les Amériques, J. Clottes, Dir., pp. 793-806. Tarascon-sur-Ariège: Société Préhistorique Ariège-Pyrénées. Aschero, C. 1997. De cómo interactúan emplazamientos, conjuntos y temas. Revista del Museo de Historia Natural xvi (1): 17-28. Mendoza. Bárcena, J. R., Roig, F. & Roig, V. 1985. Aportes arqueo-fitozoológicos para la prehistoria del N.O. de la Provincia de Mendoza: la excavación de Agua de la Tinaja i. Trabajos de Prehistoria 42: 311-363. Bradley, R., Criado Boado, F. & Fábregas, R. 1994. Rock art research as landscape archaeology: a pilot study in Galicia, northwest Spain. World Archaeology 25 (3): 374-390. Cahiza, P. & Ots, M. J. 2014. Análisis distribucional de sociedades de pequeña escala en el centro oeste argentino. Discusión de las estrategias metodológicas y las interpretaciones en el marco de los estudios regionales. En Distribución espacial en sociedades no aldeanas: del registro arqueológico a la interpretación social, F. Falabella, L. Sanhueza, L. Cornejo & I. Correa, Eds., pp. 199-219. Sociedad Chilena de Arqueología. Serie Monográfica, 4. Canals Frau, S. 1956. Algunos aspectos de la cultura de Agrelo (Provincia de Mendoza). Anales de Arqueología y Etnología 12: 7-18. Criado Boado, F. 1993a. Límites y posibilidades de la arqueología del paisaje. spal, Revista de Prehistoria y Arqueología de la Universidad de Sevilla 2: 9-55. Criado Boado, F. 1993b. Visibilidad e interpretación del registro arqueológico. Trabajos de Prehistoria 50: 39-56. Criado Boado, F. 1999. Del terreno al espacio. Planteamientos y perspectivas para la arqueología del paisaje. capa, 6. Grupo de Investigaciones en Arqueología del Paisaje. Universidad de Santiago de Compostela. De Valdivia, L. 1943 [1608]. Vocabulario. Los textos millcayac del Padre Luis de Valdivia (con un vocabulario españolallentiac-millcayac). Estudio y presentación preliminar de F. Márquez. Revista del Museo de La Plata, Tomo ii, Antropología 12. Instituto del Museo de la Universidad Nacional de La Plata. 136 Boletín del Museo Chileno de Arte Precolombino, Vol. 25, No 1, 2020 Fábrega-Álvarez, P. 2016. Un alto en el camino. Notas acerca del uso de sig en los análisis de movilidad en arqueología. En Manual de tecnologías de la información geográfica aplicadas a la arqueología. Cursos de formación permanente para arqueólogos, M. C. Mínguez & E. Capdevilla, Coords., pp. 161-182. Madrid: Museo Arqueológico Regional de Madrid. Fernández Distel, A. 1994. Noticias sobre el sitio arqueológico de Abra de los Morteros y otros lugares de valor prehistórico en la región de Santa Bárbara (Jujuy, República Argentina). En Taller De costa a selva. Producción e intercambio entre los pueblos agroalfareros de Los Andes Centro Sur, M. Albeck, Ed., pp. 255-294. Buenos Aires: Instituto Interdisciplinario Tilcara-Facultad de Filosofía y Letras uba. Forman, R. & Godron, M. 1986. Landscape ecology. Nueva York: John Willey and sons. Gajardo, R. 1959. Investigaciones acerca de las “piedras con tacitas” en la zona central de Chile (Comunicación preliminar). Informe sobre los estudios realizados en el fundo Las Cenizas (Placilla-Valparaíso). Anales de Arqueología y Etnología 14-15. Hermosilla, N. & Ramírez, J. 1985. Las Cenizas: evidencias de ritualismo en torno a las piedras tacitas. En Actas del ix Congreso Nacional de Arqueología Chilena, pp. 307-320. La Serena: Museo Arqueológico de La Serena. Lagiglia, H. 1997. Estudio de los petroglifos de Ponontrehue (sur de Mendoza). Actas y Memorias del xi cnaa. Revista del Museo de Historia Natural de San Rafael 13 (1): 269-287. Ots , M. J. 2005. Prospección arqueológica de la cuenca del Río de las Tunas (Dptos. Tupungato-Tunuyán, Mendoza). Cuadernos de la Facultad de Humanidades y Ciencias Sociales 29: 43-60. Ots , M. J. 2007. La presencia incaica en el Valle de Uco, Mendoza. Tesis para optar al grado de Doctora en Historia. Facultad de Filosofía y Letras, Universidad Nacional de Cuyo. Ots, M. J., García Llorca, J. & Cahiza, P. 2016. Recursos y estrategias de consumo en el centro de Mendoza entre los siglos x-xvi ad. Intersecciones en Antropología 17: 375-387. Ouzman, S. 2001. Seeing is deceiving: rock art and the nonvisual. World Archaeology 33 (2): 237-256. Planella, M. T., Santander, G. & Mc Rostie Bustamante, V. 2017. Aportes a la discusión sobre piedras tacitas en Chile central. Intersecciones en Antropología 18: 05-17. Podestá M., Manzi, L., Horsey, A. & Falchi, M. 1991. Función e interacción a través del análisis temático en el arte rupestre. En El arte rupestre en la arqueología contemporánea, pp. 40-53. Buenos Aires: Instituto de Arqueología, Facultad de Filosofía y Letras, uba. Ponzio, A. & Reinoso, D. 2013. Los petroglifos de villa El Chacay (Dpto. Río Cuarto, Córdoba) y su relación con el paisaje. Anuario de Arqueología (5): 333-343 Recalde, M. A. 2015. Paisajes con memoria. El papel del arte rupestre en las prácticas de negociación social del sector central de las Sierras de Córdoba (Argentina). En Condiciones de posibilidad de la reproducción social en sociedades prehispánicas y coloniales tempranas en las sierras pampeanas (República Argentina), J. Salazar, Comp., pp. 235-266. Córdoba: Centro de Estudios Históricos Prof. Carlos S.A. Segreti. Reyes-García, V., Zurro, D., Caro, J. & Madella, M. 2017. Small-scale societies and environmental transformations: coevolutionary dynamics. Ecology and Society 22 (1): 15. Rocha, A. 2017a. Grabados rupestres en la cuenca del Río de las Tunas (Valle de Uco, Mendoza). Tesis para optar al grado Licenciado en Historia con orientación en Arqueología. Facultad de Filosofía y Letras. Universidad Nacional de Cuyo. Rocha, A. 2017b. Registro arqueológico de la cuenca media del Río de las Tunas (Valle de Uco, Mendoza): prospecciones y excavaciones en el sitio La Pampa. En Actas de las I Jornadas de Investigación de la Facultad de Filosofía y Letras. Mendoza: Universidad Nacional de Cuyo. Schobinger, J. 2009. Arqueología y arte rupestre de la región cuyana. Mendoza: Facultad de Filosofía y Letras, Universidad Nacional de Cuyo. Schobinger, J. & Gradin, C. 1985. Arte rupestre de la Argentina. Cazadores de la Patagonia y agricultores andinos. Madrid: Encuentro. Thomas, J. 2001. Archaeology of place and landscape. En Archaeological theory today, I. Hodder, Ed., pp. 165-186. Cambridge: Cambridge University Press. Tilley, C. 1996. The powers of rocks: topography and monument construction on Bodmin Moor. World Archaeology 28 (2): 161-176. Troncoso M., A. 2008. Arquitectura imaginaria y ritualidad del movimiento: arte rupestre y espacio en el cerro Paidahuen, Chile central. En Sed non satiata ii. Acercamientos sociales en la arqueología latinoamericana, F. Acuto & A. Zarankin, Comps., pp. 277-301. Córdoba: Encuentro. Troncoso, A., Pino, M. & Belmar, C. 2017. Piedras tacitas, prácticas socioespaciales, comunidades y paisaje en la cuenca hidrográfica del río Limarí (norte semiárido, Chile). En Actualizaciones en el estudio de piedras tacitas: nuevas perspectivas, C. Belmar, L. Contreras & O. Reyes, Eds., pp. 67-92. Santiago: Serie Monográfica de la Sociedad Chilena de Arqueología 6. Valenzuela, D., Briones, L. & Santoro, C. 2006. Arte rupestre en el paisaje: contextos de uso del arte rupestre en el valle de Lluta, norte de Chile, Períodos Intermedio Tardío y Tardío. En Tramas en la piedra. Producción y usos del arte rupestre, D. Fiore & M. Podestá, Eds., pp. 205-220. Buenos Aires: Sociedad Argentina de Antropología-Asociación Amigos del ina-World Archeological Congress. Wheatley, D. & Gillings, M. 2002. Spatial technology and archaeology. The archaeological application of gis. Nueva York: Taylor & Francis.
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Emergency endovascular repair of aortoiliac aneurysms in COVID-19 times
Jornal Vascular Brasileiro
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ratamento endovascular das emergências dos aneurismas aortoilíacos em tempos de COVID-19 Rafael de Athayde Soares1 , Marcus Vinícius Martins Cury1, Luiz Maurício da Silva Júnior1, Patrícia Weiber Schettini Figueiredo1, Danilo Augusto Pereira Nery da Costa1, Camila de Freitas Correa1, Nayara de Arruda Cáceres1, Roberto Saciloto1 Abstract In this paper, we describe a case series of four patients who were admitted with emergencies related to aortic aneurysms over a 3-day period and were treated with endovascular repair. The first patient was an 81-year-old female with a history of abdominal pain and a ruptured aortic aneurysm diagnosed by AngioCT-scan. The second patient was a 63-year-old male with a history of oral digestive bleeding and an AngioCT-scan showing an aortoenteric fistula. The third patient was a 77-year-old female with sudden-onset abdominal pain and ruptured right common iliac aneurysm. The fourth patient presented with abdominal pain and an AngioCT-scan showed aortic rupture. All four patients were discharged with no major complications or surgical mortality. These case series show that despite the Covid-19 pandemic situation, since elective surgeries decreased, vascular emergencies have increased. Keywords: COVID-19; endovascular surgery; aortic surgery; ruptured aortic aneurysms. Copyright© 2021 The authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ISSN 1677-7301 (Online) ISSN 1677-7301 (Online) ISSN 1677-7301 (Online) THERAPEUTIC CHALLENGE THERAPEUTIC CHALLENGE Resumo Relatamos uma série de casos de quatro pacientes consecutivos, admitidos com emergências relacionadas a aneurismas aortoilíacos em um período de 3 dias e submetidos a tratamento endovascular. A primeira paciente, do sexo feminino, com 81 anos e com histórico de aneurisma da aorta, apresentou dor abdominal iniciada nos últimos 12 dias. O segundo paciente era do sexo masculino, com 63 anos e foi admitido com hematêmese 3 dias antes da admissão, com angiotomografia demonstrando fistula aortoentérica. A terceira paciente, do sexo feminino e com 77 anos, foi admitida com quadro de ruptura de aneurisma da artéria ilíaca comum direita. O quarto paciente consecutivo apresentou dor abdominal iniciada 2 semanas antes da internação e aneurisma roto da aorta. Todos os quatro pacientes apresentaram emergências aortoilíacas e receberam alta sem complicações maiores ou mortalidade cirúrgica. O relato desta série de casos demonstra que, apesar da situação pandêmica da COVID-19, uma vez que as cirurgias eletivas diminuíram, as urgências vasculares aumentaram. Palavras-chave: COVID-19; tratamento endovascular; aneurisma de aorta; cirurgia da aorta. How to cite: Soares RA, Cury MVM, Silva Júnior LM. et al. Emergency endovascular repair of aortoiliac aneurysms in COVID-19 times. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 No conflicts of interest declared concerning the publication of this article. ubmitted: August 13, 2020. Accepted: September 28, 2020. The study was carried out at Hospital do Servidor Público Estadual de São Paulo, São Paulo, SP, Brazil. Copyright© 2021 The authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. INTRODUCTION Since the outbreak of the SARS-Cov-2 infection pandemic, a considerable impact on elective surgeries has been observed, with a fall in the number of elective repairs performed. This is because most patients preferred to postpone elective surgery and also because surgical societies all round the world have recommended postponement of elective surgery.1 Given the uncertainties related to COVID‐19, the surgical community acknowledges the need for resource preservation, but undue postponement of surgery to treat progressive diseases would result in another public health crisis.2i Figure 1. Axial Angio-CT scan showing ruptured aorta in case 1. One of the first reports regarding the Covid-19 outbreak and vascular surgeries was published by Ng et al.,3 in whose vascular surgery department the number of aorta-related cases have decreased, since they have tended to postpone patients with abdominal aortic aneurysms who were asymptomatic. Figure 2. Aortography in anteroposterior plane showing infra- renal aneurysm in case 1. The objectives of this paper are to report a case series of patients with consecutive aortoiliac aneurysm emergencies and their outcomes and to present a review of vascular surgery practice during the Covid-19 infection pandemic. The Research Ethics Committee approved this study (decision number 4.091.832). Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 1/7 Aortoiliac aneurysm emergencies in COVID-19 times Figure 1. Axial Angio-CT scan showing ruptured aorta in case 1. Case 1 An 81 year-old female patient, with arterial hypertension, diabetes, and a history of an aortic aneurysm that had been diagnosed in 2015, presented at dawn on a Saturday and was admitted with abdominal pain with onset during the preceding 12 days. In view of the known history of aortic aneurysm, she underwent an AngioCT-scan that showed a ruptured pararenal aortic aneurysm with maximum diameter of 72mm and retroperitoneal hematoma (Figure 1). Although the aortic neck had conical morphology, it had a length of 20mm before the start of the dilated portion of the aorta (Figure 2). The patient was hemodynamically stable and underwent endovascular aortic repair under general anesthesia, with bilateral groin incisions to expose the femoral arteries. A 36x14x103 Endurant II main body, combined with a 16x20x156 limb extension on the right side and two limb extensions on the left side (16x16x82 and 16x16x124) were successfully implanted (Figure 3). The patient progressed satisfactorily after the surgery and remained hemodynamically stable. On the second postoperative day she had leukocytosis (18 x 109 cells/L) associated with coughing. A chest Figure 2. Aortography in anteroposterior plane showing infra- renal aneurysm in case 1. CT showed left lung consolidation suggestive of bacterial pneumonia. A diagnosis of SARS-Cov-2 was ruled out with laboratory tests and chest CT. She was put on Piperacillin-Tazobactan for 7 days, without needing admission to the intensive care unit and recovered satisfactorily, before being discharged 9 days after the endovascular repair. Case 2 A 63-year-old male patient with a history of alcoholic liver cirrhosis was admitted during the Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 2/7 Aortoiliac aneurysm emergencies in COVID-19 times Figure 4. Axial AngioCT-scan showing intraintestinal bleeding, secondary to an aortoenteric fistula in case 2. Figure 3. Postoperative anteroposterior aortography with a 36x14x103 Endurant, a 16x20x156 limb extension on the right side and two limb extensions on the left side (16x16x82 and 16x16x124). Figure 4. Axial AngioCT-scan showing intraintestinal bleeding, secondary to an aortoenteric fistula in case 2. Figure 5. Preoperative angiography in anteroposterior projection. Figure 3. Postoperative anteroposterior aortography with a 36x14x103 Endurant, a 16x20x156 limb extension on the right side and two limb extensions on the left side (16x16x82 and 16x16x124). Saturday morning with a history of oral digestive bleeding with onset 3 days before admission. He underwent upper digestive endoscopy that detected stomach bleeding. His past medical history reveled previous spine surgery, with vertebral fixation due to discitis. Six months later, a huge aortic pseudoaneurysm was diagnosed and an aorto- aortic Dacron bypass had been performed at our hospital. An AngioCT-scan showed an aortoenteric fistula (Figure  4). He was hemodynamically stable and underwent endovascular repair with an Endologix AFX –22-70/I16-30 + Vela 25-25/C75, totally percutaneously, with three Abbott Perclose Proglide devices (Figures 5 and 6). After surgery, the patient progressed well and another upper digestive endoscopy showed no bleeding at all. Additionally, the patient also underwent CT-guided aspiration of a peri-aortic collection which when cultured revealed multisensitive E. coli. Esophagus- stomach-duodenum barium radiography ruled out aorto-enteric fistula. The patient initiated oral diet, without complications, and was discharged on oral antibiotic therapy 11 days after the surgery. Figure 5. Preoperative angiography in anteroposterior projection. Case 3 The third patient was a 77-year-old female active smoker with hypertension and congestive heart failure who was admitted on the Saturday afternoon with sudden abdominal pain. Once more, an AngioCT-scan showed a ruptured right common iliac aneurysm, without hemorrhagic shock (Figure 7). Under general Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 3/7 Aortoiliac aneurysm emergencies in COVID-19 times Figure 6. Postoperative angiography in anteroposterior plane with AFX – Endologix 22-70/I16-30 and Vela 25-25/C75. anesthesia, both femoral arteries were exposed and endovascular repair was carried out with a 24x82 Cook Zenith with a 13x74 left limb extension and 12x45x58 ZBIS on the right with a 16x39 limb extension. There was hypogastric aneurysm involvement, so the device was connected to the upper gluteal artery with a 6x100 Gore Viabahn and 9x80 Bard Fluency (Figures 8 and 9). The patient’s postoperative course was satisfactory and she was discharged 5 days after surgery. Case 4 The fourth consecutive patient was a 64-year- old male active smoker with preexisting right limb claudication who arrived on the Monday afternoon with an abdominal pain that had had onset 2 weeks before admission, with symptoms worsening 2 days before he presented. An AngioCT-scan showed a ruptured aortic aneurysm with 53mm maximum diameter (Figure 10), with right common iliac and external iliac occlusion, and a proximal neck length of 25mm. This patient underwent endovascular repair with a 23x14x102 monoiliac Endurant II for the left limb and a 16x10x82 left iliac limb extension, after left common iliac angioplasty with an 8x40 catheter balloon in order to enable the endograft to pass. A left groin incision was made to expose the femoral artery and a left brachial puncture was used to perform Figure 6. Postoperative angiography in anteroposterior plane with AFX – Endologix 22-70/I16-30 and Vela 25-25/C75. Figure 7. AngioCT-scan in coronal reconstruction with a right common iliac artery rupture in case 3. Figure 8. Preoperative aortography in anteroposterior projection in case 3. Figure 8. Preoperative aortography in anteroposterior projection in case 3. Figure 7. AngioCT-scan in coronal reconstruction with a right common iliac artery rupture in case 3. Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 4/7 Aortoiliac aneurysm emergencies in COVID-19 times Figure 11. Intraoperative anteroposterior projection aortography in case 4. Figure 9. Postoperative aortography in anteroposterior projection in case 3; 24x82 Zenith Cook, 13x74 left limb extension, and 16x39 right limb extension, with a 12x45x58 ZBIS and a 6x100 Viabahn and a 9x80 Fluency in the right internal iliac artery. Figure 11. Intraoperative anteroposterior projection aortography in case 4. Figure 9. Postoperative aortography in anteroposterior projection in case 3; 24x82 Zenith Cook, 13x74 left limb extension, and 16x39 right limb extension, with a 12x45x58 ZBIS and a 6x100 Viabahn and a 9x80 Fluency in the right internal iliac artery. Figure 12. Post-endoprosthesis implant aortography in anteroposterior projection showing 23x14x102 monoiliac Endurant II for the left limb with a 16x10x82 left iliac limb extension. Figure 10. AngioCT-scan in axial plane showing aortic rupture in case 4. Figure 10. AngioCT-scan in axial plane showing aortic rupture in case 4. arteriographic control (Figures 11, 12). This patient recovered without further complications and was discharged from hospital 3 days after surgery. Figure 12. Case 4 Post-endoprosthesis implant aortography in anteroposterior projection showing 23x14x102 monoiliac Endurant II for the left limb with a 16x10x82 left iliac limb extension. Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 DISCUSSION Abdallah et al.,4 reported the impact of the Covid-19 pandemic on vascular surgery in Paris. They observed a rising number of acute arterial events in COVID-19 patients with no prior vascular history. These acute arterial events included acute thrombosis of the abdominal aorta, carotid, and peripheral arteries that could be the revealing symptom of COVID-19. The four cases reported in this paper resume very well this condition. This was a very unusual situation in our vascular department; to perform 4 consecutive emergency endovascular aneurysm repairs over the course of 3 days. Even more so if compared with Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 5/7 Aortoiliac aneurysm emergencies in COVID-19 times the same period the previous year, May 2019, when there were no cases of emergency aortic repair, only elective repairs. All of these patients had postponed their treatment because of fear of going to hospital and facing the risk of Covid-19 infection, which resulted in them being operated on an emergency basis, which could have ended in a fatal outcome. Fortunately, all four procedures went well and all of the patients survived and were discharged from hospital, without being infected with Covid-19, at least in its symptomatic form, since routine testing of asymptomatic patients had not been included in the infectious diseases protocol of our hospital. of aerosolization during laparotomy or at the time of evacuation of abdominal gas and smoke during laparoscopy.12,13 A paper published by Safari et al.14 analyzing multiple clinical specimens obtained during emergency abdominal surgery in 4 COVID-19 patients showed that SARS-CoV-2 RNA was found in the feces of 3 patients and in the duodenal wall of a patient with perforated peptic ulcer, although real time reverse transcriptase polymerase chain reaction (RT-PCR) assay of abdominal fluid was negative for the virus.i Another interesting finding in this case report was the endovascular repair in a patient with aortoenteric fistula (AEF). Endovascular repair of AEF has emerged as an evolving treatment option with potentially improved mortality outcomes. The patient in this present paper probably had a secondary AEF. A recent meta-analysis reported an in-hospital mortality rate of 7% for 98 well-documented cases of endovascular AEF repair from the literature. CONCLUSION The Covid-19 pandemic crisis is a challenging situation that has increased the number of urgent and emergency surgeries in the vascular world. The four patients reported in this paper had excellent outcomes with EVAR treatment, showing that vascular surgery departments must be prepared to promptly treat their patients’ urgent needs despite the SARS-Cov-2 situation. Furthermore, compared with the same period last year, May 2019, when there were only elective repairs and no cases of emergency aortic repair in our vascular department, this paper shows a significant increase in aortic emergencies during the COVID-19 pandemic crisis. This paper reports four cases of emergency aortic aneurysms that were all treated with EVAR and all of the patients had satisfactory outcomes. The EVAR‐1, DREAM, and OVER trials all showed an early survival benefit for EVAR, when compared to open aortic surgery.7-9 Large-scale studies, meta-analyses from IMPROVE have shown EVAR to confer reduction in hospital mortality and morbidity in patients with favorable aneurysm morphology.10,11 Therefore, the current best evidence favors an “EVAR first” policy for ruptured AAA, which has been followed in our surgical department with favorable results. Moreover, particularly during the COVID-19 pandemic crisis, the choice of endovascular treatment to manage these aortic emergencies may be preferred to avoid infection during surgery, since contamination of the operating field and personnel may occur because DISCUSSION When suitable, endovascular treatment of AEF is a safe procedure, with fewer complications and better outcomes than open surgery repair, particularly during the COVID-19 pandemic crisis.15 Mousa and Broce5 also published a paper reporting the impact of Covid-19 on the vascular interventionist, showing that the number of surgeries was restricted to only urgent or emergency cases, disrupting routine patient flow, causing delays in data entry for new and follow-up visits, and having an unprecedented impact on the vascular specialty. Similarly, in our vascular department elective surgeries had been canceled, due to the need to maintain the intensive care unit prepared to receive patients with Covid-19 infections. All elective aortic aneurysm surgeries were postponed. Only urgent and emergency surgeries are being performed. We are facing a pandemic crisis situation that is changing vascular surgery and other surgical specialties, increasing emergency procedures and challenging vascular surgery all over the world. That is the importance of reporting the changing surgical flow and numbers of surgeries, as well as the causes of 4 consecutive ruptured aortic aneurysms in 3 days, and highlighting the necessity of choosing the endovascular approach to avoid COVID-19 infection and contamination. Another study by Pini et al.,6 observed an increase in the number of urgent aortic aneurysm cases in 2020 compared with 2019 (24% vs. 18%). These results are similar to those we present in this paper, in which we report four consecutive emergency aortic aneurysms over a period of 3 days, and an increasing of urgent aortic aneurysm cases in 2020 compared with 2019 (56% vs 23%). These conditions could be because of the reduction in outpatient visit flows at our department and also the patients’ fear of acquiring Covid-19 infection, situations that can delay appropriate treatment of the patient. 1. Spinelli A, Pellino G. COVID‐19 pandemic: perspectives on an unfolding crisis. Br J Surg. 2020;107(7):785-7. http://dx.doi. org/10.1002/bjs.11627. PMid:32191340. REFERENCES 1. Spinelli A, Pellino G. COVID‐19 pandemic: perspectives on an unfolding crisis. Br J Surg. 2020;107(7):785-7. http://dx.doi. org/10.1002/bjs.11627. PMid:32191340. Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 6/7 Aortoiliac aneurysm emergencies in COVID-19 times 2. Mayol J, Fernández Pérez C. Elective surgery after the pandemic: waves beyond the horizon. Br J Surg. 2020;107(9):1091-3. http:// dx.doi.org/10.1002/bjs.11688. PMid:32383479. 14. Safari S, Keyvani H, Malekpour Alamdari N, et al. Abdominal surgery in patients with COVID-19: detection of SARS-CoV-2 in abdominal and adipose tissues. Ann Surg. 2020;272(3):e253-6. PMid:32568751. 3. Ng JJ, Ho P, Dharmaraj RB, Wong JCL, Choong AMTL. The global impact of COVID-19 on vascular surgical services. J Vasc Surg. 2020;71(6):2182-2183.e1. PMid:32247029. 15. Kakkos SK, Bicknell CD, Tsolakis IA, Bergqvist D, Hellenic Co- operative Group on Aortic Surgery. Editor’s choice - Management of secondary aorto-enteric and other abdominal arterio-enteric fistulas: a review and pooled data analysis. Eur J Vasc Endovasc Surg. 2016;52(6):770-86. PMid:27838156. 4. Ben Abdallah I. Early experience in Paris with the impact of the COVID-19 pandemic on vascular surgery. J Vasc Surg. 2020;72(1):373. PMid:32335307. 5. Mousa AY, Broce M. Impact of COVID-19 on the vascular interventionist. Vascular. 2020;28(6):842-3. http://dx.doi. org/10.1177/1708538120930141. PMid:32484426. Correspondence Rafael de Athayde Soares Av. Ibirapuera, 981 - Indianópolis CEP: 04028-000 - São Paulo (SP), Brazil Tel.: +55 (11) 5583-7001 E-mail: rafaelsoon@hotmail.com 6. Pini R, Faggioli G, Vacirca A, Gallitto E, Mascoli C, Attard L et al. Is it possible to safely maintain a regular vascular practice during the COVID-19 pandemic? Eur J Vasc Endovasc Surg. 2020;60(1):127-34. http://dx.doi.org/10.1016/j.ejvs.2020.05.024. Author information 7. Greenhalgh RM, Brown LC, Kwong GP, Powell JT, Thompson SG, EVAR trial participants. Comparison of endovascular aneurysm repair with open repair in patients with abdominal aortic aneurysm (EVAR trial 1), 30‐day operative mortality results: randomised controlled trial. Lancet. 2004;364(9437):843-8. PMid:15351191. RAS - PhD and MSc in Ciências da Saúde, Instituto de Assistência Médica ao Servidor Público Estadual de S. Paulo (IAMSPE); Full member, Sociedade Brasileira de Angiologia e Cirurgia Vascular (SBACV); Board certified in Cirurgia Vascular, Ecografia Vascular and Cirurgia Endovascular, SBACV; primary physician at Serviço de Cirurgia Vascular, Hospital Regional Sul and Hospital do Servidor Público Estadual de São Paulo (HSPE). MVMC - PhD, Universidade de São Paulo; preceptor, Serviço de Cirurgia Vascular e Endovascular, Hospital do Servidor Público Estadual de São Paulo (HSPE). LMSJ, PWSF, DAPN, CFC and NAC - Cirurgia Vascular residents, Hospital do Servidor Público Estadual de São Paulo (HSPE). RS - PhD, Faculdade de Medicina, USP and Diretor, Serviço de Cirurgia Vascular e Endovascular, Hospital do Servidor Público Estadual de São Paulo (HSPE). RAS - PhD and MSc in Ciências da Saúde, Instituto de Assistência Médica ao Servidor Público Estadual de S. Paulo (IAMSPE); Full member, Sociedade Brasileira de Angiologia e Cirurgia Vascular (SBACV); Board certified in Cirurgia Vascular, Ecografia Vascular and Cirurgia Endovascular, SBACV; primary physician at Serviço de Cirurgia Vascular, Hospital Regional Sul and Hospital do Servidor Público Estadual de São Paulo (HSPE). 8. Blankensteijn JD, de Jong SE, Prinssen M, et al. Two‐year outcomes after conventional or endovascular repair of abdominal aortic aneurysms. N Engl J Med. 2005;352(23):2398-405. PMid:15944424. 9. Lederle FA, Freischlag JA, Kyriakides TC, et al. Long‐term comparison of endovascular and open repair of abdominal aortic aneurysm. N Engl J Med. 2012;367(21):1988-97. PMid:23171095. 10. Badger S, Bedenis R, Blair PH, Ellis P, Kee F, Harkin WD. Endovascular treatment for ruptured abdominal aortic aneurysm. Cochrane Database Syst Rev. 2014;7(7):CD005261. PMid:25042123. 11. Antoniou GA, Ahmed A, Georgiadis GS, Torella F. Is endovascular repair of ruptured abdominal aortic aneurysms associated with improved in-hospital mortality compared with surgical repair? Interact Cardiovasc Thorac Surg. 2015;20(1):135-9. PMid:25281705. Author contributions Author contributions Conception and design: RAS Analysis and interpretation: RAS, MVMC, LMSJ, PWSF Data collection: RAS, DAPN, CFC, NAC, RS Writing the article: RAS Critical revision of the article: RAS, MVMC, LMSJ, DAPN, RS, CFC, NAC Final approval of the article*: RAS, MVMC, LMSJ, DAPN, RS, CFC, NAC Statistical analysis: RAS Overall responsibility: RAS *All authors have read and approved of the final version of the article submitted to J Vasc Bras. Author contributions Conception and design: RAS Analysis and interpretation: RAS, MVMC, LMSJ, PWSF Data collection: RAS, DAPN, CFC, NAC, RS Writing the article: RAS Critical revision of the article: RAS, MVMC, LMSJ, DAPN, RS, CFC, NAC Final approval of the article*: RAS, MVMC, LMSJ, DAPN, RS, CFC, NAC Statistical analysis: RAS Overall responsibility: RAS *All authors have read and approved of the final version of the article submitted to J Vasc Bras. 12. Francis N, Dort J, Cho E, et al. SAGES and EAES recommendations for minimally invasive surgery during COVID-19 pandemic. Surg Endosc. 2020;34(6):2327-31. PMid:32323016. 13. Vigneswaran Y, Prachand VN, Posner MC, Matthews JB, Hussain M. What is the appropriate use of laparoscopy over open procedures in the current COVID-19 climate? J Gastrointest Surg. 2020;24(7):1686. PMid:32285338. Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 Soares et al. J Vasc Bras. 2021;20:e20200173. https://doi.org/10.1590/1677-5449.200173 7/7
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The significance of resilience in mental health promotion of marriage immigrant women: A qualitative study of factors and processes
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Yeonjae Jo  (  wscho@dau.ac.kr ) Yeonjae Jo  (  wscho@dau.ac.kr ) The significance of resilience in mental health promotion of marriage immigrant women: A qualitative study of factors and processes Yeonjae Jo  (  wscho@dau.ac.kr ) Research article Keywords: marriage immigrant women; women’s health; mental health; access to service; resilience theory; qualitative research Posted Date: April 14th, 2020 DOI: https://doi.org/10.21203/rs.2.13818/v4 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Posted Date: April 14th, 2020 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at BMC Women's Health on April 28th, 2020. See the published version at https://doi.org/10.1186/s12905-020-00945-3. Page 1/24 Abstract Background: This study explores a series of processes in which marriage immigrant women achieve positive mental health status after experiencing various marriage- and migrant-related difficulties through the framework of resilience theory. As marriage immigrant women face greater barriers to public health services than non-immigrant women, it is necessary to understand the related factors, process, and context to address these barriers and strengthen available assets. Methods: A qualitative case study design was used with the phenomenological approach. Eleven mental health promotion program managers and twelve marriage immigrant women from who experienced resilience were recruited from four public-funded multicultural community centers in Seoul and Gyeonggi- do, South Korea, between December 2015 and March 2016. Using data from in-depth semi-structured face-to-face interviews, the author applied theme analysis informed by the resilience theory in order to identify factors that affect resilience and its development process. Results: Findings indicated that the process of resilience follows enduring difficulties, collapse of stability, access to professional help, professional and social support, and experience of growth. A combination of the staged process of growth, absence of partner support, children as a driving force for change, the need for economic activity, factors affecting difference in growth: satisfaction levels of women’s need for recognition, respect, and reward, and level of spousal support were identified as factors affecting marriage immigrant women’s resilience. Conclusions: Spouses, children, and economic activity play key roles in resilience in positive and negative ways. The existing information barrier should be addressed at a structural level to improve the mental health of marriage immigrant women, and the optimum time for intervention is suggested within two years post-migration. Efforts to build supportive relationships with Korean spouses and meet the women’s needs for recognition, respect, and reward may also help promote these women’s resilience. Background As a result of the Asian economic crisis, female marriage migration has increased from Southeast Asia to South Korea. There has been an increase in marriages of immigrant women over the last few decades; in 2005, the number of marriages between South Korean men and foreign women accounted for 9.8% of the total marriages in the country (314,304) [1]. The cumulative number of marriage immigrant women reached 274,282 in 2018 [1]. Research on marriage immigrant women tends to focus on their vulnerabilities to stressors, mental distress, physical abuse, and social isolation [2-5]. Most of these women immigrate to a foreign country in their early 20s and 30s; thus, they face challenges associated with immigrant adjustment, including adjusting to a new marriage, pregnancy, childbirth, and employment [6, 7]. Marriage immigrant women need social support for settling in South Korean society [8] and have a direct and indirect influence on family and social health. Often marriage immigrants find themselves isolated in their new country Page 2/24 without the support networks they are used to having in their country of origin or proficiency in the Korean language. The inability to speak or read the language of the new country has a significant negative effect on the social integration of female migrants [9]. This places married women in a position of dependence on their South Korean spouses, reducing their autonomy. There are a number of studies on the mental health problems these women face due to changes in the living environment, lifestyle, and cultural adaptation stress, such as depression and anxiety [10, 11]. Studies have repeatedly expressed that female migrants tend to experience more cultural adaptation stress and depression [12-14]. Gender differences in the psychological adaptation of migrants tend to be more pronounced when the differences in gender role expectations between the two cultures are greater, especially in the more stratified societies. Women find greater difficulty adapting and are more likely to have psychological symptoms such as depression, as compared to men [15-17]. In response to the increasing number and the integration needs of marriage immigrants, the Korean Government has adopted social welfare policies to facilitate their adjustment based on the rationale that they have provided a segment of Korean men with the opportunity to continue their family line [18]. Participants Eleven mental health promotion program managers with different professional specialties were selected from four public-funded multicultural community centers in Seoul and Gyeonggi-do, South Korea. These programs were sponsored by The Ministry of Health and Welfare and Ministry of Gender Equality and Family that aimed to support for early adaptation and stable settlement of marriage immigrant women and their families. Twelve marriage immigrant women who had indicated to program manages that they were happy to participate and who were able to be contacted by the researcher were invited to participate in the face-to-face interview, and all were interviewed. Background To understand the difficulties experienced in the specific context of immigrant women's marriage and how immigrants' inner resources and external protective factors promote mental health throughout the resilience process, in-depth, qualitative research is required. environment that can empower them to gain control over their life effectively [29]. Furthermore, resilience theory considers a person an active rather than a passive subject [20]. To understand the difficulties experienced in the specific context of immigrant women's marriage and how immigrants' inner resources and external protective factors promote mental health throughout the resilience process, in-depth, qualitative research is required. The resilience of marriage immigrant women has received little attention in political and research agendas. This study adds to the existing literature with a new approach focused on the analysis of resilience protective factors, their context, and the resilience process of marriage immigrant women. As such, qualitative research was used to examine the experiences of marriage immigrant women, analyzing several categories of factors that may promote or harm resilience, driving forces of change, and key influencers on growth and ability to thrive. In this context, the purpose of this study is to examine the process of resilience in the mental health of marriage immigrant women and its influencing factors. The results may then provide a basis for complementing and improving existing mental health promotion policies, services, and new public health strategies. Background For example, the Korean National Health Insurance Program covers marriage immigrants who hold a valid spouse visa, providing financial assistance or waiving the health insurance premiums when they give birth [19]. The Ministry of Health and Welfare and Ministry of Gender Equality and Family sponsor 218 public multicultural community centers that provide Korean language education programs, psychological counseling, and art therapies to support immigrants’ adjustment in Korea. However, due to lack of funds and limited capacity, these centers have less accessibility, and the number of counseling sessions is limited to 10 or fewer. Furthermore, they focus primarily on education rather than intervening in individual cases [20]. Building healthy public policy, creating supportive environments, strengthening community actions, developing personal skills, reorienting health services, and caring holism and ecology were identified as priority action areas of health promotion in the First International Conference on Health Promotion in Ottawa, Canada [21]. The mental health of marriage immigrant women should be viewed in relation to the internal resources and external support for the individual, given the holistic and ecological perspective that has been emphasized in the Ottawa Charter [21]. In addition, it is necessary to study not only the negative but also positive factors influencing mental health and the process of recovery and growth from mental health problems [22]. Lately, as more studies have been conducted with people recovering or growing from negative life events or difficulties [23-26], there is increasing interest in resilience theory to explain these processes and results. The concept of resilience can be defined as the process and consequences of working protective factors that enable positive adaptation, recovery, and growth from difficulties [27]. Several researchers have used quantitative research methods to identify protective factors regarding resilience [28-30]; however, the development process of resilience and its context are not identified in these studies. Additionally, existing studies of immigrant women show a lack of application of resilience theory. Unlike traditional medical models that focus on weaknesses, deficiencies, and pathogenic factors, resilience theory focuses on possibility, assets, strength, and supportive aspects of individuals’ Page 3/24 Page 3/24 environment that can empower them to gain control over their life effectively [29]. Furthermore, resilience theory considers a person an active rather than a passive subject [20]. Design and data collection techniques This is a qualitative case study focusing on a phenomenological approach. By allowing immigrant women the opportunity to describe their experiences and the meanings they attribute to them, the researcher can capture the diversity and complexity of their perceptions of the resilience process and the related factors. As Lahtinen et al. (1999) suggest, key concepts needed in the planning, evaluation, and monitoring of mental health promotion and prevention programs/policies were considered to evaluate the contents and quality of the current mental health promotion programs for marriage immigrant women. Critical case selection was made considering comprehensive factors such as individual, family, social, and cultural factors to ensure the quality of mental health promotion programs for marriage immigrant women [31]. Page 4/24 Page 4/24 Page 4/24 Data were collected from two groups, women and program managers. Two programs were decisively chosen, and additional cases were secured through a snowballing method using the institutions as a focal point. The selection criteria of the program manager included having worked with migrants for more than one year, currently working, voluntary participation, and work as a mental health promotion program manager. The selection criteria of marriage immigrant women included having experienced participating in a mental health promotion program for more than one year, recommended by program manager as recovered or resilient, voluntary participation, and willing to talk/share about their experience. Program managers and marriage immigrant women who did not meet the selection criteria were excluded. Each program manager was selected first and then recommended immigrant women for participation. Immigrant women meeting the selection criteria were contacted by their program manager, informed about the study, and asked to consider participating. Immigrant informants willing to volunteer were identified and recruited through program managers first. Then the researcher contacted them via telephone, re-informed them about the study and their rights, and confirmed their voluntary participation. A suitable time and place for the interview was then arranged. The final sample size was determined by data saturation, which was verified when no new data relevant to the study were found. In-depth, semi-structured face-to-face interviews were conducted by the author, a native Korean speaker, between December 2015 and March 2016 using standardized protocol. The research questions were as follows: How can marriage immigrant women attain resilience and sustain it? What factors influence marriage immigrant women’s resilience, and how do they do so? Design and data collection techniques Immigrant participants were asked about the difficulties they faced in South Korea as marriage immigrant women, factors that improve life in the country, and their experience of mental health promotion programs there to explore the context of their lives and their processes of resilience. Program manager informants were asked about the difficulties marriage immigrant women face in South Korea, factors that improve or harm their life in the country, and the manager’s experience of mental health promotion programs with immigrant women for triangulation. Field notes were made throughout the interviews. The interview questions were developed in discussion with qualitative research experts and based on results from literature reviews of resilience theory and mental health program evaluations [20]. The interview questions were pilot tested. Furthermore, sociodemographic information of participants was gathered in order to characterize them. Interviews lasted 60 ~ 90 minutes, were recorded in mp3, and were transcribed by the author within two days. With regards to credibility, recording. and transcribing the interviews helped ensure the quality of the data [32]. To enhance the transparency and transferability, all stages of data collection and analysis were described. The marriage immigrant participants were able to communicate sufficiently in the Korean language to be understood. Interview participants had the opportunity to request an interpreter, but none did. Data analysis Resilience is the result of individuals being able to interact with their environments and the processes that either promote well-being or protect them against the overwhelming influence of risk factors [33]. Page 5/24 Difficulties are a prerequisite for resilience, and positive adaptation, recovery, and growth are the outcome indicators. Modern definitions at the individual, family, neighborhood, and community levels can extend interest from factors that support or hinder the resilience process at the individual level to the critical role of the environment surrounding the individual, including services [34]. According to this theoretical framework, the resilience of immigrant women can be explained by various factors such as social policy, neighborhood and social context, family, and personal development level. This framework provides an analytic lens that enables the researcher to critically examine these informants’ narratives and identify the factors that influence marriage immigrant women’s resilience and its process when facing difficulties focusing on assets, strength, and supportive aspects of individuals’ environment. With a resilience theory framework as a lens, the author read and reread the transcripts to gain familiarity with the data. An initial reading of data identified critical text fragments and meaning before a thematic content analysis was conducted. Four thousand, seven hundred seventy-nine codes were initially established on the objective of the study. This allowed the generation of mixed categories, a theme analysis to find core categories, a comparison of categories and concepts, and the identification of similarities and differences between cases. Thereafter, open coding and axial coding were conducted. Based on the 4,779 codes, similar statements were grouped and were finally compressed into 236 codes. By comparing and contrasting the codes across the cases, the author developed them into higher-order categories and presented them to other qualitative research experts. Analysis was conducted through discussions and continuously referring to the data. Through the categorization process, which compared and contrasted the relevance of the generated codes, the author derived 21 subcategories, which were further compressed into 13 categories. In these 13 categories, five common themes were derived by structuring common attributes. Research Ethics This study received the final approval (IRB No. 1503 / 002-004) of the Institutional Committee of Research Ethics of Seoul National University in February 2015. All study procedures involving human participants were in accordance with the ethical standards of the institutional committee and the 1964 Helsinki Declaration and its later amendments or comparable ethical standards. The researcher did not attempt any intervention concerning the experience of the research participants. There was no pressure by the researcher nor the program manager for the immigrant women to participate in this study. Written information about the goals of the study, the interview procedure, informant’s rights, and ethical considerations were issued to the women. Participation was voluntary and written informed consent was given by every participant, which guaranteed the informants’ rights, confidentiality, and anonymity. This manuscript was prepared in accordance with the COREQ standards for qualitative research reports. Results Twenty-three participants, including 12 marriage immigrant women and 11 program managers, were interviewed. Table 1 describes the background characteristics of the participants who were interviewed. Page 6/24 Twelve immigrant women were aged between 25 and 47 years (mean 35.8 years) and had lived in South Korea between 5 and 19 years (mean 12.5 years). Five immigrant women had just one child, while the other seven had two or three children. Eleven program managers were aged between 30 and 53 years (mean 39.6 years) with professional specialties in counseling or art therapy. They had been working with immigrant women between 2 and 25 years (mean 10.3 years). From the analysis of the interviews, five themes emerged to represent marriage immigrant women’s process of resilience, its related factors, and their growth and ability to thrive (Figure 1). This is described in more detail in Table 2. The discourse extracts in the text are labeled to indicate the source of the data (MIG: Marriage immigrant woman, number, and the number of years in Korea; PRO: Program manager, number, and the number of years spent by the information provided in their profession). Theme 1. Staged process of growth Five categories of ‘enduring difficulties,’ ‘collapse of stability,’ ‘access to professional help,’ ‘professional and social support,’ ‘experience of growth’ are the order of the resilience process under ‘Staged process of growth’ theme. (1) Enduring difficulties Differences in culture and difficulties in communication were found to be key factors influencing informants’ mental health. Cultural differences mostly included eating habits, ways of managing living spaces, parenting styles, and clothing, which led to family conflicts. "Mom in-laws say men are king and sky. Women are as low as the land. It’s so unjust and strange" (Marriage immigrant woman [Mig3, 11y]). "Mom in-laws say men are king and sky. Women are as low as the land. It’s so unjust and strange" (Marriage immigrant woman [Mig3, 11y]). “My husband does not prepare my baby’s meal. He doesn’t even feed her. Moreover, he said there is nothing wrong with him. He thinks he is a good father.” (Mig10, 9y). “It is so hard. We (my husband and I) fight almost three times a month. I am so sick of him screaming and yelling at the children” (Mig3, 11y). Participants reported that neither the marriage immigrant women nor their Korean family members felt their own culture was respected. Since their Korean language level was low, this often led to communication problems and confusion. "I could only understand one word, so I had to guess. It's hard to guess. Conflicts kept happening” (Mig8, 8y). 8y). The participants, including both immigrant women and program managers, indicated that many immigrant wives are forced to speak only in Korean and to follow Korean culture, and this made them feel Page 7/24 The participants, including both immigrant women and program managers, indicated that many immigrant wives are forced to speak only in Korean and to follow Korean culture, and this made them feel Page 7/24 Page 7/24 neglected and discriminated against. "Korean family members say these women are from savage and poor countries. They look down on them” (Program manager [Pro8, 4y]). "Korean family members say these women are from savage and poor countries. They look down on them” (Program manager [Pro8, 4y]). As migrants without full citizenship, until they have acquired the necessary language and cultural skills, as well as legal status in their own right, these women have to rely on their husbands to make applications for change in status, fill in forms, or otherwise deal with authority. Lack of a common language restricts communication between husband and wife and increases the isolation of immigrant wives. (1) Enduring difficulties Husbands may not want their wives to meet and socialize with their ethnic community members, as they are concerned to ensure that the wife learns to become an acceptable wife for the Korean family. Korean men’s unrealistic expectations of their immigrant wives’ behavior often cause conflict in marriage and lead to abusive domestic violence. “I was not allowed to go out for the first one to two years in Korea. My husband and mom-in-law were worried that I would run away if I go out” (Mig3, 11y). “There were husbands saying that they bought a bride for child, child bearing, descendants…and these men treat the wives bad and often neglect them” (Pro8, 4y). “There were husbands saying that they bought a bride for child, child bearing, descendants…and these men treat the wives bad and often neglect them” (Pro8, 4y). Economic difficulties were also noted as a major negative factor in the mental health of the marriage immigrant women. Most of the spouses mentioned had a low income, and many were unemployed. As a result, immigrant women could not support their home country’s family financially and suffered from an economic burden with their Korean family. "My parents think, ‘My daughter is internationally married. She will pay me.’ So, I have to send money. It is always difficult” (Mig8, 8y). (2) Collapse of stability Most immigrant participants reported mental health problems, including emotional difficulties, stress, anxiety, and depression. Several immigrant informants said they had struggled with suicidal ideation during their first or second year in South Korea. “I was stressed out, and I wanted to die. I really did not want to live anymore” (Mig10, 9y). “I was stressed out, and I wanted to die. I really did not want to live anymore” (Mig10, 9y). “I was stressed out, and I wanted to die. I really did not want to live anymore” (Mig10, 9y). Migration reduces the capacity of individuals to act independently and increases the vulnerability of women until they have legitimate status in their own right as well as cultural and language skills. Immigrant women commonly addressed that the first one to two years was the hardest time to adjust in the new country. “The first two years in Korea was the toughest time in my life. I tried so hard to learn the Korean language to communicate with my husband, but he did not trust me and locked me at home” (Mig8, 8y). Page 8/24 “It was so hard after arriving in Korea. It was hard enough that I could die. I was so depressed and could not see any future ahead of me. For about one year, it was so tough to adjust” (Mig10, 9y). Program manager informants also addressed that immigrant women struggle hard, especially in the first one to two years in South Korea. “The first two years are the hardest time. They have to learn Korean and adjust to a new life. Complaints build up and suddenly explode. Then they run away or want a divorce” (Pro2, 15y). Though their initial threshold for problems might be high, due to lower levels of social support, family conflict, traumatic events like domestic violence, and greater social isolation, stress had built up until the marriage immigrant women’s mental stability collapsed. Several immigrant women explained that their self-esteem had gotten progressively lower, and they could not manage their sudden and extreme tempers. “I felt incompetent all day long. There was nothing I could do, so I got sick and upset. My complaints festered and exploded” (Mig1, 5y). (3) Access to professional help (3) Access to professional help Access to professional services in a new country was challenging for immigrants. The marriage immigrant women came from countries with no public counseling system and were used to experiencing stigma towards mental health problems. Thus, they did not know what to do or where to get help when suffering from severe mental health problems. Most participants who had experienced a mental health problem utilized informative support from other immigrant friends, not from their Korean family. “I have a married immigrant friend, and she has a lot of information. She told me about the program” (Mig4, 15y). “I have a married immigrant friend, and she has a lot of information. She told me about the program” (Mig4, 15y). These friends could explain the benefits of professional intervention and help them navigate the services. One immigrant woman explained that she could get professional assistance from police while arranging services for a domestic violence victim: “I didn’t know that there is a shelter for women. He kept hitting me, and I didn’t have a place to hide from him. I called the police for the first time. Then the counselor came along with the police” (Mig3, 11y). The marriage immigrant women preferred in-center programs, while they stated their Korean family preferred home-visit programs, ostensibly to prevent them from “running away.” When a professional service was available, marriage immigrant women had the option of getting help if necessary. “At first, I was very angry, and I said ‘I’m going back to Vietnam, I’m going to divorce.’ But when I was pregnant, I began to think about how I should survive. So I thought I should get help and learn to live” (Mig8, 8y). Page 9/24 However, not all women made use of these services. Women with children were found to be more likely to use the services than women without children. However, not all women made use of these services. Women with children were found to be more likely to use the services than women without children. (4) Professional and social support Marriage immigrant women felt frustrated when they were not recognized, rewarded, or respected by their Korean families. Social and emotional support from professional services met those needs restored emotional stability and self-esteem. “[The program] has changed my life. It was helpful that someone listened to me and treated me with respect. I felt relaxed” (Mig3, 11y). “[The program] has changed my life. It was helpful that someone listened to me and treated me with respect. I felt relaxed” (Mig3, 11y). Professional help included counseling, couple counseling, music therapy, art therapy, self-help group activities, and community service activities. Counselors and therapists gave advice, therapy, useful information, full attention, listened to their stories, and empathized with them. Through self-help group activities and volunteer activities, new support systems were formed. Marriage immigrant women also learned healthy communication skills to express their thoughts and feelings appropriately. “I used to think of myself as alone and didn’t talk. I came to the center with my friend. I did not know about the center or how to These friends included neighbors and people from Social Networking Service (SNS) like Facebook, parent meetings, or religious centers. These friends included neighbors and people from Social Networking Service (SNS) like Facebook, parent meetings, or religious centers. “I have a married immigrant friend, and she has a lot of information. She told me about the program” (Mig4, 15y). Now I say what I think, and my husband says, “Thank you very much for your words.” [Things are] very good with my husband now” (Mig11, 5y). “I used to think of myself as alone and didn’t talk. Now I say what I think, and my husband says, “Thank you very much for your words.” [Things are] very good with my husband now” (Mig11, 5y). (5) Experience of growth articipants explained that professional help reinforced marriage immigrant “Really passive women became leaders full of confidence. I was really surprised” (Pro10, 4y) and helped them resolve family conflicts through healthy communication. In addition, as they understood and sympathized more with the differences of their counterparts, they were better able to understand the position of the Korean family: and helped them resolve family conflicts through healthy communication. In addition, as they understood and sympathized more with the differences of their counterparts, they were better able to understand the position of the Korean family: “I understood my husband while counseling. At first, I only voiced my opinions. However, I realized how frustrating it was for my husband. Now that we understand each other, things have changed a lot” (Mig8, 8y). 8y) 8y). Rapport with professional staff and self-help group members created secure support networks and gave the immigrant women strength to work through difficulties. They saw themselves as “grown from the past.” Furthermore, as they experienced growth through the programs: Rapport with professional staff and self-help group members created secure support networks and gave the immigrant women strength to work through difficulties. They saw themselves as “grown from the past.” Furthermore, as they experienced growth through the programs: er knew what I was capable of, and now I think I’m starting to fly” (Mig4, 15y) “I never knew what I was capable of, and now I think I’m starting to fly” (Mig4, 15y). , they made efforts to strengthen their internal reward systems continuously. In particular, they enjoyed the praise and recognition that come from volunteer activities. , they made efforts to strengthen their internal reward systems continuously. In particular, they enjoyed the praise and recognition that come from volunteer activities. Page 10/24 Theme 2. Absence of partner support Page 10/24 Few of the immigrant women in this study got the help they needed from their spouses. “My husband is the closest person to me, but only physically. We have many conflicts. Theme 3. Children as the driving force for change All participants mentioned the importance of childcare, and a decision to get help was often made as a result of childcare responsibilities. “After I gave birth, I believed I needed to change for my child. I had to try” (Mig6, 15y). “I have a married immigrant friend, and she has a lot of information. She told me about the program” (Mig4, 15y). I can’t communicate with him. It is so hard” (Mig8, 8y). As they were financially dependent on their husbands, this left them with less control over their lives and mental health. As they were financially dependent on their husbands, this left them with less control over their lives and mental health. “The economic power is almost always with their husband or their parents-in-law. Because these immigrant women don’t have pocket money, they can’t live their own life at all. That is why they struggle to get a part-time job” (Pro50, 8y). “The economic power is almost always with their husband or their parents-in-law. Because these immigrant women don’t have pocket money, they can’t live their own life at all. That is why they struggle to get a part-time job” (Pro50, 8y). Thus, friends were important to participants in two ways. Firstly, they were able to recognize collapses in stability in these married women. Secondly, they informed professional services and helped the participant access these services if necessary. Thus, friends were important to participants in two ways. Firstly, they were able to recognize collapses in stability in these married women. Secondly, they informed professional services and helped the participant access these services if necessary. “I came to the center with my friend. I did not know about the center or how to get there” (Mig8, 8y). “I came to the center with my friend. I did not know about the center or how to get there” (Mig8, 8y). “I came to the center with my friend. I did not know about the center or how to get there” (Mig8, 8y). “After I gave birth, I believed I needed to change for my child. I had to try” (M After getting pregnant or giving birth, the married women reconstructed their foci to their child and changed their attitudes and strategies towards difficulties from passive to active. “It was so hard that I wanted to die. I thought a lot about killing myself, but I became a mother. I had to raise my child somehow! I had to be strong” (Mig8, 8y). In addition, a child gave them a sense of security and stability as it guaranteed they would be able to stay in South Korea indefinitely. Children also gave psychological comfort to the married women. “She [My child] takes care of me. I said to her, ‘it hurts,’ and she gently rubs her hand against my forehead. I felt relaxed” (Mig11, 5y). “She [My child] takes care of me. I said to her, ‘it hurts,’ and she gently rubs her hand against my forehead. I felt relaxed” (Mig11, 5y). The results showed that children could also cause the marriage immigrant women problems. These results were commonly addressed by program manager informants. In cases of disagreement among Korean family members regarding childcare, child maladaptation, and child discrimination, the women also suffer. Several program manager informants in the study mentioned that the child neglected and discriminated against immigrant women as the Koreans do. Page 11/24 Page 11/24 “The children ignore their mother like their grandma does. They learn this without knowing it, and they don’t respect their mother” (Pro8, 4y). Theme 4. The need for economic activity Economic activities, which are known to be protective factors in resilience theory [35], appeared to affect mental health in both positive and negative ways, related to the context in which married women had to work for a living. “There are few people who can afford to live. And there are a lot of people who are in debt, so they have to work” (Pro1, 25y). The marriage immigrant women felt a sense of duty to support families in their home country. One participant stated that The marriage immigrant women felt a sense of duty to support families in their home country. One participant stated that “The reason why immigrant women are forced to do economic activities is…to send money to their families in their home countries” (Pro6, 5y). However, they were financially insecure in South Korea and had to work to earn money to support their families in South Korea as well. There are also benefits from this economic activity, such as supporting one’s family financially, developing one’s career, and earning the respect of one’s Korean family: However, they were financially insecure in South Korea and had to work to earn money to support their families in South Korea as well. There are also benefits from this economic activity, such as supporting one’s family financially, developing one’s career, and earning the respect of one’s Korean family: “My life becomes energetic, and I find work that strengthens my talent, and my children get to respect me” (Mig7, 13y); however, this economic activity has a cost. The balance of work and household duties made them feel doubly burdened. however, this economic activity has a cost. The balance of work and household duties made them feel doubly burdened. "I was stressed a lot. Not stressed at work, but afterward. It was too hard for housekeeping" (Mig8, 8y). However, some women in the study were satisfied with their role in society and their financial independence within the family. Discussion In this study, the author aimed to identify the factors that influence marriage immigrant women’s resilience and its process when facing difficulties. In doing so, factors relating to seeking professional help were also identified. The findings indicated that the order of the resilience process follows: enduring difficulties, collapse of stability, access to professional help, professional and social support, and experience of growth. A combination of the staged process of growth, absence of partner support, children as a driving force for change, the need for economic activity, factors affecting difference in growth all affect marriage immigrant women’s resilience. Common difficulties that these women face are cultural differences and communication problems due to the lack of language proficiency. A previous study also reported that one of the main difficulties faced by immigrant women is language and communication [36]. It should be noted that often, marriage immigrant women are passive in seeking help for mental health problems, as described in a previous study [37]. As support from the home country family weakened while living in Korea, their vulnerability to mental health problems heightened. Thus, accessibility to professional help becomes extremely important in this context. In general, immigrants are evaluated as vulnerable due to a lack of access to health information compared to indigenous peoples [38]. Marriage immigrant women experience structural barriers when accessing professional services as a result of their position as immigrants in society [39]. The women lack information about public services and are often reliant on other immigrant women for information. These circumstances delay intervention and cause more complex mental health problems, forcing marriage immigrant women into a subordinate position with less control over their own lives. Migrants are often also unfamiliar with the overall system and language of the immigration country, so experience significant difficulty obtaining necessary health information [40]. It is imperative that access to professional services is improved to empower immigrant women. The main task of marriage immigrants is to overcome adversities in managing cross-cultural marriage and life in Korea in the first few post- migration years [19]. According to this study’s findings, this professional help should be available within two years of migration. This supports research from other countries that suggests intervention should not be delayed over three years [41]. Theme 5. Factors affecting difference in growth The level of growth or and ability to thrive varied among participants and appeared to be influenced by satisfaction levels of women’s needs for recognition, respect, and reward and support levels of the partner. By recognizing their value through various social activities, marriage immigrant women were able to express their feelings and thoughts with healthy communication and restore their self-esteem and confidence. The support of the husband made a difference in the degree of growth. Adequate support also sped up the time required for growth. If a spouse understood and supported the adaptation efforts of the immigrant women, positive marital relations were strengthened, and a high-level growth was achieved in a short time. Page 12/24 Page 12/24 "I wanted him to know my heart and not ignore it. If my husband gives me his heart, I can bear it. That the most important thing" (Mig3, 11y). The results also revealed that individuals' changes had a positive effect on family relationships and the community. "I have a desire to go out and help others through volunteer activities. It is worthwhile, and I feel good. I like to receive gratitude and praise” (Mig6, 15y). Discussion How and when marriage immigrant women receive service information, and professional help is essential since mental health problems can be easily resolved at an early stage [42, 6] As mentioned in Chang and Wallace’s work [19], effective integration programs in the first few post- migration years may identify at-risk transnational couples, and improve marriage migrants’ health. Page 13/24 Page 13/24 Translation and interpretation are significant parts to play in facilitating access to support and services, and accurate, high-quality services of translation and interpretation should be a crucial step in promoting services to the women [4]. By increasing awareness of available services, immigrants can achieve positive changes in their lives [43]. The use of lay health providers or assistants is essential to prepare this population for the empowerment process [44]. Meeting marriage immigrant women’s needs for recognition, respect, and reward, in the form of happiness, well-being, encouragement, and financial independence, and strengthening supportive spousal relationships are the key intervention strategies for improved resilience. Many of the participants in this study find a supportive relationship with counselors and therapists where they can discuss their concerns, thoughts, and feelings and are encouraged to learn communication skills. The national hotline and counseling services carrying out in the client’s native language to ensure that the woman feels able to express herself as she wishes, are recommended [4]. However, although this type of intervention is sufficient, the role of the partner is a lot bigger in resilience. The degree of respect, acceptance, and attention received from others who are considered to be meaningful has the most significant impact on the development of self-esteem [45]. Since their Korean spouses are usually the most important and meaningful people to marriage immigrant women, being recognized, respected, and rewarded by the spouse and building a strong supportive relationship with them decreases the resilience process time and leads the women to a high level of growth. If women feel marginalized and stigmatized, supporting their integration and protecting them from risk factors of mental health will be very challenging, so professionals may need to work with the Korean families as well as with the wives themselves [4]. The utilizing bilingual healthcare providers or assistants having same country of origin with the women in the multicultural centers would be useful to provide culturally sensitive and intimate care, patient education, and friendship for immigrant women [46]. Discussion Personality traits and psychological resources have been the main emphasis in existing resilience research [57-61]; however, the results of this study show that the protective factors of resources at the family and community level are more influential on resilience than individual resources concerning the mental health of marriage immigrant women. Another noteworthy finding is that economic activity plays positive and negative roles in the mental health of these immigrant women as it is both a means of solving financial difficulties and a stressor that makes it challenging to balance work and family life. The resilience factor, therefore, needs to be interpreted in a way that reflects this cultural and social context [62], and economic activities should be supported structurally for the independence and autonomy of these women. Opinions of scholars vary on whether to view positive results after difficulty as a recovery to the previous state or an improved state [63]. The discoveries of this study suggest that for marriage immigrant women, resilience results should be regarded as growth beyond recovery to the stable state, in that they overcame difficulties and then achieved further internal growth through various protective factors, such as strengthening their support system. In this process, their attitudes, thoughts, coping styles, and communication styles changed positively. These positive changes correspond to areas of growth that include appreciation of life, intimacy of relationships, and personal strengths [64, 31]. To sustain and strengthen growth in resilience in marriage immigrant women, interventions should be considered for individuals, which include woman, her spouse, and family members, to undertake meaningful activities in a supportive and collaborative environment in the community [65]. In turn, the positive results of resilience may then spread through the community. One limitation of this qualitative research could be that marriage immigrant women who participated in the in-depth interviews may have more resources at their disposal than other marriage immigrant women in that they had already experienced positive resilience results. However, as the purpose of this study was to analyze marriage immigrant women who experienced positive results of resilience, and to identify resilience factors, processes, and its context, it is not necessary to consider the possibility of selective bias against the study results. Further studies should address the resilience of the mental health of marriage immigrant women who have few protective factors in the early stages of migration. Discussion As such, partner intervention regarding fostering a positive marital relationship and its fees should be addressed at the system level. Moreover, family educational programs should be provided to promote egalitarian spousal relationships and prevent domestic violence [45]. Since 2006, over 200 multicultural centers have been established countrywide in Korea to provide services to marriage immigrant women [47]. These centers have become significant places for immigrant women to meet and make friends, access to services for integration, find a source of support for the women and their families, start occupational training and language learning, and cross-cultural communication [4]. A previous study addressed the importance of social health buffering marital distress and acculturative stress of immigrants by enhancing cohesion and decreasing family conflict [48]. Hence supporting the self-help groups of immigrant wives can have a significant role to break the isolation of these women in the local communities by programs or services working to give women some support and security [49-52]. In addition to obtaining social support, regular social engagement outside the family may also prevent immigrant women from integration-related maltreatment from husbands or in-laws [19]. A recent survey presented that more than half of marriage immigrant women’s social participation appeared only within co-ethnic contacts, with a weak connection with Koreans [53]. Given the decisive role of cross-group relationships with majorities in minority’s well-being [54], community efforts to Page 14/24 Page 14/24 increase opportunities for marriage immigrant women to interact with Koreans will benefit their resilience. Government institutions can have a considerable effect on how vulnerable immigrant women are as wives in a different country, and the long-term goal of agencies should be to change legislation to provide women more secure status in a new country from the moment they become part of a permanent partnership with a citizen [4]. This is the first study, to the author’s knowledge, that found that the children can be the driving force in tackling the difficulties of marriage immigrant women. Psychological resources, such as child-care responsibility and the tight bond with a child, play a role as catalysts for improvements to immigrants' mental health and buffers to mediate stressors [55]. These results confirm that the needs for a relationship plays a vital role in promoting intrinsic motivation [56]. Discussion Another limitation of this research is that the fieldwork was conducted three to four years ago; there has now been a policy change in South Korea that basic Korean proficiency is required for marriage immigration. Since Page 15/24 Page 15/24 Page 15/24 this policy change may affect immigrant women’s resilience process, further study should be addressed to identify the effect of language proficiency in resilience. Further research should explore how gender, women’s social position, power, cultural beliefs and values, social and institutional ideologies intersect to influence marriage immigrant women’s resilience, mental health, and quality of life. The author from South Korea having different cultural backgrounds to immigrant women and having the role of a researcher may have been considered an outsider to the immigrant women. Nevertheless, with their trust in program managers who introduced the author to them and their willingness to participate in delivering their voice to change the society/policy, the informants may have been comfortable in discussing topics related to their lived experience in South Korea. Findings are dependent on the subjective interpretations of the researcher. Although the author had responsibility for data collection and analysis, the data was discussed with the other qualitative research experts in migration and health study to enable to explore different perspectives and contribute to the credibility of the findings [66]. Conclusions This study aimed to show how marriage immigrant women become resilient when facing a number of difficulties and what the key influential factors to resilience are. The contextual factors that influence immigrant women’s coping strategies for mental health problems were highlighted. Several key factors that play positive and negative roles in resilience were identified at individual, social, cultural, and structural levels. While these related factors are in line with previous research with other immigrant women, this detailed analysis adds insights into how these factors influence its growth process. Before stability collapses, it is important for marriage immigrant women to access professional services within two years of migration. Building a supportive relationship with their Korean spouses and meeting their needs are key strategies for intervention to these women, while information barriers should be addressed at a structural level in order to improve the mental health of these women. Consent for publication Not applicable. Availability of data and material Ethics approval and consent to participate Ethical approval was obtained from the Institutional Review Board of Seoul National University (IRB No 1503 / 002-004). All informants gave written consent to participate. Declarations Ethics approval and consent to participate Acknowledgments The author would like to thank all the informants for their willingness and openness to share their time, stories, and experience. PRO: Program manager SNS: Social Networking Service Authors’ contributions YJ designed the study, conducted the interviews, analyzed and interpreted the data, and drafted the manuscript. Authors’ information (optional) The author, Yeonjae Jo, RN. MPH. Ph.D., is an assistant professor at the Dong-A University of Busan, South Korea, faculty of Nursing. The author has a Ph.D. in public health and an interest in immigrant mental health and use of health care services, and promotion of healthy lifestyle. She teaches a qualitative research course and is an active researcher of qualitative study. Abbreviations MIG: Marriage immigrant woman Funding Not applicable. Authors’ contributions Authors’ contributions Availability of data and material The datasets generated during the current study are not publicly available due to the sensitive and personal nature of the information contained in the data. Data may be available from the current authors, with restrictions and following ethical approval. Page 16/24 Competing interests The author declares that there are no competing interests. References 1. Korean Statistical Office: Korean Statistical Information Service. http://kosis.kr/statisticsList/statisticsListIndex.do? menuId=M_01_01&vwcd=MT_ZTITLE&parmTabId=M_01_01#SelectStatsBoxDiv (2019). Accessed 20 Dec 2019. 1. Korean Statistical Office: Korean Statistical Information Service. http://kosis.kr/statisticsList/statisticsListIndex.do? menuId=M_01_01&vwcd=MT_ZTITLE&parmTabId=M_01_01#SelectStatsBoxDiv (2019). Accessed 20 Dec 2019. http://kosis.kr/statisticsList/statisticsListIndex.do? menuId=M_01_01&vwcd=MT_ZTITLE&parmTabId=M_01_01#SelectStatsBoxDiv (2019). Accessed 20 Dec 2019. 2. Choi SY, Cheung YW, Cheung AK. Social isolation and spousal violence: Comparing female marriage migrants with local women. J Marriage Fam. 2012; 74(3): 444-61. 3. Choi SY, Kim EJ, Ryu E, Chang KO, Park MN. Postpartum depression and parental self-efficacy: A comparison of native Korean and Vietnamese immigrant mothers in Korea. J Transcult Nurs. 2012;23(2):181-7. Page 17/24 Page 17/24 4. Williams L, Yu MK. Domestic violence in cross-border marriage-A case study from Taiwan. Int J Migr Health Soc Care. 2006;2(3/4):58-69. 5. Erez E, Adelman M, Gregory C. Intersections of immigration and domestic violence: Voices of battered immigrant women. Fem Criminol. 2009;4(1):32-56. 6. Ahn JA, Kim T, Roh EH, Song JE. Health of international marriage immigrant women in South Korea: a systematic review. J Immigr Minor Health. 2018; 20(3):717-28. 6. Ahn JA, Kim T, Roh EH, Song JE. Health of international marriage immigrant women in South Korea: a systematic review. J Immigr Minor Health. 2018; 20(3):717-28. 7. Panuncio RL, Bae J. The adjusting process of foreign wives married to Korean husbands. J Korean Acad Psychiatr Ment Health Nurs. 2012;21(1):55-66. 7. Panuncio RL, Bae J. The adjusting process of foreign wives married to Korean husbands. J Korean Acad Psychiatr Ment Health Nurs. 2012;21(1):55-66. 8. Okkyung Y, Yeonsoo K. A study on the effects of depressiveness among foreign wives through marriage migration. Chongsin Pogon Kwa Sahoe Saop. 2007;26:79-110. 8. Okkyung Y, Yeonsoo K. A study on the effects of depressiveness among foreign wives through marriage migration. Chongsin Pogon Kwa Sahoe Saop. 2007;26:79-110. 9. Pottie K, Ng E, Spitzer D, Mohammed A, Glazier R. Language proficiency, gender and self-reported health. Can J Public Health. 2008;99(6):505-10. 9. Pottie K, Ng E, Spitzer D, Mohammed A, Glazier R. Language proficiency, gender and self-reported health. Can J Public Health. 2008;99(6):505-10. 10. Demanarig DLL, Acosta J. Phenomenological look at the experiences of Filipina correspondence or internet brides. Sage Open. 2016;doi:10.1177/2158244016654949 10. Demanarig DLL, Acosta J. Phenomenological look at the experiences of Filipina correspondence or internet brides. Sage Open. 2016;doi:10.1177/2158244016654949 11. Sunmi C, Jeewon P, Heesun K. Relationships of acculturative stress, depression, and social support to health-related quality of life in Vietnamese immigrant women in South Korea. J Transcult Nurs. References 2014;doi: 1177/1043659613515714. 11. Sunmi C, Jeewon P, Heesun K. Relationships of acculturative stress, depression, and social support to health-related quality of life in Vietnamese immigrant women in South Korea. J Transcult Nurs. 2014;doi: 1177/1043659613515714. 12. Vega WA, Kolody B, Valle R, Hough R. Depressive symptoms and their correlates among immigrant Mexican women in the United States. Soc Sci Med. 1986;22(6):645-52. 13. de Snyder VNS, Cervantes RC, Padilla AM. Gender and ethnic differences in psychosocial stress and generalized distress among Hispanics. Sex Roles. 1990;22(7):441-53. 14. Hovey JD. Acculturative stress, depression, and suicidal ideation in Mexican immigrants. Cultur Divers Ethnic Minor Psychol. 2000;6(2):134-51. 14. Hovey JD. Acculturative stress, depression, and suicidal ideation in Mexican immigrants. Cultur Divers Ethnic Minor Psychol. 2000;6(2):134-51. 15. Berry JW. Immigration, acculturation, and adaptation. Appl Psychol. 1997;46(1):5-34. 15. Berry JW. Immigration, acculturation, and adaptation. Appl Psychol. 1997;46(1):5-34. 16. Zlobina A, Basabe N, Paez D, Furnham A. Sociocultural adjustment of immigrants: Universal and group-specific predictors. Int J Intercult Relat. 2006;30(2):195-211. 16. Zlobina A, Basabe N, Paez D, Furnham A. Sociocultural adjustment of immigrants: Universal and group-specific predictors. Int J Intercult Relat. 2006;30(2):195-211. 17. Sunghee O, Keehwan P. Factors affecting immigrant`s psychological health: A study of Korean immigrants in Australia. The Korean journal of social and personality psychology. 2007;21(4):55-69. 17. Sunghee O, Keehwan P. Factors affecting immigrant`s psychological health: A study of Korean immigrants in Australia. The Korean journal of social and personality psychology. 2007;21(4):55-69. 18. Lee YJ, Seol DH, Cho SN. International marriages in South Korea: The significance of nationality an ethnicity. J Popul Res (Canberra). 2006;23(2):165-82. 18. Lee YJ, Seol DH, Cho SN. International marriages in South Korea: The significance of nationality and ethnicity. J Popul Res (Canberra). 2006;23(2):165-82. 19. Chang HC, Wallace SP. Migration processes and self-rated health among marriage migrants in South Korea. Ethn Health. 2016;21(1):20-38. 19. Chang HC, Wallace SP. Migration processes and self-rated health among marriage migrants in Sout Korea. Ethn Health. 2016;21(1):20-38. 20. Wonsup C. The significance of resilience for mental health promotion on marriage immigrant women: focusing on factors and processes of resilience. http://dcollection.snu.ac.kr/public_resource/pdf/000000142454_20190804213759.pdf (2017). Accessed 01 Jul 2019. 20. Wonsup C. The significance of resilience for mental health promotion on marriage immigrant women: focusing on factors and processes of resilience. 21. World Health Organization. Ottawa charter for health promotion. World Health Organization; 1986. Page 18/24 Page 18/24 22. Fenta H, Hyman I, Noh S. References Determinants of depression among Ethiopian immigrants and refugees in Toronto. J Nerv Ment Dis. 2004;doi: 10.1097/01.nmd.0000126729.08179.07. 23. Rutter M. Resilience in the Face of Adversity: Protective Factors and Resistance to Psychiatric Disorder. Br J Psychiatry. 1985;doi:10.1192/bjp.147.6.598. 23. Rutter M. Resilience in the Face of Adversity: Protective Factors and Resistance to Psychiatric Disorder. Br J Psychiatry. 1985;doi:10.1192/bjp.147.6.598. 24. Garmezy N. Children in poverty: resilience despite risk. Psychiatry. 1993;doi:10.1080/00332747.1993.11024627. 25. Luthar SS, Cicchetti D, Becker B. The construct of resilience: a critical evaluation and guidelines for future work. Child Dev. 2003;doi:10.1111/1467-8624.00164. 25. Luthar SS, Cicchetti D, Becker B. The construct of resilience: a critical evaluation and guidelines for future work. Child Dev. 2003;doi:10.1111/1467-8624.00164. 26. Werner EE, Smith RS. Journeys from childhood to midlife: risk, resilience, and recovery. Cornell University Press: Ithaca and London; 2001. 26. Werner EE, Smith RS. Journeys from childhood to midlife: risk, resilience, and recovery. Cornell University Press: Ithaca and London; 2001. 27. Leipold B, Greve W. Resilience: a conceptual bridge between coping and development. Eur Psychol. 2009;doi:10.1027/1016-9040.14.1.40. 27. Leipold B, Greve W. Resilience: a conceptual bridge between coping and development. Eur Psychol. 2009;doi:10.1027/1016-9040.14.1.40. 28. Sookyoung J. The mediating effects of ego-resiliency on the relationship between child’s obesity stress and depression. Journal of Korean Home Management Association. 2008;26(5):155-63. 28. Sookyoung J. The mediating effects of ego-resiliency on the relationship between child’s obesity stress and depression. Journal of Korean Home Management Association. 2008;26(5):155-63. 29. Hyunsuk K, Heejae K, Songsik C. Acculturative stress and marital adjustment among marriage migration females: focusing on the mediating and moderating effects of ego-resilience. Korean Family Resource Management Association. 2010;14(2):153-76. 30. Sooan K, Kyunghwan M. Comparison of three resilience scales and relationship between resilience and emotional characteristics. Korean Journal of Social and Personality Psychology. 2011;25(2):223-43. 31. Lahtinen E, Lehtinen V, Riikonen E, Ahonen J. Framework for promoting mental health in Europe. National Research and Development Center for Welfare and Health Ministry of Social Affairs and Health. 1999. http://www.julkari.fi/bitstream/handle/10024/77555/Frameworkpromoting.pdf. Accessed 01 Jul 2015. 32. Graneheim UH, Lundman B. Qualitative content analysis in nursing research: concepts, procedures and measures to achieve trustworthiness. Nurse Educ Today. 2004;24(2):105-12. 32. Graneheim UH, Lundman B. Qualitative content analysis in nursing research: concepts, procedures and measures to achieve trustworthiness. Nurse Educ Today. 2004;24(2):105-12. 33. Zautra A, Hall J, Murray K. Community development and community resilience: An integrative approach. Community Dev (Columb). 2008;39(3):130-47. 34. Lal S, Ungar M, Malla A, Leggo C, Suto M. References Impact of mental health services on resilience in youth with first episode psychosis: A qualitative study. Adm Policy Ment Health. 2015;44(1):1-11. 34. Lal S, Ungar M, Malla A, Leggo C, Suto M. Impact of mental health services on resilience in youth with first episode psychosis: A qualitative study. Adm Policy Ment Health. 2015;44(1):1-11. 35. Masten AS. Resilience in developing systems: progress and promise as the fourth wave rises. Dev Psychopathol. 2007;19(3):921-30. 35. Masten AS. Resilience in developing systems: progress and promise as the fourth wave rises. Dev Psychopathol. 2007;19(3):921-30. 36. Yang YM, Wang HH. Life and health concerns of Indonesian women in transnational marriages in Taiwan. J Nurs Res. 2003;11(3):167-76. 36. Yang YM, Wang HH. Life and health concerns of Indonesian women in transnational marriages in Taiwan. J Nurs Res. 2003;11(3):167-76. 37. Kamperman AM, Komproe IH, deJong JTVM. Migrant mental health: a model for indicators of mental health and health care consumption. Health Psychol. 2007;doi:10.1037/0278-6133.26.1.96. 37. Kamperman AM, Komproe IH, deJong JTVM. Migrant mental health: a model for indicators of mental health and health care consumption. Health Psychol. 2007;doi:10.1037/0278-6133.26.1.96. Page 19/24 Page 19/24 38. Guendelman S, Schauffler H, Samuels S. Differential access and utilization of health services by immigrant and native-born children in working poor families in California. J Health Care Poor Underserved. 2002;13(1):12-23. 39. Higginbottom GM, Morgan M, O’Mahony J, Chiu Y, Kocay D, Alexandre M, Young M. Immigrant women’s experiences of postpartum depression in Canada: a protocol for systematic review using a narrative synthesis. Syst Rev. 2013;2(1):65. 40. Caidi N, Allard D, Quirke L. Information practices of immigrants. Annual Review of Information Science and Technology. 2010;44(1):491-531. 41. Thanh HM. A study on international marriages between Korea and Vietnam after 1992. Seoul National University; 2005. 41. Thanh HM. A study on international marriages between Korea and Vietnam after 1992. Seoul National University; 2005. 42. Straiton ML, Ledesma HML, Donnelly TT. “It has not occurred to me to see a doctor for that kind of feeling”: a qualitative study of Filipina immigrants’ perceptions of help seeking for mental health problems. BMC Womens Health. 2018;doi:10.1186/s12905-018-0561-9. 43. Page RL, Chilton J, Montalvo-Liendo N, Matthews D, Nava A. Empowerment in Latina immigrant women recovering from interpersonal violence: A concept analysis. J Transcult Nurs. 2017;28(6):531- 39. 44. Serrata JV, Hernandez-Martinez M, Macias RL. Self-empowerment of immigrant Latina survivors of domestic violence: A promotora model of community leadership. Hisp Health Care Int. 2016;14(1):37- 46. 45. References Lee Y, Park S. The mental health of married immigrant women in South Korea and its risk and protective factors: A literature review. Int J Soc Psychiatry. 2018;64(1):80-91. 45. Lee Y, Park S. The mental health of married immigrant women in South Korea and its risk and protective factors: A literature review. Int J Soc Psychiatry. 2018;64(1):80-91. 46. Paris R. “For the dream of being here, one sacrifices…”: Voices of immigrant mothers in a home visiting program. Am J Orthopsychiatry. 2008;78(2):141-51. 46. Paris R. “For the dream of being here, one sacrifices…”: Voices of immigrant mothers in a home visiting program. Am J Orthopsychiatry. 2008;78(2):141-51. 47. Choe SH. In changing South Korea, who counts as ‘Korean’?. 2012. https://www.nytimes.com/2012/11/30/world/asia/demographic-shifts-redefine-society-in-south- korea.html. Accessed 22 Dec 2019. 48. Ribeiro DC. Social support as a buffer of acculturative stress: A study of marital distress among undocumented, Mexican immigrant men. 2012. Georgia State University. 48. Ribeiro DC. Social support as a buffer of acculturative stress: A study of marital distress among undocumented, Mexican immigrant men. 2012. Georgia State University. 49. Piper N. Wife or worker? Worker or wife? Marriage and cross-border migration in contemporary Japan. Int J Popul Geogr. 2003;9(6):457-69. 49. Piper N. Wife or worker? Worker or wife? Marriage and cross-border migration in contemporary Japan. Int J Popul Geogr. 2003;9(6):457-69. 50. Chae SM, Park JW, Kang HS. Relationships of acculturative stress, depression, and social support to health-related quality of life in Vietnamese immigrant women in South Korea. J Transcult Nurs. 2014;25(2):137-44. 50. Chae SM, Park JW, Kang HS. Relationships of acculturative stress, depression, and social support to health-related quality of life in Vietnamese immigrant women in South Korea. J Transcult Nurs. 2014;25(2):137-44. 51. Jaung AH, Kim HJ, Jeong HJ. A study on the health status, social support and acculturative stress of Filipino marriage-migrant women. J Korea Acad Industr Coop Soc. 2011;12(12):5509-17. 51. Jaung AH, Kim HJ, Jeong HJ. A study on the health status, social support and acculturative stress of Filipino marriage-migrant women. J Korea Acad Industr Coop Soc. 2011;12(12):5509-17. 52. Reblin M, Uchino BN. Social and emotional support and its implication for health. Curr Opin Psychiatry. 2008;21(2):201-05. 52. Reblin M, Uchino BN. Social and emotional support and its implication for health. Curr Opin Psychiatry. 2008;21(2):201-05. Page 20/24 Page 20/24 53. Ministry of Gender Equality and Family. An analysis on the national survey of multicultural families 2015 (Original data in Korean). References Seoul: Ministry of Gender Equality and Family; 2016. 54. Mendoza-Denton R, Page-Gould E. Can cross-group friendships influence minority students' well- being at historically white universities?. Psychol Sci. 2008;19(9):933-39. 55. Noh S, Avison WR. Asian immigrants and the stress process: a study of Koreans in Canada. J Health Soc Behav. 1996;doi:10.2307/2137273. 56. Ryan RM, Deci EL. Self-detemination theory and the facilitation of intrinsic motivation, social development, and well-being. Am Psychol. 2000;55(1):68-78. 57. Lazarus RS, Kanner AD, Folkman S. Emotions: a cognitive-phenomenological analysis. In: Plutchik R, Kellerman H, editors. Theories of emotion. New York: Academic; 1980. p. 188-217. 58. Shiner RL. Linking childhood personality with adaptation: evidence for continuity and change across time into late adolescence. J Pers Soc Psychol. 2000;78(2):310-25. 59. Lyubomirsky S, King L, Diener E. The benefits of frequent positive affect: does happiness lead to success?. Psychol Bull. 2005;131(6):803-55. 60. Pressman SD, Cohen S. Does positive affect influence health?. Psychol B 61. Greeff AP, Ritman IN. Individual characteristics associated with resilience in single-parent families. Psychol Rep. 2005;96(1):36-42. 62. Ungar M. A construcionist discourse on resilience multiple contexts, multiple realities among at-risk children and youth. Youth Soc. 2004;35(3):341-65. 63. Helgeson VS, Lopez L. Social support and growth following adversity. In: Reich JW, Zautra AJ, Hall JS, editors. Handbook of adult resilience. New York: The Guilford; 2010. p. 309-30. 64. Stanton AL, Bower JE, Low CA. Posttraumatic growth after cancer. In: Calhoun LG, Tedeschi RG, editors. Handbook of posttraumatic growth: research and practice. New York: Psychology; 2006. p. 138-75. 65. Jacobson NS, Martell CR, Dimidjian S. Behavioral activation treatment for depression: returning to contextual roots. Clin Psychol (New York). 2001;8(3):255-70. 65. Jacobson NS, Martell CR, Dimidjian S. Behavioral activation treatment for depression: returning to contextual roots. Clin Psychol (New York). 2001;8(3):255-70. 66. Straiton ML, Ledesma HML, Donnelly TT. A qualitative study of Filipina immigrants’ stress, distress and coping: the impact of their multiple, transnational roles as women. BMC Womens Health. 2017;17(1):72. Tables Table 1: The sociodemographic characteristics of participants (n = 23) Page 21/24 Page 21/24 Characteristics Immigrant woman n=12 Program  manager n=11 Female Male     No. % No. % No. % Age 20-29 2 16.7 - - - - 30-39 8 66.6 6 54.5 1 9.1 40-49 2 16.7 2 18.2 - - 50 and over - - 2 18.2 - - Marriage Yes 12 100 8 72.7 0 - Employment Yes 5 41.7 10 90.9 1 9.1 Education Under elementary 2 16.7 - - - - Middle high or High 6 50.0 - - - - Over College 4 33.3 10 90.9 1 9.1 Origin Country Vietnam 3 25.0 - - - - China 5 41.7 - - - - Mongolia 1 8.3 - - - - Japan 3 25.0 - - - - Korea - - 10 90.9 1 9.1 Years of living in the host country Less than 5 years 1 8.3 - - - - 6-10 years 3 25.0 - - - - 11-15 years 5 41.7 - - - - More than 16 years 3 25.0 - - - - Years of working with migrants Less than 5 years - - 3 27.3 1 9.1 6-10 years - - 3 27.3 - - 11-15 years - - 2 18.2 - - More than 16 years - - 2 18.2 - - Number of children 1 5 41.7 - - - - 2 5 41.7 - - - - 3 2 16.6 - - - - Type of institution Public funded 12 100 10 90.9 1 9.1 Total   12 100 10 90.9 1 9.1 Characteristics Table 2: Themes and categories of marriage immigrant women’s resilience process Page 22/24 Page 22/24 Themes Categories Sub-categories 1.Staged process of growth Enduring difficulties Difficulties due to cultural differences Communication difficulty Conflicts due to family relationships Financial problems Collapse of stability Collapse of stability within 1 ~ 2 years Mental illness Access to professional help Informative support from friends Deciding whether to get help Professional and social support Meeting the needs of recognition, respect, and reward Developing skills in expression and communication Experience of growth Experience of positive emotion Change of view Efforts to strengthen growth 2.Absence of partner support Close yet far-away husbands   Support of a friend during collapse   3.Children as the driving force for change Positive effects of children   Negative impacts of children   4.The need for economic activity Benefits from economic activity   Loss from economic activity   5.Factors affecting difference in growth Spousal support   Satisfaction of women’s needs for recognition, respect, and reward Figure 1 The resilience model of marriage immigrant women in mental health promotion services Figures Page 23/24 Page 23/24 Page 23/24 190814FinaldraftCOREQ.docx Supplementary Files This is a list of supplementary files associated with this preprint. 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Robotic simultaneous resection of rectal cancer and liver metastases
Clinical case reports
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ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. Introduction Colorectal cancer (CRC) is the fourth leading cause of cancer-related death in the world [1]. Up to 25% of newly diagnosed patients with CRC and 50% of those undergoing clinical management may present with syn- chronous metastasis, with the liver being the most com- mon site for metastatic lesions [2]. For patients with colorectal liver metastasis (CRLM), the treatment strategy should largely be directed toward resectability. Without resection, median overall survival (OS) for patients with CRLM ranges from 20 to 24 months with modern chemotherapeutic regimens [3]. In those where an R0 resection of all metastatic disease is achieved, the 5-year OS has been reported to be as high as 58% [2–4]. No sources of funding were declared for this study. No sources of funding were declared for this study. Colorectal cancer, liver metastases, malignancy, oncology, robotic surgery, synchronous liver metastases. Received: 10 March 2017; Revised: 18 June 2017; Accepted: 24 July 2017 doi: 10.1002/ccr3.1138 minimally invasive surgery compared to open surgery, there has been increased interest in feasibility of robotic- assisted liver resection (RALR). Studies have demon- strated that outcomes following RALR are comparable to those of laparoscopic liver resections [11–14]. Although simultaneous laparoscopic colorectal and liver resections have been described, the literature is sparse with regard to simultaneous robotic-assisted liver and colorectal resections. We report a case of a patient with colorectal cancer and synchronous liver metastasis that underwent successful simultaneous robotic-assisted resection of a rectosigmoid cancer and colorectal liver metastasis. Robotic simultaneous resection of rectal cancer and liver metastases Correspondence Fayez A. Quereshy, Division of General Surgery, Toronto Western Hospital, 399 Bathurst Street, Main Pavilion, Room 8-320, Toronto, ON M5T 2S8, Canada. Tel: 416-603-5553; Fax: 416-603-5714; E-mail: Fayez.Quereshy@uhn.ca Key Clinical Message Surgical resection is the only potential cure for colorectal cancer with syn- chronous liver metastases (SLM). Simultaneous resection of colorectal cancer and SLM using robotic-assistance has been rarely reported. We demonstrate that robotic-assisted simultaneous resection of colorectal cancer and SLMs is feasible, safe, and has potential to demonstrate good oncologic outcomes. Clinical Case Reports 2017; 5(12): 1913–1918 doi: 10.1002/ccr3.1138 Case History/Examination/ Investigations Patients with synchronous CRLM can be treated with three different strategies; a liver first approach, a staged approach, or a simultaneous resection. Several retrospec- tive studies comparing these approaches have demon- strated that simultaneous hepatic and colorectal resections are safe in select patients [5–10]. Given the benefits of A 59-year-old man with a history of hypertension, dia- betes, and dyslipidemia presented with occasional bright red blood per rectum and anemia. The patient did not endorse any personal or family history of malignancy, and denied all constitutional or dysenteric symptoms. 1913 S. Sunil et al. S. Sunil et al. Combined robotic liver and CRC resection diaphragm in segment 4a/8 of the liver and three smaller lesions that were likely hemangiomas and a cyst. This patient was discussed at multidisciplinary tumor boards where the consensus was that a simultaneous resection, without neoadjuvant therapy, would be feasible. Given the location of the metastatic liver deposit high over the dome of the diaphragm, a robotic resection was proposed as it allowed advantages over a laparoscopic approach in ensuring greater access, ergonomics, and dexterity. Informed consent was obtained, and the patient was scheduled for a robotic low anterior resection (LAR) and a nonanatomical robotic liver resection with diverting ileostomy. Physical examination, including a digital rectal examina- tion, was unremarkable. A subsequent diagnostic colono- scopy revealed a mass 12 cm from the anal verge, which was tattooed and biopsied. Histological examination revealed a moderately differentiated adenocarcinoma. Staging MRI demonstrated a T2 or possibly early T3 lesion above the peritoneal reflection with one indetermi- nate 5 mm lymph node within the sigmoid mesocolon (Fig. 1). CT scans of the chest, abdomen, and pelvis (Fig. 2) revealed a 5-cm mass at the rectal sigmoid transi- tion and a 2.1 cm lesion in segments 4a/8 of the liver concerning for metastases. A subsequent liver MRI, com- pleted to fully work-up three other lesions, confirmed a 1.8 cm metastatic deposit high over the dome of the ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. Treatment A proximal resection margin was selected in the sigmoid colon 5 cm proximal to the tumor, and the mesentery was divided at this level using a 5-mm LigaSure device. This was then followed by a total mesorectal excision (TME) to the level of the pelvic floor. A flexible sigmoidoscopy was then conducted to mark the location of our distal margin 5 cm from the tumor. At the location of our distal margin, the mesorec- tum was circumferentially divided to skeletonize the rec- tum. The rectum was divided using a linear laparoscopic GIA 60 purple tristapler to obtain a tumor-specific TME (sTME). The da Vinci was undocked, with a total a total rectal dissection duration, including docking, of approxi- mately 190 min. The specimen was exteriorized using a 5-cm pfannenstiel incision and a wound protector device. The colon was divided approximately 5 cm proximal to the tumor, and the remaining colon was reintroduced into the abdomen after placement of a 28 EEA anvil in the bowel. Pneumoperitoneum was re-established and a primary tension-free laparoscopic colorectal anastomosis was fashioned using a 28 mm EEA circular stapler. segment 4a/8 of the liver. An intraoperative liver ultra- sound was conducted to rule out other liver lesions and to determine the transection line and resection margins of the aforementioned lesion. No additional malignant lesions were identified by an appropriately trained radiologist. A wedge resection was performed with 1 cm parenchymal margins using combination of monopolar scissors, bipolar maryland, and LigaSure device. The specimen was removed in a specimen pouch through the pfannenstiel incision. After ensuring hemostasis the robot was undocked, with a total liver resection time, including docking, of approxi- mately 180 min. Given the proximity of our distal margin to the anal verge (approximately 5 cm), our tumor-specific TME, and the potential morbidity with an anastomotic leak, it was decided to undergo proximal diversion. A loop ileost- omy was fashioned in the usual manner using laparo- scopic assistance. The patient was subsequently awoken from anesthesia and extubated. Blood loss was estimated to be approximately 300 cc. Total operative time was approximately 390 min. The patient was discharged on postoperative day six, tolerating a full diet. The final pathology showed a moderately differentiated adenocarci- noma with 2/36 positive nodes and clear microscopic margins at both the LAR and liver specimens. No lymph- vascular or perineural invasion was reported. Final staging was determined to be pT3N1bM1a. Treatment The epigastric and right mid abdomen 5-mm ports were upsized to 8-mm robotic ports. An additional 8-mm robotic port was placed two fingerbreadths below the costal margin at the midclavicular line (Fig. 3). The robot was redocked over the patient’s right shoulder, with an approx- imate docking time of 15 min. The metastatic liver lesion was identified high over the dome of the diaphragm at Treatment The patient was appropriately positioned and the abdo- men was entered using an open approach with placement of a 12-mm supraumbilical camera port. A 15-mm robotic trocar was placed in the right lower-quadrant (RLQ) at the half-way point between a line from the umbilical port to the anterior superior iliac spine (ASIS). Similarly, an 8- mm robotic port was placed in the left lower-quadrant (LLQ). A third 8-mm robotic port was placed in the LLQ lateral and superior to the previous port. Two 5-mm laparoscopic ports were subsequently inserted, one in the right midabdomen and one in the epigastric area (Fig. 3). The da Vinci (Sunnyvale, CA, USA) surgical system model S (Intuitive Surgical, Sunnyvale, CA, USA) was docked on the inferior left side of the patient, with an approximate docking time of 15 min (Fig. 3). Mobiliza- tion of the left colon was conducted using a lateral to medial approach. Subsequently, the medial aspect of sig- moid colon was dissected, identifying the superior hemor- rhoidal arch and superior mesenteric artery and vein (SMA/SMV). The IMA and IMV were skeletonized, and a Figure 1. Sagittal MRI pelvis demonstrating T2/T3 rectosigmoid mass. Figure 1. Sagittal MRI pelvis demonstrating T2/T3 rectosigmoid mass. (B) (A) (A) (B) Figure 2. (A) Computerized axial tomography of pelvis demonstrating a 5-cm mass at the rectosigmoid junction. (B) Computerized axial tomography of liver demonstrating a 2.1 cm suspicious lesion in segments 4a/8. (B) (A) Figure 2. (A) Computerized axial tomography of pelvis demonstrating a 5-cm mass at the rectosigmoid junction. (B) Computerized axial tomography of liver demonstrating a 2.1 cm suspicious lesion in segments 4a/8. 1914 ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. S. Sunil et al. Combined robotic liver and CRC resection Figure 3. Schematic diagram of port placement for robotic rectal and liver resection. C – 12-mm camera port, R – 8-mm robotic port, R* - 15- mm robotic port, L- 5-mm laparoscopic port. Figure 3. Schematic diagram of port placement for robotic rectal and liver resection. C – 12-mm camera port, R – 8-mm robotic port, R* - 15- mm robotic port, L- 5-mm laparoscopic port. regional lymphadenopathy was conducted. The superior hemorrhoidal branch was identified, cleared, and divided with surgical clips. A previously placed tattoo identifying the location of the tumor was identified at the level of the peritoneal reflection. ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. Discussion Interest in expanding the da Vinci’s application to col- orectal and liver procedures has been driven in part by the advantages it has over conventional laparoscopy, including greater range of articulation, tremor reduction, as well as improved depth perception and ergonomics. As demonstrated in this case, robot-assisted simultaneous resection of both CRC and CRLM is feasible and safe. A minimally invasive approach for primary CRC and liver metastasis allows for a complex operation with faster recovery and better outcomes compared to a conventional open approach. A recent systematic review by Lupinacchi et al. identified 14 studies involving laparoscopic simulta- neous resections of both the primary colorectal lesion and the CLRM. There was no conversion to open resection, and mortality was null. Estimated blood loss varied between 10 and 650 mL and was not related to the type of liver or colorectal resection preformed. Length of hos- pital stay ranged from 4 to 54 days with an average of 9 days [22]. However, utility and feasibility of robotic- assisted simultaneous resection for CRC and CRLM have not been clearly demonstrated in the past. Interest in expanding the da Vinci’s application to colorectal and procedures has been driven in part by the advantages it has over conventional laparoscopy, including greater range of articulation, tremor reduction, as well as improved depth perception and ergonomics. Total mesorectal excision, the gold standard procedure for rectal cancer, requires meticulous and precise dissec- tion under direct vision. The complex anatomy of the pelvis, restricted space and visibility, together with dimin- ished dexterity with laparoscopic instruments makes laparoscopic TME one of the most challenging of mini- mal access procedures. A robotic approach may offer a solution to some of these challenges [15, 16]. Systematic reviews and meta-analyses comparing robotic-assisted laparoscopic surgery (RALS) in colorectal cancer with conventional laparoscopic surgery (CLS) generally demonstrate a longer operative time when using robotic assistance [15–17]. Examining randomized controlled tri- als (RCT) comparing the two approaches reveals that the difference in operative time is not significant [18]. Studies have also shown that colorectal RALS has less estimated blood loss (EBL) compared to colorectal CLS [15–18]. Comparing other markers, there are no differences between either approach with respect to either days to soft diet or return of bowel function [15–18]. Analyzing only RCTs, however, suggests that patients return to bowel function sooner with RALS than with CLS [18]. Outcome and Follow-up Upon completion of pseudo-adjuvant systemic therapy, the patient underwent a hypaque enema prior to reversal ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. 1915 1915 Combined robotic liver and CRC resection S. Sunil et al. Minimally invasive approaches in liver surgery have the potential to offer many of the same benefits as in colorec- tal surgery. There have been two published systematic reviews examining RALS for liver resections. Mean opera- tive times ranged from 200 to 507 min between both reviews. The mean LOS ranged from 5.5 to 11.7 days and the conversion rates were between 4.6% and 6.6%. No perioperative mortalities were reported in any of the stud- ies in either review [20, 21]. Of the studies comparing RALR with conventional laparoscopic liver resection (CLLR), blood loss, resection margins, LOS, and morbid- ity were similar with the two approaches [11–14]. Con- version rate was reported in one study and was found to not be different between CLLR and RALR [14]. of his ileostomy. This revealed no evidence of an anasto- motic leak; a subsequent flexible sigmoidoscopy, however, revealed a low-grade stricture at the colorectal anastomo- sis requiring balloon dilatation. The patient went on to receive an uncomplicated reversal of his ileostomy fol- lowed by scheduled outpatient surveillance. At the 20- month mark, the patient demonstrated no clinical or radiographic signs of recurrence. They were tolerating a normal diet and slowly regaining regularity in bowel movements, without any evidence of LAR syndrome on clinical assessment. ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. Conflict of Interest None declared. Authorship SS, JR, AA, and DH: participated in the acquisition and analysis of data, literature review, and writing of the manuscript. SC and FAQ: were involved in the medical care of the patient, drafting of the manuscript, and acqui- sition and analysis of data. All authors approved the final version of the manuscript. Discussion CRC, Colorectal cancer; CRLM, colorectal liver metastasis; EBL, estimated blood loss; LOS, length of stay; RALS, robotic-assisted laparoscopic surgery. 9 days demonstrated by Lupinacchi et al., in a systemic review of combined laparoscopic liver and rectal resection [22]. Our total operative time of 390 min is in keeping with the two prior reports of combined robotic resection (360–480 min) [25, 26]. Furthermore our operative dura- tion is also concordant with a recent study of 142 cases of combined laparoscopic combined colorectal and liver resections demonstrating a median operative time of 360 min [27]. This case demonstrates that using the DaVinci-S model, simultaneous resection can be con- ducted in a time conscious manner while also providing the additional benefits of the robotic platform for difficult to reach laparoscopic lesions of the liver, including those high over the dome of the diaphragm. Newer robotic platforms such as the DaVinci Xi have the potential to further reduce operative times by reducing docking times secondary to their boom mounted arms. References 1. Brenner, H., M. Kloor, and C. Pox. 2014. Colorectal cancer. Lancet 383:1490–1502. 2. Smith, J., and M. D’Angelica. 2015. Surgical management of hepatic metastases of colorectal cancer. Hematol. Oncol. Clin. North Am. 29:69–84. 2. Smith, J., and M. D’Angelica. 2015. Surgical management of hepatic metastases of colorectal cancer. Hematol. Oncol. Clin. North Am. 29:69–84. We believe this case highlights several important points. Firstly, application of the robot-assisted daVinci system is feasible in the hands of well-trained surgeons. Secondly, this report demonstrates that highly complex robotic-assisted surgery can be conducted safely with regard to the intraoperative and postoperative manage- ment of patients with CRC and CRLM. Finally, this case also demonstrates that a robotic-assisted simultane- ous resection for CRC and CRLM has the potential for demonstrating good short- and long-term oncologic outcomes with the potential for shorter length of stay. Further research involving larger cohort of patients is needed to confirm the efficacy of simultaneous robot- assisted surgery with regard to both short and long- term metrics. 3. Castellanos, J., and N. Merchant. 2014. Strategies for management of synchronous colorectal metastases. Curr. Surg. Rep. 2:62–74. 4. Macedo, F., and T. Makarawo. 2014. Colorectal hepatic metastasis: evolving therapies. World J. Hepatol. 6:453– 463. 4. Macedo, F., and T. Makarawo. 2014. Colorectal hepatic metastasis: evolving therapies. World J. Hepatol. 6:453– 463. 5. Lykoudis, P. M., D. O’Reilly, K. Nastos, and G. Fusai. 2014. Systematic review of surgical management of synchronous colorectal liver metastases. Br. J. Surg. 101:605–612. 6. Reddy, S. K., T. M. Pawlik, D. Zorzi, A. L. Gleisner, D. Ribero, L. Assumpcao, et al. 2007. Simultaneous Resections of Colorectal cancer and synchronous liver Metastases: a multi-institutional analysis. Ann. Surg. Oncol. 14:3481– 3491. 7. Hillingsø, J. G., and P. Wille-Jørgensen. 2009. Staged or simultaneous resection of synchronous liver metastases from colorectal cancer - a systematic review. Colorectal Dis. 11:3–10. Discussion Comparing length of stay (LOS) with respect to both approaches yields contentious results. Some meta-analyses report no difference in LOS [17], while others favor RALS as having a slightly shorter LOS [16]. Rates of conversion to open surgery have been reported to be between 2% and 9.5% with RALS [15–19]. One pooled analysis reported conversion rates twice as high with RALS [17] while another reported greater rate of conversion with CLS, with magnified differences in the rectal cancer population [16]. p p p p g Given the potential benefits of the da Vinci system over laparoscopic surgery at the operator level, its application to complex simultaneous resections could potentially be advantageous. There are case reports of combined col- orectal and prostate or uterine procedures 23, 24]. How- ever, there are far fewer reported cases of full robot- assistance in resection of both CRC and CRLM. Our liter- ature search revealed only two other studies that reported such procedures (Table 1). The first involved a simultane- ous da Vinci-assisted left lateral sectionectomy and low anterior resection for a rectosigmoid primary with an associated 1.5 cm mass on segment 3 of the liver [25]. The second involved a one-stage da Vinci-assisted resec- tion of a primary rectal cancer 13 cm from the anal verge with liver and lung metastases [26]. Our present case, demonstrates blood loss and operative times comparable to these aforementioned studies. Similarly, we demon- strated equivalent oncologic and 30-day outcomes with a shorter length of stay. Our length of stay of 6 days using the robotic approach was lower than the average of 1916 ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. Combined robotic liver and CRC resection S. Sunil et al. Table 1. Literature review summary of fully robot-assisted resection of CRC and CRLM. Table 1. Literature review summary of fully robot-assisted resection of CRC and CRLM. Study No. of Patients No. of Patients Liver RALS No. of Patients Colorectal RALS EBL Operative Time LOS 30-day Morbidity Oncologic Margins Choi 2008 1 1 1 700 360 13 None Free Xu 2015 1 1 1 600 480 7 None Free Current case 1 1 1 300 390 6 None Free CRC, Colorectal cancer; CRLM, colorectal liver metastasis; EBL, estimated blood loss; LOS, length of stay; RALS, robotic-assisted laparoscopic surgery. Consent Written informed consent was obtained from the patient for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in-Chief of this journal. 8. Mayo, S. C., C. Pulitano, H. Marques, J. Lamelas, C. L. Wolfgang, W. de Saussure, et al. 2013. Surgical management of patients with synchronous Colorectal liver 1917 ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. S. Sunil et al. Combined robotic liver and CRC resection Metastasis: a Multicenter international analysis. J. Am. Coll. Surg. 216:707–716. surgery: a meta-analysis of four randomized controlled trials. World J. Surg. Oncol. 12:122. 19. Kim, C. W., and S. H. Baik. 2014. Outcomes of robotic- assisted Colorectal surgery compared with Laparoscopic and open surgery: a systematic review. J. Gastrointest. Surg. 18:816–830. 9. Slesser, A., C. Simillis, R. Goldin, G. Brown, S. Mudan, and P. Tekkis. 2013. A meta-analysis comparing simultaneous versus delayed resections in patients with synchronous colorectal liver metastases. Surg. Oncol. 22:36–47. 20. Pelletier, J.-S., R. S. Gill, X. Shi, D. W. Birch, and S. Karmali. 2013. Robotic-assisted hepatic resection: a systematic review. Int. J. Med. Robot. Comp. Assis. Surg. 9:262–267. 10. Yin, Z., C. Liu, Y. Chen, Y. Bai, C. Shang, R. Yin, et al. 2013. Timing of hepatectomy in resectable synchronous colorectal liver metastases (SCRLM): simultaneous or delayed? Hepatology 57:2346–2357. 21. Ho, C.-M., G. Wakabayashi, H. Nitta, N. Ito, Y. Hasegawa, and T. Takahara. 2012. Systematic review of robotic liver resection. Surg. Endosc. 27:732–739. 11. Yu, Y. D., K. H. Kim, D. H. Jung, J. M. Namkoong, S. Y. Yoon, S.-W. Jung, et al. 2014. Robotic versus laparoscopic liver resection: a comparative study from a single center. Langenbecks Arch. Surg. 399:1039–1045. 22. Lupinacci, R. M., W. Andraus, L. B. De Paiva Haddad, A. Carneiro D0AlbuquerqueL, and P. Herman. 2013. Simultaneous laparoscopic resection of primary colorectal cancer and associated liver metastases: a systematic review. Tech. Coloproctol. 18:129–135. 12. Tranchart, H., C. Ceribelli, S. Ferretti, I. Dagher, and A. Patriti. 2014. Traditional versus robot-assisted full Laparoscopic liver Resection: a matched-pair comparative study. World J. Surg. 38:2904–2909. 23. Lavery, H. J., S. A. Patel, E. Chin, and D. B. Samadi. 2011. Combined robotic-assisted Laparoscopic Prostatectomy and Laparoscopic Hemicolectomy. JSLS 15:550–554. 13. Berber, E., H. Y. Akyildiz, F. Aucejo, G. Gunasekaran, S. Chalikonda, and J. Fung. 2010. Robotic versus laparoscopic resection of liver tumours. ª 2017 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd. Consent HPB 12:583–586. 24. Baik, S. H., Y. T. Kim, Y. T. Ko, C. M. Kang, W. J. Lee, N. K. Kim, et al. 2007. Simultaneous robotic total mesorectal excision and total abdominal hysterectomy for rectal cancer and uterine myoma. Int. J. Colorectal Dis. 23:207–208. 14. Tsung, A., D. A. Geller, D. C. Sukato, S. Sabbaghian, S. Tohme, J. Steel, et al. 2014. Robotic versus laparoscopic hepatectomy: a matched comparison. Ann. Surg. 259:549–555. 15. Mirnezami, A. H., R. Mirnezami, A. K. Venkatasubramaniam, K. Chandrakumaran, T. D. Cecil, and B. J. Moran. 2010. Robotic colorectal surgery: hype or new hope? A systematic review of robotics in colorectal surgery. Colorectal Dis. 12:1084–1093. 25. Choi, S. B., J. S. Park, J. K. Kim, W. J. Hyung, K. S. Kim, D. S. Yoon, et al. 2008. Early experiences of robotic- assisted Laparoscopic liver Resection. Yonsei Med. J. 49:632. 26. Xu, J.-M. 2015. Robot-assisted one-stage resection of rectal cancer with liver and lung metastases. World J. Gastroenterol. 21:2848. 16. Yang, Y., F. Wang, P. Zhang, C. Shi, Y. Zou, H. Qin, et al. 2012. Robot-assisted versus conventional Laparoscopic surgery for Colorectal disease, focusing on Rectal cancer: a Meta-analysis. Ann. Surg. Oncol. 19:3727–3736. 27. Feretti, S., H. Tranchart, J. F. Buell, C. Eretta, A. Patriti, M. G. Spampinato, et al. 2015. Laparoscopic simultaneous resection of colorectal primary tumor and liver metastases: results of a multicenter international study. World J. Surg. 39:2052. 17. Trinh, B. B., A. T. Hauch, J. F. Buell, and E. Kandil. 2014. Robot-assisted versus standard Laparoscopic Colorectal surgery. JSLS 18:e2014.00154. 18. Liao, G., Z. Zhao, S. Lin, R. Li, Y. Yuan, S. Du, et al. 2014. Robotic-assisted versus laparoscopic colorectal 1918 ª 2017 The Authors. 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An Effective Implementation of Autonomous Attendance System using Convolution Neural Networks
International journal of innovative technology and exploring engineering
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Purushothaman S, Hariharasudhan M, Dinakaran V, Gogulselvam R, Akilan R procedures, so that these details may later be utilized to monitor every single activity in the space for security purposes. The authentication mechanism for identifying a person's presence in a room or facility is still evolving. Depending on whether a name and signature are recorded in the attendance list, an identification card is utilised or biometric verification technologies such as a fingerprint or face scanner are employed, the procedure varies. One of the most promising approaches has emerged: biometric authentication. The biometric authentication approach used, however, is still ineffective and takes a long time to complete. The fingerprint scanner requires the user to insert their finger into the scanner, whereas the face scanner requires the user to change their face position to match the location of the scanner. This project will offer a facial recognition authentication mechanism using a web camera. Abstract Attendance marking is a common method used by all educational institutions at all levels to keep track of students' daily presence. Previously, attendance was recorded manually. These procedures are precise and remove the possibility of enrolling false attendance, but they are time-consuming and labor-intensive for a big number of pupils. Autonomous systems based on radio frequency recognition scanning, fingerprint scanning, face recognition, and iris scanning are being developed to address the drawbacks of manual systems. Each strategy has pros and cons. Furthermore, most of these systems are limited by the requirement for one-on-one human interaction to record attendance. In this work, we developed a durable and effective attendance recording system based on a single group photograph that detects face identification and recognition algorithms to solve the limitations of existing human and autonomous attendance management systems. Using a high-definition camera mounted in a fixed position, a group of photos is collected for all of the students sitting in a classroom. Following that, using a typical approach, photos of the faces are extracted from the group photo, followed by identification using a convolution neural network acquainted in a student face database. We tested our approach using a range of group pictures and datasets. In terms of efficiency, convenience of use, and implementation, the suggested framework beats existing attendance tracking systems, according to our findings. The suggested system is a self-contained attendance system with minimal human-machine interaction, making it simple to integrate into a smart classroom. Marking attendance would be a regular practise in both schools and workplaces. International Journal of Innovative Technology and Exploring Engineering (IJITEE) ISSN: 2278-3075 (Online), Volume-11 Issue-7, June 2022 Purushothaman S, Hariharasudhan M, Dinakaran V, Gogulselvam R, Akilan R Attendance is regarded as crucial in educational institutions, both for students and instructors. Keeping track of student attendance in a classroom can be challenging. There are two types of attendance systems available: manual and automatic. The most common manual attendance method is the roll call technique, in which a teacher records presence by calling out the students' names one by one. The approach is antiquated, and in the case of a large class, it may take more than 10 minutes per day and has the greatest number of proxy attendance marking opportunities. The second method is to sign an attendance record or sheet. Because it is easily manipulated and faked if left unmanaged, this is the most time-consuming stage. Modern biometric approaches are emerging as one of the most promising authentication methods when compared to traditional authentication techniques. Putting a person's name, address, and signature on a piece of paper is the standard authentication technique, as is giving someone access to a physical or virtual environment via a password, PIN (Personal identifying number), smart card, plastic card, token, key, or other means. Passwords and PINs are difficult to remember and, in many cases, easy to steal or suspect. One of them is the use of facial recognition as a biometric authentication mechanism. As technology progresses, automatic attendance systems based on RFID tag scanning are also being deployed [1]. Each student has a unique tag that is scanned in these systems to determine attendance. The system's flaws include extensive hardware requirements, a tag for each student, proxy attendance via tag exchange among peers, and just one human-system interaction for marking attendance. Keywords: Attendance Recording, Autonomous system, Convolution Neural Network, Face Recognition, Iris Scanning, Smart Class room. * Correspondence Author Purushothaman S*, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Email: purushoth.satha@gmail.com. Hariharasudhan M, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Dinakaran V, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Gogulselvam R, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Gogulselvam R, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Akilan R, Department of Electronics and Communication Engineering, V.S.B Engineering College, Karur (Tamil Nadu) India. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. © The Authors. Published by Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP). This is an open access article under the CC BY NC ND license http://creativecommons org/licenses/by nc nd/4 0/ CC-BY-NC-ND license http://creativecommons.org/licenses/by-nc-nd/4.0/ Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org I. INTRODUCTION On One of the usual security procedures seems to be the evaluation criteria that determine the presence of a person in a room or place. Every individual who enters a room or building must first go through a series of authentication Manuscript received on 10 May 2022. Revised Manuscript received on 16 May 2022. Manuscript published on 30 June 2022. * Correspondence Author Manuscript received on 10 May 2022. p y Revised Manuscript received on 16 May 2022. Manuscript published on 30 June 2022. B. Algorithm for recognition It is necessary to build a database for training the recognition algorithm before the system may begin tracking attendance. To do so, we must first create a database containing student face pictures and other information. Individual or group video is used to capture the facial images. Individual student face shots are automatically chopped and placed in the appropriate files based on their different identities in the group film. Trimming each image from the group input individually, on the other hand, could be time consuming. As a result, another path has been added. The first biometric attendance system used fingerprint scans as its biometric input [2]. Every student has a unique fingerprint that is scanned to keep track of their attendance. One of the system's flaws is that it can only record one attendance at a time and that it requires a lot of human-machine interaction during the process. Fingerprint cards were no longer required as a proxy with the iris scan-based attendance system. This system examines a pupil's iris pattern to track attendance [3]. Face recognition is also often used to identify people in a large crowd or location. Facial recognition is also being used by institutions to track attendance. Face recognition, fingerprint, and iris scanning-based attendance systems have the disadvantages of being time consuming, needing more human-machine interaction because only one student can register attendance at a time, and being impracticable to utilize in big courses. The second method is importing a film with only one pupil and editing and saving the required number of face shots in various poses in a designated folder. This technique is easy and quick. In the next phase, the basic information about students is saved in a file for attendance tracking. This information can be used to notify students at any time in order to keep track of their attendance. The significant computation required during classifier training is one of the remaining flaws in the face detection approach. This difficulty was solved by Minh-Tri Pham and Tat-Jen Cham [7], who used statistical techniques to minimize the time necessary for training. The findings were fairly impressive in terms of decreasing the necessary processing time. Several of the most widely used face recognition-based attendance systems have already been examined. Jayant et al. used hybrid face recognition algorithms to track attendance [4]. Ofualagha et al. employed FACECUBE to track attendance [5]. D'Souza et al. C. Attendance Verification From the user's standpoint, the attendance marking technique is straightforward and completely automated. When the start button is pressed, the operation begins and lasts approximately 15 minutes until the results are displayed and saved. The first frame is collected after loading a live video into the software. The detection method is used to detect the children's faces, which are subsequently cropped and saved in a distinct folder. The clipped faces are then recognized using a recognition strategy that employs a trained deep learning convolution neural network model. Finally, the number of people who have been acknowledged is recorded. When the recognition phase is finished, the remaining and unrecognized faces in the class are marked absent. To save memory, the chopped faces from the intermediate phases are removed. The method is repeated for the next 15 frames, ensuring that all present pupils are identified, even if they were not captured in one of the frames. Finally, average attendance is determined, and pupils with attendance above a certain percentage threshold are classified present, while those with lower attendance are labeled absent. The report is retained for future use for each topic and lecture, and the total number of students present is displayed on the App interface. From the user's standpoint, the attendance marking technique is straightforward and completely automated. When the start button is pressed, the operation begins and lasts approximately 15 minutes until the results are displayed and saved. The first frame is collected after loading a live video into the software. The detection method is used to detect the children's faces, which are subsequently cropped and saved in a distinct folder. The clipped faces are then recognized using a recognition strategy that employs a trained deep learning convolution neural network model. Finally, the number of people who have been acknowledged is recorded. Because it is a nonintrusive methodology, pictures can be acquired from a distance, it is a cost-effective option, there is no danger of proxy attendance being recorded, and it is a user-friendly yet dependable way, the biometric system is the most practical solution in building attendance systems. We used video from a camera and facial recognition and recognition to construct an automatic attendance system in this investigation. recorded videos saved in the camera memory are used in offline mode. recorded videos saved in the camera memory are used in offline mode. recorded videos saved in the camera memory are used in offline mode. III. PROPOSED METHODOLOGY Biometrics such as fingerprint and iris scans are used in the attendance system. Face recognition is accomplished using the Viola Jones algorithm. The model's accuracy is good when compared to existing systems. The bulk of existing systems employ finger print and manual process attendance methods. Employees or students may easily cheat businesses in a manual procedure. During pandemics, the finger print-based technique may result in an excess of covid-19. One of the usual security procedures seems to be the evaluation criteria that determine the presence of a person in a room or place. Every individual who enters a room or building must first go through a series of authentication procedures, so that these details may later be utilized to monitor every single activity in the space for security purposes. The authentication method for detecting the presence of a person in a room or building is still in flux. B. Algorithm for recognition used a histogram-based facial recognition algorithm to construct an attendance marking system [6]. As a result, developing an intelligent attendance system that can reliably record attendance without requiring human contact is crucial. An Effective Implementation of Autonomous Attendance System using Convolution Neural Networks Implementation of Autonomous Attendance System using Convolution Neural Networks Numerous automatic attendance systems based on fingerprint scanning, iris scanning, and face identification have evolved as a result of image processing in attendance systems. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 1 Gray scale conversion, resizing, normalization, and augmenting are four critical phases in the preprocessing of the obtained data. On the processed data, the CNN architecture was installed and trained. The automatic facial detection block stores and deploys the learned model. The proposed model aids in the precise identification of trained faces. Attendance is recorded if the face is recognized. The procedure differs depending on whether a name and signature are written in the attendance list, an identification card is used or biometric verification technologies such as a fingerprint or face scanner are used. For face identification from a group picture, the suggested system employs the DCNN Algorithm. Face data is obtained from the user in the first stage using OpenCV tools. From the user, over 1000 photos have been collected. Fig 1. Block diagram of proposed model Fig 1. Block diagram of proposed model provide the better accuracy. In this proposed face recognition group face picture attendance system using YOLO Algorithm. This work is a live attendance system based on facial recognition algorithms. It is a smart, one input, and many outputs attendance system. This solution solves the issues that arise with standard systems. 3) SVM classifier reduced the complexity of work and improved the robustness of system. 3) SVM classifier reduced the complexity of work and improved the robustness of system. A. Image Gathering The suggested system accepts data from both online and offline sources, including live and recorded video. In online mode, live video is taken from the camera linked through IP address; however, in the event of internet connectivity issues, Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 2 International Journal of Innovative Technology and Exploring Engineering (IJITEE) ISSN: 2278-3075 (Online), Volume-11 Issue-7, June 2022 International Journal of Innovative Technology and Exploring Engineering (IJITEE) ISSN: 2278-3075 (Online), Volume-11 Issue-7, June 2022 IV. CNN ARCHITECTURE  Image input layer: The Image input Layer learn the feature from the input image. The first step define pixel of input image, the image size define (50:50).  Convolution layer: The convolution layer extract the features of image from the image input layer.CNN layer consists of one or more kernel with different weight that are used for extract the features of input image. Depending on weights associated with each Filter we can extract the feature of image.  Pooling layer: Down sampling of image convolved features is applied by the pooling layer. When the input picture is found to be nonlinear the dimension of the image's features map is provided by the pooling layer. Fig 2. Image classification in CNN Architecture  Fully connected layer: The layer that is completely interconnected the 26 classes of image data, the above layer of five blocks interconnected which is classified by the fully connected layer of system, based on the class score we can classify the predicted score. This research work describes the image classification using deep neural network combined with HOG feature extraction with K-means segmentation algorithm and classifies through SVM classifier for more accuracy. The following advantage of proposed system Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. p p y 1) The proposed CNN method reduces the number of preprocessing steps. 2) Extra shape feature extracted from HOG algorithm for Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org A. Deep neural network A Complete 2D dimensional neural network consist of number of image input layer, convolution layer ,Re Lu layer, Max pooling 2D layer ,Fully connected layer ,Soft max Layer and classification layer ,the detail description of each layer of classifiers compete . IV. CNN ARCHITECTURE Fig 2. Image classification in CNN Architecture 2. Video capture Fig 3. Creating Students data set The OpenCV library in Python has been used to capture video from a camera. In this work, dataset of 1000 images separated into three processes: training, validation and testing. Pre-processing the data such as resizing and grey scale is the first step. So it is resized the image to standard format. V. YOLO ARCHITECTURE retrieving data from them. OpenCV may be used to analyse images and movies in order to recognise objects, people, and even human handwriting. Face identification, object recognition, and medical image analysis are some of the applications of OpenCV. (You Only Look Once) are a Deep Learning (DL) network that detects objects. YOLO recognizes objects in photos by categorizing them and determining their location with respect to one another. For example if you give a YOLO network an image of a herd of sheep, it will generate a vector of bounding boxes for each individual animal and classify it accordingly. There are three main components to a YOLO network. The predictions vector, often known as the algorithm, comes first. The network, on the other hand, is a separate entity. The loss functions are the final step. (You Only Look Once) are a Deep Learning (DL) network that detects objects. YOLO recognizes objects in photos by categorizing them and determining their location with respect to one another. For example if you give a YOLO network an image of a herd of sheep, it will generate a vector of bounding boxes for each individual animal and classify it accordingly. B. Data Collection 4 Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. B. Data Collection Fig 4. Sample data collection 4. Image Processing Fig 4. Sample data collection The collected images will be resized and converted into gray scale images. VI. EXPERIMENTAL RESULTS The suggested system's expected outcome is to automatically mark attendance for students in the class utilizing single group video. The attendance is eventually recorded in an excel sheet depending on the presence or absence of the student, which is recognized using facial recognition in the aforementioned model. 1. The YOLO Algorithm When you feed an image into a YOLO algorithm, it splits it into a SxS grid that it uses to forecast if a given bounding box contains the item (or portions of it) and then predicts a class for the object. We must first understand how the algorithm constructs and specifies each bounding box before we can go into depth and describe how it works. To forecast an output, the YOLO algorithm employs four components and an extra value. A. Data set Creation  A bounding box's centre (bx by)  Dimensions (bw)  Dimensions (bh)  The object's classification (c) Confidence is the final anticipated number (pc). It denotes the likelihood of an object existing within the bounding box. The centre of the enclosing box is represented by the (x,y) coordinates. We must utilize the pc prediction since majority of the bounding boxes will not contain an item. We may delete unneeded boxes with a low chance of containing objects and those that share large regions with other boxes using a technique called non-max suppression. 6. Attendance system The camera will be turned on during this operation, and all of the faces with in frame will be captured. The attendance entries are made if the trained face is identified in the frame. 5. Model training The CNN model is trained on the preprocessed picture. The model was put upon this attendance system after the training procedure was finished. 7. Dataset creation Dataset to student is built in this module using OpenCV-python. A dataset was created by collecting 1,000 images in each and every student. Fig 4. Sample data collection Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. 9. Model development The developed model is used to track student attendance using a facial detection code. There are three main components to a YOLO network. The predictions vector, often known as the algorithm, comes first. The network, on the other hand, is a separate entity. The loss functions are the final step. 3. Frame conversion The video was captured and translated into picture frames. 30 frames have been extracted each second. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 3 Fig 6. Automatic Attendance Marking System 10. A. Krizhevsky, I. Sutskever, and G. Hinton, “Imagenet classification with deep convolutional neural networks” Advances in Neural Information Processing Systems, 25, 2012. After images are extracted from CNN features, the output of images is identified according to their individual image data set which was stored in the data base. The recognized images are plotted in Excel format and show their corresponding name with time of presence. 11. G. Fierro, O. Rehmane, A. Krioukov, and D. Culler “Zone-level occupancy counting with existing infrastructure,” Proceedings of the Fourth ACM Workshop on Embedded Sensing Systems for Energy-Efficiency in Buildings, 2012, pp. 205-206. [CrossRef] 12. O.T. Arulogun, A. Olatunbosun, O.A. Fakolujo and O. Olaniyi, “RFID-Based Students Attendance Management System,” International Journal of Scientific & Engineering Research. 4(2), 2013. 8. OpenCV Computerized vision is a method for understanding how photos and movies are stored, as well as manipulating and Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 4 International Journal of Innovative Technology and Exploring Engineering (IJITEE) ISSN: 2278-3075 (Online), Volume-11 Issue-7, June 2022 International Journal of Innovative Technology and Exploring Engineering (IJITEE) ISSN: 2278-3075 (Online), Volume-11 Issue-7, June 2022 attendance. In today's culture, there are several biometric systems to choose from. Face recognition, on the other hand, is a viable option because of its high accuracy and minimal human engagement. This system's purpose is to give a high level of protection. In future, this proposed work is implementing in real time class room monitoring system with building a hardware components of notice board display and android application enabled in Smartphone instead of Desktop. In this work, we are collected samples of three student’s data and processed for face extraction. For training the ML model the following actions are carried out for pre-processing process. Here the combinations of multiple data set to get a large corpus. Normalization reduces the size by the order of magnitude of data. C. Face extraction After creating database, the data sets are introduced into image preprocessing after that the images are trained and stored in CNN data base. In that frame conversion and image extraction are performed in this section. Finally, the images are classified according to their CNN features. D. Output of Attendance Marking System 7. P. Viola, and M. Jones, “Rapid Object Detection Using a Boosted Cascade of Simple Features,” IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), 2001, pp.511-518. 8. Degtyarev, Nikolay and O. Seredin, “Comparative testing of face detection algorithms,” Image and Signal Processing. Springer Berlin Heidelberg, 2010, pp. 200-209. [CrossRef] g pp 9. C. Tomasi, and T. Kanade, “Detection and tracking of point features. Technical report,” International Journal of Computer Vision, 1991. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org REFERENCES 1. T. S. Lim, S. C. Sim, and M.M. Mansor, “RFID based attendance system,” IEEE Symposium on Industrial Electronics Applications. 2(1), 2009, pp. 778–782. Fig 5. Classification of student faces 2. A. Purohit, K. Gaurav, C. Bhati, and A. Oak, “Smart Attendance,” International conference of Electronics Communication and Aerospace Technology (ICECA). 1(1), 2017, pp. 415–419. [CrossRef] Technology (ICECA). 1(1), 2017, pp. 415–419. [CrossRef] 3. K.O. Okokpujie, E. Noma-Osaghae, O.J. Okesola, S.N. John, and O. Robert, “Design and implementation of a student attendance system using iris biometric recognition,” International Conference on Computational Science and Computational Intelligence (CSCI), 2017, pp. 563–567. [CrossRef] 4. N.K. Jayant, and S. Borra, “Attendance management system using hybrid face recognition techniques,” Conference on Advances in Signal Processing (CASP), 2016, pp. 412–417. [CrossRef] 5. O. Godswill, O. Osas, O. Anderson, I. Oseikhuemen, and O. Etse, “Automated student attendance management system using face recognition,” Int., J., of Educational Research and Information Science. 5(4), 2018, pp. 31–37. 6. J.S.W. D'Souza, S. Jothi, and A. Chandrasekar, “Automated Attendance Marking and Management System by Facial Recognition Using Histogram,” 5th International Conference on Advanced Computing & Communication Systems (ICACCS), Coimbatore, India. 2019, pp. 66-69. [CrossRef] Fig 5. Classification of student faces D. Output of Attendance Marking System D. Output of Attendance Marking System AUTHORS PROFILE Purushothaman S, M.Tech., Ph.D degree from Anna University, Chennai. Currently working as Assistant Professor, Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu, India. Having 9 years of Experience in Teaching. My scientific research is focusing on Nano electronics, Supercapacitor, MEMS Technology and Communication Networks. My strengths are driven to inspire students to pursue academic and personal excellence. I am well prepared to dedicate myself to the highest standards of instruction. Hariharasudhan M, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Hariharasudhan M, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Dinakaran V, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Dinakaran V, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Gogulselvam R, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Implementation of Autonomous Attendance System using Convolution Neural Networks 19. H.L. Dhanush Gowda, K. Vishal, B.R. Keertiraj, Neha Kumari Dubey., and M. Pooja, “Face Recognition based Attendance System,” International Journal of Engineering Research & Technology. 9(6), 2020. [CrossRef] 20. Ming, Du., C. Aswin, Sankaranarayanan, and Rama Chellappa, “Robust Face Recognition from Multi-View Videos,” IEEE Transactions On Image Processing, 23(3), 2014. [CrossRef] VII. CONCLUSION 13. C. Rafael, and Gonzalez, “Digital Image Processing,” Pearson Publications. In this work, we developed a sophisticated single-input, multiple-outputs attendance management system using facial recognition algorithms. This method eliminates the problems that come with traditional solutions. These methods are not advised since they are time-consuming and require each participant to enter the system separately to mark his or her attendance. In our work, we show an automated facial recognition attendance approach that comprises taking attendance by employing a camera in front of the classroom to get real-time photographs of the whole class, recognize the faces in the image, crop the image, and compare it to a database. A student is marked present once he or she has been identified. The method is performed several times to increase system efficiency, and the final results are recorded in an excel file. This automatic attendance system saves students' important study time because it runs in the background and requires little to no interaction from teachers or students. This method also reduces the likelihood of proxies and fake 14. P. Viola, and J. Jones, “Robust Real-Time Face Detection,” International Journal of Computer Vision. 57(2), 2004, pp. 137–154. [CrossRef] 15. M.A. Turk, and A. P. Pentland, “Face Recognition Using Eigenfaces,” in Proc. IEEE Conference on Computer Vision and Pattern Recognition. 1991, pp. 586–591. 16. M.H. Yang, N. Ahuja, and D. Kriegmao, “Face recognition using kernel eigen faces,” IEEE International Conference on Image Processing. 1, pp.10-13. 17. O.A. Idowu, and O. Shoewu, “Attendance Management System using Biometrics,” The Pacific Journal of Science and Technology. 13(1), 2012, pp.300-307. 18. N. Rekha, and M.Z. Kurian, “Face detection in real time based on HOG,” International Journal of Advanced Research in Computer Engineering & Technology. 3.4, 2014, pp.1345-1352. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 5 An Effective Implementation of Autonomous Attendance System using Convolution Neural Networks 19. H.L. Dhanush Gowda, K. Vishal, B.R. Keertiraj, Neha Kumari Dubey., d M P j “F R iti b d Att d S t ” AUTHORS PROFILE Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Gogulselvam R, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Akilan R, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. Akilan R, B.E degree from Anna University, Chennai. Currently studying in the Department of Electronics and Communication Engineering, V.S.B. Engineering College, Karur, Tamil Nadu , India. I have worked hard in my education and now I am ready to apply my knowledge into practice. While I don’t have any real life work experience. I’ve had a lot of exposure to the research environment. A lot of courses involved working with real companies to solve real problems. 6 Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. 6 Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. 6 Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. 6 Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Published By: Blue Eyes Intelligence Engineering and Sciences Publication (BEIESP) © Copyright: All rights reserved. Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org An Effective Implementation of Autonomous Attendance System using Convolution Neural Networks An Effective Implementation of Autonomous Attendance System using Convolution Neural Networks Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org Retrieval Number: 100.1/ijitee.G99530611722 DOI: 10.35940/ijitee.G9953.0611722 Journal Website: www.ijitee.org 6
https://openalex.org/W2951358217
https://discovery.ucl.ac.uk/10073016/1/Anderson_0269216319852007.pdf
English
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Communication between healthcare professionals and relatives of patients approaching the end-of-life: A systematic review of qualitative evidence
Palliative medicine
2,019
cc-by
11,994
2007 PMJ0010.1177/0269216319852007Palliative MedicineAnderson et al. 2007 PMJ0010.1177/0269216319852007Palliative MedicineAnderson et al. Review Article https://doi.org/10.1177/02692163198520 Palliative Medicine 2019, Vol. 33(8) 926­–941 © The Author(s) 2019 Article reuse guidelines: sagepub.com/journals-permissions DOI: 10.1177/0269216319852007 journals.sagepub.com/home/pmj Keywords Keywords Communication, terminal care, palliative care, family, caregivers, qualitative research What is already known about the topic? •• Poor communication from healthcare professionals is a common complaint from relatives of patients at the end-of-life. •• Communication with relatives at this time is important for high quality end-of-life care and for relatives’ long-term well-being. 1Marie Curie Palliative Care Research Department, Division of Psychiatry, University College London, London, UK 2Department of Language and Cognition, Division of Psychology and Language Sciences, University College London, London, UK Corresponding author: Rebecca J Anderson, Marie Curie Palliative Care Research Department, Division of Psychiatry, University College London, 6th Floor, Maple House, 149 Tottenham Court Road, London W1T 7NF, UK. Email: rebecca.anderson.16@ucl.ac.uk Communication, terminal care, palliative care, family, caregivers, qualitative research Abstract Background: Effective communication between healthcare professionals and relatives of patients approaching the end-of-life is vital to ensure patients have a ‘good death’. To improve communication, it is important to first identify how this is currently being accomplished. p Aim: To review qualitative evidence concerning characteristics of communication about prognosis and end-of-life care between healthcare professionals and relatives of patients approaching the end-of-life. Design: Qualitative systematic review (PROSPERO registration CRD42017065560) using thematic synthesis. Peer-reviewed, English language articles exploring the content of conversations and how participants communicated were included. No date restrictions were applied. Quality of included studies was appraised using the Joanna Briggs Institute Critical Appraisal Checklist for Qualitative Research. Data sources: An electronic database search of CINAHL, MEDLINE, PsycINFO and EMBASE was performed. , , y p Results: Thirty-one papers were included. Seven themes were identified: highlighting deterioration; involvement in decision- making, post-decision interactional work, tailoring, honesty and clarity, specific techniques for information delivery and roles of different healthcare professionals. Varied levels of family involvement in decision-making were reported. Healthcare professionals used strategies to aid understanding and collaborative decision-making, such as highlighting the patient’s deterioration, referring to patient wishes and tailoring information delivery. Doctors were regarded as responsible for discussing prognosis and decision-making, and nurses for providing individualized care. Conclusion: Findings suggest training could provide healthcare professionals with these strategies to improve communication. Interventions such as question prompt lists could help relatives overcome barriers to involvement in decision-making. Further research is needed to understand communication with relatives in different settings and with different healthcare professionals. Communication between healthcare professionals and relatives of patients approaching the end-of-life: A systematic review of qualitative evidence https://doi.org/10.1177/02692163198520 Article reuse guidelines: sagepub.com/journals-permissions DOI: 10.1177/0269216319852007 journals.sagepub.com/home/pmj Rebecca J Anderson1 , Steven Bloch2, Megan Armstrong1 , Patrick C Stone1 and Joseph TS Low1 Introduction Family members of patients at the end-of-life value high quality communication about their relatives’ prognosis and care.1–4 Patients in the terminal phase of their illness often have difficulty communicating and so their relatives need clear information to make decisions on their behalf. Honest and timely communication can give relatives time to say goodbye and improve psychological outcomes and satisfaction with end-of-life care.5–10 Healthcare professionals report finding end-of-life communication challenging and often wait for patients or families to initiate these conversations.11 In an interna- tional survey of palliative care experts, 83% agreed more evidence-based guidance on strategies for communica- tion with relatives would improve end-of-life decision- making.12 A report by the English Parliamentary and Health Service Ombudsman found a key area of com- plaints about end-of-life care was failing to recognize when a person was dying and communicate this to the patient and their relatives.13 Implications for practice, theory or policy •• There is a need for more research on communication with relatives in palliative care settings and with different mem- bers of the multidisciplinary team. i i i d d h l h l h f i l l i i id li i i hil id •• There is a need for more research on communication with relatives in palliative care settings and with different mem- bers of the multidisciplinary team. •• Training is needed to help healthcare professionals to translate communication guidelines into practice while consider- i th i ti l d •• There is a need for more research on communication with relatives in palliative care settings and with different mem- bers of the multidisciplinary team. is needed to help healthcare professionals to translate communication guidelines into practice while consider own emotional needs. •• Interventions such as question prompt list could also be used to help relatives get the information they •• Interventions such as question prompt list could also be used to help relatives get the information they need. Recommendations about what to discuss with rela- tives are needed, alongside specific strategies on how to do this. Previous reviews have explored relatives’ commu- nication preferences and how they are prepared for the patient’s death more generally. They found a desire for honest information about disease progression, the dying process and pain management; jargon-free information with time to understand; and opportunities to discuss spiritual needs.16–20 However, these reviews did not focus on how healthcare professionals discuss these issues with relatives. To provide recommendations for change, we must first understand how this communication is cur- rently being accomplished. Healthcare professionals and relatives sometimes have different perceptions of how much prognostic information relatives have been given.21,22 It is therefore important to consider a range of perspectives when addressing this issue. What this paper adds •• Common communication strategies are identified including highlighting the patient’s deterioration to aid decision-mak- ing, references to patient wishes, providing relatives with options, tailoring information to individuals and using pacing and staging of information. •• Common communication strategies are identified including highlighting the patient’s deterioration to aid decision-mak- ing, references to patient wishes, providing relatives with options, tailoring information to individuals and using pacing and staging of information. •• Healthcare professionals state a belief in using honest, direct language and involving families in decision-making, but there is variation in the extent to which this is implemented in practice. •• Healthcare professionals state a belief in using honest, direct language and involving families in decision-making, but there is variation in the extent to which this is implemented in practice. •• Nurses and allied healthcare professionals play an important role in providing individualized comm relatives. •• Nurses and allied healthcare professionals play an important role in providing individualized communication with relatives. Objectives The primary objective of this article is to review existing qualitative evidence about the characteristics of commu- nication about prognosis and end-of-life care between healthcare professionals and relatives of patients approaching the end-of-life: In response to criticisms of end-of-life care in the United Kingdom, the National Institute for Health and Care Excellence (NICE) have produced guidelines for healthcare professionals, including advice on communica- tion.14 NICE make recommendations including discussing what patients understand and want to know, explaining uncertainty, avoiding false optimism, providing opportu- nities to ask questions and highlighting opportunities for further discussions. Bernacki and Block15 made similar recommendations for a conversation guide to support cli- nicians in the United States. However, the primary focus of these recommendations is communication with patients rather than relatives. While these recommenda- tions can be useful for relatives, their communication needs are different. For example, a previous review found caregivers wanted more information about the dying pro- cess than patients.16 From the perspective of healthcare professionals; From the perspective of relatives; From the perspective of relatives; As identified from observational studies. As identified from observational studies. What is already known about the topic? •• Poor communication from healthcare professionals is a common complaint from relatives of patients at the end-of-life. •• Communication with relatives at this time is important for high quality end-of-life care and for relatives’ long-term ll b i •• Poor communication from healthcare professionals is a common complaint from relatives of p end-of-life. •• Communication with relatives at this time is important for high quality end-of-life care and for relat well-being. 1Marie Curie Palliative Care Research Department, Division of Psychiatry, University College London, London, UK 2Department of Language and Cognition, Division of Psychology and Language Sciences, University College London, London, UK Corresponding author: Rebecca J Anderson, Marie Curie Palliative Care Research Department, Division of Psychiatry, University College London, 6th Floor, Maple House, 149 Tottenham Court Road, London W1T 7NF, UK. Email: rebecca.anderson.16@ucl.ac.uk Anderson et al. 927 Method An initial scoping of the literature suggested only qualita- tive literature could explore what happens during these conversations in sufficient depth. A qualitative systematic review was therefore conducted. Palliative Medicine 33(8) 928 were only included in the synthesis if they were supported with illustrative quotes. Search strategy A comprehensive electronic database search was last updated on 16 July 2018. The databases searched were CINAHL plus (1937–2018), MEDLINE (1950–2018), PsycINFO (1967–2018) and EMBASE (1980–2018). Text and MeSH terms for the following word groups were searched: communication, relatives, healthcare profes- sionals, settings with patients at the end-of-life and quali- tative methodology. Searches included peer-reviewed, English language articles, and there were no search restrictions based on the date of publication (see full elec- tronic search strategy in Supplementary Table 1). Reference lists of all included studies were hand-searched and citation searching was performed. Reference lists of five relevant reviews were hand-searched.16,17,19,20,23 Data extraction and synthesis The following data were extracted by R.A. and checked by M.A.: title, authors, year, journal, country, setting, research question/aims, theoretical/philosophical per- spective, research methodology, data collection/analysis, study population and relevant findings. Only findings rel- evant to the aim of this review were extracted. For exam- ple, one study26 included findings related to physicians’ beliefs on children’s best interests. These were not extracted but all findings relating to communication with parents were. Findings, including participant quotes and authors’ descriptions/interpretations, were entered into NVivo 11. Thematic synthesis, which allows conclusions to be drawn across heterogeneous methodologies, was used to syn- thesize findings. Thomas and Harden’s27 steps of thematic synthesis were followed, beginning with line-by-line cod- ing of findings. Initial codes were grouped into descriptive themes and put into a coding framework, which was applied to the whole dataset. These themes were dis- cussed within the team to develop analytic themes. For example, descriptive themes ‘problem listing’ and ‘per- spective display invitations’ both highlighted a patient’s deterioration, and so this became an analytic theme. Study selection The lead author (R.A.) ran the searches, removed dupli- cates and screened titles and abstracts to exclude ineligi- ble papers. Full texts of all remaining papers were reviewed for inclusion/exclusion by R.A. and M.A. Studies identified from the search had a broad range of research questions and so study selection was complex, requiring numerous decisions within the research team. For example, articles involving both relatives and patients were included only if the findings relating to relatives could be separated from those relating to patients. Disagreements and uncertainty were resolved through discussion and referral to a third reviewer, J.L. when required. R.A. coded findings with regular discussions with the analytic team, which included five researchers (three with Psychology backgrounds, one with a speech and language background and one palliative care consultant). An inter- pretivist approach was taken towards the synthesis, which involves providing narrative descriptions to represent the subjective experiences of a range of stakeholders.28 A broad range of populations and clinical settings were therefore included in the review and are presented together within the synthesis. Inclusion criteria included qualitative studies focusing on communication between adult relatives and health- care professionals, in settings with patients at the end-of- life, about prognosis and end-of-life care and exploring what and how communication occurs (as opposed to pref- erences or challenges). Authors were contacted when the eligibility of papers was unclear. A full list of inclusion and exclusion criteria is included in Supplementary Table 2. Quality appraisal results The main findings from the quality appraisal were the high number of articles which did not report a philosophi- cal perspective (22 articles), the researchers’ background (21 articles) or address the influence of the researcher on the research (21 articles). All studies used quotes to sup- port their analysis, but there were seven papers where it was unclear if an adequate range of participants’ views were represented, mostly due to a lack of patient identi- fiers. Ten papers did not report their analysis in a way that was wholly consistent with their stated methodology. The full results of the quality appraisal are reported in Supplementary Table 4. Search results The 10-item Joanna Briggs Institute (JBI) Critical Appraisal Checklist for Qualitative Research24 was used to assess the quality of included articles. While there is no ‘gold stand- ard’ tool for quality appraisal of qualitative studies, a com- parative analysis concluded the JBI checklist was the most coherent.25 The search strategy identified 2195 unique citations pub- lished between 1975 and 2018, 31 of which were included in the review (Figure 1). The 31 articles originated from 10 countries and reported results from 25 individual studies (see Table 1). Fourteen papers were observa- tional (non-participant observations or video/audio- recordings), 10 used interviews or focus groups with healthcare professionals, five used interviews with rela- tives and two used a combination of these approaches in ethnographic studies. The majority of studies were based in adult acute care (18 papers); eight were in paediatric or neonatal intensive care units (ICUs), three in palliative R.A. and M.A. assessed all studies against the JBI check- list. Disagreements were resolved through discussion and referral to other authors (J.L. or S.B.). The JBI checklist does not allocate scores to studies and papers were not excluded based on the checklist; instead, results were used to iden- tify weaknesses in the literature and considered when syn- thesizing the data. Authors’ descriptions/interpretations 929 Anderson et al. Figure 1. PRISMA diagram of included articles, adapted from Moher et al.29 Figure 1. PRISMA diagram of included articles, adapted from Moher et al.29 care settings and two in other settings (older adult wards and family physicians). family members with a median sample size of 27 (range = 12–227). The number of individual family mem- bers could not be obtained for five primary studies. These five studies reported a total sample size 92 families with a median sample size of 19 families (range = 8–36). Where reported, family members included parents, spouses, adult children, siblings, friends and other family members. Six primary studies reported including multiple different family members and five reported including parents only. Study participants Overall, sample sizes are reported below. In samples used for multiple papers, only the original sample size is included in this total. Further demographic information for study participants is included in Supplementary Table 3. Observational, ethnographic and interview/focus group studies with healthcare professionals had a total sample size of 343 healthcare professionals (170 physi- cians, 127 nurses, 9 other healthcare professionals, 37 unspecified), with a median sample size of 19 healthcare professionals (range = 1–37). Numbers of healthcare pro- fessionals were not reported for two primary observa- tional studies. Physicians were mostly attending, resident and fellow physicians, intensivists and palliative care con- sultants, although this information could not be obtained for five studies. Nurses worked in ICU, paediatric ICU, other acute care or hospice. Other healthcare profession- als such as social workers were also present at observa- tions but were not the focus of these observations. Two studies interviewed other healthcare professionals. Where reported, healthcare professionals’ years of clini- cal or specialty experience ranged from <2 to 40 years. Overview of findings Observational, ethnographic and interview studies with family members had a total sample size of 495 individual Included papers described how healthcare professionals and relatives discussed the patient’s deterioration, made 930 Palliative Medicine 33(8) y p p Author Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Observational studies Aldridge and Barton30a USA Compare the ‘description of current status’ in end-of-life discussions with family members that did and did not result in a change from therapeutic to comfort care Surgical ICU Critical care intensivists, surgeons and families of current SICU patients Secondary analysis of audio-recordings of family conferences Discourse analysis Highlighting negative outcomes and direct summaries implying terminal status led to more decisions to move to comfort care Decisions were less likely to be made when more positive outcomes were described and possible treatment was discussed Barton et al.31a USA 1. Describe the structure and variations within each phase of the end-of-life discussion 2. Look specifically at interaction between physicians and families within each phase Surgical ICU Critical care intensivists, surgeons and families of current SICU patients Secondary analysis of audio-recordings of family conferences Discourse analysis Description of current status used to develop consensus on terminal status. Some used perspective display questions. Framed decision as expressing patient’s wishes. Overview of findings If no consensus of terminal status was established, decisions were not made Explained logistics of dying (often initiated by family) with more direct language Barton32a USA Describe how physicians and families construct an ethical frame to present the decision to withdraw life support as the ‘right’ decision Surgical ICU Critical care intensivists, surgeons and families of current SICU patients Secondary analysis of audio-recordings of family conferences Discourse analysis Process of dying and comfort care repeated by doctors and families Doctors repeated problem listing and emphasized the decision as being a consensus between the medical team Families discussed personhood and consciousness – doctors repeated ‘best interests’ and described the decision as ethical because of loss of consciousness Both families and doctors described the decision as ‘right’ Curtis et al.33b USA Establish a framework that will allow future analyses and studies to describe and understand the communication in family conferences in which the issue of withholding or withdrawing life support is discussed ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Limited application of grounded theory Discussed substituted judgement: encouraged the family to describe personhood to elicit patient wishes Described the dying process (often raised by family) Stressed continuing care, patient comfort and supported decision to withdraw treatment Varied in directness and use of strategies (e.g. repeating what family says, allowing silence, confirming understanding) Curtis et al.34b USA Identify missed opportunities for physicians to provide support or information to families during family conferences ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Limited application of grounded theory 15/51 family conferences had examples of missed opportunities:  Some avoided answering difficult questions and didn’t ask for clarification about families’ vague concerns  Failed to explore/acknowledge expressions of emotion  Missed chances to explore comments about patient treatment preferences De Vos et al.35 Netherlands 1. How do physicians and parents communicate about decisions to withhold or withdraw life sustaining treatment 2. To what extent do parents share in the decision-making process? Paediatric ICU Physicians and parents of children currently in PICU Audio-recording of conversations Qualitative coding Discussed deterioration: 1/3 asked for parents’ perspective on child’s condition. Parents demonstrated good understanding when asked Physicians expressed a team preference. Parents often gave their preference unprompted Most presented as medical decision and didn’t ask parents. Overview of findings Parents expressed concern about suffering and physicians reassured them of comfort and peace Nurses often spoke with parents at the bedside after the meeting (not recorded) ICU Anderson et al. 931 son et al. Author Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Ekberg et al.36 Australia Explore how discussions about deterioration are managed within actual paediatric palliative care consultations Paediatric palliative care service (inpatient, outpatient, telehealth and home) Specialist palliative care consultant and parents of children in a paediatric palliative care service Video-recordings of consultations Conversation analysis Solicited the family’s agenda to allow opportunity for them to raise prognosis/deterioration Used topic shading (brought up another issue where deterioration may be relevant). This allowed the family to raise deterioration if they wished to Engelberg et al.37b USA Describe physicians’ responses to families’ questions about the meaning of critically ill patients’ movements ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Limited application of grounded theory 6/51 family conferences had unresolved questions about patient movement:  Majority responded with clinical information (physiological reasons)  Acknowledged emotions (e.g. with active listening)  Only one physician explored emotions and gave the family more time to consider Hsieh et al.38b USA Identify inherent tensions that arose during family conferences in the ICU, and the communication strategies clinicians used in response ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Qualitative content analysis from a dialectic perspective Contradictions identified included: killing versus allowing to die, death as benefit versus burden, patient wishes versus family wishes Physicians’ decision-centred strategies: argued against one side (e.g. killing), argued for one side (e.g. Overview of findings patient over family wishes) or avoided Physicians’ information-seeking strategies: acknowledged the contradiction, clarified family’s statements, emphasized patient wishes and segmented decision Kawashima39 Japan Explicate the structure of interactions between medical professionals and patients’ family members in a Japanese emergency room, when the patient is seriously ill and may be at the point of death Emergency room Physicians and family members of patients at risk of imminent death in an emergency room Video recordings of consultations Conversation analysis Storytelling: Physicians described what has happened or asked relatives what has happened to forecast bad news Online commentary: Physicians used sight and touch to explain symptoms Paradoxical proposals: Physicians sometimes put forward continuing treatment despite suggestion that treatment is Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Australia Explore how discussions about deterioration are managed within actual paediatric palliative care consultations Paediatric palliative care service (inpatient, outpatient, telehealth and home) Specialist palliative care consultant and parents of children in a paediatric palliative care service Video-recordings of consultations Conversation analysis Solicited the family’s agenda to allow opportunity for them to raise prognosis/deterioration Used topic shading (brought up another issue where deterioration may be relevant). This allowed the family to raise deterioration if they wished to USA Describe physicians’ responses to families’ questions about the meaning of critically ill patients’ movements ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Limited application of grounded theory 6/51 family conferences had unresolved questions about patient movement:  Majority responded with clinical information (physiological reasons)  Acknowledged emotions (e.g. with active listening)  Only one physician explored emotions and gave the family more time to consider USA Identify inherent tensions that arose during family conferences in the ICU, and the communication strategies clinicians used in response ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Qualitative content analysis from a dialectic perspective Contradictions identified included: killing versus allowing to die, death as benefit versus burden, patient wishes versus family wishes Physicians’ decision-centred strategies: argued against one side (e.g. killing), argued for one side (e.g. Overview of findings patient over family wishes) or avoided Physicians’ information-seeking strategies: acknowledged the contradiction, clarified family’s statements, emphasized patient wishes and segmented decision Japan Explicate the structure of interactions between medical professionals and patients’ family members in a Japanese emergency room, when the patient is seriously ill and may be at the point of death Emergency room Physicians and family members of patients at risk of imminent death in an emergency room Video recordings of consultations Conversation analysis Storytelling: Physicians described what has happened or asked relatives what has happened to forecast bad news Online commentary: Physicians used sight and touch to explain symptoms Paradoxical proposals: Physicians sometimes put forward continuing treatment despite suggestion that treatment is futile, giving time for families to make the decision or express deontic authority Physicians left sentences unfinished to allow for co-completion of final decision Following online commentaries/paradoxical proposals, families themselves sometimes raised the possibility of stopping treatment USA Examine the decision-making process to withhold or stop life support ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recordings of family conferences Conversation analysis Framing of options ‘shaded’ (e.g. not all options presented) in 6/15 cases Framed decision as consensus between healthcare professionals, the family and the patient’s wishes When couldn’t agree, gave family time to decide (but imposed time limit) USA Explore how clinicians introduce the need to make a decision about the use of life-sustaining treatment and how surrogates respond ICU Physicians and families of current ICU patients Audio-recordings of family conferences/ Conversation analysis Clinicians used ‘perspective-display invitations’ to elicit the surrogate’s view of patient preference – used this as basis for shared decision-making Direct questions were more successful than tacit invitations Perspective display invitations were reformulated when unsuccessful 932 Palliative Medicine 33(8) Author Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Shaw et al.42 UK Explore decision-making related to the move from active to palliative care in the neonatal ICU Neonatal ICU Consultants and families of babies currently in NICU Audio-recordings of discussions/ Conversation analysis Identified two different ways doctors initiated the decision- making process: 1. Making recommendations: Presented strong recommendation as coming from the medical team in the best interests of the baby. Parents often asked challenging questions, about options and responded negatively to explanations 2. Providing options: Presented as a joint plan for parents and doctors to make. Overview of findings Told parents the decision can be deferred and options for the decision were provided. Parents could ask questions without appearing challenging West et al.43b USA Identify the categories of expressions of non-abandonment and develop a conceptual model describing the ways this is expressed by families and clinicians, in ICU family conferences concerning withdrawing life-sustaining treatments or the delivery of bad news ICU Attending, resident and fellow physicians and families of current ICU patients Audio-recording of family conferences Limited application of grounded theory 44/51 family conferences contained expressions of non- abandonment from either the family or clinician:  Clinicians: Highlighted continuing care; emphasized physician availability; gave the family the choice of when treatment is removed  Family: expressed decision as reducing suffering and following patient wishes; expressed a desire to be at the bedside Family perspective Abib El Halal et al.44 Brazil Explore parents’ perspectives of the quality of care offered to them and their terminally ill child in the child’s last days of life Paediatric ICU Parents of children who died in PICU Interviews Thematic content analysis Parents reported healthcare professionals using medical jargon Decisions were communicated but families not involved Lack of communication around the time of death Gordon et al.45c USA Examine bereaved parents’ perspectives of their and clinicians’ communicative roles and responsibilities in the PICU Paediatric ICU Parents of children who died in PICU Secondary analysis of interviews Discourse analysis Varied in how much parents were included in decisions Some struggled to understand uncertainty. Clarity varied (e.g. medical jargon) Some felt clinicians created false hope by saying child was going to be ok Parents were sometimes ‘rude’ or shouted at clinicians Lind46 Norway Examine and describe relatives’ experiences of responsibility in the ICU decision-making process ICU Relatives of patients who died in ICU Secondary analysis of interviews Narrative analytical approach Three variants of involvement in decisions: 1. Informed not involved: families told of decision with a medical explanation 2. Informed and asked for approval (directly or waiting for a nod/yes) 3. Involved – shared decision-making: Discussed what the patient would want Meert et al.47c USA Describe parents’ perceptions of their conversations with physicians regarding their child’s terminal illness and death in the PICU Paediatric ICU Parents of children who died in PICU Secondary analysis of interviews Qualitative coding Honest communication built trust and prepared parents. Overview of findings Others held back prognostic information leading to false hope Honesty was either communicated with empathy which was appreciated or as ‘matter of fact’ which felt cold and insensitive Some felt healthcare professionals used medical jargon or too much information was given at once Odgers et al.48 Australia Explore the family’s experience of end- of-life care for their relative during the dying process Acute hospital Next of kin to patients who died in acute hospital Interviews Thematic analysis Some felt doctors were not clear and honest with them (e.g. used euphemisms and were indirect about prognosis) Others had open conversations including discussing patient wishes Table 1. (Continued) ICU Table 1. (Continued) Anderson et al. Overview of findings 933 Author Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Healthcare professional perspective Bach et al.49 Canada Bring to light the role of critical care nurses in decision-making at the end- of-life ICU and cardio- respiratory care unit Critical care nurses Interviews Grounded theory Nurses clarify information and help families see the whole picture Act as a go-between for the physicians and families Felt that honesty is important (but balanced with hope) Bartel et al.50 USA Describe physicians’ experiences in attempting to provide optimal care for families of children who suffer sudden, acute life threatening conditions Paediatric ICU Resident, attending and fellow PICU physicians Interviews and focus groups Qualitative coding Provide families with options and they make the final decision Denial common in families – physicians repeat information and give time Highlighted the role of nurses/social workers taking time with families Identify a family spokesperson Try to give clear summaries, non-medical language, staged information and not give false hope Bloomer et al.51 Australia and New Zealand Explore how nurses navigate communication with families during treatment withdrawal processes ICU Critical care nurses Focus groups Inductive content analysis Look for non-verbal cues that a relative does/doesn’t want to talk and verbal signs of understanding Identify a spokesperson Use staging of information to give families time to digest it Following family meetings check understanding and discuss the process of death Epstein52 USA Explore nurses’ and physicians’ end-of- life experiences in the new-born ICU New-born ICU NICU registered nurses, nurse practitioners and resident and fellow physicians Interviews Hermeneutic circle approach Physicians delayed conversations to give families time to understand patients’ terminal status Nurses felt false hope could be promoted Nurses informally/gently discussed options with parents in more detail Physicians begin more indirectly but use direct language if families don’t understand Explain what changes to expect in dying process Involve parents in decision but take responsibility themselves Kehl53 USA Describe how hospice clinicians prepare family for the final days of life Home hospice Nurses, nursing assistant, social workers, bereavement counsellors and chaplain Interviews Conventional content analysis Discuss signs/symptoms of death and time to death (including uncertainty) Repetition to ensure the message gets through, staged preparation over time Use active listening/questions to tailor content and delivery Building trust improves acceptance of messages Liaschenko et al.54 USA Understand factors that influence ICU nurses’ inclusion of families in end-of-life care Critical care unit Experienced critical care nurses Focus groups Content analysis Nurses bring together information from different physicians to provide the ‘big picture’. Overview of findings Draw attention to quality of life consequences of treatment Highlight deterioration and prepare families for death Peden- McAlpine55 USA Describe the communication practices experienced intensive care nurses use with families to negotiate consensus on withdrawal of aggressive treatment and/ or shift to palliative care ICU ICU nurses comfortable with dying patients/ families Unstructured interviews Narrative approach Changes in the patient’s status can a trigger conversations Nurses check understanding and explain consequences of treatment after discussions with physicians Ask about the patient, emphasize quality of life and what they would want Help families see deterioration. Tailor to what the person is ready to hear 934 Palliative Medicine 33(8) Author Country Research question/aim Setting Population Data collection Data analysis Summary of relevant findings Rejno et al.56 Sweden Deepen the understanding of stroke team members’ reasoning about truth- telling in end-of-life care due to acute stroke Acute stoke ward Physicians, registered nurses and enrolled nurses Interviews Qualitative content analysis Truth above all: approach discussions with complete honesty and direct language to prepare them and establish trust Hide truth to protect: Withhold certain distressing information if don’t feel it’s necessary to tell; wait until have clearer info/ better environment to discuss; some nurses waited for doctor to give the bad news Richards et al.26 USA Understand how neonatal and paediatric critical care physicians balance and integrate the interests of the child and family in decisions about life-sustaining treatments Paediatric and Neonatal ICU Attending paediatric critical care physicians Interviews Content and thematic analysis Limiting options: don’t mention treatment options that they believe to be futile Being directive: when feel parents can’t make decisions, physicians take control to relieve burden and give families ‘permission’ to remove life support Staying neutral: by providing options and avoiding giving own opinion Allowing parents to come to own conclusions (e.g. Highlighting deterioration The first theme identified was highlighting deterioration, which was found in 11 papers.26,30–32,35,36,39,54,55,58,59 This describes how healthcare professionals enabled relatives to recognize the patient’s deterioration (referred to as ‘establishing terminal status’ by one study30). Highlighting deterioration involved listing the patient’s previous and ongoing problems to provide evidence that further active treatment was futile and the patient was reaching the end-of-life. Often this was accomplished by healthcare professionals, but studies also found evidence of perspec- tive display invitations,62 where healthcare professionals asked relatives to describe what had happened so far and how the patient was doing.31,32,35,36,39,55,58,59 Perspective display invitations highlighted deterioration in collabora- tion with families and provided healthcare professionals with information about their level of acceptance and understanding. p Collaborative decision-making was reported across observational studies and interviews/focus groups with healthcare professionals and relatives, and in both child and adult settings.26,30–33,35–43,45–50,52,55,57 When papers reported collaborative decision-making, several strategies were used. In adult settings only, the most common iden- tified was invoking the patient’s wishes.31–33,38,40–42,46–49,55 Healthcare professionals asked families what the patient was like prior to hospitalization and whether they had dis- cussed their care preferences. They emphasized the fam- ily member was a voice for the patient, rather than making decisions based on their own feelings. There were, how- ever, examples in observational studies and one nurse interview study, where doctors missed opportunities to discuss patients’ wishes or did not clarify the meaning of surrogate decision-making.33,34,46 Usually, this phase ended with a summary statement to demonstrate they had reached a consensus that the patient was dying. However, one study described more ambiguous problem listing, including references to treat- ment. In these conversations, a consensus on terminal status was less likely to be reached and decisions relating to withdrawal of treatment were made less often.30 Another strategy was presenting options to the family (e.g. to remove some life-sustaining treatments and leave others in place) and framing the discussion as forming an evolving plan, rather than one overall deci- sion.26,35,38–40,42,50,52 Options could be presented with a subtle preference for a certain course of action,40 but it was stressed the family’s decision would be supported. Overview of findings delay decisions/discussions and give time so that parents can see that their child is dying) Tan and Manca57 Canada Describe conflict experiences that family physicians have with substitute decision- makers of dying patients and identify factors that facilitate or hinder the end- of-life decision-making process Family physicians Family physicians Interviews Grounded theory Staged information as trust increases; gauge surrogate’s understanding; use patient’s previous statements to help decisions Bringing other professionals in can help resolve conflict Mixed perspectives Caswell et al.58 UK Understand the factors and processes which affect the quality of care provided to frail older people who are dying in hospital and their family carers Hospital wards caring for older adults Healthcare professionals and bereaved relatives of older patients who died Ethnographic: interviews, focus groups, non-participant observations and review of case notes Constant comparative method Doctors discussed prognosis, nurses translated into lay language Staff thought often one conversation wasn’t enough but didn’t always repeat this Observations showed it was rare to explain process of dying Euphemistic/vague language meant carers didn’t always understand that their relative was dying Meeker et al.59 USA Examine the nature of family meetings as conducted in an inpatient hospice care unit in order to generate an inductive theoretical model Hospice inpatient unit Nurses, social workers, physicians and family members of current hospice inpatients Ethnographic: observations of family meetings, informed by healthcare professional interviews Constant comparative method of grounded theory Healthcare professionals elicited understanding to ensure their views were aligned on prognosis (e.g. discuss prior symptoms that signal dying). Families described patient’s personhood Explained process of dying, paced info in line with family responses Separated the person from the illness (e.g. explaining agitation), gave time to ask questions SICU: surgical intensive care unit, ICU: intensive care unit, PICU: paediatric intensive care unit, NICU: neonatal intensive care unit. Detailed demographic information is provided in Supplementary Table 3 and quality appraisal information in Supplementary Table 4. aPapers using data from Cassell.60 bPapers using data from Curtis et al.33 cPapers using data from Meert et al.61 ( ) y SICU: surgical intensive care unit, ICU: intensive care unit, PICU: paediatric intensive care unit, NICU: neonatal intensive care unit. Detailed demographic information is provided in Supplementary Table 3 and quality appraisal information in Supplementary Table 4. aPapers using data from Cassell.60 935 Anderson et al. Highlighting deterioration Families were given time to make decisions and if with- drawing treatment, control over how and when this would happen.33,37,39,42,43,46 These practices were mostly identi- fied by observational studies,33,37–40,42,43 but some rela- tives described the same practices35,46 and healthcare professionals reported providing options.26,50,52 The practice of highlighting deterioration was identi- fied in healthcare professional interview and focus group studies54,55,58,59 and observational studies,30–32,35,36,39,59 but not interviews with families. It was seen in adult and paediatric settings, but was not always consistent. For example, in an ethnographic study on older adult wards, only one healthcare professional described this practice and there was no evidence of it from non-participant observations.58 Overview of findings a recommendation for families to agree with previous studies26,42,45,46,52) or a collaborative process where the family made the final decision. Reports of less collabora- tive decision-making were more common in paediatric set- tings and were found mostly by observational studies35,42 and those interviewing family members.44–46 Healthcare professionals rarely described non-collaborative decision- making, but in two healthcare professional interview stud- ies, some described taking responsibility for decisions to relieve burden for families.26,52 While this could be helpful when families felt unable to make decisions, it could cause interactional difficulties. Where healthcare professionals presented recommendations, family members often pas- sively agreed, without always receiving clear information about the reason for the decision. At other times, family members objected to the decision. One conversation ana- lytic study42 described how giving recommendations made it difficult for families to ask questions as they came across as challenging the medical team’s opinion. However, there was evidence of families actively involving themselves in these conversations by asking questions and expressing preferences.32,35,39,42,45 decisions and the interactional work accomplished by both parties following decisions. Papers identified com- municative practices from healthcare professionals and family members and the roles different healthcare profes- sionals played in communication. The synthesis identified seven key themes to describe this communication: high- lighting deterioration, involvement in decision-making, post-decision interactional work, tailoring, honesty and clarity, specific techniques for information delivery and roles of different healthcare professionals. Supplementary Table 5 provides extracts from original papers demon- strating these themes. Involvement in decision-making Varied levels of family involvement in patient care deci- sions were identified, particularly relating to withdrawal of treatment. The reported styles of involvement can be divided into presenting the medical team’s decision (either as what has already been decided35,44–46 or Honesty and clarity One of the most varied findings was healthcare profes- sionals’ honesty and clarity. Healthcare professionals described the need to use direct, simple language to pro- mote understanding.26,50,56 However, while some families agreed straightforward information was given,47 others described not understanding information due to techni- cal or ambiguous language.44,45,48 In observational stud- ies, healthcare professionals’ language varied in its level of directness.30,31,33,40,42,48 In interviews, they highlighted the difficult balance between being honest and allowing families hope, mostly emphasizing the need to avoid false hope and be honest to build trust with fami- lies.49,50,52,54,56 However, nurses reported that doctors sometimes felt the need to ‘try everything’ and this could lead to false hope for families and unnecessary, aggres- sive treatments for patients.52 In line with this, several families reported feeling they had been given false hope because of a lack of honest communication.44,45,47,48,58 In one interview study, some relatives realized when look- ing back that healthcare professionals had tried to inform them their relative was dying, but said that they had not fully understood at the time,58 suggesting possible ambi- guity on the part of the healthcare professional. Others felt healthcare professionals had been ‘blunt’ or ‘cold’ in their communication.45,47,48,58 One of the most varied findings was healthcare profes- sionals’ honesty and clarity. Post-decision interactional work Observational studies and healthcare professional inter- views reported that healthcare professionals emphasized 936 Palliative Medicine 33(8) the continued care of the patient33,35,43,47,57,59 (described in one study as ‘expressing non-abandonment’43), par- ticularly following decisions to withdraw active treat- ment. Healthcare professionals stressed they would ensure the patient was comfortable, explained what would happen next and reassured families they would be available for further discussions. There were how- ever reports from families44,58 and some observations43 of healthcare professionals failing to do this and where it appeared to families that healthcare professional involvement would reduce following the move to com- fort care. the continued care of the patient33,35,43,47,57,59 (described in one study as ‘expressing non-abandonment’43), par- ticularly following decisions to withdraw active treat- ment. Healthcare professionals stressed they would ensure the patient was comfortable, explained what would happen next and reassured families they would be available for further discussions. There were how- ever reports from families44,58 and some observations43 of healthcare professionals failing to do this and where it appeared to families that healthcare professional involvement would reduce following the move to com- fort care. Honesty and clarity Healthcare professionals described the need to use direct, simple language to pro- mote understanding.26,50,56 However, while some families agreed straightforward information was given,47 others described not understanding information due to techni- cal or ambiguous language.44,45,48 In observational stud- ies, healthcare professionals’ language varied in its level of directness.30,31,33,40,42,48 In interviews, they highlighted the difficult balance between being honest and allowing families hope, mostly emphasizing the need to avoid false hope and be honest to build trust with fami- lies.49,50,52,54,56 However, nurses reported that doctors sometimes felt the need to ‘try everything’ and this could lead to false hope for families and unnecessary, aggres- sive treatments for patients.52 In line with this, several families reported feeling they had been given false hope because of a lack of honest communication.44,45,47,48,58 In Families also displayed their commitment to their relatives’ continued care by discussing the patient’s comfort and emphasizing their continued presence, often wanting to be with the patient when they die.32,35,43 Observational studies found families asked questions about patients’ consciousness and awareness, the dying process and what to expect.31–33,37 Healthcare profes- sionals were generally forthcoming with this informa- tion,31–33,47,52,53,59 but there were some reports from observational studies where details about the dying pro- cess from healthcare professionals were lacking.33,58 Only two articles (from the same observational study) described how healthcare professionals responded to families’ displays of emotions, finding such displays were rarely explored in depth.34,37 one interview study, some relatives realized when look- ing back that healthcare professionals had tried to inform them their relative was dying, but said that they had not fully understood at the time,58 suggesting possible ambi- guity on the part of the healthcare professional. Others felt healthcare professionals had been ‘blunt’ or ‘cold’ in their communication.45,47,48,58 Observational studies and one study interviewing nurses reported both healthcare professionals and fami- lies justified decisions to withdraw life-sustaining treat- ments as ‘right’.31–33,38,43,55 They repeated medical justifications for the decision and referred to patients’ wishes. Healthcare professionals often referenced their medical knowledge and experience32,33 and stressed they were allowing the patient to die, not having an active role in the death.38,43 Specific techniques for information delivery Various communicative techniques used by healthcare professionals were reported in observational studies and interviews with healthcare professionals, but not inter- views with families. Repetition was used both within con- versations and across several conversations to ensure families’ understanding.32,33,35,50,53 Healthcare profession- als repeated information or asked relatives to summarize what they had been told. Repetition was also used towards the end of conversations, for example, informa- tion about patients’ deterioration was repeated to justify decisions to remove life-sustaining treatment later on in conversations.32 However, in a study in older adult hospi- tal wards, healthcare professionals acknowledged the need to repeat information but explained they were reluc- tant to have this conversation a second time.58 als repeated information or asked relatives to summarize what they had been told. Repetition was also used towards the end of conversations, for example, informa- tion about patients’ deterioration was repeated to justify decisions to remove life-sustaining treatment later on in conversations.32 However, in a study in older adult hospi- tal wards, healthcare professionals acknowledged the need to repeat information but explained they were reluc- tant to have this conversation a second time.58 Roles of different healthcare professionals in communication systematic review found having awareness of the patient’s treatment preferences reduced negative emotional effects for surrogate decision-makers.63 Therefore, orient- ing relatives to patient wishes may have long-term bene- fits beyond the conversation itself. However, references to patient wishes did not occur in paediatric end-of-life care. Healthcare professionals cannot ask parents what their child would want or whether they have had conversations about end-of-life decisions, particularly in neonatal set- tings. Perhaps, as a result of not being able to refer to patient wishes, most examples of less collaborative deci- sion-making occurred in paediatric settings. However, there was evidence that collaboration could be achieved in these settings by consulting parents whenever deci- sions were made and providing them with options and time to make plans. Given recent high profile court cases in the United Kingdom involving end-of-life decision-mak- ing in paediatric end-of-life care,64,65 pressure and scrutiny on healthcare professionals communicating difficult deci- sions to families in these settings is particularly high. The collaborative communicative strategies described in this review could be valuable for these healthcare profession- als and should be further researched and put into practice through training. The review looked at a range of healthcare professionals and found different communication roles for different professions. Doctors were often seen by both healthcare professionals and relatives as responsible for conducting prognostic and decision-making conversations with fam- ily members,50,56,58 although when death was imminent, nurses sometimes had these conversations.35,58 While no observational studies focused primarily on nurse com- munication, in interviews both physicians and nurses rec- ognized the importance of nurses communicating with families on a more personal, individualized level.33,35,49– 51,54,55 Nurses often reported translating what doctors had said into less technical language.49,54,55,58 Nurses highlighted their role in giving patients a clearer idea of what treatments would mean for the individual patient and bringing together information from different sources.46,49,54,55 This role was termed providing ‘the big picture’ in one study.54 Nurses also reported encouraging physicians to have discussions with families.49,52,55 These roles of nurses were mostly identified in observational studies and those interviewing healthcare professionals, but in one study families also reported that nurses made things easier to understand.44 Other allied health profes- sionals, particularly social workers, were identified as playing important roles in communication with rela- tives,53,59 but included studies focused primarily on doc- tors and nurses. Tailoring Healthcare professionals reported and were observed to tailor their communication to individual fami- lies.33,36,38,50–53,55,57,59 Healthcare professionals gauged levels of understanding and willingness to discuss dying through questions and observing verbal and non-verbal cues from families.38,50,55,57,59 The content, delivery and timing of communication was tailored to families’ pre- vious experiences of death, levels of understanding, desire for information and the patient’s current symp- toms.36,38,51–53,55,59 Healthcare professionals were also observed to take into account different cultural and religious backgrounds of families.33 Some healthcare professionals reported identifying a spokesperson for each family to ensure information was effectively com- municated to the whole family at a level of detail with which individuals were comfortable.50,51 Pacing and staging of information were identified as other communicative strategies.26,33,50,51,53,55–57 This included allowing time for information to be taken in within a conver- sation, giving smaller chunks of information across several conversations when the family was ready to hear it, or delaying giving information until appropriate support could be provided to families. healthcare professionals also described postponing decisions to allow parents time to see for themselves their child was dying.52,56 Staging was not always possible however, especially if the patient had a sud- den deterioration necessitating a timely conversation.53 937 Anderson et al. Roles of different healthcare professionals in communication Other common communicative practices identified, including repetition, pacing and staging, and highlight- ing continuing care are in line with relative’s prefer- ences for receiving detailed information and time to understand this.16–20 Healthcare professionals also rec- ognized the need for simple, direct language and hon- esty, which have been identified as key relative preferences16–20 and recommended in guidelines.14,15 However, there was evidence of a struggle to balance honesty and hope. This finding demonstrates that while guidelines are a useful start, training on how to imple- ment them in practice is vital to improve communica- tion. Healthcare professionals have reported emotional support needs relating to end-of-life communication, so any intervention should also consider implementing organizational changes to allow reflective practice in a supportive environment.66 Contributions of different qualitative approaches Observational studies, those focusing on healthcare pro- fessional perspectives and those exploring relatives’ per- spectives, all provided valuable findings. However, each approach had strengths and weaknesses in addressing the article’s aim. Interviews with family members contributed more towards understanding the content of conversa- tions than how communication was actually accom- plished. This is unsurprising as relatives are less likely to have considered their communicative practices than healthcare professionals who regularly have these con- versations. In comparison, healthcare professionals had insights into how they communicate in this context and provided information about communication beyond a sin- gle conversation (e.g. spacing information over several conversations). Different healthcare professionals also had insight into each other’s practice, for example, nurses highlighted that doctors sometimes gave families false hope. However, there may be communicative behaviours healthcare professionals are not conscious of. Interviews are also limited by participants’ ability to accurately remember these conversations and recollections are sub- ject to their own interpretations. The review process also has a number of limitations. The search strategy only included English language arti- cles for resource reasons. As a result, 29 of 31 included articles were from Northern European or English-speaking countries, with 19 from the United States alone. Cultural differences in communication practices are likely and so findings from this review may not be generalizable to other cultures. The review was limited to qualitative studies to gain in-depth insights into how people communicate not accessible through quantitative methods such as surveys. However, qualitative findings are subject to researchers’ interpretations, both in the original studies and during the synthesis. We have aimed to increase rigour in this review through multiple team members independently assessing quality, team discussions during data extraction and synthesis and by reporting our synthesis process transparently. The search strategy took a broad approach, including studies from a range of patient populations, places of care and methodological approaches. This approach was taken because the review was exploratory and initial scoping of the literature found practices and experiences that applied across different settings. We have highlighted some of the differences between these settings and approaches, but a narrower search strategy would have allowed a more in-depth view of individual settings. Observational studies show what actually happened with the most accuracy, particularly those using audio- or video-recording. Key findings and implications This review has focused on the content and communica- tive practices in end-of-life conversations about prognosis and care between healthcare professionals and relatives. We have identified common practices reported in the qualitative literature and variation in these practices within and across studies. Healthcare professionals used problem listing, includ- ing eliciting relatives’ perspectives, to highlight patients’ deterioration. NICE guidelines14 and Bernacki and Block’s15 review both suggest prognostic disclosure and exploring patients’ understanding are important ele- ments to be addressed by healthcare professionals. It fol- lows that the same should apply when communicating with relatives. The practice of highlighting deterioration is a collaborative communication strategy that could be used by other healthcare professionals to meet these recommendations. Further recommendations from Bernacki and Block’s15 review include focusing on quality of life and assessing what trade-offs are acceptable to patients when making treatment decisions. The review identified nurses as key to facilitating this individualized decision-making. Doctors were responsible for prognostication and decision-mak- ing, while nurses helped families understand their options in the context of individual patients’ lives. A recognition of this important role of nurses is needed, and involving them more formally in decision-making may help pro- mote shared decision-making in line with recommenda- tions. While there was little focus on acknowledging spiritual needs in the included articles, relatives have highlighted this as important18,19 and the nurse role in The involvement of relatives within the decision-mak- ing process was varied. Invoking patient wishes was often used for collaborative decision-making. A previous 938 Palliative Medicine 33(8) individualized care could put them in a good position to address these needs. into the influence of the researchers on the findings. Without stating the study’s philosophical perspective or the potential impact of researchers, it is difficult to know how the research team’s characteristics may have influ- enced data collection and analysis. In addition, not all studies reported numbers or demographics for individ- ual healthcare professionals or family members, making it difficult to understand who was involved in these conversations. Future research The majority of studies in this review were in acute care settings. It was not possible to compare the findings from acute settings with palliative care, as there were only three palliative care papers, all in different settings (adult inpatient, adult home hospice and paediatric consulta- tions). However, we can speculate that there are likely to be differences between these settings. The papers in acute settings mostly focused on medical decision-mak- ing, particularly withdrawing life-sustaining treatments. In palliative care, these conversations are likely to take place earlier in the disease trajectory and with the patients themselves. By the point of end-of-life care, decision- making conversations will therefore be less common. Family members may have more realistic expectations, particularly in a hospice setting, as hospice inpatient wards generally only admit patients with terminal or life Contributions of different qualitative approaches However, there are limits to what obser- vations can tell us, for example, these studies could not assess whether clinicians were providing honest informa- tion or giving false hope. These studies are also unlikely to observe every conversation a healthcare professional has with relatives and therefore can only capture a snapshot of this communication. These different approaches revealed differing perspec- tives on the same experiences. For example, healthcare professionals often described giving detailed information clearly and honestly, but this was not always seen in observations or reported by families. Any clinician training should therefore help healthcare professionals recognize when families have not understood them and avoid assumptions of existing knowledge. Each qualitative approach provides its own benefits and should be com- bined to get a fuller picture of how communication with relatives is accomplished at the end-of-life and inform effective training. Limitations of primary studies and systematic review The main limitations of included articles identified through quality appraisal were related to a lack of insight 939 Anderson et al. strategies to improve understanding and collaborative decision-making in their practice. limiting conditions and do not provide curative treatment. Healthcare professionals in palliative care settings may also have more experience of end-of-life communication and more time with families. This is reflected in higher satisfaction and lower unmet needs of families in hospice compared with hospital settings.67 Further palliative care research is therefore needed, particularly in hospices at the very end-of-life when patients are likely to have reduced capacity and so conversations will primarily be taking place with relatives. The experience and expertise of hospice clinicians could provide communication strate- gies that could be applied in other settings. Funding The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This systematic review was carried out as part of a PhD funded by the Marie Curie Chair in Palliative and End of Life Care grant (grant MCCC-FCH-13-U). PS and RA’s posts are supported by the Marie Curie Chair in Palliative and End of Life Care grant funding; JL’s post is supported by the Marie Curie core and programme grant funding (grants MCCC-FCO-16-U and MCCC-FPO-16-U). The funder played no role in the collection, analysis and inter- pretation of data, in the writing of the report or in the decision to submit the article for publication. Conclusion Healthcare professionals use a range of practices that could aid effective communication with relatives at the end-of-life. Key strategies include highlighting the patient’s deterioration to aid understanding and deci- sion-making, collaborative decision-making through ref- erences to patient wishes and providing options, highlighting continuing care by explaining comfort care, tailoring information to individual understanding and readiness to discuss dying; honesty and clarity to avoid false hope and providing information repeatedly and in small chunks. This systematic review calls for further research to identify the effectiveness of different com- municative strategies. This research should be used to develop training for healthcare professionals to help them understand relatives’ perspectives and implement Acknowledgements The authors would like to acknowledge Marie Curie for provid- ing funding for the UCL Marie Curie Palliative Care Research Department. P.S., M.A. and J.L. are supported by the University College Hospital National Institute for Health Research Biomedical Research Centre. The authors are grateful to the librarians at the University College London Language & Speech Science Library for their help in developing the search strategy and to Bridget Candy for methodological advice. Interviews and focus groups with nurses provided insights into their roles and communicative strategies. However, no observational studies focused primarily on nurses. This may be due to these conversations being more spontaneous than those held by doctors, and therefore more difficult to capture in a research project. Observational research focused on nurses could provide practice recom- mendations for all healthcare professionals. Research into the communication of allied healthcare professionals such as social workers is also needed to develop a fuller picture of communication with relatives at the end-of-life. Declaration of conflicting interests The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article. Data sharing and management More focus on how relatives communicate in these conversations is needed. While there were some refer- ences to how relatives communicated, the primary focus of existing literature is healthcare professionals’ communi- cation. Future research should identify how relatives com- municate their perspectives, ask questions and respond to different healthcare professional communication prac- tices. This would provide evidence for which strategies are effective and help healthcare professionals recognize how families might express things such as a desire for further information. This evidence could also be used in interven- tions to empower families to express their perspectives and ask questions to elicit the information they want and need, for example, using question prompt lists.68 The full search strategy, inclusion/exclusion criteria, quality appraisal results and example extracts demonstrating the review’s themes are available in the Supplementary material. This review is registered on the PROSPERO database (registra- tion number CRD42017065560). Author Contributions R.A., S.B., P.S. and J.L. were responsible for the study con- cept and design; R.A., M.A. and J.L. were responsible for the acquisition, analysis and interpretation of the data. R.A. drafted the article; S.B., M.A., P.S. and J.L. revised it critically for important intellectual content. All authors approved the version to be published and have partici- pated sufficiently in the work to take public responsibility for appropriate portions of the content. Supplemental material Supplemental material for this article is available online. References withdrawal of life-sustaining treatment in intensive care. J Adv Nurs 2017; 73(1): 39–55. 1. Kirk P. What do patients receiving palliative care for can- cer and their families want to be told? A Canadian and Australian qualitative study. BMJ 2004; 328: 1343. 18. Docherty A, Owens A, Asadi-Lari M, et al. Knowledge and information needs of informal caregivers in palliative care: a qualitative systematic review. Palliat Med 2008; 22(2): 153–171. 2. Nelson JE, Puntillo KA, Pronovost PJ, et  al. In their own words: patients and families define high-quality palliative care in the intensive care unit. Crit Care Med 2010; 38(3): 808–818. 19. Loke AY, Li Q and Man LS. Preparing family members for the death of their loved one with cancer: a review of litera- ture and direction for future research. J Hosp Palliat Nurs 2013; 15: E1–E11. 3. Steinhauser KE, Voils CI, Bosworth H, et al. What constitutes quality of family experience at the end of life? Perspectives from family members of patients who died in the hospital. Palliat Support Care 2014; 13: 945–952. 20. Lowey SE. Communication between the nurse and family caregiver in end-of-life care: a review of the literature. J Hosp Palliat Nurs 2008; 10: 35–48. 4. Virdun C, Luckett T, Davidson PM, et al. Dying in the hos- pital setting: a systematic review of quantitative studies identifying the elements of end-of-life care that patients and their families rank as being most important. Palliat Med 2015; 29(9): 774–796. 21. Hancock K, Clayton JM, Parker SM, et al. Discrepant per- ceptions about end-of-life communication: a systematic review. J Pain Symptom Manage 2007; 34(2): 190–200. 22. Witkamp FE, van Zuylen L, Vergouwe Y, et al. Concordance between experiences of bereaved relatives, physicians, and nurses with hospital end-of-life care: everyone has their ‘own truth’. Int J Palliat Care 2015; 2015: 623890. 5. Wright AA, Zhang B, Ray A, et  al. Associations between end-of-life discussions, patient mental health, medical care near death, and caregiver bereavement adjustment. JAMA 2008; 300(14): 1665–1673. 23. Noome M, Beneken Genaamd Kolmer DM, van Leeuwen E, et al. The nursing role during end-of-life care in the inten- sive care unit related to the interaction between patient, family and professional: an integrative review. Scand J Caring Sci 2016; 30(4): 645–661. 6. Nielsen MK, Neergaard MA, Jensen AB, et al. Predictors of complicated grief and depression in bereaved caregivers: a nationwide prospective cohort study. References J Pain Symptom Manage 2017; 53(3): 540–550. 24. Lockwood C, Munn Z and Porritt K. Qualitative research synthesis: methodological guidance for systematic review- ers utilizing meta-aggregation. Int J Evid Based Healthc 2015; 13(3): 179–187. 7. Kim Y, Carver CS, Spiegel D, et al. Role of family caregiv- ers’ self-perceived preparedness for the death of the cancer patient in long-term adjustment to bereavement. Psychooncology 2017; 26(4): 484–492. 25. Hannes K, Lockwood C and Pearson A. A comparative anal- ysis of three online appraisal instruments’ ability to assess validity in qualitative research. Qual Health Res 2010; 20(12): 1736–1743. 8. Barry LC, Kasl SV and Prigerson HG. Psychiatric disorders among bereaved persons: the role of perceived circum- stances of death and preparedness for death. Am J Geriatr Psychiatry 2002; 10(4): 447–457. 26. Richards CA, Starks H, O’Connor MR, et  al. Physicians perceptions of shared decision-making in neonatal and pediatric critical care. Am J Hosp Palliat Care 2018; 35(4): 669–676. 9. Royak-Schaler R, Gadalla S, Lemkau J, et al. Family perspec- tives on communication with healthcare providers during end-of-life cancer care. Oncol Nurs Forum 2006; 33(4): 753–760. 27. Thomas J and Harden A. Methods for the thematic synthe- sis of qualitative research in systematic reviews. BMC Med Res Methodol 2008; 8: 45. 10. Hinkle LJ, Bosslet GT and Torke AM. Factors associated with family satisfaction with end-of-life care in the ICU: a sys- tematic review. Chest 2015; 147: 82–93. 28. Suri H. Epistemological pluralism in research synthesis methods. Int J Qual Stud Educ 2013; 26: 889–911. 11. Almack K, Cox K, Moghaddam N, et al. After you: conver- sations between patients and healthcare professionals in planning for end of life care. BMC Palliat Care 2012; 11: 15. 29. Moher D, Liberati A, Tetzlaff J, et  al. Preferred report- ing items for systematic reviews and meta-analyses: the PRISMA statement. J Clin Epidemiol 2009; 62: 1006–1012. 12. Raijmakers NJH, van Zuylen L, Costantini M, et al. Issues and needs in end-of-life decision making: an international modified Delphi study. Palliat Med 2012; 26(7): 947–953. 30. Aldridge M and Barton E. Establishing terminal status in end-of-life discussions. Qual Health Res 2007; 17(7): 908– 918. 13. Parliamentary and Health Service Ombudsman. Dying without dignity. London: Parliamentary and Health Service Ombudsman, 2015. 31. Barton E, Aldridge M, Trimble T, et al. Structure and varia- tion in end-of-life discussions in the surgical intensive care unit. Commun Med 2005; 2(1): 3–20. 14. ORCID iDs Rebecca J Anderson https://orcid.org/0000-0002-7095 -8914 Megan Armstrong https://orcid.org/0000-0001-6773-9393 Rebecca J Anderson https://orcid.org/0000-0002-7095 -8914 Megan Armstrong https://orcid.org/0000-0001-6773-9393 Palliative Medicine 33(8) 940 References National Institute for Health and Care Excellence. Care of dying adults in the last days of life, 2015. https://www.nice. org.uk/guidance/NG31 32. Barton E. Situating end-of-life decision making in a hybrid ethical frame. Commun Med 2007; 4(2): 131–140. 15. Bernacki RE and Block SD. Communication about serious illness care goals. JAMA Intern Med 2014; 174: 1994–2003. 33. Curtis JR, Engelberg RA, Wenrich MD, et al. Studying com- munication about end-of-life care during the ICU family conference: development of a framework. J Crit Care 2002; 17(3): 147–160. 16. Parker SM, Clayton JM, Hancock K, et al. A systematic review of prognostic/end-of-life communication with adults in the advanced stages of a life-limiting illness: patient/caregiver preferences for the content, style, and timing of informa- tion. J Pain Symptom Manage 2007; 34(1): 81–93. 34. Curtis JR, Engelberg RA, Wenrich MD, et al. Missed oppor- tunities during family conferences about end-of-life care in the intensive care unit. Am J Respir Crit Care Med 2005; 171(8): 844–849. 17. Coombs MA, Parker R, Ranse K, et al. An integrative review of how families are prepared for, and supported during Anderson et al. 941 53. Kehl KA. How hospice staff members prepare family car- egivers for the patient’s final days of life: an exploratory study. Palliat Med 2015; 29(2): 128–137. 35. De Vos MA, Bos AP, Plotz FB, et al. Talking with parents about end-of-life decisions for their children. Pediatrics 2015; 135(2): e465–e476. 54. Liaschenko J, O’Conner-Von S and Peden-McAlpine C. The ‘big picture’: communicating with families about end-of- life care in intensive care unit. Dimens Crit Care Nurs 2009; 28: 224–231. 36. Ekberg S, Danby S, Herbert A, et al. Affording opportunities to discuss deterioration in paediatric palliative care consul- tations: a conversation analytic study. BMJ Support Palliat Care. Epub ahead of print 7 March 2017. DOI: 10.1136/ bmjspcare-2016-001130. 55. Peden-McAlpine C, Liaschenko J, Traudt T, et  al. Constructing the story: how nurses work with families regarding withdrawal of aggressive treatment in ICU – a narrative study. Int J Nurs Stud 2015; 52(7): 1146–1156. 37. Engelberg RA, Wenrich MD and Curtis JR. Responding to fam- ilies’ questions about the meaning of physical movements in critically ill patients. J Crit Care 2008; 23(4): 565–571. 56. Rejno A, Silfverberg G and Ternestedt BM. Reasoning about truth-telling in end-of-life care of patients with acute stroke. Nurs Ethics 2017; 24(1): 100–110. 38. Hsieh HF, Shannon SE and Curtis JR. References Contradictions and com- munication strategies during end-of-life decision making in the intensive care unit. J Crit Care 2006; 21(4): 294–304. 57. Tan A and Manca D. Finding common ground to achieve a ‘good death’: family physicians working with substitute decision-makers of dying patients. A qualitative grounded theory study. BMC Fam Pract 2013; 14: 1–11. 39. Kawashima M. Four ways of delivering very bad news in a Japanese emergency room. Res Lang Soc Interac 2017; 50: 307–325. 40. Miller DK, Coe RM and Hyers TM. Achieving consensus on withdrawing or withholding care for critically ill patients. J Gen Intern Med 1992; 7: 475–480. 58. Caswell G, Pollock K, Harwood R, et al. Communication between family carers and health professionals about end-of-life care for older people in the acute hospital setting: a qualitative study. BMC Palliat Care 2015; 14: 35–14. 41. Pecanac KE. Communicating delicately: introducing the need to make a decision about the use of life-sustaining treatment. Health Commun 2017; 32(10): 1261–1271. 59. Meeker MA, Waldrop DP and Seo JY. Examining family meetings at end of life: the model of practice in a hos- pice inpatient unit. Palliat Support Care 2015; 13(5): 1283–1291. 42. Shaw C, Stokoe E, Gallagher K, et al. Parental involvement in neonatal critical care decision-making. Sociol Health Illn 2016; 38(8): 1217–1242. 43. West HF, Engelberg RA, Wenrich MD, et  al. Expressions of nonabandonment during the intensive care unit family conference. J Palliat Med 2005; 8(4): 797–807. 60. Cassell J. Life and death in intensive care. Philadelphia, PA: Temple University Press, 2005. 61. Meert KL, Eggly S, Pollack M, et al. Parents’ perspectives regarding a physician-parent conference after their child’s death in the pediatric intensive care unit. J Pediatr 2007; 151(1): 50–55.e2. 44. Abib El, Halal GM, Piva JP, Lago PM, et al. Parents’ perspec- tives on the deaths of their children in two Brazilian pae- diatric intensive care units. Int J Palliat Nurs 2013; 19(10): 495–502. 62. Maynard DW. On clinicians co-implicating recipients’ per- spective in the delivery of diagnostic news. In: Drew P and Heritage J (eds) Talk at work: interaction in institutional settings. Cambridge: Cambridge University Press, 1992, pp. 331–358. 45. Gordon C, Barton E, Meert KL, et al. Accounting for medi- cal communication: parents’ perceptions of communica- tive roles and responsibilities in the pediatric intensive care unit. Commun Med 2009; 6(2): 177–188 46. Lind R. References Sense of responsibility in ICU end-of-life decision- making: relatives’ experiences. Nurs Ethics 2019; 26: 270–279. 63. Wendler D and Rid A. Systematic review: the effect on surrogates of making treatment decisions for others. Ann Intern Med 2011: 336–346. 47. Meert KL, Eggly S, Pollack M, et al. Parents’ perspectives on physician-parent communication near the time of a child’s death in the pediatric intensive care unit. Pediatr Crit Care Med 2008; 9(1): 2–7. 64. Dyer C. Law, ethics, and emotion: the Charlie Gard case. BMJ 2017; 358: j3152. 65. Dyer C. Doctors can stop ventilating 11 month old boy brain damaged at birth. BMJ 2018; 360: k482. 48. Odgers J. No one said he was dying: families’ experiences of end-of-life care in an acute setting. Aust J Adv Nurs 2018; 35: 21–31. 66. Brighton LJ, Selman LE, Bristowe K, et al. Emotional labour in palliative and end-of-life care communication: a qualita- tive study with generalist palliative care providers. Patient Educ Couns 2019; 102: 494–502. 49. Bach V, Ploeg J and Black M. Nursing roles in end-of-life decision making in critical care settings. West J Nurs Res 2009; 31(4): 496–512. 67. Addington-Hall JM and O’Callaghan AC. A compari- son of the quality of care provided to cancer patients in the UK in the last three months of life in in-patient hospices compared with hospitals, from the perspec- tive of bereaved relatives: results from a survey using the VOICES questionnaire. Palliat Med 2009; 23(3): 190– 197. 50. Bartel DA, Engler AJ, Natale JE, et al. Working with families of suddenly and critically ill children: physician experiences. Arch Pediatr Adolesc Med 2000; 154(11): 1127–1133. 51. Bloomer MJ, Endacott R, Ranse K, et al. Navigating commu- nication with families during withdrawal of life-sustaining treatment in intensive care: a qualitative descriptive study in Australia and New Zealand. J Clin Nurs 2017; 26(5–6): 690–697. 68. Brandes K, Linn AJ, Butow PN, et al. The characteristics and effectiveness of question prompt list interventions in oncol- ogy: a systematic review of the literature. Psychooncology 2015; 24(3): 245–252. 52. Epstein EG. End-of-life experiences of nurses and physi- cians in the newborn intensive care unit. J Perinatol 2008; 28(11): 771–778.
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Modeling the Influences on Sustainable Attitudes of Students Towards Environmental Challenges: A Partial Least Squares- Structural Equation Modelling Approach
Opportunities and challenges in sustainability
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Opportunities and Challenges in Sustainability https://www.acadlore.com/journals/OCS Opportunities and Challenges in Sustainability https://www.acadlore.com/journals/OCS https://www.acadlore.com/journals/OCS Abstract: To assess sustainable attitudes towards environmental issues, understanding the most impactful variables amongst sub-dimensions of attitudes proves critical. In this research, the subdimensions of attitudes of students towards environmental challenges were modelled. An online Likert-scale questionnaire, spanning from 1 variables amongst sub-dimensions of attitudes proves critical. In this research, the subdimensions of attitudes of students towards environmental challenges were modelled. An online Likert-scale questionnaire, spanning from 1 'Strongly Disagree' to 5 'Strongly Agree', was administered to 380 high school and associate degree students in Afyonkarahisar city center between 15 September and 15 November 2022. The questionnaire aimed to gauge the students' attitudes using the Affective, Cognitive, and Behavioural sub-dimensions. Results revealed a statistically significant effect coefficient of 0.557 between the cognitive and affective attitudes. In a similar vein, the cognitive attitude's impact on behavioural attitude was found to be statistically significant with an effect coefficient of 0.534. However, a coefficient of 0.017 between affective and behavioural attitudes demonstrated no statistically significant mediator effect. Contrary to the initial hypotheses surrounding the mediator effect of affective attitude on behavioural attitude, the findings indicate that cognitive and affective attitudes independently influence behavioural attitude. Within the cognitive dimension, the awareness of the escalating environmental problems emerged as a paramount item. It is implied that for fostering sustainable environmental behaviour, the cognitive dimension plays a pivotal role. Keywords: Sustainable attitude; Environmental challenges; Environmental sensitivity; Environmental behaviour; Partial Least Squares-Structural Equation Modelling (PLS-SEM); Statistical modelling Sinan Saraçlı1* , Berkalp Tunca2 , İsa Gül3 , Erkan Arı4 , Bilge Villi5 , Buket İpek Berk6 , İhsan Berk6 , Gratiela Dana Boca7 1 Department of Biostatistics, Balikesir University, 10145 Balikesir, Turkey 2 Department of Statistics, Eskisehir Osmangazi University, 26040 Eskisehir, Turkey 3 Department of Health Management, Afyonkarahisar Health Sciences University, 03030 Afyonkarahisar, Turkey 4 Department of Econometrics, Dumlupinar University, 43100 Kutahya, Turkey 5 p p y y y Department of Management and Organization, Balikesir University, 10145 Balikesir, Turkey Department of Biostatistics Sanko University 27090 Gaziantep Turkey 5 Department of Management and Organization, Balikesir University, 10145 Balikesir, Turkey 6 6 Department of Biostatistics, Sanko University, 27090 Gaziantep, Turkey 7 D f E i T h i l U i i f Cl j N 430122 B 7 Department of Economics, Technical University of Cluj Napoca, 430122 Baia Mare, Roman * Correspondence: Sinan Saraçlı (ssaracli@balikesir.edu.tr) Modeling the Influences on Sustainable Attitudes of Students Towards Environmental Challenges: A Partial Least Squares- Structural Equation Modelling Approach Sinan Saraçlı1* , Berkalp Tunca2 , İsa Gül3 , Erkan Arı4 , Bilge Villi5 , Buket İpek Berk6 , İhsan Berk6 , Gratiela Dana Boca7 Received: 07-21-2023 Citation: Saraçlı, S., Tunca, B., Gül, I., Arı, E., Villi, B., Berk, B. I., Berk, I., & Boca, G. D. (2023). Modeling the influences on sustainable attitudes of students towards environmental challenges: A partial least squares- structural equation modelling approach. Oppor Chall. Sustain., 2(3), 161-171. https://doi.org/10.56578/ocs020305. © 2023 by the author(s). Published by Acadlore Publishing Services Limited, Hong Kong. This article is available for fr download and can be reused and cited, provided that the original published version is credited, under the CC BY 4.0 licen 1. Introduction Over recent years, heightened awareness has been generated concerning the severe threats environmental challenges pose to urban regions. Among these looming threats are issues jeopardising the longevity of pivotal environmental resources such as nature reserves, open spaces, floodplains, water assets, and natural parks. From these environmental predicaments, outcomes such as intensified heat waves, droughts, augmented flooding, and heavier precipitation have been reported, potentially exacerbated by rapid urbanisation and shifting climatic conditions. Concurrently, threats to urban zones and their infrastructural integrity have been identified. Notably, escalating pressures on public domains, rising structural degradation risks under the guise of natural area developments, compromised water buffer systems, and amplifying demands for emergency response and https://doi.org/10.56578/ocs020305 161 associated services have been highlighted (Cobbinah et al., 2017; Korah & Cobbinah, 2016; Mpofu, 2013; Quagraine, 2011; WHO, 2013). g Sustainable development, a cornerstone in addressing environmental dilemmas, has been established as one of the EU's core strategies (News Waste Recycling European Environment Agency, 2023). It has been documented that nearly a third of Europe's plastic waste undergoes recycling. Additionally, a sharp rise in global plastic production has been recorded, surging from 1.5 million tons in 1950 to a staggering 359 million tons in 2018 (Actualitate Parlamentul European, 2023; Boca & Saraçli, 2023). Efforts to curtail environmental degradation have been primarily achieved by emphasising environmental advantages throughout consumption processes. The act of procuring recyclable or ecologically benign products from environmentally considerate companies is often perceived as an emblem of positive environmental behaviour (Saraçlı et al., 2014). The term "sustainable development", although conceptually beneficial, presents global challenges. Recent dominant economic growth paradigms globally have been discerned as catalysing tensions concerning environmental preservation. A heightened conflict between sustainable development goals (SDGs) and economic growth has been observed, primarily driven by excessive energy and material consumption leading to augmented emissions. An emergent objective in this discourse has been to enrich educational curricula with sustainable development principles, fostering avenues for individuals to champion sustainability (Saraçlı, S. & Boca, 2021). p p p g p y ( ç ) A comprehensive understanding of environmental behaviour mandates consideration of both the costs and benefits of environmental actions, alongside prevailing attitudes towards the environment (Deacon & Shapiro, 1975; Kahn & Matsusaka, 1997; Kahn, 2002; Sciarini et al., 2007). Investigations into the nexus between environmental attitudes and consequent actions have been voluminous, predominantly underpinned by focused case studies. 1. Introduction It has been posited by studies such as those of Kahn (2002) and Baldassare & Katz (1992) that environmental matters deeply influence consumer decisions, as seen in choices like opting for hybrid vehicles, utilising public transport, or curtailing gasoline consumption. Furthermore, these issues also shape specific environmental practices like recycling and water conservation. p y g In a geographically specific study, Vaske & Donnelly (1999) revealed, through mapping voting predilections regarding wildlife conservation in Colorado, USA, that value orientations were profoundly influenced by prevailing attitudes, which in turn steered behavioural intentions. Interestingly, findings from Butler & Francis (1997) indicated that environmental attitudes even permeate areas as distinct as women's clothing purchase decisions. This connection between environmental attitudes and a myriad of environmental behaviours has been substantiated across various nations and demographic subsets (Blake, 2001; Casaló & Escario, 2018; Cottrell, 2003; Holbert et al., 2003; Levine & Strube, 2012; Scott & Willits, 1994). Political voting has been interpreted by some as a manifestation of environmental action. In this vein, electorates have been observed to favour political factions proposing environmental resolutions in locales as diverse as California, Colorado, New Jersey, Belgium, New Zealand, Australia, Germany, and others (Boonen et al., 2014; Edwards & Lomax, 2012; Gauja & Jackson, 2016; Gill et al., 1986; Papp, 2022; Rüdig, 2012; Rudman et al., 2013). Although a direct correlation between environmental knowledge and environmental education has not been consistently affirmed, it has been observed that alterations in environmental decision-making processes can occur (Hungerford & Volk, 1990). In this discourse, it has been proposed that environmental behaviours might be shaped by an amalgamation of behaviour, attitude, and knowledge. Further, evidence suggests that refining these behaviours necessitates modifications in educational paradigms (Heimlich & Ardoin, 2008; Hines et al., 1987). Yet, gauging the interplay between behaviour, attitude, and knowledge has been acknowledged as challenging (Cincera, 2019). As a result, certain inquiries have exclusively probed the interrelation between environmental attitudes and behaviours (Hungerford & Volk, 1990). Another dimension to this discourse is the influence of "culture" on environmental outlooks. Pioneers in the cultural domain such as Bogner (2002), Buttefield (1965), Giddens (2012), and Stern (2000) have underscored that, within a societal milieu, the impact of cultural nuances on environmental behaviours and attitudes cannot be sidelined (Saraçlı & Boca, 2021). 2. Methodology In assessing the attitudes of students, demarcated by the Affective, Cognitive, and Behavioural subdimensions, a Likert-scale online questionnaire was employed. The scale ranged from 1, representing 'Totally Disagree', to 5, signifying 'Totally Agree'. This questionnaire was administered to a cohort of 380 high school and associate degree students, selected through a random sampling technique, in the city centre of Afyonkarahisar from 15 September to 15 November 2022. For the formulation of the questionnaire, the attitude scale towards environmental problems delineated by Kılıç & Kan (2020) was utilised. A noteworthy proportion of these questionnaires was returned incomplete; thus, subsequent analyses were conducted based on the 298 adequately completed ones. The study, in alignment with the Declaration of Helsinki, was sanctioned by the Ethics Committee of Afyon Kocatepe University (Date: 21/06/2022, No: 2022/18). Informed consent was procured from all participating subjects. The data accrued for this study were subjected to various analytical techniques, including descriptive statistics, factor analysis, validity and reliability analysis, and PLS-SEM. Analyses were executed utilising the SPSS and SmartPLS software tools. Though the selection of an optimal statistical technique for particular data sets poses challenges for many researchers, it is imperative to align with the research problem and hypotheses at hand. Given the objectives of this study and its associated hypotheses, SEM was discerned as the singularly apt statistical technique for modelling inter-dimensional relationships and pinpointing influential elements within each dimension, accompanied by their coefficients. SPSS, a widely recognised statistical software, rendered detailed results for both descriptive statistics and Explanatory Factor Analysis, while SmartPLS provided the requisite modelling and coefficient findings, thus elucidating the statistical interpretations. SEM stands as a rigorous statistical methodology, integral for validating hypotheses regarding causal links between both observed and unobserved (latent) variables. This approach has proven invaluable for addressing complexities inherent to theoretical construction (Reisinger & Turner, 1999; Saraçlı & Ulucan, 2021). Within the realms of economics and social sciences, SEM is ubiquitously employed, principally owing to its capability to model latent variables, accommodate diverse forms of measurement errors, and empirically test holistic theories. Two primary methods delineate the SEM spectrum: covariance-based SEM and variance-based SEM. Covariance-based SEM, which employs an empirical variance-covariance matrix for model parameter estimation, is traditionally selected when the model is presumed to encompass one or more common factors. Conversely, variance-based SEM initially formulates proxies as linear combinations of observed variables, subsequently leveraging these proxies for model parameter estimation. 1. Introduction The imperative of accentuating the roles of environmental educators and the encompassing realm of environmental education emerges from the need to mitigate, and ideally nullify, the adverse anthropogenic impacts on the environment. A foundational goal of environmental education is the inculcation of apt behaviours and actions, orchestrated towards the resolution of environmental quandaries and the amplification of environmental cognizance (Milton et al., 1995). Disconcertingly, it has been elucidated that prevailing traditional methodologies do not adequately bolster the environmental consciousness of individuals nor effectively address the mitigation of environmental issues (Artun & Okur, 2015; Çimen & Yılmaz, 2014; D'Amato & Krasny, 2011; Feinstein, 2004; Uyanık, 2016; Wynveen et al., 2011). y y In response to these findings, contemporary approaches to environmental education have been fervently explored. Novel learning paradigms are continuously being conceptualised and incorporated, with a focus on augmenting environmental knowledge and positively refining attitudes and behaviours directed towards the environment. Generally, the overarching intent of environmental education is not merely to endow students with knowledge and skills, but also to imbue them with awareness and to capacitate them in actively partaking in 162 environmental preservation endeavours. It has been postulated by Atasoy (2006) that the pursuit of environmental education is the positive transformation of individual attitudes and behaviours. Within the spectrum of adult education, the gravitas of creating or attributing meaning is paramount. It is through self-reflection and critical analysis that actions are cultivated within the societal matrix, thereby deriving significance from experiential episodes (Mezirow, 1994). Attempts have been made to discern the impact of environmental knowledge upon environmental behaviours. An emergent consensus among researchers indicates that unsustainable behaviours often stem from a dearth of environmental knowledge coupled with a disregard for the ramifications of one's actions (Sakçı & Uyanık, 2023; Williamson & Lynch‐Wood, 2001). In light of the extant environmental challenges and the environment's responses, especially within the ambit of the research question-"Affective and Cognitive Attitudes effects Behavioral Attitude"-this study is poised to architect a model detailing the multifaceted attitudes of high school and associate degree students vis-à-vis environmental issues, offering a nuanced perspective. 2. Methodology Such a method is apt when the model is surmised to integrate composite constructs (Gul et al., 2023; Henseler et al., 2016). Among the myriad techniques within variance-based SEM, the PLS path model is heralded as the most intricate and adaptive (Hair et al., 2011a; McDonald, 1996). The adoption of PLS analysis has proliferated across disciplines, evidenced in areas such as information systems research, strategic management, and marketing (Hair et al., 2012; Hair et al., 2011b; Marcoulides & Saunders, 2006). Due to its adeptness at modelling constructs, especially in behavioural research, PLS effectively delineates relationships amidst latent variables and potent concepts (Höök & Löwgren, 2012). Such proficiency has positioned PLS analysis as a preeminent tool for modelling intricate factor relationships and assessing their significance (Albers, 2009; Henseler et al., 2016). p g g In the present study, inspiration was drawn from Gul et al. (2023) in formulating the model depicted in Figure 1. The ensuing hypotheses pertain to the model portrayed in Figure 1: H1: Cognitive Attitude influences Behavioural Attitude. H2: Cognitive Attitude impacts Affective Attitude. H3: Affective Attitude influences Behavioural Attitude. H3: Affective Attitude influences Behavioural Attitude. H4: A mediating effect is observed in Affective Attitude on the influence of Cognitive Attitude on Behavioural Attitude. 163 Figure 1. Research model 3. Results 3.1 Descriptive Analysis Demographic characteristics of the participants were collated, with the variables of gender, age, education level, and parental education levels detailed in Table 1. Figure 1. Research model Figure 1. Research model 3.1 Descriptive Analysis graphic characteristics of the participants were collated, with the variables of gender, age, education level, ntal education levels detailed in Table 1. Demographic characteristics of the participants were collated, with the variables of gender, age, education level, and parental education levels detailed in Table 1. Demographic characteristics of the participants were collated, with the variables of gender, age, education level, and parental education levels detailed in Table 1. Table 1. Detailed demographic profile of participants Variable Level f (Frequency) % (Percentage) Gender Female 191 64.1 Male 107 35.9 Education level High School 116 38.9 Associate degree 182 61.1 Father education level No formal education 13 4.4 Primary School 123 41.3 Middle School 41 13.8 High School 68 22.8 Associate degree 49 16.4 Mother education level No formal education 61 20.5 Primary School 164 55.0 Middle School 19 6.4 High School 33 11.1 Associate degree 20 6.7 For gender, females were found to represent 64.1% of the sample while males accounted for 35.9%. In the Table 1. Detailed demographic profile of participants For gender, females were found to represent 64.1% of the sample while males accounted for 35.9%. In the context of educational attainment, 38.9% of the participants had completed high school, and 61.1% had achieved an associate degree. For gender, females were found to represent 64.1% of the sample while males accounted for 35.9%. In the context of educational attainment, 38.9% of the participants had completed high school, and 61.1% had achieved an associate degree. g A scrutiny of the fathers' educational backgrounds revealed that 4.4% had no formal education, 41.3% had completed primary education, 13.8% had concluded middle school, 22.8% were high school graduates, and 16.4% possessed an associate degree. In comparison, for the mothers, 20.5% had no formal education, 55.0% were primary school graduates, 6.4% had finished middle school, 11.1% had concluded high school, and 6.7% had an associate degree. The mean age of the participants was recorded at 38.53 years. g g p p y 2 provides an exhaustive breakdown of the factors under investigation. Table 2 provides an exhaustive breakdown of the factors under investigation. Table 2. Detailed analysis of study factors Variable n Min. Max. Mean Std. Deviation Affective Dimension 298 1 5 1.38 0.57 Behavioral Dimension 298 1 5 1.95 0.61 Cognitive Dimension 298 1 5 1.39 0.48 Table 2. 3.1 Descriptive Analysis Detailed analysis of study factors 164 The findings related to the affective, behavioural, and cognitive dimensions were summarised from an analysis of 298 participants. For the Affective Dimension, scores ranged from a minimum of 1 to a maximum of 5, with an average score of 1.38 and a standard deviation of 0.57. The Behavioral Dimension scores also ranged from 1 to 5, presenting an average of 1.95 and a standard deviation of 0.61. Lastly, the Cognitive Dimension displayed scores between 1 and 5, with a mean value of 1.39 and a standard deviation of 0.48. 3.2 Validity and Reliability of the Model To establish convergent validity within the PLS model, three criteria were outlined. Firstly, it is imperative for the standard factor loading of latent variables to exceed 0.5 and to be statistically significant. Secondly, both Composite Reliability (CR) and Cronbach's Alpha (CA) values for each construct should surpass 0.7. Lastly, the Average Variance Explained (AVE) must be greater than 0.5 (Fornell & Larcker, 1981; Hair et al., 1998). Details on the factor loadings, CA, CR, and AVE for the affective, behavioural, and cognitive dimensions are provided in Table 3. Table 3. Metrics for convergent validity: Factor loadings, CA, CR and AVE values Item/Dimension Factor Loadings CΑ CR AVE Affective Dimension A1. Disposing waste materials into the environment does not upset me. 0.817 0.832 0.878 0.547 A2. Increasing environmental problems does not disturb me. 0.766 A3. The thought that toxic substances thrown into the environment affect all living things does not scare me. 0.827 A4. Not being able to prevent environmental problems does not upset me. 0.556 A5. Thinking that we cannot leave a clean environment to future generations does not worry me. 0.718 A6. Environmental problems do not affect my health. 0.501 Behavioral Dimension B1. I talk to my friends about what can be done to reduce environmental damage. 0.702 0.793 0.857 0.546 B2. Burnt gases from car exhausts pollute the atmosphere and make me angry. 0.626 B3. I ask questions around me to find out what causes air pollution. 0.813 B4. I do research on how to solve environmental problems. 0.736 B5. I would like to work voluntarily in activities for the protection of the environment. 0.654 Cognitive Dimension C1. I am aware that environmental problems harm all living things. 0.676 0.859 0.891 0.505 C2. I believe that we should live in harmony with our environment. 0.696 C3. I am worried about the thought that people will suffer the consequences of increasing environmental problems caused by humans. 0.583 C4. I am aware that environmental problems are getting bigger. 0.710 C5. I am aware that environmental problems reduce the quality of life. 0.732 C6. In order to solve environmental problems, I first keep my own environment clean. 0.600 C7. I feel sad when environmental problems harm living creatures and nature. 0.567 C8. Increasing deaths of living things due to environmental problems worries me. 0.667 Table 3. 3.2 Validity and Reliability of the Model Metrics for convergent validity: Factor loadings, CA, CR and AVE values Upon inspection of Table 3, CR values ranged from 0.793 to 0.859. The AVE values were found to be bracketed between 0.505 and 0.547, signifying adherence to the stipulated criteria. The discriminant validity of the measurement model was gauged using the Fornell-Larcker criterion. This validity assessment requires the square root of the AVE for each construct to be juxtaposed against inter-construct correlations. A model demonstrates satisfactory discriminant validity when the square root values of AVE surpass their respective correlations (Fornell & Larcker, 1981). The related values are encapsulated in Table 4. Table 4. Discriminant validity assessment using the Fornell-Larcker criterion Table 4. Discriminant validity assessment using the Fornell-Larcker criterion Affective Dimension Behavioral Dimension Cognitive Dimension Affective Dimension 0.740 Behavioral Dimension 0.315 0.739 Cognitive Dimension 0.557 0.544 0.710 165 In the Fornell-Larcker criterion table, diagonal values indicate the square root of the AVE for each construct, while off-diagonal values depict correlation coefficients between constructs. The model's discriminant validity is deemed established, as the square root of the AVE consistently exceeds the correlation coefficients between constructs. An alternative approach, the HTMT criterion, which represents the geometric mean of factor correlations, was also employed. This criterion has been identified as potent for values not exceeding 0.90 (Hair et al., 2017). The associated findings are articulated in Table 5. Table 5. Discriminant validity evaluation using the HTMT criterion Table 5. Discriminant validity evaluation using the HTMT criterion Affective Dimension Behavioral Dimension Cognitive Dimension Affective Dimension Behavioral Dimension 0.380 Cognitive Dimension 0.650 0.645 Given that the HTMT values in Table 5 oscillate between 0.380 and 0.650, remaining under the critical threshold of 0.9, the model's discriminant validity is affirmed in line with the HTMT criterion. Table 5. Discriminant validity evaluation using the HTMT criterion Affective Dimension Behavioral Dimension Cognitive Dimension Affective Dimension Behavioral Dimension 0.380 Cognitive Dimension 0.650 0.645 Given that the HTMT values in Table 5 oscillate between 0.380 and 0.650, remaining under the critical threshold of 0.9, the model's discriminant validity is affirmed in line with the HTMT criterion. Given that the HTMT values in Table 5 oscillate between 0.380 and 0.650, remaining under the critical threshold of 0.9, the model's discriminant validity is affirmed in line with the HTMT criterion. 3.3 Structural Model Findings rived from the PLS path diagram analysis for the model are depicted in Figure 2. Results derived from the PLS path diagram analysis for the model are depicted in Figure 2. Results derived from the PLS path diagram analysis for the model are depicted in Figure 2. Figure 2. PLS path diagram of the model Figure 2. PLS path diagram of the model Upon assessment of the path coefficients in Figure 2, it was observed that the cognitive component influences the affective component with a positive coefficient of 0.557. Similarly, the cognitive component's impact on the behavioural component is noted with a positive coefficient of 0.534, while the affective component's influence on the behavioural component is indicated by a positive coefficient of 0.017. Parameter estimates, along with the t statistics of the PLS model, are detailed in Table 6. Table 6. Parameter estimates and T statistics of the PLS model Hypothesis Relationship Parameters (β) t-Statistics p-Values Decision H1 Affective → Behavioral 0.017 0.266 0.790 Not Supported H2 Cognitive → Affective 0.557 5.930 0.0001* Supported H3 Cognitive → Behavioral 0.534 7.820 0.0001* Supported *p<0.01 Table 6. Parameter estimates and T statistics of the PLS model Within Table 6, t statistics and p values significant to the model coefficients of Figure 2 are delineated. According to the data, hypothesis H1 is not supported statistically (p=0.793), whereas hypotheses H2 and H3 obtain Within Table 6, t statistics and p values significant to the model coefficients of Figure 2 are delineated. According to the data, hypothesis H1 is not supported statistically (p=0.793), whereas hypotheses H2 and H3 obtain 166 statistical validation (p=0.0001). In alignment with these results, coefficients between Cognitive → Affective (0.557) and Cognitive → Behavioural (0.534) were deemed statistically significant. Table 7. Tabulation of effect sizes (f 2) Table 7. Tabulation of effect sizes (f 2) Relationship f 2 Values Effect Size Affective → Behavioral 0.000 Rejected Cognitive → Affective 0.449 Accepted Cognitive → Behavioral 0.280 Accepted Using the benchmarks set by Hair et al. (1998), effect sizes were classified as >=0.02 (low), >= 0.15 (medium), and >= 0.35 (strong). An examination of the data from Table 7 revealed the Affective → Behavioural link had an effect size of 0.000, thus signifying no discernible effects. Conversely, the Cognitive → Affective link exhibited a strong effect size of 0.449. 3.3 Structural Model Findings Additionally, the Cognitive → Behavioural relationship showed a medium effect size of 0.280, indicating a significant association between cognitive factors and behavioural outcomes. Assessment of the VIF values revealed measurements of 1.449 between affective and behavioural components, 1.000 between cognitive and affective components, and 1.449 between cognitive and behavioural components. Utilizing the threshold provided by Henseler et al. (2014), wherein a VIF value equal to or exceeding 5 suggests multicollinearity issues, it was deduced that multicollinearity was not a concern in this model. y y Table 8 shows the findings regarding the indirect effects of the model given in Figure 2. Table 8. Indirect effect values within the PLS model Relationship Parameters t- Statistics p-Value Cognitive→Affective→Behavioral 0.010 0.225 0.799 Table 8. Indirect effect values within the PLS model The indirect effects were quantified, identifying the "Cognitive -> Affective -> Behavioural" relationship with a value of 0.010. This value insinuates that cognitive variables mildly influence affective variables, which subsequently exert a moderate impact on behavioural outcomes. However, the lack of statistical significance in this indirect effect (p=0.799>0.05) suggests that cognitive variables might not considerably dictate behavioural outcomes and that affective variables might not serve as a mediator in this intricate causal network. The arrangement and timing of survey items could introduce bias into participant responses, potentially skewing their attitudes, behaviours, and opinions. This phenomenon, termed common method bias, arises when the chosen measurement methodology disproportionately sways research outcomes. Amongst the array of tools available to ascertain common method bias, this study employed Harman's single factor test. Given the finding that a single factor accounted for less than 50% of the explained variance, the research was concluded to be free from common method bias (Podsakoff et al., 2003). 4. Discussion and Conclusion Integral to the 2030 Agenda for Sustainable Development are the SDGs, comprising 17 distinct targets and 169 specified objectives. These objectives are categorised into five main pillars, colloquially termed the "5Ps". These pillars encompass: (i) People, which encapsulates objectives such as poverty reduction, hunger eradication, provision of quality education, and attainment of gender parity; (ii) Planet, centred on mitigating planetary pollution and endorsing sustainable utilisation of natural resources; (iii) Prosperity, focusing on enhancing individual well-being and nurturing quality life; (iv) Peace, dedicated to fostering equality, fortifying legal institutions, and staving off conflict; and (v) Partnerships, which advocate for collaborative efforts spanning individuals to organisations to achieve the SDGs (Cassar, 2022). The present study zeroes in on the Planet category, underscoring the imperative of fostering sustainable environmental attitudes to safeguard the Earth from degradation. Previous research indicates that environmental knowledge, in isolation, inadequately predicts environmental behaviour (Hungerford & Volk, 1990). Similar conclusions have been reached in other studies, asserting that mere environmental knowledge does not profoundly influence the cultivation of environmental awareness or environmentally-sensitive behaviours (Artun & Okur, 2015; Çimen & Yılmaz, 2014; Ramsey & Rickson, 1976). This shortfall in sustainable conduct can be attributed to a prevalent lack of environmental awareness, coupled with a disregard for the ramifications of one's actions on the environment (Williamson & Lynch‐Wood, 2001). Research conducted on the influence of environmental knowledge on behaviour has spawned diverse outcomes. While certain studies postulate that environmental knowledge is insufficient in moulding behavioural patterns (Hungerford & Volk, 1990; Ramsey & Rickson, 1976), others propound that multiple determinants, apart from knowledge, shape environmentally-conscious actions (Ajzen, 1991; Hungerford & Volk, 1990; Sakçı & Uyanık, 2023). Noteworthy in this study is the finding that cognitive and affective attitudes independently and distinctly 167 influence behavioural attitudes. Such a discovery accentuates the notion that, for sustainable environmental behaviours to flourish, an acute cognitive awareness of escalating environmental challenges is paramount. Further analyses reveal that the item A3, centred on the dangers of environmental toxins, exerts the most pronounced effect on affective attitudes (coefficient: 0.837). In contrast, the item A4, which pertains to the distress caused by unchecked environmental issues, wields the least influence (coefficient: 0.658). Additionally, items C4 and C7, concerning growing environmental problems and their impact on living organisms respectively, influence cognitive attitudes the most and least (coefficients: 0.775 and 0.657). Data Availability The data used to support the research findings are available from the corresponding author upon reque 4. Discussion and Conclusion Regarding behavioural attitudes, item B3, which delves into inquiries about air pollution sources, manifests the highest effect (coefficient: 0.758), while item B2, focusing on vehicular pollution's environmental impact, exhibits the least (coefficient: 0.718). g p p Statistical analyses highlight that cognitive attitudes significantly impact both affective (coefficient: 0.557) and behavioural attitudes (coefficient: 0.534). However, the influence of affective attitude on behavioural attitude, with a coefficient of 0.017, is deemed statistically insignificant, suggesting that cognitive attitude does not mediate between affective and behavioural attitudes. This underlines the independent effects of both cognitive and affective dimensions on behavioural outcomes. Given the study's contextual limitations-constrained to high school and associate degree students in Afyonkarahisar-it can be cautiously inferred, bearing in mind demographic similarities, potential implications for broader regions. It is surmised that enhancing educational levels and cultivating a deeper appreciation for environmental preservation for succeeding generations could potentiate sustainable environmental behaviour. Concurrently, it is posited that transitioning away from fossil fuels and reinforcing measures against forest fires are pivotal. With escalating climatic changes and global warming, it becomes increasingly urgent for both individuals and governments to fortify preventive measures. This study underscores the imperative of understanding the root causes of environmental pollution to facilitate these preventative actions. Author Contributions Conceptualization, SS.; methodology, S.S., B.T., G.D.B.; software, B.T., İ.G.; validation, SS., BT. and G.D.B; formal analysis, S.S and B.T.; investigation, B.İ.B., İ.B., E.A. and B.V.; resources, GDB and İG.; data curation, S.S.; writing-original draft preparation, SS., and BT. All authors have read and agreed to the published version of the manuscript. Conceptualization, SS.; methodology, S.S., B.T., G.D.B.; software, B.T., İ.G.; validation, SS., BT. and G.D.B; formal analysis, S.S and B.T.; investigation, B.İ.B., İ.B., E.A. and B.V.; resources, GDB and İG.; data curation, S.S.; writing-original draft preparation, SS., and BT. All authors have read and agreed to the published version of the manuscript. The authors declare no conflict of interest. The authors declare no conflict of interest. References Actualitate Parlamentul European. (2023). Plastic waste and recycling in the EU in figures. https://www.europarl.europa.eu/news/ro/headlines/society/20181212STO21610/deseurile-din-plastic-si- reciclarea-in-ue-in-cifre. Ajzen, I. (1991). The theory of planned behavior. Organ. Behav. Hum. Decis., 50, 179–211. https://doi.org/10.1016/0749-5978(91)90020-T. Albers, S. (2009). PLS and success factor studies in marketing. In V. Esposito Vinzi, W. Chin, J. Henseler, & H. (Eds) Wang (Eds.), Handbook of Partial Least Squares, Springer Handbooks of Computational Statistics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-32827-8_19. Albers, S. (2009). PLS and success factor studies in marketing. In V. Esposito Vinzi, W. Chin, J. Henseler, & H. (Eds) Wang (Eds.), Handbook of Partial Least Squares, Springer Handbooks of Computational Statistics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-32827-8_19. Artun, H. & Okur, M. (2015). Ortaokul öğrencilerinin çevre kavramına yönelik bilgi ve çevreyi anlama düzeylerinin belirlenmesi. Dicle Univ. Ziya Gokalp Educ. Fac. J., 24, 277–293. https://doi.org/10.14582/DUZGEF.499. Artun, H. & Okur, M. (2015). Ortaokul öğrencilerinin çevre kavramına yönelik bilgi ve çevreyi anlama düzeylerinin belirlenmesi. Dicle Univ. Ziya Gokalp Educ. Fac. J., 24, 277–293. https://doi.org/10.14582/DUZGEF.499. Atasoy, E. (2006). Çevre İçin Eğitim-Çocuk Doğa Etkileşimi. Bursa: Ezgi Kitap Evi. https://www.kitapyurdu.com/kitap/cevre-icin-egitim-cocuk-doga-etkilesimi/77969.html. p py p g g Baldassare, M. & Katz, C. (1992). The personal threat of environmental problems as predictor of environmental practices. Environ. Behav., 24(5), 602–616. https://doi.org/10.1177/0013916592245002. Blake, D. E. (2001). Contextual effects on environmental attitudes and behavior. Environ. Behav., 33(5), 708–725. https://doi.org/10.1177/00139160121973205. p g Boca, G. D. & Saraçli, S. (2023). Effects of Romanian student’s awareness and needs regarding plastic waste management. Sustainab., 15(8), 6811. https://doi.org/10.3390/su15086811. 168 Bogner, F. X. (2002). The influence of a residential outdoor education program to pupils environment perception. J. Psychol. Educ., 17, 19-34. https://doi.org/10.1007/BF03173202. Boonen, J., Meeusen, C., & Quintelier, E. (2014). The link between social attitudes and voting propensities: Attitude-vote consistency among adolescents in Belgium. Elect Stud., 36, 81–93. https://doi.org/10.1016/j.electstud.2014.07.002. Butler, S. M. & Francis, S. (1997). The effects of environmental attitudes on apparel purchasing behavio Text. Res. J., 15(2), 76–85. https://doi.org/10.1177/0887302X9701500202. , ( ), p g Buttefield, P. G. (1965). Educational Attitudes and Learning Orientations of Rural Adults in Selected Cultural Settings. University of Wisconsin, Madison, USA. Casaló, L. V. & Escario, J. J. (2018). Heterogeneity in the association between environmental attitudes and pro- environmental behavior: A multilevel regression approach. J. Cleaner Prod., 175, 155–163. https://doi.org/10.1016/j.jclepro.2017.11.237. Cassar, C. (2022). Addressing transformative education and governance through the sustainable developm 4: A case study. Oppor Chall. Sustain., 1(2), 105–115. https://doi.org/10.56578/ocs010203. Çimen, O. & Yılmaz, M. (2014). References Dönüşümsel öğrenme kuramına dayalı çevre eğitiminin biyoloji öğretmen adaylarının çevre sorunlarına yönelik algılarına etkisi. Bartin Univ. Educ. Fac. J., 3(1), 339–359. Cincera, J. (2019). Pro-environmental behavior in environmental education program. Rwlnetwork. https://www.rwlnetwork.org/media/67161/proenvironmental_behavior_models.pdf. Cobbinah, P. B., Poku-Boansi, M., & Peprah, C. (2017). Urban environmental problems in Ghana. Environ. Dev., 23, 33–46. https://doi.org/10.1016/j.envdev.2017.05.001. Cottrell, S. P. (2003). Influence of sociodemographics and environmental attitudes on general responsible environmental behavior among recreational boaters. Environ. Behav., 35(3), 347–375. https://doi.org/10.1177/0013916503035003003. D’Amato, L. & Krasny, M. (2011). Outdoor adventure education: Applying transformative learning theory to understanding instrumental learning and personal growth in environmental. J. Environ. Educ., 42(4), 237– 254. https://doi.org/10.1080/00958964.2011.581313. p g Deacon, R. & Shapiro, P. (1975). Private preference for collective goods revealed through voting on referenda. Am. Econ. Rev., 65(5), 943–955. Edwards, B. & Lomax, N. (2012). ‘For a richer New Zealand’: Environmentalism and the Green Party in the 2011 New Zealand general election. Environ. Polit., 21(6), 994–1000. https://doi.org/10.1080/09644016.2012.724219. p g Feinstein, B. C. (2004). Learning and transformation in the context of Hawaiian traditional ecological knowledge. Adult Educ. Q., 54(2), 105–120. https://doi.org/10.1177/0741713603260275. Fornell, C. & Larcker, D. F. (1981). Evaluating structural equation models with unobservable variables and measurement error. J. Mark. Res., 18(1), 39–50. https://doi.org/10.2307/3151312. Gauja, A. & Jackson, S. (2016). Australian Greens party members and supporters: Their profiles and activities. Environ. Polit., 25(2), 359-379. https://doi.org/10.1080/09644016.2015.1104803. Giddens, A. (2012). Modernity and Self Identity, Chapter 5. In CSUSM University. https://biblio.csusm.edu/sites/default/files/reserves/giddens_modernity_and_self-identity_ocr.pdf. Gill, J. D., Crosby, L. A., & Taylor, J. R. (1986). Ecological concern, attitudes, and social norms in voting b Public Opin. Q., 50(4), 537–554. https://doi.org/10.1086/269002. Gul, İ., Gedik, O., Canbaz, M., & Saraclı, S. (2023). Hizmetkar liderlik ve yenilikçi davranış arasındaki ilişkide calışan sadakatinin aracı rolünün PLS-SEM ile incelenmesi. Nicel Bilim. Derg., 5(2), 29–50. https://doi.org/10.51541/nicel.1139405. p g J., Anderson, R., Tatham, R., & Black, W. (1998). Multivariate Data Analysis. 5th Edition, Prentice Ha New Jerse Hair, J., Anderson, R., Tatham, R., & Black, W. (1998). Multivariate Data Analysis. 5th Edition, Prentice Hall, New Jersey. https://www.scirp.org/(S(351jmbntvnsjt1aadkozje))/reference/referencespapers.aspx?referenceid=1051631. https://www.scirp.org/(S(351jmbntvnsjt1aadkozje))/reference/referencespapers.aspx?referenceid=1051631. Hair, J. F., Hult, G. T. M., Ringle, C. M., & Sarstedt, M. (2017). A Primer on Partial Least Squares Structural Equation Modeling (PLS-SEM) Second Edition. Los Angeles: Sage. Hair, J. F., Hult, G. T. M., Ringle, C. M., & Sarstedt, M. (2017). A Primer on Partial Least Squares Structural Equation Modeling (PLS-SEM) Second Edition. Los Angeles: Sage. Hair, J. F., Ringle, C. M., & Sarstedt, M. (2011a). References https://doi.org/10.1007/s10708-016-9746-7. Levine, D. S. & Strube, M. J. (2012). Environmental attitudes, knowledge, intentions and behaviors among college students. J. Soc. Psychol., 152(3), 308–326. https://doi.org/10.1080/00224545.2011.604363. Marcoulides, G. A. & Saunders, C. (2006). Editor’s comments: PLS: A silver bullet? MIS Quarterly, 30(2), 3–9. https://doi.org/10.2307/25148727. McDonald, R. P. (1996). Path analysis with composite variables. Multivar. Behav. Res., 31(2), 2 https://doi.org/10.1207/s15327906mbr3102_5. Mezirow, J. (1994). Understanding transformation theory. Adult Educ. Q., 44(4), 222–244. https://doi.org/10.1177/0741713694044004. p g Milton, B., Cleveland, E., & Bennett-Gates, D. (1995). Changing perceptions of nature, self, and others: A report on a park/school program. J. Environ. Educ., 26(3), 32–39. https://doi.org/10.1080/00958964.1995.9941443. p g Milton, B., Cleveland, E., & Bennett-Gates, D. (1995). Changing perceptions of nature, self, and others: A report on a park/school program. J. Environ. Educ., 26(3), 32–39. https://doi.org/10.1080/00958964.1995.9941443. Mpofu, T. P. (2013). Environmental challenges of urbanization: A case study for open green space management. R J A i E i M 2(4) 105 110 on a park/school program. J. Environ. Educ., 26(3), 32–39. https://doi.org/10.1080/00958964.1995.9941443. Mpofu, T. P. (2013). Environmental challenges of urbanization: A case study for open green space management. Res. J. Agric. Environ. Manag., 2(4), 105–110. Mpofu, T. P. (2013). Environmental challenges of urbanization: A case study for open green space management. Res. J. Agric. Environ. Manag., 2(4), 105–110. News Waste Recycling European Environment Agency. (2023). Plastic waste and recycling in the EU: Facts and figures. News European Parliament. https://www.europarl.europa.eu/news/en/headlines/society/20181212STO21610/plastic-waste-and- News Waste Recycling European Environment Agency. (2023). Plastic waste and recycling in the EU: Facts and figures. News European Parliament. https://www.europarl.europa.eu/news/en/headlines/society/20181212STO21610/plastic-waste-and- recycling-in-the-eu-facts-and-figures. https://www.europarl.europa.eu/news/en/headlines/society/20181212STO21610/plastic-waste-and- recycling-in-the-eu-facts-and-figures. Papp, Z. (2022). Environmental attitudes, environmental problems and party choice, A large-N comparati Polit. Geogr., 97, 102652. https://doi.org/10.1016/j.polgeo.2022.102652. Podsakoff, P. M., MacKenzie, S. B., Lee, J. Y., & Podsakoff, N. P. (2003). Common method biases in behavioral research: a critical review of the literature and recommended remedies. J. Appl. Psychol., 88(5), 879. https://doi.org/110.1037/0021-9010.88.5.879. p g Quagraine, V. K. (2011). Urban landscape depletion in the Kumasi Metropolis. Fut. Tree. Grow. Dev. Ku 233. Ramsey, C. E. & Rickson, R. E. (1976). Environmental knowledge and attitudes. J. Environ. Educ., 8, 10–18. https://doi.org/10.1080/00958964.1976.9941552. Reisinger, Y. & Turner, L. (1999). Structural equation modeling with Lisrel: Application in tourism. Tour. Manag., 20(1), 71–88. https://doi.org/10.1016/S0261-5177(98)00104-6. Rüdig, W. (2012). The perennial success of the German Greens. Environ. Polit., 21(1), 108-130. https://doi.org/10.1080/09644016.2011.643371. p g Rudman, L. A., McLean, M. C., & Bunzl, M. (2013). References PLS-SEM: Indeed a silver bullet. J. Mark. Theory Pract., 19(2), 139–152. https://doi.org/10.2753/MTP1069-6679190202. Hair, J. F., Sarstedt, M., Pieper, T. M., & Ringle, C. M. (2012). The use of partial least squares structural equation modeling in strategic management research: A review of past practices and recommendations for future applications. Long Range Plan., 45(5–6), 320–340. https://doi.org/10.1016/j.lrp.2012.09.008. pp g g ( ) p g j p Hair, J. F., Sarstedt, M., Ringle, C. M., & Mena, J. A. (2011b). An assessment of the use of partial least squares structural equation modeling in marketing research. J. Acad. Mark. Sci., 40, 414–433. https://doi.org/10.1007/s11747-011-0261-6. p g Heimlich, J. E. & Ardoin, N. M. (2008). Understanding behavior to understand behavior change: A literature review. Environ. Educ. Res., 14(3), 215–237. https://doi.org/10.1080/13504620802148881. 169 Henseler, J., Dijkstra, T. K., Sarstedt, M., Ringle, C. M., Diamantopoulos, A., Straub, D. W., Ketchen, D. J., Hair, J. F., Hult, G. T. M., & Calantone, R. J. (2014). Common beliefs and reality about PLS: Comments on rönkkö and Evermann (2013). Organ. Res. Methods., 17(2), 182–209. https://doi.org/10.1177/1094428114526928. p g Henseler, J., Hubona, G., & Ray, P. A. (2016). Using PLS path modeling in new technology research: Updated guidelines. Ind. Manag. Data Syst., 116(1), 2–20. https://doi.org/10.1108/IMDS-09-2015-0382 Hines, J. M., Hungerford, H. R., & Tomera, A. N. (1987). Analysis and synthesis of research on responsible environmental behavior: A meta-analysis. J. Environ. Educ., 18, 1–8. https://doi.org/10.1080/00958964.1987.9943482. p g Holbert, R. L., Kwak, N., & Shah, D. V. (2003). Environmental concern, patterns of television viewing, and pro- environmental behaviors: Integrating models of media consumption and effects. J. Broadcast. Electron. Media., 47(2), 177–196. https://doi.org/10.1207/s15506878jobem4702_2. , ( ), p g j _ Höök, K. & Löwgren, J. (2012). Strong concepts: Intermediate-level knowledge in interaction design research. ACM Trans. Comput. Hum. Interact. (TOCHI), 19(3), 1–18. https://doi.org/10.1145/2362364.2362371. Hungerford, H. R. & Volk, T. L. (1990). Changing learner behavior through environmental education. J. Environ. Educ., 21, 8–21. https://doi.org/10.1080/00958964.1990.10753743. Kahn, M. E. (2002). Demographic change and the demand for environmental regulation. J. Policy Anal. Manag., 21(1), 45–62. https://doi.org/10.1002/pam.1039. Kahn, M. E. & Matsusaka, J. G. (1997). Demand for environmental goods: Evidence from voting pa California initiatives. J. Law Econ., 40(1), 137-174. Kılıç, Ç. & Kan, A. (2020). Çevre sorunlarına yönelik tutum ölçeği geliştirme çalışması. Abant Izzet Baysal Univ. Educ. Fac. J., 20(4), 1676–1690. https://doi.org/10.17240/aibuefd.2020.20.58249-540945. Korah, P. I. & Cobbinah, P. B. (2016). Juggling through Ghanaian urbanisation: Flood hazard mapping of Kumasi. Geo J., 82, 1195–1212. References When truth is personally inconvenient, attitudes change: The impact of extreme weather on implicit support for green politicians and explicit climate-change beliefs. Psychol. Sci., 24(11), 2290–2296. https://doi.org/10.1177/0956797613492775. Sakçı, G. & Uyanık, G. (2023). Sınıf öğretmenlerinin çevre sorunlarına ilişkin tutumlarının ve çevresel duyarlılıklarının incelenmesi. Int. J. Eurasia Soc. Sci. (IJOESS), 14(53), 1170–1193. https://doi.org/10.35826/ijoess.3324. p g j Saraçlı, S. & Boca, G. D. (2021). Factors influencing students environmental education for sustainable development in Romania and Turkey. Environ. Eng. Manag. J., 20(1), 1–12. 170 Saraçlı, S. & Ulucan, O. (2021). Examination of effects of radiation awareness on protection from radiation via structural equation modeling. Cumhuriyet Sci. J., 42(2), 434–440. https://doi.org/10.17776/csj.857930. Saraçlı, S., Yılmaz, V., & Arslan, T. (2014). The effects of mothers’ educational levels on university students’ environmental protection commitments and environmental behaviors. Eurasian J. Educ. Res., 55, 177–200. https://doi.org/10.14689/ejer.2014.55.11. Sciarini, P., Bornstein, N., & Lanz, B. (2007). The Determinants of Voting Choices on Environmental Issues: A Two-Level Analysis. In The dynamics of referendum campaigns: An international perspective. London: Palgrave Macmillan UK. https://doi.org/10.1057/9780230591189_11. g p g Scott, D. & Willits, F. K. (1994). Environmental attitudes and behavior: A Pennsylvania survey. Environ. Behav., 26(2), 239–260. https://doi.org/10.1177/001391659402600206. p g Stern, P. C. (2000). Toward a coherent theory of environmentally significant behavior. J. Soc. Issues., 424. https://doi.org/10.1111/0022-4537.00175. p g Uyanık, G. (2016). Öğretmen adaylarının çevre sorunlarına ilişkin bilgi düzeylerinin ve tutumlarının incelenmesi. Online Fen Egitim Derg., 1(1), 30–41. g g , ( ), Vaske, J. J. & Donnelly, M. P. (1999). A value-attitude-behavior model predicting wildland preservation voting intentions. Soc. Nat. Resour., 12(6), 523–537. https://doi.org/10.1080/089419299279425 p g WHO. (2013). Global Health Observatory data repository. Household Air Pollution. http://apps.who.int/gho/data/node.main.125?lang=en. Williamson, D. & Lynch‐Wood, G. (2001). A new paradigm for SME environmental practice. TQM Mag., 13(6), 424–433. https://doi.org/10.1108/EUM0000000006179. Wynveen, C., Kyle, G. T., & Tarrant, M. A. (2011). Study abroad experiences and global citizenship fostering proenvironmental behavior. J. Stud. Int. Educ., 16(4), 334–352. https://doi.org/10.1177/1028315311426782. 171
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Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1
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To cite this version: Miguel Abambres, Adrián Cabello. Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks - Part 1. 2020. ￿hal-02903288￿ Distributed under a Creative Commons Attribution 4.0 International License Important Notes: 1. The first author has been proposing ANN-based models in former publications, in each case designed and tested for a fairly limited amount of data (especially when empirical). Regardless the high quality of the predictions yielded by some model for the used data, the reader should not blindly accept that model as accurate for any other instances falling inside the input domain of the design dataset. Any analytical approximation model must undergo extensive validation before it can be taken as reliable (the more inputs, the larger the validation process). Models proposed until that stage are part of a learning process towards excellence. 2. If the reader can’t find any of Abambres’ papers referred as references of this work, please email the author. HAL Id: hal-02903288 https://hal.science/hal-02903288v1 Preprint submitted on 20 Jul 2020 L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignement et de recherche français ou étrangers, des laboratoires publics ou privés. HAL is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. Distributed under a Creative Commons Attribution 4.0 International License Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks Part 1 URL Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1 a Num3ros, 1600-275 Lisbon, Portugal; amgg@mailfence.com b acg.adrian@gmail.com Abstract Artificial Intelligence is a cutting-edge technology expanding very quickly into every industry. It has made its way into structural engineering and it has shown its benefits in predicting structural performance as well as saving modelling and experimenting time. This paper is the first one (out of three) of a broader research where artificial intelligence was applied to the stability and dynamic analyzes of steel grid-shells. In that study, three Artificial Neural Networks (ANN) with 8 inputs were independently designed for the prediction of a single target variable, namely: (i) the critical buckling factor for uniform loading (i.e. over the entire roof), (ii) the critical buckling factor for uniform loading over half of the roof, and (iii) the fundamental frequency of the structure. This paper addresses target variable (i). The ANN simulations were based on 1098-point datasets obtained via thorough finite element analyzes. The proposed ANN for the prediction of the critical buckling factor in steel grid-shells under uniform loading yields mean and maximum errors of 1.1% and 16.3%, respectively, for all 1098 data points. Only in 10.6% of those examples (points), the prediction error exceeds 3%. Keywords: Artificial Neural Networks, Soft Computing, Formula, Structural Engineering, Dataset, Grid- Shell Design, Lightweight Engineering, Buckling, Dynamic Analysis. © 2020 by Abambres and Cabello Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 1. Introduction It is not easy to trace back the origin of grid-shells but Shukhov´s diagrids are probably the most agreed starting point (Edemskaya 2016). Especially when referring to modern steel grid-shells, his roof for the Vyksa workshop can be regarded the first double-curvature lattice roof. Yet it is not until the end of the 80’s, and especially the 90’s, that they became really popular through the work of engineers like Schlaich and Schober (Schlaich 1996). Grid-shells are transparent, thin and typically exhibit high structural efficiency. Their design and fabrication are high precision jobs where tolerances are tight and flexibility low (Schlaich 2009). It is for these reasons that a suitable concept design that understands its failure mode is paramount down the line. This paper is the first one (out of three) of a broader research where artificial intelligence was applied to the stability and dynamic analyzes of steel grid-shells of paraboloid shape supported on a horizontal plane (see Fig. 1.1). In that study, three Artificial Neural Networks (ANN) with 8 inputs were independently designed for the analytical prediction of a single target variable, namely: (i) the critical (i.e. for the 1st mode) buckling factor for uniform loading (i.e. over the entire roof), (ii) the critical buckling factor for uniform loading over half of the roof, and (iii) the fundamental frequency of the structure. This paper provides a set of equations to obtain the critical buckling factor of the structure under uniform loading, where the latter is defined as the critical load / (external load + selfweight). That factor provides a good indication of the stability of a structure, even though a geometrically non-linear analysis is still mandatory for the final design. The 1st buckling mode identified in the analysis can be global or local, whichever is the lowest. The ANN was designed for a 1098-point dataset obtained via finite element analyzes. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 1.1. 1st buckling mode of a paraboloid shell (model 1030) supported along its perimeter. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 1.1. 1st buckling mode of a paraboloid shell (model 1030) supported along its perimeter. Fig. 1.1. 1st buckling mode of a paraboloid shell (model 1030) supported along its perimeter. 1. Introduction The characteristics of the finite element (FE) modelling carried out for data gathering are defined in section 2.1. The FE models meet some predetermined variables defining the scope under which the performed research is valid (section 2.2). The state of the art regarding the stability of grid-shells was thoroughly expounded by Gioncu (1994). Most of the available analytical solutions predicting buckling of reticulated shells resort to the homogenization technique, treating the structure as a continuum shell (Dulácska and Kollár 2000, Kato 2005, Lefevre 2015). The analytical solution presented in this paper doesn’t rely on this simplification. To the knowledge of the authors it hasn’t been formulated yet analytical models describing the buckling or dynamic behaviors of the family of grid-shells addressed in the current study. 2.1 Modelling techniques Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 1.3. Procedure carried out to rotate each beam’s coordinate system in all grid-shells. Fig. 1.3. Procedure carried out to rotate each beam’s coordinate system in all grid-shells. After orienting the bars, another VB script was run to generate 1098 distinct FE models from the 160 grid-shell geometries, by varying the parameters external load q, bar width a, bar breadth b, and node stiffness Kn, as explained in 2.2. A last VB routine run all models and stored the relevant results in a text file. The set of 1098 FE models used to collect the data that fed the neural network simulations, includes a bulk of reasonably suitable designs but also covers unrealistic under/over-conservative ones, which is precisely what makes the proposed ANN- based tool useful. The GSA software is valid to analyze grid-shell structures since it has been successfully used on numerous occasions in the past, either as a design or validation tool. Examples range from steel shells (Dini 2013, Olsson 2012), to timber shells (Kuijvenhoven 2009, Toussaint 2007) or composite material shells (du Peloux 2013, Tayeb 2015). 2.1 Modelling techniques A topology has been defined parametrically on Rhinoceros 3D (McNeel 2014) + Grasshopper (Rutten 2014), as illustrated in Fig. 1.2. The base geometry is a paraboloid shell obtained by means of two translational parabolas, the generatrix and Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL the directrix. The translational technique has the virtue of leading to flat quadrilateral surfaces that can be easily covered with planar glass panes (Pottmann 2014, Schober 2016). the directrix. The translational technique has the virtue of leading to flat quadrilateral surfaces that can be easily covered with planar glass panes (Pottmann 2014, Schober 2016). Hundred and sixty (160) different paraboloids have been generated where the main dimensions L1, L2, and h, have been varied along with the spacing s between beam nodes (see Fig. 1.2), where the latter remains constant in each model. The domains considered for those variations are addressed in section 2.2. Fig. 1.2. Top view (left), side view (center), and perspective view (right) of the parametric topology. Fig. 1.2. Top view (left), side view (center), and perspective view (right) of the parametric topology. The aforementioned geometries were exported to the FE package GSA (Oasys 2010), where all line segments (beams) were first transformed into beam FEs with 6 DOF (degree of freedom) nodes, and later split into 3 equal elements as result of the sensitivity study explained in section 2.3. At this stage, a Visual Basic (VB) script was run to rotate each rectangular beam (i.e., around its longitudinal axis) by an angle , illustrated in Fig. 1.3 as the angle between the default beam local axis 𝑽𝟎 ⃗⃗⃗⃗ (following global Z) and 𝑽𝟐x𝑽𝟏 ⃗⃗⃗⃗⃗⃗⃗⃗⃗⃗⃗⃗ (the cross product between 𝑽𝟐 ⃗⃗⃗⃗ – vector joining transversally adjacent nodes to the beam, and 𝑽𝟏 ⃗⃗⃗⃗ – vector joining beam nodes). This technique doesn´t provide the mathematically exact normal to the paraboloid surface (Makin 2006) but it leads to equal angles  between the bar width and the supported glass panes, which is convenient engineering wise. Abambres M, Cabello A (2020). 2.2 Modelling inputs The decision about the number of inputs to consider was a trade-off between (i) the versatility of the final ANN tool, and (ii) the time needed to perform all numerical simulations for data gathering – the more input variables, the more data points (no. of Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL different FE models) are needed to guarantee acceptable accuracy. The following parameters were deemed unchanged in all numerical simulations: different FE models) are needed to guarantee acceptable accuracy. The following parameters were deemed unchanged in all numerical simulations: different FE models) are needed to guarantee acceptable accuracy. The following parameters were deemed unchanged in all numerical simulations: - Beam Material: structural steel with linear elastic properties according to EN 1993-1-1 (2005), namely Young’s modulus E = 210 GPa, shear modulus G = 81 GPa, and Poisson´s ratio  = 0.3. The analyzed models include the self-weight of the steel considering a material density of 7.85 t/m3. - Roofing panels: the weight of the panels is small compared to that of the structural steel (if made of glass or polycarbonate) or even negligible (in case of ETFE). This weight is to be computed as part of the additional load q. - Boundary conditions: the paraboloids lay on a horizontal plane, defining an ellipse (see top view in Fig. 1.2). All nodes belonging to that plane were translationally fixed and rotationally constrained with the same bending stiffness (Kn) used for all grid-shell nodes. - Bracings: No (cable-)bracings were applied to any grid-shell. Examples of this type of structure are the Cabot Circus in Bristol or the Joe and Rika Mansueto Library in Chicago, among others. Tab. 1.1 shows the 8 (independent) input variables considered in all parts of this research, along with the corresponding upper and lower limit values they can take. Each of the 1098 distinct FE models corresponds to a specific combination of values taken by those variables. Tab. 1.1 also indicates the ANN input node corresponding to each variable. Further considerations about those variables read (recall Fig. 1.2): - Main dimensions of the paraboloid footprint (L1/2 and L2/2): the aspect ratio 1 ≤𝐿1 𝐿2 ⁄ ≤2 is always fulfilled. 2.2 Modelling inputs - Main dimensions of the paraboloid footprint (L1/2 and L2/2): the aspect ratio 1 ≤𝐿1 𝐿2 ⁄ ≤2 is always fulfilled. - Height of the paraboloid (h): the rise / span ratio is limited to 0.15 ≤ℎ𝐿2 ⁄ ≤0.5. This is the range recommended by Schober (2016) for dome caps under uniform loading. For ratios below 0.14, the material usage and the risk of buckling increase considerably. - Beam spacing (s): it is the beam spacing in both directions (or the dimension of all grid-shell planar and squared panes – see Fig. 1.2), and the values taken lay Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL approximately in the range observed in the long list of built projects referenced by Schober (2016). - External load (q): It is uniformly distributed over the roof surface, with vertical direction and pointing downwards. It takes random values between 0 kPa and 3.5 kPa. - Beam cross-section dimensions (a and b): the cross-section of all beams is rectangular and solid. Its dimensions come (roughly) from the range of values employed in the shells cited in Schober (2016). - Bending Stiffness of Grid-Shell Nodes (Kn): Considering appropriate connection stiffness is quite important, as demonstrated by Hwang (2010) when investigating its effects on grid-shells. From the several bolted systems he studied, rotational stiffness was approximately in the domain of 30 to 130 kNm/rad. Since the present study intends to be also applicable to stiffer connections (bolted or welded), the adopted Kn took values within 20 – 50000 kNm/rad, following the distribution shown in Tab. 1.2. For the sake of computational time, the rotational stiffness was not split into two variables – one for each bending axis, having assumed KnXX = KnYY = Kn. - Bending Stiffness of Grid-Shell Nodes (Kn): Considering appropriate connection stiffness is quite important, as demonstrated by Hwang (2010) when investigating its effects on grid-shells. From the several bolted systems he studied, rotational stiffness was approximately in the domain of 30 to 130 kNm/rad. Since the present study intends to be also applicable to stiffer connections (bolted or welded), the adopted Kn took values within 20 – 50000 kNm/rad, following the distribution shown in Tab. 1.2. 2.2 Modelling inputs For the sake of computational time, the rotational stiffness was not split into two variables – one for each bending axis, having assumed KnXX = KnYY = Kn. Tab. 1.1. Variables and ranges of values considered in the dataset. INPUT VARIABLES ANN INPUT VALUES min max average Grid-Shell Geometry L1 /2 (m) 1 5 25 19.11 L2 /2 (m) 2 5 50 28.86 h (m) 3 2 10 6.05 s (m) 4 0.9 1.5 1.20 External Load q (kN/m2) 5 0 3.5 1.71 Beam Cross-Section b (mm) 6 30 200 114.73 a (mm) 7 30 200 114.39 Bending Stiffness of Grid-Shell Nodes Kn (kNm / rad) 8 20 49527 4989.15 OUTPUT VARIABLE Critical Buckling Factor for Uniform Loading (-) Tab. 1.1. Variables and ranges of values considered in the dataset. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Tab. 2.2. Node bending stiffness (Kn) distribution for all 1098 FE models. Probability 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 1/13 Kn random From: 20 50 80 120 200 320 510 810 1300 2100 3600 8000 20000 value To: 50 80 120 200 320 510 810 1300 2100 3600 8000 20000 50000 The 1098-point dataset considered in ANN simulations is available in Abambres and Cabello (2020). 2.3 Sensitivity studies the fixed connection model respect to 4 subdivisions Percentage of the result Model 323 2.3 Sensitivity studies Two sensitivity studies were carried out prior to the 1098 FE analyzes in order to better decide which mesh density and node stiffness values to adopt in the final FE models. Three models with different geometry were used for that purpose: model 323 (L1 = 50, L2 = 100, h = 10, s = 1.3), model 1030 (L1 = 50, L2 = 95, h = 6, s = 0.9), and model 1071 (L1 = 15, L2 = 15, h = 2, s = 0.9). The first analysis aimed to understand how sensitive the FE models were to the mesh density. The grid-shell beams (aka bars) between nodes have been subdivided into 1, 2, 3 and 4 beam FE. It was adopted Kn = 990 kNm/rad for all of them. Assuming that 4 elements give the most accurate results, Tab. 1.3 (left) shows the remaining results as a percentage of the former. It turned out that any loss in accuracy when predicting the buckling factor with less than 4 subdivisions is indiscernible since it lies within the noise of the convergence. Thus, there isn’t much difference in the prediction of the fundamental frequency either. Since the computational time rises with the number of FEs, the authors have opted for 3 FEs per beam. The second study (Tab. 1.3, right) allowed to determine which node bending stiffness (Kn) yields results that are close enough to those obtained with fixed connections (i.e., infinite stiffness). Three subdivisions were adopted for the beam elements. It was observed that Kn = 50000 kNm/rad yields differences lower than 1% when the results are compared with the fixed connection counterparts, and for that reason that was the adopted upper bound for Kn. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL , Tab. 3.3. Sensitivity analysis to determine the suitable (i) number of FEs in each beam (left), and (ii) Kn upper bound (aiming to integrate a fixed connection scenario). 2.3 Sensitivity studies Subdivisions 1 2 3 4 990 990 990 990 Kn [kNm/rad] 50 200 1000 10000 50000 Fixed 1st Buckling factor (fully loaded) 100 100 100 100 26 48 79 97 99.38 100 1st Buckling factor (half loaded) 100 100 100 100 22 46 77 97 99.44 100 Fundamental frequency 99.98 100 100 100 32 52 79 97 99.38 100 Computational time (seconds) 24.5 37.2 50.3 64.0 1st Buckling factor (fully loaded) 100 100 100 100 22 43 73 96 99.11 100 1st Buckling factor (half loaded) 100 100 100 100 18 40 72 96 99.10 100 Fundamental frequency 99.98 99.98 99.98 100 29 47 74 96 99.14 100 Computational time (seconds) 2.2 2.6 3.3 4.2 1st Buckling factor (fully loaded) 100 99.98 99.98 100 26 49 78 97 99.34 100 1st Buckling factor (half loaded) 99.98 99.98 100 100 21 39 70 96 99.17 100 Fundamental frequency 99.79 99.96 100 100 43 60 81 97 99.34 100 Computational time (seconds) 46.5 73.2 98.6 117.7 Model 1030 Model 1071 Percentage of the result w.r.t. the fixed connection model respect to 4 subdivisions Percentage of the result Model 323 Tab. 3.3. Sensitivity analysis to determine the suitable (i) number of FEs in each beam (left), and (ii) Kn upper bound (aiming to integrate a fixed connection scenario). Tab. 3.3. Sensitivity analysis to determine the suitable (i) number of FEs in each beam (left), and (ii) Kn upper bound (aiming to integrate a fixed connection scenario). 2.3 Sensitivity studies Subdivisions 1 2 3 4 990 990 990 990 Kn [kNm/rad] 50 200 1000 10000 50000 Fixed 1st Buckling factor (fully loaded) 100 100 100 100 26 48 79 97 99.38 100 1st Buckling factor (half loaded) 100 100 100 100 22 46 77 97 99.44 100 Fundamental frequency 99.98 100 100 100 32 52 79 97 99.38 100 Computational time (seconds) 24.5 37.2 50.3 64.0 1st Buckling factor (fully loaded) 100 100 100 100 22 43 73 96 99.11 100 1st Buckling factor (half loaded) 100 100 100 100 18 40 72 96 99.10 100 Fundamental frequency 99.98 99.98 99.98 100 29 47 74 96 99.14 100 Computational time (seconds) 2.2 2.6 3.3 4.2 1st Buckling factor (fully loaded) 100 99.98 99.98 100 26 49 78 97 99.34 100 1st Buckling factor (half loaded) 99.98 99.98 100 100 21 39 70 96 99.17 100 Fundamental frequency 99.79 99.96 100 100 43 60 81 97 99.34 100 Computational time (seconds) 46.5 73.2 98.6 117.7 Model 1030 Model 1071 Percentage of the result w.r.t. the fixed connection model respect to 4 subdivisions Percentage of the result Model 323 Tab. 3.3. Sensitivity analysis to determine the suitable (i) number of FEs in each beam (left), and (ii) Kn upper bound (aiming to integrate a fixed connection scenario). and (ii) Kn upper bound (aiming to integrate a fixed connection scenario). Subdivisions 1 2 3 4 990 990 990 990 Kn [kNm/rad] 50 200 1000 10000 50000 Fixed 1st Buckling factor (fully loaded) 100 100 100 100 26 48 79 97 99.38 100 1st Buckling factor (half loaded) 100 100 100 100 22 46 77 97 99.44 100 Fundamental frequency 99.98 100 100 100 32 52 79 97 99.38 100 Computational time (seconds) 24.5 37.2 50.3 64.0 1st Buckling factor (fully loaded) 100 100 100 100 22 43 73 96 99.11 100 1st Buckling factor (half loaded) 100 100 100 100 18 40 72 96 99.10 100 Fundamental frequency 99.98 99.98 99.98 100 29 47 74 96 99.14 100 Computational time (seconds) 2.2 2.6 3.3 4.2 1st Buckling factor (fully loaded) 100 99.98 99.98 100 26 49 78 97 99.34 100 1st Buckling factor (half loaded) 99.98 99.98 100 100 21 39 70 96 99.17 100 Fundamental frequency 99.79 99.96 100 100 43 60 81 97 99.34 100 Computational time (seconds) 46.5 73.2 98.6 117.7 Model 1030 Model 1071 Percentage of the result w.r.t. 3.1 Introduction Machine learning, one of the six disciplines of Artificial Intelligence (AI) without which the task of having machines acting humanly could not be accomplished, allows us to ‘teach’ computers how to perform tasks by providing examples of how they should be done (Hertzmann and Fleet 2012). When there is abundant data (also called examples or patterns) explaining a certain phenomenon, but its theory richness is poor, machine learning can be a perfect tool. The world is quietly being reshaped by machine learning, being the Artificial Neural Network (also referred in this manuscript as ANN or neural net) its (i) oldest (McCulloch and Pitts 1943) and (ii) most powerful (Hern 2016) technique. ANNs also lead the number of practical applications, virtually covering any field of knowledge (Wilamowski and Irwin 2011, Prieto et. al 2016). In its most general form, an ANN is a mathematical model designed to perform a particular task, based in the way the human brain processes information, i.e. with the help of its processing units (the neurons). ANNs have been employed to perform several types of real-world basic tasks. Concerning functional approximation, ANN-based solutions Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL are frequently more accurate than those provided by traditional approaches, such as multi-variate nonlinear regression, besides not requiring a good knowledge of the function shape being modelled (Flood 2008). are frequently more accurate than those provided by traditional approaches, such as multi-variate nonlinear regression, besides not requiring a good knowledge of the function shape being modelled (Flood 2008). The general ANN structure consists of several nodes disposed in L vertical layers (input layer, hidden layers, and output layer) and connected between them, as depicted in Fig. 2. Associated to each node in layers 2 to L, also called neuron, is a linear or nonlinear transfer (also called activation) function, which receives the so- called net input and transmits an output (see Fig. 5). All ANNs implemented in this work are called feedforward, since data presented in the input layer flows in the forward direction only, i.e. every node only connects to nodes belonging to layers located at the right-hand-side of its layer, as shown in Fig. 2. 3.1 Introduction ANN’s computing power makes them suitable to efficiently solve small to large-scale complex problems, which can be attributed to their (i) massively parallel distributed structure and (ii) ability to learn and generalize, i.e., produce reasonably accurate outputs for inputs not used during the learning (also called training) phase. Fig. 2. Example of a feedforward neural network. Fig. 2. Example of a feedforward neural network. Further information on Artificial Neural Networks might be found in previous publications by Abambres et al. or Haykin (2009). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 3.2 Learning Each connection between 2 nodes is associated to a synaptic weight (real value), which, together with each neuron’s bias (also a real value), are the most common types of neural net unknown parameters that will be determined through learning. Learning is nothing else than determining network unknown parameters through some algorithm in order to minimize network’s performance measure, typically a function of the difference between predicted and target (desired) outputs. When ANN learning has an iterative nature, it consists of three phases: (i) training, (ii) validation, and (iii) testing. From previous knowledge, examples or data points are selected to train the neural net, grouped in the so-called training dataset. Those examples are said to be ‘labelled’ or ‘unlabeled’, whether they consist of inputs paired with their targets, or just of the inputs themselves – learning is called supervised (e.g., functional approximation, classification) or unsupervised (e.g., clustering), whether data used is labelled or unlabeled, respectively. During an iterative learning, while the training dataset is used to tune network unknowns, a process of cross-validation takes place by using a set of data completely distinct from the training counterpart (the validation dataset), so that the generalization performance of the network can be attested. Once ‘optimum’ network Fig. 3. Cross-validation - assessing network’s generalization ability. Fig. 3. Cross-validation - assessing network’s generalization ability. parameters are determined, typically associated to a minimum of the validation performance curve (called early stop – see Fig. 3), many authors still perform a final Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL assessment of model’s accuracy, by presenting to it a third fully distinct dataset called ‘testing’. Heuristics suggests that early stopping avoids overfitting, i.e. the loss of ANN’s generalization ability. One of the causes of overfitting might be learning too many input- target examples suffering from data noise, since the network might learn some of its features, which do not belong to the underlying function being modelled (Haykin 2009). 3.3 Implemented ANN features The ‘behavior’ of any ANN depends on many ‘features’, having been implemented 15 ANN features in this work (including data pre/post processing ones). For those features, it is important to bear in mind that no ANN guarantees good approximations via extrapolation (either in functional approximation or classification problems), i.e. the implemented ANNs should not be applied outside the input variable ranges used for network training. Since there are no objective rules dictating which method per feature guarantees the best network performance for a specific problem, an extensive parametric analysis (composed of nine parametric sub-analyzes) was carried out to find ‘the optimum’ net design. A description of all implemented methods, selected from state of art literature on ANNs (including both traditional and promising modern techniques), is presented next – Tabs. 2-4 present all features and methods per feature. The whole work was coded in MATLAB (The Mathworks, Inc. 2017), making use of its neural network toolbox when dealing with popular learning algorithms (1-3 in Tab. 4). Each parametric sub-analysis (SA) consists of running all feasible combinations (also called ‘combos’) of pre-selected methods for each ANN feature, in order to get performance results for each designed net, thus allowing the selection of the best ANN according to a certain criterion. The best network in each parametric SA is the one exhibiting the smallest average relative error (called performance) for all learning data. It is worth highlighting that, in this manuscript, whenever a vector is added to a matrix, it means the former is to be added to all columns of the latter (valid in MATLAB). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Tab. 2. Implemented ANN features (F) 1-5. FEATURE METHOD F1 F2 F3 F4 F5 Qualitative Var Represent Dimensional Analysis Input Dimensionality Reduction % Train-Valid-Test Input Normalization 1 Boolean Vectors Yes Linear Correlation 80-10-10 Linear Max Abs 2 Eq Spaced in ]0,1] No Auto-Encoder 70-15-15 Linear [0, 1] 3 - - - 60-20-20 Linear [-1, 1] 4 - - Ortho Rand Proj 50-25-25 Nonlinear 5 - - Sparse Rand Proj - Lin Mean Std 6 - - No - No Tab. 2. Implemented ANN features (F) 1-5. 3.3.3 Input Dimensionality Reduction (feature 3) When designing any ANN, it is crucial for its accuracy that the input variables are independent and relevant to the problem (Gholizadeh et al. 2011, Kasun et al. 2016). There are two types of dimensionality reduction, namely (i) feature selection (a subset of the original set of input variables is used), and (ii) feature extraction (transformation of initial variables into a smaller set). In this work, dimensionality reduction is never performed when the number of input variables is less than six. The implemented methods are described next. 3.3.2 Dimensional Analysis (feature 2) The most widely used form of dimensional analysis is the Buckingham's π-theorem, which was implemented in this work as described in Bhaskar and Nigam (1990). 3.3.1 Qualitative Variable Representation (feature 1) A qualitative variable taking n distinct ‘values’ (usually called classes) can be represented in any of the following formats: one variable taking n equally spaced values in ]0,1], or 1-of-n encoding (boolean vectors – e.g., n=3: [1 0 0] represents class 1, [0 1 0] represents class 2, and [0 0 1] represents class 3). After transformation, qualitative variables are placed at the end of the corresponding (input or output) dataset, in the same original order. Tab. 3. Implemented ANN features (F) 6-10. FEATURE METHOD F6 F7 F8 F9 F10 Output Transfer Output Normalization Net Architecture Hidden Layers Connectivity 1 Logistic Lin [a, b] = 0.7[φmin, φmax] MLPN 1 HL Adjacent Layers 2 - Lin [a, b] = 0.6[φmin, φmax] RBFN 2 HL Adj Layers + In-Out 3 Hyperbolic Tang Lin [a, b] = 0.5[φmin, φmax] - 3 HL Fully-Connected 4 - Linear Mean Std - - - 5 Bilinear No - - - 6 Compet - - - - 7 Identity - - - - Tab. 3. Implemented ANN features (F) 6-10. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Tab. 4. Implemented ANN features (F) 11-15. Tab. 4. Implemented ANN features (F) 11-15. FEATURE METHOD F11 F12 F13 F14 F15 Hidden Transfer Parameter Initialization Learning Algorithm Performance Improvement Training Mode 1 Logistic Midpoint (W) + Rands (b) BP - Batch 2 Identity-Logistic Rands BPA - Mini-Batch 3 Hyperbolic Tang Randnc (W) + Rands (b) LM - Online 4 Bipolar Randnr (W) + Rands (b) ELM - - 5 Bilinear Randsmall mb ELM - - 6 Positive Sat Linear Rand [-Δ, Δ] I-ELM - - 7 Sinusoid SVD CI-ELM - - 8 Thin-Plate Spline MB SVD - - - 9 Gaussian - - - - 10 Multiquadratic - - - - 11 Radbas - - - - Linear Correlation In this feature selection method, all possible pairs of input variables are assessed with respect to their linear dependence, by means of the Pearson correlation Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL coefficient RXY, where X and Y denote any two distinct input variables. For a set of n data points (xi, yi), the Pearson correlation is defined by ( )( ) ( ) ( ) 1 2 2 1 1 ( , ) ( ) ( ) n i i i XY n n i i i i x x y y Cov X Y R Var X Var Y x x y y = = = − − = = − −    , (1) (1) where (i) Var(X) and Cov(X, Y) are the variance of X and covariance of X and Y, respectively, and (ii) 𝑥̅ and 𝑦̅ are the mean values of each variable. In this work, cases where |𝑅𝑋𝑌| ≥0.99 indicate that one of the variables in the pair must be removed from the ANN modelling. The one to be removed is the one appearing less in the remaining pairs (𝑋, 𝑌) where |𝑅𝑋𝑌| ≥0.99. Once a variable is selected for removal, all pairs (𝑋, 𝑌) involving it must be disregarded in the subsequent steps for variable removal. Orthogonal and Sparse Random Projections This is another feature extraction technique aiming to reduce the dimension of input data Y1 (Q1 x P) while retaining the Euclidean distance between data points in the new feature space. This is attained by projecting all data along the (i) orthogonal or (ii) sparse random matrix A (Q1 x Q2, Q2 < Q1), as described by Kasun et al. (2016). Auto-Encoder This feature extraction technique uses itself a 3-layer feedforward ANN called auto- encoder (AE). After training, the hidden layer output (y2p) for the presentation of each problem’s input pattern (y1p) is a compressed vector (Q2 x 1) that can be used to replace the original input layer by a (much) smaller one, thus reducing the size of the ANN model. In this work, Q2=round(Q1/2) was adopted, being round a function that rounds the argument to the nearest integer. The implemented AE was trained using the ‘trainAutoencoder(…)’ function from MATLAB’s neural net toolbox. In order to select the best AE, 40 AEs were simulated, and their performance compared by means of the performance variable defined in sub-section 3.4. Each AE considered distinct (random) initialization parameters, half of the models used the ‘logsig’ hidden transfer functions, and the other half used the ‘satlin’ counterpart, being the identity function the common option for the output activation. In each AE, the maximum number of epochs – number of times the whole training dataset is presented to the network during learning, was defined (regardless the amount of data) by 1 1 3000, 8 max 1500, 8 Q epochs Q   =    . (2) (2) Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Concerning the learning algorithm used for all AEs, no L2 weight regularization was employed, which was the only default specification not adopted in ‘trainAutoencoder(…)’. 3.3.4 Training, Validation and Testing Datasets (feature 4) Four distributions of data (methods) were implemented, namely pt-pv-ptt = {80-10- 10, 70-15-15, 60-20-20, 50-25-25}, where pt-pv-ptt represent the amount of training, validation and testing examples as % of all learning data (P), respectively. Aiming to divide learning data into training, validation and testing subsets according to a predefined distribution pt-pv-ptt, the following algorithm was implemented (all variables are involved in these steps, including qualitative ones after converted to numeric – see 3.3.1): 1) Reduce pt-pv-ptt values by 10 units each. 2) For each variable q (row) in the complete input dataset, compute its minimum and maximum values. 3) Select all patterns (if some) from the learning dataset where each variable takes either its minimum or maximum value. Those patterns must be included in the training dataset, regardless what pt is. However, if the number of patterns is lower than the rounding of pt * P/100, more patterns should be added to the training set in the following way: a. Compute the number of patterns (Lpt) that need to be added to the initially selected training patterns to equal round(pt * P/100). b. Randomly select 10.000 combinations of Lpt patterns from all those not included in the training set defined prior a). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL c. For each combination/scenario in b), add those Lpt patterns to the set of training patterns defined prior a), and label all remaining learning patterns as “validation+testing”. d. For each scenario in c), and for each pattern labeled as “validation+testing”, check if that pattern has at least one input variable that takes a value not taken by any pattern in the training set. If it hasn´t, then that pattern should be moved to the training set. e. Among all 10.000 scenarios of training and “validation+testing” subsets addressed in b) till d), the “winner” should be the one guaranteeing the amount of training data (Pt*) closest to round(pt * P/100). f. If the winning training set selected in e) guarantees | Pt* / P - pt | ≤ 0.2, then that becomes the training data to be taken for simulation. Otherwise, the training data should be selected according to step 2 in subsection 3.3.4 of Abambres et al. (2018). 4) Increase pt-pv-ptt values by 10 units each (to re-obtain the original input values – recall step 1). 3.3.5 Input Normalization (feature 5) The progress of training can be impaired if training data defines a region that is relatively narrow in some dimensions and elongated in others, which can be alleviated by normalizing each input variable across all data patterns. The implemented techniques are the following: 3.3.4 Training, Validation and Testing Datasets (feature 4) 5) In order to select the validation patterns, randomly select pv / (pv + ptt) of those patterns not belonging to the previously defined training dataset. The remainder defines the testing dataset. It might happen that the actual distribution pt-pv-ptt to be used in the simulation is not equal to the one imposed a priori (before step 1). It might happen that the actual distribution pt-pv-ptt to be used in the simulation is not equal to the one imposed a priori (before step 1). Nonlinear Proposed by Pu and Mesbahi (2006), although in the context of output normalization, the only nonlinear normalization method implemented for input data reads ( ) ( ) ( ) ( ) 1 1 1 , , , ( ) 10 n t Y i j Y i j sign Y i j C i = + , (5) (5) where (i) Y1(i, j) is the non-normalized value of input variable i for pattern j, (ii) t is the number of digits in the integer part of Y1(i, j), (iii) sign(…) yields the sign of the argument, and (iv) C(i) is the average of two values concerning variable i, C1(i) and C2(i), where the former leads to a minimum normalized value of 0.2 for all patterns, and the latter leads to a maximum normalized value of 0.8 for all patterns. Linear [0, 1] and [-1, 1] A linear transformation for each input variable (i), mapping values in Y1(i,:) from [a*, b*]=[min(Y1(i,:)), max(Y1(i,:))] to a generic range [a, b], is obtained from ( ) ( ) ( ) ( ) 1 1 ,: * { ,: * } ) * ( n Y i a Y a a b b i a − − − = + . (4) (4) Ranges [a, b]=[0, 1] and [a, b]=[-1, 1] were considered. Ranges [a, b]=[0, 1] and [a, b]=[-1, 1] were considered. Ranges [a, b]=[0, 1] and [a, b]=[-1, 1] were considered. Ranges [a, b]=[0, 1] and [a, b]=[-1, 1] were considered. Linear Max Abs Lachtermacher and Fuller (1995) proposed a simple normalization technique given by Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL   1 1 1 ( ,:) { } ( ,:) max ( ,:) n Y i Y i Y i = , (3) , (3) (3) where {Y1}n (i, :) and Y1 (i, :) are the normalized and non-normalized values of the ith input variable for all learning patterns, respectively. Notation ‘:’ in the column index, indicate the selection of all columns (learning patterns). Linear Mean Std Tohidi and Sharifi (2014) proposed the following technique Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL ( ) ( ) ( ) ( ) 1 1 1 ,: 1 ,: ,: ,: Y i n Y i Y i Y i   − = , (6) (6) (6) where 𝜇𝑌1(𝑖,:) and 𝜎𝑌1(𝑖,:) are the mean and standard deviation of all non-normalized values (all patterns) stored by variable i. Logistic The most usual form of transfer functions is called Sigmoid. An example is the logistic function given by 1 ( ) 1 s s e  − = + . (7) (7) ic Tang Bilinear The implemented Bilinear function is defined as The implemented Bilinear function is defined as The implemented Bilinear function is defined as , 0 ( ) 0, 0 s s s s    =    . (9) (9) ntity Hyperbolic Tang The Hyperbolic Tangent function is also of sigmoid type, being defined as ( ) s s s s e e s e e  − − − = + . (8) ( ) s s s s e e s e e  − − − = + . (8) ( ) s s s s e e s e e  − − − = + (8) ilinear Bilinear 3.3.7 Output Normalization (feature 7) Normalization can also be applied to the output variables so that, for instance, the amplitude of the solution surface at each variable is the same. Otherwise, training may tend to focus (at least in the earlier stages) on the solution surface with the greatest amplitude (Flood and Kartam 1994a). Normalization ranges not including the zero value might be a useful alternative since convergence issues may arise due to the presence of many small (close to zero) target values (Mukherjee et al. 1996). Four normalization methods were implemented. The first three follow eq. (4), where (i) [a, b] = 70% [φmin, φmax], (ii) [a, b] = 60% [φmin, φmax], and (iii) [a, b] = 50% [φmin, φmax], being [φmin, φmax] the output transfer function range, and [a, b] determined to be centered within [φmin, φmax] and to span the specified % (e.g., (b-a) = 0.7 (φmax - φmin)). Whenever the output transfer functions are unbounded (Bilinear and Identity), it was considered [a, b] = [0, 1] and [a, b] = [-1, 1], respectively. The fourth normalization method implemented is the one described by eq. (6). Identity The Identity activation is often employed in output neurons, reading . (10) (10) Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Multi-Layer Perceptron Network (MLPN) Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 5. Generic neuron placed anywhere in the MLPN of Fig. 4 (l = 2,…, L). Fig. 5. Generic neuron placed anywhere in the MLPN of Fig. 4 (l = 2,…, L). Multi-Layer Perceptron Network (MLPN) This is a feedforward ANN exhibiting at least one hidden layer. Fig. 2 depicts a 3- 2-1 MLPN (3 input nodes, 2 hidden neurons and 1 output neuron), where units in each layer link to nodes located ahead only. The network is said to be partially-connected (PC) since no connections across layers are allowed (between the source and output layers, in this case). At this moment, it is appropriate to define the concept of fully- connected (FC) ANN. Although traditionally, the network shown in Fig. 2 would be called FC, in this work a FC feedforward network is characterized by having each node connected to every node in a different layer placed forward – any other type of feedforward network is said to be PC. According to Wilamowski (2009), PC MLPNs are less powerful than MLPN where connections across layers are allowed, which usually lead to smaller networks (less neurons). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 4 represents a generic MLFN composed of L layers, where l (l = 1,…, L) is a generic layer and ‘ql’ a generic node, being q = 1,…, Ql its position in layer l (1 is reserved to the top node). Fig. 5 represents the model of a generic neuron (l = 2,…, L), where (i) p represents the data pattern presented to the network, (ii) subscripts m = 1,…, Qn and n = 1,…, l-1 are summation indexes representing all possible nodes connecting to neuron ‘ql’ (recall Fig. 4), (iii) bql is neuron’s bias, and (iv) wmnql represents the synaptic weight connecting units ‘mn’ and ‘ql’. Neuron’s net input for the presentation of pattern p (Sqlp) is defined as Q 1 1 1 , n l lp m n q mnp mnp mnp mnql ql mnql mnql w b w w S y y y − = = = +  , (11) (11) where ym1p is the value of the mth network input concerning example p. The output of a generic neuron can then be written as (l = 2,…, L) ( ) l qlp qlp y S  = , (12) (12) where φl is the transfer function used for all neurons in layer l. Fig. 4. Generic multi-layer feedforward network. Fig. 4. Generic multi-layer feedforward network. Abambres M, Cabello A (2020). Radial-Basis Function Network (RBFN) Although having similar topologies, RBFN and MLPN behave very differently due to distinct hidden neuron models – unlike the MLPN, RBFN have hidden neurons behaving differently than output neurons. According to Xie et al. (2011), RBFN (i) are specially recommended in functional approximation problems when the function surface exhibits regular peaks and valleys, and (ii) perform more robustly than MLPN when dealing with noisy input data. Although traditional RBFN have 3 layers, a generic multi-hidden layer (see Fig. 4) RBFN is allowed in this work, being the generic hidden neuron’s model concerning node ‘l1l2’ (l1 = 1,…,Ql2, l2 = 2,…, L-1) presented in Fig. 6. In this model, (i) 𝑣𝑙1𝑙2𝑝 and 𝜉𝑙1𝑙2 (called RBF center) are vectors of the same size (𝜉𝑧𝑙1𝑙2 denotes de z component of vector 𝜉𝑙1𝑙2, and it is a network unknown), being the former associated to the presentation of data pattern p, (ii) 𝜎𝑙1𝑙2 is called RBF width (a positive scalar) and also belongs, along with synaptic weights and RBF centers, to the set of network unknowns to be determined through learning, (iii) 𝜑𝑙2 is the user-defined radial basis (transfer) function (RBF), described in eqs. (20)-(23), and (iv) 𝑦𝑙1𝑙2𝑝 is neuron’s output when pattern p is presented to the network. In ANNs not involving learning algorithms 1-3 in Tab. 4, vectors 𝑣𝑙1𝑙2𝑝 and 𝜉𝑙1𝑙2 are defined as (two versions of 𝑣𝑙1𝑙2𝑝 where implemented and the one yielding the best results was selected) Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 1 2 2 2 1 2 2 2 1 2 2 2 1 2 1 1 2 2 1( 1) 1( 1) ( 1) ( 1) ( 1) ( 1) ... ... l l p l l l p l l l z l p z l l l Q l p Q l l l v w w w y y y − − − − − − − −   =   or 1 2 2 2 2 1 2 1( 1) ( 1) ( 1) 1 and ... ... ... ... = [1, 1, 1, 10, 10, 10, 10] minimum 1 1 1 1 = min round max 2 + , 4 , , 1500 ln( ) L P max Q Q Q Q P                         (15) ( ) ( ) ( ) 2 = max min round 0.1 ,1500 , 300 max P , (15) 1 1 1 2 2 = [ , , , , maximum max max max max max 2 2 , , ] max max 1 1 1 2 2 = [ , , , , maximum max max max max max 2 2 , , ] max max 3 13 13 1 (F ) : (F ) : (F ) hntest minimum incr maxi m mu = where (i) Q1 and QL are the number of input and output nodes, respectively, (ii) P and Pt are the number of learning and training patterns, respectively, and (iii) F13 is the number of feature 13’s method (see Tab. 4). where (i) Q1 and QL are the number of input and output nodes, respectively, (ii) P and Pt are the number of learning and training patterns, respectively, and (iii) F13 is the number of feature 13’s method (see Tab. 4). Radial-Basis Function Network (RBFN) Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Radial-Basis Function Network (RBFN) l p l l l p z l p Q l p l l l l l l Q l l v y y y     − − − −   =     =   , (13) 1 2 2 2 2 1 2 1( 1) ( 1) ( 1) and ... ... l p l l l p z l p Q l p v y y y − − − −   =   , (13) , (13) 1 2 1 2 1 2 1 2 1 2 1 ... ... l l l l l zl l Q l l     −   =   whereas the RBFNs implemented through MATLAB neural net toolbox (involving learning algorithms 1-3 in Tab. 4) are based on the following definitions whereas the RBFNs implemented through MATLAB neural net toolbox (involving learning algorithms 1-3 in Tab. 4) are based on the following definitions 1 2 2 2 2 1 2 2 1 2 2 1 2 2 1 2 1 2 1 2 1( 1) ( 1) ( 1) 1( 1) ( 1) ( 1) ... ... ... ... l l p l l l p z l p Q l p l l l l l z l l l Q l l l v w w w y y y  − − − − − − − −   =     =   . (14) (14) Lastly, according to the implementation carried out for initialization purposes (described in 3.3.12), (i) RBF center vectors per hidden layer (one per hidden neuron) are initialized as integrated in a matrix (termed RBF center matrix) having the same size of a weight matrix linking the previous layer to that specific hidden layer, and (ii) RBF widths (one per hidden neuron) are initialized as integrated in a vector (called RBF width vector) with the same size of a hypothetic bias vector. Fig. 6. Generic hidden neuron l1l2 placed anywhere in the RBFN of Fig. 4 (l2 = 2,…, L-1). g. 6. Generic hidden neuron l1l2 placed anywhere in the RBFN of Fig. 4 (l2 = 2,…, L-1). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). 3.3.9 Hidden Nodes (feature 9) Inspired by several heuristics found in the literature for the determination of a suitable number of hidden neurons in a single hidden layer net (Aymerich and Serra 1998, Rafiq et al. 2001, Xu and Chen 2008), each value in hntest, defined in eq. (15), was tested in this work as the total number of hidden nodes in the model, ie the sum of nodes in all hidden layers (initially defined with the same number of neurons). The number yielding the smallest performance measure for all patterns (as defined in 3.4, with outputs and targets not postprocessed), is adopted as the best solution. The aforementioned hntest is defined by = [4, 4, 4, 10, 10, 10, 10] incr = [4, 4, 4, 10, 10, 10, 10] incr = [4, 4, 4, 10, 10, 10, 10] incr = [4, 4, 4, 10, 10, 10, 10] = [1, 1, 1, 10, 10, 10, 10] incr minimum = [1, 1, 1, 10, 10, 10, 10] minimum Bipolar The so-called bipolar sigmoid activation function mentioned in Lefik and Schrefler (2003), ranging in [-1, 1], reads 1 ( ) 1 s s e s e  − − − = + . (17) (17) ( ) e Saturating Linear 3.3.11 Hidden Transfer Functions (feature 11) Besides functions (i) Logistic – eq. (7), (ii) Hyperbolic Tangent – eq. (8), and (iii) Bilinear – eq. (9), defined in 3.3.6, the ones defined next were also implemented as hidden transfer functions. During software validation it was observed that some hidden node outputs could be infinite or NaN (not-a-number in MATLAB – e.g., 0/0=Inf/Inf=NaN), due to numerical issues concerning some hidden transfer functions and/or their calculated input. In those cases, it was decided to convert infinite to unitary values and NaNs to zero (the only exception was the bipolar sigmoid function, where NaNs were converted to -1). Other implemented trick was to convert possible Gaussian function’s NaN inputs to zero. 3.3.10 Connectivity (feature 10) For this ANN feature, three methods were implemented, namely (i) adjacent layers – only connections between adjacent layers are made possible, (ii) adjacent layers + Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL input-output – only connections between (ii1) adjacent and (ii2) input and output layers are allowed, and (iii) fully-connected (all possible feedforward connections). input-output – only connections between (ii1) adjacent and (ii2) input and output layers are allowed, and (iii) fully-connected (all possible feedforward connections). Identity-Logistic In Gunaratnam and Gero (1994), issues associated with flat spots at the extremes of a sigmoid function were eliminated by adding a linear function to the latter, reading 1 ( ) 1 s s s e  − = + + . (16) ( ) 1 s e  − + . (16) (16) Sinusoid Concerning less popular transfer functions, reference is made in Bai et al. (2014) to the sinusoid, which in this work was implemented as ( ) sin 2 s s     =     . (19) (19) Positive Saturating Linear In MATLAB neural net toolbox, the so-called Positive Saturating Linear transfer function, ranging in [0, 1], is defined as Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 1, 1 ( ) , 0 1 0, 0 s s s s s     =       . (18) ( ) , 0 1 0, 0 s s s s  =       . (18) (18) d Midpoint, Rands, Randnc, Randnr, Randsmall These are all MATLAB built-in functions. Midpoint is used to initialize weight and RBF center matrices only (not vectors). All columns of the initialized matrix are equal, being each entry equal to the midpoint of the (training) output range leaving the corresponding initial layer node – recall that in weight matrices, columns represent each node in the final layer being connected, whereas rows represent each node in the initial layer counterpart. Rands generates random numbers with uniform distribution in [-1, 1]. Randnc (only used to initialize matrices) generates random numbers with uniform distribution in [-1, 1], and normalizes each array column to 1 (unitary Euclidean norm). Randnr (only used to initialize matrices) generates random numbers with uniform distribution in [-1, 1], and normalizes each array row to 1 (unitary Euclidean norm). Randsmall generates random numbers with uniform distribution in [-0.1, 0.1]. Radial Basis Functions (RBF) Although Gaussian activation often exhibits desirable properties as a RBF, several authors (e.g., Schwenker et al. 2001) have suggested several alternatives. Following nomenclature used in 3.3.8, (i) the Thin-Plate Spline function is defined by ( ) ( ) 2 1 2 1 2 2 ln , l l l p l l s s s s v   = = − , (20) (20) (ii) the next function is employed as Gaussian-type function when learning algorithms 4-7 are used (see Tab. 4) (ii) the next function is employed as Gaussian-type function when learning algorithms 4-7 are used (see Tab. 4) ( ) 2 1 2 1 2 1 2 2 0.5 2 , s l l l p l l l l s s v e    − = = − , (21) (21) (iii) the Multiquadratic function is given by (iii) the Multiquadratic function is given by ( ) 2 1 2 1 2 1 2 2 2 , l l l p l l l l s s s v    = = − + , (22) (22) and (iv) the Gaussian-type function (called ‘radbas’ in MATLAB toolbox) used by RBFNs trained with learning algorithms 1-3 (see Tab. 4), is defined by and (iv) the Gaussian-type function (called ‘radbas’ in MATLAB toolbox) used by RBFNs trained with learning algorithms 1-3 (see Tab. 4), is defined by ( ) 2 1 2 1 2 1 2 2 , l l l p l l l l s s s v e    − = = − , (23) (23) where || … || denotes the Euclidean distance in all functions. where || … || denotes the Euclidean distance in all functions. where || … || denotes the Euclidean distance in all functions. where || … || denotes the Euclidean distance in all functions. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 3.3.12 Parameter Initialization (feature 12) The initialization of (i) weight matrices (Qa x Qb, being Qa and Qb node numbers in layers a and b being connected, respectively), (ii) bias vectors (Qb x 1), (iii) RBF center matrices (Qc-1 x Qc, being c the hidden layer that matrix refers to), and (iv) RBF width vectors (Qc x 1), are independent and in most cases randomly generated. For each ANN design carried out in the context of each parametric analysis combo, and whenever the parameter initialization method is not the ‘Mini-Batch SVD’, ten distinct simulations varying (due to their random nature) initialization values are carried out, in order to find the best solution. The implemented initialization methods are described next. 3.3.13 Learning Algorithm (feature 13) The most popular learning algorithm is called error back-propagation (BP), a first- order gradient method. Second-order gradient methods are known to have higher training speed and accuracy (Wilamowski 2011). The most employed is called Levenberg-Marquardt (LM). All these traditional schemes were implemented using MATLAB toolbox (The Mathworks, Inc 2017). Mini-Batch SVD Based on Deng et al. (2016), this scheme is an alternative version of the former SVD. Now, training data is split into min{Qb, Pt} chunks (or subsets) of equal size Pti = max{floor(Pt / Qb), 1} – floor rounds the argument to the previous integer (whenever it is decimal) or yields the argument itself, being each chunk aimed to derive Qbi = 1 hidden node. SVD Although Deng et al. (2016) proposed this method for a 3-layer network, it was implemented in this work regardless the number of hidden layers. Rand [-lim, lim] This function is based on the proposal in Waszczyszyn (1999), and generates random numbers with uniform distribution in [-lim, lim], being lim layer-dependent and defined by 1/ , < = 0.5 , = a Q b Q b L lim b L    , (24) (24) Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL where a and b refer to the initial and final layers integrating the matrix being initialized, and L is the total number of layers in the network. In the case of a bias or RBF width vector, lim is always taken as 0.5. Extreme Learning Machine (ELM, mb ELM, I-ELM, CI-ELM) Besides these traditional learning schemes, iterative and time-consuming by nature, four versions of a recent, powerful and non-iterative learning algorithm, called Extreme Learning Machine (ELM), were implemented (unlike initially proposed by the authors of ELM, connections across layers were allowed in this work), namely: (batch) ELM (Huang et al. 2006a), Mini-Batch ELM (mb ELM) (Liang et al. 2006), Incremental ELM (I-ELM) (Huang et al. 2006b), Convex Incremental ELM (CI-ELM) (Huang and Chen 2007). Back-Propagation (BP, BPA), Levenberg-Marquardt (LM) Two types of BP schemes were implemented, one with constant learning rate (BP) –‘traingd’ in MATLAB, and another with iteration-dependent rate, named BP with adaptive learning rate (BPA) – ‘traingda’ in MATLAB. The learning parameters set different than their default values are: Learning Rate = 0.01 / cs0.5, being cs the chunk size, as defined in 3.3.15. (ii) Minimum performance gradient = 0. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Concerning the LM scheme – ‘trainlm’ in MATLAB, the only learning parameter set different than its default value was the abovementioned (ii). None implemented. None implemented. 3.3.15 Training Mode (feature 15) Depending on the relative amount of training patterns, with respect to the whole training dataset, that is presented to the network in each iteration of the learning process, several types of training modes can be used, namely (i) batch or (ii) mini- batch. Whereas in the batch mode all training patterns are presented (called an epoch) to the network in each iteration, in the mini-batch counterpart the training dataset is split into several data chunks (or subsets) and in each iteration a single and new chunk is presented to the network, until (eventually) all chunks have been presented. Learning involving iterative schemes (e.g., BP- or LM-based) might require many epochs until an ‘optimum’ design is found. The particular case of having a mini-batch mode where all chunks are composed by a single (distinct) training pattern (number of data chunks = Pt , chunk size = 1), is called online or sequential mode. Wilson and Martinez (2003) suggested that if one wants to use mini-batch training with the same stability as online training, a rough estimate of the suitable learning rate to be used in learning algorithms such as the BP, is ηonline /√𝑐𝑠, where cs is the chunk size and ηonline is Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL the online learning rate – their proposal was adopted in this work. Based on the proposal of Liang et al. (2006), the constant chunk size (cs) adopted for all chunks in mini-batch mode reads cs = min{mean(hn) + 50, Pt}, being hn a vector storing the number of hidden nodes in each hidden layer in the beginning of training, and mean(hn) the average of all values in hn. 3.4 Network Performance Assessment Several types of results were computed to assess network outputs, namely (i) maximum error, (ii) % errors greater than 3%, and (iii) performance, which are defined next. All abovementioned errors are relative errors (expressed in %) based on the following definition, concerning a single output variable and data pattern, 100 qp qLp qp qp d y d e − = , (25) (25) where (i) dqp is the qth desired (or target) output when pattern p within iteration i (p=1,…, Pi) is presented to the network, and (ii) yqLp is net’s qth output for the same data pattern. Moreover, denominator in eq. (25) is replaced by 1 whenever |dqp| < 0.05 – dqp in the nominator keeps its real value. This exception to eq. (25) aims to reduce the apparent negative effect of large relative errors associated to target values close to zero. Even so, this trick may still lead to (relatively) large solution errors while groundbreaking results are depicted as regression plots (target vs. predicted outputs). 3.5 Software Validation Several benchmark datasets/functions were used to validate the developed software, involving low- to high-dimensional problems and small to large volumes of data. Validation results are not presented herein but they were made public in Researcher (2018). Moreover, several papers involving the successful application of this software have already been published by Abambres and his co-workers. 3.4.3 Performance In functional approximation problems, network performance is defined as the average relative error, as defined in eq. (25), among all output variables and data patterns being evaluated (e.g., training, all data). 3.4.2 Percentage of Errors > 3% This variable measures the percentage of relative errors, as defined by eq. (25), among all output variables and learning patterns, that are greater than 3%. 3.4.1 Maximum Error This variable measures the maximum relative error, as defined by eq. (25), among all output variables and learning patterns. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 3.6 Parametric Analysis Results Aiming to reduce the computing time by cutting in the number of combos to be run – note that all features combined lead to hundreds of millions of combos, the whole parametric simulation was divided into nine parametric SAs, where in each one feature 7 only takes a single value. This measure aims to make the performance ranking of all combos within each ‘small’ analysis more ‘reliable’, since results used for comparison are based on target and output datasets as used in ANN training and yielded by the designed network, respectively (they are free of any postprocessing that eliminates output normalization effects on relative error values). Whereas (i) the 1st and 2nd SAs aimed to select the best methods from features 1, 2, 5, 8 and 13 (all combined), while adopting a single popular method for each of the remaining features (F3: 6, F4: 2, F6: {1 or 7}, F7: 1, F9: 1, F10: 1, F11: {3, 9 or 11}, F12: 2, F14: 1, F15: 1 – see Tabs. 2-4) – SA 1 involved learning Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL algorithms 1-3 and SA 2 involved the ELM-based counterpart, (ii) the 3rd – 7th SAs combined all possible methods from features 3, 4, 6 and 7, and concerning all other features, adopted the methods integrating the best combination from the aforementioned SAs 1-2, (iii) the 8th SA combined all possible methods from features 11, 12 and 14, and concerning all other features, adopted the methods integrating the best combination (results compared after postprocessing) among the previous five sub-analyzes, and lastly (iv) the 9th SA combined all possible methods from features 9, 10 and 15, and concerning all other features, adopted the methods integrating the best combination from the previous analysis. Summing up the ANN feature combinations for all parametric SAs, a total of 475 combos were run for this work (note that this value is much lower than the total number of ANNs simulated). ANN feature methods used in the best combo from each of the abovementioned nine parametric sub-analyzes, are specified in Tab. 5 (the numbers represent the method number as in Tabs 2-4). Tab. 3.6 Parametric Analysis Results 6 shows the corresponding relevant results for those combos, namely (i) maximum error, (ii) % errors > 3%, (iii) performance (all described in section 3, and evaluated for all learning data), (iv) total number of hidden nodes in the model, and (v) average computing time per example (including data pre- and post-processing). All results shown in Tab. 6 are based on target and output datasets computed in their original format, i.e. free of any transformations due to output normalization and/or dimensional analysis. The microprocessor used in this work has the following features: OS: Win10Home 64bits, RAM: 128 GB, Local Disk Memory: 1 TB, CPU: Intel® Core™ i9 7960X @ 2.80-4.20 GHz. Tab. 5. ANN feature (F) methods used in the best combo from each parametric sub-analysis (SA). SA F1 F2 F3 F4 F5 F6 F7 F8 F9 F10 F11 F12 F13 F14 F15 1 1 2 6 2 2 7 1 1 1 1 3 2 3 1 3 2 1 2 6 2 2 7 1 2 1 1 9 2 4 1 3 3 1 2 6 4 2 3 1 1 1 1 3 2 3 1 3 4 1 2 6 1 2 3 2 1 1 1 3 2 3 1 3 5 1 2 1 2 2 1 3 1 1 1 3 2 3 1 3 6 1 2 6 1 2 7 4 1 1 1 3 2 3 1 3 7 1 2 1 2 2 7 5 1 1 1 3 2 3 1 3 8 1 2 1 2 2 7 5 1 1 1 3 5 3 1 3 9 1 2 1 2 2 7 5 1 3 3 3 5 3 1 3 ANN feature (F) methods used in the best combo from each parametric sub-analysis (SA). Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL 3.7 Proposed ANN-Based Model The proposed model is the one, among the best ones from all parametric SAs, exhibiting the lowest maximum error (SA 9). That model is characterized by the ANN feature methods {1, 2, 1, 2, 2, 7, 5, 1, 3, 3, 3, 5, 3, 1, 3} in Tabs. 2-4. Aiming to allow implementation of this model by any user, all variables/equations required for (i) data preprocessing, (ii) ANN simulation, and (iii) data postprocessing, are presented in 3.7.1- 3.7.3, respectively. Tab. 6. Performance results for the best design from each parametric sub-analysis SA ANN Max Error (%) Performance All Data (%) Errors > 3% (%) Total Hidden Nodes Running Time / Data Point (s) 1 209.4 11.2 64.7 32 9.95E-05 2 4148.6 177.4 94.7 250 1.21E-04 3 248.4 10.5 59.1 32 9.68E-05 4 202.4 11.9 60.0 32 1.02E-04 5 241.7 11.7 59.1 32 1.09E-04 6 219.5 11.4 59.1 32 9.73E-05 7 246.3 12.7 65.8 32 1.05E-04 8 247.0 14.2 66.3 32 1.02E-04 9 16.3 1.1 10.6 33 1.06E-04 Tab. 6. Performance results for the best design from each parametric sub-analysis. The proposed model is a single MLPN with 5 layers and a distribution of nodes/layer of 8-11-11-11-1. Concerning connectivity, the network is fully-connected, and the hidden and output transfer functions are all Hyperbolic Tangent and Identity, respectively. The network was trained using the LM algorithm (1500 epochs). After design, the average network computing time concerning the presentation of a single example (including data pre/postprocessing) is 1.06x10-4 s – Fig. 7 depicts a simplified scheme of some of network key features. Lastly, all relevant performance results concerning the proposed ANN are illustrated in 3.7.4. The obtained ANN solution for every data point can be found in Abambres and Cabello (2020), making it possible to compute the exact (with all decimal figures) approximation errors. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 7. Proposed 8-11-11-11-1 fully-connected MLPN – simplified scheme. 8 11 11 11 1 inputs output MLPN (computing time = 1.06x10-4 s/example) MLPN (computing time = 1.06x10-4 s/example) Fig. 7. Proposed 8-11-11-11-1 fully-connected MLPN – simplified scheme. It is worth recalling that, in this manuscript, whenever a vector is added to a matrix, it means the former is to be added to all columns of the latter (valid in MATLAB). 3.7.1 Input Data Preprocessing For future use of the proposed ANN to simulate new data Y1,sim (8 x Psim matrix) concerning Psim patterns, the same data preprocessing (if any) performed before training must be applied to the input dataset. That preprocessing is defined by the methods used for ANN features 2, 3 and 5 (respectively 2, 1 and 2 – see Tab. 2), which should be applied after all (eventual) qualitative variables in the input dataset are converted to numerical (using feature 1’s method). Next, the necessary preprocessing to be applied to Y1,sim, concerning features 2, 3 and 5, is fully described. Dimensional Analysis and Dimensionality Reduction Since dimensional analysis (d.a.) was not carried out, and the dimensionality reduction (d.r.) tentative hasn´t yielded any result according to the described in 3.3.3 (linear correlation), one has     1, 1, 1, . . . . after after sim sim sim d r d a Y Y Y = = . (26) (26) Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Input Normalization After input normalization, the new input dataset {𝑌1,𝑠𝑖𝑚}𝑛 𝑎𝑓𝑡𝑒𝑟 is defined as function of the previously determined {𝑌1,𝑠𝑖𝑚}𝑑.𝑟 𝑎𝑓𝑡𝑒𝑟, and they have the same size, reading     ( ) 1, 1, . 0 1 5 25 0 1 5 50 0 1 2 10 0 1 0.9 1.5 0 1 0 3.504 0 1 30 200 0 1 30 200 0 1 20 49527 INP IN = (:,1) + .x - (:,3) ./ (:,2) - ( P IN :,1) (:,4) - (:,3 P INP IN I ) P NP INP after after sim sim n d r rab de Y Y rab n den                           = = = , (27) (:,2) - (:,1) (:,4) - (:,3 INP IN I ) P NP INP rab den = = , (27) (27) where one recalls that operator ‘.x’ multiplies component i in vector rab by all components in row i of subsequent term (analogous definition holds for ‘./’). where one recalls that operator ‘.x’ multiplies component i in vector rab by all components in row i of subsequent term (analogous definition holds for ‘./’). 3.7.2 ANN-Based Analytical Model Once determined the preprocessed input dataset {Y1,sim}nafter (8 x Psim matrix), the next step is to present it to the proposed ANN to obtain the predicted output dataset {Y5,sim}nafter (1 x Psim vector), which will be given in the same preprocessed format of the target dataset used in learning. In order to convert the predicted outputs to their ‘original format’ (i.e., without any transformation due to normalization or dimensional analysis – the only transformation visible will be the (eventual) qualitative variables written in their numeric representation), some postprocessing is needed, as described in detail in 3.7.3. Next, the mathematical representation of the proposed ANN is given, so that any user Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL can implement it to determine {Y5,sim}nafter , thus eliminating all rumors that ANNs are ‘black boxes’. can implement it to determine {Y5,sim}nafter , thus eliminating all rumors that ANNs are ‘black boxes’. 3.7.2 ANN-Based Analytical Model   ( )   ( )   ( ) 1 2 3 1 3 1, 1, 1 2 3 2 4 1 4 2 4 2 3 4 3 2 2 2 3 3 4 4 after T n after T T n after sim sim sim T T T Y W b Y W W Y b Y W W Y W Y b Y Y Y    − − − − − − = + = + + = + + + (28)   ( )   ( )   ( )     ( ) 1 2 3 1 3 1, 1, 1, 5, 2 3 2 4 1 4 2 4 2 3 4 3 1 5 2 5 2 3 5 3 4 5 4 1, 2 2 2 3 3 4 4 5 5 after T n after T T n after sim sim sim s T T T n after after T T T T n i n m sim Y W b Y W W Y b Y W W Y W Y b W Y W Y W Y Y W Y Y Y Y b     − − − − − − − − − − = + = + + = + + + = + + + + , (28)   ( ) 1, 4 1 4 2 4 2 3 4 3 4 4 after sim T T T n Y W W Y W Y b Y  − − − = + + + , (28) , (28)     ( ) 5, 1 5 2 5 2 3 5 3 4 5 4 1, 5 5 s after after T T T T n i n m sim W W Y W Y W Y Y Y b  − − − − = + + + + where where 5 2 3 4 5 ( ) ( ) s s s s e e s e e s s       − − − = = = = + = = . (29) 5 5 ( ) e e s s   + = = . 3.7.2 ANN-Based Analytical Model (29) (29) Arrays Wj-s and bs are stored online in Abambres (2020), aiming to avoid an overlong article and ease model’s implementation by any interested reader. 3.7.3 Output Data Postprocessing In order to transform the output dataset obtained by the proposed ANN, {Y5,sim}nafter (1 x Psim vector), to its original format (Y5,sim), i.e. without the effects of dimensional analysis and/or output normalization (possibly) taken in target dataset preprocessing prior training, the postprocessing addressed next must be performed. Non-normalized (just after dimensional analysis) and Original formats Once obtained {Y5,sim}nafter, the following relations hold for its transformation to its non-normalized format {𝑌5,𝑠𝑖𝑚}𝑑.𝑎. 𝑎𝑓𝑡𝑒𝑟, i.e. just after the dimensional analysis stage, and its original format. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL     5, 5, 5, . . = = after sim sim sim d after n a Y Y Y (30) (30) ( since neither output normalization nor dimensional analysis were carried out. 4. Conclusions Any engineering structure must comply with the appropriate strength, stability and serviceability criteria defined by design standards. Since grid-shells are slender structures highly prone to buckling, understanding how they perform in terms of stability is a critical aspect of their design. This paper presents an application of Artificial Intelligence to predict the onset of elastic buckling on steel grid-shells of paraboloid shape when subjected to uniform vertical loading. The proposed Artificial Neural Network (ANN) yields mean and maximum errors of 1.1% and 16.3%, respectively, for all 1098 data points (i.e., FE models). Only in 10.6% of those points the prediction error exceeds 3%. The analytical formulation corresponding to the proposed ANN is thoroughly described. This is a hands-on tool enabling any user to obtain the buckling factor of any grid-shell belonging to the family (and domain) of those described herein. Using an ANN to obtain such set of predictive formulas is a novel approach not relying on any homogenization of the structure, thus avoiding denaturing its discretized condition. 3.7.4 Performance Results Finally, results yielded by the proposed ANN, in terms of performance variables defined in sub-section 3.4, are presented in this section in the form of several graphs: (i) a regression plot (Fig. 8), where network target and output data are plotted, for each data point, as x- and y- coordinates respectively – a measure of linear correlation is given by the Pearson Correlation Coefficient (R), as defined in eq. (1); (ii) a performance plot (Fig. 9), where performance (average error) values are displayed for several learning datasets; and (iii) an error plot (Fig. 10) for functional approximation problems, where values concern all data (iii1) maximum error and (iii2) % of errors greater than 3%. Fig. 8. Regression plot for the proposed ANN. Fig. 8. Regression plot for the proposed ANN. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Fig. 9. Performance plot (mean errors) for the proposed ANN. Fig. 9. Performance plot (mean errors) for the proposed ANN. Fig. 9. Performance plot (mean errors) for the proposed ANN. Fig. 10. Error plot for the proposed ANN. Fig. 10. Error plot for the proposed ANN. Fig. 10. Error plot for the proposed ANN. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Author Contributions Abambres was in charge of section 3 (Artificial Neural Networks), and Cabello of all remaining sections. Both authors equally contributed to the Conclusions section. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL References Abambres M (2020). W and b arrays, URL. Abambres M, Marcy M, Doz G (2018). Potential of Neural Networks for Structural Damage Localization, hal-02074844v2 Abambres M, Cabello A (2020). Dataset + Tabled Results, URL. Anderson D, Hines EL, Arthur SJ, Eiap EL (1997). Application of Artificial Neural Networks to the Prediction of Minor Axis Steel Connections, Computers & Structures, 63(4), 685-692. Aymerich F, Serra M (1998). Prediction of fatigue strength of composite laminates by means of neural networks, Key Eng. Materials, 144(September), 231–240. Abambres M (2020). W and b arrays, URL. Abambres M, Cabello A (2020). Dataset + Tabled Results, URL. Anderson D, Hines EL, Arthur SJ, Eiap EL (1997). Application of Artificial Neural Networks to the Prediction of Minor Axis Steel Connections, Computers & Structures, 63(4), 685-692. Aymerich F, Serra M (1998). Prediction of fatigue strength of composite laminates by means of neural networks, Key Eng. Materials, 144(September), 231–240. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Bai Z, Huang G, Wang D, Wang H, Westover M (2014). Sparse extreme learning machine for classification, IEEE Transactions on Cybernetics, 44(10), 1858–70. Beyer W, Liebscher M, Beer M, Graf W (2006). Neural Network Based Response Surface Methods - A Comparative Study, 5th German LS-DYNA Forum, October 2006, 29-38, Ulm. Bhaskar R, Nigam A (1990). Qualitative physics using dimensional analysis, Artificial Intelligence, 45(1-2), 111–73. Deng W-Y, Bai, Z., Huang, G.-B. and Zheng, Q.-H. (2016). A fast SVD-Hidden-nodes based extreme learning machine for large-scale data Analytics, Neural Networks, 77(May), 14– 28. Dini M, Estrada G, Froli M, Baldassini N. (2013). Form-finding and buckling optimisation of gridshells using genetic algorithms. Proceedings of the International Association for Shell and Spatial Structures (IASS) Symposium. Dulácska E, Kollár L (2000) Buckling analysis of reticulated shells. International Journal of Space Structures. Vol 15, 3-4. Edemskaya E, Agkathidis A. (2016). Rethinking Complexity: Vladimir Shukhov’s Steel Lattice Structures. Journal of the International Association for Shell and Spatial Structures. Vol. 57 EN 1993-1-1 (2005) Eurocode 3: Design of steel structures - Part 1-1: General rules and rules for buildings. European Committee for Standardization. Flood I (2008). Towards the next generation of artificial neural networks for civil engineering, Advanced Engineering Informatics, 22(1), 4-14. Flood I, Kartam N (1994a). Neural Networks in Civil Engineering: I-Principals and Understanding, Journal of Computing in Civil Engineering, 8(2), 131-148. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL References Gholizadeh S, Pirmoz A, Attarnejad R (2011). Assessment of load carrying capacity of castellated steel beams by neural networks, Journal of Constructional Steel Research, 67(5), 770–779. Gioncu V (1994). Buckling of reticulated shells: State-of-the-art, International Journal of Space Structures. Vol 10, 1. Gunaratnam DJ, Gero JS (1994). Effect of representation on the performance of neural networks in structural engineering applications, Computer-Aided Civil and Infrastructure Engineering, 9(2), 97–108. Haykin SS (2009). Neural networks and learning machines, Prentice Hall/Pearson, New York. Hern A (2016). Google says machine learning is the future. So I tried it myself. Available at: www.theguardian.com/technology/2016/jun/28/all (Accessed: 2 November 2016). Hertzmann A, Fleet D (2012). Machine Learning and Data Mining, Lecture Notes CSC 411/D11, Computer Science Department, University of Toronto, Canada. Huang G, Chen L, Siew C (2006b). Universal approximation using incremental constructive feedforward networks with random hidden nodes, IEEE transactions on neural networks, 17(4), 879–92. Huang G-B, Chen L (2007). Convex incremental extreme learning machine, Neurocomputing, 70(16–18), 3056–3062. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Huang G-B, Zhu Q-Y, Siew C-K (2006a). Extreme learning machine: Theory and applications, Neurocomputing, 70(1-3), 489-501. Hwang K J. (2010). Advanced Investigations of Grid Spatial Structures. Considering various connection systems. PhD thesis. ITKE, University of Stuttgart. Kasun LLC, Yang Y, Huang G-B, Zhang Z (2016). Dimension reduction with extreme learning machine, IEEE Transactions on Image Processing, 25(8), 3906–18. Kato S, Yamauchi Y, Ueki T, Okuhira K (2005). Buckling load of elliptic paraboloidal single layer reticulated roofs with simple supports under uniform load. International Journal of Space Structures. Vol 20, 4. Kuijvenhoven M. (2009). A design method for timber grid shells. MSc thesis. Department of Structural Mechanics. Delft University of Technology. Lachtermacher G, Fuller JD (1995). Backpropagation in time-series forecasting, Journal of Forecasting 14(4), 381–393. Lefevre B, Douthe C, Baverel O (2015) Buckling of elastic gridshells. Journal of the International Association of Shell and Spatial Structures. Vol 56, 153-171. Lefik M, Schrefler BA (2003). Artificial neural network as an incremental non-linear constitutive model for a finite element code, Computer Methods in Applied Mechanics and Engineering, 192(28–30), 3265–3283. Liang N, Huang G, Saratchandran P, Sundararajan N (2006). A fast and accurate online Sequential learning algorithm for Feedforward networks, IEEE Transactions on Neural Networks, 17(6), 1411–23. Makin T. (2006). Timber Gridshell structures. Final Project. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL References Oxford University, Department of Engineering Science McCulloch WS, Pitts W (1943). A logical calculus of the ideas immanent in nervous activity, Bulletin of Mathematical Biophysics, 5(4), 115–133. McNeel (2014) Rhinoceros v.5, USA. McNeel (2014) Rhinoceros v.5, USA. Mukherjee A, Deshpande JM, Anmala J (1996), Prediction of buckling load of columns using artificial neural networks, Journal of Structural Engineering, 122(11), 1385–7. Oasys Ltd (2010) General Structural Analysis GSA v.8.5 Manual, London. Olsson J. (2012). Form finding and size optimisation. Implementation of beam elements and size optimization in real time form finding using dynamic relaxation. MSc thesis. Chalmers University of Technology. Department of Applied Mechanics. Peloux (du) L, Baverel O, Caron J-F, Tayeb F. (2013). From shape to shell: a design tool to materialize freeform shapes using gridshell structures. Rethinking Prototyping, Design Modelling Symposium. Pottmann H, Eigensatz M, Vaxman A, Wallner J. (2014) Architectural Geometry. Computers & Graphics. Vol 47. Prieto A, Prieto B, Ortigosa EM, Ros E, Pelayo F, Ortega J, Rojas I (2016). Neural networks: An overview of early research, current frameworks and new challenges, Neurocomputing, 214(November), 242-268. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Pu Y, Mesbahi E (2006). Application of artificial neural networks to evaluation of ultimate strength of steel panels, Engineering Structures, 28(8), 1190–1196. Rafiq M, Bugmann G, Easterbrook D (2001). Neural network design for engineering applications, Computers & Structures, 79(17), 1541–1552. Researcher, The (2018). “Annsoftwarevalidation-report.pdf”, figshare, 10.6084/m9.figshare.6962873. Rutten D (2014) Grasshopper v. 0.9.0076, USA. Rutten D (2014) Grasshopper v. 0.9.0076, USA. Schlaich J, Schober H. (1996). Glass-Covered Grid-shells. Structural Engineering International 2/96 Aesthetics in Structural Engineering. Schlaich M, Burkhardt U, Irisarri L, Goñi J (2009). Palacio de Comunicaciones – a single layer glass grid-shell over the courtyard of the future town hall of Madrid. Proceedings of the International Association for Shell and Spatial Structures (IASS) Symposium. Schober H. (2016). Transparent Shells. Form, Topology, Structure. Ernst & Sohn Schwenker F, Kestler H, Palm G (2001). Three learning phases for radial-basis-function networks, Neural networks, 14(4-5), 439–58. Tayeb F, (2015). Simulation numérique du comportement mécanique non linéaire de gridshells composés de poutres élancées en matériaux composites et de sections quelconques. PhD Thesis. École Nationale des Ponts et Chaussées. thworks, Inc (2017). MATLAB R2017a, User’s Guide, Natick, USA. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL © 2020 by Abambres and Cabello. Open access publication under the terms and conditions of the Creative Commons Attribution 4.0 (CC BY 4.0) license. © 2020 by Abambres and Cabello. Open access publication under the terms and conditions o y p p the Creative Commons Attribution 4.0 (CC BY 4.0) license. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL The Mathworks, Inc (2017). MATLAB R2017a, User’s Guide, Natick, USA. Tohidi S, Sharifi Y (2014). Inelastic lateral-torsional buckling capacity of corroded web opening steel beams using artificial neural networks, The IES Journal Part A: Civil & Structural Eng, 8(1), 24–40. Toussaint M. (2007). A Design Tool for Timber Gridshells. Delft University of Technology Department of Structural and Building Engineering. Waszczyszyn Z (1999). Neural Networks in the Analysis and Design of Structures, CISM Courses and Lectures No. 404, Springer, Wien, New York. Wilamowski BM (2009). Neural Network Architectures and Learning algorithms, IEEE Industrial Electronics Magazine, 3(4), 56-63. Wilamowski BM (2011). How to not get frustrated with neural networks, 2011 IEEE International Conference on Industrial Technology (ICIT), 14-16 March 2011, IEEE (eds), Auburn University, Auburn, AL, USA. Wilamowski BM, Irwin JD (2011). The industrial electronics handbook: Intelligent Systems, CRC Press, Boca Raton. Wilson DR, Martinez TR (2003). The general inefficiency of batch training for gradient descent learning, Neural Networks, 16(10), 1429–1451. Xie T, Yu H, Wilamowski B (2011). Comparison between traditional neural networks and radial basis function networks, 2011 IEEE International Symposium on Industrial Electronics (ISIE), IEEE(eds), 27-30 June 2011, Gdansk University of Technology Gdansk, Poland, 1194–99. Abambres M, Cabello A (2020). Analytical Prediction of Steel Grid-Shell Stability and Dynamic Behaviors Using Neural Networks – Part 1, URL Xu S, Chen L (2008). Novel approach for determining the optimal number of hidden layer neurons for FNN’s and its application in data mining, In: International Conference on Information Technology and Applications (ICITA), Cairns (Australia), 23–26 June 2008, pp 683–686. Xu S, Chen L (2008). Novel approach for determining the optimal number of hidden layer neurons for FNN’s and its application in data mining, In: International Conference on Information Technology and Applications (ICITA), Cairns (Australia), 23–26 June 2008, pp 683–686. © 2020 by Abambres and Cabello. Open access publication under the terms and conditions of the Creative Commons Attribution 4.0 (CC BY 4.0) license.
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https://napier-repository.worktribe.com/file/168160/1/Integrating%20real-time%20fluid%20simulation%20with%20a%20Voxel%20engine.
English
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Integrating Real-Time Fluid Simulation with a Voxel Engine
˜The œcomputer games journal
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3,052
Comput Game J (2016) 5:55–64 DOI 10.1007/s40869-016-0020-5 1 Edinburgh Napier University, Room C48, Merchiston Campus, 10 Colinton Road, Edinburgh EH10 5DT, UK Integrating Real-Time Fluid Simulation with a Voxel Engine Johanne Zadick1 • Benjamin Kenwright1 • Kenny Mitchell1 Received: 22 September 2015 / Accepted: 29 June 2016 / Published online: 29 July 2016  The Author(s) 2016. This article is published with open access at Springerlink.com Abstract We present a method of adding sophisticated physical simulations to voxel-based games such as the hugely popular Minecraft (2012. http://minecraft. gamepedia.com/Liquid), thus providing a dynamic and realistic fluid simulation in a voxel environment. An assessment of existing simulators and voxel engines is investigated, and an efficient real-time method to integrate optimized fluid simu- lations with voxel-based rasterisation on graphics hardware is demonstrated. We compare graphics processing unit (GPU) computer processing for a well-known incompressible fluid advection method with recent results on geometry shader- based voxel rendering. The rendering of visibility-culled voxels from fluid simu- lation results stored intermediately in CPU memory is compared with a novel, entirely GPU-resident algorithm. Keywords Voxels  Fluid  Geometry shader  Real-time  Video games  Volume  Graphical processing unit (GPU) & Kenny Mitchell k.mitchell2@napier.ac.uk 1 Introduction Voxel-based games such as Minecraft (2012) have become increasingly popular. However, the fluid in such games is usually simulated and rendered in simplistic fashion, and is seldom characterised by realistic dynamics. Fluids such as water are programmed in several different ways in voxel engines. The most commonly used method in voxel-based engines is cellular automaton, which consists of prescribed operations on a regular grid of cells. Each cell can adopt a finite number of states, and rules define the behavior of the fluid. The characteristics of these rules provide 12 123 123 56 Comput Game J (2016) 5:55–64 the major differences between such game simulations, but these are often very simple and not based on mathematical models, and consequently, the fluid does not appear to react realistically in many cases. For example, in Minecraft, water can be observed to spread in a single direction without any obstacles (Fig. 1). By contrast, a dynamic fluid simulation fully rendered with voxels can provide an interesting source of engagement in video games and movies. The Lego Movie (Warner Bros.) (Fig. 2) is a good example, with many compelling voxel-based ocean scenes. However, dynamic fluid simulations are expensive, as a large amount of volumetric information must be updated for every frame, ideally in real-time. Furthermore, voxel engines are rather resource-intensive, due to the number of voxels that need to be displayed for an entire scene. Thus, the concepts of dynamic fluid and voxel engine are hard to merge. This challenge is somewhat alleviated by recent results in both GPU-accelerated fluid simulation (Crane et al. 2007 and Harris 2004) and voxel-based rendering, but to our knowledge, no work has been reported on the particular hurdles of integrating these efficiently. We therefore propose an efficient integration of GPU voxel-based rendering (Miller et al. 2014) with a well-known fluid simulation advection, based on the Navier–Stokes differential equations (Stam 2003). 2.1 Voxel-Based Rasterisation There exist several online tutorials regarding the development of voxel engines, and the main challenges that arise when attempting efficient rendering. A major consideration is the platform technology upon which these are built, which is conducive to GPU fluid simulation. For example, an open source OpenGL fluid Fig. 1 Unrealistic behavior of water in Minecraft Fig. 1 Unrealistic behavior of water in Minecraft 123 57 Comput Game J (2016) 5:55–64 Fig. 2 Sample image of a voxel-based ocean in The Lego Movie Warner Bros Fig. 2 Sample image of a voxel-based ocean in The Lego Movie Warner Bros simulation is not compatible with a Direct3D voxel-based rendering engine, and cannot be employed without considerable reworking of the code. Barrett’s (2015) Obbg engine was developed to illustrate the use of a highly efficient voxel render library, and it illustrates large Minecraft-styled voxel landscapes that are implemented with OpenGL. With an OpenGL voxel engine, CUDA, OpenCL, and OpenGL fluid simulations are valid candidates for integration. However, many of the optimizations applied in this framework are applied for large static open world rendering, and have proved unsuitable for our dynamic voxel rendering requirements, in which each voxel may change from frame to frame. The Poxels rendering framework (Miller et al. 2014), implemented in Direct3D, focuses on rendering sparse 3D voxel environments with data amplification using Geometry Shaders on GPU. This approach reduces the CPU-to-GPU bandwidth costs of updating the volumetric grid data, and makes it more suitable for dynamic voxel-based environment rendering (Fig. 3). Miller et al. (2014) further justify the Fig. 3 Examples of the Poxels (Miller et al. 2014) sparse voxel-based rendering engine, which employs GPU data amplification suitable for efficient dynamic voxel environments Fig. 3 Examples of the Poxels (Miller et al. 2014) sparse voxel-based rendering engine, which emplo GPU data amplification suitable for efficient dynamic voxel environments 3 58 Comput Game J (2016) 5:55–64 GPU rasterisation approach (also used in Minecraft 2012), as opposed to ray-casting oriented approaches. 2.2 Real-Time Fluid Simulation 4 Vlietinck’s simulation (Vlietinck 2009) 123 Comput Game J (2016) 5:55–64 59 2.2 Real-Time Fluid Simulation The Liquid Voxels project (Cabello 2015) developed using Unity 3D allows more realistic fluid behaviors in a voxel-based engine. It uses C# CPU-resident 3D arrays to store fluid information, and a cellular automaton method to define the behavior. However, in our method, since we are working on GPU, we apply 3D textures to store the fluid data. Stam’s (2003) description of fast fluid simulation for games covers the simulation principles and details highly efficient GPU computation methods with which to apply them in 2D. Karoly’s (2012) work details an open source real time fluid implementation and control method which is derived from Stam’s work and which performs well in OpenGL; however, this was incompatible with our choice of the Direct3D voxel rendering method. Vlietinck (2009) uses a similar system, which has been expanded to support 3-dimensional fluid simulations. This work is demonstrated with a fire and smoke simulation (Fig. 4), but equally, we can show the method being applied to water. Since Vlietinck made use of DirectCompute for GPU compute advection, pressure acceleration and correction processing, this very much suits compatibility with our choice of a Direct3D voxel rendering engine. In order to provide a brief background and the context of our Navier–Stokes processing framework, we define a number of processing stages: • the advection of the velocity field of the fluid; • the acceleration caused by the pressure in the fluid; • the diffusion of the momentum resulting from the resistance of the fluid; and, • external forces of static or dynamic bodies interacting with the fluid. • the advection of the velocity field of the fluid; • the advection of the velocity field of the fluid; y • the acceleration caused by the pressure in the fluid; • the acceleration caused by the pressure in the fluid; • the diffusion of the momentum resulting from the resistance of the fluid; and, • external forces of static or dynamic bodies interacting with the fluid. To apply the Navier–Stokes equations, it is necessary to perform three computations to update the velocity at each time step: advection, diffusion, and force application. We can then compute the pressure and subtract the pressure gradient. We want our simulation to realize those calculations on the GPU. Fig. 4 Vlietinck’s simulation (Vlietinck 2009) 123 Fig. 4 Vlietinck’s simulation (Vlietinck 2009) Fig. 4 Vlietinck’s simulation (Vlietinck 2009) Fig. 3 Method and Implementation In the GPU compute fluid simulation process, several textures are associated with the compute shaders that can be either be the input or the output. Textures are defined for the speed, pressure and divergence. In detail, there are three velocity textures and two pressure textures, which deal with the temporary values that must be stored during each stage of the process. Those textures are composed of single precision float 4 types. The final result of the five GPU compute stages is output in a 3D speed grid texture filled with single precision floats. This texture provides the 3D source fluid field for transfer into the voxel-based rendering engine. In the Poxels voxel engine (Miller et al. 2014), it is on the CPU that we must define which voxels of the grid are active (to be displayed). Therefore, to retrieve the result in the initial approach, we read the speed grid texture back on the CPU. Since a texture passed to the polygonal voxel-generating Geometry Shader cannot be read directly from the CPU, we create a staging texture in which we transmit the data from the resulting speed grid texture into the GPU memory. This is performed by mapping the staging texture in CPU memory, and copying the result from our 3D float array. It is important that the size used for the fluid simulation is the same as the size of the 3D voxel staging texture, and that the CPU memory buffer has an appropriate memory address alignment. Once the values in the float array are on the CPU, we can process them in the voxel engine. We include a color argument to the voxel that highlights the spread of the fluid concentration through the simulation. For the purpose of a locally contained fluid simulation within the limits of in-core GPU memory constraints, we define the concept of a volumetric in the class, ‘Chunk’. In this CPU approach, we implement a method in the Chunk class, which links between the speed map array that we have retrieved from the fluid simulation, and the input voxel array to be displayed. This approach activates a voxel if the corresponding value in the dense 3D array is not zero. To deal with the Fig. 5 Flow of memory data between the GPU and the CPU Fig. 5 Flow of memory data between the GPU and the CPU Fig. 3 Method and Implementation 5 Flow of memory data between the GPU and the CPU 12 123 60 Comput Game J (2016) 5:55–64 concentration, we produce a color ramp by applying a function that takes a float between 0 and 1 and returns a RGB color that is then passed to the geometry shader of the Poxel simulation. In a game environment, either textures or an adapted colours range would give a more realistic result. The Poxel-rendering approach (Miller et al. 2014) follows 2 main steps: (1) dispatch to geometry shader stream amplification with stream-out to the cached vertex buffer; followed by (2) regular triangle geometry rasterisation with the generated vertex buffer. g g y g The flow of memory data between the GPU and the CPU for each frame is illustrated in Fig. 5. 4.1 System Specifications To generate the results shown in this paper, we ran the simulation on an Asus N751JX-T4180H. It has a GeForce GTX 950M video card with 2.0 GB of dedicated video RAM. The CPU is an Intel(R) Core(TM) i7-4720HQ with 2.6 GHz Dual-Core 64-bit. The OS is Microsoft Windows 10 Famille, 64-bit, with 8 GB of RAM. Table 2 Major steps— execution times on 64 9 64 9 64 chunk 4.2 Performances In our CPU approach, the time used to copy the data back to the CPU is more significant than the time needed for the all other steps, and so this issue had to be addressed (Fig. 6; Tables 1, 2). For the previous screenshots (Fig. 7) we inject fluid every 400 frames at the top left corner of the chunk and then apply a downward force. A full loop, from the Fig. 6 Graph of frame time (ms) of combined voxel fluid simulation and rendering showing linear scaling and the number of voxels Fig. 6 Graph of frame time (ms) of combined voxel fluid simulation and rendering showing linear scaling and the number of voxels Fig. 6 Graph of frame time (ms) of combined voxel fluid simulation and rendering showing line scaling and the number of voxels 123 Comput Game J (2016) 5:55–64 Comput Game J (2016) 5:55–64 61 Table 1 FPS and frame time on NVIDIA GeForce GTX950M with different simulation chunk sizes Table 2 Major steps— execution times on 64 9 64 9 64 chunk Step Execution time (ns) Advect 5986 Backward advect and pre correct 1710 Second order correction 34,637 Draw source 855 Calculate speed divergence 1282 Jaccobi 14,539 Project 855 Copy in staging texture 2993 Copy from staging texture to CPU 23,088,969 Activate voxels and render 976,276 Fig. 7 Results of simulation running on 64 9 64 9 64 chunk every 20 frames Fig. 7 Results of simulation running on 64 9 64 9 64 chunk every 20 frames appearance of the source to the disappearance of the last voxel last 180 frames. This duration will change based on the chunk size, the source position and the force applied. appearance of the source to the disappearance of the last voxel last 180 frames. This duration will change based on the chunk size, the source position and the force applied. 12 3 Comput Game J (2016) 5:55–64 62 Fig. 8 Flow of memory data between the fluid simulation and the Poxel engine Fig. 8 Flow of memory data between the fluid simulation and the Poxel engine Fig. 9 Graph of FPS with GPU-only method (red) and original method (blue) Fig. 9 Graph of FPS with GPU-only method (red) and original method (blue) 4.3 GPU Optimization In order to improve performance, we needed to avoid copying back the data to the CPU. To prevent this from happening, is was necessary to move some of the Poxel voxel engine CPU’s functionality to the geometry shader. As a result, the voxels are no longer activated by the CPU, since it is in the geometry shader that we use to determine which voxels should be rendered. Instead, in the fluid simulation compute shader, we add another texture (wherein only values that do not equal zero are placed), and we send that texture to the geometry shader. We then continuously output vertex data from the geometry-shader stage using stream-out, which guarantees the deterministic ordering of rendered primitives. The color ramp is then applied directly in the geometry shader (Fig. 8). 123 63 Comput Game J (2016) 5:55–64 Fig. 10 Graph of frame time with GPU-only method (green) and original method (red) Fig. 10 Graph of frame time with GPU-only method (green) and original method (red) Fig. 10 Graph of frame time with GPU-only method (green) and original method (red) Table 3 FPS and frame time on NVIDIA GeForce GT540M with different simulation chunk sizes (GPU approach) Chunk size Blocks FPS Frame time (ms) 32 9 32 9 32 32,768 652 1.534 64 9 64 9 64 262,144 180 5.556 96 9 96 9 96 884,736 58 17.241 128 9 128 9 128 2,097,152 25 40.000 Using that optimization, we have observed a huge improvement in performance, going from 30 fps for a 64 9 64 9 64 chunk, up to 1100 fps (Figs. 8, 9, 10; Table 3). 5 Conclusion This method can be used to generate realistic fluid behaviors in voxel engines. It could be used for water, other fluids, fire, and smoke. This would result in more dynamic voxel works. However, several further optimizations would have to be made to improve performance and efficiency. The fluid simulation that we have described in this paper does is not programmed to detect or respond to obstacles. An extension of this work would be to add obstacles. In that way, the currently active voxels of the chunk would define the position of the obstacles. An interesting point would also be to deal with the way in which different fluids would interact with each other, e.g. water and lava. Likewise, the reaction between fluid-based voxels and a different kind of voxel would need to be tested further. For example, fire or lava can ignite wood. Moreover, the simulation is only based on a single chunk, and it needs to be extended to several chunks. A solution would be to associate each chunk with a fluid texture, and to add the source, based on the position and concentration of fluid at the borders of the other chunks. 12 123 64 Comput Game J (2016) 5:55–64 Acknowledgments The authors would like to thank the reviewers, David Sinclair for his help, and Babis Koniaris for his coding expertise and the valuable assistance he has given us on the GPU-part of the project. This work was supported by the Erasmus programme. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, dis- tribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. References Barett, S. (2015). Obbg—Open block building game. https://github.com/nothings/obbg Cabello, R. (2015). Liquid voxels. http://forum.unity3d.com/threads/liquid-voxels.242821 Barett, S. (2015). Obbg—Open block building game. https://github.com/nothings/obbg Cabello R (2015) Liquid voxels http://forum unity3d com/threads/liquid voxels 24282 g p g g p g g g abello, R. (2015). Liquid voxels. http://forum.unity3d.com/threads/liquid-voxels.242821/ Crane, K., Llamas, I., & Tariq, S. (2007). Real-time simulation and rendering of 3D fluids. In H. Nguy (Ed.), Gpu Gems (chap. 30) (Vol. 3, pp. 633–676). Addison-Wesley. Harris, M. J. (2004) Fast fluid dynamics simulation on the GPU. In R. Fernando (Ed.), GPU Gems: Programming techniques, tips and tricks for real-time graphics (chap. 38) (Vol. 1, pp. 637–665). Addison-Wesley. Karoly, Z. (2012). Real time fluid simulation and control using the Navier–Stokes equations. A thesis submitted in partial fulfilment of the Requirements of Budapest University of Technology and Economics for the M.Sc. in Computer Engineering. Miller, M., Cumming, A., Chalmers, K., Kenwright, B. & Mitchell, K. (2014). Poxels: Polygonal voxel environment rendering. In: Proceedings of the 20th ACM symposium on virtual reality software and technology. Edinburgh, Scotland, 2014. Minecraft Wiki. (2012). Liquid. Available from http://minecraft.gamepedia.com/Liquid Minecraft Wiki. (2012). Liquid. Available from http://minecraft.gamepedia.com/Liquid Stam, J. (2003). Real-time fluid dynamics for games. In: The game developer conference. San Jose CA, 2002. ( ) q p g p q Stam, J. (2003). Real-time fluid dynamics for games. In: The game developer conference. San Jose CA 2002. Vlietinck, J. (2009). Fluid simulation (DX11/DirectCompute). http://users.skynet.be/fquake/ 123 123
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https://link.springer.com/content/pdf/10.1007/s11869-019-00767-9.pdf
English
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Monthly variation in masses, metals and endotoxin content as well as pro-inflammatory response of airborne particles collected by TEOM monitors
Air quality, atmosphere & health
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Abstract Particle exposure has been linked to an increased incidence of cardiovascular disease. Furthermore, particle exposure has been shown to have a chronic inhibitory effect on lung development in young people and may result in increased respiratory problems in adults or children with respiratory-related diseases. In today’s urban environments, particle levels are mainly monitored gravimetrically; however, other factors such as particle size, shape and surface reactivity have recently been noted as highly important in relation to possible health outcomes. Here, particles from TEOM monitor filters placed in three different cities were studied. The purpose of the study was to investigate whether there are variations in particle masses, cadmium and lead contents, as well as endotoxin levels between locations and time points over the year and if this can be correlated to the particles ability to induce a pro-inflammatory response in vitro. Results showed that it is possible to detect variations at different locations and at different time points over the year and that cadmium, lead and endotoxin levels did not coincide with the increased total particle masses while endotoxin levels coincided with pro-inflammatory responses in vitro. The present study shows that filter analysis is a useful complement to gravimetric or particle-counting measurements in studies of particle-related health effects and will give useful information regarding future air quality measurements. Keywords Particles . PM10 . Exposure . TEOM . Metals . Endotoxins . Pro-inflammatory response Keywords Particles . PM10 . Exposure . TEOM . Metals . Endotoxins . Pro-inflammatory response * Stefan A. Ljunggren stefan.ljunggren@liu.se https://doi.org/10.1007/s11869-019-00767-9 Air Quality, Atmosphere & Health (2019) 12:1441–1448 https://doi.org/10.1007/s11869-019-00767-9 Air Quality, Atmosphere & Health (2019) 12:1441–1448 Monthly variation in masses, metals and endotoxin content as well as pro-inflammatory response of airborne particles collected by TEOM monitors Stefan A. Ljunggren1 & Ali Reza Nosratabadi1 & Pål Graff2 & Helen Karlsson1 Received: 27 June 2019 /Accepted: 4 November 2019 # The Author(s) 2019 /Published online: 16 November 2019 2 National Institute of Occupational Health, Oslo, Norway 1 Occupational and Environmental Medicine Center, and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden Stefan A. Ljunggren and Ali Reza Nosratabadi contributed equally to this work. Introduction arsenic, lead, nickel and cadmium. In connection with the introduction of environmental quality standards, particles have been recognised as an increasing air pollution problem (IVL Swedish Environmental Research Institute 2016). Particle exposure, in addition to the increased incidence of cardiovascular disease, has been shown to have a chronic inhibitory effect on lung development in young people be- tween 10 and 18 years of age and may result in increased respiratory problems in children with respiratory-related dis- eases (Gauderman et al. 2004; O’Connor et al. 2008). A number of studies have shown that exposure to air pollution increases the risk of mortality in lung as well as cardiovascular diseases (Pope et al. 2018; Stockfelt et al. 2017; Fiordelisi et al. 2017). The term air pollution, however, includes a vari- ety of substances. In Sweden’s air quality regulation (SFS 2010:477), air pollution includes the presence and air content of nitrogen dioxide, sulphur dioxide, particles (PM10 and PM 2.5), benzene, carbon monoxide, ozone, polyaromatic hydro- carbons (with benzo (a) pyrene as indicator) and the metals In today’s urban environments, particle levels are mainly monitored gravimetrically, which means that the particle con- tents are based on mass. However, other factors such as parti- cle size, shape and surface reactivity have recently been noted as highly important in relation to possible health outcomes (Golokhvast et al. 2015; Steenhof et al. 2011; Ristovski et al. 2012). These factors are likely to be of interest since small particles may end up deeper in the lungs and have a larger combined surface area compared with large particles. Variation in particle properties have also been shown to be of importance for the degree of toxicity and inflammation- inducing potential which has been demonstrated for wear Stefan A. Ljunggren and Ali Reza Nosratabadi contributed equally to this work. * Stefan A. Ljunggren stefan.ljunggren@liu.se 1 Occupational and Environmental Medicine Center, and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden 2 National Institute of Occupational Health, Oslo, Norway Stefan A. Ljunggren and Ali Reza Nosratabadi contributed equally to this work. Air Qual Atmos Health (2019) 12:1441–1448 1442 particles from tires and road surfaces (Araujo 2010; Lindbom et al. 2006, 2007; Karlsson et al. 2011; Gustafsson et al. 2008; Boogaard et al. 2012). particles from tires and road surfaces (Araujo 2010; Lindbom et al. 2006, 2007; Karlsson et al. 2011; Gustafsson et al. 2008; Boogaard et al. 2012). Introduction are used worldwide, measure the ambient concentration of particles (PM10 or PM2.5) in real time. TEOM monitors are gravimetric instruments that draws ambient air through a filter at a constant flow rate (3 L/min), while continuously weighing the filter, measuring ambient particulate mass concentrations (Patashnick and Rupprecht 1991). Replacement of the TEOM filters was carried out according to instructions every month for 1 year (September 2014–August 2015) by personnel from the respective municipality. A total of 48 filters were collected from the four TEOM stations. After each replacement, the TEOM filters were sent to the Occupational and Environmental Medicine laboratory at the Linköping University Hospital. Upon arrival at the laboratory, each sam- ple was recorded and the tube with filters was then placed in a low temperature freeze (−70 °C) while awaiting weighing, particle extraction and analysis. This study is based on a previous study, where the possi- bility of using filters from existing TEOM stations for further characterisation of particle properties was explored (Nosratabadi et al. 2019). The earlier study showed that the particle masses peaked in March/April while the oxidative capacity of the particles was at its highest early in the spring and the content of endotoxins and the pro-inflammatory re- sponse were highest in late summer. This indicates that the source and composition of the particles are different over the year and may pose different health risks (Nosratabadi et al. 2019). In the present study, a more in-depth analysis of TEOM filters collected monthly in three cities in the southeast part of Sweden are presented. The main purpose of the study was to investigate whether there are variations in particle masses, metal contents (Cd, Pb) and endotoxins between locations and time points over the year and if this can be correlated to the particles ability to induce pro-inflammatory response in vitro. To determine the mass of the particles, each filter was weighed with a precision microbalance with a reading preci- sion of 10 μg (Sartorius Micro MC5 P). Before the weighing, each filter was stored for 48 h in a room with a controlled temperature and humidity (24 °C and 55% ± 2%). At the same time, two unexposed control filters were also weighed. The weighing was performed twice, before and after the extraction to calculate the mass of particles released during the extraction. Metal analysis For determination of relative amounts of lead and cadmium in the samples, an atomic absorption spectrophotometry (ContrAA 700 with graphite furnace, Analytik Jena AG, Jena, Germany) was used. The frozen samples were thawed at room temperature and transferred to a Teflon tube. The Teflon tubes were placed in a heating cabinet (50 °C) for 15 h until dried, then 300 μL of nitric acid and 100 μL of water were added to each tube. The Teflon tubes were then incubated in a heating cabinet (80 °C) overnight for 16 h. After incubation, 600 μL of deionised water was added to each tube and mixed for 5 s using a vortex before the analysis. Mean monthly values for the ambient particle concentra- tions were calculated based on data from the TEOM monitors that had been sent to a national database handled by the Swedish Meteorological and Hydrological Institute (SMHI). Information regarding temperatures in the three cities was collected from open data provided by SMHI. Particulate matter (PM10) in air After the first weighing, each filter was placed in a sterile 50-mL Falcon tube and 2 mL of endotoxin-free water was added (Braun Malsungen AG, Germany). To extract the par- ticles from the filter, an ultrasonic probe was used for 5 × 10 s per filter (MSE Soniprep 150 Ultrasonic Disintegrator, Heathfield, UK). The suspension with extracted particle was allocated in fractions of 500 μL and frozen at −30 °C pending analysis. Particulate matter with a size less than 10 μm (PM10) were collected on filters by TEOM monitors. Filters were collected at four sites located in three different cities in the southern part of Sweden during 1 year (September 2014–August 2015). In detail, particles have been collected from two different TEOM stations placed in two different streets (street 1 “Kungsgatan” and street 2 “Promenaden”) in a city connected to the Baltic Sea via a bay, (city 1, Norrköping, 96,500 inhabitants), from one TEOM station placed in an inland city, (city 2, Linköping, 100,000 inhabitants) and from one TEOM station placed in a smaller city located in direct connection to the Baltic Sea (city 3, Kalmar, 36,500 inhabitants). From street 2 in city 1, a sim- ilar filter collection has previously been done for one year (September 2009–August 2010). Results At location 2 in city 1, data was available from 5 years prior to the current study, which allowed a comparison of time trends at this location. Particle concentrations were in general lower 2014–2015 compared with 2009–2010, and the highest peaks occurred in April 2010 and in March 2015 (Fig. 3a). The delay in 2010 may be explained by that the temperature was in general higher during 2014–2015 (Fig. 3b). When looking at the metal content of the collected particles, cadmium showed a significant and lead a close-to-significant decrease years 2014–2015 compared with 2009–2010 (Fig. 3c, d). Interestingly, the highest peaks of the metals occurred in November to February in 2009–2010, a period when the total particle masses collected by the TEOM station were relatively low. Co-variation over the year The co-variation of the investigated variables over the year was investigated using a multivariate model with OPLS-DA. This model aims at separating a set of y-variables (in this case, the different months) using a set of x-variables (in this case, the measures of particle mass, temperature, metal levels, endotoxin content and IL-1β) that allows for detecting under- lying co-variation. This co-variation can be seen as a cluster- ing of investigated y- and x-variables in a two-dimensional plane in a so-called loading plot of the investigated factors. As can be seen in Fig. 2, the endotoxin content and pro- inflammatory response (IL-1β) showed the highest levels dur- ing the summer months (May to August), illustrated as a clus- tering to the right in the image. The PM10 particle concentra- tions were highest in March, while both the lead and cadmium concentrations on the TEOM filters were higher during the winter months (especially November, seen as clustering to the bottom left). Statistics Differences between the cities were investigated using Friedman test with Dunns multiple comparison post-test. Differences between the two measured periods at the same location were analysed by Wilcoxon matched pairs test. A p value below 0.05 was considered significant. To investigate the different measures variability over the year, a multivariate model (OPLS-DA) was created using SIMCA 15. Endotoxins The TEOM monitors and the collection of particles from the TEOM filter are described in detail in a previous study (Nosratabadi et al. 2019). In short, TEOM monitors, which The endotoxin content on each filter was analysed using a specific Limulus assay (Pierce™LAL Chromogenic endotox- in quantitation kit, Thermo Fisher Scientific, Waltham, MA, 1443 Air Qual Atmos Health (2019) 12:1441–1448 city 3 (p < 0.001, Fig. 1b). These differences were however very small in absolute numbers as can be seen in Fig. 1b. USA) according to the manufacturer’s instructions. Briefly, 10 μg of particles in suspension and standard was added to wells of a 96-well plate and incubated for 5 min at 37 °C. To this was added 50 μL of limulus amebocyte lysate (LAL) and the plate was incubated for 10 min before a chromogenic substrate was added followed by 6 min incubation at 37 °C. The endotoxin levels were determined using a spectrophotom- eter measuring at 405 nm (FLUOstar, BMG Labtech, Ortenburg, Germany). y g Extracted particles from the TEOM filters were analysed for their relative metal content. Cadmium levels were significantly higher in city 3 compared with city 1 location 1 (p < 0.001) as well as city 2 (p < 0.01, Fig. 1c). For lead, city 1 location 2 showed significantly higher levels compared with both city 1 location 1 (p < 0.05) and city 2 (p < 0.01, Fig. 1d). Lead levels in city 3 showed a clear increase compared with city 2 and city 1 location 1 but this was not statistical significant. Pro-inflammatory response Endotoxin tests and pro-inflammatory responses via IL-1β analysis showed a similar trend comparing all locations over the year but no significant differences between the cities was found (Fig. 1e, f). However, a positive correlation could be seen be- tween the levels of endotoxin and IL-1β when comparing all measures (Spearman correlation, R = 0.5, p < 0.001). The potential for the collected particles to induce a pro- inflammatory response was measured by incubating plas- ma from a healthy donor with particles and then measur- ing the formed content of IL-1β with a commercial ELISA kit (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. Briefly, 100 μL of whole blood was mixed with 20 μg of extracted particles and incubated for 18 h at 37 °C. The following day, the sam- ple was centrifuged at 14,000g for 5 min. Residual super- natants (blood plasma) were analysed with ELISA kits in which antibodies bound in a 96-well plate bind to IL-1β and, via an enzymatic method, dye is read at 450 nm (FLUOstar, BMG, Germany). Discussion measuring locations in city 1 (Norrköping) showed the highest monthly averages that approached 40 μg/m3, while the monthly average in city 2 (Linköping) reached just over 30 μg/m3 followed by city 3 (Kalmar) with about 25 μg/m3. High levels of airborne particles in the spring have for a long time been considered a problem in Nordic countries (Nosratabadi et al. 2019). However, the timing of when the highest levels occur during the spring may vary slightly from year to year depending on the weather as can be seen in Fig. 3a, b. The Comparison of the three cities d Concentration of lead in the collected dust from the TEOM stations. e Endotoxin levels in the collected dust from the TEOM stations. f Pro-inflammatory response measured by the amount of IL-1β produced after incubation of human plasma over night with collected particles. *p < 0.05 city 1 location 1 vs location 2, ##p < 0.01 city 1 location 1 vs city 2, ¤/¤¤¤p < 0.05/0.001 city 1 location 1 vs city 3, ††p < 0.01 city 1 location 2 vs city 2, ‡/‡‡/‡‡‡p < 0.05/0.01/0.001 city 2 vs city 3 as determined by Friedman’s test with Dunn’s multiple comparison post-test Comparison of the three cities Particle levels (PM10) in air were calculated gravimetrically using TEOM stations and are reported as monthly mean values in Fig. 1a. These values were calculated from data sent from the TEOM monitors and collected in a national database at the Swedish Meteorological and Hydrological Institute (SMHI). There were significantly higher particle levels in city 1 location 1 and city 2 compared with city 3 in pair-wise monthly comparisons (p < 0.05). The average monthly temperature differed between the cit- ies where city 2,which is located inland, showed significantly lower temperature than both locations in city 1 (p < 0,01) and Discussion Particles in air Particulate matter (PM10) masses in air were calculated dur- ing the period September 2014–August 2015, based on infor- mation from TEOM stations located in three different cities in measuring locations in city 1 (Norrköping) showed the high monthly averages that approached 40 μg/m3, while monthly average in city 2 (Linköping) reached just over μg/m3 followed by city 3 (Kalmar) with about 25 μg/m3. H levels of airborne particles in the spring have for a long ti been considered a problem in Nordic countries (Nosratab et al. 2019). However, the timing of when the highest lev Fig. 1 Comparison of monthly values at four different sites in three different cities. a PM10 particle concentrations (μg/m3) in air as reported by the TEOM stations. b Average temperatures. c Concentration of cadmium in the collected dust from the TEOM stations. d Concentration of lead in the collected dust from the TEOM stations. e Endotoxin levels in the collected dust from the TEOM stations. f Pro-inflammatory response measured by the amount of IL-1β produ after incubation of human plasma over night with collected particles. * 0.05 city 1 location 1 vs location 2, ##p < 0.01 city 1 location 1 vs cit ¤/¤¤¤p < 0.05/0.001 city 1 location 1 vs city 3, ††p < 0.01 city 1 locatio vs city 2, ‡/‡‡/‡‡‡p < 0.05/0.01/0.001 city 2 vs city 3 as determined Friedman’s test with Dunn’s multiple comparison post-test Air Qual Atmos Health (2019) 12:1441–1 1444 Air Qual Atmos Health (2019) 12:1441–1448 1444 Fig. 1 Comparison of monthly values at four different sites in three different cities. a PM10 particle concentrations (μg/m3) in air as reported by the TEOM stations. b Average temperatures. c Concentration of cadmium in the collected dust from the TEOM stations. Particles in air Particulate matter (PM10) masses in air were calculated dur- ing the period September 2014–August 2015, based on infor- mation from TEOM stations located in three different cities in Sweden (Fig. 1a). The highest monthly averages for PM10 in the four locations coincided in March 2015. The two 1445 Air Qual Atmos Health (2019) 12:1441–1448 Fig. 2 Loading plot of the multivariate modelling of the investigated variables (black triangles) at the four TEOM stations and their variability during the year (months in grey triangles). Variables and months clustering indicate an underlying pattern of increased level of the variable during that month. The x-axis of the plot is the so-called predictive component that explains most of the variability between months while the y-axis is the orthogonal component indicating further variability. the variable during that month. The x-axis of the plot is the so-called predictive component that explains most of the variability between months while the y-axis is the orthogonal component indicating further variability. Fig. 2 Loading plot of the multivariate modelling of the investigated variables (black triangles) at the four TEOM stations and their variability during the year (months in grey triangles). Variables and months clustering indicate an underlying pattern of increased level of arrives and the road becomes dry, generated particles are free to become airborne and thereby inhaled (Gustafsson et al. 2008). PM10 in air is a rough measure of possible particle- high particle levels in the spring are to a high extent resulting from wear particles that are formed during friction between studded tires and roadway during the winter. When spring Fig. 3 Comparison of PM10 particle concentrations, temperature, cadmium and lead content years 2009–2010 and 2014–2015 in city 1 at ocation 2. a Monthly mean values of particle concentration (μg/m3) in air as reported by the TEOM stations. b Average temperature as collected from open data hosted by the Swedish Meteorological and Hydrological Institute (SMHI). c Concentration of cadmium in the collected dust from the TEOM stations. d Concentration of lead in the collected dust from the TEOM stations. *p < 0.05 Fig. 3 Comparison of PM10 particle concentrations, temperature, cadmium and lead content years 2009–2010 and 2014–2015 in city 1 at location 2. a Monthly mean values of particle concentration (μg/m3) in air as reported by the TEOM stations. b Average temperature as collected from open data hosted by the Swedish Meteorological and Hydrological Institute (SMHI). Particles in air c Concentration of cadmium in the collected dust from the TEOM stations. d Concentration of lead in the collected dust from the TEOM stations. *p < 0.05 Air Qual Atmos Health (2019) 12:1441–1448 1446 related health effects since recent research has shown that smaller combustion particles may be more relevant to study (Xing et al. 2016) and that it is also of great importance what element the particles consist of and what they carry on their surface (Ali et al. 2018). The reason why monthly averages are used in the present study is that these values can be related to the monthly filter changes and thus the particle masses. Unfortunately, monthly average values cannot be directly re- lated to the environmental quality standard (EQS), but they can reflect measures taken by authorities responsible for air quality in the street environments. None of the cities partici- pating in this study exceeded EQS during the study period 2014–2015 but Fig. 3 a reflects the lowering of airborne par- ticles in city 1 location 2, comparing the two periods 2009– 2010 with 2014–2015. This lowering is probably due to per- formed action plans to reduce particles after previous overruns of EQS in city 1 in years 2005 and 2009. 2009–2010. Metal measurements in moss in this area during the period 1985–2015 support our findings regarding lead and cadmium, showing a decreasing trend (IVL Swedish Environmental Research Institute 2016). Endotoxins Endotoxins are bacterial components often found in our im- mediate environment and when we are exposed, the immune system reacts strongly to be prepared for a possible infection (Levels et al. 2011). The internalisation of endotoxins in mac- rophages and endothelial cells results in local production of inflammatory cytokines with subsequent migration of inflam- matory cells into the lung and the penetration of cytokines into the blood (Rylander 2002). Endotoxin exposure is a well-known health risk for, among other things, personnel handling organic waste or cutting fluids as well as agricultural workers. Chronic inhalation ex- posure has been linked to health effects including cough, shortness of breath, fever, headache and inflammation in var- ious occupational settings (Liebers et al. 2008). Endotoxins can adhere to the surface of particles and accompany them into the lungs and the endotoxins may result in more pro- nounced immunological reactions than the particles them- selves. It is thus of interest to know if there are endotoxins extracted with the particles from the TEOM filters and if the levels vary with time points or locations. Metal content of collected particles Filters from all locations showed a similar trend in cadmium and lead levels over the year (Fig. 1c, d). Interestingly, elevat- ed cadmium level did not coincide with monthly mean values for PM10 levels in air and was surprisingly higher in the smaller city 3 than in the larger city 1 and city 2. The origin of this cadmium has to be further studied but according to the Swedish Environmental Health Report 2017 (administered by the Public Health Agency of Sweden), participants in this particular region report that they are disturbed by smoke from private wood burning. Furthermore, the city also has metal- lurgical industry as well as shipping activities that may con- tribute to cadmium levels. Lead on the other hand showed a significant increase in city 1 location 2 compared with city 1 location 1 as well as to city 2. The differences found within city 1 may depend on that location 2 has more traffic (58% more as analysed by the municipality) and that it is located closer to a larger industrial area as well as shipping activities. The latter is interesting in the light of the fact that city 3 that had a clear but non-significant increase of lead compared with city 1 location 1 and city 2 also has shipping activities that may contribute to the detected levels on the TEOM filters. The highest peaks of endotoxins at the different locations were obtained late spring/summer, similar to what has been described before (Carty et al. 2003). During the summer, the particle levels are relatively low, indicating the importance of analysing also what the particles carry on their surface. These results confirm the previous study (Nosratabadi et al. 2019) and are realistic since at this time of the year, when it is warm and humid, conditions are particularly beneficial for bacterial growth (Fig. 1e). Limitations Interestingly, cadmium, lead and endotoxin levels did not co- incide with the total particle masses while endotoxin levels coincided with inflammatory responses in vitro. Each TEOM monitor contains one filter that for this study was collected monthly for subsequent analysis. Thereby, only one filter per month has been available from each location. Exact instructions on how the filter change should be performed were distributed, but it cannot be ruled out that filters may have been contaminated in connection with handling. Acknowledgements Thanks to the Research Council of Southeast Sweden, Region Östergötland, Linköping municipality, Norrköping mu- nicipality, Kalmar municipality (especially Marie Jönsson for the help with the installation and maintenance of the rented TEOM instrument), E.ON (Kalmar) and Östergötland Air Quality Management Association, which through practical initiatives and financial support contributed to the study. No morphological characterisation was performed on the collected particles; thus, nothing can be concluded regarding location or seasonal variations in particle size or shape. The mass-based measurement methods did not allow analysis of nanoparticles and therefore, nothing can be said about their presence. In addition, the methods were not suitable for analysing hydrophobic substances such as polycyclic aromat- ic hydrocarbons (PAH), which would have been highly relevant. Funding Information Open access funding provided by Linköping University. Compliance with ethical standards Conflict of interest The authors declare that they have no conflict of interest. The method used for digestion in this paper will not result in a total digestion of the silicates which might be present in the ambient air. The metal content might therefore be underestimated. However, for the metals presented in the pres- ent paper, previous studies have shown that a milder digestion is sufficient (Tursic et al. 2008). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http:// creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appro- priate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Pro-inflammatory response As a marker for pro-inflammatory response, the cytokine interleukin-1β (IL-1β) was analysed in the present study. To mimic an in vitro fever reaction, the abundance of IL-1β was measured in blood samples exposed to particle solutions from the different sites and time points. An increase in pro- inflammatory response could be seen during summer and ear- ly autumn in all cities, which largely coincided with the time points when the endotoxin levels were elevated in the collect- ed particles (Fig. 1f). However, in city 1 location 2, the levels of cadmium years 2014–2015 were significantly reduced compared with years 2009–2010 (Fig. 3c, p < 0.05). Lead showed a similar trend although not significant (Fig. 3d). Lead and cadmium are in- cluded in the Swedish air quality regulation (SFS 2010: 477). The regulation states, in order to protect human health, the annual mean levels of cadmium should not exceed 5 ng/m3. In addition, lead should not exceed an annual mean value of 0.5 μg/m3. These units are not directly comparable with the units in the present study, but it can be clearly seen in Fig. 3 that both lead and cadmium content per particle dust mass have decreased comparing years 2014–2015 with years These results indicate that it is important to know what the particles may carry on their surface and that it might be of interest to evaluate endotoxin occurrence in connection with particle content analysis in the future. Air Qual Atmos Health (2019) 12:1441–1448 1447 References Measuring PM10 levels, which already show a decreasing trend in Sweden, is probably not an optimal tool for the future when assessing possible health outcomes. There are also indi- cations on that the development in the automobile industry produces an increased amount of small combustion particles (Liu et al. 2013). Furthermore, there are reports showing in- creased addition of nanoparticles (e.g. Ce nanoparticles) in certain propellants (Erdakos et al. 2014) that may contribute to an increased risk of high nanoparticle levels in street spaces in the future. Studies of the smaller airborne particles that can move deeper into the lungs and that are able to carry a larger amount of substances on their surface probably give a better picture of possible health risks. In the future, increased mea- surements of PM2.5 should be considered or the use of particle-counting instruments equipped with a filter for parti- cle surface component analyses. Ali MU, Liu G, Yousaf B, Ullah H, Abbas Q, Munir MAM (2018) A systematic review on global pollution status of particulate matter- associated potential toxic elements and health perspectives in urban environment. Environ Geochem Health:1–32. https://doi.org/10. 1007/s10653-018-0203-z Araujo J (2010) Particulate air pollution, systemic oxidative stress, in- flammation, and atherosclerosis Air Qual Atmos. Health 4:79–93. https://doi.org/10.1007/s11869-010-0101-8 Boogaard H, Janssen NA, Fischer PH, Kos GP, Weijers EP, Cassee FR, van der Zee SC, de Hartog JJ, Brunekreef B, Hoek G (2012) Contrasts in oxidative potential and other particulate matter charac- teristics collected near major streets and background locations. Environ Health Perspect 120:185–191. https://doi.org/10.1289/ ehp.1103667 Carty CL, Gehring U, Cyrys J, Bischof W, Heinrich J (2003) Seasonal variability of endotoxin in ambient fine particulate matter. J Environ Monit 5:953–958. https://doi.org/10.1039/B308488D Erdakos GB, Bhave PV, Pouliot GA, Simon H, Mathur R (2014) Predicting the effects of nanoscale cerium additives in diesel fuel on regional-scale air quality. Environ Sci Technol 48:12775–12782. https://doi.org/10.1021/es504050g Conclusion Fiordelisi A, Piscitelli P, Trimarco B, Coscioni E, Iaccarino G, Sorriento D (2017) The mechanisms of air pollution and particulate matter in cardiovascular diseases. Heart Fail Rev 22:337–347. https://doi.org/ 10.1007/s10741-017-9606-7 The present study of PM10 particles collected on filters, as complement to particle mass calculation, confirms that im- proved knowledge regarding possible health effects from par- ticle exposure is needed. By analysing filters from TEOM stations, we show that it is possible to detect variations at different locations and at different time points over the year. Gauderman WJ, Avol E, Gilliland F, Vora H, Thomas D, Berhane K, McConnell R, Kuenzli N, Lurmann F, Rappaport E, Margolis H, Bates D, Peters J (2004) The effect of air pollution on lung devel- opment from 10 to 18 years of age. N Engl J Med 351:1057–1067. https://doi.org/10.1056/NEJMoa040610 Air Qual Atmos Health (2019) 12:1441–1448 1448 effects. Air Qual Atmos Health 12:161–171. https://doi.org/10. 1007/s11869-018-0638-5 Golokhvast KS, Chernyshev VV, Chaika VV, Ugay SM, Zelinskaya EV, Tsatsakis AM, Karakitsios SP, Sarigiannis DA (2015) Size- segregated emissions and metal content of vehicle-emitted particles as a function of mileage: implications to population exposure. Environ Res 142:479–485. https://doi.org/10.1016/j.envres.2015. 07.018 O’Connor GT, Neas L, Vaughn B, Kattan M, Mitchell H, Crain EF, Evans R 3rd, Gruchalla R, Morgan W, Stout J, Adams GK, Lippmann M (2008) Acute respiratory health effects of air pollution on children with asthma in US inner cities. J Allergy Clin Immunol 121:1133– 1139. https://doi.org/10.1016/j.jaci.2008.02.020 Gustafsson M, Blomqvist G, Gudmundsson A, Dahl A, Swietlicki E, Bohgard M, Lindbom J, Ljungman A (2008) Properties and toxico- logical effects of particles from the interaction between tyres, road pavement and winter traction material. Sci Total Environ 393:226– 240. https://doi.org/10.1016/j.scitotenv.2007.12.030 1139. https://doi.org/10.1016/j.jaci.2008.02.020 Patashnick H, Rupprecht EG (1991) Continuous PM-10 measurements using the tapered element oscillating microbalance. J Air Waste Manage Assoc 41:1079–1083. https://doi.org/10.1080/10473289. 1991.10466903 240. https://doi.org/10.1016/j.scitotenv.2007.12.030 IVL Swedish Environmental Research Institute (2016) (in Swedish) Urbanmätnätet– 30 års mätningar av luftkvalitet (translation: The Urban network – 30 years of air quality measurements). https:// www.ivl.se/download/18.4a88670a1596305e782220a/ 1488285806997/C230.pdf. Accessed 20th February 2019 Pope CA, Ezzati M, Cannon JB, Allen RT, Jerrett M, Burnett RT (2018) Mortality risk and PM2.5 air pollution in the USA: an analysis of a national prospective cohort. Air Qual Atmos Health 11:245–252. https://doi.org/10.1007/s11869-017-0535-3 Ristovski ZD, Miljevic B, Surawski NC, Morawska L, Fong KM, Goh F, Yang IA (2012) Respiratory health effects of diesel particulate mat- ter. Respirology 17:201–212. https://doi.org/10.1111/j.1440-1843. Publisher’s note Springer Nature remains neutral with regard to jurisdic- tional claims in published maps and institutional affiliations. Conclusion 2011.02109.x Karlsson H, Lindbom J, Ghafouri B, Lindahl M, Tagesson C, Gustafsson M, Ljungman A (2011) Wear particles from studded tires and granite pavement induce pro-inflammatory alterations in human monocyte- derived macrophages: a proteomic study. Chem Res Toxicol 24:45– 53. https://doi.org/10.1021/tx100281f Rylander R (2002) Endotoxin in the environment–exposure and effects. J Endotoxin Res 8:241–252. https://doi.org/10.1177/ 09680519020080040101 Levels JH, Geurts P, Karlsson H, Marée R, Ljunggren S, Fornander L, Wehenkel L, Lindahl M, Stroes ES, Kuivenhoven JA, Meijers JC (2011) High-density lipoprotein proteome dynamics in human endotoxemia. Proteome Sci 9:34. https://doi.org/10.1186/1477- 5956-9-34 Steenhof M, Gosens I, Strak M, Godri KJ, Hoek G, Cassee FR, Mudway IS, Kelly FJ, Harrison RM, Lebret E, Brunekreef B, Janssen NA, Pieters RH (2011) In vitro toxicity of particulate matter (PM) col- lected at different sites in the Netherlands is associated with PM composition, size fraction and oxidative potential–the RAPTES pro- ject. Part Fibre Toxicol 8:26. https://doi.org/10.1186/1743-8977-8- 26 Liebers V, Raulf-Heimsoth M, Brüning T (2008) Health effects due to endotoxin inhalation (review). Arch Toxicol 82:203–210. https:// doi.org/10.1007/s00204-008-0290-1 Lindbom J, Gustafsson M, Blomqvist G, Dahl A, Gudmundsson A, Swietlicki E, Ljungman AG (2006) Exposure to wear particles gen- erated from studded tires and pavement induces inflammatory cyto- kine release from human macrophages. Chem Res Toxicol 19:521– 530. https://doi.org/10.1021/tx0503101 Stockfelt L, Andersson EM, Molnár P, Gidhagen L, Segersson D, Rosengren A, Barregard L, Sallsten G (2017) Long-term effects of total and source-specific particulate air pollution on incident cardio- vascular disease in Gothenburg, Sweden. Environ Res 158:61–71. https://doi.org/10.1016/j.envres.2017.05.036 Lindbom J, Gustafsson M, Blomqvist G, Dahl A, Gudmundsson A, Swietlicki E, Ljungman AG (2007) Wear particles generated from studded tires and pavement induces inflammatory reactions in mouse macrophage cells. Chem Res Toxicol 20:937–946. https:// doi.org/10.1021/tx700018z Tursic J, Radic H, Kovacevic M, Veber M (2008) Determination of se- lected trace elements in airborne aerosol particles using different sample preparation. Arh Hig Rada Toksikol 59:111–116. https:// doi.org/10.2478/10004-1254-59-2008-1872 Xing YF, Xu YH, Shi MH, Lian YX (2016) The impact of PM2.5 on the human respiratory system. J Thorac Dis 8:E69–E74. https://doi.org/ 10.3978/j.issn.2072-1439.2016.01.19 Liu H, Rönkkö T, Keskinen J (2013) Impact of vehicle development and fuel quality on exhaust nanoparticle emissions of traffic. Environ Sci Technol 47:8091–8092. Publisher’s note Springer Nature remains neutral with regard to jurisdic- tional claims in published maps and institutional affiliations. Conclusion https://doi.org/10.1021/es401805r Nosratabadi AR, Graff P, Karlsson H, Ljungman AG, Leandersson P (2019) Use of TEOM monitors for continuous long-term sampling of ambient particles for analysis of constituents and biological Publisher’s note Springer Nature remains neutral with regard to jurisdic- tional claims in published maps and institutional affiliations.
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Participatory Sustainability Assessment for Sugarcane Expansion in Goiás, Brazil
Sustainability
2,017
cc-by
9,790
Received: 26 June 2017; Accepted: 28 August 2017; Published: 5 September 2017 Abstract: The sugarcane expansion in Brazil from 1990 to 2015 increased crop area by 135.1%, which represents more than 10 million hectares. Brazilian ethanol production hit a record high in 2015, reaching 30 billion liters, up 6% compared to 2014. In 2009, the Sugarcane Agroecology— ZAE-CANA—was launched to be a guideline to sustainable sugarcane production in Brazil. However, although it aims at sustainable production, it only considered natural aspects of the country, such as soil and climate. It is still necessary to develop instruments for studies on sustainability in all pillars. The aim of this study is to present the results regarding the application of the FoPIA (Framework for Participatory Impact Assessment) methodology in the Southwestern Goiás Planning Region (SGPR). FoPIA is a participatory methodology designed to assess the impacts of land use policies in regional sustainability, and the results showed the capacity of FoPIA to assess the impacts of land use change of the sugarcane expansion in that area. The major advantage of FoPIA is its participatory method feature, as it is possible to join stakeholders to debate and define sustainability guidelines. Keywords: sugar cane expansion; sustainability assessment; FoPIA methodology Participatory Sustainability Assessment for Sugarcane Expansion in Goiás, Brazil Heitor Luís Costa Coutinho 1,†, Ana Paula Dias Turetta 1,*, Joyce Maria Guimarães Monteiro 1, Selma Simões de Castro 2 and José Paulo Pietrafesa 3 Heitor Luís Costa Coutinho 1,†, Ana Paula Dias Turetta 1,*, Joyce Maria Guimarães Monteiro 1 Selma Simões de Castro 2 and José Paulo Pietrafesa 3 1 Embrapa Solos, Rua Jardim Botânico 1024, Rio de Janeiro-RJ 22460-000, Brazil; heitor.coutinho@embrapa.br (H.L.C.C.); joyce.monteiro@embrapa.br(J.M.G.M.) 2 Laboratory of Geomorphology, Pedology and Physical Geography—LABOGEF, IESA, UFG, Campus Samambaia, Goiânia, GO 74.690-900, Brazil; selma@ufg.br 3 Education Faculty of UFG—Program of Pos Graduation in Education (PPGE). Rua 235, s/n-Setor Universitário, Goiânia, GO 74.605-050, Brazil; jppietrafesa@gmail.com * Correspondence: ana.turetta@embrapa.br; Tel.: +55-21-2179-4579 † Deceased. sustainability sustainability sustainability Keywords: sugar cane expansion; sustainability assessment; FoPIA methodology Sustainability 2017, 9, 1573; doi:10.3390/su9091573 www.mdpi.com/journal/sustainability 1. Introduction Bio-ethanol from Brazil is an attractive type of biofuel because of its low price and relatively large greenhouse gas emissions reduction potential [1,2]. Bio-ethanol from Brazil is an attractive type of biofuel because of its low price and relatively large greenhouse gas emissions reduction potential [1,2]. In the late 1970s, Brazil’s National Bioethanol Program (PROALCOOL) ordered the mixture of anhydrous bioethanol (BE) in gasoline (blends up to 25%) and encouraged automakers to produce engines running on pure hydrated ethanol (100%) [3]. The Brazilian adoption of mandatory regulations to determine the amount of BE to be mixed with gasoline was essential to the success of the program [4]. The goal was to reduce oil imports which consumed one half of the total hard currency from exports. Although it was a decision made by the federal government during a military regime, it was well accepted by civil society, the agricultural sector, and car manufacturers [5]. Taking advantage of all the learning and experience of that period, the Brazilian government undertook some responsibilities against the international scenario related to climate change. In Brazil’s Nationally Determined Contribution (NDC), submitted during COP21 in December 2015 and ratified in September 2016, the country agreed to reduce greenhouse gas (GHG) emissions by 37% by 2025 and 43% by 2030, with the 2005 emissions as a reference. To do so, the government agreed to increase biofuel (biodiesel and ethanol) participation by 18% in the energy matrix by 2030 [6]. Other commitments Sustainability 2017, 9, 1573; doi:10.3390/su9091573 www.mdpi.com/journal/sustainability 2 of 15 Sustainability 2017, 9, 1573 were related to actions to reduce GHG emissions by some 37% by 2020 [7]. The sugarcane expansion in Brazil increased 135.1% in crop area from 1990 to 2015, which represents more than 10 million hectares [8]. In 2009, with Decree 6961 [9], the Sugarcane Agroecology Zoning—ZAE-CANA [10] was created to guide the sustainable sugarcane expansion in Brazil. ZAE-CANA’s main goals are to provide technical subsidies to policy makers to direct sugarcane expansion into legally recommended areas and sustainable production in Brazil. 1. Introduction To achieve these goals, the study followed the guidelines that will allow the expansion of production: indication of areas with agricultural potential for sugarcane harvesting without environmental restrictions; exclusion of areas with original vegetation and indication of areas currently under anthropic use; exclusion of areas for cultivation in the Amazon, Pantanal biomes and the Upper Paraguay basin; reduction of direct competition with food production areas; indication of areas with agricultural potential (soil and climate) for the cultivation it means with slopes below 12%, by mechanical harvesting. However, although it aims at sustainable production, the zoning only considered natural aspects of the country, such as soil, climate and relief. Also, the governance continues through contracts, to guarantee the productive supply and effectiveness of the productive chain, thus enhancing uncertainty regarding the sustainability of the Brazilian biodiesel production program [11]. Since the 1990s, environmental studies identified a wide range of reflections on sustainability and agricultural production systems. These reflections converged to the idea that economic growth, environmental preservation and social equity should be considered together to achieve a satisfactory development level [12–15]. Also at that time, the concept of sustainable development (SD), also in the agro-energy sector, was widespread, despite shortcomings in making SD operational. Therefore, policymakers are increasingly demanding comprehensive and reliable analyses of policy impacts on the economic, social and environmental dimensions of SD [16,17]. The use of criteria on sustainability allowed the assessment of the impacts caused by development processes, both in urban and rural areas. This process has contributed to regional assessments such as the implementation of public policies aimed at developing measures to mitigate social and environmental liabilities [18,19]. For instance, the European Union and some of its countries have specific directives to access the sustainability of biofuels such as the Renewable Energy Directive 2009/28/EC [20] and the Fuel Quality Directive 2009/30/EC [21], which established sustainability criteria to meet EU targets and to be eligible for financial support. The development of instruments for studies on sustainability criteria and indicators, as well as those on the impacts on land use, is quite recent and shows gaps that are still under analysis. However, they are important instruments to understand changes that take place in social, environmental or economic phenomena. They can drive a particular need or even resources indicating trends that are undetectable in the processes. China [22–24]. China [22–24]. Considerin Considering the assessment of impacts on the sustainability of sugarcane expansion policies in the southwestern region of Goiás state, Brazil, a participatory consultation was held to promote a structured interdisciplinary discussion about the sugarcane expansion in the region, to select public policy instruments for the construction of sugarcane expansion scenarios, as well as to define land use functions and indicators to be used in FoPIA. Hence, the aim of this study is to present the results regarding the application of this methodology. Considering the assessment of impacts on the sustainability of sugarcane expansion policies in the southwestern region of Goiás state, Brazil, a participatory consultation was held to promote a structured interdisciplinary discussion about the sugarcane expansion in the region, to select public policy instruments for the construction of sugarcane expansion scenarios, as well as to define land use functions and indicators to be used in FoPIA. Hence, the aim of this study is to present the results regarding the application of this methodology. 2.1. Study Area 2.1. Study Area The Southwestern Goiás Planning Region (SGPR) was chosen as the focus area because of its prominent expansion of sugar cane. In 2012, the sugarcane planted area in the SGPR was 286,512 ha and, in 2015, it was nearly twice that area (412,466 ha) [8]. The region spreads across an area of 61,498,463 km2 and 26 municipalities (Figure 1). The Southwestern Goiás Planning Region (SGPR) was chosen as the focus area because of its prominent expansion of sugar cane. In 2012, the sugarcane planted area in the SGPR was 286,512 ha and, in 2015, it was nearly twice that area (412,466 ha) [8]. The region spreads across an area of 61,498,463 km2 and 26 municipalities (Figure 1). Figure 1. The Southwestern Goiás Planning Region and its municipalities. Source: SIEG—GO. Prepared by Trindade [25]. Figure 1. The Southwestern Goiás Planning Region and its municipalities. Source: SIEG—GO. Prepared by Trindade [25]. Figure 1. The Southwestern Goiás Planning Region and its municipalities. Source: SIEG—GO. Prepared by Trindade [25]. Figure 1. The Southwestern Goiás Planning Region and its municipalities. Source: SIEG—GO. Prepared by Trindade [25]. The sugarcane expansion in the large southern Goiás mesoregion is considered recent, as it started in 2004, mainly due to the advance of sugarcane agribusiness. The expansion of agribusiness in Goiás is characterized by high competition for land, favoring the leasing of large plots to harvest sugarcane for the sugar industry. This shows land concentration, mainly in parts of Southwestern Goiás involved in soybean and sugar cane production, and the exclusion of crops like rice, beans and, more recently, corn [26]. The SGPR has regional economic importance in the state as well as consolidated logistics The sugarcane expansion in the large southern Goiás mesoregion is considered recent, as it started in 2004, mainly due to the advance of sugarcane agribusiness. The expansion of agribusiness in Goiás is characterized by high competition for land, favoring the leasing of large plots to harvest sugarcane for the sugar industry. This shows land concentration, mainly in parts of Southwestern Goiás involved in soybean and sugar cane production, and the exclusion of crops like rice, beans and, more recently, corn [26]. The SGPR has regional economic importance in the state, as well as consolidated logistics. However, it needs to be recovered and expanded to support the sugarcane expansion. 1. Introduction Therefore, it is necessary to develop instruments to help land managers to assess the social, economic and environmental impacts caused by land use-related public and corporate policies. These instruments may be quantitative, based on indicators’ response models and functions built according to scientific knowledge and census databases; as well, they may be qualitative instruments based on technical knowledge integrated to that of the local stakeholders. Particularly, the FoPIA (Framework for Participatory Impact Assessment) methodology has been useful to prepare for the participatory assessment of significant changes in land use and in the possibility of sustainability. The FoPIA is designed to enable assessments of policy impacts that are sensitive to national, regional and local sustainability priorities by harnessing the knowledge and expertise of national, regional and local stakeholders who play a central role in the analytical process. The analysis of specific sustainability problems gives rise to realistic national and regional policy and land use change scenarios [17]. The FoPIA was originally developed for application in the European Union to conduct stakeholder-based impact assessments of alternative land use policies, for example, to assess the 3 of 15 3 of 14 Sustainability 2017, 9, 1573 Sustainability 2017, 9, 1573 policy options for biodiversity conservation in Malta [17]. This approach has been adapted for the assessment of land use policies in developing countries, with experiences in Indonesia, Tunisia and China [22–24]. policy options for biodiversity conservation in Malta [17]. This approach has been adapted for the assessment of land use policies in developing countries, with experiences in Indonesia, Tunisia and China [22–24]. Considering the assessment of impacts on the sustainability of sugarcane expansion policies in 2.2. Methodology—FoPIA Background y , , 2 2 M th d l F PIA B k d The FoPIA methodology was developed as part of the EU-SENSOR project (“Sustainability Impact Assessment: Tools for Environmental, Social and Economic Effects of Multifunctional Land Use in European Regions”) and applied to assess the impact of changing land use on different socioenvironmental situations of the European continent [17]. Subsequently, the FoPIA was adapted and used in the participatory impact assessment of different decision-making contexts and of environmental problems associated with land use and management in different Asian and African countries [22–24]. 2.2. Methodology—FoPIA Background The FoPIA methodology was developed as part of the EU-SENSOR project (“Sustainability Impact Assessment: Tools for Environmental, Social and Economic Effects of Multifunctional Land Use in European Regions”) and applied to assess the impact of changing land use on different socioenvironmental situations of the European continent [17]. Subsequently, the FoPIA was adapted and used in the participatory impact assessment of different decision-making contexts and of environmental problems associated with land use and management in different Asian and African countries [22 24] The FoPIA is a participatory methodology designed to assess the impacts of land use policies on regional sustainability. Its conceptual model, in which instrument users and public policy makers indicate policy scenarios to be assessed, considers variables such as driving forces, pressure, states, impacts, and responses (DPSIR). Each scenario generates different economic, fiscal or legislative conditions that, in turn, become driving forces of changes in land use. The pressures are changes in land use and management resulting from the implementation of policies. The pressures act on the states, as well as on the social, economic and environmental features of the regions subjected to changes, and they are represented by indicators. The impacts on sustainability are assessed through changes in the values of indicators as a response to the pressures, and through its relation with the sustainability limits or goals set to the region. Then, the decisions (responses) concerning the mitigation of or the adaptation to the impacts are then taken by the instrument users. However, due to limitations during the project, it was not possible to apply the entire methodology (Figure 2). countries [22–24]. The FoPIA is a participatory methodology designed to assess the impacts of land use policies on regional sustainability. Its conceptual model, in which instrument users and public policy makers indicate policy scenarios to be assessed, considers variables such as driving forces, pressure, states, impacts, and responses (DPSIR). 2.2. Methodology—FoPIA Background y , , 2 2 M th d l F PIA B k d Each scenario generates different economic, fiscal or legislative conditions that, in turn, become driving forces of changes in land use. The pressures are changes in land use and management resulting from the implementation of policies. The pressures act on the states, as well as on the social, economic and environmental features of the regions subjected to changes, and they are represented by indicators. The impacts on sustainability are assessed through changes in the values of indicators as a response to the pressures, and through its relation with the sustainability limits or goals set to the region. Then, the decisions (responses) concerning the mitigation of or the adaptation to the impacts are then taken by the instrument users. However, due to limitations during the project, it was not possible to apply the entire methodology (Figure 2). Figure 2. Framework for Participatory Impact Assessment (FoPIA) methodology steps [17]. Light gray boxes indicated what was not applied in this study. Figure 2. Framework for Participatory Impact Assessment (FoPIA) methodology steps [17]. Light gray boxes indicated what was not applied in this study. Figure 2. Framework for Participatory Impact Assessment (FoPIA) methodology steps [17]. Light gray boxes indicated what was not applied in this study. Figure 2. Framework for Participatory Impact Assessment (FoPIA) methodology steps [17]. Light gray boxes indicated what was not applied in this study. In this study the FoPIA methodology comprises three stages: (1) The development of policy implementation scenarios and the consequent changes in land use, as well as the preliminary assessment of sustainability issues in the case study; (2) The definition of the Land Use Functions [27] suitable to the case study on a regional scale, by structuring the sustainability issue in the social, economic and environmental dimensions similarly balanced; (3) The definition of indicators for each Land Use Function, their responses to each scenario presented, followed by the integrated analysis of the results. 2.2. Methodology—FoPIA Background y , , 2 2 M th d l F PIA B k d In this study the FoPIA methodology comprises three stages: (1) The development of policy implementation scenarios and the consequent changes in land use, as well as the preliminary assessment of sustainability issues in the case study; (2) The definition of the Land Use Functions [27] suitable to the case study on a regional scale, by structuring the sustainability issue in the social, economic and environmental dimensions similarly balanced; (3) The definition of indicators for each Land Use Function, their responses to each scenario presented, followed by the integrated analysis of the results. 2.1. Study Area 2.1. Study Area At first (2004– 2008), much of the sugarcane expansion replaced soybean plantations, which, in turn, have shifted to The SGPR has regional economic importance in the state, as well as consolidated logistics. However, it needs to be recovered and expanded to support the sugarcane expansion. At first 4 of 15 Sustainability 2017, 9, 1573 (2004–2008), much of the sugarcane expansion replaced soybean plantations, which, in turn, have shifted to pasture areas. S i bili f 2.3. The Methodological Construction of FoPIA for Sugarcane Expansion in SGPR In order to apply the FoPIA methodology to assess the impacts of land 2.3. The Methodological Construction of FoPIA for Sugarcane Expansion in SGPR In order to apply the FoPIA methodology to assess the impacts of land use change due to sugarcane expansion in the southwestern region of Goiás, a workshop for the participatory assessment of impacts on the sustainability of sugarcane expansion policies in Southwestern Goiás, was held at the Institute of Social and Environmental Studies (IESA—Instituto de Estudos Sócio- Ambientais) of the Federal University of Goiás (UFG), in Goiania, Goiás - Brazil, on 12 December 2012. The goals of this consultation were to promote a structured interdisciplinary discussion on the sugarcane expansion in SGPR, to select public policy instruments for the construction of sugarcane ti i d t d fi l d f ti d i di t t b d i th F PIA It In order to apply the FoPIA methodology to assess the impacts of land use change due to sugarcane expansion in the southwestern region of Goiás, a workshop for the participatory assessment of impacts on the sustainability of sugarcane expansion policies in Southwestern Goiás, was held at the Institute of Social and Environmental Studies (IESA—Instituto de Estudos Sócio-Ambientais) of the Federal University of Goiás (UFG), in Goiania, Goiás - Brazil, on 12 December 2012. The goals of this consultation were to promote a structured interdisciplinary discussion on the sugarcane expansion 5 of 15 Sustainability 2017, 9, 1573 in SGPR, to select public policy instruments for the construction of sugarcane occupation scenarios, and to define land use functions and indicators to be used in the FoPIA. It condensed phase 1 and two steps of phase 2 of the FoPIA methodology (Figure 2). These steps concern topics to be discussed by experts, who have experience and knowledge in the study subject, to promote the technical base for the furthers steps. The goal was the establishment of the sugarcane expansion drivers and their potential indicators. The further steps—unfortunately, not considered in this paper—would include other stakeholders’ consultation, such as government representatives, farmers and practitioners. p p y, p p other stakeholders’ consultation, such as government representatives, farmers and practitioners. The workshop was a consultation activity to regional experts to subsidize the construction of policy scenarios, as well as the selection of Land Use Functions and impact indicators, by taking into consideration the case study of the expansion of sugarcane in the SGPR. 2.3. The Methodological Construction of FoPIA for Sugarcane Expansion in SGPR In order to apply the FoPIA methodology to assess the impacts of land 2.3. The Methodological Construction of FoPIA for Sugarcane Expansion in SGPR The workshop for the participatory assessment of impacts on the sustainability of sugarcane expansion policies in Southwestern Goiás included 32 experts. The number of participants the research team considered ideal to the required dynamic activities of the FoPIA workshop. The criteria to define the experts was their performance in research projects at the SGPR or their experience in studies on the impacts generated by land use changes of sugarcane expansion in the region, favoring researchers, professors, Master’s and PhD students experts in geography, agronomy, ecology, climatology, soil and rural sociology. The workshop structure was based on guiding lectures, followed by group works and plenary discussions. The workshop was divided into three study sessions: (1) Public policy scenarios; (2) land use functions; and (3) impact indicators. These steps followed the FoPIA methodology [17] (Figure 2). A previous material contend technical information to support discussions during the workshop sessions was prepared and distributed to the participants. Thus, they could work on this material and upgrade it with their knowledge. The following sections describe each session and their outcome are described in the results. 2.3.1. Session I: Public Policy Scenarios Many factors are driving the increase in sugar cane production to meet the increase in ethanol demand in the national and international markets, such as government incentives (laws, decrees, public plans, programs, and policies) and foreign investment and market pressure (demand × supply). Based on past trends and on the experts’ opinions it is possible to draw up reference scenarios. These scenarios represent developments without interference—in the absence of policy changes—they are the counterfactual, the background against which the impact of a policy can be evaluated. These scenarios are needed to know what the situation in the target year would be if policies did not change [28]. In the workshop one of the objectives was to identify the driving forces (key trends) that expand sugarcane in the SGPR, and select which would be considered in the baseline scenario. Also, the main public policies that promote sugarcane expansion sustainability were identified and selected to elaborate public policy scenarios. Thus, six work groups were randomly formed for this session in order to discuss and summarize their findings around four guiding questions. These questions intended to exchange knowledge on sustainability concepts and how this knowledge applies to the case study and to the sugarcane expansion in the SGPR. These questions also aimed to point out the most appropriate public policies to the assessment, namely: 1. What are the main issues related to sugarcane expansion sustainability? 2. What are the main factors driving the sugarcane expansion in SGP 3. What are the main public policies promoting this process? 4. Consensually define which public policy would have greater influence on the sugarcane crop expansion and spatial distribution in the SGPR. Present two options for the implementation of this policy to build scenarios. 6 of 15 Sustainability 2017, 9, 1573 After the discussion, each group wrote down their answers in cards, which were presented at a plenary sitting and posted on a board. The session ended with a debate including all participants. 2.3.2. Session II: Land Use Functions The definition and use of Land Use Functions (LUFs) contribute to the aggregation and prioritization of indicators according to different social, economic and environmental functions performed by land use [29], that is, the LUFs summarize the relationship between the sustainability dimensions and the indicators to be built. The SENSOR project considered nine LUFs, three for each sustainability dimension, namely: (a) the social dimension: Labor supply; human health and recreation; cultural (landscape identity, scenic beauty, cultural heritage); (b) the economic dimension: Industrial activities and construction; rural production and mining; transport; and (c) the environmental dimension: Supply and conservation of abiotic resources; support, provision and conservation of biotic resources; maintenance of ecosystem processes (Table 1). However, the LUFs are flexible and allow changes to better meet the goals of each case study. Therefore, the original LUFs were presented and discussed by the audience. It was reviewed in terms of relevance and suitability considering the investigated object of study—the sugarcane expansion in SGPR. ble 1. Land Use Functions (LUF) defined by the SENSOR Project team based on the LUFs suggested the European Union [26]. Sustainability Dimension LUF SOCIAL Labor supply Quality of life Human health and recreation ECONOMIC Industrial activities and construction Rural production Infrastructure ENVIRONMENTAL Conservation of abiotic resources Conservation of biotic resources Maintenance of ecosystem processes Table 1. Land Use Functions (LUF) defined by the SENSOR Project team based on the LUFs suggested to the European Union [26]. Table 1. Land Use Functions (LUF) defined by the SENSOR Project team based on the LUFs suggested to the European Union [26]. e 1. Land Use Functions (LUF) defined by the SENSOR Project team based on the LUFs suggested e European Union [26]. Sustainability Dimension LUF SOCIAL Labor supply Quality of life Human health and recreation ECONOMIC Industrial activities and construction Rural production Infrastructure ENVIRONMENTAL Conservation of abiotic resources Conservation of biotic resources Maintenance of ecosystem processes The working groups were reorganized into two groups for knowledge and experience representation in each sustainability dimension (social, economic and environmental). A panel was set up and the groups presented their results in plenary by posting cards containing land use functions defined by them, along with their supporting justifications. 3.1. Session I: Public Policy Scenarios To build reference scenarios, it was necessary to draw up guiding questions based on the local reality considering the development of the biofuel industry in the region. The responses given by the work groups were summarized for each question, as follows. • What are the main issues related to the sustainability of sugarcane expansion? There was strong transversality between the responses and comments of the work groups, and this shows the importance of the sustainability issues in their three dimensions (social, economic and environmental). Regarding the social aspect, the factor “concentration of lands controlled by large companies (sugar and alcohol plants) and landowners for cattle breeding and soybean crops, at the expense of small/medium farmers and family farmers” was pointed out by nearly all groups. One group reported that the process started through land leases (for soybean, and later, sugarcane), as the price was attractive, especially for small producers. During the successive sugar plantation renewals, for example, the lease price fell due to the reduction in the sucrose content linked to the lease price. As the situation continued, the plants made a proposal to purchase the lands and thus consolidate the concentration of rural properties in the studied region. There was strong impact on the land ownership structure. It mainly affected small farmers, who lost their identity as rural producers and it significantly changed the local agricultural profile. This reality has given rise to several issues related to the growth of the area cultivated with sugarcane monocultures in the SGPR: The transition from manual to mechanized harvesting systems without burning led to sugarcane cutters losing their jobs. These workers had no training and thus were not employed by the sugar and alcohol industry. These sugarcane cutters, and the small farmers who sold their lands, migrated to cities with insufficient infrastructure to absorb the new population. Another critical factor was the inadequate working conditions for the sugarcane cutters who remained in the non-mechanized plantations. As many of these workers are required to cut a very large amount of sugarcane per day, the physical strain often leads to exhaustion and occupational diseases [32]. There is also labor supply seasonality, a characteristic of the conventional sugarcane production system. As for the economic aspect, the issue of increasing land prices was highlighted, since the sale of small properties caused strong impacts. 2.3.3. Session III: Impact Indicators The experts participating in the workshop used the following criteria to select the sustainability indicators, built according to the recommendations of the Organization for Economic Cooperation and Development [30,31]. • Relevance to the formulation of policies • Simplicity, conciseness, and ease of interpretation • Analytical robustness • Measurability • Operability • Availability (spatial and temporal). • Relevance to the formulation of policies • Simplicity, conciseness, and ease of interpretation • Availability (spatial and temporal). The same work groups formed in the previous session applied the above-mentioned criteria to point out the most appropriate indicators to represent each LUF. Each group was asked to select Sustainability 2017, 9, 1573 7 of 15 three indicators per LUF. The results of each group were presented in plenary and the indicators were grouped—eliminating redundancies—and systematized for further analysis. three indicators per LUF. The results of each group were presented in plenary and the indicators were grouped—eliminating redundancies—and systematized for further analysis. 3. Results and Discussion The activities carried out in the three sessions produced a summary of results obtained from the experts’ work. Subsequently, a set of aspects that should compose the policy scenarios for participatory evaluation was presented by taking into consideration the feasibility of implementing the FoPIA methodology to assess social, environmental and economic impacts on the sugarcane expansion process in the SGPR. 3.1. Session I: Public Policy Scenarios Such impacts also occur in the urban real estate sector, as the demand for housing also increases due to the arrival of new workers trained to work in plants and the rural exodus of farmers who lease or sell their properties. Tax evasion was reported as relevant to the local economy, as most of the income generated from the sugar and sugarcane production does not stay in the municipality. It is transferred to the plants‘ centers of origin installed in the SGPR, which are mostly located in the Brazilian southeastern and northeastern regions. Income concentration, characterized by the low equity in the distribution of the economic benefits generated by sugarcane production, was identified as an important sustainability issue, despite the large tax collection increase in the state and municipalities. It was reported that the local food production has been strongly impacted by sugarcane expansion due to reduced family production or land use change of these families’ lands for sugarcane production. 8 of 15 Sustainability 2017, 9, 1573 The study groups presented some environmental aspects. They highlighted soil compaction, worsened by the standardization of mechanized crop management techniques that replaced the extensive pastures and the annual crops of family farmers previously managed through manual techniques. Mechanical harvesting includes heavy machinery and its successive use in the fields, which leads to soil detachment contributing to its compaction. In addition to soil quality loss, water infiltration and retention capacity is reduced. This leads to increased rainwater runoff, as well as increased runoff of the water used in irrigation systems. The outcome is soil erosion and transportation of nutrients and pesticides to the beds of streams, creeks and rivers [33]. Sustainability 2017, 9, 1573 8 of 14 increased runoff of the water used in irrigation systems. The outcome is soil erosion and t a o tatio of ut ie t a d e ti ide to the bed of t ea eek a d i e [33] The change in sugarcane field drainage dynamics increases the risk of groundwater and aquifers contamination with pesticides and industrial wastes such as vinasse and heavy metals, dumped into the soil through fertirrigation. This is worse in soils presenting sandier texture, and the experts showed concern regarding this topic. 3.1. Session I: Public Policy Scenarios The strong water footprint resulting from high evapotranspiration—typical of the sugarcane culture—is another relevant issue to the overall environmental impacts, since it threatens water availability to humans, fauna and flora [34]. transportation of nutrients and pesticides to the beds of streams, creeks and rivers [33]. The change in sugarcane field drainage dynamics increases the risk of groundwater and aquifers contamination with pesticides and industrial wastes such as vinasse and heavy metals, dumped into the soil through fertirrigation. This is worse in soils presenting sandier texture, and the experts showed concern regarding this topic. The strong water footprint resulting from high evapotranspiration—typical of the sugarcane culture—is another relevant issue to the overall environmental impacts since it threatens water availability to humans fauna and flora [34] In addition to these facts, the experts mentioned that burning-based sugarcane harvest systems are still used in the SGPR, and this leads to severe air quality issues. environmental impacts, since it threatens water availability to humans, fauna and flora [34]. In addition to these facts, the experts mentioned that burning-based sugarcane harvest systems till d i th SGPR d thi l d t i lit i The issue of biodiversity loss, which becomes more evident when livestock areas are converted into sugarcane fields, was also mentioned. Although these areas are already deforested, livestock coexists with small forest fragments and scattered trees, as they provide shade and shelter for farm animals, as well as landing to several bird species, especially in livestock systems with low technological input. These systems are quite evident in large areas that have not been converted into sugarcane crops or grain monocultures. are still used in the SGPR, and this leads to severe air quality issues. The issue of biodiversity loss, which becomes more evident when livestock areas are converted into sugarcane fields, was also mentioned. Although these areas are already deforested, livestock coexists with small forest fragments and scattered trees, as they provide shade and shelter for farm animals, as well as landing to several bird species, especially in livestock systems with low technological input. These systems are quite evident in large areas that have not been converted into sugarcane crops or grain monocultures • What are the main public policies promoting this process? • What are the main public policies promoting this process? Some information on macro and micro state intervention policies were identified to reflect on intervention policies in the sugarcane industry and to simultaneously develop mechanisms to assess the industry impacts. The participants noticed that a set of policies should be highlighted in the SGPR: the Kyoto Protocol (at the global level); the National Agro-Energy Plan and the ZAE Cana (at the federal level); the Goiás Industrial Development Program (“Programa Produzir”) and Grants and Taxes on services (ISS) at the state level. The Kyoto Protocol (KP) is an international agreement linked to the United Nations Framework Convention on Climate Change (UNFCCC), which commits developed countries by setting internationally emission reduction targets. Brazil does not have a mandatory GHG emission reduction target; however, it has participated in the KP through the Clean Development Mechanism (CDM) projects. Clean energy generation projects, biofuels and other renewable sources could generate carbon credits to be traded on the carbon market. In this context, the National Plan for Climate Change (NPCC) aimed, among other things, “to foster the sustainable increase in the share of biofuels in the national transport matrix and work to structure an international market of sustainable biofuels”. One of the goals of the National Agro-Energy Plan [35] was to create conditions to internalize and regionalize the development based on agro-energy expansion and on the value added to the supply chain. The guidelines for this expansion were provided by the Agro-Ecological Sugarcane Zoning—ZAE-CANA [10]. Goiás state programs, such as Programa Produzir [36], which focuses on to the implementation and expansion of industries, also have a strong influence on the sugarcane expansion and reduce the due value-added tax (VAT) installments. Finally, municipal policies were mentioned, including conveniences such as land grants and taxes on services (ISS) to implement new industries in Goiás. In addition, policies that have restricted sugarcane advancement, such as those found in the Rio Verde, one of the municipalities of the SGPR, which limited the sugarcane occupation to 10% of the municipal territory to protect areas planted with soybean, as well as the local food industry supply. • What are the main factors driving the sugarcane expansion in Southwestern Goiás? g p g • What are the main factors driving the sugarcane expansion in Southwestern Goiás? • What are the main factors driving the sugarcane expansion in Southwestern Goiás? • What are the main factors driving the sugarcane expansion in Southwestern Goiás? The agribusiness model in the SGPR and in the state of Goiás is similar to that used in the São Paulo countryside—the largest national sugarcane producer—facilitating crop expansion. The high domestic and international demand for energy sources as alternatives to fossil fuels was considered an important sugarcane expansion factor. This expansion was supported by public policies and international agreements that favored the transformation of ethanol into an agricultural commodity. The other expansion factors mentioned were the technological development of the sugarcane and bioethanol productive chain and land availability. The agribusiness model in the SGPR and in the state of Goiás is similar to that used in the São Paulo countryside—the largest national sugarcane producer—facilitating crop expansion. The high domestic and international demand for energy sources as alternatives to fossil fuels was considered an important sugarcane expansion factor. This expansion was supported by public policies and international agreements that favored the transformation of ethanol into an agricultural commodity. The other expansion factors mentioned were the technological development of the sugarcane and bioethanol productive chain and land availability. Infrastructure and logistics such as agricultural flow paths and the ethanol pipeline installation plan, were considered the main sugarcane expansion factors in the SGPR. In addition, the agroecological suitability (soil, climate, topography) of most of the territory for sugarcane cultivation was considered average. This scenario qualified owners and entrepreneurs to receive government economic incentives for such purpose Manzatto et al. [10] (Figure 3). Infrastructure and logistics such as agricultural flow paths and the ethanol pipeline installation plan, were considered the main sugarcane expansion factors in the SGPR. In addition, the agroecological suitability (soil, climate, topography) of most of the territory for sugarcane cultivation was considered average. This scenario qualified owners and entrepreneurs to receive government economic incentives for such purpose Manzatto et al. [10] (Figure 3). Figure 3. Sugarcane crop expansion drivers in the Southwestern Goiás Planning Region (SGPR). Figure 3. Sugarcane crop expansion drivers in the Southwestern Goiás Planning Region (SGPR). Figure 3. Sugarcane crop expansion drivers in the Southwestern Goiás Planning Region (SGPR). Figure 3. Sugarcane crop expansion drivers in the Southwestern Goiás Planning Region (SGPR). Sustainability 2017, 9, 1573 9 of 15 3.2. Session II: Land Use Functions The work groups presented their views on LUFs initially adopted by Sensor project (Table 1) and suggested some modifications. A plenary consensus was obtained and a set of three LUFs was proposed for each sustainability dimension, as well as the potential indicators to achieve each LUF (Table 2). Regarding the social dimension, the experts showed concern about the quality of the manual labor found in the SGPR agricultural production systems. These activities were often considered inhospitable, especially in the case of crops using sugarcane burning before the harvest. The proposal for the inclusion of the health and quality of life aspects in order to compose LUFs to assess this issue was accepted unanimously. The inclusion of the local socio-cultural development LUF was also suggested as LUFs hold recreational, educational, religious, scientific and cultural land use functions. The SGPR is notable for its natural beauty and its rich, exuberant landscape, mainly due to the heterogeneity of its elements. Regarding the economic dimension, rural production along with the local consumption expansion issue were considered important to comprise another LUF as a way to reflect on the local impacts of the sugarcane expansion, and about the difficulty to produce and consume other food products. The income evasion was pointed out in Session I. If only the agricultural production is assessed, a positive result might hide a local negative impact, such as the reduced consumption of locally produced agricultural products. A similar situation can be found in the Mid-Goiás Planning Region, where sugarcane crops expanded much between 2000 and 2011, increasing from 23,000 to 123,000 hectares, which pushed up either the land value or the food supply in the region [37]. The region hosts one of the largest protected areas in the Cerrado biome, the Parque Nacional das Emas, whose integrity is threatened by the land use in its surroundings. Plateaus, cliffs and gorges, forest fragments, and water sources that drain their waters to three major watersheds (Paraguay, Araguaia and Paraná rivers), as well as cultural and archaeological sites, provide the local population and visitors with the scenic beauty and the cultural wealth of the region. Monocultures devoid of the tree element—which some cattle ranches still have in their pastures—are dominated by heavy machinery and, in some cases, use burning as an agricultural practice. Thus, they represent a high risk to the integrity of rural landscapes in the SGPR. • Policy proposals that could be implemented. • Policy proposals that could be implemented. The last item discussed in the sessions to create scenarios concerned proposals for public policy instruments to be implemented. These instruments would result in the effective transition of the production chains and allow the creation of sustainable logic-related actions. Among public policy instruments, it was suggested that the ZAE-CANA should be further detailed to condition the government incentive contributions under the National Agro-Energy Plan, as this mechanism is considered critical to the process of sustainability. The agroecological zonings of the main crops in Goiás (scale 1:100,000) would enable a specific regulatory benchmark for Goiás and for the SGPR through the definition of sugarcane production priority areas. According to Manzatto et al. [10], many municipalities in the SGPR have large areas with medium/high suitability for sugarcane production, for example, Rio Verde (72%) and Quirinópolis (73%). p p p It was suggested that the environmental planning should be considered when formulating tax incentive policies. Also, the development of an environmental education policy to encourage better understanding of the use and impacts related to soil, water resources and biodiversity was suggested. The ecological VAT could be used to reward municipalities that encourage land management changes. Accordingly, the development of a certification policy with economic incentives to certified systems was suggested. Figure 4 summarizes the main proposals built in public policies discussions. 10 of 15 ms was Sustainability 2017, 9, 1573 the development of t d Fi 4 Figure 4. Strategies and public policy themes suggested for the sustainable development of sugarcane expansion in the SGPR. Figure 4. Strategies and public policy themes suggested for the sustainable development of sugarcane expansion in the SGPR. Figure 4. Strategies and public policy themes suggested for the sustainable development of sugarcane expansion in the SGPR. Figure 4. Strategies and public policy themes suggested for the sustainable development of sugarcane expansion in the SGPR. 3.2. Session II: Land Use Functions As for the environmental dimension, by taking into consideration the importance given to water resources in both productive activities and in the supply for human consumption, as well as the high water demand in the sugarcane culture, the insertion of the conservation of abiotic resources LUF was proposed. It was considered comprehensive and included issues such as water resources and erosion and loss of soil and nutrients. 11 of 15 11 of 15 Sustainability 2017, 9, 1573 Table 2. Indicators to assess sugarcane expansion sustainability in the SGPR. Sustainability LUF Indicators SOCIAL (a) Labor quality and supply Hiring, firing and balance Average income Employment rate by sector Use of local labor Health care and quality of life Access to basic sanitation Hospital facilities and beds/100,000 inhabitants Student attendance per school year Crime rate Local socio-cultural development Number of public leisure facilities GINI index Cultural groups Number of Municipal Councils Number of high school graduates ECONOMIC (b) Industrial activities and construction Urbanization rate Industrial diversification Industrial gross domestic product (GDP) Availability of public transportation Electricity consumption Rural production and local consumption Agricultural GDP Agricultural diversification Area occupied by crops Consumption of local agricultural products Infrastructure Electrical power generation Electric transmission network Road network diversity Electricity cogeneration ENVIRONMENTAL (c) Conservation of abiotic resources Consumption of pesticides and fertilizers Use/ Agroecology Zoning (ZAE) discrepancy Percentage of preserved PPA Total use/sugarcane expansion rate Soil loss Burned area/harvested area Conservation of biotic resources Percentage of preserved permanent preservation area (PPA) Total use/sugarcane expansion rate Burned points/year Deforestation rate—pasture clearing Number of fragments (measures of associated landscape) Pesticide consumption Maintenance of ecosystem processes Percentage of preserved PPA Carbon stock and sequestration Water body sedimentation rate Percentage of contiguous production area (landscape/permeability matrix) Fragmentation level of the remaining forests Table 2. Indicators to assess sugarcane expansion sustainability in the SGPR. 4. Conclusions The sugarcane expansion scenarios in the SGPR indicate the dynamics of the expansion and point out some weaknesses and potentialities of ethanol production in this region. This information can be analyzed in the light of the influence of the driving forces that operate in the local industrial and agro-industrial sectors, which may favor or restrict the cultivation of sugarcane in the region. The study collected information that allows us to conclude that the edaphoclimatic conditions, the availability of areas for cultivation, and governmental policies at the federal and state levels are among the main attraction factors for the implantation, expansion and revitalization of the sugar and alcohol industry in the SGPR. The ZAE-CANA was the main instrument of public policies selected for the construction of sugarcane expansion scenarios in SGPR. Other public policies and drivers should be considered in scenarios for the expansion of sugarcane. However, due to the socio-environmental diversity of the region, the same set of public policy instruments can result in very different social, economic and environmental impacts. The participatory methodological approach provided the basis for evaluating the sustainability impacts caused by the expansion process of sugarcane cultivation and the implementation of ethanol agribusiness in the SGPR. Based on technical knowledge integrated with the stakeholders of the local society, it was possible to indicate the LUF and the indicators that should be considered in the FoPIA in the SGPR sugarcane expansion scenarios. The LUF defined in this study were similar to those originally proposed, demonstrating that the LUF set by the experts address the main sustainability issues of the sugarcane expansion in SGPR. Participants, however, placed a special emphasis on the health care issue of quality of life as a new LUF proposal. They also stressed the local socio-cultural development, which would include recreational, educational, religious, scientific and cultural land use as the region shelters landscapes with remarkable scenic beauty. The prioritization stage of the indicators was not carried out due to the low availability of time during the workshop so that the participating experts could have access to more information and reflect on the issue. However, they showed a clear need to select a minimum set of indicators in a participatory way associated with each LUF to evaluate and monitor the sustainability of scenarios for expansion of sugarcane cultivation geared to the industrial production of sugar and ethanol in SGPR. 3.3. Session III: Impact Indicators The work groups in the Session III were the same as session II and, according to criteria such as relevance, simplicity, robustness, measurability, operability and spatial and temporal availability, they chose the indicators that would be most appropriate to represent each LUF defined in the previous session. Each work group proposed three indicators for each LUF, according to the sustainability dimension they represented (Table 2). Fifty-three indicators were pointed out by the six work groups. The analysis and removal of redundancies and inconsistencies resulted in 43 proposed indicators: 13 social, 13 economic and 17 environmental indicators (Table 2). The experts understood that the indicators must reflect the impacts of land use changes on the municipality or region, based on a broader scale than that observed exclusively in production areas such as plants or rural properties. Regarding the social dimension, most experts agreed to include indicators capable to evaluate the quality of issues such as job opportunities, education, public security and leisure for the people. 12 of 15 Sustainability 2017, 9, 1573 Similarly, not only did the suggested economic indicators measure the industrial and agricultural production values, but they also assessed the diversification of these products. They measured power generation and assessed its distribution. They also measured the availability of public transportation, as well as the capacity of the road network to meet the demand for transport. Thus, the experts selected variables to identify the relationship between social and economic factors in order to expand the potential to improve the local population's quality of life. The environmental issue is reflected in the indicators representing the relevant impacts to sugarcane monocultures, namely the contamination of soils and water resources by pesticides and excessive nutrients (especially nitrogen) [38]; the biodiversity loss due to the sugarcane monoculture and the way it is managed by agricultural companies and landowners [39,40]; the air quality, which is strongly compromised by the smoke from post-harvest burning [41]; and the soil compaction and its subsequent incapacity to retain sediments, nutrients and water [42]. 4. Conclusions Finally, the results indicate the potential of the FoPIA methodology as a tool to assess sustainability in a participatory way, bringing together stakeholders to discuss and promote guidelines to achieve sustainability. However, as the methodology was not fully applied, it was not possible to access stakeholders’ preferences and feedback. FoPIA has proven to be a powerful tool—although it is complex and demands a great amount of energy input. We highly recommend this tool; however, we must stress that studies that use it must require thorough previous planning, especially concerning the workshops and stakeholders mobilization. 13 of 15 13 of 15 Sustainability 2017, 9, 1573 Acknowledgments: We gratefully acknowledge the time and efforts of the experts who joined the workshop. We also thank the Sixth EU’s Framework Programme for the financial support and the anonymous reviewers for their critical and constructive comments. Author Contributions: Heitor Coutinho designed the FoPIA application for the sugarcane expansion in SGPR; Ana Turetta wrote the manuscript and compiled the figures and tables; Joyce Monteiro wrote the manuscript mainly the public policies section and conclusions; Selma Castro and José Pietrafesa contributed with the workshop organization, map elaboration and text suggestions. All authors contributed to the discussion. Conflicts of Interest: The authors declare no conflict of interest. References 1. Buckeridge, M.S.; de Souza, A.P.; Arundale, R.A.; Teixeira, K.J.; De Lucia, E. Ethanol from sugarcane in Brazil: a ‘midway’ strategy for increasing ethanol production while maximizing environmental benefits. GCB Bioenergy 2012, 4, 119–126. [CrossRef] 1. Buckeridge, M.S.; de Souza, A.P.; Arundale, R.A.; Teixeira, K.J.; De Lucia, E. Ethanol from sugarcane in Brazil: a ‘midway’ strategy for increasing ethanol production while maximizing environmental benefits. GCB Bioenergy 2012, 4, 119–126. [CrossRef] 2. Martinelli, L.A.; Filoso, S. Expansion of Sugarcane Ethanol Production in Brazil: Environmental and Social Challenges. Available online: http://onlinelibrary.wiley.com/doi/10.1890/07-1813.1/epdf (accessed on 14 August 2017). 2. Martinelli, L.A.; Filoso, S. Expansion of Sugarcane Ethanol Production in Brazil: Environmental and Social Challenges. Available online: http://onlinelibrary.wiley.com/doi/10.1890/07-1813.1/epdf (accessed on 14 August 2017). g ) 3. Walter, A.; Galdos, M.V.; Scarpare, F.V.; Scarpare, F.V.; Leal, M.R.L.V.; Seabra, J.E.A.; da Cunha, M.P.; Picoli, M.A.; de Oliveira, C.O.F. Brazilian sugarcane ethanol: Developments so far and challenges for the future: Brazilian sugarcane ethanol. Wiley Interdiscip. Rev. Energy Environ. 2014, 3, 70–92. [CrossRef] 4. Marin, R.M. Understanding sugarcane production, biofuels, and market volatility in Brazil—A research perspective Outlook Agric 2016 45 75 77 [CrossRef] g 3. Walter, A.; Galdos, M.V.; Scarpare, F.V.; Scarpare, F.V.; Leal, M.R.L.V.; Seabra, J.E.A.; da Cunha, M.P.; Picoli, M.A.; de Oliveira, C.O.F. Brazilian sugarcane ethanol: Developments so far and challenges for the future: Brazilian sugarcane ethanol. Wiley Interdiscip. Rev. Energy Environ. 2014, 3, 70–92. [CrossRef] 3. Walter, A.; Galdos, M.V.; Scarpare, F.V.; Scarpare, F.V.; Leal, M.R.L.V.; Seabra, J.E.A.; da Cunha, M.P.; Picoli, M.A.; de Oliveira, C.O.F. Brazilian sugarcane ethanol: Developments so far and challenges for the future: Brazilian sugarcane ethanol. Wiley Interdiscip. Rev. Energy Environ. 2014, 3, 70–92. [CrossRef] g y p gy , , [ ] 4. Marin, R.M. Understanding sugarcane production, biofuels, and market volatility in Brazil—A research perspective. Outlook Agric. 2016, 45, 75–77. [CrossRef] 4. Marin, R.M. Understanding sugarcane production, biofuels, and market volatility in Brazil—A research perspective. Outlook Agric. 2016, 45, 75–77. [CrossRef] 5. Goldemberg, J. Ethanol for a sustainable energy future. Science 2007, 315, 808–810. [CrossRef] [PubMed] 6. Brasil. Pretendida Contribuição Nacionalmente Determinada. Available online: http://www.itamaraty.gov. br/images/ed_desenvsust/brasil-indc-portugues.pdf (accessed on 19 June 2017). 6. Brasil. Pretendida Contribuição Nacionalmente Determinada. Available online: http://www.itamaraty.gov. br/images/ed_desenvsust/brasil-indc-portugues.pdf (accessed on 19 June 2017). 7. Brasil. Política Nacional Sobre Mudança do Clima—PNMC e dá Outras Providências. Available online: http://www.planalto.gov.br/ccivil_03/_ato2007-2010/2009/lei/l12187.htm (accessed on 19 June 2017). 7. Brasil. Política Nacional Sobre Mudança do Clima—PNMC e dá Outras Providências. References Available online: http://www.planalto.gov.br/ccivil_03/_ato2007-2010/2009/lei/l12187.htm (accessed on 19 June 2017). 8. IBGE/SIDRA Pesquisa Agrícola Municipal. Available online: http://www.sidra.ibge.gov.br/bda/tabela/ listabl.asp?z=t&o=11&i=P&c=1181 (accessed on 5 November 2016). 9. Brasil. Aprova o Zoneamento Agroecológico da Cana-de-açúcar e Determina ao Conselho Monetário Nacional o Estabelecimento de Normas para as Operações de Financiamento ao setor Sucroalcooleiro, nos termos do Zoneamento. Available online: http://www.planalto.gov.br/ccivil_03/_Ato2007-2010/2009/ Decreto/D6961.htm (accessed on 19 June 2017). 10. Manzatto, C.V.; Assad, E.D.; Mansilla Bacca, J.F.; Zaroni, M.J.; Pereira, S.E.M. Zoneamento Agroecológico da Cana-de-Açúcar—Expandir a Produção, Preservar a Vida, Garantir o Future. Available online: https://ainfo. cnptia.embrapa.br/digital/bitstream/CNPS-2010/14408/1/ZonCana.pdf (accessed on 14 August 2017). 11. Rathmann, R.; Silveira, S.J.C.; Santos, O.I.B. Governança e configuração da cadeia produtiva do biodiesel no Rio Grande do Sul. Rev. Ext. Rural 2008, 15, 69–101. 12. Hardi, P.; Zdan, T.J. Assessing Sustainable Development: Principles in Practice; International Institute for Sustainable Development: Winnipeg, MB, Canada, 1997. 13. Vezzoli, C.; Manzini, E. O Desenvolvimento de Produtos Sustentáveis: Os Requisitos Ambientais dos Produtos Industriais; EDUSP: São Paulo, Brazil, 2002. 14. Lawn, P. Sustainable Development Indicators in Ecological Economics; Edward Elgar: Cheltenham, London, UK, 2006. 15. Sachs, I. Barricadas de ontem, campos de futuro. Estud. Av. 2010, 24, 25–38. [CrossRef] 16. Helming, K.; Diehl, K.; Bach, H.; Dilly, O.; König, B.; Kuhlman, T.; Pérez-Soba, M.; Sieber, S.; Tabbush, S.; Tscherning, K. Ex ante impact assessment of policies affecting land use, Part A: Analytical framework. Ecol. Soc. 2011, 16, 29. [CrossRef] 17. Morris, J.B.; Tassone, V.; de Groot, R.; Camilleri, M.; Moncada, S. A framework for participatory impact assessment: Involving stakeholders in European policy making, a case study of land use change in Malta. Ecol. Soc. 2011, 16, 12. [CrossRef] 18. Van Bellen, H.M. Indicadores de Sustentabilidade: Uma Análise Comparativa. Ph.D. Thesis, Programa de Pós-Graduação em Engenharia de Produção, Universidade Federal de Santa Catarina, Florianópolis, Brazil, 2002. 14 of 15 Sustainability 2017, 9, 1573 14 of 15 19. Veiga, J.E. Indicadores de Sustentabilidade; Estudos Avançados: São Paulo, Brazil, 2010. 20. EU—European Union. Directive 2009/28/EC—Renewable Energy Directive. Available online: http://eur- lex.europa.eu/legal-content/EN/ALL/?uri=CELEX:32009L0028 (accessed on 6 April 2017). 21. EU—European Union. Directive 2009/30/EC Amending Directive 98/70/EC on Fuel. Available http://ec.europa.eu/environment/air/transport/pdf/art7a.pdf (accessed on 6 April 2017). 22. König, H.J.; Schuler, J.; Suarma, U.; Mcneill, D.; Imbernon, J.; Damayanti, F.; Dalimunthe, S.A.; Uthes, S.; Sartohadi, J.; Helming, K. Assessing the impact of land use policy on urban-rural sustainability using the FoPIA approach in Yogyakarta, Indonesia. Sustainability 2010, 2, 1991–2009. [CrossRef] 23. References König, H.; Sghaier, M.; Schuler, J.; Abdeladhim, M.; Helming, K.; Tonneau, J.P.; Ounalli, N.; Imbernon, J.M.; Wiggering, H. Participatory Impact assessment of soil and water conservation scenarios in Oum Zessar Watershed, Tunisia. Environ. Manag. 2012, 50, 153–165. [CrossRef] [PubMed] 24. König, H.J.; Zhen, L.; Helming, K.; Uthes, S.; Yang, L.; Cao, X.; Wiggering, H. Assessing the impact of the sloping land conversion programme on rural sustainability in Guyuan, Western China. Land Degrad. Dev. 2014, 25, 385–396. [CrossRef] 25. Trindade, S.P. Aptidão Agrícola, Mudanças de usos dos Solos, Conflitos e Impactos Diretos e Indiretos da Expansão da Cana-de-Açúcar na Região Sudoeste Goiano. Tese Doutorado Ufg/Programa de Pós-Graduação em Ciências Ambientais. Available online: http://repositorio.bc.ufg.br/tede/handle/tede/5047 (accessed on 29 August 2017). 26. Lima, D.L. Estrutura e Expansão da Agroindústria Canavieira no Sudoeste Goiano: Impactos No Uso Do Solo e na Estrutura Fundiária a Partir de 1990. Ph.D. Thesis, IE/UNICAMP, Campinas, Brazil, 2010. 27. Pérez-Soba, M.; Petit, S.; Jones, L.; Bertrand, N.; Briquel, V.; Omodei-Zorini, L.; Contini, C.; Helming, K.; Farrington, J.H.; Mossello, M.T. Land use functions: a multifunctionality approach to assess the impact of land use changes on land use sustainability. In Sustainability Impact Assessment of Land Use Changes; Helming, K., Pérez-Soba, M., Tabbush, P., Eds.; Springer: Berlin, Germany, 2008; cap. 19; pp. 375–404. 28. Kuhlman, T. Scenarios: Driving forces and policies. In Sustainability Impact Assessment of Land Use Changes; Helming, K., Pérez-Soba, M., Tabbush, P., Eds.; Springer: Berlin, Germany, 2008; cap. 19; pp. 131–157. 29. Paracchini, M.L.; Pacini, C.; Jones, M.L.M.; Pérez-Soba, M. An aggregation framework to link indicators associated with multifunctional land use to the stakeholder evaluation of policy options. Ecol. Indic. 2011, 11, 71–80. [CrossRef] 30. OECD—Organisation for Economic Co-Operation and Development. Core Set of Indicators for Environmental Performance Reviews; OECD: Paris, France, 1993. Available online: http://enrin.grida.no/htmls/armenia/ soe2000/eng/oecdind.pdf (accessed on 23 June 2017). 31. OECD—Organisation for Economic Co-Operation and Development. Environmental Indicators: Development, Measurement and Use; OECD: Paris, France, 2003. Available online: https://www.oecd.org/env/indicators- modelling-outlooks/24993546.pdf (accessed on 23 June 2017). 32. Ficarelli, T.R.d.A.; Ribeiro, H. Queimadas nos canaviais e perspectivas dos cortadores de cana-de-açúcar em macatuba, São Paulo. Saúde Soc. 2010, 19, 48–63. 33. Vieira, J.N.d.S. A Agroenergia e os Novos Desafios para a Política Agrícola no Brasil. In O Futuro da Indústria: Biodiesel; Série Política Industrial, Tecnológica e de Comércio Exterior; Ministério do Desenvolvimento, Indústria e Comércio Exterior-MDIC/Instituto Euvaldo Lodi-IEL/Núcleo Central: Brasília, Brazil, 2006; pp. 37–48. 34. Rosillo-Calle, F.; Cortez, L.A.B. References Towards Proalcool II: A review of the Brazilian Bioethanol Programme. Biomass Bioenergy 1998, 14, 115–124. [CrossRef] 35. Brasília, D.F. Plano Nacional de Agroenergia 2006–2011/Ministério da Agricultura. In Pecuária e Abastecimento, Secretaria de Produção e Agroenergia, 2nd ed.; Embrapa Informação Tecnológica: Brasília, Brazil, 2006. 36. Goiás. Aprova o Regulamento do Programa de Desenvolvimento Industrial de Goiás—PRODUZIR (Decreto No 5.265). Available online: http://www.gabinetecivil.goias.gov.br/decretos/numerados/2000/decreto_ 5265.htm (accessed on 19 June 2017). 37. Pietrafesa, J.P.; Sauer, S.; Santos, A.E.A. Políticas e recursos públicos na expansão dos agrocombustíveis em Goiás: ocupação de novos espaços em áreas de Cerrado. In Transformação do Cerrado: Progresso, Consumo e Natureza; Pietrafesa, J.P., e Silva, S.D., Eds.; Editora da PUC Goiás: Goiânia, Brazil, 2011; pp. 93–121. 15 of 15 15 of 15 Sustainability 2017, 9, 1573 38. Silva, M.A.M.; Martins, R.C. Produção de Etanol e Impactos Sobre os Recursos Hídricos; IBASE/BNDES: Hong Kong, China; Brasília, Brazil, 2008; pp. 50–63. 39. Carvalho, S.P.; Marin, J.O.B. Agricultura familiar e agroindústria canavieira: Impasses sociais. Rev. Econ. Sociol. Rural 2011, 49, 3. [CrossRef] Pasqualetto, A.; Zito, R.K. Impactos Ambientais da Monocultura da Cana-de-Açúcar; UFG: Goiânia, Brazil, 2000 40. Pasqualetto, A.; Zito, R.K. Impactos Ambientais da Monocultura da Cana-de-Açúcar; UFG: Goiânia, Brazil, 2000. 41. Gonçalves, D.B. Sob as cinzas dos canaviais: o perigoso impasse das queimadas no estado de São Paulo. Inf. Econ. 2005, 35, 32–44. Gonçalves, D.B. Sob as cinzas dos canaviais: o perigoso impasse das queimadas no estado de São Paulo Inf. Econ. 2005, 35, 32–44. 42. Severiano, E.C.; Oliveira, G.C.; Dias Júnior, M.S.; Costa, K.A.P.; Castro, M.B.; Magalhães, E.N. Potencial de descompactação de um Argissolo promovido pelo capim-tifton 85. Rev. Bras. Eng. Agríc. Ambient. 2010, 14, 39–45. [CrossRef] © 2017 by the authors. Licensee MDPI, Basel, Switzerland. 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ОРТОПЕДИЧЕСКОЕ ЛЕЧЕНИЕ БОЛЬНЫХ С ПОЛНОЙ АДЕНТИЕЙ НА ФОНЕ САХАРНОГО ДИАБЕТА
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Received: 16th August 2022 Accepted: 20th August 2022 Online: 24th August 2022 KEY WORDS челюстно-лицевой Received: 16th August 2022 Accepted: 20th August 2022 Online: 24th August 2022 Ранним признаком СД может быть сухость во рту, гиперемия слизистых оболочек, жжение, сопровождающееся жаждой, атрофия нитевидных сосочков языка, хейлиты, изменение вкусовой чувствительности, остеопороз в пределах альвеолярного отростка и др. Много исследований посвящено ухудшению гигиенического состояния полости рта у больных СД, состоянию твердых тканей зуба, однако данные противоречивы. области, сахарного диабета, атрофия, ретинопатия, хайропатия, нейропатия, микроальбуминурия, катаракта, липоидный некробиоз. Введение. Сахарный диабет (СД), являясь наиболее распространенной эндокринной патологией, затрагивающей лиц любого шла, возраста и национальности приводит к длительной утрате здоровья и ранней гибели больных. Сахарный диабет сопровождается такими осложнениями, как диабетическая ретинопатия, хайропатия (ограничение подвижности суставов), сенсорная нейропатия, микроальбуминурия, катаракта, липоидный некробиоз (поражение кожи), задержка физического развития и полового созревания. В основе осложнений лежат микро и макроангиопатии, гипергликолизирование коллагена. При СД изменения со стороны челюстно-лицевой области множественны, они зависят от типа, длительности, компенсации сахарного диабета и от его осложнений. Ранним признаком СД может быть сухость во рту, гиперемия слизистых оболочек, жжение, сопровождающееся жаждой, атрофия нитевидных сосочков языка, хейлиты, изменение вкусовой чувствительности, остеопороз в пределах альвеолярного отростка и др. Много исследований посвящено ухудшению гигиенического состояния полости рта у больных СД, состоянию твердых тканей зуба, однако данные противоречивы. Возможно, это обусловлено особенностями и длительностью клинического течения Volume 2 Issue 6, June 2022 ISSN 2181-287X Page 62 Volume 2 Issue 6, June 2022 ISSN 2181-287X Page 62 основного заболевания, продолжительностью приема препаратов, наличию осложнений, наследственными и другими факторами. Цель исследования. Повышение эффективности ортопедического лечения при полной адентии у больных сахарным диабетом. При использовании протезов из сплава титана ВТ-14 общая микробная обсемененность возрастает в небольшой степени. Использование базисной пластмассы "СтомАкрил" сопровождается резким увеличением обсемененности слизистой оболочки полости рта и базиса протеза с преобладанием условно-патогенной микрофлоры. Материалы и методы исследования. Всего под наблюдением находилось 70 пациентов, в возрасте от 32 до 75 лет, среди которых было 40 мужчин и 30 женщин. Результаты исследования. В условиях экспериментально воспроизведенного сахарного диабета значительно меняется динамика морфологических проявлений тканевой реакции и формирования капсулы вокруг введенного под кожу имплантата. Наиболее интенсивное и склонное к хронизации воспаление в ткани происходит при имплантации животным с СД акриловых пластмасс - «Фторакс» и «СтомАкрил». Воспалительная реакция тормозила созревание соединительной ткани капсулы, формирующейся вокруг образцов из полимеров. Результаты исследования. В условиях экспериментально воспроизведенного сахарного диабета значительно меняется динамика морфологических проявлений тканевой реакции и формирования капсулы вокруг введенного под кожу имплантата. Наиболее интенсивное и склонное к хронизации воспаление в ткани происходит при имплантации животным с СД акриловых пластмасс - «Фторакс» и «СтомАкрил». Воспалительная реакция тормозила созревание соединительной ткани капсулы, формирующейся вокруг образцов из полимеров. Вычисление анаэробного индекса по соотношению разных летучих жирных кислот в ротовой жидкости позволяет оценить адаптационные и дизадаптационные процессы у больных сахарным диабетом. Слабое возрастание анаэробного индекса после протезирования с использованием титанового базиса и резкое увеличение индекса при применении акриловой пластмассы в ранние сроки после протезирования свидетельствует о лучшей адаптации пациентов с СД к съемным протезам с титановым базисом. 6. Результаты экспериментальных и клинико- лабораторных исследований свидетельствуют о том, что больным с компенсированной формой сахарного диабета 1 и 2 типа изготовление съемных зубных протезов с металлическим базисом из сплава титана ВТ-14 не вызывают патологических изменений со стороны микробиоценоза и тканей полости рта. Тканевая реакция на титановый имплантат у животных без модели сахарного диабета выражена заметно слабее, чем на полимеры, быстрее идет созревание и фибротизация капсулы, она тоньше и менее выражены дистрофические изменения клеток. При экспериментальном диабете воспалительная реакция на титан усиливается по сравнению с контролем, но остается менее значительной, чем в группах с имплантацией полимеров. Volume 2 Issue 6, June 2022 ISSN 2181-287X Page 63 Volume 2 Issue 6, June 2022 ISSN 2181-287X Page 63 U EURASIAN JOURNAL OF MEDICAL AND NATURAL SCIENCES Innovative Academy Research Support Center 8 3 | SJIF 5 995 www in acad В ходе выполнения поставленных задач усовершенствованы методики «подготовки зуба для протезирования», «получения оттиска зубного ряда», «изготовления литой коронки и ее фиксации» с применением «устройства». Вывод. Разработано устройство для крепления несъемного зубного протеза, позволяющее повысить ретенцию литых протезов на зубах с укороченной клинической коронкой в среднем на 82 %. На основании проведенных анатомо- морфометрических и лабораторно- экспериментальных исследований определены оптимальные параметры «устройства» и разработаны рекомендации по его использованию в зубах с укороченной клинической коронкой в группе премоляров и моляров верхней и нижней челюстей. Практическое внедрение и клиническая апробация в течение 6 лет убедительно доказали эффективность предложенного устройства и метода фиксации, как средства профилактики расцементировки несъемных протезов. References: References: 1. Баум Л., Филипс Р.В., Лунд М.Р. Руководство по практической стоматологии: Пер. с англ. — М.: ОАО «Издательство Медицина», 2005. - 680 с. 1. Баум Л., Филипс Р.В., Лунд М.Р. Руководство по практической стоматологии: Пер. с англ. — М.: ОАО «Издательство Медицина», 2005. - 680 с. 2. Беер Р. Иллюстрированный справочник по эндодонтологии / Рудольф Беер, Михаэль А. Бауман, Андрей М. Киельбаса; Пер. с нем.; Под ред. Е.А.Волкова. — М.: МЕДпресс-информ, 2006. - 240 с. 3. Бир Р. Эндодонтологии / Р.Бир, М.Бауманн, С.Ким. Пер. с англ. Под общ. ред. проф. Т.Ф.Виноградовой. - М.: МЕДпресс- информ, 2004. - 368 с. 3. Бир Р. Эндодонтологии / Р.Бир, М.Бауманн, С.Ким. Пер. с англ. Под общ. ред. проф. Т.Ф.Виноградовой. - М.: МЕДпресс- информ, 2004. - 368 с. 4. Болезни пародонта. Патогенез, диагностика, лечение / А.С.Григорьян, А.И.Грудянов, Н.А.Рабухина, О.А.Фролова. — М.: Меди- 4. Болезни пародонта. Патогенез, диагностика, лечение / А.С.Григорьян, А.И.Грудянов, Н.А.Рабухина, О.А.Фролова. — М.: Меди- цинское информационное агентство, 2004. — 320 с. цинское информационное агентство, 2004. — 320 с. 5. Болезни полости рта / Под ред. Л.М. Лукиных. Н.Новгород: Изд-во Нижегородской государственной медицинской академии, 2004. - 509 с. 5. Болезни полости рта / Под ред. Л.М. Лукиных. Н.Новгород: Изд-во Нижегородской государственной медицинской академии, 2004. - 509 с. 6. Борисенко А.В. Кариес зубов: Практическое руководство. - К.: Книга плюс, 2000. - 344 с сенко А.В. Кариес зубов: Практическое руководство. - К.: Книга плюс, 2000. - 344 с. 7. Борисенко А.В. Секреты лечения кариеса и реставрации зубов.- М : Киша плюс, 2002. - 544с. 7. Борисенко А.В. Секреты лечения кариеса и реставрации зубов.- М : Киша плюс, 2002. - 544с. 8. Боровский Е.В. Клиническая эндодонтия. — М.: АО «Стома- тология», 1999. - 176 с. 8. Боровский Е.В. Клиническая эндодонтия. — М.: АО «Стома- тология», 1999. - 176 с. 9. Боровский Е.В., Жохова Н.С. Эндодонтическое лечение (пособие для врачей). — М.: АО «Стоматология», 1997. — 64 с. 9. Боровский Е.В., Жохова Н.С. Эндодонтическое лечение (пособие для врачей). — М.: АО «Стоматология», 1997. — 64 с. 10. Боровский Е.В., Леонтьев В.К. Биология полости рта. - М.: Медицина, 1991. - 304 с. 10. Боровский Е.В., Леонтьев В.К. Биология полости рта. - М.: Медицина, 1991. - 304 с. 11. Грудянов А.И. Пародонтология. Избранные лекции. — М.: ОАО «Стоматология», 1997.— 32 с. 11. Грудянов А.И. Пародонтология. Избранные лекции. — М.: ОАО «Стоматология», 1997.— 32 с. Volume 2 Issue 6, June 2022 ISSN 2181-287X Page 64 12. References: Дубова М.А., Салова А.В., Хиора Ж.П. Расширение возможностей эстетической реставрации зубов. Нанокомпозиты: Учебное пособие. - СПб., 2005. - 144 с. 12. Дубова М.А., Салова А.В., Хиора Ж.П. Расширение возможностей эстетической реставрации зубов. Нанокомпозиты: Учебное пособие. - СПб., 2005. - 144 с. 13. Ефанов О.И., Дзанагова ТФ. Физиотерапия стоматологических заболеваний. — М.: Медицина, 1980. — 296 с. 13. Ефанов О.И., Дзанагова ТФ. Физиотерапия стоматологических заболеваний. — М.: Медицина, 1980. — 296 с. 14. Заболевания слизистой оболочки полости рта и губ / Под ред. проф. Е.В.Боровского, А.Л.Машкиллейсона. — М.: МЕДпресс, 2001. - 320 с. 14. Заболевания слизистой оболочки полости рта и губ / Под ред. проф. Е.В.Боровского, А.Л.Машкиллейсона. — М.: МЕДпресс, 2001. - 320 с. 15. Иванов В.С. Заболевания пародонта. — 3-е изд., перераб. и доп.- 15. Иванов В.С. Заболевания пародонта. — 3-е изд., перераб. и доп.- М.: Медицинское информационное агентство, 1998. — 296 с. Литература 935 М.: Медицинское информационное агентство, 1998. — 296 с. Литература 935 16. Иорданишвили А.К., Ковалевский А.М. Пульпиты: Учебное пособие. - СПб.: «Нормед-издат», 1999. - 88 с. 16. Иорданишвили А.К., Ковалевский А.М. Пульпиты: Учебное пособие. - СПб.: «Нормед-издат», 1999. - 88 с. 17. Иорданишвили А.К., Ковалевский А.М. Эндодонтическое лечение периодонтитов: Учебное пособие. — СПб.: «Нормед-издат», 2000. - 88 с. 17. Иорданишвили А.К., Ковалевский А.М. Эндодонтическое лечение периодонтитов: Учебное пособие. — СПб.: «Нормед-издат», 2000. - 88 с. 17. Иорданишвили А.К., Ковалевский А.М. Эндодонтическое лечение периодонтитов: Учебное пособие. — СПб.: «Нормед-издат», 2000. - 88 с. Volume 2 Issue 6, June 2022 ISSN 2181-287X Volume 2 Issue 6, June 2022 Volume 2 Issue 6, June 2022 Page 65
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Blendas SAN/NBR: influência do teor de acrilonitrila e da viscosidade da borracha nitrílica nas propriedades mecânicas
Matéria
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ABSTRACT Aiming the development of high toughness polymeric materials, poly(butadiene-co-acrylonitrile) rubbers (NBRs) with acrylonitrile (AN) contents varying from 32.9 to 45.7% were incorporated to poly(styrene-co-acrylonitrile) (SAN) by monoscrew extrusion followed by injection molding. Addition of NBR resulted in significant improvements in the impact strength and the elongation at break, that were strongly influenced by the blend composition, the AN contents and the NBR melt viscosities, but the tensile strength was slightly decreased. The best impact strength results (157.1 ± 3.7J/m) were obtained with a 70/30 (%w/w) SAN/NBR blend using NBR with 33.1% of AN and Mooney viscosity of 51 ML 1+4 (100°C), being ca. 700% higher than the values for pure SAN (22.4 ± 1.1J/m). Scanning electron micrographs (SEM) from fracture surfaces revealed homogeneously dispersed spherical elastomeric domains, and the appearance of yielding and/or crazing processes for all blends. The size of NBR domains decreased as the AN content increased, while the number of NBR domains decreased as the melt viscosity increased. Keywords: Blends, SAN, NBR, tenacification, mechanical properties. Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007 http://www.materia.coppe.ufrj.br/sarra/artigos/artigo10920 Autor Responsável: Sérgio H. Pezzin RESUMO Com o objetivo de desenvolver materiais poliméricos com elevada tenacidade, borrachas de poli(butadieno-co-acrilonitrila) (NBR), com teores de acrilonitrila (NA) variando de 32,9 a 45,7%, foram incorporadas ao poli(estireno-co-acrilonitrila) (SAN), por extrusão seguida de injeção. A adição do NBR resultou em um aumento significativo na resistência ao impacto e na deformação na ruptura, que foram fortemente influenciadas pela composição da blenda, pelo teor de acrilonitrila e pela viscosidade dos NBRs, porém, houve a diminuição da resistência à tração. Os resultados mais expressivos para resistência ao impacto (157,1 ± 3.7 J/m) foram obtidos para a blenda 70/30 (%m/m) utilizando NBR com 33,1% de acrilonitrila e viscosidade Mooney de 51 ML 1+4 (100°C), um valor cerca de 700% maior que o verificado para o SAN puro (22,4 ± 1.1 J/m). A análise da superfície de fratura por microscopia eletrônica de varredura revelou homogeneidade dos domínios elastoméricos dispersos na matriz, bem como o aparecimento de microtrincas e/ou deformação plástica para todas as blendas. O tamanho dos domínios de NBR diminui com o aumento do teor de acrilonitrila presente no NBR, enquanto a quantidade de domínios diminui com o aumento da viscosidade. Palavras chaves: Blendas, SAN, NBR, tenacificação, propriedades mecânicas. Palavras chaves: Blendas, SAN, NBR, tenacificação, propriedades mecânicas. 1 INTRODUÇÃO Os materiais termoplásticos podem ser modificados ou reforçados através da adição de fibras, partículas ou elastômeros [1]. Nas misturas de termoplásticos com elastômeros, quando se submete o material a uma carga, as partículas elastoméricas dispersas podem concentrar ou absorver tensões, provocando uma alteração do estado tensorial da fase matricial e uma intensa deformação plástica. A eficiência da tenacificação depende em geral do tipo específico do modificador empregado, tamanho e distribuição das Autor Responsável: Sérgio H. Pezzin Data de envio: 20/03/07 Data de aceite: 11/07/07 LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. partículas, temperatura de transição vítrea e compatibilidade entre as fases [2]. Podem ser citados como exemplos: NBR/poli(cloreto de vinila) e NBR/EPDM, entre outros [3-4]. Estudos de blendas de SAN/NBR, na composição 70/30 (%m/m), demonstram que existe interação entre as fases, verificada pela variação da temperatura de transição vítrea e pela análise morfológica [5-7]. Cowie e colaboradores [5], estudaram valores da energia de interação segmental para blendas de SAN/NBR, encontrando regiões extensas de miscibilidade. Ahn e colaboradores [6, 7] verificaram que quanto maior o teor de acrilonitrila do NBR, maior a tendência em ocorrer uma interação entre as fases, observando que há uma melhora significativa na propriedade de impacto quando se utiliza NBR com altos teores de acrilonitrila. A miscibilidade e a morfologia de blendas SAN/NBR em várias composições variando o teor de acrilonitrila da borracha de 33 a 45% foi estudada por Ziquinatti e colaboradores (2006) [8]. A adição de NBR resultou em um significativo aumento na resistência ao impacto, fortemente dependente da composição da blenda e do teor de AN da NBR, sendo que o melhor resultado foi alcançado para a composição SAN/NBR 50/50, usando NBR com 45% de AN [8]. Estudos de tenacificação do copolímero SAN com outros polímeros também são encontrados na literatura [9-12]. Wang e colaboradores [9] estudaram o efeito da composição da blenda poliamida/SAN/NBR, utilizando resina fenol-formaldeído (PF) como agente compatibilizante, e observaram uma melhora significativa na tenacidade para a blenda 50/25/25 com 8% de PF. Hwang e colaboradores [10] estudaram a incorporação de polietileno clorado ao SAN, verificando que a mistura é imiscível e que não há melhora nas propriedades de tração e impacto. 1 INTRODUÇÃO A tenacidade de blendas de SAN/policarbonato é melhorada pela adição de partículas de poli(metacrilato-butadieno-estireno), que atuam como agente de adesão entre as fases [11], entretanto a adição de modificador de impacto acrílico não causa um aumento significativo na resistência ao impacto [12]. Este trabalho teve como objetivos obter e a caracterizar misturas de copolímero estireno-acrilonitrila – SAN e copolímero butadieno-acrilonitrila – NBR, variando o teor de acrilonitrila e a viscosidade do NBR, visando o desenvolvimento de um novo material a um custo relativamente baixo, com uma melhora significativa na tenacidade do SAN. Os corpos de prova obtidos através do processo de injeção em moldes específicos normatizados (ISO 572/2001 e ISO 180/2001) foram caracterizados por ensaios mecânicos (impacto e tração), sendo a morfologia avaliada por microscopia eletrônica de varredura (MEV). LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. Os ensaios de tração foram realizados conforme a norma ISO 572/2001 em uma máquina Universal de Ensaios Kratos, com célula de carga de 5000kgf, velocidade de ensaio de 50 mm/min e carga máxima 220kgf. Para a obtenção de valores médios da resistência à tração e da deformação na ruptura, os ensaios de tração foram realizados em oito corpos de prova. Os ensaios de impacto IZOD foram realizados em um equipamento Microtest. Os corpos de prova das blendas foram entalhados e analisados, de acordo com a norma ISO 180/2001, utilizando para o polímero SAN puro um martelo 0,5 Joules e para os corpos de prova das blendas de SAN/NBR martelo de 2 Joules. Para a obtenção dos valores médios do ensaio de impacto foram analisados 10 corpos de prova. As superfícies de fratura dos corpos de prova foram observadas ao microscópio da Zeiss DSM 940 A a 10 kV. 2 EXPERIMENTAL As blendas de SAN (SANGEL LW 6827, Bayer Polímeros S.A.) e NBR (Nitriflex S.A.) com diferentes características (Tabela 1), na proporção 70/30 (%m/m), foram preparadas por extrusão monorosca (Ciola modelo B-50, relação L/D 25, 6:1) seguida de injeção em molde para a obtenção dos corpos de prova (Sandretto, L/D 23,2:1) com controle de temperatura do molde em torno de 70 ± 2ºC. Tabela 1: Características das borrachas nitrílicas. Tabela 1: Características das borrachas nitrílicas. Propriedades NBR-1 NBR-2 NBR-3 Teor de Acrilonitrila (%) 45,7 32,9 33,1 Viscosidade Mooney ML 1+4 (100ºC) 50 81 51 A Tabela 2 contém os parâmetros utilizados no processo de extrusão. Verificou-se que para a obtenção de corpos de prova adequados, as temperaturas de processamento das blendas devem ser inferiores que as utilizadas para o SAN puro, sendo que as mesmas variaram ligeiramente com o teor de AN da NBR, com temperaturas um pouco superiores para a blenda com NBR-1 (48,5% AN). Após a extrusão, as blendas foram resfriadas à temperatura ambiente e trituradas em um moinho de facas Primotécnica (modelo P 2001, série SPD3/2). Tabela 2: Parâmetros utilizados no processo de extrusão na obtenção das blendas 70/30 (%m/m) de SAN/NBR. Parâmetros Utilizados SAN puro SAN/NBR-1 SAN/NBR-2 SAN/NBR3 Temperatura Zona 1 (ºC) 200 160 150 150 Temperatura Zona 2 (ºC) 210 170 160 160 Temperatura Zona 3 (ºC) 210 170 160 160 Rotação da rosca (rpm) 500 500 500 500 Tabela 2: Parâmetros utilizados no processo de extrusão na obtenção das blendas 70/30 (%m/m) de SAN/NBR. Os corpos de prova obtidos através do processo de injeção em moldes específicos normatizados (ISO 572/2001 e ISO 180/2001) foram caracterizados por ensaios mecânicos (impacto e tração), sendo a morfologia avaliada por microscopia eletrônica de varredura (MEV). 569 Figura 2: Tensão máxima obtida nos ensaios de tração para blendas SAN/NBR (70/30, %m/m) com diferentes tipos de NBR. Figura 2: Tensão máxima obtida nos ensaios de tração para blendas SAN/NBR (70/30, %m/m) com diferentes tipos de NBR. Os estudos de AHN et al. [2000] [6] mostram um valor mínimo de resistência à tração, para as blendas que utilizam NBR menor teor de acrilonitrila e tende a ser máximo com o aumento do teor de acrilonitrila do NBR devido à diminuição do tamanho das partículas. A variação dos resultados obtidos através da caracterização mecânica provavelmente está relacionada com o tamanho dos domínios elastoméricos presentes na matriz polimérica e diferentes viscosidades do NBR. Como o tamanho dos domínios está diretamente ligado ao teor de acrilonitrila, portanto, tamanhos menores tendem a suportar a carga aplicada com maior resistência. A diferença de viscosidade também influencia na dispersão da fase elastomérica, sendo que quanto menor a viscosidade, maior a dispersão da fase na matriz polimérica, tornando o material mais resistente à tração. 3.1 Ensaios Mecânicos O comportamento de resistência ao impacto para as blendas SAN/NBR (70/30) (%m/m), com NBRs de diferentes teores de acrilonitrila e viscosidade, encontra-se na Figura 1. Observa-se um aumento significativo na resistência ao impacto com a diminuição do teor de acrilonitrila do NBR, sendo que para a blenda com o NBR-3 o aumento foi de cerca de 700% em relação ao SAN puro e de 67% em relação ao ABS, tornando assim, viável a utilização desta blenda em substituição ao ABS, em aplicações que requeiram alta resistência ao impacto e alta tenacidade. 0 20 40 60 80 100 120 140 160 SAN/NBR-3 SAN/NBR-2 SAN/NBR-1 SAN Resistência ao impacto Izod (J/m) Blendas SAN/NBR (70/30) Figura 1: Resistência ao impacto IZOD de blendas SAN/NBR (70/30) (%m/m) com diferentes tipos de NBR. Blendas SAN/NBR (70/30) Blendas SAN/NBR (70/30) Figura 1: Resistência ao impacto IZOD de blendas SAN/NBR (70/30) (%m/m) com diferentes tipos de NBR. Os ensaios de tração mostraram uma leve diminuição nas tensões máximas para os materiais modificados com NBR (Figura 2). Tal fato era esperado devido à tenacificação do SAN, comprovada pelo ensaio de impacto. Quanto às diferenças de valores de resistência à tração variando o teor de acrilonitrila presentes no NBR, acredita-se que sejam devidas às variações no tamanho dos domínios elastoméricos, sendo que quanto maiores forem os domínios, mais facilmente ocorrerá à ruptura do corpo de prova. 570 LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. 0 5 10 15 20 SAN/NBR-3 SAN/NBR-2 SAN/NBR-1 SAN Resistência ao impacto Izod (MPa) Blendas SAN/NBR (70/30) Tensão máxima (MPa) 0 5 10 15 20 SAN/NBR-3 SAN/NBR-2 SAN/NBR-1 SAN Resistência ao impacto Izod (MPa) Blendas SAN/NBR (70/30) Tensão máxima (MPa) Blendas SAN/NBR (70/30) Blendas SAN/NBR (70/30) 4 CONCLUSÕES Os resultados mostraram que o aumento da resistência ao impacto e da tenacidade do material está relacionado ao tamanho dos domínios de NBR na matriz de SAN, o qual por sua vez depende da viscosidade e do teor de acrilonitrila do NBR. A eficiência da tenacificação aumenta quando os domínios possuem diâmetro maior, tendendo a absorver melhor a tensão aplicada. A blenda SAN/NBR-3 apresenta resistência ao impacto 67% maior que a do ABS e 700% maior que a do SAN. Além disso, a blenda apresenta uma redução de aproximadamente 27% no custo do produto em relação ao ABS, sendo uma excelente alternativa para aplicações que exijam alta resistência ao impacto a um custo relativamente menor. LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. Figura 3: Micrografias eletrônicas de varredura de superfícies de fratura de impacto, 1000x: (a) SAN; (b) blenda SAN/NBR-1, (c) blenda SAN/NBR-2 e (d) blenda SAN/NBR-3 (70/30) (%/m/m). Figura 3: Micrografias eletrônicas de varredura de superfícies de fratura de impacto, 1000x: (a) SAN; (b) blenda SAN/NBR-1, (c) blenda SAN/NBR-2 e (d) blenda SAN/NBR-3 (70/30) (%/m/m). 3.2 Caracterização Morfológica A Figura 3 ilustra as micrografias obtidas por microscopia eletrônica de varredura do SAN, bem como das blendas SAN/NBR-1, SAN/NBR-2 e SAN/NBR-3 nas composições 70/30 (%mm). Observa-se que há uma grande diferença entre a morfologia do SAN puro (fig 3a), que apresenta fratura tipicamente frágil (seta), enquanto a blenda SAN/NBR-3 (70/30) (%m/m) são observados locais de alta deformação plástica (seta) durante o ensaio de impacto (fig 3d). Foi verificado para todas as blendas que houve uma boa homogeneização do elastômero na matriz (figs 3b, 3c 3d). Além disso, nota-se que a diminuição da viscosidade e o aumento do teor de acrilonitrila do NBR leva à diminuição do tamanho dos domínios elastoméricos. 571 571 5 AGRADECIMENTOS Os autores agradecem à Capes pela bolsa de mestrado, à TCGL e à Nitriflex. Os autores agradecem à Capes pela bolsa de mestrado, à TCGL e à Nitriflex. 572 LEITZKE, T.C.; PEZZIN, A.P.T.; PEZZIN, S.H., Revista Matéria, v. 12, n. 4, pp. 568 – 573, 2007. 6 BIBLIOGRAFIA [1] McCAMLEY, P.J., “Reinforced thermoplastics”, Encyclopedia Handbook, Ed. Modern Plastics Magazine, Mc Graw-Hill Inc, v. 136, pp. 127, 1994. [2] GUIMARÃES, M.J.O.C., ROCHA, M.C.G., COUTINHO, F.M.B., “Polietileno de alta densidade tenacificado com elastômero metalocênico”, Polímeros: Ciência e Tecnologia, v. 12, n. 2, pp.76-84, 2002. [3] MORTON, M., Rubber technology, Hall, 3a ed. London, 1998. [3] MORTON, M., Rubber technology, Hall, 3a ed. London, 1998. [4] PRINCY, K.G., JOSEPH, R., SUDHA KARTHA, C., “The effect of functionalized EPDM on curing and mechanical properties of NBR/EPDM blends”, Plastics, Rubber and Composites: Macromolecular Engineering, v.31, n.3, p.114-118, 2002. [5] COWIE, J.M.C, HARRIS, J.H., MCEWEN, I.J., “Blends of SAN and NBR: A guide to the butadiene acrylonitrile segmental interaction”, Macromolecules, v. 25, pp. 5287-5290, 1992. [6] AHN, S.J., KWAN, H.L., BYUNG, K.K., HAN, M.J., “Morphology and physical properties of SAN/NBR blends: The effect of AN content and melt viscosity of SAN”, Journal of Applied Polymer Science, v. 73, pp. 935-941, 1998. [7] AHN, S.J., KWAN, H.L., BYUNG, K.K., HAN, M.J. “Morphology and physical properties of SAN/NBR blends: The effect of AN content in NBR”, Journal of Applied Polymer Science, v. 78, pp. 1961- 1868, 2000. [8] ZIQUINATTI, F., HUGEN, R.G., OLIVEIRA, C.M., COELHO, L.A.F., PEZZIN, S.H., “Miscibility and mechanical behavior of SAN/NBR blends”, Macromolecular Symposia, v. 229, pp. 276-280, 2006. [9] WANG, Z.J., ZHANG, X.F., “Impact properties of dynamically vulcanized nylon/styrene-acrylomitrile copolymer/ nitrile rubber blends”, Polymer Testing, v. 21, pp. 577-582, 2002. [10] HWAUNG, I.J., KIM, B.K, “Modification of poly(styrene-co-acrylonitrile) with chlorinated polyethylene”, Journal of Polymer Engineering, v. 17, pp. 363-381, 1997. [11] NOH, I., OH, J.M., “Morphology – properties relationships for ternary blends of PC, SAN and impact modifier having core-shell structure”, Polymer Korea, v. 20, n. 6, pp. 1088–1100, 1996. [12] DEBIER, D., DEVAUX, J., LEGRAS, R., LEBLANC, D., “Influence of a core-shell rubber phase on the morphology and the impact resistance of a PC SAN blend (75-25)”, Polymer Engineering and Science, v. 34, n. 8, pp. 613–624, 1994. 573
https://openalex.org/W3081695693
https://arts.units.it/bitstream/11368/2970899/1/nanomaterials-10-01707.pdf
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Fluorescent Imprinted Nanoparticles for the Effective Monitoring of Irinotecan in Human Plasma
Nanomaterials
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cc-by
10,253
Received: 29 July 2020; Accepted: 26 August 2020; Published: 29 August 2020 Abstract: Fluorescent, imprinted nanosized polymers for the detection of irinotecan have been synthesised using a napthalimide polymerisable derivative (2-allyl-6-[2-(aminoethyl)-amino] napthalimide) as functional monomer. The imprinted polymers contain ethylene glycol dimethacrylate (EGDMA) as a cross-linker and were prepared by high dilution radical polymerisation in dimethylsulphoxide (DMSO). The material was able to rebind irinotecan up to 18 nmol/mg with good specificity. Fluorescence emission at 525 nm (excitation at 448 nm) was quenched by increasing concentrations of irinotecan via a static mechanism and also in analytically useful environments as mixtures of human plasma and organic solvents. This allowed the direct detection of irinotecan (in the 10–30 µM range) in human plasma treated with acetonitrile; the limit of detection (LOD) was 9.4 nM, with within-run variability of 10% and day-to-day variability of 13%. Keywords: imprinted nanogels; therapeutic drug monitoring; irinotecan; human plasma; fluorescence nanomaterials nanomaterials nanomaterials nanomaterials www.mdpi.com/journal/nanomaterials Nanomaterials 2020, 10, 1707; doi:10.3390/nano10091707 Fluorescent Imprinted Nanoparticles for the Effective Monitoring of Irinotecan in Human Plasma Martina Tommasini 1, Elena Pellizzoni 1,2, Valentina Iacuzzi 2,3, Elena Marangon 4, Paola Posocco 5 , Cristina Forzato 1 , Paolo Bertoncin 3, Giuseppe Toffoli 4,* , Marina Resmini 6,* and Federico Berti 1,* 1 Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy; martina.tommasini28@gmail.com (M.T.); pellizzoni.elena@gmail.com (E.P.); cforzato@units.it (C.F.) 1 Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy; martina.tommasini28@gmail.com (M.T.); pellizzoni.elena@gmail.com (E.P.); cforzato@units.it (C.F.) 2 PhD School in Nanotechnology, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy; valentina.iacuzzi@cro.it 2 PhD School in Nanotechnology, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy; valentina.iacuzzi@cro.it 3 Department of Life Sciences, University of Trieste, Via Giorgieri 5, 34127 Trieste, Italy; pbertoncin@units.it 4 CRO–National Cancer Institute, SOC–Experimental and Clinical Pharmacology, Via Gallini 2, 33081 Aviano (PN), Italy; elenamarangon@hotmail.com 3 Department of Life Sciences, University of Trieste, Via Giorgieri 5, 34127 Trieste, Italy; pbertoncin@units.it 4 CRO–National Cancer Institute, SOC–Experimental and Clinical Pharmacology, Via Gallini 2, 33081 Aviano (PN), Italy; elenamarangon@hotmail.com 5 Department of Engineering and Architecture, University of Trieste, Via Valerio 6/1, 34127 Trieste, Italy; paola.posocco@dia.units.it 6 School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E14NS, UK * Correspondence: gtoffoli@cro.it (G.T.); m.resmini@qmul.ac.uk (M.R.); fberti@units.it (F.B.); Tel.: +39-040-558-3921 (F.B.) 1. Introduction Irinotecan 1a (Figure 1) [1], (Camptosar®, CPT11) (Figure 1) is an inhibitor of topoisomerase I largely used in the therapy of metastatic colorectal cancer. It is administered intravenously as the prodrug of its active metabolite SN-38 1b [2]. The molecule is administered as the hydrochloride salt, where the piperidine nitrogen, with a reported pKa of 8.7, is protonated [3]. The drug shows high pharmacokinetic variability and heavy secondary effects [4], and for this reason, its quantification in plasma is an essential step towards personalised therapy. Early pharmacokinetic studies reported an average plasma concentration of about 1 mg/L (170 nM) [5]. However, this initial reference value seems currently no longer reliable, and in our own clinical experience, we have also observed a range of concentrations between 17 nM and 17 µM with high variability [6]. Such variability highlights the urgent need for therapeutic drug monitoring (TDM) of Nanomaterials 2020, 10, 1707; doi:10.3390/nano10091707 www.mdpi.com/journal/nanomaterials 2 of 15 Nanomaterials 2020, 10, 1707 this drug that can help in the clinical practice to identify the best dose regimen, therefore reducing side effects and resulting in a personalised treatment [7,8]. Nanomaterials 2019, 9, x FOR PEER REVIEW 2 of 15 Figure 1. Structures of irinotecan (a) SN-38 (b) and of the functional monomers 2–6 used in this work. Figure 1. Structures of irinotecan (1a) SN-38 (1b) and of the functional monomers 2–6 used in this work. Figure 1. Structures of irinotecan (a) SN-38 (b) and of the functional monomers 2–6 used in this work. Figure 1. Structures of irinotecan (1a) SN-38 (1b) and of the functional monomers 2–6 used in this work. The drug shows high pharmacokinetic variability and heavy secondary effects [4], and for this reason, its quantification in plasma is an essential step towards personalised therapy. Early pharmacokinetic studies reported an average plasma concentration of about 1 mg/L (170 nM) [5]. However, this initial reference value seems currently no longer reliable, and in our own clinical experience, we have also observed a range of concentrations between 17 nM and 17 μM with high Irinotecan and SN-38 have been detected in human plasma by HPLC-UV, LC-MS and direct MALDI-MS [6,9–11]. Point-of-care devices for irinotecan monitoring have never been described, and they could be very helpful to optimise the therapy. variability [6]. 1. Introduction Such variability highlights the urgent need for therapeutic drug monitoring (TDM) of this drug that can help in the clinical practice to identify the best dose regimen, therefore reducing side effects and resulting in a personalised treatment [7,8]. Irinotecan and SN-38 have been detected in human plasma by HPLC-UV, LC-MS and direct MALDI-MS [6,9–11]. Point-of-care devices for irinotecan monitoring have never been described, and they could be very helpful to optimise the therapy. The key component of any sensing platform is the recognition element that allows it to specifically identify and bind the target analyte. Biomolecules such as antibodies and enzymes have been widely used for this purpose with a variety of targets; however more recently there has been a The key component of any sensing platform is the recognition element that allows it to specifically identify and bind the target analyte. Biomolecules such as antibodies and enzymes have been widely used for this purpose with a variety of targets; however, more recently, there has been a strong interest toward using polymers for recognition. Among the different approaches investigated, molecular imprinting has been shown to work effectively to deliver artificial biomimetic receptors with high molecular recognition properties [12]. been widely used for this purpose with a variety of targets; however, more recently, there has been a strong interest toward using polymers for recognition. Among the different approaches investigated, molecular imprinting has been shown to work effectively to deliver artificial biomimetic receptors with high molecular recognition properties [12]. Molecularly imprinted polymers (MIPs) are well-known in applications such as stationary phases and solid-phase extraction (SPE) for the detection of small molecules, including irinotecan [13], for coating of metal nanoparticles in surface-enhanced Raman spectroscopy (SERS) [14], and as d d li t [15] A li ti i t l i [16] d i [17] h b t d l Molecularly imprinted polymers (MIPs) are well-known in applications such as stationary phases and solid-phase extraction (SPE) for the detection of small molecules, including irinotecan [13], for coating of metal nanoparticles in surface-enhanced Raman spectroscopy (SERS) [14], and as drug delivery systems [15]. Applications in catalysis [16] and sensing [17] have been reported also with soluble micro- and nano-structured imprinted materials. drug delivery systems [15]. Applications in catalysis [16] and sensing [17] have been reported also with soluble micro- and nano-structured imprinted materials. 1. Introduction A MIP towards camptothecin was used in solid-phase extraction coupled with HPLC to develop an analytical methodology, with a good linearity in the range of 1–200 µg·mL−1 (2.9–574.2 µmol L−1) and a LOD of 0 13 µg mL−1 (0 4 µmol L−1) [18] A MIP towards camptothecin was used in solid-phase extraction coupled with HPLC to develop an analytical methodology, with a good linearity in the range of 1–200 µg·mL−1 (2.9–574.2 µmol L−1) and a LOD of 0.13 µg mL−1 (0.4 µmol L−1) [18]. and a LOD of 0.13 µg mL (0.4 µmol L ) [18]. An imprinted polymeric material could be used as the sensing material for irinotecan and to generate a detectable signal upon interaction with the drug. Here, we present our work on the design, synthesis, and characterisation of fluorescent imprinted nanoparticles that were used for the detection and quantification of irinotecan in human plasma samples. This represents a first step towards the future development of a sensor for the rapid detection of irinotecan. The sensing nanomaterial exploits a fluorescent reporter directly embedded inside the matrix. Five fluorescent napthalimide derivatives (2–6) were evaluated by studying the interactions with the target analyte via 1H-NMR. The MIPs were characterised through dynamic light scattering (DLS) and transmission electron microscopy (TEM); rebinding of irinotecan was studied by HPLC and fluorescence An imprinted polymeric material could be used as the sensing material for irinotecan and to generate a detectable signal upon interaction with the drug. Here, we present our work on the design, synthesis, and characterisation of fluorescent imprinted nanoparticles that were used for the detection and quantification of irinotecan in human plasma samples. This represents a first step towards the future development of a sensor for the rapid detection of irinotecan. The sensing nanomaterial exploits a fluorescent reporter directly embedded inside the matrix. Five fluorescent napthalimide derivatives (2–6) were evaluated by studying the interactions with the target analyte via 1H-NMR. The MIPs were characterised through dynamic light scattering (DLS) and transmission electron microscopy (TEM); rebinding of irinotecan was studied by HPLC and fluorescence measurements, first in simple environments and then in human plasma samples treated with acetonitrile. 2.3. 1H-NMR Titrations Irinotecan HCl (2.3 mg, 3.40 µmol) was dissolved in 850 µL of DMSO-d6 to a 4 mM concentration, and 5 µL amounts of monomer mother solutions in DMSO-d6 were added to obtain final concentrations from 2 mM to 40 mM. 1H NMR spectra were recorded after each addition. The overall volume change upon additions was 60 µL (6.5%), and a control experiment was carried out by addition of the same volumes of solvent. 2.2. Instrumentation NMR spectra (500 MHz) were recorded on a Varian 500 spectrometer (Palo Alto, CA, USA). HPLC analyses were run on an Agilent series 1100 liquid chromatograph (Santa Clara, CA, USA), with a Phenomenex (Torrance, CA, USA), Luna C18-5µ column with a column guard and a 20 µL loop. Fluorimetric titrations were performed on a CARY Eclipse (Varian) spectrometer with orthogonal geometry with a square cuvette of 0.5 cm optical path. TEM images were recorded with a Camera Olympus QUEMESA (Tokyo, Japan) and software RADIUS 2.0 (EMSIS) (Münster, Germany) on a TEM images Philips EM208 (Amsterdam, The Netherlands) at 100 kV using a 200-mesh copper grid with carbon film. Dynamic Laser Light Scattering was performed on a Zetasizer nano-S (Malvern Panalytical, Malvern, UK) instrument. Data analysis and regressions were carried out using Sigma Plot 13 (Sysdat Software Inc., San Jose, CA, USA). 2.1. Chemicals Irinotecan hydrochloride was purchased by Bepharm ltd (Shangai, China). The other reagents and solvents were from Sigma-Aldrich (Milano, Italy). Human plasma (pool) was collected at CRO-National Cancer Institute of Aviano from 14 healthy volunteers—seven males and seven females in the 25–50 year 3 of 15 Nanomaterials 2020, 10, 1707 age range. All subjects gave their informed consent for inclusion before they participated in the study. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Ethics Committee of CRO–National Cancer Institute (Project identification code 2009-25). 2.6. Transmission Electron Microscopy 0.2 mg of MIP F were suspended in 1 mL of distilled water, and the mixture was stirred for 30 min. The resulting solution was diluted 40 times with distilled water and stirred for further 10 min. A drop was then placed on a grid coated with amorphous carbon and the solution was allowed to dry at room temperature; TEM images of MIP F were recorded. 0.25 mg mL−1 DMSO solutions of each material were filtered on 0.45 µm filters and the DLS measures were carried out in triplicate in a 1 mL quartz cuvette with light path of 1 cm. 0.25 mg mL−1 DMSO solutions of each material were filtered on 0.45 µm filters and the DLS measures were carried out in triplicate in a 1 mL quartz cuvette with light path of 1 cm. Table 2. Characterisation of the imprinted materials. MIP Monomer 5 % a Co-Monomer% a Cross-Linker % a YieldMIP (NIP)% b Irinotecan Rebinding c nmol/mg Specificity IF d Fluorimetry % quenching e KSV f 105 L/mol DLS Size(nm) g PDI h A 10 MAA 70 92 44 1.6 - 16.1 ± 1.0 20 (98) 0.062 B 10 MAA 60 93 49 1.0 - 40.9 ± 2.3 30 (80) 0.056 C 15 MAA 70 58 25 0.6 17 19.0 ± 6.1 (15) (63) 0.101 0.136 D 15 NIPAM (15) 70 69 8 0.9 - 15.7 ± 1.4 (49) 0.089 E 15 AA 70 73 5 0.7 - 27.9 ± 2.6 15 (41) 0.093 F 30 - 70 77 19 2.5 38 13.1 ± 2.0 (42) 43.5 ± 1.8 0.153 a: mol% composition of the reacting mixtures leading to MIPs (% amount referred to the reactive monomers, excluding the template); b: % yield calculated from the total mass of reagents and the mass of the resulting MIPs (and NIPs); c: measured by HPLC after 20 min; d: ratio between the amount of irinotecan captured by the MIP and that captured by its corresponding NIP; e: % amount of quenching of the emission of 60 µg/mL MIPs in 3:1 mixtures of methanol and water (MIPs A-E) or acetonitrile and water (F) after the addition of 1 µM irinotecan; f: from Stern–Volmer plots in the 10 nM–10 µM range of irinotecan added; g: size distribution by number; h: polydispersity index as the ratio between the standard deviation of particles size and their average size. 2.7. Rebinding Tests 1.5 mg of each polymer were dissolved in 1.5 mL of a 100 µM 1a water solution. The mixtures were stirred at room temperature, and 200 µL aliquots were analysed by HPLC after centrifugation (10,000 rpm, 10 min) at different times (from 10 min to 24 h). The concentration of residual drug was obtained from a calibration curve (reported in the Supplementary Figure S1), and the amount captured by the polymer was calculated by difference. HPLC analyses were carried out at 25 ◦C with a 75:25 water:acetonitrile mobile phase (0.05% TFA), at a 1 mL/min flux and UV detection (363 nm). 2.4. Synthesis of the Polymers (General Procedure) The MIPs and their corresponding not imprinted polymers (NIPs) were prepared according to ref. [19]. The template and the functional monomer were stirred in anhydrous DMSO in a vial under an argon atmosphere, and then the cross-linker and AIBN were added. The vial was sealed and kept at 70 ◦C for four days. Each polymer was synthesised both in presence of the template molecule, and without it. The resulting clear solutions were dialysed (cut off3.5 kDa) against water for two days, against a MeOH:AcOH (8:2) mixture for two days and against water for five additional days, changing the solvent twice a day. The solutions were then freeze-dried to obtain fluffy solids. The amounts of reactants for the synthesis of each polymer are reported in Table 1, while % compositions of the reacting mixtures, yields and sizes are reported in Table 2. Table 1. Composition of the polymerisation mixtures. Polymer Template [mg] Functional Monomer [mg] AIBN [mg] Co-Monomer [mg] Cross-Linker [mg] DMSO [mL] MIP-A 41.0 10.0 17.0 MAA 6.1 46.2 6.61 NIP-A - MIP-B 41.0 15.0 17.0 MAA 12.2 59.5 7.88 NIP-B - MIP-C 41.0 15.0 17.0 MAA 4.3 46.0 5.92 NIP-C - MIP-D 41.0 15.0 17.0 NIPAM 5.7 46.2 6.06 NIP-D - MIP-E 41.0 15.0 17.0 AA 3.5 46.2 5.87 NIP-E - MIP-F 41.0 30.0 17.0 - 46.2 6.85 NIP-F - Table 1. Composition of the polymerisation mixtures. 4 of 15 Nanomaterials 2020, 10, 1707 Table 2. Characterisation of the imprinted materials. 2.9. Fluorescence Titrations in Plasma Plasma samples were treated with three volumes of acetonitrile to precipitate proteins. The samples were submitted to centrifugation three times (10 min, 13,000 rpm, 4 ◦C). 400 µL of 60 µg/mL MIP F solution in a 3:1 acetonitrile:plasma mixture were then titrated with increasing concentrations of irinotecan from 5 nM to 2 µM, using excitation and emission wavelengths of 448 and 525 nm (5 nm slits) as described above. The titrations were carried out in triplicate, and the emission data were used to obtain a calibration curve as described in the result section. 2.8. Fluorimetry The fluorescent MIPs/NIPs were dissolved in 3:1 acetonitrile:water mixtures at 60 µg/mL final concentration by diluting their mother 0.25 mg mL−1 DMSO solutions. Increasing amounts of 1a, from 20 nM to 25 µM, were then added from mother DMSO solutions. Fluorescence emission spectra were recorded at 448 nm excitation. The spectra were recorded after 5 min from the addition of 1a. Titration data were obtained at excitation and emission wavelengths of 448 and 525 nm. All the titrations were triplicated, and the emission was corrected for inner filter effects [20], using Equation (1): Fcorr = Fobs × 10( Aexc−Aem 2 ) (1) (1) where Fcorr is the corrected fluorescence emission, Fobs is the observed one, and Aexc and Aem are the vis absorbance of 1a at the excitation and emission wavelengths at the same concentration used in the titration point leading to Fobs. materials 2020, 10, 1707 5 of 1 Nanomaterials 2020, 10, 1707 5 of 15 Stern–Volmer analyses were carried out according to Equation (2): F0 F = 1 + KSV[1a] where KSV = kqτ0 (2) (2) where F0 is the initial value of fluorescence emission, F is the emission after the addition of 1a, KSV is the Stern–Volmer constant, kq is the quenching constant, and τ0 is the decay time of the MIPs fluorophore, which was assumed equal to 8.3 ns as that of the naphtalimide derivatives reported in the literature [21]. 3.1. Selection of Functional Monomers Irinotecan is a fluorescent molecule (its fluorescence emission spectrum is compared with that of naphtalimide derivative 5 in Supplementary Figure S2). Its fluorescence has been exploited for direct quantification from various biological matrices, as reported by different research groups [2,9,22,23]. Poujol et al. developed one of the most sensitive HPLC-fluorescence methods for irinotecan quantification in human plasma or saliva, with a LOD of 0.5 µg/L (about 0.7 nM) observed for both matrices [24]. However, its fluorescence intensity (360 nm excitation and 420 nm emission) can be altered by interferences with plasma components, and it cannot be directly used in a sensor for the direct quantification in plasma without a preliminary sample preparation step, for example, using liquid chromatography. According to our previous results on the development of imprinted nanogels towards sunitinib [19], we have first attempted to use polymerisable derivatives of amino acids as the potential fluorescent monomers also in this project, but their spectral properties were not suitable. We have therefore evaluated a number of different fluorophores known to emit in the region around 500 nm to avoid both plasma auto-fluorescence and the irinotecan fluorescence emission. We focused on naphtalimide derivatives 2–6, able to emit around 520 nm when excited at 450 nm (Figure 1 and Figure S2) [25]. Such derivatives have been already employed as fluorescent MIP monomers [26–28]; for example, monomer 5 was employed by Rouhani et al. to develop a MIP sensor for caffeine, which showed a quenching of its fluorescence upon binding to the template with a limit of detection of 6.3 µM [29]. These very fluorescent molecules have been also used as probes for the detection of acidic drugs, biomolecules [30], and anions [31]. We have identified a small set of naphtalimide monomers (2–6) and synthesised them by literature methods [32–35]. They all contain the same N-allyl polymerisable group, and different chains substituted in the aniline ring, potentially capable to interact with irinotecan in different ways. The study of the binding interactions of the potential fluorophores with the target analyte was initially done by NMR [19]. The experiments were carried out in DMSO, the same solvent used during the polymerisation, to ensure that a strong interaction would remain in place. Proton NMR titrations of 4 mM irinotecan with increasing amounts of the synthesised fluorescent functional monomers (from 2 mM to 40 mM) were performed (Figure 2). 3.1. Selection of Functional Monomers 6 of 15 e perfor Nanomaterials 2020, 10, 1707 mounts of the synthesis ure 2). a b Figure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents o 2 (yellow), 3 (cyan), 4 (blue), 5 (red), and 6 (green); (b) variation of chemical shift of selected protons upon titration with monomer 5. In general, following the addition of the monomers, most of irinotecan’s protons er fields, suggesting a shielding due to the close presence of the monom d d d d f l h h d h h Figure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents of mon 2 (yellow), 3 (cyan), 4 (blue), 5 (red), and 6 (green); (b) variation of chemical shift of selected irino protons upon titration with monomer 5. In general, following the addition of the monomers, most of irinotecan’s protons were gher fields, suggesting a shielding due to the close presence of the monomer (Figure 2a). Com nd 3 did not interact significantly with the drug (with the exception of the piperidinium a b gure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents of mon Figure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents of monomer b gure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents of mono yellow), 3 (cyan), 4 (blue), 5 (red), and 6 (green); (b) variation of chemical shift of selected irinote otons upon titration with monomer 5. Figure 2. (a) Variation of chemical shifts of irinotecan protons after adding 10 equivalents of monomer 2 (yellow), 3 (cyan), 4 (blue), 5 (red), and 6 (green); (b) variation of chemical shift of selected irinotecan protons upon titration with monomer 5. In general, following the addition of the monomers, most of irinotecan’s protons were shifte gher fields, suggesting a shielding due to the close presence of the monomer (Figure ompounds 2 and 3 did not interact significantly with the drug (with the exception of In general, following the addition of the monomers, most of irinotecan’s protons were shifted to higher fields, suggesting a shielding due to the close presence of the monomer (Figure 2a). 3.2. Synthesis and Characterisation of the Polymers A small library of MIPs was synthesised using a combination of functional monomer 5 and the co-monomers methacrylic acid (MAA), acrylamide (AA), and N-isopropylacrylamide (NIPAM) while EGDMA was used as cross-linker, and the template used was in all cases of irinotecan. MAA was considered as the first option as irinotecan contains a tertiary amino group, and proton transfer was expected to lead to a strong ionic interaction. AA and NIPAM are both hydrogen donors and acceptors and could favourably interact with irinotecan in both ways. Moreover, the isopropyl group of NIPAM could be involved in hydrophobic interactions with aromatic systems of the target. Finally, the cross-linker EGMA is a hydrogen bond acceptor and could also interact with the hydroxyl groups present on irinotecan. For each preparation, a set of MIPs and NIPs were obtained. The characterisation of each polymer was based on three criteria: rebinding capacity towards irinotecan, specificity as measured by the imprinting factor, and finally ability to give a significant fluorescence change upon rebinding of the target. Nanogels were obtained via high dilution radical polymerisation, using a non-covalent approach for imprinting [36]. This methodology, developed by N. Graham, allows to obtain polymers with very low polydispersity, as previously demonstrated by our group [37] and others [38]. The choice of DMSO as the solvent allows good solubility of all the reacting monomers and cross-linker while allowing electrostatic interactions to take place during the imprinting stage. The critical monomer concentration was assumed at 1% (in weight), while the porogen solvent constituted the 99% (in weight). We have verified that irinotecan is stable under the conditions required by this kind of synthesis. The relevant data for all the MIPs are reported in Table 2. All polymer preparations were analysed by DLS and the size reported in Table 2 is the one obtained by number. With nanoparticles so small, often the data presented by intensity are negatively affected by even small contaminants and size by number is preferable [39,40]. DLS distributions for MIP and NIP F are reported in the Supplementary Materials. A first set of MIPs was prepared using monomer 5 and MAA as co-monomer (MIPs A-C). MIPs A and B were obtained in high yields, together with their corresponding NIPs. The polymers showed high rebinding of irinotecan in water, capturing almost all the drug available already after 10 min (Figure 3). 3.1. Selection of Functional Monomers Compounds 2 and 3 did not interact significantly with the drug (with the exception of the piperidinium proton), 7 of 15 Nanomaterials 2020, 10, 1707 while derivatives 4, 5, and 6 showed the largest proton shifts. In particular, compounds 4 and 5 showed a similar behaviour affecting mainly the protons of the first piperdidine ring (protons at C-20, C-22, C-19, C-23). (Figure 2) On increasing the amount of 4 and 5, a plateau is obtained after the addition of one equivalent of functional monomer (Figure 2b). In reverse titrations carried out with monomers 4 and 5 at constant concentration and at increasing concentrations of irinotecan, large shifts of the aminoalkyl chains of the two monomers are observed (Supplementary Figure S3). The main interaction is therefore occurring between the amino groups of the partners, either by hydrogen bonding or proton exchange. Further π–π stacking interactions also occurred between the aromatic structure of napthalimide and the quinoline moiety of the anticancer agent, as suggested by changes in the shifts of the aromatic protons. A clear trend towards saturation of the change of chemical shift was not observed with the other monomers. The final decision was in favour of compound 5 rather than 4; the conformational freedom of the two compounds, which is minor in the shorter chain of 5, was also taken into account. Monomer 5 was thus used in all the preparations. 3.2. Synthesis and Characterisation of the Polymers However, the corresponding NIPs were also able to capture significant amounts of irinotecan, and evidence of imprinting was observed only in MIP A, which gave a 1.6 imprinting factor. If the amount of MAA is reduced as in MIP C, both chemical yield and rebinding are reduced. MIPs A and B were unable to show any change in fluorescence emission upon titration with irinotecan, while some quenching was obtained by decreasing the amount of MAA as in C. The amount of quenching was rather small compared to the initial emission, but nevertheless, the Stern–Volmer and quenching constants, measured at 450 nm emission and 520 nm excitation after inner filter effects correction, were consistent with a static phenomenon. 8 of 15 e result ecomes 8 of 15 e result ecomes Nanomaterials 2020, 10, 1707 apparent effect due t f l k f i i more evident as the monomers are here less reactive than MAA. Figure 3. (a) Decay of irinotecan concentration in 100 μM solutions in the presence the MIPs; (b) decay of irinotecan concentration in 100 μM solutions in the presence of the NIPs. Figure 3. (a) Decay of irinotecan concentration in 100 µM solutions in the presence the MIPs; (b) decay of irinotecan concentration in 100 µM solutions in the presence of the NIPs. ve than MAA. Figure 3. (a) Decay of irinotecan concentration in 100 μM solutions in the presence the MIPs; (b) decay of irinotecan concentration in 100 μM solutions in the presence of the NIPs. Figure 3. (a) Decay of irinotecan concentration in 100 µM solutions in the presence the MIPs; (b) decay of irinotecan concentration in 100 µM solutions in the presence of the NIPs. MIP F was also investigated by transmission electron microscopy using a carbon-coated grid. The relative images are reported in Figure 4 and gave an average particle size of 6.2 ± 3.4 nm. This result was consistent with the one obtained by DLS, as in TEM measures, the solvation sphere is obviously not present. The particles dimensions observed at TEM were comparable to the ones reported in the literature for similar MIPs. The higher polydispersity observed in TEM in comparison to DLS is most likely due to the formation of small aggregate fractions on drying the solvent on the TEM grid. 3.2. Synthesis and Characterisation of the Polymers As the unsatisfactory optical performance was likely due to preferential rebinding by MAA rather than by the fluorescent monomer, a second set of fluorescent imprinted polymers for irinotecan (MIPs D–E) was then prepared as follows: 15% (mol) of monomer 5, and 15% (mol) of different commercially available co-monomers, as N-isopropyl acrylamide (NIPAM) and acrylamide (AA). Such materials were obtained in lower yield, and comparison of rebinding data confirms that MAA in MIP A-C was indeed responsible for most of the rebinding. Rebinding by MIPs D-E was by far lower, and unfortunately, the use of acrylamide or NIPAM improved neither MIPs’ specificity nor their fluorescence quenching. Our expectations about the co-monomers were thus frustrated by the experimental evidence: MAA is even too much able to interact with irinotecan and obscures any interaction with the fluorescent monomer, while AA and NIPAM were not helpful at all. MIP F was therefore finally prepared, using 30% of 5, without any co-monomer, and 70% of EGDMA as cross-linker. This material was obtained with a better yield compared to MIPs D-E, and its rebinding capacity was significantly higher (Figure 3). Moreover, the imprinting factor was enhanced to a more promising value of 2.5. In the synthesis of NIPs D, E, and F, the yield was clearly less favourable than that of the corresponding MIP. We have verified by UV-VIS that this is not an apparent effect due to residual captured irinotecan inside the MIPS. The effect is probably the result of a lack of a proximity catalytic effect by the template, which is not present in the NIPs, and becomes more evident as the monomers are here less reactive than MAA. MIP F was also investigated by transmission electron microscopy using a carbon-coated grid. The relative images are reported in Figure 4 and gave an average particle size of 6.2 ± 3.4 nm. This result was consistent with the one obtained by DLS, as in TEM measures, the solvation sphere is obviously not present. The particles dimensions observed at TEM were comparable to the ones reported in the literature for similar MIPs. The higher polydispersity observed in TEM in comparison to DLS is most likely due to the formation of small aggregate fractions on drying the solvent on the TEM grid. 9 of 15 f 15 Nanomaterials 2020, 10, 1707 nomaterials 2019 9 x FOR PEER (a) (b) Figure 4. 3.2. Synthesis and Characterisation of the Polymers TEM images of MIP F; bar 20 nm. (a,b): two regions of the sample imetry and Evaluation in Human Plasma fluorescence studies were performed directly with MIP F in a solution of acetonitrile:wat as this medium was the same as the treated plasma samples. Optimisation of t nce emission was carried out by varying the concentration of polymer used A concentrati Figure 4. TEM images of MIP F; bar 20 nm. (a,b): two regions of the sample. Fluorimetry and Evaluation in Human Plasma The fluorescence studies were performed directly with MIP F in a solution of acetonitrile /v), as this medium was the same as the treated plasma samples. Optimisation of the fluore sion was carried out by varying the concentration of polymer used. A concentration of 60 d fid h b h ffi l h h l h ld ll l (a) (a) (a) (b) Figure 4 TEM images of MIP F; bar 20 nm (a b): two regions of the sample (b) gure 4. TEM images of MIP F; bar 20 nm. (a,b): two regions of the sample Figure 4. TEM images of MIP F; bar 20 nm. (a,b): two regions of the sample. Fluorimetry and Evaluation in Human Plasma 3.3. Fluorimetry and Evaluation in Human Plasma Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma . Fluorimetry and Evaluation in Human Plasma The fluorescence studies were performed directly with MIP F in a solution of acetonitrile:water 1 v/v), as this medium was the same as the treated plasma samples. Optimisation of the orescence emission was carried out by varying the concentration of polymer used. A concentration 60 μg/mL MIP was identified as the best one, showing a sufficiently high signal that would allow lean and reproducible change of emission. The fluorescence emission spectra were recorded after The fluorescence studies were performed directly with MIP F in a solution of acetonitrile:water (3:1 v/v), as this medium was the same as the treated plasma samples. Optimisation of the fluorescence emission was carried out by varying the concentration of polymer used. A concentration of 60 µg/mL MIP was identified as the best one, showing a sufficiently high signal that would allow a clean and reproducible change of emission. The fluorescence emission spectra were recorded after five minutes 10 of 15 Nanomaterials 2020, 10, 1707 following the addition of 1a (Figure 5a), as this was sufficient to stabilise the signal after the addition. The decay of the maximum wavelength emission is reported in Figure 5b. Nanomaterials 2019, 9, x FOR PEER REVIEW 10 of 15 Figure 5. (a) Emission spectra of 60 μg/mL MIP F at increasing concentrations of irinotecan in 3:1 acetonitrile:water (excitation 448 nm); (b) fluorescence decrease at 525 nm of 60 μg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:water. Figure 5. (a) Emission spectra of 60 µg/mL MIP F at increasing concentrations of irinotecan in 3:1 acetonitrile:water (excitation 448 nm); (b) fluorescence decrease at 525 nm of 60 µg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:water. Figure 5. (a) Emission spectra of 60 μg/mL MIP F at increasing concentrations of irinotecan in 3:1 acetonitrile:water (excitation 448 nm); (b) fluorescence decrease at 525 nm of 60 μg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:water. Figure 5. (a) Emission spectra of 60 µg/mL MIP F at increasing concentrations of irinotecan in 3:1 acetonitrile:water (excitation 448 nm); (b) fluorescence decrease at 525 nm of 60 µg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:water. Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma The emission data are reported in Figure 5 as the fluorescence read from the instruments; this allows to see clearly that quenching is not complete, and involves about 38% of the initial emission, reaching a plateau at 1 μM irinotecan. Although not complete, the decrease of emission is large enough to allow its evaluation, and a Stern–Volmer analysis was carried out first (Supplementary Figure S4). The trend is linear in the 5–100 nM range and gave a Stern–Volmer constant of 4.35 × 106 L mol−1; assuming a decay time of the fluorophore of 8.3 ns [21], a quenching constant of 5.24 × 1014 L mol−1 s−1 was obtained, fully consistent with static quenching. We have carried out some attempt to improve the amount of quenching, and actually, at concentrations of irinotecan exceeding 3 μM, and up to 25 μM, a further 15% amount of quenching can be obtained (Supplementary Figure S5). This change could be either due to a significant dynamic quenching at high irinotecan concentrations or to the existence of a further population of low affinity-low specificity binding sites in the MIP. Nevertheless, we have not considered presently this second decrease of emission as useful in the evaluation of the dynamic range of the MIP due to the occurrence of the plateau at 1 μM. This limit could not be overcome by changing the experimental conditions, and the residual emission of the MIP is most likely due to a fraction of fluorogenic monomers that is buried inside the polymeric nanoparticles and cannot interact with irinotecan. Attempts to increase the polymer concentration up to 120 μg/mL resulted in aggregation and precipitation of the sample. The emission data are reported in Figure 5 as the fluorescence read from the instruments; this allows to see clearly that quenching is not complete, and involves about 38% of the initial emission, reaching a plateau at 1 µM irinotecan. Although not complete, the decrease of emission is large enough to allow its evaluation, and a Stern–Volmer analysis was carried out first (Supplementary Figure S4). The trend is linear in the 5–100 nM range and gave a Stern–Volmer constant of 4.35 × 106 L mol−1; assuming a decay time of the fluorophore of 8.3 ns [21], a quenching constant of 5.24 × 1014 L mol−1 s−1 was obtained, fully consistent with static quenching. Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma We have carried out some attempt to improve the amount of quenching, and actually, at concentrations of irinotecan exceeding 3 µM, and up to 25 µM, a further 15% amount of quenching can be obtained (Supplementary Figure S5). This change could be either due to a significant dynamic quenching at high irinotecan concentrations or to the existence of a further population of low affinity-low specificity binding sites in the MIP. Nevertheless, we have not considered presently this second decrease of emission as useful in the evaluation of the dynamic range of the MIP due to the occurrence of the plateau at 1 µM. This limit could not be overcome by changing the experimental conditions, and the residual emission of the MIP is most likely due to a fraction of fluorogenic monomers that is buried inside the polymeric nanoparticles and cannot interact with irinotecan. Attempts to increase the polymer concentration up to 120 µg/mL resulted in aggregation and precipitation of the sample. μg gg g p p p As MIP F showed suitable characteristics as potential recognition element for a sensing device, in the low concentration range, we decided to further explore its properties with human plasma. Given that, in our clinical practice, plasma samples are currently treated with acetonitrile to denature proteins prior to LC-MS analysis, we decided to use the same mixture of acetonitrile and plasma [6]. On switching from 3:1 acetonitrile:water mixtures to 3:1 acetonitrile:plasma, no significant loss of sensitivity was observed, and the titration curves of fluorescence decay were almost superimposable to those obtained in the first measures in water. The plot is reported in Figure 6, where emission is given in a relative way, to allow evaluation of the curve as a potential calibration curve for the detection of irinotecan. Normalisation has been carried out by taking the maximum change in emission as the difference between the initial emission and the emission read at 1μM irinotecan. The normalised curve is presented here, as in principle, it can be replicated on moving to other As MIP F showed suitable characteristics as potential recognition element for a sensing device, in the low concentration range, we decided to further explore its properties with human plasma. Given that, in our clinical practice, plasma samples are currently treated with acetonitrile to denature proteins prior to LC-MS analysis, we decided to use the same mixture of acetonitrile and plasma [6]. Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma On switching from 3:1 acetonitrile:water mixtures to 3:1 acetonitrile:plasma, no significant loss of sensitivity was observed, and the titration curves of fluorescence decay were almost superimposable to those obtained in the first measures in water. The plot is reported in Figure 6, where emission is given in a relative way, to allow evaluation of the curve as a potential calibration curve for the detection of irinotecan. Normalisation has been carried out by taking the maximum change in emission as the difference between the initial emission and the emission read at 1 µM irinotecan. The normalised curve is presented here, as in principle, it can be replicated on moving to other instruments. 11 of 15 11 of 15 Nanomaterials 2020, 10, 1707 , , Figure 6. Fluorescence decrease of 60 μg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:human plasma. The decrease is reported as the fraction of the maximum one. Figure 6. Fluorescence decrease of 60 µg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:human plasma. The decrease is reported as the fraction of the maximum one. Figure 6. Fluorescence decrease of 60 μg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:human plasma. The decrease is reported as the fraction of the maximum one. Figure 6. Fluorescence decrease of 60 µg/mL MIP F at increasing concentration of irinotecan in 3:1 acetonitrile:human plasma. The decrease is reported as the fraction of the maximum one. In this experiment, a high sensitivity for irinotecan was observed, with a LOD of 12 nM, evaluated with the 3σ method. The LOD in water was found to be 16 nM, closely similar to that in plasma. The intra-assay precision in plasma:acetonitrile on a triplicated titration was 10.2% in the whole dynamic range. The MIP sensor gives a very stable and reproducible response during time, and the experiments were carried out over one month. The sensitivity was unchanged along this time time, with an average LOD of 10 nM. The inter-assay precision of the whole curve was found to be 13 2% In this experiment, a high sensitivity for irinotecan was observed, with a LOD of 12 nM, evaluated with the 3σ method. The LOD in water was found to be 16 nM, closely similar to that in plasma. The intra-assay precision in plasma:acetonitrile on a triplicated titration was 10.2% in the whole dynamic range. Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma The MIP sensor gives a very stable and reproducible response during time, and the experiments were carried out over one month. The sensitivity was unchanged along this time time, with an average LOD of 10 nM. The inter-assay precision of the whole curve was found to be 13.2%. 13.2%. The dynamic range investigated covers the low concentration side of the therapeutic range of irinotecan, which was found from 17 nM to 17 μM in our collection of clinical samples. In order to evaluate the potential of a detection system exploiting MIP F for irinotecan quantification in human plasma, we have obtained a calibration curve from a fit of the fluorescence to a tetraparametric logistic curve (Equation 3) The dynamic range investigated covers the low concentration side of the therapeutic range of irinotecan, which was found from 17 nM to 17 µM in our collection of clinical samples. In order to evaluate the potential of a detection system exploiting MIP F for irinotecan quantification in human plasma, we have obtained a calibration curve from a fit of the fluorescence to a tetraparametric logistic curve (Equation (3)). 1 െ ∆𝐹 ∆𝐹 = 𝑑+ 𝑎െ𝑑 ሺሾଵሿ௟ ௕ሻ (3) 1 − ∆F ∆Fmax = d + a −d 1 + 10([1a]logcb) (3) (3) (3) ∆𝐹௠௔௫ 1 + 10ሺሾଵ௔ሿ௟௢௚௖௕ሻ ( ) The fit gave r > 0.9985 and r2 > 0.9970, with standard error on estimates 0.0247 an p < 0.0001 on the best-fitted parameters a–d. Using Equation (3) and its parameters, a very satisfactory outcome is obtained when the concentration of irinotecan is calculated in a series of samples obtained by dissolving irinotecan in the same pool of human plasma used to build the calibration curve, and the The fit gave r > 0.9985 and r2 > 0.9970, with standard error on estimates 0.0247 an p < 0.0001 on the best-fitted parameters a–d. Using Equation (3) and its parameters, a very satisfactory outcome is obtained when the concentration of irinotecan is calculated in a series of samples obtained by dissolving irinotecan in the same pool of human plasma used to build the calibration curve, and the correlation between real and calculated values is reported in Figure 7. correlation between real and calculated values is reported in Figure 7. The data are linearly correlated with r2 = 0.9955, a slope of 1.0001 and an intercept of 2.35 nM. The data a 4. Conclusions The average accuracy of the calculated data is −0.6%. Although less challenging than a measure of recovery from authentic patient samples of known concentration before and after spiking (such samples are presently not available to us), this test shows nevertheless that the fluorescence data are very stable. As to the selectivity of the system, a first indication is given by the fact that, on moving from solvent to human plasma, no changes in the performance are observed. The titration curve in plasma is almost superimposable to that obtained in solvent, and this means that no interfering compounds are present in plasma. As to other drugs that are usually co-administered with irinotecan, the only one in our experience is paracetamol, which does not affect the emission of the imprinted nanoparticles when preliminarily tested at 1 μM. 4. Conclusion In conclusion, we have prepared a set of MIPs that can rebind irinotecan with good sensitivity. The imprinted fluorescent nanomaterial can be prepared and purified in cheap way and in less than one week. The fluorescence change of the napthalimide-containing MIP upon rebinding of the analyte has allowed the detection of irinotecan in human plasma, at nanomolar levels, after simple treatment of plasma with acetonitrile and removal of the proteins. The proof of concept given is encouraging towards the development of a portable device with sensors based on fluorescent imprinted nanoparticles for the detection of irinotecan. The present format of the system is clearly not technologically developed up to the level required for a self-analysis carried out by the patient, and several steps are still required. The main one is the immobilisation of the sensing material on a solid support, coupled with a portable, small, fluorimeter and a flow system to prepare the sample. We are currently working on these points; however, we have shown here that an imprinted nanomaterial able to change its optical properties on recognising irinotecan can be conveniently obtained in a simple way. In conclusion, we have prepared a set of MIPs that can rebind irinotecan with good sensitivity. The imprinted fluorescent nanomaterial can be prepared and purified in cheap way and in less than one week. The fluorescence change of the napthalimide-containing MIP upon rebinding of the analyte has allowed the detection of irinotecan in human plasma, at nanomolar levels, after simple treatment of plasma with acetonitrile and removal of the proteins. g y p p q y y p , and several steps are still required. The main one is the immobilisation of the sensing material on a solid support, coupled with a portable, small, fluorimeter and a flow system to prepare the sample. We are currently working on these points; however, we have shown here that an imprinted nanomaterial able to change its optical properties on recognising irinotecan can be conveniently Author Contributions: Conceptualisation, M.T., E.P., M.R., and F.B.; methodology, M.T., E.P., M.R., V.I., P.P., C.F., P.B., M.R., and F.B.; validation, all; formal analysis, M.T., E.P., G.T., M.R., and F.B.; investigation, M.T., E.P., E.M., V.I., P.P., and P.B.; resources: F.B., M.R., and G.T.; data curation, M.T., F.B., M.R., E.M., and C.F.; writing—original draft preparation, M.T., M.R., and F.B.; writing—review and editing, all; supervision, E.M., G.T., M.R., and F.B.; funding acquisition, G.T. All authors have read and agreed to the published version of the manuscript. Fluo i et y a d E aluatio i Hu a Pla a 3.3. Fluorimetry and Evaluation in Human Plasma The average accuracy of the calculated data is −0.6%. Although less challenging than a measure of recovery from authentic patient samples of known concentration before and after spiking (such samples are presently not available to us), this test shows nevertheless that the fluorescence data are very stable. As to the selectivity of the system, a first indication is given by the fact that, on moving from solvent to human plasma, no changes in the performance are observed. The titration curve in plasma is almost superimposable to that obtained in solvent, and this means that no interfering compounds are present in plasma. As to other drugs that are usually co-administered with irinotecan, the only one in our experience is paracetamol, which does not affect the emission of the imprinted nanoparticles when preliminarily tested at 1 µM. 12 of 15 12 of 15 Nanomaterials 2020, 10, 1707 Nanomaterials 2019, 9, x FOR Figure 7. Correlation between the concentration of irinotecan in plasma samples and the calculated values from Equation (3). Figure 7. Correlation between the concentration of irinotecan in plasma samples and the calculated values from Equation (3). Figure 7. Correlation between the concentration of irinotecan in plasma samples and the calculated values from Equation (3). Figure 7. Correlation between the concentration of irinotecan in plasma samples and the calculated values from Equation (3). References 1. Fukuoka, M. Current status of irinotecan in lung cancer. Oncology 2001, 15, 6–7. [PubMed] 2. Rodríguez Cáceres, M.I.; Durán-Merás, I.; Ornelas Soto, N.E.; López de Alba, P.L.; López Martínez, L. Spectrofluorimetric determination of irinotecan in the presence of oxidant and metal ions. Talanta 2008, 74, 1484–1491. [CrossRef] [PubMed] 2. Rodríguez Cáceres, M.I.; Durán-Merás, I.; Ornelas Soto, N.E.; López de Alba, P.L.; López Martínez, L. Spectrofluorimetric determination of irinotecan in the presence of oxidant and metal ions. Talanta 2008, 74, 1484–1491. [CrossRef] [PubMed] 3. Karadas, N.; Sanli, S.; Akmese, B.; Dogan-Topal, B.; Can, A.; Ozkan, S.A. Analytical application of polymethylene blue-multiwalled carbon nanotubes modified glassy carbon electrode on anticancer drug irinotecan and determination of its ionization constant value. Talanta 2013, 115, 911–919. [CrossRef] [PubMed] 3. Karadas, N.; Sanli, S.; Akmese, B.; Dogan-Topal, B.; Can, A.; Ozkan, S.A. Analytical application of polymethylene blue-multiwalled carbon nanotubes modified glassy carbon electrode on anticancer drug irinotecan and determination of its ionization constant value. Talanta 2013, 115, 911–919. [CrossRef] [PubMed] 4. Weekes, J.; Lam, A.K.Y.; Sebesan, S.; Ho, Y.H. Irinotecan therapy and molecular targets in colorectal cancer: A systemic review World J Gastroenterol 2009 15 3597–3602 [CrossRef] 3. Karadas, N.; Sanli, S.; Akmese, B.; Dogan-Topal, B.; Can, A.; Ozkan, S.A. Analytical application of polymethylene blue-multiwalled carbon nanotubes modified glassy carbon electrode on anticancer drug irinotecan and determination of its ionization constant value. Talanta 2013, 115, 911–919. [CrossRef] [PubMed] 4. Weekes, J.; Lam, A.K.Y.; Sebesan, S.; Ho, Y.H. Irinotecan therapy and molecular targets in colorectal cancer: A systemic review. World J. Gastroenterol. 2009, 15, 3597–3602. [CrossRef] 4. Weekes, J.; Lam, A.K.Y.; Sebesan, S.; Ho, Y.H. Irinotecan therapy and molecular targets in colorectal cancer: A systemic review. World J. Gastroenterol. 2009, 15, 3597–3602. [CrossRef] . Chabot, G.G. Clinical pharmacokinetics of irinotecan. Clin. Pharmacokinet. 1997, 33, 245–259. [CrossRef 6. Marangon, E.; Posocco, B.; Mazzega, E.; Toffoli, G. Development and validation of a High-Performance Liquid Chromatography–Tandem Mass Spectrometry method for the simultaneous determination of irinotecan and its main metabolites in human plasma and its application in a clinical pharmacokinetic study. PLoS ONE 2015, 10, e0118194. [CrossRef] 7. Alnaim, L. Therapeutic Drug Monitoring of cancer chemotherapy. J. Oncol. Pharm. Pract. 2007, 13, 207–221. [CrossRef] 8. Pearce, C.M.; Resmini, M. Towards point of care systems for the therapeutic drug monitoring of imatinib. Anal. Bioanal. Chem. 2020, 412, 5925–5933. [CrossRef] 9. The data a 4. Conclusions Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. The data a 4. Conclusions The proof of concept given is encouraging towards the development of a portable device with sensors based on fluorescent imprinted nanoparticles for the detection of irinotecan. The present format of the system is clearly ot te h olo i ally de elo ed u to the le el e ui ed fo a elf a aly i a ied out by the atie t Supplementary Materials: The following are available online at http://www.mdpi.com/2079-4991/10/9/1707/s1, Figure S1: HPLC calibration curve for irinotecan, used to measure residual irinotecan concentrations in rebinding tests. Slope 38.9204, intc. 68.5995, r2 0.9984, Figure S2: Fluorescence emission spectra of 250 nM irinotecan and of 1 M naphtlimide 5, Figure S3: Change of chemical shifts of protons 13 (compound 5) and 16 (compound 6) upon titration with irinotecan, Figure S4: Stern–Volmer plot for the fluorescence titration of MIP F with irinotecan, Figure S5: Quenching of the fluorescence emission of MIP F in the high irinotecan concentration range (3–25 M), Figure S6: Size distribution by number of MIP F, Figure S7: Size distribution by volume of MIP F, Figure S8: Size distribution by intensity of MIP F, Figure S9: Size distribution by number of NIP F, Figure S10: Size distribution by volume of NIP F, Figure S11: Size distribution by intensity of NIP F. g y p p q y y p , and several steps are still required. The main one is the immobilisation of the sensing material on a solid support, coupled with a portable, small, fluorimeter and a flow system to prepare the sample. We are currently working on these points; however, we have shown here that an imprinted nanomaterial able to change its optical properties on recognising irinotecan can be conveniently Author Contributions: Conceptualisation, M.T., E.P., M.R., and F.B.; methodology, M.T., E.P., M.R., V.I., P.P., C.F., P.B., M.R., and F.B.; validation, all; formal analysis, M.T., E.P., G.T., M.R., and F.B.; investigation, M.T., E.P., E.M., V.I., P.P., and P.B.; resources: F.B., M.R., and G.T.; data curation, M.T., F.B., M.R., E.M., and C.F.; writing—original draft preparation, M.T., M.R., and F.B.; writing—review and editing, all; supervision, E.M., G.T., M.R., and F.B.; funding acquisition, G.T. All authors have read and agreed to the published version of the manuscript. 13 of 15 Nanomaterials 2020, 10, 1707 Funding: This research was funded by the AIRC5x1000 grant 12214 “Application of Advanced Nanotechnology in the Development of Innovative Cancer Diagnostics Tools”. References Hahn, R.Z.; Arnhold, P.C.; Andriguetti, N.B.; Schneider, A.; Klück, H.M.; dos Reis, S.L.; Bastiani, M.F.; Kael, I.; Cezimbra da Silva, A.C.; Schwartsmann, G.; et al. Determination of irinotecan and its metabolite SN-38 in dried bloodspots using high-performance liquid-chromatography with fluorescence detection. J. Pharm. Biomed. Anal. 2018, 150, 51–58. [CrossRef] 10. Ragot, S.; Marquet, P.; Lachatre, F.; Rousseau, A.; Lacassie, E.; Gaulier, J.M.; Dupuy, J.L.; Lachatre, G. Sensitive determination of irinotecan (CPT-11) and its active metabolite SN-38 in human serum using liquid chromatography-electrospray mass spectrometry. J. Chromatogr. B 1999, 736, 175–184. [CrossRef] 11. Calandra, E.; Crotti, S.; Nitti, D.; Roverso, M.; Toffoli, G.; Marangon, E.; Posocco, B.; Traldi, P.; Agostini, M. The development of a matrix-assisted laser desorption/ionization (MALDI)-based analytical method for determination of irinotecan levels in human plasma: Preliminary results. J. Mass Spectr. 2015, 50, 959–962. [CrossRef] [PubMed] 12. Vlatakis, G.; Andersson, L.I.; Müller, R.; Mosbach, K. Drug Assay using antibody mimics made by molecular imprinting. Nature 1993, 361, 645–647. [CrossRef] [PubMed] 13. Roy, B.; Vo Duy, S.; Puy, J.I.; Martin, C.; Guitton, J.; Dumontet, C.; Périgaud, C.; Lefebvre-Tournier, I. Synthesis and evaluation of a molecularly imprinted polymer for selective solid-phase extraction of irinotecan from human serum samples. J. Funct. Biomater. 2012, 3, 131–142. [CrossRef] [PubMed] 14. Xue, J.Q.; Li, D.W.; Qu, L.L.; Long, Y.T. Surface-imprinted core-shell Au nanoparticles for selective detection of bisphenol A based on surface-enhanced Raman scattering. Anal. Chim. Acta 2013, 777, 57–62. [CrossRef] 14. Xue, J.Q.; Li, D.W.; Qu, L.L.; Long, Y.T. Surface-imprinted core-shell Au nanoparticles for selective detection of bisphenol A based on surface-enhanced Raman scattering. Anal. Chim. Acta 2013, 777, 57–62. [CrossRef] 15. Ciardelli, G.; Cioni, B.; Cristallini, C. Acrylic polymeric nanospheres for the release and recognition of 14. Xue, J.Q.; Li, D.W.; Qu, L.L.; Long, Y.T. Surface imprinted core shell Au nanoparticles for selective detection of bisphenol A based on surface-enhanced Raman scattering. Anal. Chim. Acta 2013, 777, 57–62. [CrossRef] 15. Ciardelli, G.; Cioni, B.; Cristallini, C. Acrylic polymeric nanospheres for the release and recognition of molecules of clinical interest. Biosens. Bioelectron. 2004, 20, 1083–1090. [CrossRef] 15. Ciardelli, G.; Cioni, B.; Cristallini, C. Acrylic polymeric nanospheres for the release and recognition of molecules of clinical interest. Biosens. Bioelectron. 2004, 20, 1083–1090. [CrossRef] 16. Pasetto, P.; Maddock, S.C.; Resmini, M. Synthesis and characterization of molecularly imprinted catalytic microgels for carbonate hydrolysis. Anal. Chim. Acta 2005, 542, 66–75. [CrossRef] 16. References Pasetto, P.; Maddock, S.C.; Resmini, M. Synthesis and characterization of molecularly imprinted catalytic microgels for carbonate hydrolysis. Anal. Chim. Acta 2005, 542, 66–75. [CrossRef] 17. Flavin, K.; Resmini, M. Imprinted nanomaterials: A new class of synthetic receptors. Anal. Bioanal. Chem. 2009, 393, 437–444. [CrossRef] 17. Flavin, K.; Resmini, M. Imprinted nanomaterials: A new class of synthetic receptors. Anal. Bioanal. Chem. 2009, 393, 437–444. [CrossRef] 18. Liu, H.; Hong, Y.; Chen, L. Molecularly imprinted polymers coated on carbon nanotubes for matrix solid phase dispersion extraction of camptothecin from Camptotheca acuminate. Anal. Methods 2015, 7, 8100–8108. [CrossRef] 18. Liu, H.; Hong, Y.; Chen, L. Molecularly imprinted polymers coated on carbon nanotubes for matrix solid phase dispersion extraction of camptothecin from Camptotheca acuminate. Anal. Methods 2015, 7, 8100–8108. [CrossRef] 14 of 15 Nanomaterials 2020, 10, 1707 19. Pellizzoni, E.; Tommasini, M.; Marangon, E.; Rizzolio, F.; Saito, G.; Benedetti, F.; Toffoli, G.; Resmini, M.; Berti, F. Fluorescent molecularly imprinted nanogels for the detection of anticancer drugs in human plasma. Biosens. Bioelectron. 2016, 86, 913–919. [CrossRef] Lakowicz, J.R. Principles of Fluorescence Spectroscopy, 3rd ed.; Springer: Cham, Switzerland, 2006 ISBN 13: 978-0387-31278-1. 21. May, B.; Poteau, X.; Yuan, D.; Brown, R.G. A study of a highly efficient resonance energy transfer between 7-N,N-diethylamino-4-methylcoumarin and 9-butyl-4-butylamino-1,8-naphthalimide. Dyes Pigm. 1999, 42, 79–84. [CrossRef] 22. De Bruijn, P.; Verweij, J.; Loos, W.J.; Nooter, K.; Stoter, G.; Sparreboom, A. Determination of irinotecan (CPT-11) and its active metabolite SN-38 in human plasma by reversed-phase high-performance liquid chromatography with fluorescence detection. J. Chromatogr. B 1997, 698, 277–285. [CrossRef] 23. Sai, K.; Kaniwa, N.; Ozawa, S.; Sawada, J.I. An analytical method for irinotecan (CPT-11) and its metabolites using a high-performance liquid chromatography: Parallel detection with fluorescence and mass spectrometry. Biomed. Chrom. 2002, 16, 209–218. [CrossRef] [PubMed] 24. Poujol, S.; Inguet, F.; Malosse, F.; Astre, C.; Ychou, M.; Culine, S.; Bressolle, F. Sensitive HPLC-fluorescence method for irinotecan and four major metabolites in human plasma and saliva: Application to pharmacokinetic studies. Clin. Chem. 2003, 49, 1900–1908. [CrossRef] [PubMed] 25. Alexiou, M.S.; Tychopoulos, V.; Ghorbanian, S.; Tyman, J.H.P.; Brown, R.G.; Brittain, P. The UV-Visible absorption and fluorescence of some substituted 1,8-Naphthalimides and naphthalic anhydrides. J. Chem. Soc. Perkin Trans. 1990, 2, 837–842. [CrossRef] 26. Ton, X.A.; Acha, V.; Bonomi, P.; Tse Sum Bui, B.; Haupt, K. A disposable evanescent wave fiber optic sensor coated with a Molecularly imprinted polymer as a selective fluorescence probe. Biosens. Bioelectron. 39. Hassan, P.A.; Rana, S.; Verma, G. Making Sense of Brownian Motion: Colloid Characterization by Dynamic Light Scattering. Langmuir 2015, 31, 3–12. [CrossRef] 40. Stetefeld, J.; McKenna, S.A.; Patel, T.R. Dynamic light scattering: A practical guide and applications in biomedical sciences. Biophys. Rev. 2016, 8, 409–427. [CrossRef] © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). References 2015, 64, 359–366. [CrossRef] 27. Wagner, W.R.; Wan, M.; Biyikal, E.; Benito-Peña; Moreno-Bondi, M.C.; Lazraq, I.; Rurack, K.; Sellergren, B. Synthesis, spectroscopic, and analyte-responsive behavior of a polymerizable naphthalimide-based carboxylate probe and molecularly imprinted polymers prepared thereof. J. Org. Chem. 2013, 784, 1377–1389. [CrossRef] 28. Ton, X.A.M.; Tse Sum Bui, B.; Resmini, M.; Bonomi, P.; Dika, I.; Soppera, O.; Haupt, K. A Versatile fiber-optic fluorescence sensor based on molecularly imprinted microstructures polymerized in situ. Angew. Chem. Int. Ed. 2013, 52, 8317–8321. [CrossRef] 29. Rouhani, S.; Nahavandifard, F. Molecular imprinting-based fluorescent optosensor using a polymerizable 1,8-naphthalimide dye as a florescence functional monomer. Sens. Act. B 2014, 197, 185–192. [CrossRef] 30. Saito, G.; Velluto, D.; Resmini, M. Synthesis of 1,8-naphthalimide-based probes with fluorescent switch triggered by flufenamic acid. R. Soc. Open Sci. 2018, 5172137. [CrossRef] 31. Dato Paduka, A.H.; Kruger, P.E.; Gunnlaugsson, T. Colorimetric ‘naked-eye’ and fluorescent sensors for anions based on amidourea functionalised 1,8-naphthalimide structures: Anion recognition via either deprotonation or hydrogen bonding in DMSO. New J. Chem. 2008, 32, 1153–1161. 32. Bojinov, V.; Konstantinova, T. Synthesis of polymerizable 1,8-naphtalimide dyes containing hindered amine fragment. Dyes Pigm. 2002, 54, 239–245. [CrossRef] 33. Bardajee, G.R. Microwave-assisted solvent-free synthesis of fluorescent naphthalimide dyes. Dyes Pigm. 2013, 99, 52–58. [CrossRef] 34. Zhang, Y.; Feng, S.; Wu, Q.; Wang, K.; Yi, X.; Wang, H.; Pan, Y. Microwave-assisted synthesis and evaluation of naphthalimides derivatives as free radical scavengers. Med. Chem. Res. 2011, 20, 752–759. [CrossRef] 35. Wu, Q.; Qin, W. Solvent-Free Synthesis of 1,8-Naphthalimide Derivatives Under Microwaves Irradiation. Asian J. Chem. 2011, 23, 4713–4714. 36. Graham, N.B.; Cameron, A. Nanogels and microgels: The new polymeric materials playground. Pure Appl. Chem. 1998, 70, 1271–1275. [CrossRef] 37. Liu, P.; Pearce, C.M.; Anastasiadi, R.-M.; Resmini, M.; Castilla, A.M. Covalently Crosslinked Nanogels: An NMR Study of the Effect of Monomer Reactivity on Composition and Structure. Polymers 2019, 11, 353. [CrossRef] 38. Biffis, A.; Graham, N.B.; Siedlaczek, G.; Stalberg, S.; Wulff, G. The Synthesis, Characterization and Molecular Recognition Properties of Imprinted Microgels. Macromol. Chem. Phys. 2001, 202, 163–171. [CrossRef] 15 of 15 Nanomaterials 2020, 10, 1707 © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
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Interactions Increase Forager Availability and Activity in Harvester Ants
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RESEARCH ARTICLE Data Availability Statement: All relevant data are within the paper and its Supporting Information files. Data Availability Statement: All relevant data are within the paper and its Supporting Information files. Funding: Field work for EP in 2012 was funded by a Stanford UAR Student Small Grant, and field work for JQ in 2013 was funded by a Stanford UAR Student Major Grant (https://undergrad.stanford.edu/ opportunities/research/get-funded/apply-student- grants/grant-types). Other expenses were funded by the grant DMG received from the National Institutes of Health (grant number R01GM105024, http://www. nih.gov/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. OPEN ACCESS Citation: Pless E, Queirolo J, Pinter-Wollman N, Crow S, Allen K, Mathur MB, et al. (2015) Interactions Increase Forager Availability and Activity in Harvester Ants. PLoS ONE 10(11): e0141971. doi:10.1371/ journal.pone.0141971 Evlyn Pless1☯¤a*, Jovel Queirolo1☯¤b, Noa Pinter-Wollman2, Sam Crow3, Kelsey Allen4, Maya B. Mathur5, Deborah M. Gordon1 1 Department of Biology, Stanford University, Stanford, California, United States of America, 2 BioCircuits Institute, University of California, San Diego, La Jolla, California, United States of America, 3 Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America, 4 Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, 5 Quantitative Sciences Unit, Stanford University, Stanford, California, United States of America a1111 ☯These authors contributed equally to this work. ¤a Current address: Department of Ecology and Evolution, Yale University, New Haven, Connecticut, United States of America ¤b Current address: Stanford Teacher Education Program, Stanford University, Stanford, California, United States of America * evlyn.pless@yale.edu ☯These authors contributed equally to this work. ¤a Current address: Department of Ecology and Evolution, Yale University, New Haven, Connecticut, United States of America ¤b Current address: Stanford Teacher Education Program, Stanford University, Stanford, California, United States of America * evlyn.pless@yale.edu ☯These authors contributed equally to this work. ¤a Current address: Department of Ecology and Evolution, Yale University, New Haven, Connecticut, United States of America ¤b Current address: Stanford Teacher Education Program, Stanford University, Stanford, California, United States of America * evlyn.pless@yale.edu ¤a Current address: Department of Ecology and Evolution, Yale University, New Haven, Connecticut, United States of America ¤b Current address: Stanford Teacher Education Program, Stanford University, Stanford, California, United States of America * l l @ l d Abstract Social insect colonies use interactions among workers to regulate collective behavior. Har- vester ant foragers interact in a chamber just inside the nest entrance, here called the 'entrance chamber'. Previous studies of the activation of foragers in red harvester ants show that an outgoing forager inside the nest experiences an increase in brief antennal con- tacts before it leaves the nest to forage. Here we compare the interaction rate experienced by foragers that left the nest and ants that did not. We found that ants in the entrance cham- ber that leave the nest to forage experienced more interactions than ants that descend to the deeper nest without foraging. Additionally, we found that the availability of foragers in the entrance chamber is associated with the rate of forager return. An increase in the rate of forager return leads to an increase in the rate at which ants descend to the deeper nest, which then stimulates more ants to ascend into the entrance chamber. Thus a higher rate of forager return leads to more available foragers in the entrance chamber. The highest den- sity of interactions occurs near the nest entrance and the entrances of the tunnels from the entrance chamber to the deeper nest. Local interactions with returning foragers regulate both the activation of waiting foragers and the number of foragers available to be activated. Editor: Nicolas Chaline, Universidade de São paulo, BRAZIL Received: June 4, 2015 Accepted: October 15, 2015 Published: November 5, 2015 Copyright: © 2015 Pless et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Interactions Increase Forager Availability and Activity in Harvester Ants Evlyn Pless1☯¤a*, Jovel Queirolo1☯¤b, Noa Pinter-Wollman2, Sam Crow3, Kelsey Allen4, Maya B. Mathur5, Deborah M. Gordon1 Interactions Regulate Foraging in Harvester Ants [2,3]. Social insect colonies offer a compelling example of collective behavior, as they operate without any central control [4]. Competing Interests: The authors have declared that no competing interests exist. In social insect colonies, individual workers use local interactions to perform and regulate collective behavior [4,5], such as nest construction [6,7], nest relocation [8,9,10], and foraging [11,12,13,14,15]. Many studies suggest that wasps, honeybees, and ants all use interaction rate to activate foraging [14,15, 16, 17]. In wasps, foragers may be activated by the biting of incom- ing foragers and other nestmates, and foragers are bitten more frequently than other wasps [14]. In honeybees, forager arrival and interactions inside the hive [15], such as the waggle dance [18] and vibration signals [19], are associated with an increase in outgoing foraging [15,19], while another 'stop signal’ may counter the waggle dance [18]. Local encounters also play an important role for the organization of foraging in ants, for exam- ple to respond to the intensity of crowding [20,21,22]. Ants appear to use the rate of antennal con- tact as an indication of local density [23,24,25] and adjust recruitment and trail networks accordingly [20,21,22]. For example, Lasius niger ants downregulate the production of recruitment signals [22] and bifurcate their trail during crowding to maintain a high rate of food return [20]. It appears that interactions also regulate the availability of foragers. For example, interac- tions among honeybees affect hormonal factors that determine the onset of foraging and there- fore the number of bees available to forage [26]. Depleting a colony of the older foragers induces an early onset of foraging in younger bees [26]. Removal experiments in ants also sug- gest that the availability of foragers depends on interactions, because the removal of foragers leads other ants to switch tasks and become foragers [27, 28]. Red harvester ants (Pogonomyrmex barbatus) use interaction rates to decide which task to perform, including whether and when to forage [12,13,29]. Interactions between harvester ants are tactile and chemical and take the form of brief antennal contacts [30,31]. During an anten- nal contact, one ant assesses the cuticular hydrocarbon profile of the other, which reveals an ant’s task and whether it is carrying food [30,31,32]. Foraging poses trade-offs for seed-eating ants in the desert. Ants must spend water to gain water because foraging in the desert heat can lead to desiccation, and they obtain some water by metabolizing the fats in the seeds they col- lect [33,34]. In addition, colonies compete with their neighbors for foraging area [35,36]. How well a colony manages these trade-offs influences its reproductive success [37]. In harvester ants, returning foragers come into the nest entrance through a tunnel and into a chamber just inside the entrance that we call the 'entrance chamber' (Fig 1). In previous work we referred to the 'vestibule' as the area just inside the nest entrance [13], but in this study we excavated more deeply to observe ants in the full chamber at the end of the entrance tunnel. Foragers deposit the food they collected in this chamber or carry it down tunnels leading from the entrance chamber to the deeper nest. The sizes and shapes of tunnels and chambers vary among colonies, and these differences probably influence the rate and location of interactions. Nest structure affects ant movement [38], which affects the rate of interaction [39,40]. In turn, rate of interaction can influence traffic flow [41,42]. Here we consider three questions about the regulation of foraging through interaction rate in harvester ants: Introduction A fundamental question in the study of animal behavior and other networks is how simple individual behaviors add up to complex collective behaviors [1]. Distributed networks, includ- ing those found in natural populations, are regulated using feedback based on local interactions 1 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Question 1: Do outgoing foragers experience a different interaction rate from other ants? Studies on harvester ants have shown that interactions with successful returning foragers stim- ulate foraging activity [12,43]. The chemical odors of both a returning forager and the seed it is carrying are required in combination to stimulate foraging [32]. A previous study showed that outgoing foragers experience a substantial increase in interactions 3–8 seconds before they 2 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 1. Diagram of the entrance chamber. A schematic vertical cross section of a typical P. barbatus ant nest. The solid line indicates the ground surface, and the dashed line indicates where a horizontal section was made to observe activity inside the nest. Interactions occur in the entrance chamber, connected to the outside by the entrance tunnel, with tunnels leading to the deeper nest. Fig 1. Diagram of the entrance chamber. A schematic vertical cross section of a typical P. barbatus ant nest. The solid line indicates the ground surface, and the dashed line indicates where a horizontal section was made to observe activity inside the nest. Interactions occur in the entrance chamber, connected to the outside by the entrance tunnel, with tunnels leading to the deeper nest. doi:10.1371/journal.pone.0141971.g001 doi:10.1371/journal.pone.0141971.g001 choose to leave the nest [13]. However, this study examined the interaction rates only of the foragers that left the nest. Here we test whether ants that left the nest to forage experienced a higher interaction rate than ants that did not leave the nest to forage and instead descended from the entrance chamber to the deeper nest without foraging. Question 2: What regulates the number of outgoing foragers available in the entrance chamber? Previous work on harvester ants shows that while foragers inside the nest respond to interac- tions within seconds, the pool of ants available to become foragers is regulated on the order of minutes [13]. Inhibiting forager return for more than four minutes leads to a decrease in the number of foragers inside the nest entrance that are available to forage (S1 Movie) [13]. Here we examine how the rate of returning foragers regulates the number of ants in the entrance chamber available to forage. We hypothesized that the descent into the deeper nest of returning foragers, or other ants transporting food within the nest, influences the rate at which ants ascend from the deeper nest to the entrance chamber to become available to forage. We manipulated the rate of forager return to determine the effect on the rate at which ants ascend from the deeper nest, and return to the deeper nest, thus regulating the numbers in the entrance chamber available to forage. Question 3: What determines the spatial distribution of interactions? Previous work shows that an ant’s interaction frequency depends on its path shape and loca- tion [35,38,39,40,41,42,44,45]. By influencing interactions, the shape and size of the entrance chamber, which varies among colonies, probably affects the regulation of foraging in harvester ants. Previous studies show that most interactions occur at the entrances of the tunnels from the entrance chamber to the deeper nest [13]. We asked how manipulating the rate of incoming foragers would change the spatial distribution and frequency of interactions in the nest. Interactions Regulate Foraging in Harvester Ants site is owned by Stanford University, and no permission was required to work on the site. This study did not involve any endangered or protected species. Nests of P. barbatus have an entrance approximately 2cm in diameter, which leads to one or more entrance tunnels approximately 5cm long. The entrance tunnels lead into an entrance chamber approximately 8cm wide, and from this chamber, tunnels descend into the deeper nest (Fig 1). To observe interactions inside the entrance chamber, we excavated the soil above the entrance chamber, as in Pinter-Wollman et al. [13]. We positioned a rectangular piece of ply- wood (23cm x 28cm) such that one of the short edges of the wood was directly over the nest entrance. The rest of the wood was positioned over the entrance tunnel and entrance chamber. We drew an outline around the wood, removed the wood, and dug out approximately 4cm of soil from the rectangular area for all films made in 2012 and approximately 9cm of soil for films made in 2013. The area exposed in 2012 corresponds to the area inside the nest entrance described as the 'vestibule' in Pinter-Wollman et al. [13]. The area we exposed in the 2013 observations described here included more of the entrance chamber than in 2012. Here we refer to both as the 'entrance chamber'. We covered the area with the wood overnight so that the ants would acclimate to their new nest ceiling. Each morning between 6am and 11am, we removed the wood and covered the excavated area with a rectangular glass sheet (23cm x 28cm) for filming (Fig 2). Previous studies show that the incoming light does not disturb the ants [13]. In 2012 we filmed three colonies for three consecutive days, and in 2013 we filmed six colo- nies over a period of 10 days (S1 Table). We converted the films into JPEGs (30 frames/second) using Adobe Premiere Elements 7.0 in 2012 and Java software that we developed in 2013. We observed the films of ants in the entrance chamber, which included all area covered by the glass sheet and all area immediately around the glass window which was depressed at the same level as the rest of the ant chamber. When observing the films for each of our analyses, we used the following definitions for cat- egorizing ant activities: 1. PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Materials and Methods Data were collected over the course of one week in August 2012 and two weeks in August 2013 at the site of a long-term study in Rodeo, New Mexico [37]. Prof. Gordon’s long-term study 3 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Outgoing foragers: ants that leave the entrance chamber and go outside not carrying anything 2. Returning foragers: ants that come from outside of the nest and enter the nest (Observations were made at a time when most ants outside the nest were foragers, but it is possible that some of the ants considered to be returning foragers were ants of another task that did not carry a food item.) 3. Descending ants: ants that were first observed in the entrance chamber and go down a tun- nel into the deeper nest 4. Ascending ants: ants that were in the deeper nest, come up a tunnel, and emerge into the entrance chamber 5. Nest maintenance workers: ants carrying dirt or debris inside the nest To test whether outgoing foragers experience a different interaction rate from other ants (Question 1), we made 3 sets of measurements from the films made in 2012. First, we deter- mined what percentage of the ants that ascended from the deeper nest into the entrance cham- ber (‘ascending ants’) later performed each of the following: outgoing foraging, descending into the deeper nest, or nest maintenance. The focal ants for this analysis were chosen by selecting the first ant to emerge from the deeper nest at five-second intervals. Second, we observed out- going foragers and recorded the time and location of all their interactions, in the form of brief 4 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 2. Labeled entrance chamber. A photograph of the entrance chamber of colony N_4 covered with the window used during filming. The tunnels to the deeper nest are labeled, as is the trail of returning and outgoing foragers. d i 10 1371/j l 0141971 002 Fig 2. Labeled entrance chamber. A photograph of the entrance chamber of colony N_4 covered with the window deeper nest are labeled, as is the trail of returning and outgoing foragers. Fig 2. Labeled entrance chamber. A photograph of the entrance chamber of colony N_4 covered with the window used during filming. The tunnels to the deeper nest are labeled, as is the trail of returning and outgoing foragers. doi:10.1371/journal.pone.0141971.g002 doi:10.1371/journal.pone.0141971.g002 doi:10.1371/journal.pone.0141971.g002 antennal contacts, before leaving the entrance chamber. Third, we recorded the time and loca- tions of the interactions of descending ants. PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 3. Comparison of activity distribution by colony. Each bar shows the mean proportion of ascending ants that foraged (black), did nest maintenance (white), or ascended into the nest entrance but then descended back into the deeper nest without leaving the nest to forage (grey), over the course of three days. Error bars show standard errors of the mean. Fig 3. Comparison of activity distribution by colony. Each bar shows the mean proportion of ascending ants that foraged (black), did nest maintenance (white), or ascended into the nest entrance but then descended back into the deeper nest without leaving the nest to forage (grey), over the course of three days. Error bars show standard errors of the mean. doi:10.1371/journal.pone.0141971.g003 obstruction, and ants that did not perform any of the indicated behavior until the end of the film were excluded from analysis. Out of 147 possible focal ants per colony (pooled over the three days), 16 were excluded from the analysis of N_2, 21 from the analysis of N_4, and 9 from the analysis of N_13 (S1 Dataset). To record the interactions of outgoing foraging and descending ants, we analyzed the JPEGs from the films using a custom written MATLAB script as in Pinter-Wollman et al. [13] (code provided in S1 Appendix). We observed ten outgoing foragers and four or five descending ants per film, the first foraging and descending ants in the film segment that were clearly visible, from when the ant entered the entrance chamber from the deeper nest to when she either left the entrance chamber or descended to the deeper nest. (Five descending ants were selected for each film except for the film of N_2 on August 15th, which showed only four descending ants.) We recorded the time each ant entered and left the entrance chamber, and the time and loca- tion of each interaction of the focal ant. Interactions were recorded when the focal ant made antennal contact with the head or body of another ant, and the location of the interaction was defined as the point in between the head of the first ant and the place of contact on the second ant. Our analysis did not examine interactions with other outgoing foragers, because previous work showed that only successful returning foragers stimulated foraging [43]. The first clearly visible foraging and descending ants from each video were chosen as the focal ants for the second and third analyses. To determine the sample size of outgoing foragers, we considered the possibility that if the proportion of foragers were extremely different in the three colonies observed, a given sample size would not be equally representative in all three colonies. We found that the proportions foraging in the three colonies were not significantly different (ANOVA, F2,6 = 3.854; p = 0.08) (Fig 3) (S1 Dataset). Therefore, we decided to measure interaction rates in the same number of foragers and descending ants in all three colonies, rather than choose different sample sizes for each colony. To determine what percentage of the ants that ascended from the deeper nest into the entrance chamber were outgoing foragers, descending ants, or nest maintenance workers within our 5–7 minutes of film, we observed randomly selected ants in each of the nine films (three per colony for three colonies taken over the course of three days, S1 Table). Every five seconds for the first four minutes of film, the first ant to ascend from the entrance tunnel was tracked until it left the nest, performed nest maintenance by moving dirt or debris around the nest entrance, or descended to the deeper nest. Ants that were lost from view due to glare or an 5 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 3. rates of ascending ants and descending ants 3. rates of ascending ants and descending ants We tested for cross-correlations in each of the three combinations of variables listed above, to determine whether the two variables tended to be correlated in time, and if so, with what lag. For example, if an ant in the entrance chamber often descended to the deeper nest 10 seconds after a returning forager came in, then there would be a positive correlation at a lag of 10 sec- onds in the rates of returning foragers and descending ants. To normalize each time series for differences in numbers of ants, we subtracted from each point the moving average of each time series using a time window that was half the duration of each film (S2 Table). The timescale of the smoothing window was minutes (median 7 minutes), whereas observed lags were on the order of seconds (median ~15 seconds), and thus the results were probably not affected by this normalization procedure. To identify significant cross-correlations, indicating a time dependence for two rates, we calculated the likelihood of a correlation for each possible lag time, relative to the null hypothe- sis of no time dependence. We report lag times that were statistically significant at p < 0.01. In addition, we ran 1000 simulations in which the time of each event (ant returning, ascending, or descending) was randomly assigned from a uniform distribution covering the average length of the videos. We then compared the proportion of significant cross correlations in the simulated data with that proportion in the observed data. A smaller proportion of significant events in the simulated data compared with the observed indicates that the observed correlations were not found by chance. We next investigated the spatial distribution of interactions (Question 3). Using Java software we developed, we split the films into JPEG frames (at 30 frames per sec- ond) and marked the location in the entrance chamber of each interaction of the ants we tracked. The locations of interactions were recorded in two instantaneous images, one at the start of the removal of returning foragers, and the other immediately after forager removals ended 3–5 minutes later. To illustrate the spatial pattern of interactions, we used a 2D Gaussian kernel density esti- mator in R package MASS to produce 13 pairs of utilization distribution maps for the 13 trials with forager removals [46]. Interactions Regulate Foraging in Harvester Ants activity was a fixed effect with colony and day as random effects with normally distributed error terms. To investigate what regulates the number of outgoing foragers available in the entrance chamber (Question 2), we filmed the entrance chamber in the morning when the ants were for- aging and relatively undisturbed for about 6 minutes in 2013 (S1 Table). To test how changes in the rate of forager return influence the rate at which ants ascend into and descend from the entrance chamber, we manipulated forager return rate. Returning foragers were removed for 3–5 minutes (depending on the amount of time needed to collect most of the returning forag- ers) and kept in a plastic box (and returned to the nest after observations were completed), as in Gordon et al. [12]. We observed and filmed behavior inside the nest during and after forager removals. We performed removal experiments in 13 out of the 16 trials (S1 Table). We counted from the films the numbers of returning and outgoing foragers at the nest entrance and the number of ascending and descending ants at all tunnel entrances. We used MATLAB to test for cross-correlations (p < 0.01) among: 1. rates of returning foragers and ascending ants 2. rates of returning foragers and descending ants PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 An outgoing for- ager was identified as an ant that moved directly toward the outside of the nest and immedi- ately left the nest as soon as it reached the edge of the entrance chamber. We used a linear multilevel model with normal errors, fit via REML using R’s lme4 package, to determine if the rate of interactions and time spent in the entrance chamber differed between outgoing foragers and descending ants [46]. To account for colony and day effects, ant 6 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 1. Interaction rates of outgoing foragers The mean (±SD) time outgoing foragers were tracked was 7.51 (±7.43) seconds (range 0.401 to 36.6) and the mean time descending ants were tracked was 16.0 (±10.8) seconds (range 2.91 to 47.6). Although sampling times varied widely, the distribution was similar across each colony (S1 Fig). The mean (±SD) interaction rate for outgoing foragers was 1.47 (±1.09) interactions per sec- ond, while the mean interaction rate for descending ants was 0.83 (±0.587) interactions per sec- ond (S2 Dataset). Taking into account differences in colony- and day-specific interaction rates, the interaction rates of foragers were significantly higher than those of descending ants (linear multilevel model, b = 0.64; 95% CI: 0.33, 0.95; p < 0.001). (The coefficient (b) represents the model-based estimate for the increase in interaction rate between foragers and descending ants.) Foragers also spent a shorter time in the entrance chamber than ants that eventually descended to the deeper nest (linear multilevel model with normal errors, b = -8.55; 95% CI: 11.65, -5.44; p<0.001). For illustrative purposes, interaction rates and time in the entrance chamber by colony (pooling across all three days) are shown in Fig 4. The three colonies differed in the interaction rates of outgoing foragers (ANOVA, F2,27 = 8.42; p = 0.0004) and descending ants (ANOVA, F2,11 = 4.83; p = 0.0002), and all differed in pairwise tests except colonies N_2 and N_13 (N_2 vs N_13 Tukey multiple comparison of means, p = 0.622 for outgoing foragers, p = 0.92 for descending). The three days also differed in the interaction rates of outgoing foragers (ANOVA, F2,27 = 5.64; p = 0.005) and descending ants (ANOVA, F2,11 = 12.21; p <0.0001), due to a difference between August 13 and August 14 (Tukey multiple comparisons of means, p = 0.0033 for outgoing foragers, p < 0.0001 for descending ants). Within the 5–7 minutes of each of our films, the proportion of ascending ants that left the nest ranged from 0.31–0.89, (mean (±SD) 0.59 (±0.18)) (Fig 3) (S1 Dataset). The proportion of ascending ants that performed nest maintenance, carrying soil or debris out of or around the nest, ranged from 0.00–0.083 (mean (±SD) 0.067 (±0.048)), and the proportion that returned to the deeper nest ranged from 0.056–0.65 (mean (±SD) 0.34 (±0.19)) (Fig 3). 1. Interaction rates of outgoing foragers In all colonies and days, significantly more ascending ants left the nest (Student’s t-test, p<0.0001) or returned to the deeper nest (Student’s t-test, p = 0.0036) than did nest maintenance. In seven of the nine colonies and days, more ants left the nest than returned to the deeper nest without foraging. 3. rates of ascending ants and descending ants These maps show the spatial density of interactions in the entrance chamber at the start and at the end of the forager removals. 7 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 2. Availability of foragers in entrance chamber There was evidence of time-dependence among the rates at which ants returned to the nest, ascended from the deeper nest to the entrance chamber, and descended from the entrance chamber to the deeper nest (S3 Dataset). We found significant cross-correlations between the rates of returning foragers and ascending ants, returning foragers and descending ants, and ascending ants and descending ants in some of the trials, when removals were performed, for each of the 3 colonies. (Table 1; Cross-correlation, p < 0.01). The cross-correlation between rates of returning foragers and ascending ants was significant in one out of three trials for col- ony 367 and one out of two trials for colony 229 (2/5 trials) (Table 1). The cross-correlation between rates of returning foragers and descending ants was significant in one out of three tri- als for colony N_5, two out of three trials for colony 367, one out of one trial for colony 25, and one out of one trials for colony 242 (5/7 trials) (Table 1). The cross-correlation between rates of ascending ants and descending ants was significant in two out of three trials for colony N_5, 8 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Table 1. Lag times found after removals were performed. The lag values in seconds between returning foragers and ascending ants, returning foragers and descending ants, and ascending ants and descending ants. Mean and standard deviation across all colonies and days also shown. For cross-correla- tions in which more than one lag time was detected, all significant lags are reported. A “—” indicates that no significant lags were found. Colony name Date filmed Lag times between returning foragers and ascending (seconds) Lag times between returning foragers and descending ants (seconds) Lag times between ascending and descending ants (seconds) N_5 8-17- 2013 - 13 - N_5 8-18- 2013 - - 5 N_5 8-20- 2013 - - 30, 68 367 8-18- 2013 - 6, 26 - 367 8-20- 2013 11, 61 2, 17, 45 13, 29, 69 367 8-21- 2013 - - - 868 8-19- 2013 - - 43 868 8-20- 2013 - - 4 868 8-21- 2013 - - - 25 8-24- 2013 - 22 - 229 8-24- 2013 - - - 229 8-26- 2013 58 - 62, 68 242 8-25- 2013 - 13 - Mean 43.33 18 39.1 Standard Deviation 28.04 13.42 26.59 doi:10.1371/journal.pone.0141971.t001 cross-correlations: colony 367 on August 20, 2013. There were two statistically significant lag times found between the returning foragers and ascending ants, three for returning foragers and descending ants, and three for ascending ants and descending ants. Fig 5 shows all the sta- tistically significant cross correlations from this trial. The rate at which ants descended into the deeper nest depended significantly on the rate of returning foragers. Of the three relationships considered, the shortest lag time was between for- agers returning and ants descending into the deeper nest. The mean (±SD) lag, 18.00 (±13.42) seconds, between returning foragers and descending ants was significantly shorter than the lag between ascending ants and descending ants, 39.10 (±26.59) seconds (Student’s t-test, p = 0.048) (Fig 6). It was also significantly shorter than the lag between returning foragers and ascending ants, 43.33 (±28.04) seconds (Student’s t-test, p = 0.032) (Fig 6). Some colonies showed significant lag times between more than one of the tested relationships, while other col- onies had only one (Table 1). Interactions Regulate Foraging in Harvester Ants Fig 4. Comparison of interaction rate and time in entrance chamber in outgoing foragers and descending ants. A) Each bar shows the mean brief antennal contacts, in interactions per second, of ants in the entrance chamber. B) Each bar shows the mean time in seconds that ants spent in entrance chamber. Black: ants that subsequently left the nest to forage (outgoing foragers); White: ants that descended from the entrance chamber deeper nest (descending ants). Error bars show standard errors of the mean. doi:10.1371/journal.pone.0141971.g004 Fig 4. Comparison of interaction rate and time in entrance chamber in outgoing foragers and descending ants. A) Each bar shows the mean rate of brief antennal contacts, in interactions per second, of ants in the entrance chamber. B) Each bar shows the mean time in seconds that ants spent in the entrance chamber. Black: ants that subsequently left the nest to forage (outgoing foragers); White: ants that descended from the entrance chamber to the deeper nest (descending ants). Error bars show standard errors of the mean. doi:10.1371/journal.pone.0141971.g004 one out of three trials for colony 367, two out of three trials for colony 868, and one out of two trials for colony 229 (9/11 trials) (Table 1). The simulations in which ascending, descending, and returning ant times were chosen from a uniform distribution produced only 76/1000 sig- nificant cross correlations, a smaller proportion than any of the observed cross correlations (0.076 for the randomization simulations compared with 0.4, 0.71, and 0.82 for the observed data). There was one removal trial that produced statistically significant lag times for all three PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 9 / 18 doi:10.1371/journal.pone.0141971.t001 3. Spatial distribution of interactions Considering each of the thirteen films individually, eight films showed significantly fewer interactions after removals than before removals: colony 367 on 8- 20-13 and 8-21-13, colony 868 on 8-19-13 and 8-21-13, colony 25 on 8-24-13, colony 229 on 8-24-13 and 8-26-13, and colony 242 on 8-25-13 (Binomial test, p < 0.05) (Fig 7). 8) (S4 Dataset, S1 Movie). Considering each of the thirteen films individually, eight films showed significantly fewer interactions after removals than before removals: colony 367 on 8- 20-13 and 8-21-13, colony 868 on 8-19-13 and 8-21-13, colony 25 on 8-24-13, colony 229 on 8-24-13 and 8-26-13, and colony 242 on 8-25-13 (Binomial test, p < 0.05) (Fig 7). The interaction utilization distribution maps show that the highest number of interactions occurs at the entrances to the tunnels to the deeper nest, both before and after removals (Fig 8) (S4 Dataset). 3. Spatial distribution of interactions Several minutes after the rate of returning foragers was experimentally reduced, there were sig- nificantly fewer ant interactions in the entrance chamber (Paired t-test, p = 0.003) (Figs 7 and 10 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 5. Comparison of significant cross-correlations in lag times for a single colony. All lag times are from colony 367 on August 20, 2013, the only trial that showed significant lag times for all three cross- correlations. Each bar shows the lag of a significant cross-correlation between 1) rate of forager return and rate at which ants ascended to the entrance chamber from the deeper nest, 2) rate of forager return and rate at which ants descended to the deeper nest, and 3) rate at which ants ascended to the entrance chamber and rate at which ants descended to the deeper nest. Fig 5. Comparison of significant cross-correlations in lag times for a single colony. All lag times are from colony 367 on August 20, 2013, the only trial that showed significant lag times for all three cross- correlations. Each bar shows the lag of a significant cross-correlation between 1) rate of forager return and rate at which ants ascended to the entrance chamber from the deeper nest, 2) rate of forager return and rate at which ants descended to the deeper nest, and 3) rate at which ants ascended to the entrance chamber and rate at which ants descended to the deeper nest. Fig 5. Comparison of significant cross-correlations in lag times for a single colony. All lag times are from colony 367 on August 20, 2013, the only trial that showed significant lag times for all three cross- correlations. Each bar shows the lag of a significant cross-correlation between 1) rate of forager return and rate at which ants ascended to the entrance chamber from the deeper nest, 2) rate of forager return and rate at which ants descended to the deeper nest, and 3) rate at which ants ascended to the entrance chamber and rate at which ants descended to the deeper nest. doi:10.1371/journal.pone.0141971.g005 8) (S4 Dataset, S1 Movie). Interactions Regulate Foraging in Harvester Ants Fig 6. Comparison of time lags between ant activities. Each bar shows the duration in seconds of the lag between two rates, with data pooled across six colonies and eight days: 1) rate of forager return and rate at which ants ascended to the entrance chamber from the deeper nest, 2) rate of forager return and rate at which ants descended to the deeper nest from the entrance chamber, and 3) rate at which ants ascended to the entrance chamber from the deeper nest and rate at which ants descended to the deeper nest from the entrance chamber. The figure shows lag values only for the cross-correlations that were statistically significant. Error bars show standard errors of the mean. Numbers above bars signify sample sizes. Fig 6. Comparison of time lags between ant activities. Each bar shows the duration in seconds of the lag between two rates, with data pooled across six colonies and eight days: 1) rate of forager return and rate at which ants ascended to the entrance chamber from the deeper nest, 2) rate of forager return and rate at which ants descended to the deeper nest from the entrance chamber, and 3) rate at which ants ascended to the entrance chamber from the deeper nest and rate at which ants descended to the deeper nest from the entrance chamber. The figure shows lag values only for the cross-correlations that were statistically significant. Error bars show standard errors of the mean. Numbers above bars signify sample sizes. doi:10.1371/journal.pone.0141971.g006 interactions per sec). Ants that left the nest to forage also spent significantly less time in the entrance chamber (mean 7.51 sec) than those that descended to the deeper nest (mean 16.03 sec). Our results show that during the period of foraging activity, the rate of forager return helps to regulate the rate at which foragers become available to forage. Most of the ants in the entrance chamber are foragers: of the ants that came from the deeper nest into the entrance chamber, most left the nest to forage. Almost half the ants that did not forage went back down into the deeper nest (Fig 2). The regulation of the number of ants in the entrance chamber allows the colony to adjust forager availability quickly in response to changing conditions. PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Discussion Ants in the entrance chamber that leave the nest to forage have experienced more interactions, in the form of brief antennal contacts, than ants that descend to the deeper nest without forag- ing. The availability of foragers in the entrance chamber is regulated by another process that determines the flow of ants into and out of the entrance chamber from the deeper nest. This movement of ants in and out of the entrance chamber from the deeper nest, which determines the availability of foragers, is associated with the rate of forager return. The more frequently that returning foragers come in, the more frequently ants descend from the entrance chamber to the deeper nest, and in turn, the more frequently foragers ascend to the entrance chamber from the deeper nest. In this way, higher rates of forager return lead to the presence of more available foragers, as previously observed [13]. Interactions occur at highest density in the nest entrance and the entrances of the tunnels leading to the deeper nest. Our result supports previous work showing that ants in the entrance chamber determine whether to forage based on the rate of interactions with returning, successful foragers [11,12,32] and showed that the rate of forager return is correlated with the rate of interactions inside the nest [13]. Here we show directly that the ants that left the entrance chamber to forage had experienced a significantly higher rate of interactions (mean 1.47 interactions per sec) than ants that descended from the entrance chamber to the deeper nest without foraging (mean 0.83 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 11 / 18 When food availability is high, foragers find food quickly, leading to a high rate of forager return [47]. The number of ants in the entrance chamber depends on the rate of forager return [13]. The rate of forager return is linked with a short lag (mean 18 seconds) to the rate at which ants descend to the deeper nest (Table 1). The returning foragers sometimes deposit their food in the entrance chamber for other ants to carry to the lower nest, but in the exposed entrance chambers that we filmed, more often returning foragers descended still carrying the food items they brought back (more 12 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 7. Comparison of number of interactions in the entrance chamber before and after removals. Black: the number of interactions observed from one film frame at the start of forager removals; White: the number of interactions observed from one film frame 3–5 minutes after removal of returning foragers was completed. doi:10 1371/journal pone 0141971 g007 Fig 7. Comparison of number of interactions in the entrance chamber before and after removals. Black: the number of interactions observed from one film frame at the start of forager removals; White: the number of interactions observed from one film frame 3–5 minutes after removal of returning foragers was completed. doi:10.1371/journal.pone.0141971.g007 doi:10.1371/journal.pone.0141971.g007 discussion below). The rate at which foragers ascend is linked with a significantly longer lag (mean 38.25 seconds) to the rate at which ants descend (Table 1). When the rate of forager return slows, indicating low food availability, the number of available foragers in the entrance chamber also slows [13]. The number of interactions in the entrance chamber nest decreases with low forager return (Figs 7 and 8), further decreasing the probability ants will leave the nest to forage (Fig 4A). The process that regulates the numbers in the entrance chamber is very rapid; most ants in the entrance chamber either forage or descend in less than 20 seconds. The rapid turnover of ants entering and leaving the entrance chamber may help to limit the number of waiting ants in the entrance chamber [13], who could slow the rate of interactions with incoming, successful foragers. The different lags between rates of forager return, ascending ants, and descending ants may be due to different processes. PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants Fig 8. Spatial distribution of interactions. Each interaction utilization distribution map shows the location of interactions, brief antennal contacts betwee ants, that were observed from instantaneous images. The left figure of each pair shows interactions at the very beginning of an experiment that decreased the rate of incoming foragers, and the right figure shows interactions 3–5 minutes after the experiment was complete. White shows the areas of highest interaction density for each pair of heat maps, yellow shows areas with some interactions, and red shows areas with no interactions. The tunnel entrance/e is indicated with a T and the nest entrance/exit is indicated with an N. The scales for size and color are relative to each pair of maps. doi:10.1371/journal.pone.0141971.g008 Fig 8. Spatial distribution of interactions. Each interaction utilization distribution map shows the location of interactions, brief antennal contacts between ants, that were observed from instantaneous images. The left figure of each pair shows interactions at the very beginning of an experiment that decreased the rate of incoming foragers, and the right figure shows interactions 3–5 minutes after the experiment was complete. White shows the areas of highest interaction density for each pair of heat maps, yellow shows areas with some interactions, and red shows areas with no interactions. The tunnel entrance/exit is indicated with a T and the nest entrance/exit is indicated with an N. The scales for size and color are relative to each pair of maps. Fig 8. Spatial distribution of interactions. Each interaction utilization distribution map shows the location of interactions, brief antennal contacts between ants, that were observed from instantaneous images. The left figure of each pair shows interactions at the very beginning of an experiment that decreased the rate of incoming foragers, and the right figure shows interactions 3–5 minutes after the experiment was complete. White shows the areas of highest interaction density for each pair of heat maps, yellow shows areas with some interactions, and red shows areas with no interactions. The tunnel entrance/exit is indicated with a T and the nest entrance/exit is indicated with an N. The scales for size and color are relative to each pair of maps. Fig 8. Spatial distribution of interactions. Each interaction utilization distribution map shows the location of interactions, brief antennal contacts between ants, that were observed from instantaneous images. For example, the lag times between ascending ants and descend- ing ants were approximately factors of one another in two cases (30 and 68 seconds for colony N_5 on 8-20-13; and 13, 29, and 69 seconds for colony 367 on 8-20-13). This suggests a period- icity in the behavior of ascending into and descending from the entrance chamber. It is inter- esting to note that the lag between returning foragers and ascending ants tends to be larger than both the lags between returning foragers and descending ants and between ascending and descending ants. This is what we would expect if the same ants return from foraging, descend to the deeper nest, drop off their food, and then ascend back to the entrance chamber to be available to leave on the next foraging trip. More work is needed to determine how often returning foragers carry their food into the deeper nest, or instead deposit it in the entrance chamber for other ants to transport down to the seed chambers in the deeper nest. A number of factors influence the spatial distribution and frequency of interactions. Har- vester ant colonies vary consistently from year to year in foraging activity [12,37]. These PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 13 / 18 Interactions Regulate Foraging in Harvester Ants in the timing of interactions and in the relation between the rate of forager return and of the flow of ants into the entrance chamber. In another species of harvester ant, the rate of recruit- ment to food increased with the number of tunnels leading from the entrance chamber to the deeper nest [48]. Our heat maps of interaction rate (Fig 8) show that interactions in the entrance chamber tend to occur at the exit to the surface and at the entrances to tunnels leading down to the deeper nest. Conclusions Individual workers in social insect colonies respond to rates of interaction with other workers. Collectively, this allows a colony to regulate its behavior and respond to changing conditions. Here we show that interactions regulate both the activation of foragers and the availability of foragers to be activated. Variation among harvester ant colonies in the regulation of foraging is associated with variation in reproductive success [37]. Investigating the allocation of effort in ant colonies contributes to a fundamental question in biology: how local interactions produce the collective behavior of the whole system. Supporting Information S1 Appendix. Matlab script for recording information about ant interactions. This is a Matlab function that opens up a stack of JPEG images and allows a user to move through the images and ‘click’ anywhere on any image to record x-y coordinates of events in the frame. The output is a csv file with 6 columns: xy coordinates of the click, time = frame/image number, ant ID, ant type, and activity—both of which are pre-defined by the user, see below. Copyright (C) 2015 Noa Pinter-Wollman. (PDF) S1 Dataset. 2012 Ant Activity Data. We observed ants in two minutes of each of the nine films to determine what percentage of the ants that ascended from the deeper nest into the entrance chamber were later outgoing foragers, descending ants, or nest maintenance workers. Every five seconds, the first ant to ascend from the entrance tunnel was tracked until it left the nest, performed nest maintenance by moving dirt or debris around the nest entrance, or descended to the deeper nest. This dataset shows the activity type of each of the tracked ants. (PDF) S2 Dataset. 2012 Ant Interactions Data. We analyzed the JPEGs from the films using a cus- tom written MATLAB script as in Pinter-Wollman et al. [13] (code provided in S1 Appendix). We observed ten outgoing foragers and four or five descending ants per film, the first foraging and descending ants in the video segment that were clearly visible. This dataset shows the time each ant entered and left the entrance chamber, and the time and location of each interaction of the focal ants. S2 Dataset. 2012 Ant Interactions Data. We analyzed the JPEGs from the films using a cus- tom written MATLAB script as in Pinter-Wollman et al. [13] (code provided in S1 Appendix). We observed ten outgoing foragers and four or five descending ants per film, the first foraging and descending ants in the video segment that were clearly visible. This dataset shows the time each ant entered and left the entrance chamber, and the time and location of each interaction of the focal ants. (PDF) S3 Dataset. 2013 Correlation Data. We observed and filmed behavior inside the nest during and after forager removals. This dataset shows our counts made from the films of the numbers of returning and outgoing foragers at the nest entrance and the number of ascending and descending ants at all tunnel entrances. The left figure of each pair shows interactions at the very beginning of an experiment that decreased the rate of incoming foragers, and the right figure shows interactions 3–5 minutes after the experiment was complete. White shows the areas of highest interaction density for each pair of heat maps, yellow shows areas with some interactions, and red shows areas with no interactions. The tunnel entrance/exit is indicated with a T and the nest entrance/exit is indicated with an N. The scales for size and color are relative to each pair of maps. doi:10.1371/journal.pone.0141971.g008 doi:10.1371/journal.pone.0141971.g008 variations may arise from colony-specific differences in how interaction rates affect the forag- ing decisions of ants. The three colonies filmed in 2013 differed in interaction rates, and inter- action rates differed between two of the days (August 14th and August 15th). Colony differences in interaction rate could be related to variation in nest structure [38,41,42]. Nests vary in the size and shape of the entrance chamber and in the number of tunnels leading from the chamber to the deeper nest (Fig 8). This variation may lead to differences among colonies PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 14 / 18 Acknowledgments We thank LeAnn Howard, Andrew Merrell, Stefan Popp, Jack Rasiel, Wallis Robinson, Brett Salazar, Daniel Washington, and Charlotte Wayne for assistance in the field. We are grateful to Luke Frishkoff, Aaron Goodman, and Lane McIntosh for help with coding and plotting data. Mark Goldman provided very helpful discussion and advice. We thank Tomer Czackes and an anonymous reviewer whose comments greatly improved the manuscript. Author Contributions Conceived and designed the experiments: EP JQ NP-W DMG. Performed the experiments: EP JQ. Analyzed the data: EP JQ NP-W SC KA MBM DMG. Contributed reagents/materials/anal- ysis tools: NP-W SC KA. Wrote the paper: EP JQ NP-W DMG. Supporting Information (ZIP) S3 Dataset. 2013 Correlation Data. We observed and filmed behavior inside the nest during and after forager removals. This dataset shows our counts made from the films of the numbers of returning and outgoing foragers at the nest entrance and the number of ascending and descending ants at all tunnel entrances. (ZIP) S4 Dataset. 2013 Heat Maps Data. After splitting the 2013 videos into JPEG frames, we marked the location in the entrance chamber of each interaction of the ants we tracked. This dataset shows the locations of interactions from two instantaneous images, one at the start of S4 Dataset. 2013 Heat Maps Data. After splitting the 2013 videos into JPEG frames, we marked the location in the entrance chamber of each interaction of the ants we tracked. This dataset shows the locations of interactions from two instantaneous images, one at the start of 15 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants the removal of returning foragers, and the other immediately after forager removals ended 3–5 minutes later. (PDF) the removal of returning foragers, and the other immediately after forager removals ended 3–5 minutes later. (PDF) S1 Fig. Sampling time distribution histograms. These histograms show the distribution of times that foraging and descending ants filmed in 2012 remained in the entrance chamber. (TIF) S1 Fig. Sampling time distribution histograms. These histograms show the distribution of times that foraging and descending ants filmed in 2012 remained in the entrance chamber. (TIF) S1 Movie. Interactions over time for a single colony. The attached clip shows the location of interactions, in the form of brief antennal contacts between ants, in colony 367 on August 20, 2013. Removal of returning foragers began at 00:37 and ended at 05:41. There is an observable difference between 00:37 seconds and 2:37. By 2:37, as the rate of forager return decreases, the ants are no longer as spread out in the entrance chamber, and interactions occur only at the interaction hotspots (Fig 8), the entrance to tunnels to the deeper nest and the exit from the chamber to outside the nest. The circular metal device is a thermometer and humidity sensor. Some of the ants were painted previously for a different experiment. (MP4) S1 Table. Red harvester ant colonies filmed in August 2012 and August 2013. (DOCX) S1 Table. Red harvester ant colonies filmed in August 2012 and August 2013. (DOCX) PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 References 1. Sumpter DJT. Collective Animal Behavior. Princeton, New Jersey: Princeton University Press; 2010. 1. Sumpter DJT. Collective Animal Behavior. Princeton, New Jersey: Princeton University Press; 2010. 2. Navlakha S, Bar-Joseph Z. Distributed information processing in biological and computational systems. Commun. ACM. 2014; 58:94–102. 3. Prabhakar B, Dektar KN, Gordon DM. The regulation of ant colony foraging activity without spatial infor- mation. PLoS Comput Biol. 2012; 8: 1002670. 4. Gordon DM. Ant Encounters. Princeton, New Jersey: Princeton University Press; 2010. 5. Bonabeau E, Theraulaz G, Deneubourg J-L, Aron S, Camazine S. Self-organization in social insects. Trends Ecol Evol. 1997; 12: 188–193. PMID: 21238030 6. Camazine S. Self-organizing pattern formation on the combs of honey bee colonies. Behav Ecol and Sociobiol. 1991; 28(1): 61–76. 7. Bonabeau E, Theraulaz G, Deneubourg JL, Franks NR, Rafelsberger O, Joly JN, et al. A model for the emergence of pillars, walls and royal chambers in termite nests. Philos Trans R Soc London B. 1998; 353: 1561–1576. 16 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants 8. Camazine S, Visscher PK, Finley J, Vetter RS. House-hunting by honey bee swarms: collective deci- sions and individual behaviors. Insectes Soc. 1999; 46(4): 348–360. 9. Pratt SC, Sumpter DJT. A tunable algorithm for collective decision-making. PNAS. 2006; 103(43): 15906–15910. PMID: 17038502 10. Sonnentag PJ, Jeanne RL. Initiation of absconding-swarm emigration in the social wasp Polybia occi- dentalis. Insect Sci. 2009; 9(11): 1–11. 11. Gordon DM, Holmes S, Nacu S. The short-term regulation of foraging in harvester ants. Behav Ecol. 2008; 19: 217–222. 12. Gordon DM, Guetz A, Greene MJ, Holmes S. Colony variation in the collective regulation of foraging by harvester ants. Behav Ecol. 2011; 22: 429–435. PMID: 22479133 13. Pinter-Wollman N, Bala A, Merrell A, Queirolo J, Stumpe MC, Holmes S, Gordon DM. Harvester ants use interactions to regulate forager activation and availability. Animal Behaviour. 2013; 30: 1–11. 14. O’Donnell S. Worker biting interactions and task performance in a swarm-founding eusocial wasp (Polybia occidentalis, Hymenoptera: Vespidae). Behav Ecol. 2001; 12: 353–359. 15. Fernandez PC, Gil M, Farina WM. Reward rate and forager activation in honeybees: recruiting mecha- nisms and temporal distribution of arrivals. Behav Ecol Sociobiol. 2003; 54: 80–87. 16. Mailleux AC, Buffin A, Detrain C, Deneubourg J-L (2010) Recruiter or recruit: who boosts the recruit- ment in starved nests in mass foraging ants? Anim Behav 79:31–35. 17. References Biesmeijer JC, van Nieuwstadt MGL, Lukacs S, Sommeijer MJ. The role of internal and external infor- mation in foraging decisions of Melipona workers (Hymenoptera: Meliponinae). Behav Ecol Sociobiol. 1998; 42:107–116. (interactions, foraging, bees) 18. Kietzman PM, Visscher PK. The anti-waggle dance: use of the stop signal as negative feedback. Front. Ecol. Evol. 2015; 3(14): 1–5. 19. Schneider SS, Lewis LA. The vibration signal, modulatory communication and the organization of labor in honey bees, Apis mellifera. Apidologie. 2004; 35: 117–131. 20. Dussutour A, Fourcassié V, Helbing D, Deneubourg J-L. Optimal traffic organization in ants under crowded conditions. Nature. 2004; 428: 70–73. PMID: 14999281 21. Farji-Brener AG, Amador-Vargas S, Chinchilla F, Escobar S, Cabrera S, Herrera MI, et al. Information transfer in head-on encounters between leaf-cutting ant workers: food, trail condition or orientation cues? Anim. Behav. 2010; 79: 343–349. 22. Czackes TJ, Grüter C, Ratnieks FLW. Negative feedback in ants: crowding results in less trail phero- mone deposition. J R Soc Interface. 2013; 10: 1–6. 23. Toffin E, Di Paolo D, Campo A, Detrain C, Deneubourg J-L (2009) Shape transition during nest digging in ants. Procs Natl Acad Sci U S A 106:18816–18620. 24. Gordon DM, Paul RE, Thorpe K. What is the function of encounter patterns in ant colonies? Anim. Behav. 1993; 45: 1083–1100. 25. Gordon DM. The expandable network of ant exploration. Elsevier. 1995; 50(4):995–1007. 26. Huang Z-Y, Robinson GE. Regulation of honey bee division of labor by colony age demography. Behav Ecol Sociobiol. 1996; 39: 147–158. 27. Wilson EO. The relation between caste ratios and division of labor in the ant genus Pheidole (Hyme- noptera: Formicidae). Behav Ecol Sociobiol. 1984; 16(1): 89–98. 28. Gordon DM. The dynamics of the daily round of the harvester ant colony (Pogonomyrmex barbatus). Animal Behaviour. 1986; 34(5): 1402–1419. 29. Gordon DM. The regulation of foraging activity in red harvester ant colonies. Am Nat. 2002; 159: 509– 518. doi: 10.1086/339461 PMID: 18707433 30. Greene M, Gordon DM. Cuticular hydrocarbons inform task decisions. Nature. 2003(423: ): 32. 31. Greene M, Gordon DM. Interaction rate informs harvester ant task decisions. Behav Ecol. 2007; 18(2): 451. 32. Greene MJ, Pinter-Wollman N, Gordon DM. Interactions with combined chemical cues inform harvester ant foragers’ decisions to leave the nest in search of food. PLoS One. 2013; 8(1): 52219. 33. Lighton JRB, Bartholomew GA. PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 References Standard energy metabolism of a desert harvester ant Pogonomyrmex rugosus: effects of temperature, body mass, group size and humidity. Proc Natl Acad Sci U S A. 1988; 85: 4765–4769. PMID: 16593953 34. Lighton JRB, Feener DH. Water-loss rate and cuticular permeability in foragers of the desert ant Pogo- nomyrmex rugosus. Physiol Zool. 1989; 62: 1232–1256. 17 / 18 PLOS ONE | DOI:10.1371/journal.pone.0141971 November 5, 2015 Interactions Regulate Foraging in Harvester Ants 35. Gordon DM. How colony growth affects forager intrusion between neighboring harvester ant colonies. Behav Ecol Sociobiol. 1992; 31: 417–427. 36. Adler FR, Gordon DM. Optimization, conflict, and nonoverlapping foraging ranges in ants. Am Nat. 2003; 162: 529–543. PMID: 14618533 37. Gordon DM. The rewards of restraint in the collective regulation of foraging by harvester ant colonies. Nature. 2013; 498: 91–93. doi: 10.1038/nature12137 PMID: 23676676 38. Burd M, Shiwakoti N, Sarvi M, Rose G. Nest architecture and traffic flow: large potential effects from small structural features. Ecol Entomol. 2010; 35(4): 464–468. 39. Adler FR, Gordon DM. Information collection and spread by networks of patrolling ants. Am Nat. 1992; 140: 373–400. doi: 10.1086/285418 PMID: 19426049 40. Pinter-Wollman N, Wollman R, Guetz A, Holmes S, Gordon DM. The effect of individual variation on the structure and function of interaction networks in harvester ants. J R Soc Interface. 2011; 8: 1562–1573. doi: 10.1098/rsif.2011.0059 PMID: 21490001 41. Dussutour A, Fourcassié V, Helbing D, Deneubourg J-L. Optimal traffic organization in ants under crowded conditions. Nature. 2004; 428: 70–73. PMID: 14999281 42. Dussutour A, Beshers S, Deneubourg J-L, Fourcassié V. Crowding increases foraging efficiency in the leaf-cutting ant Atta colombica. Insectes Soc. 2007; 54(2): 158–165. 43. Schafer RJ, Holmes S, Gordon DM. Forager activation and food availability in harvester ants. Animal Behaviour. 2006; 71: 815–822. 44. Gordon DM. Group-level exploration tactics in fire ants. Behaviour. 1988; 104:162–175. 45. Gordon DM, Paul REH, Thorpe K. What is the function of encounter patterns in ant colonies? Animal Behaviour. 1993; 45:1083–1100. 46. R Core Team 2013. R: A language and environment for statistical computing. R Foundation for Statisti- cal Computing, Vienna, Austria. Available: http://www.R-project.org/. 47. Beverley BD, McLendon H, Nacu S, Holmes S, Gordon DM. How site fidelity leads to individual differ- ences in the foraging activity of harvester ants. Behavioral Ecology. 2009; 20: 633–638. 48. Pinter-Wollman N. Nest architecture shapes the collective behavior of harvester ants. Biology Letter. 2015, in press. 18 / 18
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Comparative Quantification of 14 Bioactive Compounds in Camellia ptilophylla and Camellia sinensis
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Comparative Quantification of 14 Bioactive Compounds in Camellia ptilophylla and Camellia sinensis Sihui Ying  South China Agricultural University Qiuyan Huang  South China Agricultural University Sen Lu  South China Agricultural University Xiong Gao  Guangdong Academy of Sciences Zhongzheng Chen  South China Agricultural University Yuanyuan Zhang  South China Agricultural University Xiaoshan Liu  South China Agricultural University Bin Li  South China Agricultural University Xiaorong Lin  (  xiaoronglin@scau.edu.cn ) South China Agricultural University Sihui Ying  South China Agricultural University Qiuyan Huang  South China Agricultural University Sen Lu  South China Agricultural University Xiong Gao  Guangdong Academy of Sciences Zhongzheng Chen  South China Agricultural University Yuanyuan Zhang  South China Agricultural University Xiaoshan Liu  South China Agricultural University Bin Li  South China Agricultural University Xiaorong Lin  (  xiaoronglin@scau.edu.cn South China Agricultural University Research Article License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/15 Page 1/15 Abstract Camellia ptilophylla is a rare tea species discovered in southern China which naturally containing low caffeine but high theobromine, high trans-catechin, and two special polyphenols, gallocatechin-3,5- digallate and 1,2,4,6-tetragalloyl glucose. But the commonly-used methods for the quantification of tea bioactive compounds do not cover these two special polyphenols, limiting the systematical phytochemical analysis of Camellia ptilophylla. Herein, we explored a high-performance liquid chromatography-based method to quantify 14 bioactive compounds including three methylxanthines, eight catechin monomers, gallic acid, gallocatechin-3,5-digallate, and 1,2,4,6-tetragalloyl glucose, and applied it on Camellia ptilophylla and six typical Chinese teas from Camellia sinensis. The present method facilitated the effective separation of 14 tea bioactive compounds within 35 min with good linearity (R2 ≥0.9999), excellent sensitivity and reproducibility with a limit of detection of 1.2272-19.7611 ng/mL and a relative standard deviation lower than 4.1%, and satisfactory recoveries of the spiked samples of 95.57%-106.93% with the relative standard deviation lower than 5%. Basing on this method, the characteristics of high theobromine (3.4-4.8%), low caffeine (0.01-0.2%), high gallocatechin gallate (6.3-8.1%) and catechin (C, 2.2-3.4%), low epigallocatechin gallate (2.2-3.0%) and epicatechin (0.3-0.6%), and containing gallocatechin-3,5-digallate (0.6-0.9%) and 1,2,4,6-tetragalloyl glucose (0.5-1.1%) of Camellia ptilophylla were confirmed. This unique profile of bioactive compounds was not found in six typical Chinese teas from Camellia sinensis. In conclusion, theobromine, gallocatechin gallate, catechin, gallocatechin-3,5-digallate, and 1,2,4,6-tetragalloyl glucose with steadily high content were recognized as the characteristic bioactive components of Camellia ptilophylla. Introduction Tea, which originated from China, has become one of the most popular non-alcohol beverages in the world. This worldwide prevalence of tea derived from the wide consensus of consumers about its health- beneficial effects. Tea polyphenols and methylxanthines have been recognized as the dominant chemical basis of the health functions of tea including anti-oxidant, anti-inflammatory, anti-cancer, anti-diabetic, and anti-obesity effects, etc(Tang et al. 2019). Thus, the detection of tea polyphenols and methylxanthines provides key indications of the bioactivities of teas. Though tea polyphenols and methylxanthines comprise various monomers, only caffeine (Caf) and four cis-type catechins including (-)-epicatechin (EC), (-)-epigallocatechin (EGC), (-)-epicatechin gallate (ECG), and (-)-epigallocatechin gallate (EGCG) (Fig. 1) are generally determined as they dominate the content of methylxanthines (90%-95%) and tea polyphenols (50%-60%) respectively in common tea varieties(Determination of substances characteristic of green and black tea - Part 2: Content of catechins in green tea - Method using high-performance liquid chromatography). However, benefiting from the efforts of breeding, an increasing number of special tea varieties have been reported. Amongst, Camellia ptilophylla Chang (C. ptilophylla) discovered in 1981 in South China(Zhang H 1981) attracted the most attention in the recent decade. C. ptilophylla contained extremely low Caf (0- 0.1%) but high theobromine (Tb, 3–7%) instead. In addition, trans-catechins including (+)-catechin (C), Page 2/15 Page 2/15 Page 2/15 (+)-gallocatechin (GC), (-)-catechin gallate (CG), and (-)-gallocatechin gallate (GCG) (Fig. 1) are found as the predominant catechins (80% of total polyphenols) in C. ptilophylla(Lin et al. 2014). Moreover, two novel phenolic compounds involving (-)-gallocatechin-3,5-di-O-gallate (GC-3,5-diGA), and 1,2,4,6-Tetra-O- galloyl-β-D-glucopyranose (1,2,4,6-GA-glc) are discovered in the extracts of C. ptilophylla(Kurihara et al. 2006). This peculiar chemical composition provides C. ptilophylla with dramatically higher anti- angiogenesis(Gao et al. 2020; Li et al. 2017), anti-oxidant(Kuang et al. 2020), anti-inflammatory(Gao et al. 2017), and hypolipemic(Kurihara et al. 2006) bioactivity but much lower central nervous exciting effect(Xu et al. 1990) compared to common tea varieties. Accordingly, accurate quantification of these dominant bioactive compounds in C. ptilophylla is required for the evaluation of its health effects. Herein, we explored a high-performance-liquid-chromatography (HPLC)-based approach for the simultaneous detection of 11 tea polyphenols and 3 methylxanthines (Fig. 1). Additionally, method validation was further performed by the evaluation of the linearity, precision, repeatability, extraction recovery, the limit of detection (LOD), and the limit of quantification (LOQ). On this basis, the method was applied to the water exacts of tea leaves from C. Introduction ptilophylla and six typical Chinese teas including green tea, oolong tea, black tea, white tea, yellow tea, and dark tea from C. sinensis to compare the patterns of major bioactive compounds. The present study enables the feasibility of rapid quantification of 14 major bioactive compounds in various types of teas from C. ptilophylla and C. sinensis and benefits the discovery of novel special tea varieties. Tea Samples and Chemicals Green tea of C. ptilophylla processed by our group previously in different years (2014, 2015, 2016, 2018, 2019, 2020, and 2021) were sealed and stored at 4°C. Six typical Chinese teas, including Fuding Dabai white tea, Junshan Yinzhen yellow tea, Yunnan large-leaf green tea, Yunnan large-leaf black tea, Jinguanyin oolong tea, and Yunnan Pu-erh dark tea, were obtained from Beijing Yunkai Yaji Tea Culture Center (Beijing, China), Guangdong Huahai Sugar Development Co., Ltd (Xuwen, Guangdong, China), Huaiji Gaoshanqing Agricultural Products Co., Ltd (Zhaoqing, Guangdong, China) and Guangdong Tea Import & Export Co., Ltd (Guangzhou, Guangdong, China), respectively. GA (≥ 98%), Tb (≥ 98%), Caf (≥ 98%), and Tp (≥ 98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). EC (≥ 98%), EGC (≥ 98%), EGCG (≥ 98%), ECG (≥ 98%), CG (≥ 98%), GCG (≥ 98%), GC (≥ 98%), and C (≥ 98%) were purchased from Shanghai Yuanye Bio-Technology Co., Ltd (Shanghai, China). GC-3,5- diGA and 1,2,4,6-GA-glc from C. ptilophylla were purified in our laboratory by preparative HPLC. HPLC grade acetonitrile and methanol were purchased from Merck (Darmstadt, Germany). Trifluoroacetic acid (HPLC grade) and Folin-Ciocalteu Reagent (1 mol/L) were obtained from Shanghai Macklin Biochemical Co., Ltd (Shanghai, China). Ultrapure water was prepared via a Millipore Milli-Q purification system (Millipore Corp, Bedford, MA). Determination of the Content of Total Polyphenol and Water Extract Determination of the Content of Total Polyphenol and Water Extract The content of total polyphenols of green tea from C. ptilophylla and six typical teas from C. sinensis were determined via the colorimetric method using Folin-Ciocalteau reagent(Determination of substances characteristic of green and black tea — Part 1: Content of total polyphenols in tea — Colorimetric method using Folin-Ciocalteu reagent 2005). The water extract content was calculated based on the weight of tea hot-water-insoluble residues according to ISO 9768: 1994(Tea — Determination of water extract 1994) with a slight modification. Tea leaves were extracted using a boiling water bath and the residues were dried at 120 ± 2°C. Page 3/15 Preparation of Standard Solutions and Tea Samples Page 3/15 GA, Tb, Tp, Caf, C, EC, GCG, EGCG, CG, ECG, 1,2,4,6-GA-glc, GC-3,5-diGA, GC, and EGC were dissolved in 20% (w/w) acetonitrile and diluted to obtain a series of working solutions. Tea leaves (0.3 g), ground and sieved ranging from 20 to 30 mesh, were extracted with 45 mL of ultrapure water in a boiling water bath for 45 min. Subsequently, cooled tea extracts were fixed to 50 mL and diluted 1-fold with water followed by the filtration with a 0.22 µm PES filter (Anpel, Shanghai, China). HPLC Determination of 14 Bioactive Compounds The HPLC analysis of tea polyphenols and methylxanthines was performed on a Shimadzu LC 2030C 3D plus workstation, including a Shimadzu Prominence-i LC-2030C 3D chromatography, a PDA detector, a column oven, and an autosampler (Shimadzu, Kyoto, Japan). Samples (10 µL) were eluted on an Agilent Poroshell 120 Bonus-RP (4.6 mm×50 mm, 2.7µm) column with trifluoroacetic acid aqueous solution (0.05%, solvent A) and acetonitrile (solvent B) at 30°C with a flow rate of 0.8 mL/min. The gradient elution was performed as follows: 100%A from 0 to 8 min, 100%A decreased to 91%A from 8 to 17 min, 91%A decreased to 82%A from 17 to 25 min, 82%A decreased to 76% A from 25 to 30 min, and 76% A decreased to 72% from 30 to 35 min. The absorbance at 280 nm was recorded and calculated with LabSolutions 5.8 (Shimadzu). The linearity, precision, repeatability, extraction recovery, LOD, and LOQ were evaluated for method validation. Relative standard deviations (RSDs) of the peak areas from five injections of the mix solutions of 14 standards were calculated to access the precision. RSDs of the 14 compounds in five replicate tea extracts from C. ptilophylla were used for the repeatability evaluation. To determine the extraction recovery, tea extracts of C. ptilophylla mixed 1:1 with standard mixtures as the spiked group, tea extracts of C. ptilophylla mixed 1:1 with 20% (w/w) acetonitrile as the background group, and standard mixtures mixed with 2% (w/w) acetic acid in equal volume as the standard group were tested and compared. LOD and LOQ were obtained from the concentration of standard solutions diluted with 20% (w/w) acetonitrile when the signal-to-noise ratio (S/N) reached 3 and 10, respectively. Statistical Analysis All data from two individual measurements with three replicates were represented as mean values ±  standard deviation (SD). The significance of differences among various samples was evaluated by Page 4/15 Duncan’s multiple range test using SPSS 20.0. Simultaneous HPLC Determination of 14 Tea Compounds Despite the remarkable difference in the hydrophilicity and hydrophobicity among 14 tea bioactive compounds, they were perfectly eluted within 35 min on the reversed-phase column by 0.05% trifluoroacetic acid aqueous solution and acetonitrile in the present method (Fig. 1A). When the method was applied to the water extracts from C. ptilophylla and C. sinensis, all of these bioactive compounds were also effectively separated (Fig. 1B and Fig. 1C). It indicated that the detection of these 14 targeted compounds was not affected by the complexity of the tea matrix. Additionally, the HPLC chromatography of C. ptilophylla confirmed its high content of Tb and trans-type catechins but low content of Caf and cis- catechins. Furthermore, the presence of two novel compounds, GC-3,5- diGA and 1,2,4,6-GA -glc, in C. ptilophylla but not C. sinensis were also verified. This result preliminarily suggested the feasibility of this HPLC-based method for the rapid detection of 14 major bioactive compounds in C. ptilophylla and C. sinensis. To further validate the method, linearity, precision, repeatability, extraction recovery, LOD and LOQ were calculated (Fig. 2 and Table 1). Excellent linearity was observed between the concentration and the peak area of 14 compounds with the values of R-square higher than 0.999 (Fig. 3). A satisfactory precision was additionally suggested by the RSDs of all targeted compounds ranging from 0.12–1.08% for five consecutive tests (Table 1). Furthermore, the sound repeatability of this method was confirmed by the low RSDs of each component from tea samples extracted five times (Table 1). Moreover, the spiked recoveries of the 14 compounds ranging from 95.57–106.93% with the RSD values of 0.21%-4.88% also satisfied the requirement of the accurate quantification of 14 bioactive compounds in tea extracts (Table 1). The high sensitivity of this method was further revealed by the LODs of these compounds ranging from 1.2272 ng/mL to 19.7611 ng/mL and their LOQs of 17.2410-76.2649 ng/mL (Table 1). These results suggested the effectiveness, efficiency, accuracy, and reliability of this method in the quantitative analysis of 14 major tea polyphenols and methylxanthines. Simultaneous HPLC Determination of 14 Tea Compounds Page 5/15 Page 5/15 Page 5/15 Table 1 Method validation Compounds Precision RSD (%) Repeatability RSD (%) Recovery (%) Recovery RSD (%) LOD (ng/mL) LOQ (ng/mL) GA 0.17 2.98 103.07 1.06 4.16 17.24 Tb 0.17 2.07 102.13 1.18 8.97 21.16 Tp 0.13 3.07 106.93 0.21 1.23 10.31 GC 0.57 2.78 103.52 4.88 19.76 66.20 Caf 0.16 1.65 99.59 1.30 2.86 16.47 EGC 0.14 3.90 101.53 3.80 10.58 52.92 C 0.12 2.21 96.76 0.28 14.90 76.26 EC 0.32 2.30 96.12 1.19 17.98 44.37 EGCG 0.34 2.81 95.57 1.55 6.60 25.79 GCG 0.22 4.06 102.03 0.51 7.14 21.42 ECG 0.29 1.01 97.23 0.51 10.47 31.41 1,2,4,6-GA-glc 1.08 3.60 97.26 1.18 7.90 27.64 CG 0.30 3.15 98.86 1.92 6.37 28.54 GC-3,5-diGA 1.07 2.52 95.81 3.86 11.85 35.54 Table 1 Method validation Method validation Relative Correction Factors of Two Novel Compounds Relative Correction Factors of Two Novel Compounds As the reference standards of two novel phenolic compounds, GC-3,5-diGA and 1,2,4,6-GA-glc, were not commercially accessible, a feasible approach to access the content of these two monomers in tea samples was explored based on their relative correction factors to the other 12 compounds (Table 2). As suggested by the European Pharmacopoeia (EP10.0), the targeted compounds can be quantified using the commercial standards of the reference chemicals if their relative correction factors range from 0.8 to 1.2. Accordingly, Caf and Tp as well as ECG and CG were recommended to be the reference compounds for 1,2,4,6-GA-glc and GC-3,5-diGA, respectively (Table 2). Page 6/15 Table 2 Relative correction factors of two novel bioactive compounds discovered in C. ptilophylla to other 12 commercial reference compounds Reference compounds Relative correction factor 1,2,4,6-GA-glc GC-3,5-diGA GA 1.36 1.74 Tb 1.32 1.70 Caf 1.17 1.50 Tp 1.10 1.42 CG 0.74 0.95 ECG 0.67 0.86 GCG 0.59 0.76 EGCG 0.54 0.69 EC 0.28 0.36 C 0.27 0.34 GC 0.07 0.09 EGC 0.07 0.09 Table 2 Relative correction factors of two novel bioactive compounds discovered in C. ptilophylla to other 12 commercial reference compounds Reference compounds Relative correction factor 1,2,4,6-GA-glc GC-3,5-diGA GA 1.36 1.74 Tb 1.32 1.70 Caf 1.17 1.50 Tp 1.10 1.42 CG 0.74 0.95 ECG 0.67 0.86 GCG 0.59 0.76 EGCG 0.54 0.69 EC 0.28 0.36 C 0.27 0.34 GC 0.07 0.09 EGC 0.07 0.09 Composition of Bioactive Compounds in C. ptilophylla and C. sinensis Composition of Bioactive Compounds in C. ptilophylla and C. sinensis Composition of Bioactive Compounds in C. ptilophylla and C. sinensis Composition of Bioactive Compounds in C. ptilophylla and C. sinensis To profile the composition of bioactive compounds in C. ptilophylla, 14 compounds in green tea from C. ptilophylla and six typical Chinese teas from C. sinensis including green tea, oolong tea, black tea, white tea, yellow tea, and dark tea were detected and their percentage in the total water extracts were compared in Fig. 4. The 14 bioactive compounds were found to account for about 40% of the total water extract of green tea from C. ptilophylla. Amongst, tea polyphenols (33.1%), especially eight catechin monomers (30.6%), were recognized as the dominant bioactive compounds. In detail, the percentages of gallated catechins (19.8%), 2,3-trans structure (20.5%), and the pyrogallol-type catechins (23.7%) were higher than ungallated (10.8%), 2,3-cis (10.1%), and the catechol-type (7.0%). And GCG (13.5%) was found the predominant bioactive compound. In addition, the percentage of all methylxanthines in the water extracts of C. ptilophylla reached 7.2%, of which Tb showed the highest percentage of 7.0%. In the water extracts of all six typical Chinese teas, two special polyphenols, 1,2,4,6-GA-glc and GC-3,5- diGA, were not detected. Additionally, the bioactive compounds in green tea accounted for the highest percentage of the total water extract (38.5%), followed by oolong tea (29.3%), yellow tea (21.0%) and white tea (20.6%), black tea (8.8%) and dark tea (7.3%) the lowest. This difference mainly came from the different percentages of catechins in water extracts as shown in the following order: green tea (32.3%) > Page 7/15 Page 7/15 oolong tea (24.7%) > yellow tea (12.9%) and white tea (12.6%) > black tea (2.3%) > dark tea (0.8%). Furthermore, the percentages of methylxanthines in water extracts of six teas were found from 4.5–7.2%. Compared with green tea from C. ptilophylla, the percentage of catechins in the water extract of green tea from C. sinensis was higher. Among these catechins, the percentages of gallated catechins (19.7%), the 2,3-cis structure (21.7%), and the pyrogallol type (18.1%) were higher than those of ungallated (12.6%), 2, 3-trans (10.6%), and catechol (13.3%) type, with EGCG accounting for the highest (8.0%). However, the percentage of methylxanthines in C. sinensis (5.9%) was slightly lower than that of C. ptilophylla, with Caf accounting for the highest percentage (5.8%). This result proved the feasibility of this method in the detection of bioactive compounds in C. ptilophylla and C. sinensis without interference from different tea trees and processing methods. Composition of Bioactive Compounds in C. ptilophylla and C. sinensis It also confirmed the unique composition of bioactive compounds of C. ptilophylla. Amongst these compounds, 1,2,4,6-GA- glc and GC-3,5-diGA have demonstrated the unique bioactive compounds of C. ptilophylla. To further confirm the unique composition of C. ptilophylla, the content of 14 bioactive compounds in seven green teas of C. ptilophylla prepared in different years (2014–2021) was determined (Fig. 5). Most of the polyphenol monomers including GCG, EGCG, GC-3,5-diGA, C, EC, EGC, GA, 1,2,4,6-GA-glc, and GC in the green teas of C. ptilophylla showed differences less than 50% in their content. Amongst, the content of GCG, ranging from 6.3–8.2%, showed only a slight difference of less than 15%. But the content of ECG and CG in different green teas from C. ptilophylla fluctuated the most (reached 85%), which was mostly induced by the samples made in 2021. Among the three typical methylxanthines, the fluctuation range of Tb content is less than 18%, while the fluctuation range of Caf and Tp is much larger. Regardless, the Caf content of all green teas from C. ptilophylla was less than 0.2%, much lower than the breeding standard for the low-caffeine contained tea variety of 1%. These results indicated that the content of GCG and Tb, the two characteristic components of C. ptilophylla, are relatively stable. Though the Caf content in different green teas from C. ptilophylla fluctuated significantly, its phytochemical specificity of high Tb but low Caf did not change. Discussion Tb is a typical methylxanthine in cocoa with beneficial effects on cardiovascular, respiratory, renal, etc(Smit 2011). Generally, the content in tea trees is less than 0.1%. Ma and Zhang (1984) first reported Tb as the predominant methylxanthine of C. ptilophylla with a content of 4.4% (dry weight) (Ma Y and Zhang R 1984). Subsequently, they compared the composition of methylxanthines of C. ptilophylla with seven green tea, oolong tea, and black tea from C. sinensis using the HPLC method, and confirmed that only C. ptilophylla contained high Tb (3.02 ~ 4.68%), which was 11.7 ~ 15.1 times higher than other teas from C. sinenesis(Ma Y and Chen Y 1996). Gao et al. (2004) found that both cultivated and wild C. ptilophylla contained high Tb, but the Tb content in the cultivated tea trees was slightly lower than the latter He et al. (2011) indicated that the characteristic of high-Tb of C. ptilophylla was not affected by the planting seasons and the processing methods, but the Tb content of C. ptilophylla plucked in summer (6.06–6.26%) was higher than those plucked in spring (5.25–5.81%) and autumn (4.65 ~ 5.31%). The Page 8/15 Page 8/15 present study confirmed that the Tb content of different green teas from C. ptilophylla was 3.4–4.8% with a difference of less than 20%. These results demonstrated that Tb was a characteristic component of C. ptilophylla, even though the content of Tb might slightly vary due to harvest seasons and cultivation methods. present study confirmed that the Tb content of different green teas from C. ptilophylla was 3.4–4.8% with a difference of less than 20%. These results demonstrated that Tb was a characteristic component of C. ptilophylla, even though the content of Tb might slightly vary due to harvest seasons and cultivation methods. The particular composition of catechins in C. ptilophylla was not found in the early days due to the failure of Ultra Violet-Visible Spectroscopy to distinguish the cis- and trans catechin monomers(Li B et al. 2001; Gao K et al. 2004). In 2006, Kurihara et al. (2006) first indicated that the GCG content in the water extract of C. ptilophylla (199 mg/g) was 53 times higher than that of C. sinensis, but the contents of EGCG and EGC in C. ptilophylla extract were only a half of that of C. sinensis. Yang et al. (2007) further proved the high content of trans-type catechins in C. ptilophylla. Discussion They found that the contents of GCG (9.88%) and C (2.23%) in C. ptilophylla were 7- and 4-time higher than those of C. sinensis, respectively. The GC content of C. ptilophylla (1.17%) is comparable to that of C. sinensis, while the contents of EGCG, EGC, EC, and ECG were much lower than those of the latter. In addition, Peng et al. (2008,2011) indicated that the contents of GCG (7.4–7.6%), C (2.6–3.4%), and GC (1.5–2.7%) in C. ptilophylla were significantly higher than those of C. sinensis, but its CG content (006-0.1%) was similar to that of the latter. In the study of Li et al. (2012), they found that the contents of GCG, C, GC, and CG in C. ptilophylla were 8.11%, 3.26%, 1.67%, and 0.35%, respectively. In the present investigation, GCG and C were found the first two dominant catechin monomers in C. ptilophylla as their contents were as high as 6.3–8.1% and 2.5–3.5% with a slight difference less than 20%. But the contents of GC (0.5–1.2%) and CG (0.1–0.3%) in different green teas of C. ptilophylla were much lower with a great fluctuation as high as 80%. It could be concluded according to the above studies that GCG and C with a steadily high content were the characteristic catechins of C. ptilophylla. Fukui et al. (2005)first found the two special tea polyphenols, GC-3,5-diGA and 1,2,4,6-GA-glc, in the extract of C. ptilophylla with a content of 0.3% and 0.5%, respectively(Kurihara et al. 2006). On this basis, our previous study further confirmed the stronger antioxidant potentials of GC-3,5-diGA and 1,2,4,6-GA-glc purified from the ethanol/ethyl acetate extract of C. ptilophylla compared to GCG via the in vitro cell lines, indicating that these two special polyphenols were key bioactive compounds of C. ptilophylla(Kuang et al. 2020). Thus, we proposed an HPLC-based quantitative method for the above major bioactive compounds of C. ptilophylla, confirming that GC-3,5-diGA and 1,2 ,4,6-GA-glc were only found in C. ptilophylla with their contents of 0.6–0.9% and 0.5–1.1% but not detected in the six typical Chinese teas from C. sinensis. These results indicated GC-3,5-diGA and 1,2 ,4,6-GA-glc were also the characteristic phytochemical markers of C. ptilophylla. Declarations Funding This work was supported by the National Natural Science Foundation of China (grant number 31901652), the Natural Science Foundation of Guangdong Province, China (grant number 2018A030313917, grant number 2022A1515011080), and the Science and Technology Program of Guangzhou, China (grant number 202102020236). Data Availability The datasets generated and/or analyzed during the current study are available from the corresponding author on reasonable request. Competing Interests Sihui Ying declares that she has no conflict of interest. Qiuyan Huang declares that she has no conflict of interest. Sen Lu declares that he has no conflict of interest. Xiong Gao declares that he has no conflict of interest. Zhongzheng Chen declares that he has no conflict of interest. Yuanyuan Zhang declares that she has no conflict of interest. Xiaoshan Liu declares that she has no conflict of interest. Bin Li declares that she has no conflict of interest. Xiaorong Lin declares that she has no conflict of interest. Ethics Approval and Consent to Participate This article does not contain any studies with human participants or animals performed by any of the authors. Conclusions In conclusion, an HPLC strategy was developed in this study to quantify 14 bioactive compounds in C. ptilophylla and C. sinensis within 35 min. Based on this method, we verified that the particularity of high Tb content, high trans-catechins (GCG and C) content, and two special polyphenols of C. ptilophylla was not observed in the six typical Chinese teas of C. sienensis. Page 9/15 Page 9/15 41:31–39. 9. Kurihara H, Shibata H, Fukui Y et al (2006) Evaluation of the hypolipemic property of Camellia sinensis var. ptilophylla on postprandial hypertriglyceridemia. J Agr Food Chem 54:4977–4981. http://doi.org/10.1021/jf0603681 10. Li B, Zheng Y, Yin Y et al (2001) Research on the development and utilization of natural non-caffeine tea resources. Food Science:33–35. 11. Li K, Shi X, Yang X et al (2012) Antioxidative activities and the chemical constituents of two Chinese teas, Camellia kucha and C. ptilophylla. Int J Food Sci Tech 47:1063–1071. http://doi.org/10.1111/j.1365-2621.2012.02942.x 11. Li K, Shi X, Yang X et al (2012) Antioxidative activities and the chemical constituents of two Chinese teas, Camellia kucha and C. ptilophylla. Int J Food Sci Tech 47:1063–1071. http://doi.org/10.1111/j.1365-2621.2012.02942.x 12. Li KK, Peng JM, Zhu W et al (2017) Gallocatechin gallate (GCG) inhibits 3T3-L1 differentiation and lipopolysaccharide induced inflammation through MAPK and NF-κB signaling. J Funct Foods 30:159–167. http://doi.org/10.1016/j.jff.2017.01.016 12. Li KK, Peng JM, Zhu W et al (2017) Gallocatechin gallate (GCG) inhibits 3T3-L1 differentiation and lipopolysaccharide induced inflammation through MAPK and NF-κB signaling. J Funct Foods 30:159–167. http://doi.org/10.1016/j.jff.2017.01.016 13. Lin X, Chen Z, Zhang Y et al (2014) Interactions among chemical components of Cocoa tea (Camellia ptilophylla Chang), a naturally low caffeine-containing tea species. Food Funct 5:1175– 1185. http://doi.org/10.1039/c3fo60720h 13. Lin X, Chen Z, Zhang Y et al (2014) Interactions among chemical components of Cocoa tea (Camellia ptilophylla Chang), a naturally low caffeine-containing tea species. Food Funct 5:1175– 1185. http://doi.org/10.1039/c3fo60720h 14. Ma Y, Chen Y (1996) Analysis of catechins and purine alkaloids in tea plants by high performance liquid chromatography. Journal of Zhongkai Agrotechnical College:70–75. 14. Ma Y, Chen Y (1996) Analysis of catechins and purine alkaloids in tea plants by high performance liquid chromatography. Journal of Zhongkai Agrotechnical College:70–75. 15. Ma Y, Zhang R (1984) Preliminary study on purine bases in Camellia ptilophylla Chang (Abstract). ACTA Scientiarum Naturalium Universitatis Sunyatseni:124. 15. Ma Y, Zhang R (1984) Preliminary study on purine bases in Camellia ptilophylla Chang (Abstract). ACTA Scientiarum Naturalium Universitatis Sunyatseni:124. 16. Peng L, Song X, Shi X et al (2008) An improved HPLC method for simultaneous determination of phenolic compounds, purine alkaloids and theanine in Camellia species. J Food Compos Anal 21:559–563. http://doi.org/10.1016/j.jfca.2008.05.002 16. Peng L, Song X, Shi X et al (2008) An improved HPLC method for simultaneous determination of phenolic compounds, purine alkaloids and theanine in Camellia species. J Food Compos Anal 21:559–563. http://doi.org/10.1016/j.jfca.2008.05.002 17. 41:31–39. Peng L, Wang X, Shi X et al (2011) Characterization of the constituents and antioxidative activity of cocoa tea (Camellia ptilophylla). Food Chem 129 17. Peng L, Wang X, Shi X et al (2011) Characterization of the constituents and antioxidative activity of cocoa tea (Camellia ptilophylla). Food Chem 129 18. Smit HJ(2011)Theobromine and the pharmacology of cocoa,vol 200,pp 201–234. 18. Smit HJ(2011)Theobromine and the pharmacology of cocoa,vol 200,pp 201–234. 19. Tang G, Meng X, Gan R et al (2019) Health Functions and Related Molecular Mechanisms of Tea Components: An Update Review. Int J Mol Sci 20 http://doi.org/10.3390/ijms20246196 19. Tang G, Meng X, Gan R et al (2019) Health Functions and Related Molecular Mechanisms of Tea Components: An Update Review. Int J Mol Sci 20 http://doi.org/10.3390/ijms20246196 20. Tea — Determination of water extract(1994)Tea — Determination of water extract.ISO 9768 20. Tea — Determination of water extract(1994)Tea — Determination of water extract.ISO 9768 20. Tea — Determination of water extract(1994)Tea — Determination of wate 21. Xu S, Wang X, Guo W et al (1990) The study on pharmacological effect of extracts from Camellia ptilophylla Chang. ACTA Scientiarum Naturalium Universitatis Sunyatseni 29:185–189. 21. Xu S, Wang X, Guo W et al (1990) The study on pharmacological effect of extracts from Camellia ptilophylla Chang. ACTA Scientiarum Naturalium Universitatis Sunyatseni 29:185–189. 22. Yang XR, Ye CX, Xu JK et al (2007) Simultaneous analysis of purine alkaloids and catechins in Camellia sinensis, Camellia ptilophylla and Camellia assamica var. kucha by HPLC. Food Chem 100:1132–1136. http://doi.org/10.1016/j.foodchem.2005.11.021 22. Yang XR, Ye CX, Xu JK et al (2007) Simultaneous analysis of purine alkaloids and catechins in Camellia sinensis, Camellia ptilophylla and Camellia assamica var. kucha by HPLC. Food Chem 100:1132–1136. http://doi.org/10.1016/j.foodchem.2005.11.021 23. Zhang H (1981) Thea–A Section of beveragial Tea-Trees of the Genus Camellia. ACTA Scientiarum Naturalium Universitatis Sunyatseni:89–101. 23. Zhang H (1981) Thea–A Section of beveragial Tea-Trees of the Genus Camellia. ACTA Scientiarum Naturalium Universitatis Sunyatseni:89–101. References 1. Determination of substances characteristic of green and black tea(2005) — Part 1: Content of total polyphenols in tea — Colorimetric method using Folin-Ciocalteu reagent.ISO 14502-1 2. Determination of substances characteristic of green and black tea(2005) — Part 2: Content of catechins in green tea - Method using high-performance liquid chromatography.ISO 14502-2. 3. Fukui Y, Nakai M, Asami S. (2005). Lipase inhibitorNo. EP20050780412. 4. Gao K, Wang D, Zhao Y et al (2004) Variation of main chemical ingredients in cocoa tea after cultivation and comparison with traditional tea. Natural Product Research And Development:552– 556. 5. Gao X, Li X, Ho C et al (2020) Cocoa tea (Camellia ptilophylla) induces mitochondria-dependent apoptosis in HCT116 cells via ROS generation and PI3K/Akt signaling pathway. Food Res Int 129 http://doi.org/10.1016/j.foodres.2019.108854 6. Gao X, Lin X, Li X et al (2017) Cellular antioxidant, methylglyoxal trapping, and anti-inflammatory activities of cocoa tea (Camellia ptilophylla Chang). Food Funct 8:2836–2846. http://doi.org/10.1039/C7FO00368D 6. Gao X, Lin X, Li X et al (2017) Cellular antioxidant, methylglyoxal trapping, and anti-inflammatory activities of cocoa tea (Camellia ptilophylla Chang). Food Funct 8:2836–2846. http://doi.org/10.1039/C7FO00368D 7. He Y, Peng L, Li C et al (2011) Research on the biochemical ingredients of cultivated varieties of Cocoa tea. Guangdong Agricultural Sciences:10–13. 7. He Y, Peng L, Li C et al (2011) Research on the biochemical ingredients of cultivated varieties of Cocoa tea. Guangdong Agricultural Sciences:10–13. 8. Kuang X, Gao X, Lin X et al (2020) Isolation, purification and antioxidant activities of three kinds of polyphenol monomers from Camellia ptilophylla Chang. Science and Technology of Food Industry 8. Kuang X, Gao X, Lin X et al (2020) Isolation, purification and antioxidant activities of three kinds of polyphenol monomers from Camellia ptilophylla Chang. Science and Technology of Food Industry Page 10/15 Page 10/15 41:31–39. 41:31–39. Figures Page 11/15 Figure 1 Figure 1 Chemical structure of 14 tea polyphenols and methylxanthines Page 12/15 Page 12/15 Page 12/15 Figure 2 HPLC chromatograms of standards (A), C. ptilophylla (B), and C. sinensis(C) Peak 1-14 denoted orderly as GA, Tb, Tp, GC, Caf, EGC, C, EC, EGCG, GCG, ECG, 3 5 diGA Figure 3 Standard curves of 14 bioactive compounds Standard curves of 14 bioactive compounds (A) for GA, Tb, Tp, and Caf ranges from 1.25 μg/mL to 40 μg/mL; (B) for CG, ECG, 1,2,4,6-GA-glc, and GC- 3,5-diGA of 5-160 μg/mL; (C) for C, EC, GCG, EGCG of 5-160 μg/mL; (D) for GC and EGC from 10 μg/mL to 320 μg/mL. (A) for GA, Tb, Tp, and Caf ranges from 1.25 μg/mL to 40 μg/mL; (B) for CG, ECG, 1,2,4,6-GA-glc, and GC- 3,5-diGA of 5-160 μg/mL; (C) for C, EC, GCG, EGCG of 5-160 μg/mL; (D) for GC and EGC from 10 μg/mL to 320 μg/mL. Figure 4 Percentage of 14 bioactive compounds in total water extracts of green tea from C. ptilophylla and six typical teas from C. sineneis Page 14/15 Figure 2 Figure 2 HPLC chromatograms of standards (A), C. ptilophylla (B), and C. sinensis(C) Peak 1-14 denoted orderly as GA, Tb, Tp, GC, Caf, EGC, C, EC, EGCG, GCG, ECG, 1,2,4,6-GA-glc, CG, and GC- Peak 1-14 denoted orderly as GA, Tb, Tp, GC, Caf, EGC, C, EC, EGCG, GCG, ECG, 1,2,4,6-GA-glc, CG, and GC- 3,5-diGA. Page 13/15 Page 13/15 Page 13/15 Figure 3 Standard curves of 14 bioactive compounds (A) for GA, Tb, Tp, and Caf ranges from 1.25 μg/mL to 40 μg/mL; (B) for CG, ECG, 1,2,4,6-GA-glc, and GC- 3,5-diGA of 5-160 μg/mL; (C) for C, EC, GCG, EGCG of 5-160 μg/mL; (D) for GC and EGC from 10 μg/mL to 320 μg/mL. Page 14/15 Page 14/15 Figure 5 Differences in the content of 14 bioactive compounds in different green teas from C. ptilophylla Differences in the content of 14 bioactive compounds in different green teas from C. ptilophylla Page 15/15
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ERROR: type should be string, got "https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Soil carbon loss in warmed subarctic grasslands is rapid and\nrestricted to topsoil Niel Verbrigghe1, Niki I. W. Leblans1,2, Bjarni D. Sigurdsson3, Sara Vicca1, Chao Fang1,4,5,\nLucia Fuchslueger1,6, Jennifer L. Soong1,7, James T. Weedon8, Christopher Poeplau9,\nCristina Ariza-Carricondo1, Michael Bahn10, Bertrand Guenet11, Per Gundersen12, Gunnhildur E. Gunnarsdóttir13, Thomas Kätterer14, Zhanfeng Liu15, Marja Maljanen16, Sara Marañón-Jiménez17,18,\nKathiravan Meeran10, Edda S. Oddsdóttir19, Ivika Ostonen20, Josep Peñuelas17,18, Andreas Richter6,21,\nJordi Sardans17,18, Páll Sigurðsson3, Margaret S. Torn22, Peter M. Van Bodegom23, Erik Verbruggen1,\nTom W. N. Walker24, Håkan Wallander25, and Ivan A. Janssens1 Niel Verbrigghe1, Niki I. W. Leblans1,2, Bjarni D. Sigurdsson3, Sara Vicca1, Chao Fang1,4,5, 1Research Group Plants and Ecosystems, University of Antwerp, Antwerp, Belgium. 2 2Climate Impacts Research Centre, Umeå University, Umeå, Sweden. 3Agricultural University of Iceland, Hvanneyri, Borgarnes, Iceland. 4Institute of Ecology, School of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing,\nChina. 4Institute of Ecology, School of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing,\nChina. 5State Key Laboratory of Grassland Agro-ecosystems, Institute of Arid Agroecology, School of Life Sciences, Lanzhou 5State Key Laboratory of Grassland Agro-ecosystems, Institute of Arid Agroecology, School of Life Sciences, Lanzhou\nUniversity, Lanzhou, China 5State Key Laboratory of Grassland Agro-ecosystems, Institute of Arid Agroecology, School of Life Sciences, Lanzhou\nUniversity, Lanzhou, China. y\n6Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria 6Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Au 7Soil and Crop Sciences Department, Colorado State University, Fort Collins, Colorado, USA. p\np\ny\n8Systems Ecology, Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. 9 Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. 8Systems Ecology, Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam 9Thünen Institute of Climate-Smart Agriculture, Braunschweig, Germany 10Department of Ecology, University of Innsbruck, Innsbruck, Austria. 11Laboratoire de Géologie, École normale supérieure/CNRS, PSL Research University, Paris, France. Laboratoire de Géologie, École normale supérieure/CNRS, PSL Research University, Paris, France 12Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark. 13Soil Conservation Service of Iceland, Gunnarsholt, Hella, Iceland. 14 Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederi Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark. 13Soil Conservation Service of Iceland, Gunnarsholt, Hella, Iceland. p\ng\ny\np\ng\ng\n13Soil Conservation Service of Iceland, Gunnarsholt, Hella, Iceland. 13Soil Conservation Service of Iceland, Gunnarsholt, Hella, Iceland. Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden. Correspondence: Niel Verbrigghe (Niel.Verbrigghe@UAntwerpen.be) Soil carbon loss in warmed subarctic grasslands is rapid and\nrestricted to topsoil This rapid equilibration of SOC\nobserved in Andosol suggests a critical role for ecosystem adaptations to warming and could imply short-lived soil carbon-\nclimate feedbacks. Our data further revealed that the soil C loss occurred in all aggregate size fractions, and that SOC losses\nonly occurred in topsoil (0-10 cm). SOC stocks in subsoil (10-30 cm), where plant roots were absent, remained unaltered, even after >50 years of warming. The observed depth-dependent warming responses indicate that explicit vertical resolution is a\n10\nprerequisite for global models to accurately project future SOC stocks for this soil type and should be investigated for soils\nwith other mineralogies. after >50 years of warming. The observed depth-dependent warming responses indicate that explicit vertical resolution is a\n10\nprerequisite for global models to accurately project future SOC stocks for this soil type and should be investigated for soils\nwith other mineralogies. Soil carbon loss in warmed subarctic grasslands is rapid and\nrestricted to topsoil 14Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden. 15Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems & CAS Engineering Laboratory for\nVegetation Ecosystem Restoration on Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of\nSciences, Guangzhou, China. partment of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland 17CREAF, Cerdanyola del Vallès, Barcelona, Catalonia, Spain. 18CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Barcelona, Spain. 19Icelandic Forest Research, Mógilsá, Reykjavík, Iceland. 20Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia 21International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria. 22Climate and Ecosystem Sciences Division, Berkeley Lab, Berkeley, CA, USA. 23Environmental Biology Department, Institute of Environmental Sciences, CML, Leiden University, Leiden, The\nNetherlands. 23Environmental Biology Department, Institute of Environmental Sciences, CML, Leiden University, Leiden, The\nNetherlands. 24Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland. 25MEMEG, Department of Biology, Lund University, Lund, Sweden. Correspondence: Niel Verbrigghe (Niel.Verbrigghe@UAntwerpen.be) Correspondence: Niel Verbrigghe (Niel.Verbrigghe@UAntwerpen.be) 1 1 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Abstract. Global warming may lead to carbon transfers from soils to the atmosphere, yet this positive feedback to the cli-\nmate system remains highly uncertain, especially in subsoils (Ilyina and Friedlingstein, 2016; Shi et al., 2018). Using natural\ngeothermal soil warming gradients of up to +6.4 ◦C in subarctic grasslands (Sigurdsson et al., 2016), we show that soil organic\ncarbon (SOC) stocks decline strongly and linearly with warming (−2.8 ton ha−1 ◦C−1). Comparison of SOC stock changes following medium-term (5 and 10 years) and long-term (>50 years) warming revealed that all SOC loss occurred within the\n5\nfirst five years of warming, after which continued warming no longer reduced SOC stocks. This rapid equilibration of SOC\nobserved in Andosol suggests a critical role for ecosystem adaptations to warming and could imply short-lived soil carbon-\nclimate feedbacks. Our data further revealed that the soil C loss occurred in all aggregate size fractions, and that SOC losses\nonly occurred in topsoil (0-10 cm). SOC stocks in subsoil (10-30 cm), where plant roots were absent, remained unaltered, even following medium-term (5 and 10 years) and long-term (>50 years) warming revealed that all SOC loss occurred within the\n5\nfirst five years of warming, after which continued warming no longer reduced SOC stocks. 1\nIntroduction Soils store more carbon (C) than the atmosphere and vegetation biomass combined (Batjes, 2 Soils store more carbon (C) than the atmosphere and vegetation biomass combined (Batjes, 2016; Scharlemann et al., 2014). Global warming has been hypothesised to lead to increased soil CO2 emissions that may lead to large reductions in soil organic\n15\ncarbon (SOC) stocks, constituting a positive feedback to the climate system (Davidson and Janssens, 2006; Jenkinson et al.,\n1991). The strength and even sign of this carbon cycle-climate feedback are, however, highly uncertain (Crowther et al., 2016;\nTodd-Brown et al., 2018; van Gestel et al., 2018). Accordingly, the World Climate Research Programme has acknowledged it\nas one of the \"Grand Challenges\" of climate research (Ilyina and Friedlingstein, 2016). 15 In situ soil warming studies provide ideal tools to study the response of soil SOC stocks to warming (Batjes, 2016), yet\n20\nchallenges remain great. First, ecosystem responses to warming may take decades to stabilise (Walker et al., 2020; Melillo\net al., 2017), implying that extrapolations of responses from-, or model parametrisation based on short-term experiments\nmay lead to erroneous estimation of the future evolution of SOC stocks. Second, SOC stock changes are rarely studied in\nsubsoils. The high cost and labour requirements of SOC research, combined with the fact that most biological activity and In situ soil warming studies provide ideal tools to study the response of soil SOC stocks to warming (Batjes, 2016), yet\n20\nchallenges remain great. First, ecosystem responses to warming may take decades to stabilise (Walker et al., 2020; Melillo\net al., 2017), implying that extrapolations of responses from-, or model parametrisation based on short-term experiments\nmay lead to erroneous estimation of the future evolution of SOC stocks. Second, SOC stock changes are rarely studied in\nsubsoils. The high cost and labour requirements of SOC research, combined with the fact that most biological activity and In situ soil warming studies provide ideal tools to study the response of soil SOC stocks to warming (Batjes, 2016), yet\n20\nchallenges remain great. First, ecosystem responses to warming may take decades to stabilise (Walker et al., 2020; Melillo\net al., 2017), implying that extrapolations of responses from-, or model parametrisation based on short-term experiments\nmay lead to erroneous estimation of the future evolution of SOC stocks. Second, SOC stock changes are rarely studied in\nsubsoils. 1\nIntroduction The high cost and labour requirements of SOC research, combined with the fact that most biological activity and SOC mineralisation occur in topsoils, explains why soil biology and ecology, including SOC cycling, are rarely studied below\n25\na depth of 20-30 cm (Yost and Hartemink, 2020). This is a major issue, because more SOC is stored below this threshold\nthan above (Shi et al., 2020) and therefore the carbon cycle-climate feedback does not stop at 20-30 cm depth. Unfortunately,\nthe very few soil warming experiments that also warmed subsoils and quantified SOC stock changes yielded very different\nwarming responses, ranging from declining to increasing subsoil SOC stocks (Soong et al., 2020a; Hanson et al., 2020). SOC mineralisation occur in topsoils, explains why soil biology and ecology, including SOC cycling, are rarely studied below\n25\na depth of 20-30 cm (Yost and Hartemink, 2020). This is a major issue, because more SOC is stored below this threshold\nthan above (Shi et al., 2020) and therefore the carbon cycle-climate feedback does not stop at 20-30 cm depth. Unfortunately,\nthe very few soil warming experiments that also warmed subsoils and quantified SOC stock changes yielded very different\nwarming responses, ranging from declining to increasing subsoil SOC stocks (Soong et al., 2020a; Hanson et al., 2020). SOC mineralisation occur in topsoils, explains why soil biology and ecology, including SOC cycling, are rarely studied below\n25\na depth of 20-30 cm (Yost and Hartemink, 2020). This is a major issue, because more SOC is stored below this threshold\nthan above (Shi et al., 2020) and therefore the carbon cycle-climate feedback does not stop at 20-30 cm depth. Unfortunately,\nthe very few soil warming experiments that also warmed subsoils and quantified SOC stock changes yielded very different\nwarming responses, ranging from declining to increasing subsoil SOC stocks (Soong et al., 2020a; Hanson et al., 2020). To address both these challenges, we determined SOC stock changes along natural geothermal gradients at the ForHot\n30\nresearch site in Iceland (Sigurdsson et al., 2016) encompassing the full warming range projected for Northern regions (up\nto +6.4 ◦C), throughout the topsoil (0-10 cm) and the subsoil (10-30 cm). 1\nIntroduction We further hypothesised similar subsoil and topsoil SOC loss, given that subsoils were exposed to the same\nwarming intensity and duration as topsoils. soils would still be losing SOC over time, while the long-term warmed soils would have reached a new equilibrium at lower\n45\nSOC content. We further hypothesised similar subsoil and topsoil SOC loss, given that subsoils were exposed to the same\nwarming intensity and duration as topsoils. 1\nIntroduction 35\nNext to measuring SOC stocks, we gathered data about soil aggregates, carbon inputs to the soil by plants and arbuscular\nmycorrhizal fungi and carbon flux from topsoil to subsoil. This allowed us to elaborate about the possible mechanisms behind\nSOC stock changes along the warming gradient. The recently warmed grassland we investigated at the ForHot site has been warmed since 2008 when a major earthquake The recently warmed grassland we investigated at the ForHot site has been warmed since 2 The recently warmed grassland we investigated at the ForHot site has been warmed since 2008, when a major earthquake\nshifted geothermal systems to previously unwarmed soils, causing increased temperature in the soil above by radiative heating\n40\n(Halldórsson and Sigbjörnsson, 2009; O’Gorman et al., 2014). In contrast, the long-term warmed grassland had been warmed\nfor at least 45 years at the time of the earthquake in 2008 (Sigurdsson et al., 2016). The soil type on both study sites is Andosol,\nand they are covered by the same grassland type (Sigurdsson et al., 2016). W h\nth\ni\nd th t b\nf th\nl\nti\nf\nt\nt d SOC\nl t\nt\nt\nh\ndi\nt\nd shifted geothermal systems to previously unwarmed soils, causing increased temperature in the soil above by radiative heating\n40\n(Halldórsson and Sigbjörnsson, 2009; O’Gorman et al., 2014). In contrast, the long-term warmed grassland had been warmed\nfor at least 45 years at the time of the earthquake in 2008 (Sigurdsson et al., 2016). The soil type on both study sites is Andosol,\nand they are covered by the same grassland type (Sigurdsson et al., 2016). We hypothesised that because of the slow reaction of protected SOC pools to temperature change, medium-term warmed We hypothesised that because of the slow reaction of protected SOC pools to temperature change, medium-term warmed\nsoils would still be losing SOC over time, while the long-term warmed soils would have reached a new equilibrium at lower\n45\nSOC content. We further hypothesised similar subsoil and topsoil SOC loss, given that subsoils were exposed to the same\nwarming intensity and duration as topsoils. soils would still be losing SOC over time, while the long-term warmed soils would have reached a new equilibrium at lower\n45\nSOC content. 1\nIntroduction We compared topsoil and subsoil SOC dynamics\nalong replicate warming gradients exposed to medium-term (5 and 10 years) and long-term (>50 years, but possibly centuries) To address both these challenges, we determined SOC stock changes along natural geothermal gradients at the ForHot\n30\nresearch site in Iceland (Sigurdsson et al., 2016) encompassing the full warming range projected for Northern regions (up\nto +6.4 ◦C), throughout the topsoil (0-10 cm) and the subsoil (10-30 cm). We compared topsoil and subsoil SOC dynamics\nalong replicate warming gradients exposed to medium-term (5 and 10 years) and long-term (>50 years, but possibly centuries) To address both these challenges, we determined SOC stock changes along natural geothermal gradients at the ForHot\n30\nresearch site in Iceland (Sigurdsson et al., 2016) encompassing the full warming range projected for Northern regions (up\nto +6.4 ◦C), throughout the topsoil (0-10 cm) and the subsoil (10-30 cm). We compared topsoil and subsoil SOC dynamics\nalong replicate warming gradients exposed to medium-term (5 and 10 years) and long-term (>50 years, but possibly centuries) 2 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. warming by sampling permanent study plots twice in a six-year period (2013 and 2018). This enabled us to characterise the warming by sampling permanent study plots twice in a six-year period (2013 and 2018). This enabled us to characterise the\nmagnitude, shape and temporal dynamics of the temperature response of SOC stocks in these northern, non-permafrost, soils. 35\nNext to measuring SOC stocks, we gathered data about soil aggregates, carbon inputs to the soil by plants and arbuscular\nmycorrhizal fungi and carbon flux from topsoil to subsoil. This allowed us to elaborate about the possible mechanisms behind warming by sampling permanent study plots twice in a six-year period (2013 and 2018). This enabled us to characterise the\nmagnitude, shape and temporal dynamics of the temperature response of SOC stocks in these northern, non-permafrost, soils. 35\nNext to measuring SOC stocks, we gathered data about soil aggregates, carbon inputs to the soil by plants and arbuscular\nmycorrhizal fungi and carbon flux from topsoil to subsoil. This allowed us to elaborate about the possible mechanisms behind\nSOC stock changes along the warming gradient. magnitude, shape and temporal dynamics of the temperature response of SOC stocks in these northern, non-permafrost, soils. 2\nLarge, linear and fast topsoil SOC loss Topsoil (0-10 cm; comprising the A horizon and rooting zone) SOC stocks linearly declined by 2 Topsoil (0-10 cm; comprising the A horizon and rooting zone) SOC stocks linearly declined by 2.8 ± 0.5 (± SE) ton SOC ha−1 ◦C−1\nsoil warming (or 8.8 ± 2.1 ◦C−1; both P < 0.001) for mass-corrected SOC stocks (fig. 1a, 2). These topsoil temperature re-\n50\nsponses did not differ between the medium-term and the long-term warmed grassland, i.e., the warming:grassland interaction\nterm was not significant (P = 0.47). This clearly suggests that warming induced SOC losses only during the initial five years of\nexposure and that SOC stocks did not change thereafter. However, several sources of variation such as sampling errors and the large heterogeneity inherent to soils, induced quite soil warming (or 8.8 ± 2.1 ◦C−1; both P < 0.001) for mass-corrected SOC stocks (fig. 1a, 2). These topsoil temperature re-\n50\nsponses did not differ between the medium-term and the long-term warmed grassland, i.e., the warming:grassland interaction\nterm was not significant (P = 0.47). This clearly suggests that warming induced SOC losses only during the initial five years of\nexposure and that SOC stocks did not change thereafter. However, several sources of variation such as sampling errors and the large heterogeneity inherent to soils, induced quite broad uncertainty intervals that reduced the potential to detect statistically significant changes in SOC stocks or in their tempera-\n55\nture response. Hence, to demonstrate that the warming-induced SOC stock loss had indeed stabilised within five years of warm-\ning and did not further loose SOC, we calculated what SOC stock decline could have remained undetected given the variability\nin our samples using a one-sided 95 % confidence interval on the soil warming regression coefficient. This shows that average\nadditional SOC stock losses smaller than 0.88 ton C ha−1 ◦C−1 would not have been detected at p<0.05, implying that in the five year period following the initial warming response (i.e., 2013-2018), annual declines of up to 0.18 ton C ha−1 ◦C−1 year−1 would\n60\nhave remained undetected. In the subsequent time span of >50 years, only changes smaller than 0.018 ton C ha−1 ◦C−1 year−1\nwould have remained undetected, i.e., a rate 30-fold less than the SOC loss observed in the initial 5 years of soil warming. 2\nLarge, linear and fast topsoil SOC loss Also when not corrected for warming-induced density changes, SOC stocks and soil C concentrations declined with warming\n(fig. B1; fig. B2) and did not further decrease after five years of soil warming. In contrast to our hypothesis, our data thus\nrevealed that in topsoil, a stepwise increase in temperature caused a fast SOC stock loss that stabilised within five years of\n65 year period following the initial warming response (i.e., 2013-2018), annual declines of up to 0.18 ton C ha−1 ◦C−1 year−1 would\n60\nhave remained undetected. In the subsequent time span of >50 years, only changes smaller than 0.018 ton C ha−1 ◦C−1 year−1\nwould have remained undetected, i.e., a rate 30-fold less than the SOC loss observed in the initial 5 years of soil warming. Also when not corrected for warming induced density changes SOC stocks and soil C concentrations declined with warming 3 3 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. warming, despite the sustained higher temperatures. Even grasslands that had been warmed at least 55 years exhibited no\nlarger SOC loss than that observed after 5 years of soil warming. warming, despite the sustained higher temperatures. Even grasslands that had been warmed at least 55 years exhibited no\nlarger SOC loss than that observed after 5 years of soil warming. y = −2.8x + 32.1\nR² = 0.29; P < 0.001\na)\nP = 0.63\nb)\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n10\n20\n30\n40\n50\n10\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock (ton C ha−1)\nYr−grassland\n2013 − LTW\n2013 − MTW\n2018 − LTW\n2018 − MTW\nFigure 1. Soil organic carbon (SOC) stocks (ton C ha−1) along soil warming gradients, a) in the topsoil (0-10 cm) and b) in the subsoil\n(10-30 cm) after a soil mass correction. The regression (solid line; dashed lines represent the 95 % confidence interval; regression details\nprovided in the inset) for medium-term warmed (MTW) and long-term warmed (LTW) grassland (in topsoil) for both 2013 and 2018 were\ncombined, since no soil temperature x warming-duration interaction effect, nor a main effect for warming-duration or sampling year was\nfound. The soil mass correction is visualised in fig. B8. The uncorrected SOC stocks yield qualitatively similar conclusions (fig. B1), as did\nthe C percentage in top- and subsoil (fig. B2). 2\nLarge, linear and fast topsoil SOC loss https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. 0\n5\n10\n>50\n>55\n0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\nYears of warming\nSoil warming category\n15\n20\n25\n30\nSOC stocks\n(kg ha−1)\n0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\n10\n20\n30\n40\n50\n0\n5\n10\n>50\n>55\nYears of warming\nSOC stock (ton ha−1)\nFigure 2. Warming effect on topsoil (0-10 cm) SOC stocks, as observed during repeated sampling campaigns. Stocks after 5 and 10 years\nof warming are sampled in the medium-term warmed grasslands, stocks after >50 and >55 years in the long-term warmed grasslands. The\ndata at the start of warming is interpolated from the ambient plots in grasslands combined. Soils are divided in four warming categories for\nrepresentation. The colours on the heatmap and the smoother lines are based on a linear regression equation per sampling event. 0\n5\n10\n>50\n>55\n0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\nYears of warming\nSoil warming category\n15\n20\n25\n30\nSOC stocks\n(kg ha−1) Years of warming 0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\n10\n20\n30\n40\n50\n0\n5\n10\n>50\n>55\nYears of warming\nSOC stock (ton ha−1) Years of warming Figure 2. Warming effect on topsoil (0-10 cm) SOC stocks, as observed during repeated sampling campaigns. Stocks after 5 and 10 years\nof warming are sampled in the medium-term warmed grasslands, stocks after >50 and >55 years in the long-term warmed grasslands. The\ndata at the start of warming is interpolated from the ambient plots in grasslands combined. Soils are divided in four warming categories for\nrepresentation. The colours on the heatmap and the smoother lines are based on a linear regression equation per sampling event. Figure 2. Warming effect on topsoil (0-10 cm) SOC stocks, as observed during repeated sampling campaigns. Stocks after 5 and 10 years\nof warming are sampled in the medium-term warmed grasslands, stocks after >50 and >55 years in the long-term warmed grasslands. The\ndata at the start of warming is interpolated from the ambient plots in grasslands combined. Soils are divided in four warming categories for\nrepresentation. The colours on the heatmap and the smoother lines are based on a linear regression equation per sampling event. 2\nLarge, linear and fast topsoil SOC loss (n = 78 & 40 for topsoil and subsoil respectively) y = −2.8x + 32.1\nR² = 0.29; P < 0.001\na)\nP = 0.63\nb)\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n10\n20\n30\n40\n50\n10\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock (ton C ha−1)\nYr−grassland\n2013 − LTW\n2013 − MTW\n2018 − LTW\n2018 − MTW Figure 1. Soil organic carbon (SOC) stocks (ton C ha−1) along soil warming gradients, a) in the topsoil (0-10 cm) and b) in the subsoil\n(10-30 cm) after a soil mass correction. The regression (solid line; dashed lines represent the 95 % confidence interval; regression details\nprovided in the inset) for medium-term warmed (MTW) and long-term warmed (LTW) grassland (in topsoil) for both 2013 and 2018 were\ncombined, since no soil temperature x warming-duration interaction effect, nor a main effect for warming-duration or sampling year was\nfound. The soil mass correction is visualised in fig. B8. The uncorrected SOC stocks yield qualitatively similar conclusions (fig. B1), as did\nthe C percentage in top- and subsoil (fig. B2). (n = 78 & 40 for topsoil and subsoil respectively) Figure 1. Soil organic carbon (SOC) stocks (ton C ha−1) along soil warming gradients, a) in the topsoil (0-10 cm) and b) in the subsoil\n(10-30 cm) after a soil mass correction. The regression (solid line; dashed lines represent the 95 % confidence interval; regression details\nprovided in the inset) for medium-term warmed (MTW) and long-term warmed (LTW) grassland (in topsoil) for both 2013 and 2018 were\ncombined, since no soil temperature x warming-duration interaction effect, nor a main effect for warming-duration or sampling year was\nfound. The soil mass correction is visualised in fig. B8. The uncorrected SOC stocks yield qualitatively similar conclusions (fig. B1), as did\nthe C percentage in top- and subsoil (fig. B2). (n = 78 & 40 for topsoil and subsoil respectively) 4 4 0\n5\n10\n>50\n>55\n0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\nYears of warming\nSoil warming category\n15\n20\n25\n30\nSOC stocks\n(kg ha−1)\n0−1.4°C\n1.4−2.7°C\n2.7−4.1°C\n4.1−5.5°C\n10\n20\n30\n40\n50\n0\n5\n10\n>50\n>55\nYears of warming\nSOC stock (ton ha−1)\nFigure 2. Warming effect on topsoil (0-10 cm) SOC stocks, as observed during repeated sampling campaigns. Stocks after 5 and 10 years\nhttps://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. 2\nLarge, linear and fast topsoil SOC loss of warming are sampled in the medium-term warmed grasslands, stocks after >50 and >55 years in the lon\ndata at the start of warming is interpolated from the ambient plots in grasslands combined. Soils are divided\nrepresentation. The colours on the heatmap and the smoother lines are based on a linear regression equation To gain insight in the warming-induced soil physical changes and their effects on SOC stocks, soils were fractionated\ninto different size classes that were analysed separately (see Methods). Aggregate fractionation showed that with increasing o ga\ns g t\nt e wa\ng\nduced so\np ys ca c a ges a d t e\ne ects o\nSOC stoc s, so s we e\nact o ated\ninto different size classes that were analysed separately (see Methods). Aggregate fractionation showed that with increasing\nwarming intensity, the mass of >2 mm fraction declined significantly, in favour of the >250 µm and >63 µm fractions. No\n70\nsignificant change was detected in the mass of the smallest (<63 µm) fraction (fig. 3). Opposed to this contrasting response of\nrelative mass, all soil fractions exhibited similar soil C % declines with soil warming (fig. 3). The relative mass increase of the\nsmaller fractions was compensated for by the soil C % decline, resulting in a stable amount of C in the >250 µm and >63 µm\nfractions. As a result, all of the warming-induced SOC stock decline we observed in the bulk soil, was attributable to C losses\nin the >2 mm fraction. 75 70 5 5 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. MTW\nLTW\nRel. mass (%)\nSoil C (%)\nSoil C (g C 100 g−1 dw soil)\n0\n5\n10\n15\n20 0\n5\n10\n15\n20\n0\n20\n40\n60\n2\n4\n6\n0\n1\n2\n3\n4\nSoil warming (°C)\nFraction\n>2mm\n>250µm\n>63µm\n<63µm\nigure 3. Relative mass, soil C % and absolute soil C amount of soil aggregate fractions originating from topsoil in the medium-term warmed\nMTW) and long-term warmed (LTW) grassland. Darker lines indicate smaller fractions. Fractions significantly affected by soil warming\nre represented with solid lines, non-significant relations upon soil warming are shown with dashed lines. (n = 17 & 16 for each fraction in\nMTW and LTW grassland respectively) MTW\nLTW\nRel. 3\nStable subsoil SOC stocks Higher subsoil than topsoil SOC losses were reported in two forests (Lin et al., 2018;\nSoong et al., 2020a), while unresponsive (this study) subsoil SOC stocks or even increases in subsoil SOC stocks were observed in grasslands (Jia et al., 2019). Further research is needed to unravel the drivers of these contrasting subsoil SOC responses to\n105\nwarming among experiments, which may be related to differences in soil properties, aggregate dynamics or rooting depths. in grasslands (Jia et al., 2019). Further research is needed to unravel the drivers of these contrasting subsoil SOC responses to\n105\nwarming among experiments, which may be related to differences in soil properties, aggregate dynamics or rooting depths. 2\nLarge, linear and fast topsoil SOC loss Aggregate fractionation suggests C % all size\n85\nfractions were impacted similarly by warming (fig. 3). This likely indicates both particulate organic matter, often occluded in\nlarge-size aggregates, and mineral-associated organic matter, present in all aggregate sizes, decreased with warming. affected by more intense (>9 ◦C) long-term warming (Radujkovi´c et al., 2018). Aggregate fractionation suggests C % all size\n85\nfractions were impacted similarly by warming (fig. 3). This likely indicates both particulate organic matter, often occluded in\nlarge-size aggregates, and mineral-associated organic matter, present in all aggregate sizes, decreased with warming. affected by more intense (>9 ◦C) long-term warming (Radujkovi´c et al., 2018). Aggregate fractionation suggests C % all size\n85\nfractions were impacted similarly by warming (fig. 3). This likely indicates both particulate organic matter, often occluded in\nlarge-size aggregates, and mineral-associated organic matter, present in all aggregate sizes, decreased with warming. 2\nLarge, linear and fast topsoil SOC loss mass (%)\nSoil C (%)\nSoil C (g C 100 g−1 dw soil)\n0\n5\n10\n15\n20 0\n5\n10\n15\n20\n0\n20\n40\n60\n2\n4\n6\n0\n1\n2\n3\n4\nSoil warming (°C)\nFraction\n>2mm\n>250µm\n>63µm\n<63µm Soil warming (°C) Figure 3. Relative mass, soil C % and absolute soil C amount of soil aggregate fractions originating from topsoil in the medium-term warmed\n(MTW) and long-term warmed (LTW) grassland. Darker lines indicate smaller fractions. Fractions significantly affected by soil warming\nare represented with solid lines, non-significant relations upon soil warming are shown with dashed lines. (n = 17 & 16 for each fraction in\nMTW and LTW grassland respectively) Figure 3. Relative mass, soil C % and absolute soil C amount of soil aggregate fractions originating from topsoil in the medium-term warmed\n(MTW) and long-term warmed (LTW) grassland. Darker lines indicate smaller fractions. Fractions significantly affected by soil warming\nare represented with solid lines, non-significant relations upon soil warming are shown with dashed lines. (n = 17 & 16 for each fraction in\nMTW and LTW grassland respectively) We suggest that the rapid topsoil SOC loss observed under warming, as well as its attenuation in the medium-term, emerged\nfrom the interplay between soil microbial biomass and activity. Warming at the same study site accelerated microbial growth\nand respiration (Marañón-Jiménez et al., 2018; Walker et al., 2020), which, in the absence of increased plant inputs to soil (fig. B3), caused the initial SOC loss observed here (fig. B1a). In turn, the warming-induced SOC loss caused a decline in micro- 6 6 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. bial biomass, creating a negative feedback on microbial activity that we presume prevented further SOC loss (Walker et al.,\n80\n2018, 2020). Alternatively, ephemeral SOC loss under warming may have resulted from physiological adaptations (Allison\net al., 2010; Bradford et al., 2019) or compositional shifts (Melillo et al., 2017) in the microbial community, but we found\nno evidence this occurred here. Previous research in these grasslands showed that soil microbial carbon use efficiency (CUE)\nremained constant under short- and long-term warming (Walker et al., 2020), and microbial community composition was only g\ng (\n)\ny\np\ny\naffected by more intense (>9 ◦C) long-term warming (Radujkovi´c et al., 2018). 3\nStable subsoil SOC stocks We hypothesised that the similar warming intensity across the soil profile (fig. B4) would elicit similar declines in subsoil\nSOC stocks than those in topsoil. In contrast, SOC remained constant in the subsoil, even under 50 years of soil warming\n90\nin the long-term warmed grasslands (P = 0.63; fig. 1b, 2). This lack of SOC loss from the subsoil may be explained by\nthree, potentially co-occurring mechanisms. First, limited fresh C inputs from litter and root exudates below the rooting zone\n(<10 cm deep; fig. B3) could be a critical factor (Tian et al., 2016) explaining the lack of a positive warming effect on subsoil\ndecomposition, as a plausible positive priming effect often elicited by fresh C inputs would have been restricted to the topsoil. Second, a large fraction of SOC in the topsoil is particulate organic matter protected in aggregates, whereas most subsoil SOC\n95\nis associated with minerals (Fontaine et al., 2007; Rumpel and Kögel-Knabner, 2011). As such, by accelerating mineralisation\nof plant litter that is deposited only in topsoil (Walker et al., 2018), and thereby reducing aggregate stability and breaking\nup macroaggregates (fig. 3) (Poeplau et al., 2020), warming may have had much greater effect on SOC losses in topsoil than\nin subsoil, where mineral protection dominates. Third, although unlikely given the absence of increased dissolved organic C (DOC) with warming in subsoil (fig. B6), it can also not be excluded that SOC stocks in subsoils only appear stable, because\n100\nincreased losses are compensated for by increased inputs from above (Osher et al., 2003). Only very few studies have assessed subsoil SOC stocks responses to deep soil warming, and observed responses differ\nstrongly in magnitude and even direction. Higher subsoil than topsoil SOC losses were reported in two forests (Lin et al., 2018;\nSoong et al., 2020a), while unresponsive (this study) subsoil SOC stocks or even increases in subsoil SOC stocks were observed (DOC) with warming in subsoil (fig. B6), it can also not be excluded that SOC stocks in subsoils only appear stable, because\n100\nincreased losses are compensated for by increased inputs from above (Osher et al., 2003). Only very few studies have assessed subsoil SOC stocks responses to deep soil warming, and observed responses differ\nstrongly in magnitude and even direction. 4\nImplications for carbon-climate feedbacks Earth System Model (ESM) inter-comparison studies (Eyring et al., 2016) have revealed large variability in both contemporary\nglobal SOC stock estimates and future SOC stock projections, underlining the need for empirical observations to better con-\nstrain the response of SOC to temperature change (Nishina et al., 2014). Long-term warming experiments like this study are\n110 110 7 7 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. thus needed to reduce the uncertainty on model projections (Abramoff et al., 2019). Although geothermally active areas offer\nlong-lasting, continuous and large soil temperature gradients and overcome the technical challenges and high costs associated\nwith warming manipulation experiments (Sigurdsson et al., 2016; O’Gorman et al., 2014), their use as a proxy for climate\nchange has some drawbacks of its own, such as limited aboveground warming and a stepwise increase in soil temperature at thus needed to reduce the uncertainty on model projections (Abramoff et al., 2019). Although geothermally active areas offer\nlong-lasting, continuous and large soil temperature gradients and overcome the technical challenges and high costs associated\nwith warming manipulation experiments (Sigurdsson et al., 2016; O’Gorman et al., 2014), their use as a proxy for climate\nchange has some drawbacks of its own, such as limited aboveground warming and a stepwise increase in soil temperature at\nthe initiation of the geothermal gradient (De Boeck et al., 2015). Also the Andosol, covering only ± 0.8 % of the earth’s surface\n115\n(Baillie, 2001), makes that one should be cautious extrapolating the results to the entire sub-arctic region. Nonetheless, this\nsite offers a unique opportunity to study the direct versus long-term response of SOC stocks to temperature change and the\nresults from this study and other deep soil warming experiments clearly indicate that introducing vertically resolved plant- and\nmicrobial dynamics in ESMs is a necessity for more accurate projections of the carbon-climate feedback. the initiation of the geothermal gradient (De Boeck et al., 2015). Also the Andosol, covering only ± 0.8 % of the earth’s surface\n115\n(Baillie, 2001), makes that one should be cautious extrapolating the results to the entire sub-arctic region. 4\nImplications for carbon-climate feedbacks Nonetheless, this\nsite offers a unique opportunity to study the direct versus long-term response of SOC stocks to temperature change and the\nresults from this study and other deep soil warming experiments clearly indicate that introducing vertically resolved plant- and\nmicrobial dynamics in ESMs is a necessity for more accurate projections of the carbon-climate feedback. the initiation of the geothermal gradient (De Boeck et al., 2015). Also the Andosol, covering only ± 0.8 % of the earth’s surface\n115\n(Baillie, 2001), makes that one should be cautious extrapolating the results to the entire sub-arctic region. Nonetheless, this\nsite offers a unique opportunity to study the direct versus long-term response of SOC stocks to temperature change and the\nresults from this study and other deep soil warming experiments clearly indicate that introducing vertically resolved plant- and\nmicrobial dynamics in ESMs is a necessity for more accurate projections of the carbon-climate feedback. In conclusion, warming caused a large but rapidly equilibrating SOC loss in the topsoil that increased linearly with warming\n120\nintensity, while no SOC loss was observed in the subsoil in our subarctic grasslands exposed to decades of soil warming. Future work should focus on understanding whether these observed temporal dynamics are consistent throughout the northern\nnon-permafrost region. Improved understanding of the variation in subsoil SOC responses to warming is also critical for\nconstraining Earth System Models and obtaining reliable climate projections. In conclusion, warming caused a large but rapidly equilibrating SOC loss in the topsoil that increased linearly with warming\n120\nintensity, while no SOC loss was observed in the subsoil in our subarctic grasslands exposed to decades of soil warming. Future work should focus on understanding whether these observed temporal dynamics are consistent throughout the northern\nnon-permafrost region. Improved understanding of the variation in subsoil SOC responses to warming is also critical for\nconstraining Earth System Models and obtaining reliable climate projections. 8 8 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Appendix A: Material and methods\n125\nThis study was conducted at the ForHot research site, located in the Hengill geothermal area, 40 km east of Reykjavík, Iceland\n(64°00’01\" N, 21°11’09\" W; 100 – 225 m a.s.l. (Sigurdsson et al., 2016). Appendix A: Material and methods\n125 First in these soils, the A horizon that is enriched with SOC is maximum 10 cm deep (Arnalds,\n2015). Second, 95.7 ± 0.4 (SE) % of the fine root biomass sampled in the top 30 cm layer, was found in upper 10 cm (fig. B5). Third bulk density in subsoil is significantly higher than in topsoil (P < 0 001) (fig B7)\n135 Third, bulk density in subsoil is significantly higher than in topsoil (P < 0.001) (fig. B7). 135\nThe site comprises two areas that have been subjected to geothermal soil warming for different periods of time (Sigurdsson\net al., 2016). One area (hereafter “medium-term warmed grassland”) has been warmed since May 2008, when a large earthquake\nshifted geothermal systems to previously unwarmed soils. The second area (2.5 km North-east from the first area; hereafter\n“long-term warmed grassland”) was already mentioned to be warmed in the early 18th century (Magnússon and Vídalín, 1708) y\ng\ny\ng\np\ng\nThe site comprises two areas that have been subjected to geothermal soil warming for different periods of time (Sigurdsson\net al., 2016). One area (hereafter “medium-term warmed grassland”) has been warmed since May 2008, when a large earthquake\nshifted geothermal systems to previously unwarmed soils. The second area (2.5 km North-east from the first area; hereafter\n“long-term warmed grassland”) was already mentioned to be warmed in the early 18th century (Magnússon and Vídalín, 1708) and has thus likely been warmed for centuries. For sure, the warming was registered in a census during the 1960s, and no change\n140\nin the location of the hotspots has been recorded during the past 50 years (Kristján Sæmundsson, personal communication). The soil warming increment at both sites is relatively constant throughout the year and extreme deviations are rare (Sigurdsson\net al., 2016). Soil warming is caused by horizontal heat conduction through the soil, causing fairly homogeneous warming with\ndepth and inducing a fairly natural temperature depth profile (fig. B4). This homogeneous soil warming is in line with CMIP5 predictions of rapid transfer of the temperature signal from air to shallow and deeper soils (Soong et al., 2020b). The geothermal\n145\nwater is confined within the bedrock and no signs of soil contamination by geothermal byproducts have been found (Shi et al.,\n2020). Appendix A: Material and methods\n125 This study was conducted at the ForHot research site, located in the Hengill geothermal area, 40 km east of Reykjavík, Iceland\n(64°00’01\" N, 21°11’09\" W; 100 – 225 m a.s.l. (Sigurdsson et al., 2016). The mean annual temperature between 2006 and 2016\nwas 5.2 ± 0.1 (± SE) °C, and mean annual daily minimum and maximum temperatures were 2.2 ± 0.2 (SE) and 8.6 ± 0.2 (±\nSE) °C. The mean annual precipitation during the same period was 1413 ± 57 (± SE) mm (Icelandic Meteorological Office; Eyrarbakki weather station which closed in 2017). The main vegetation type is unmanaged grassland, dominated by Agrostris\n130\ncapillaris, Ranunculus acris and Equisetum pratense and the underlying soil is classified as Brown Andosol (Arnalds, 2015). In this study, we define the 0-10 cm layer as topsoil, and the 10-30 cm layers as subsoil. This subsoil layer strongly differed\nfrom the topsoil in many ways. First in these soils, the A horizon that is enriched with SOC is maximum 10 cm deep (Arnalds,\n2015). Second, 95.7 ± 0.4 (SE) % of the fine root biomass sampled in the top 30 cm layer, was found in upper 10 cm (fig. B5). Eyrarbakki weather station which closed in 2017). The main vegetation type is unmanaged grassland, dominated by Agrostris\n130\ncapillaris, Ranunculus acris and Equisetum pratense and the underlying soil is classified as Brown Andosol (Arnalds, 2015). In this study, we define the 0-10 cm layer as topsoil, and the 10-30 cm layers as subsoil. This subsoil layer strongly differed\nfrom the topsoil in many ways. First in these soils, the A horizon that is enriched with SOC is maximum 10 cm deep (Arnalds,\n2015). Second, 95.7 ± 0.4 (SE) % of the fine root biomass sampled in the top 30 cm layer, was found in upper 10 cm (fig. B5). Third, bulk density in subsoil is significantly higher than in topsoil (P < 0.001) (fig. B7). 135 Eyrarbakki weather station which closed in 2017). The main vegetation type is unmanaged grassland, dominated by Agrostris\n130\ncapillaris, Ranunculus acris and Equisetum pratense and the underlying soil is classified as Brown Andosol (Arnalds, 2015). In this study, we define the 0-10 cm layer as topsoil, and the 10-30 cm layers as subsoil. This subsoil layer strongly differed\nfrom the topsoil in many ways. Appendix A: Material and methods\n125 Soil pH (mean: 5.5 ± 0.1 (SE)) and soil moisture did not show major changes along the soil warming gradients, with\nsoil moisture very rarely approaching the permanent wilting point and no relation between soil temperature and the frequency\nof drought events (Leblans et al., 2017). Further, the plant species composition was very similar between the medium-term and predictions of rapid transfer of the temperature signal from air to shallow and deeper soils (Soong et al., 2020b). The geothermal\n145\nwater is confined within the bedrock and no signs of soil contamination by geothermal byproducts have been found (Shi et al.,\n2020). Soil pH (mean: 5.5 ± 0.1 (SE)) and soil moisture did not show major changes along the soil warming gradients, with\nsoil moisture very rarely approaching the permanent wilting point and no relation between soil temperature and the frequency\nof drought events (Leblans et al., 2017). Further, the plant species composition was very similar between the medium-term and the long term warmed grassland and no drastic changes in dominant plant species occurred up to +6.4 ◦C warming (Leblans\n150\net al., 2017) (which is the RCP8.5 projected annual warming level for high northern latitudes for the year 2100) (IPCC, 2013). More detailed information on the site characteristics can be found in Sigurdsson et al. (2016). We established five replicate transects in each area (the medium-term and the long-term warmed grassland) in 2012, around\ntwo and four geothermal heat sources respectively. In the medium-term warmed grassland, all transects were located on south- the long term warmed grassland and no drastic changes in dominant plant species occurred up to +6.4 ◦C warming (Leblans\n150\net al., 2017) (which is the RCP8.5 projected annual warming level for high northern latitudes for the year 2100) (IPCC, 2013). More detailed information on the site characteristics can be found in Sigurdsson et al. (2016). We established five replicate transects in each area (the medium-term and the long-term warmed grassland) in 2012, around\ntwo and four geothermal heat sources respectively. In the medium-term warmed grassland, all transects were located on south- west facing slopes, three with the geothermal heat source at the bottom of the slope, and two with the geothermal heat source\n155\nat the top, to eliminate effects of topography and downward transport of groundwater and nutrients from introducing a bias\nin the SOC stocks. 4\nImplications for carbon-climate feedbacks The mean annual temperature between 2006 and 2016\nwas 5.2 ± 0.1 (± SE) °C, and mean annual daily minimum and maximum temperatures were 2.2 ± 0.2 (SE) and 8.6 ± 0.2 (±\nSE) °C. The mean annual precipitation during the same period was 1413 ± 57 (± SE) mm (Icelandic Meteorological Office; Appendix A: Material and methods\n125\nThis study was conducted at the ForHot research site, located in the Hengill geothermal area, 40 km east of Reykjavík, Iceland\n(64°00’01\" N, 21°11’09\" W; 100 – 225 m a.s.l. (Sigurdsson et al., 2016). The mean annual temperature between 2006 and 2016\nwas 5.2 ± 0.1 (± SE) °C, and mean annual daily minimum and maximum temperatures were 2.2 ± 0.2 (SE) and 8.6 ± 0.2 (±\nSE) °C. The mean annual precipitation during the same period was 1413 ± 57 (± SE) mm (Icelandic Meteorological Office; Appendix A: Material and methods\n125 In the long-term warmed grassland, all transects were located on level ground. Within the long-term and\nmedium-term warmed grassland, all measurement plots had similar microtopography, soil depth and grazing history. west facing slopes, three with the geothermal heat source at the bottom of the slope, and two with the geothermal heat source\n155\nat the top, to eliminate effects of topography and downward transport of groundwater and nutrients from introducing a bias\nin the SOC stocks. In the long-term warmed grassland, all transects were located on level ground. Within the long-term and\nmedium-term warmed grassland, all measurement plots had similar microtopography, soil depth and grazing history. 9 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Each transect consists of six 2 x 2 m permanent measurement plots distributed along the soil temperature gradient, including\nunwarmed soil (MAT: 5.7 ± 0.1 ◦C), yielding 60 plots in total. Each 2 x 2 m permanent measurement plot was accompanied by\n160\ntwo adjacent 0.5 x 0.5 m subplots for destructive measurements. Plot-specific soil warming was recorded hourly at 10 cm soil\ndepth using HOBO TidbiT v2 Water Temperature Data Loggers (Onset Computer Corporation, USA). Because the permanent\nplots occurred at different warming intensities in the different transects, we adopted a regression approach (see statistics below). More detailed information on the experimental design is provided in Sigurdsson et al. (2016). In July 2013 and 2018, two 0-10 cm soil cores (corer ø= 5.12 cm) were taken within each subplot. In the medium-term\n165\nwarmed grassland, soils were too shallow to sample deeper, but additional 10-30 cm cores were taken in the long-term warmed\ngrassland. Cores were analysed for: (1) soil C concentrations; (2) pH (topsoil only); (3) soil bulk density (BD); and (4) SOC\nstocks. From the first core we obtained fine roots (<2 mm) and soil particles (>2 mm) (necessary to calculate BD) by washing the In July 2013 and 2018, two 0-10 cm soil cores (corer ø= 5.12 cm) were taken within each subplot. In the medium-term\n165\nwarmed grassland, soils were too shallow to sample deeper, but additional 10-30 cm cores were taken in the long-term warmed\ngrassland. Cores were analysed for: (1) soil C concentrations; (2) pH (topsoil only); (3) soil bulk density (BD); and (4) SOC\nstocks. Appendix A: Material and methods\n125 Further installation details of the lysimeters are described in Edlinger (2016), as well as the sampling procedure. The C-input data for arbuscular mycorrhizae originates from Zhang et al. (2020), where the sampling\n180\nprocedure is described. Aboveground biomass was sampled by placing a 20x40 cm frame on the plot, after which all vegetation\nwas clipped. The samples were taken to the lab and sorted by hand in a grass and moss fraction. Both fractions were dried for\n48 h at 70 ◦C, weighed and milled. The samples were analysed for C concentration (%) by dry combustion (Macro Elemental\nAnalyser, model vario MAX CN, Hanau, Germany). Aggregate fractionation was done in 2018 only. Per plot, a 0-10 cm soil the sampling procedure. The C-input data for arbuscular mycorrhizae originates from Zhang et al. (2020), where the sampling\n180\nprocedure is described. Aboveground biomass was sampled by placing a 20x40 cm frame on the plot, after which all vegetation\nwas clipped. The samples were taken to the lab and sorted by hand in a grass and moss fraction. Both fractions were dried for\n48 h at 70 ◦C, weighed and milled. The samples were analysed for C concentration (%) by dry combustion (Macro Elemental\nAnalyser, model vario MAX CN, Hanau, Germany). Aggregate fractionation was done in 2018 only. Per plot, a 0-10 cm soil the sampling procedure. The C-input data for arbuscular mycorrhizae originates from Zhang et al. (2020), where the sampling\n180\nprocedure is described. Aboveground biomass was sampled by placing a 20x40 cm frame on the plot, after which all vegetation\nwas clipped. The samples were taken to the lab and sorted by hand in a grass and moss fraction. Both fractions were dried for\n48 h at 70 ◦C, weighed and milled. The samples were analysed for C concentration (%) by dry combustion (Macro Elemental\nAnalyser, model vario MAX CN, Hanau, Germany). Aggregate fractionation was done in 2018 only. Per plot, a 0-10 cm soil core was taken (corer ø= 5.12 cm) and dried at room temperature for a some weeks. Stones were removed and aggregates\n185\nlarger than 8 mm were broken up by dry-sieving on a 8 mm soil sieve. The dry-sieved soil was then slaked for 5 min with DI\nwater, after which it was wet-sieved on a 2 mm, 250 µm and 63 µm, to separate into four size fractions. Appendix A: Material and methods\n125 From the first core we obtained fine roots (<2 mm) and soil particles (>2 mm) (necessary to calculate BD) by washing the\ncores over two sieves with mesh sizes 2 mm and 0.5 mm. Roots and >2 mm particles were dried and weighed to gain fine root\n170\nbiomass (g m−2) and the volume of >2 mm particles (g cm−3) was measured by the water displacement method. The second\nsoil core was first dried and weighed (as for aboveground vegetation), and soil was then sieved to obtain soil particles <2 mm\nand split into three aliquots. One aliquot of 2 g was milled (Retsch MM301 Mixer Mill, Haan, Germany) and analysed for\nC concentration (%) by dry combustion (Macro Elemental Analyser, model vario MAX CN, Hanau, Germany). Finally, BD (g cm−3) and SOC stocks (ton ha−1) were calculated according to the approach described in Bárcena et al. (2014). 175\nTo measure dissolved organic matter (DOC), teflon suction cup lysimeters (Prenart Super Quartz, Prenart Equipment Aps,\nFrederiksberg, Denmark) were placed at about 30-40 cm depth in the medium-term and long-term warmed grassland, in Octo-\nber 2014. Samples were taken during summer 2015, 2016 and 2017. The DOC was analysed with a combined Total Organic\nCarbon (Shimadzu, Kyoto, Japan). Further installation details of the lysimeters are described in Edlinger (2016), as well as (g cm−3) and SOC stocks (ton ha−1) were calculated according to the approach described in Bárcena et al. (2014). 175\nTo measure dissolved organic matter (DOC), teflon suction cup lysimeters (Prenart Super Quartz, Prenart Equipment Aps,\nFrederiksberg, Denmark) were placed at about 30-40 cm depth in the medium-term and long-term warmed grassland, in Octo-\nber 2014. Samples were taken during summer 2015, 2016 and 2017. The DOC was analysed with a combined Total Organic\nCarbon (Shimadzu, Kyoto, Japan). Further installation details of the lysimeters are described in Edlinger (2016), as well as (g cm−3) and SOC stocks (ton ha−1) were calculated according to the approach described in Bárcena et al. (2014). 175\nTo measure dissolved organic matter (DOC), teflon suction cup lysimeters (Prenart Super Quartz, Prenart Equipment Aps,\nFrederiksberg, Denmark) were placed at about 30-40 cm depth in the medium-term and long-term warmed grassland, in Octo-\nber 2014. Samples were taken during summer 2015, 2016 and 2017. The DOC was analysed with a combined Total Organic\nCarbon (Shimadzu, Kyoto, Japan). Appendix A: Material and methods\n125 Each fraction was dried\nat 70 ◦C for 72 h, after which all fractions were ground with a ball mill to homogenise and analysed for C concentration (%)\nby dry combustion (Macro Elemental Analyser, model vario MAX CN, Hanau, Germany). Relative mass of the fractions was calculated by dividing the fraction mass by the sum of all fraction masses of initial sample. The absolute soil C-amount of each\n190\nfraction was calculated by multiplying the fraction soil mass per 100 g of dry soil with the soil C % (fig. 3). A soil mass correction of the SOC stocks as described in Ellert and Bettany (1995) was necessary to compare stock changes\nacross the soil warming gradient as soil compaction increased with warming in the upper soil layers (increasing BD; fig. B7), 10 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. implying that soil depths in unwarmed soil corresponded to shallower soil depths at warmer soils. The calculation method is\nexplained in detail in fig. B8. 5 implying that soil depths in unwarmed soil corresponded to shallower soil depths at warmer soils. The calculation method is\nexplained in detail in fig. B8. 195\nThe soil warming dependence of bulk soil SOC stocks (corrected and uncorrected for soil compaction), BD, DOC and soil C\n% were tested with a linear mixed effects model (Pinheiro et al., 2021). Soil warming and warming-duration (medium-term vs. long-term) were included as main effects, while sampling year was used as random effect to account for sampling differences\nand interannual variabilities between the two sampling campaigns. In all cases, criteria for normality and homoscedasticity\nwere met. For all tests, the dataset was reduced to cover only the warming levels captured by the projections for high northern\n200\nlatitudes for the year 2100 (0 – 6.4 ◦C warming) (IPCC, 2013). All tests were performed using R software (R Development\nCore Team, 2011). implying that soil depths in unwarmed soil corresponded to shallower soil depths at warmer soils. The calculation method is\nexplained in detail in fig. B8. 195\nThe soil warming dependence of bulk soil SOC stocks (corrected and uncorrected for soil compaction), BD, DOC and soil C\n% were tested with a linear mixed effects model (Pinheiro et al., 2021). Soil warming and warming-duration (medium-term vs. Appendix A: Material and methods\n125 (n = 78 & 40 for topsoil and subsoil respectively) y = −1.7x + 32.8\nR² = 0.11; P= 0.0037\nP= 0.47\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n20\n30\n40\n50\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock (ton ha−1)\nYr−grassland\n2013 − LTW\n2013 − MTW\n2018 − LTW\n2018 − MTW P= 0.47\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n20\n30\n40\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock (ton ha−1)\nYr−grassland\n2013 − LTW\n2013 − MTW\n2018 − LTW\n2018 − MTW P= 0.47\nSubsoil\n0\n1\n2\n3\n4\n5\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock\n2013 − MT\n2018 − LTW\n2018 − MT Figure B1. Reduction of soil organic carbon (SOC) stock with soil warming, a) in the topsoil (0-10 cm); b) in the subsoil (10-30 cm). All soil\nsamples were taken in July 2013 or July 2018. The regression for medium-term warmed (MTW) and long-term warmed (LTW) grassland\n(in topsoil) for both 2013 and 2018 were combined, since no soil temperature x warming-duration interaction effect, nor a main effect for\nwarming-duration was found. Soil warming is expressed relative to ambient soil temperature (both at 10 cm depth). In topsoil, a linear relation\nwas observed, while no significant effect was present in subsoil. The 95 % confidence bounds are shown around the topsoil regression slope. (n = 78 & 40 for topsoil and subsoil respectively) Figure B1. Reduction of soil organic carbon (SOC) stock with soil warming, a) in the topsoil (0-10 cm); b) in the subsoil (10-30 cm). All soil\nsamples were taken in July 2013 or July 2018. The regression for medium-term warmed (MTW) and long-term warmed (LTW) grassland\n(in topsoil) for both 2013 and 2018 were combined, since no soil temperature x warming-duration interaction effect, nor a main effect for\nwarming-duration was found. Soil warming is expressed relative to ambient soil temperature (both at 10 cm depth). In topsoil, a linear relation\nwas observed, while no significant effect was present in subsoil. The 95 % confidence bounds are shown around the topsoil regression slope. (n = 78 & 40 for topsoil and subsoil respectively) Figure B1. Reduction of soil organic carbon (SOC) stock with soil warming, a) in the topsoil (0-10 cm); b) in the subsoil (10-30 cm). Appendix A: Material and methods\n125 long-term) were included as main effects, while sampling year was used as random effect to account for sampling differences\nand interannual variabilities between the two sampling campaigns. In all cases, criteria for normality and homoscedasticity\nwere met. For all tests, the dataset was reduced to cover only the warming levels captured by the projections for high northern\n200\nlatitudes for the year 2100 (0 – 6.4 ◦C warming) (IPCC, 2013). All tests were performed using R software (R Development\nCore Team, 2011). were met. For all tests, the dataset was reduced to cover only the warming levels captured by the projections for high northern\n200\nlatitudes for the year 2100 (0 – 6.4 ◦C warming) (IPCC, 2013). All tests were performed using R software (R Development\nCore Team, 2011). 11 11 Appendix B: Supplementary Appendix B: Supplementary y = −1.7x + 32.8\nR² = 0.11; P= 0.0037\nP= 0.47\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n20\n30\n40\n50\n20\n30\n40\n50\nSoil warming (°C)\nSOC stock (ton ha−1)\nYr−grassland\n2013 − LTW\n2013 − MTW\n2018 − LTW\n2018 − MTW\nFigure B1. Reduction of soil organic carbon (SOC) stock with soil warming, a) in the topsoil (0-10 cm); b) in the subsoil (10-30 cm). All soil\nsamples were taken in July 2013 or July 2018. The regression for medium-term warmed (MTW) and long-term warmed (LTW) grassland\n(in topsoil) for both 2013 and 2018 were combined, since no soil temperature x warming-duration interaction effect, nor a main effect for\nwarming-duration was found. Soil warming is expressed relative to ambient soil temperature (both at 10 cm depth). In topsoil, a linear relation\nwas observed, while no significant effect was present in subsoil. The 95 % confidence bounds are shown around the topsoil regression slope. Appendix A: Material and methods\n125 (topsoil n = 42 & 40 for MTW and LTW grassland\nrespectively; subsoil n = 40 for LTW grassland) 13 P = 0.2\nP = 0.7\nP = 0.09\nP = 0.6\nP = 0.4\nP = 0.9\nP = 0.9\nP = 0.2\nMTW\nLTW\nAGB\nFine roots\nAMF\nTotal\n1\n2\n3\n4\n5\n0\n1\n2\n3\n4\n5\n0\n4\n8\n12\n4\n8\n12\n16\n0.5\n1.0\n1.5\n2.0\n10\n15\n20\n25\nSoil warming (°C)\nC−input (ton ha−1) P = 0.2\nP = 0.7\nP = 0.09\nP = 0.6\nP = 0.4\nP = 0.9\nP = 0.9\nP = 0.2\nMTW\nLTW\nAGB\nFine roots\nAMF\nTotal\n1\n2\n3\n4\n5\n0\n1\n2\n3\n4\n5\n0\n4\n8\n12\n4\n8\n12\n16\n0.5\n1.0\n1.5\n2.0\n10\n15\n20\n25\nSoil warming (°C)\nC−input (ton ha−1)\nxies for annual soil C-inputs from aboveground biomass (AGB), fine root biomass and arbuscular myco\narmed (MTW) and the long-term warmed (LTW) grasslands. Vascular plant aboveground biomass wa\ninputs; vascular plant fine root biomass for belowground C-inputs and C sequestered by AMF (Cnew;\nnputs by arbuscular mycorrhizae. For the observed soil warming range (0-6.4 ◦C warming), no change\nwere obtained by a linear regression analysis. (n = 20 & 17 for MTW and LTW inputs respectively) P = 0.7\nP = 0.09\nP = 0.6\nP = 0.9\nP = 0.9\nP = 0.2\nGB\nFine roots\nAMF\nTotal\n1\n2\n3\n4\n5\n0\n1\n2\n3\n4\n5\n0\n4\n4\n8\n12\n16\n0.5\n1.0\n1.5\n2.0\n10\n15\n20\n25\nSoil warming (°C)\nC−input (ton ha−1)\nFigure B3. Proxies for annual soil C-inputs from aboveground biomass (AGB), fine root biomass and arbuscular mycorrhizae (AMF) in the\nmedium-term warmed (MTW) and the long-term warmed (LTW) grasslands. Vascular plant aboveground biomass was used as a proxy for\naboveground C-inputs; vascular plant fine root biomass for belowground C-inputs and C sequestered by AMF (Cnew; data from Zhang et al. (2020)) for C-inputs by arbuscular mycorrhizae. For the observed soil warming range (0-6.4 ◦C warming), no change in C-inputs could be\nfound. P-values were obtained by a linear regression analysis. (n = 20 & 17 for MTW and LTW inputs respectively) Soil warming (°C) Figure B3. Appendix A: Material and methods\n125 All soil\nsamples were taken in July 2013 or July 2018. The regression for medium-term warmed (MTW) and long-term warmed (LTW) grassland\n(in topsoil) for both 2013 and 2018 were combined, since no soil temperature x warming-duration interaction effect, nor a main effect for\nwarming-duration was found. Soil warming is expressed relative to ambient soil temperature (both at 10 cm depth). In topsoil, a linear relation\nwas observed, while no significant effect was present in subsoil. The 95 % confidence bounds are shown around the topsoil regression slope. (n = 78 & 40 for topsoil and subsoil respectively) 12 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. y = −0.42x + 5.74\nR² = 0.16; P= 0.0081\ny = −0.49x + 6.72\nR² = 0.6; P= 0.00022\nP= 0.16\nMTW\nLTW\nTopsoil\nSubsoil\n0\n2\n4\n0\n2\n4\n0\n3\n6\n9\n0\n3\n6\n9\nSoil warming (°C)\nSoil C (%)\nYear\n2013\n2018 y = −0.42x + 5.74\nR² = 0.16; P= 0.0081\ny = −0.49x + 6.72\nR² = 0.6; P= 0.00022\nP= 0.16\nMTW\nLTW\nTopsoil\nSubsoil\n0\n2\n4\n0\n2\n4\n0\n3\n6\n9\n0\n3\n6\n9\nSoil warming (°C)\nSoil C (%)\nYear\n2013\n2018\nFigure B2. Percentage of carbon in topsoil and subsoil, for the long-term warmed (LTW) and medium-term warmed (MTW) grassland. The 95 % confidence bounds are shown around the topsoil linear regression slopes. (topsoil n = 42 & 40 for MTW and LTW grassland\nrespectively; subsoil n = 40 for LTW grassland) LTW Figure B2. Percentage of carbon in topsoil and subsoil, for the long-term warmed (LTW) and medium-term warmed (MTW) grassland. The 95 % confidence bounds are shown around the topsoil linear regression slopes. (topsoil n = 42 & 40 for MTW and LTW grassland\nrespectively; subsoil n = 40 for LTW grassland) Figure B2. Percentage of carbon in topsoil and subsoil, for the long-term warmed (LTW) and medium-term warmed (MTW) grassland. The 95 % confidence bounds are shown around the topsoil linear regression slopes. Appendix A: Material and methods\n125 Proxies for annual soil C-inputs from aboveground biomass (AGB), fine root biomass and arbuscular mycorrhizae (AMF) in the\nmedium-term warmed (MTW) and the long-term warmed (LTW) grasslands. Vascular plant aboveground biomass was used as a proxy for\naboveground C-inputs; vascular plant fine root biomass for belowground C-inputs and C sequestered by AMF (Cnew; data from Zhang et al. (2020)) for C-inputs by arbuscular mycorrhizae. For the observed soil warming range (0-6.4 ◦C warming), no change in C-inputs could be\nfound. P-values were obtained by a linear regression analysis. (n = 20 & 17 for MTW and LTW inputs respectively) 14 −5\n−10\n−20\n−30\n−2\n−1\n0\n1\n2\nTemperature difference from 10 cm (°C)\nSoil depth (cm) −5\n−10\n−20\n−30\n−2\n−1\n0\n1\n2\nSoil depth (cm) Temperature difference from 10 cm (°C) Figure B4. Soil warming along the vertical soil profile, based on the reference temperature measured at 10 cm which is used throughout the\npaper. The median temperature is about 1 ◦C higher at 5 cm depth, while being slightly lower at 20 cm and 30 cm depth. Due to the shallow\nsoil in the medium-term warmed grassland, the warming profile is given for the long-term warmed grassland only. 15 topsoil\nsubsoil\nP = 0.8\nP = 0.6\n0\n10\n20\n30\n40\n0\n1\n2\n3\n4\n5\nSoil warming (°C)\nFine root density (mg roots cm−3)\nSoil layer\nTopsoil\nSubsoil\nFigure B5. Fine root density in long-term warmed (LTW) grassland in top-and subsoil sampled in July 2018. For the observed soil warming\nrange (0-6.4 ◦C warming), no change in C-inputs could be found. P-values were obtained by a linear regression analysis. In the top 30 cm\nsoil layer, 95.7 ± 0.4 (SE) % of the fine root biomass was found in upper 10 cm, which is why we define the 0-10 cm layer as topsoil, and\nthe 10-30 cm layer as subsoil. (n = 17 & 15 for topsoil and subsoil respectively)\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. topsoil\nsubsoil\nP = 0.8\nP = 0.6\n0\n10\n20\n30\n40\n0\n1\n2\n3\n4\n5\nSoil\narming (°C)\nFine root density (mg roots cm−3)\nSoil layer\nTopsoil\nSubsoil Figure B5. Fine root density in long-term warmed (LTW) grassland in top-and subsoil sampled in July 2018. Appendix A: Material and methods\n125 For the observed soil warming\nrange (0-6.4 ◦C warming), no change in C-inputs could be found. P-values were obtained by a linear regression analysis. In the top 30 cm\nsoil layer, 95.7 ± 0.4 (SE) % of the fine root biomass was found in upper 10 cm, which is why we define the 0-10 cm layer as topsoil, and\nthe 10-30 cm layer as subsoil. (n = 17 & 15 for topsoil and subsoil respectively) Figure B5. Fine root density in long-term warmed (LTW) grassland in top-and subsoil sampled in July 2018. For the observed soil warming\nrange (0-6.4 ◦C warming), no change in C-inputs could be found. P-values were obtained by a linear regression analysis. In the top 30 cm\nsoil layer, 95.7 ± 0.4 (SE) % of the fine root biomass was found in upper 10 cm, which is why we define the 0-10 cm layer as topsoil, and\nthe 10-30 cm layer as subsoil. (n = 17 & 15 for topsoil and subsoil respectively) Figure B5. Fine root density in long-term warmed (LTW) grassland in top-and subsoil sampled in July 2018. For the observed soil warming\nrange (0-6.4 ◦C warming), no change in C-inputs could be found. P-values were obtained by a linear regression analysis. In the top 30 cm\nsoil layer, 95.7 ± 0.4 (SE) % of the fine root biomass was found in upper 10 cm, which is why we define the 0-10 cm layer as topsoil, and\nthe 10-30 cm layer as subsoil. (n = 17 & 15 for topsoil and subsoil respectively) 16 P = 0.87\nP = 0.8\nMWT\nLTW\n0\n1\n2\n3\n4\n5\n1\n2\n0.0\n0.5\n1.0\n1.5\nSoil warming °C\nDOC (ppm)\nYear\n2015\n2016\n2017\nFigure B6. Dissolved organic carbon (DOC) in medium-term warmed (MTW) and long-term warmed (LTW) grassland during summer 2015,\n2016 and 2017. No DOC change was observed with soil warming in the SWT (P = 0.95), nor in the LTW (P = 0.8), meaning that carbon-inputs\ninto deeper soil layers remained constant over the whole soil temperature gradient. Statistical analysis was done with a linear mixed effects\nmodel with soil warming as explanatory variable and sampling year as a random factor. Criteria for normality and homoscedasticity were\nmet. Appendix A: Material and methods\n125 Dissolved organic carbon was sampled at a approximate depth of 30 cm with Prenart Super Quartz (Prenart, Fredriksberg, Denmark)\nsoil water samplers, installed around 1 October 2014. The samples was always inserted from ‘downslope,’ where the soil was deep enough. Analyses of the samples was done at the IGN Biochemistry Lab, University of Copenhagen. (n = 25 & 29 for MTW and LTW grassland\nrespectively)\nhttps://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. P = 0.87\nP = 0.8\nMWT\nLTW\n0\n1\n2\n3\n4\n5\n1\n2\n0.0\n0.5\n1.0\n1.5\nSoil warming °C\nDOC (ppm)\nYear\n2015\n2016\n2017\nFigure B6. Dissolved organic carbon (DOC) in medium-term warmed (MTW) and long-term warmed (LTW) grassland during summer 2015,\nhttps://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. P = 0.87\nP = 0.8\nMWT\nLTW\n0\n1\n2\n3\n4\n5\n1\n2\n0.0\n0.5\n1.0\n1.5\nSoil warming °C\nDOC (ppm)\nYear\n2015\n2016\n2017\n⃝\n( ) Figure B6. Dissolved organic carbon (DOC) in medium-term warmed (MTW) and long-term warmed (LTW) grassland during summer 2015,\n2016 and 2017. No DOC change was observed with soil warming in the SWT (P = 0.95), nor in the LTW (P = 0.8), meaning that carbon-inputs\ninto deeper soil layers remained constant over the whole soil temperature gradient. Statistical analysis was done with a linear mixed effects\nmodel with soil warming as explanatory variable and sampling year as a random factor. Criteria for normality and homoscedasticity were\nmet. Dissolved organic carbon was sampled at a approximate depth of 30 cm with Prenart Super Quartz (Prenart, Fredriksberg, Denmark)\nsoil water samplers, installed around 1 October 2014. The samples was always inserted from ‘downslope,’ where the soil was deep enough. Analyses of the samples was done at the IGN Biochemistry Lab, University of Copenhagen. (n = 25 & 29 for MTW and LTW grassland\nrespectively) 17 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Appendix A: Material and methods\n125 y = 0.027x + 0.6\nR² = 0.12; P = 1.5e−03\na)\ny = 0.031x + 0.85\nR² = 0.1; P = 0.0096\nb)\nTopsoil\nSubsoil\n0\n1\n2\n3\n4\n5\n0\n1\n2\n3\n4\n5\n0.4\n0.6\n0.8\n1.0\n1.2\n1.4\nSoil warming (°C)\nBulk density (g cm−3)\nGrassland; Year\nLTW; 2013\nLTW; 2018\nMTW; 2013\nMTW; 2018 Soil warming (°C) Figure B7. Changes in bulk density with soil warming in the long-term warmed (LTW; circles) and the medium-term warmed (MTW;\ntriangles) grassland. Soil warming is expressed relative to ambient soil temperature (at 10 cm depth). Bulk density is separated for the topsoil\n(0-10 cm) and the subsoil (10-30 cm). The regression for medium-term warmed (MTW) and long-term warmed (LTW) grassland (in topsoil)\nfor both 2013 and 2018 were combined, since no soil temperature x warming-duration interaction effect, nor a main effect for warming-\nduration or sampling year was found. The 95 % confidence bounds are shown around the regression slopes. (n = 78 & 40 for topsoil and\nsubsoil respectively) 18 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Figure B8. Soil mass correction. Due to significant soil compaction (increasing bulk density (BD)) with increasing soil temperature in\nthe upper soil layers (fig. B7), a certain soil depth in unwarmed soil corresponds to ever shallower soil depths at warmer soil temperatures. Therefore, the SOC stocks were corrected for soil compaction, i.e., the corrected SOC stocks were calculated on the same mass of soil. Figure B8. Soil mass correction. Due to significant soil compaction (increasing bulk density (BD)) with increasing soil temperature in\nthe upper soil layers (fig. B7), a certain soil depth in unwarmed soil corresponds to ever shallower soil depths at warmer soil temperatures. Therefore, the SOC stocks were corrected for soil compaction, i.e., the corrected SOC stocks were calculated on the same mass of soil. For topsoil, we calculated a corrected thickness of a warmed soil layer, corresponding to the same core mass as the the For topsoil, we calculated a corrected thickness of a warmed soil layer, correspond For topsoil, we calculated a corrected thickness of a warmed soil layer, corresponding to the same core mass as the the\nunwarmed soils. Using the ratio of corrected and uncorrected layer thickness, we calculated a corrected SOC stock for the\n205\nwarmed topsoil. Appendix A: Material and methods\n125 For warmed subsoils, we calculated the corrected thickness in the same way as for topsoil, but subtracted a\nsurplus thickness of the above topsoil. The corrected subsoil SOC stock was then calculated as the sum of the surplus topsoil\nSOC stock and the SOC stock in the corrected subsoil layer. The detailed calculation method is shown below. unwarmed soils. Using the ratio of corrected and uncorrected layer thickness, we calculated a corrected SOC stock for the\n205\nwarmed topsoil. For warmed subsoils, we calculated the corrected thickness in the same way as for topsoil, but subtracted a\nsurplus thickness of the above topsoil. The corrected subsoil SOC stock was then calculated as the sum of the surplus topsoil\nSOC stock and the SOC stock in the corrected subsoil layer. The detailed calculation method is shown below. Corrections 0-10cm soil layer First, the corrected soil layer thickness of the 0-10 cm layer (C.Th0−10) was calculated for the\n10 C.Th0−10 = U.Th0−10 × U.BD0−10\nC.BD0−10\n(B1) C.Th0−10 = U.Th0−10 × U.BD0−10\nC.BD0−10\n(B1) C.Th0−10 = U.Th0−10 × U.BD0−10\nC.BD0−10 (B1) Where U.Th0−10 is the uncorrected soil layer thickness of the 0-10 cm layer (10 cm), U.BD0−10 is the uncorrected BD\nof the 0-10 cm layer (which corresponds to the BD at ambient soil temperature) and C.BD0−10 is the measured BD for the\n0-10 cm layer. Then, the corrected SOC stocks of the 0-10 depth layer (C.SOC0−10) were calculated: C.SOC0−10 = U.SOC0−10 × C.Th0−10\nU.Th0−10\n215 (B2) 19 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Where U.SOC0−10 is the uncorrected SOC stock in the 0-10 cm depth layer, and C.Th0−10/U.Th0−10 corresponds to the\nproportional thickness of the corrected layer compared to the uncorrected layer. Author contributions. BDS, NIWL, SV, JLS, LF, JTW, HW, PMVB, NV and IAJ designed the study. PG, HW, CF, NIWL, BDS, IAJ, SV,\nKVDV, EV, ZFL, SM-J, NV and MM provided the data. All authors contributed substantially to the analysis and the writing of the manuscript. Corrections 10-30 cm soil layer (only applicable to the long-term warmed grassland) First, the thickness of the surplus soil layer from the 0-10 cm layer (S.Th0−10) was calculated: First, the thickness of the surplus soil layer from the 0-10 cm layer (S.Th0−10) was calculated: S.Th0−10 = (U.Th0−10 −C.Th0−10) × U.BD0−10\nC.BD0−10\n220 (B3) S.Th0−10 = (U.Th0−10 −C.Th0−10) × U.BD0−10\nC.BD0−10\n(B3)\n220\nThe second term is a correction factor for the soil compaction of the surplus soil layer. Then, the corrected thickness of the\n10-30 cm soil layer, not yet taking the surplus soil sampled from the 0-10 cm layer (S.Th0−10) into account, (c.Th10−30) was\ncalculated: C.BD0−10 The second term is a correction factor for the soil compaction of the surplus soil layer. Then, the corrected thickness of the\n10-30 cm soil layer, not yet taking the surplus soil sampled from the 0-10 cm layer (S.Th0−10) into account, (c.Th10−30) was\ncalculated: c.Th10−30 = U.Th10−30 × U.BD10−30\nC.BD10−30\n(B4) c.Th10−30 = U.Th10−30 × U.BD10−30\nC.BD10−30 (B4) Where U.Th10−30 is the uncorrected soil layer thickness of the 10-30 cm layer (20 cm), U.BD10−30 is the uncorrected BD\n225\nof the 10-30 cm layer (which corresponds to the BD at ambient soil temperature) and C.BD10−30 is the measured BD for the\n10-30 cm layer. Where U.Th10−30 is the uncorrected soil layer thickness of the 10-30 cm layer (20 cm), U.BD10−30 is the uncorrected BD\n225\nof the 10-30 cm layer (which corresponds to the BD at ambient soil temperature) and C.BD10−30 is the measured BD for the\n10-30 cm layer. Where U.Th10−30 is the uncorrected soil layer thickness of the 10-30 cm layer (20 cm), U.BD10−30 is the uncorrected BD\n225\nof the 10-30 cm layer (which corresponds to the BD at ambient soil temperature) and C.BD10−30 is the measured BD for the\n10-30 cm layer. Subsequently, we took into account the thickness of the surplus soil sampled from the 0-10 cm layer to calculate the final\ncorrected soil thickness of the 10-30 cm soil layer (C.Th10−30). Hence, C.Th10−30 is the part of the 10-30 cm layer that Subsequently, we took into account the thickness of the surplus soil sampled from the 0-10 cm layer to calculate the final\ncorrected soil thickness of the 10-30 cm soil layer (C.Th10−30). Corrections 10-30 cm soil layer (only applicable to the long-term warmed grassland) Hence, C.Th10−30 is the part of the 10-30 cm layer that Subsequently, we took into account the thickness of the surplus soil sampled from the 0-10 cm layer to calculate the final\ncorrected soil thickness of the 10-30 cm soil layer (C.Th10−30). Hence, C.Th10−30 is the part of the 10-30 cm layer that\nremains after (i) correcting for soil compaction and (ii) subtracting the thickness of the surplus soil sampled at the 0-10 cm\n230\nlayer: corrected soil thickness of the 10 30 cm soil layer (C.Th10−30). Hence, C.Th10−30 is the part of the 10 30 cm layer that\nremains after (i) correcting for soil compaction and (ii) subtracting the thickness of the surplus soil sampled at the 0-10 cm\n230\nlayer: remains after (i) correcting for soil compaction and (ii) subtracting the thickness of the surplus soil sampled at the 0-10 cm\n230\nlayer: C.Th10−30 = c.Th10−30 −S.Th0−10 Th10−30 = c.Th10−30 −S.Th0−10 h10−30 −S.Th0−10 (B5) h0−10\n(B5) ected SOC stock for the 10-30 cm layer (C.SOC10−30) was calculated: Subsequently, the corrected SOC stock for the 10-30 cm layer (C.SOC10−30) was calculated: OC stock for the 10-30 cm layer (C.SOC10−30) was calculated: Subsequently, the corrected SOC stock for the 10-30 cm layer (C.SOC10−30) was calculated: Subsequently, the corrected SOC stock for the 10-30 cm layer (C.SOC10−30) was calculated: Subsequently, the corrected SOC stock for the 10-30 cm layer (C.SOC10−30) was calculated: C.SOC10−30 = (U.SOC0−10 −C.SOC0−10) + U.SOC10−30 × C.Th10−30\nU.Th10−30\n(B6) C.SOC10−30 = (U.SOC0−10 −C.SOC0−10) + U.SOC10−30 × C.Th10−30\nU.Th10−30 (B6) Where U.SOC10−30 is the uncorrected SOC stock in the 10-30 cm depth layer, and C.Th10−30/U.Th10−30 corresponds to\n235\nthe proportional thickness of the corrected layer compared to the uncorrected layer. Where U.SOC10−30 is the uncorrected SOC stock in the 10-30 cm depth layer, and C.Th10−30/U.Th10−30 corresponds to\n235\nthe proportional thickness of the corrected layer compared to the uncorrected layer. Where U.SOC10−30 is the uncorrected SOC stock in the 10-30 cm depth layer, and C.Th10−30/U.Th10−30 corresponds to\n35\nthe proportional thickness of the corrected layer compared to the uncorrected layer. Data availability. All data used in this manuscript has been made available on Zenodo. DOI: 10.5281/zenodo.4745479 Data availability. All data used in this manuscript has been made available on Zenodo. DOI: 10.5281/zenodo.4745479 Data availability. All data used in this manuscript has been made available on Zenodo. DOI: 10.5281/zenodo.4745479 Author contributions. Corrections 10-30 cm soil layer (only applicable to the long-term warmed grassland) BDS, NIWL, SV, JLS, LF, JTW, HW, PMVB, NV and IAJ designed the study. PG, HW, CF, NIWL, BDS, IAJ, SV,\nKVDV, EV, ZFL, SM-J, NV and MM provided the data. All authors contributed substantially to the analysis and the writing of the manuscript. Author contributions. BDS, NIWL, SV, JLS, LF, JTW, HW, PMVB, NV and IAJ designed the study. PG, HW, CF, NIWL, BDS, IAJ, SV,\nKVDV, EV, ZFL, SM-J, NV and MM provided the data. All authors contributed substantially to the analysis and the writing of the manuscript. 20 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Competing interests. The authors declare that they have no conflict of interest. 240 Competing interests. The authors declare that they have no conflict of interest. 240 Competing interests. The authors declare that they have no conflict of interest. 240 Acknowledgements. This research was supported by a joint Fonds Wetenschappelijk Onderzoek Flanders (FWO) and Fonds zur Förderung\nder wissenschaftlichen Forschung (FWF) grant with nos. FWO-G0F2217N & FWF-I-3237, awarded to I.A.J and M.B., the European Re-\nsearch Council Synergy grant 610028 (IMBALANCE-P), and the Research Council of the University of Antwerp (FORHOT TOP-BOF\nproject). This work contributes to the FSC-Sink, CAR-ES and the ClimMani COST Action (ES1308). Reykir - the Icelandic state gardening\nschool, Keldnaholt – the Agricultural University of Iceland and Mogilsá – the Icelandic Forest Research, provided logistical support for\n245\nthe present study. Further, we thank the Lorentz Center in Leiden. We thank Iris Janssens, Jochen Janssens, Inge Van De Putte, Maxime\nSepelie, Jana Vynckier, Alexander Meire, Lieven Michielsen, Freja Dreesen, Sebastien Leys, Elín Gudmundsdóttir, Annemie Vinck, Paul\nLeblans, Kwinten Leblans, Sigvatur, Már Gudmundsson, Elías Óskarsson and Simon Arnar Pálsson for their help in the field. We thank Brita\nBerglund, Baldur Vigfusson, Nadine Calluy, Tom Van Der Spiet, Anne Cools, Marijke Van den Bruel, Els Oosterbos, Saad El-Rawi, Miguel\nPortillo Estrada and Wannes Kiebooms for their assistance with the lab analyses. 250 school, Keldnaholt – the Agricultural University of Iceland and Mogilsá – the Icelandic Forest Research, provided logistical support for\n245\nthe present study. Further, we thank the Lorentz Center in Leiden. Corrections 10-30 cm soil layer (only applicable to the long-term warmed grassland) We thank Iris Janssens, Jochen Janssens, Inge Van De Putte, Maxime\nSepelie, Jana Vynckier, Alexander Meire, Lieven Michielsen, Freja Dreesen, Sebastien Leys, Elín Gudmundsdóttir, Annemie Vinck, Paul\nLeblans, Kwinten Leblans, Sigvatur, Már Gudmundsson, Elías Óskarsson and Simon Arnar Pálsson for their help in the field. We thank Brita\nBerglund, Baldur Vigfusson, Nadine Calluy, Tom Van Der Spiet, Anne Cools, Marijke Van den Bruel, Els Oosterbos, Saad El-Rawi, Miguel\nPortillo Estrada and Wannes Kiebooms for their assistance with the lab analyses. 250 21 21 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. References Davidson, E. A. and Janssens, I. A.: Temperature Sensitivity of Soil Carbon Decomposition and Feedbacks to Climate Change, Nature, 440,\n165–173, https://doi.org/10.1038/nature04514, 2006. Davidson, E. A. and Janssens, I. A.: Temperature Sensitivity of Soil Carbon Decomposition and Feedbacks to Climate Change, Nature, 440,\n165–173, https://doi.org/10.1038/nature04514, 2006. De Boeck, H. J., Vicca, S., Roy, J., Nijs, I., Milcu, A., Kreyling, J., Jentsch, A., Chabbi, A., Campioli, M., Callaghan,\nT., Beierkuhnlein, C., and Beier, C.: Global Change Experiments: Challenges and Opportunities, BioScience, 65, 922–931,\n275\nhttps://doi.org/10.1093/biosci/biv099, 2015. ,\n,\n,\n,\ny,\n,\nj ,\n,\n,\n,\ny\ng,\n,\n,\n,\n,\n,\np\n,\n,\ng\n,\nT., Beierkuhnlein, C., and Beier, C.: Global Change Experiments: Challenges and Opportunities, BioScience, 65, 922–931,\n275\nhttps://doi.org/10.1093/biosci/biv099, 2015. Edlinger, A.: Changes of belowground processes of the carbon and nitrogen cycle in response to soil warming. Will global warming increase\nthe turnover of soil C and N above plant demands and lead to increased leaching losses Master’s thesis M Sc thesis Copenhagen T., Beierkuhnlein, C., and Beier, C.: Global Change Experiments: Challenges and Opportunities, BioScience, 65, 922–931,\n275\nhttps://doi.org/10.1093/biosci/biv099, 2015. Edlinger, A.: Changes of belowground processes of the carbon and nitrogen cycle in response to soil warming. Will global warming increase\nthe turnover of soil C and N above plant demands and lead to increased leaching losses, Master’s thesis, M. Sc. thesis. Copenhagen\nUniversity, Denmark & University of Natural Resources and Applied Sciences (BOKU), http://forhot.is/wp-content/uploads/2018/01/ https://doi.org/10.1093/biosci/biv099, 2015. Edlinger, A.: Changes of belowground processes of the carbon and nitrogen cycle in response to soil warming. Will global warming increase\nthe turnover of soil C and N above plant demands and lead to increased leaching losses, Master’s thesis, M. Sc. thesis. Copenhagen\nUniversity, Denmark & University of Natural Resources and Applied Sciences (BOKU), http://forhot.is/wp-content/uploads/2018/01/ Edlinger, A.: Changes of belowground processes of the carbon and nitrogen cycle in response to soil warming. Will global warming increase\nthe turnover of soil C and N above plant demands and lead to increased leaching losses, Master’s thesis, M. Sc. thesis. Copenhagen\nUniversity, Denmark & University of Natural Resources and Applied Sciences (BOKU), http://forhot.is/wp-content/uploads/2018/01/\nEdlinger-Anna-Theresa.-2016.-Changes-of-belowground-processes-of-the-carbon-and-nitrogen.xps, 2016. 280 Edlinger-Anna-Theresa.-2016.-Changes-of-belowground-processes-of-the-carbon-and-nitrogen.xps, 2016. 280\nEllert, B. H. and Bettany, J. R.: Calculation of Organic Matter and Nutrients Stored in Soils under Contrasting Management Regimes,\nCanadian Journal of Soil Science, 75, 529–538, 1995. Eyring, V., Bony, S., Meehl, G. A., Senior, C. References Abramoff, R. Z., Torn, M. S., Georgiou, K., Tang, J., and Riley, W. J.: Soil Organic Matter Temperature Sensitivity Cannot Be Directly\nInferred from Spatial Gradients, Global Biogeochemical Cycles, 33, 761–776, 2019. Abramoff, R. Z., Torn, M. S., Georgiou, K., Tang, J., and Riley, W. J.: Soil Organic Matter Temperature Sensitivity Cannot Be Directly\nInferred from Spatial Gradients, Global Biogeochemical Cycles, 33, 761–776, 2019. Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-Carbon Response to Warming Dependent on Microbial Physiology, Nature\nGeoscience, 3, 336–340, https://doi.org/10.1038/ngeo846, 2010. 255\nArnalds, O.: The Soils of Iceland, World Soils Book Series, Springer Netherlands, Dordrecht, https://doi.org/10.1007/978-94-017-9621-7,\n2015. Baillie, I.: Soil survey staff 1999, soil taxonomy: a basic system of soil classification for making and interpreting soil surveys, agricultural\nhandbook 436, Natural Resources Conservation Service, USDA, Washington DC, USA, pp. 869, 2001. Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-Carbon Response to Warming Dependent on Microbial Physiology, Nature\nGeoscience, 3, 336–340, https://doi.org/10.1038/ngeo846, 2010. 255\nArnalds, O.: The Soils of Iceland, World Soils Book Series, Springer Netherlands, Dordrecht, https://doi.org/10.1007/978-94-017-9621-7,\n2015 Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-Carbon Response to Warming Dependent on Microbial Physiology, Nature\nGeoscience, 3, 336–340, https://doi.org/10.1038/ngeo846, 2010. 5 Arnalds, O.: The Soils of Iceland, World Soils Book Series, Springer Netherlands, Dordrecht, https://doi.org/10.1007/978-94-017-9621-7,\n2015. Baillie, I.: Soil survey staff 1999, soil taxonomy: a basic system of soil classification for making and interpreting soil surveys, agricultural\nhandbook 436, Natural Resources Conservation Service, USDA, Washington DC, USA, pp. 869, 2001. Arnalds, O.: The Soils of Iceland, World Soils Book Series, Springer Netherlands, Dordrecht, https://doi.org/10.1007/978-94-017-9621-7,\n2015. Baillie, I.: Soil survey staff 1999, soil taxonomy: a basic system of soil classification for making and interpreting soil surveys, agricultural\nhandbook 436, Natural Resources Conservation Service, USDA, Washington DC, USA, pp. 869, 2001. Bárcena, T. G., Gundersen, P., and Vesterdal, L.: Afforestation Effects on SOC in Former Cropland: Oak and Spruce Chronosequences\n260\nResampled after 13 Years, Global Change Biology, 20, 2938–2952, 2014. Bárcena, T. G., Gundersen, P., and Vesterdal, L.: Afforestation Effects on SOC in Former Cropland: Oak and Spruce Chronosequences\n260\nResampled after 13 Years, Global Change Biology, 20, 2938–2952, 2014. Batjes, N.: Harmonized Soil Property Values for Broad-Scale Modelling (WISE30sec) with Estimates of Global Soil Carbon Stocks, Geo-\nderma, 269, 61–68, https://doi.org/10.1016/j.geoderma.2016.01.034, 2016. References Batjes, N.: Harmonized Soil Property Values for Broad-Scale Modelling (WISE30sec) with Estimates of Global Soil Carbon Stocks, Geo-\nderma, 269, 61–68, https://doi.org/10.1016/j.geoderma.2016.01.034, 2016. Bradford, M. A., McCulley, R. L., Crowther, T. W., Oldfield, E. E., Wood, S. A., and Fierer, N.: Cross-Bi Bradford, M. A., McCulley, R. L., Crowther, T. W., Oldfield, E. E., Wood, S. A., and Fierer, N.: Cross-Biome Patterns in Soil Microbial\nRespiration Predictable from Evolutionary Theory on Thermal Adaptation, Nature ecology & evolution, 3, 223, 2019. 265 Respiration Predictable from Evolutionary Theory on Thermal Adaptation, Nature ecology & evolution, 3, 223, 2019. 265\nCrowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G.,\nAllison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B.,\nEmmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee,\nJ. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavalle M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Po J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., and Bradford, M. A.:\n270\nQuantifying Global Soil Carbon Losses in Response to Warming, Nature, 540, 104–108, https://doi.org/10.1038/nature20150, 2016. C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., and Bradford, M. A.:\n270\nQuantifying Global Soil Carbon Losses in Response to Warming, Nature, 540, 104–108, https://doi.org/10.1038/nature20150, 2016. Fontaine, S., Barot, S., Barré, P., Bdioui, N., Mary, B., and Rumpel, C.: Stability of organic carbon in deep soil layers controlled by fresh\ncarbon supply, Nature, 450, 277–280, 2007. References Contribution of Working Group I to the Fifth Assessment Report of the Intergov-\nernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295 IPCC: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergov\nernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295 ernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295\nJenkinson D S Adams D E and Wild A : Model Estimates of CO 2 Emissions from Soil in Response to Global Warming Nature 351 ernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295\nJenkinson, D. S., Adams, D. E., and Wild, A.: Model Estimates of CO 2 Emissions from Soil in Response to Global Warming, Nature, 351,\n304–306, 1991. ernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295\nJenkinson, D. S., Adams, D. E., and Wild, A.: Model Estimates of CO 2 Emissions from Soil in Response to Global Warming, Nature, 351,\n304–306, 1991. Jia, J., Cao, Z., Liu, C., Zhang, Z., Lin, L., Wang, Y., Haghipour, N., Wacker, L., Bao, H., Dittmar, T., Simpson, M. J., Yang, H., Crowther,\nT. W., Eglinton, T. I., He, J.-S., and Feng, X.: Climate Warming Alters Subsoil but Not Topsoil Carbon Dynamics in Alpine Grassland, ernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013. 295\nJenkinson, D. S., Adams, D. E., and Wild, A.: Model Estimates of CO 2 Emissions from Soil in Response to Global Warming, Nature, 351,\n304–306, 1991. Jia J Cao Z Liu C Zhang Z Lin L Wang Y Haghipour N Wacker L Bao H Dittmar T Simpson M J Yang H Crowther Jenkinson, D. S., Adams, D. E., and Wild, A.: Model Estimates of CO 2 Emissions from Soil in Response to Global Warming, Nature, 351,\n304–306, 1991. Jia, J., Cao, Z., Liu, C., Zhang, Z., Lin, L., Wang, Y., Haghipour, N., Wacker, L., Bao, H., Dittmar, T., Simpson, M. J., Yang, H., Crowther,\nT. W., Eglinton, T. I., He, J.-S., and Feng, X.: Climate Warming Alters Subsoil but Not Topsoil Carbon Dynamics in Alpine Grassland,\nGlobal Change Biology, 25, 4383–4393, https://doi.org/10.1111/gcb.14823, 2019. References A., Stevens, B., Stouffer, R. J., and Taylor, K. E.: Overview of the Coupled Model In-\ntercomparison Project Phase 6 (CMIP6) Experimental Design and Organization, Geoscientific Model Development, 9, 1937–1958, Ellert, B. H. and Bettany, J. R.: Calculation of Organic Matter and Nutrients Stored in Soils under Contrasting Management Regimes,\nCanadian Journal of Soil Science, 75, 529–538, 1995. Canadian Journal of Soil Science, 75, 529–538, 1995. Eyring, V., Bony, S., Meehl, G. A., Senior, C. A., Stevens, B., Stouffer, R. J., and Taylor, K. E.: Overview of the Coupled Model In-\ntercomparison Project Phase 6 (CMIP6) Experimental Design and Organization, Geoscientific Model Development, 9, 1937–1958,\nh\n//d i\n/10 5194/\nd 9 193\n2016 2016\n285 Eyring, V., Bony, S., Meehl, G. A., Senior, C. A., Stevens, B., Stouffer, R. J., and Taylor, K. E.: Overview of the Coupled Model In-\ntercomparison Project Phase 6 (CMIP6) Experimental Design and Organization, Geoscientific Model Development, 9, 1937–1958,\nhttps://doi.org/10.5194/gmd-9-1937-2016, 2016. 285 https://doi.org/10.5194/gmd-9-1937-2016, 2016. 285\nFontaine, S., Barot, S., Barré, P., Bdioui, N., Mary, B., and Rumpel, C.: Stability of organic carbon in deep soil layers controlled by fresh\ncarbon supply, Nature, 450, 277–280, 2007. 22 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Halldórsson, B. and Sigbjörnsson, R.: The Mw6.3 Ölfus Earthquake at 15:45 UTC on 29 May 2008 in South Iceland: ICEARRAY Strong-\nMotion Recordings, Soil Dynamics and Earthquake Engineering, 29, 1073–1083, https://doi.org/10.1016/j.soildyn.2008.12.006, 2009. Hanson, P. J., Griffiths, N. A., Iversen, C. M., Norby, R. J., Sebestyen, S. D., Phillips, J. R., Chanton, J. P., Kolka, R. K., Malhotra, A.,\n290\nOleheiser, K. C., et al.: Rapid net carbon loss from a whole-ecosystem warmed Peatland, AGU Advances, 1, e2020AV000 163, 2020. Ilyina, T. and Friedlingstein, P.: WCRP Grand Challenge-Carbon Feedbacks in the Climate System, Tech. rep., Tech. rep., WCRP,\nhttps://www. wcrp-climate. org/JSC37/Documents . .., 2016. IPCC Cli\nCh\n2013 Th Ph\ni\nl S i\nB\ni\nC\nib i\nf W ki\nG\nI\nh Fif h A\nR\nf h I IPCC: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Asse IPCC: Climate Change 2013: The Physical Science Basis. References A.: Geothermally Warmed Soils Reveal Persistent Increases in the Respiratory Costs of Soil Microbes Contributing to Substantial C Marañón-Jiménez, S., Soong, J. L., Leblans, N. I. W., Sigurdsson, B. D., Peñuelas, J., Richter, A., Asensio, D., Fransen, E., and Janssens,\nI. A.: Geothermally Warmed Soils Reveal Persistent Increases in the Respiratory Costs of Soil Microbes Contributing to Substantial C\nLosses, Biogeochemistry, 138, 245–260, https://doi.org/10.1007/s10533-018-0443-0, 2018. 310 Losses, Biogeochemistry, 138, 245–260, https://doi.org/10.1007/s10533-018-0443-0, 2018. 310\nMelillo, J. M., Frey, S. D., DeAngelis, K. M., Werner, W. J., Bernard, M. J., Bowles, F. P., Pold, G., Knorr, M. A., and Grandy, A. S.:\nLong-Term Pattern and Magnitude of Soil Carbon Feedback to the Climate System in a Warming World, Science, 358, 101–105,\nhttps://doi.org/10.1126/science.aan2874, 2017. Nishina, K., Ito, A., Beerling, D. J., Cadule, P., Ciais, P., Clark, D. B., Falloon, P., Friend, A. D., Kahana, R., Kato, E., Keribin, R., Lucht, Losses, Biogeochemistry, 138, 245 260, https://doi.org/10.1007/s10533 018 0443 0, 2018. 310\nMelillo, J. M., Frey, S. D., DeAngelis, K. M., Werner, W. J., Bernard, M. J., Bowles, F. P., Pold, G., Knorr, M. A., and Grandy, A. S.:\nLong-Term Pattern and Magnitude of Soil Carbon Feedback to the Climate System in a Warming World, Science, 358, 101–105,\nhttps://doi.org/10.1126/science.aan2874, 2017. Nishina, K., Ito, A., Beerling, D. J., Cadule, P., Ciais, P., Clark, D. B., Falloon, P., Friend, A. D., Kahana, R W., Lomas, M., Rademacher, T. T., Pavlick, R., Schaphoff, S., Vuichard, N., Warszawaski, L., and Yokohata, T.: Quantifying Uncer-\n315\ntainties in Soil Carbon Responses to Changes in Global Mean Temperature and Precipitation, Earth System Dynamics, 5, 197–209,\nhttps://doi.org/Nishina, K.; Ito, A.; Beerling, D.J.; Cadule, P.; Ciais, P.; Clark, D.B.; Falloon, P.; Friend, A.D.; Kahana, R.; Kato, E.;\nKeribin, R.; Lucht, W.; Lomas, M.; Rademacher, T.T.; Pavlick, R.; Schaphoff, S.; Vuichard, N.; Warszawaski, L.; Yokohata, T.. 2014\nQuantifying uncertainties in soil carbon responses to changes in global mean temperature and precipitation. Earth System Dynamics, 5 (1). 197-209. https://doi.org/10.5194/esd-5-197-2014 <https://doi.org/10.5194/esd-5-197-2014>, 2014. 320\nO’Gorman, E. J., Benstead, J. P., Cross, W. F., Friberg, N., Hood, J. M., Johnson, P. W., Sigurdsson, B. D., and Woodward, G.: Climate\nChange and Geothermal Ecosystems: Natural Laboratories, Sentinel Systems, and Future Refugia, Global Change Biology, 20, 3291–\n3299, https://doi.org/10.1111/gcb.12602, 2014. Osher, L. J., Matson, P. A., and Amundson, R.: Effect of Land Use Change on Soil Carbon in Hawaii, Biogeochemistry, 65, 20, 2003. 320 (1). 197 209. References 300 Jia, J., Cao, Z., Liu, C., Zhang, Z., Lin, L., Wang, Y., Haghipour, N., Wacker, L., Bao, H., Dittmar, T., Simpson, M. J., Yang, H., Crowther,\nT. W., Eglinton, T. I., He, J.-S., and Feng, X.: Climate Warming Alters Subsoil but Not Topsoil Carbon Dynamics in Alpine Grassland, Global Change Biology, 25, 4383–4393, https://doi.org/10.1111/gcb.14823, 2019. 300\nLeblans, N. I. W., Sigurdsson, B. D., Vicca, S., Fu, Y., Penuelas, J., and Janssens, I. A.: Phenological Responses of Icelandic Subarctic Grass-\nlands to Short-Term and Long-Term Natural Soil Warming, Global Change Biology, 23, 4932–4945, https://doi.org/10.1111/gcb.13749,\n2017. Lin, W., Li, Y., Yang, Z., Giardina, C. P., Xie, J., Chen, S., Lin, C., Kuzyakov, Y., and Yang, Y.: Warming Exerts Greater Leblans, N. I. W., Sigurdsson, B. D., Vicca, S., Fu, Y., Penuelas, J., and Janssens, I. A.: Phenological Responses of Icelandic Subarctic Grass-\nlands to Short-Term and Long-Term Natural Soil Warming, Global Change Biology, 23, 4932–4945, https://doi.org/10.1111/gcb.13749,\n2017. 2017. Lin, W., Li, Y., Yang, Z., Giardina, C. P., Xie, J., Chen, S., Lin, C., Kuzyakov, Y., and Yang, Y.: Warming Exerts Greater\nImpacts on Subsoil than Topsoil CO2 Efflux in a Subtropical Forest, Agricultural and Forest Meteorology, 263, 137–146,\n305 Lin, W., Li, Y., Yang, Z., Giardina, C. P., Xie, J., Chen, S., Lin, C., Kuzyakov, Y., and Yang, Y.: Warming Exerts Greater\nImpacts on Subsoil than Topsoil CO2 Efflux in a Subtropical Forest, Agricultural and Forest Meteorology, 263, 137–146,\n305\nhttps://doi.org/10.1016/j.agrformet.2018.08.014, 2018. g\ny\ng\ng\nImpacts on Subsoil than Topsoil CO2 Efflux in a Subtropical Forest, Agricultural and Forest Meteorology, 263, 137–146,\n305\nhttps://doi.org/10.1016/j.agrformet.2018.08.014, 2018. Á Impacts on Subsoil than Topsoil CO2 Efflux in a Subtropical Forest, Agricultural and Forest Meteorology, 263, 137–146,\n305\nhttps://doi.org/10.1016/j.agrformet.2018.08.014, 2018. Magnússon, Á. and Vídalín, P.: Jarðabók. Annað bindi [The farm register of Iceland], 1708. Marañón-Jiménez, S., Soong, J. L., Leblans, N. I. W., Sigurdsson, B. D., Peñuelas, J., Richter, A., Asensio, D., Fransen, E., and Janssens,\nI. A.: Geothermally Warmed Soils Reveal Persistent Increases in the Respiratory Costs of Soil Microbes Contributing to Substantial C Magnússon, Á. and Vídalín, P.: Jarðabók. Annað bindi [The farm register of Iceland], 1708. Magnússon, Á. and Vídalín, P.: Jarðabók. Annað bindi [The farm register of Iceland], 1708. Marañón-Jiménez, S., Soong, J. L., Leblans, N. I. W., Sigurdsson, B. D., Peñuelas, J., Richter, A., Asensio, D., Fransen, E., and Janssens,\nI. Osher, L. J., Matson, P. A., and Amundson, R.: Effect of Land Use Change on Soil Carbon in Hawaii, Biogeochemistry, 65, 20, 2003. References E., Holmstrup, M., Ilieva-Makulec, K.,\nK\nT M\ni\ndó i\nB\nl\nG\nh\nl E\nN\nl Cli\nCh\nE\ni\nTh F\nH\nR\nh Si\ni Soong, J. L., Castanha, C., Hicks Pries, C. E., Ofiti, Porras, R. C., and Riley: Five Years of Whole-Soil Warming Led to Loss of Subsoil\n345\nCarbon Stocks and Increased CO2 Efflux, Science Advances, 0, 2020a. Soong, J. L., Phillips, C. L., Ledna, C., Koven, C. D., and Torn, M. S.: CMIP5 models predict rapid and deep soil warming over the 21st Soong, J. L., Castanha, C., Hicks Pries, C. E., Ofiti, Porras, R. C., and Riley: Five Years of Whole-Soil Warming Led to Loss of Subsoil\n345\nCarbon Stocks and Increased CO2 Efflux, Science Advances, 0, 2020a. Soong, J. L., Phillips, C. L., Ledna, C., Koven, C. D., and Torn, M. S.: CMIP5 models predict rapid and deep soil warming over the 21st\ncentury, Journal of Geophysical Research: Biogeosciences, 125, e2019JG005 266, 2020b. Tian, Q., Yang, X., Wang, X., Liao, C., Li, Q., Wang, M., Wu, Y., and Liu, F.: Microbial Community Mediated Response of Or- Soong, J. L., Castanha, C., Hicks Pries, C. E., Ofiti, Porras, R. C., and Riley: Five Years of Whole-Soil Warming Led to Loss of Subsoil\n345\nCarbon Stocks and Increased CO2 Efflux, Science Advances, 0, 2020a. Soong, J. L., Phillips, C. L., Ledna, C., Koven, C. D., and Torn, M. S.: CMIP5 models predict rapid and deep soil warming over the 21st\ncentury, Journal of Geophysical Research: Biogeosciences, 125, e2019JG005 266, 2020b. Tian, Q., Yang, X., Wang, X., Liao, C., Li, Q., Wang, M., Wu, Y., and Liu, F.: Microbial Community Mediated Response of Or- Q., Yang, X., Wang, X., Liao, C., Li, Q., Wang, M., Wu, Y., and Liu, F.: Microbial Community Med Tian, Q., Yang, X., Wang, X., Liao, C., Li, Q., Wang, M., Wu, Y., and Liu, F.: Microbial Community Mediated Response of Or\nganic Carbon Mineralization to Labile Carbon and Nitrogen Addition in Topsoil and Subsoil, Biogeochemistry, 128, 125–139,\n350\nhttps://doi.org/10.1007/s10533-016-0198-4, 2016. ganic Carbon Mineralization to Labile Carbon and Nitrogen Addition in Topsoil and Subsoil, Biogeochemistry, 128, 125–139,\n350\nhttps://doi.org/10.1007/s10533-016-0198-4, 2016. Todd-Brown, K. E., Zheng, B., and Crowther, T. W.: Field-Warmed Soil Carbon Changes Imply High 21st-Century Modeling Uncertainty,\nBi\ni\n15 3659 3671 2018 https://doi.org/10.1007/s10533-016-0198-4, 2016. Todd-Brown, K. E., Zheng, B., and Crowther, T. References https://doi.org/10.5194/esd 5 197 2014 <https://doi.org/10.5194/esd 5 197 2014>, 2014. 320\nO’Gorman, E. J., Benstead, J. P., Cross, W. F., Friberg, N., Hood, J. M., Johnson, P. W., Sigurdsson, B. D., and Woodward, G.: Climate\nChange and Geothermal Ecosystems: Natural Laboratories, Sentinel Systems, and Future Refugia, Global Change Biology, 20, 3291–\n3299, https://doi.org/10.1111/gcb.12602, 2014. ,\np\ng\ng\n,\nOsher, L. J., Matson, P. A., and Amundson, R.: Effect of Land Use Change on Soil Carbon in Hawaii, Biogeochemistry, 65, 20, 2003. 23 https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. Pinheiro, J., Bates, D., DebRoy, S., Sarkar, D., and R Core Team: nlme: Linear and Nonlinear Mixed Effects Models, https://CRAN.R-project. 325\norg/package=nlme, r package version 3.1-152, 2021. Pinheiro, J., Bates, D., DebRoy, S., Sarkar, D., and R Core Team: nlme: Linear and Nonlinear Mixed Effects Models, https://CRAN.R-project. 325\norg/package=nlme, r package version 3.1-152, 2021. Poeplau, C., Sigurðsson, P., and Sigurdsson, B. D.: Depletion of Soil Carbon and Aggregation after Strong Warming of a Subarctic Andosol\nunder Forest and Grassland Cover, SOIL, 6, 115–129, https://doi.org/10.5194/soil-6-115-2020, 2020. R Development Core Team, R.: R: A Language and Environment for Statistical Computing, R foundation for statistical computing Vienna,\nAustria, 2011. 330\nRadujkovi´c, D., Verbruggen, E., Sigurdsson, B. D., Leblans, N. I., Janssens, I. A., Vicca, S., and Weedon, J. T.: Prolonged Exposure Does\nNot Increase Soil Microbial Community Compositional Response to Warming along Geothermal Gradients, FEMS microbiology ecology,\n94, fix174, 2018. Rumpel, C. and Kögel-Knabner, I.: Deep soil organic matter—a key but poorly understood component of terrestrial C cycle, Plant and soil,\n338 143 158 2011\n335 Poeplau, C., Sigurðsson, P., and Sigurdsson, B. D.: Depletion of Soil Carbon and Aggregation after Strong Warming of a Subarctic Andosol\nunder Forest and Grassland Cover, SOIL, 6, 115–129, https://doi.org/10.5194/soil-6-115-2020, 2020. under Forest and Grassland Cover, SOIL, 6, 115–129, https://doi.org/10.5194/soil-6-115-2020, 2020. R Development Core Team, R.: R: A Language and Environment for Statistical Computing, R foundation for statistical computing Vienna,\nAustria, 2011. 330 R Development Core Team, R.: R: A Language and Environment for Statistical Computing, R foundation for statistical computing Vienna,\nAustria, 2011. 330 Austria, 2011. 330\nRadujkovi´c, D., Verbruggen, E., Sigurdsson, B. D., Leblans, N. I., Janssens, I. A., Vicca, S., and Weedon, J. References T.: Prolonged Exposure Does\nNot Increase Soil Microbial Community Compositional Response to Warming along Geothermal Gradients, FEMS microbiology ecology,\n94, fix174, 2018. Rumpel, C. and Kögel-Knabner, I.: Deep soil organic matter—a key but poorly understood component of terrestrial C cycle, Plant and soil, Radujkovi´c, D., Verbruggen, E., Sigurdsson, B. D., Leblans, N. I., Janssens, I. A., Vicca, S., and Weedon, J. T.: Prolonged Exposure Does\nNot Increase Soil Microbial Community Compositional Response to Warming along Geothermal Gradients, FEMS microbiology ecology,\n94, fix174, 2018. Rumpel, C. and Kögel-Knabner, I.: Deep soil organic matter—a key but poorly understood component of terrestrial C cycle, Plant and soil,\n338, 143–158, 2011. 335 338, 143–158, 2011. 335\nScharlemann, J. P., Tanner, E. V., Hiederer, R., and Kapos, V.: Global Soil Carbon: Understanding and Managing the Largest Terrestrial\nCarbon Pool, Carbon Management, 5, 81–91, https://doi.org/10.4155/cmt.13.77, 2014. Shi, Z., Crowell, S., Luo, Y., and Moore, B.: Model Structures Amplify Uncertainty in Predicted Soil Carbon Responses to Climate Change,\nNature communications, 9, 1–11, 2018. ,\n,\n335\nScharlemann, J. P., Tanner, E. V., Hiederer, R., and Kapos, V.: Global Soil Carbon: Understanding and Managing the Largest Terrestrial\nCarbon Pool, Carbon Management, 5, 81–91, https://doi.org/10.4155/cmt.13.77, 2014. Shi, Z., Crowell, S., Luo, Y., and Moore, B.: Model Structures Amplify Uncertainty in Predicted Soil Carbon Responses to Climate Change,\nNature communications, 9, 1–11, 2018. Shi, Z., Allison, S. D., He, Y., Levine, P. A., Hoyt, A. M., Beem-Miller, J., Zhu, Q., Wieder, W. R., Trumbore, S., and Randerson, J. T.: The\n340\nAge Distribution of Global Soil Carbon Inferred from Radiocarbon Measurements, Nature Geoscience, 4, 1–5, 2020. Sigurdsson, B. D., Leblans, N., Dauwe, S., Guðmundsdóttir, E., Gundersen, P., G Gunnarsdóttir, G. E., Holmstrup, M., Ilieva-Makulec, K.,\nKätterer, T., Marteinsdóttir, B., et al.: Geothermal Ecosystems as Natural Climate Change Experiments: The ForHot Research Site in\nIceland as a Case Study, Icelandic Agricultural Sciences, 29, 53–71, https://doi.org/10.16886/IAS.2016.05, 2016. Shi, Z., Allison, S. D., He, Y., Levine, P. A., Hoyt, A. M., Beem-Miller, J., Zhu, Q., Wieder, W. R., Trumbore, S., and Randerson, J. T.: The\n340\nAge Distribution of Global Soil Carbon Inferred from Radiocarbon Measurements, Nature Geoscience, 4, 1–5, 2020. on of Global Soil Carbon Inferred from Radiocarbon Measurements, Nature Geoscience, 4, 1–5, 2020. Sigurdsson, B. D., Leblans, N., Dauwe, S., Guðmundsdóttir, E., Gundersen, P., G Gunnarsdóttir, G. References W.: Field-Warmed Soil Carbon Changes Imply High 21st-Century Modeling Uncertainty,\nBiogeosciences, 15, 3659–3671, 2018. Todd-Brown, K. E., Zheng, B., and Crowther, T. W.: Field-Warmed Soil Carbon Changes Imply High 21st-Century Modeling Uncertainty,\nBiogeosciences, 15, 3659–3671, 2018. van Gestel, N., Shi, Z., van Groenigen, K. J., Osenberg, C. W., Andresen, L. C., Dukes, J. S., Hovenden, M. J., Luo, Y., Michelsen,\nd ll\ni h\nh\nd\ndi i\nil\nb\ni h\ni\n55\n5 van Gestel, N., Shi, Z., van Groenigen, K. J., Osenberg, C. W., Andresen, L. C., Dukes, J. S., Hovende van Gestel, N., Shi, Z., van Groenigen, K. J., Osenberg, C. W., Andresen, L. C., Dukes, J. S., Hovenden, M. J., Luo, Y., Michelsen,\nA., Pendall, E., Reich, P. B., Schuur, E. A. G., and Hungate, B. A.: Predicting Soil Carbon Loss with Warming, Nature, 554, E4–E5,\n355\nhttps://doi.org/10.1038/nature25745, 2018. ,\n,\n,\n,\ng\n,\n,\ng,\n,\n,\n,\n,\n,\n,\n,\n,\n,\n,\nA., Pendall, E., Reich, P. B., Schuur, E. A. G., and Hungate, B. A.: Predicting Soil Carbon Loss with Warming, Nature, 554, E4–E5,\n355\nhttps://doi.org/10.1038/nature25745, 2018. Walker T W N Kaiser C Strasser F Herbold C W Leblans N I W Woebken D Janssens I A Sigurdsson B D and Richter A : A., Pendall, E., Reich, P. B., Schuur, E. A. G., and Hungate, B. A.: Predicting Soil Carbon Loss with Warming, Nature, 554, E4–E5,\n355\nhttps://doi.org/10.1038/nature25745, 2018. Walker, T. W. N., Kaiser, C., Strasser, F., Herbold, C. W., Leblans, N. I. W., Woebken, D., Janssens, I. A., Sigurdsson, B. D., and Richter, A.:\nMicrobial Temperature Sensitivity and Biomass Change Explain Soil Carbon Loss with Warming, Nature Climate Change, 8, 885–889,\nhttps://doi.org/10.1038/s41558-018-0259-x, 2018. Walker, T. W. N., Kaiser, C., Strasser, F., Herbold, C. W., Leblans, N. I. W., Woebken, D., Janssens, I. A., Sigurdsson, B. D., and Richter, A.:\nMicrobial Temperature Sensitivity and Biomass Change Explain Soil Carbon Loss with Warming, Nature Climate Change, 8, 885–889,\nhttps://doi.org/10.1038/s41558-018-0259-x, 2018. Walker, T. W. N., Janssens, I. A., Weedon, J. T., Sigurdsson, B. D., Richter, A., Peñuelas, J., Leblans, N. I. W., Bahn, M., Bartrons, M.,\n360\nDe Jonge, C., Fuchslueger, L., Gargallo-Garriga, A., Gunnarsdóttir, G. E., Marañón-Jiménez, S., Oddsdóttir, E. S., Ostonen, I., Poeplau,\nC., Prommer, J., Radujkovi´c, D., Sardans, J., Sigurðsson, P., Soong, J. L., Vicca, S., Wallander, H., Ilieva-Makulec, K., and Verbruggen, 24 https://doi.org/10.5194/bg-2021-338\nPreprint. Yost, J. L. and Hartemink, A. E.: How deep is the soil studied–an analysis of four soil science journals, Plant and soil, 452, 5–18, 2020.\n365\nZhang, J., Ekblad, A., Sigurdsson, B. D., and Wallander, H.: The Influence of Soil Warming on Organic Carbon Se-\nquestration of Arbuscular Mycorrhizal Fungi in a Sub-Arctic Grassland, Soil Biology and Biochemistry, 147, 107 826,\nhttps://doi.org/10.1016/j.soilbio.2020.107826, 2020. E.: A Systemic Overreaction to Years versus Decades of Warming in a Subarctic Grassland Ecosystem, Nature Ecology & Evolution, 4,\n101–108, https://doi.org/10.1038/s41559-019-1055-3, 2020.\nYost, J. L. and Hartemink, A. E.: How deep is the soil studied–an analysis of four soil science journals, Plant and soil, 452, 5–18, 2020.\n365\nZhang, J., Ekblad, A., Sigurdsson, B. D., and Wallander, H.: The Influence of Soil Warming on Organic Carbon Se-\nquestration of Arbuscular Mycorrhizal Fungi in a Sub-Arctic Grassland, Soil Biology and Biochemistry, 147, 107 826,\nhttps://doi.org/10.1016/j.soilbio.2020.107826, 2020.\nDOI = 10.5281/zenodo.4745479 E.: A Systemic Overreaction to Years versus Decades of Warming in a Subarctic Grassland Ecosystem, Nature Ecology & Evolution, 4,\n101–108, https://doi.org/10.1038/s41559-019-1055-3, 2020. References Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. https://doi.org/10.5194/bg-2021-338\nPreprint. Discussion started: 5 January 2022\nc⃝Author(s) 2022. CC BY 4.0 License. E.: A Systemic Overreaction to Years versus Decades of Warming in a Subarctic Grassland Ecosystem, Nature Ecology & Evolution, 4,\n101–108, https://doi.org/10.1038/s41559-019-1055-3, 2020. DOI = 10.5281/zenodo.4745479 25"
https://openalex.org/W4237330165
https://journals.abcjournal.aosis.co.za/index.php/abc/article/download/1378/1337
English
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LILIACEAE
Bothalia
1,976
cc-by
936
Aloe pictifolia Hardy, sp. nov. Aloe pictifolia Hardy, sp. nov. gradually narrowing to an acuminate apex; upper surface flat to channelled especially towards the apex, glaucous, copiously and regularly white-spotted; lower surface convex with a toothed keel near the apex, spotted; margins armed with red-brown, pun­ gent teeth up to 1 mm long, 4-5 mm apart, the inter­ spaces the same colour as the leaf. Inflorescences 2-4 borne simultaneously, simple, arcuate-ascending; peduncles 20 cm long, base plano-convex to flattened, 5-7 mm broad with 4-5 sterile, many-nerved, ovate to broadly-ovate bracts, 7-8 mm broad and tapering to an abrupt, acute point. Racemes cylindric-acumi- nate, sublaxly many flowered; 14-17 cm long and 3,5-4 cm diam., the buds spreading obliquely to horizontally, open flowers nutant; floral bracts broadly ovate, abruptly tapering to an acute point, 10 mm long, 3-4 mm broad at the base; pedicels 11-12 mm long, red-brown. Perianth scarlet red (R.C.S. 1), greenish at mouth, cylindric-trigonous, 15-16 mm long, 3-4 mm diam. near the base, base rounded; outer segments free to the base, 3-nerved, the nerves obscure for the greater part of their length, turning greenish at the apex, apices straight, subacute, scarcely spreading; inner segments free, whitish- yellow with thin edges, keel colour of the perianth for four fifths of its length turning green near the apex, apices more obtuse and slightly greenish on the inside. Stamens: filaments white, flattened; anthers orange, exserted by 1-2 mm. Style filiform, stigma eventually exserted by 1-2 mm long, 1 mm diam., pale green. Capsule not seen. Fig s . 13 and 14. Suffrutex ad 30 cm altus, 18 cm diam. Caules arcuato-ascendentes, ramosi; rami in rosulam folio- rum terminantes; foliorum bases persistentes. Folia conferta, basi amplexicaulia, 12-15 cm longa, 1-2,5 cm lata, sensim attenuata apice acuto vel acuminato, glauca; supra aliquantum plana, versus apicem canaliculata, copiose et regulatim albo-maculata; subtus convex carina prope apicem dentata, albo- maculata; margo dentibus pungentibus 1 mm longis 4-5 mm remotis armatus. Inflorescentiae 2-4 simul- taneae, simplices, arcuato-ascendentes; pedunculi 20 cm longi, basi plano-convexi vel complanati, 5-7 mm lati, 4-5-bracteati. Racemi cylindrato-acuminati, multo-flori, sublaxi, 14-17 cm longi 3,5-4 cm diam.; alabastra patentia; flori nutantes; bracteae late ovatae, abrupte acutae, 10 mm longae, basi 3-4 mm latae; pedicelli 11-12 mm longi. Perianthium scarla- tinum, ad ostium viride cylindrato-trigonum, 15-16 mm longum, prope basin 3-4 mm diam.; basis rotundata; segmenta ad basin libera. Antherae aurantiacae, 1-2 mm exsertae. A NEW SPECIES OF ALOE FROM THE HUMANSDORP DISTRICT A NEW SPECIES OF ALOE FROM THE HUMANSDORP DISTRICT gradually narrowing to an acuminate apex; upper surface flat to channelled especially towards the apex, glaucous, copiously and regularly white-spotted; lower surface convex with a toothed keel near the apex, spotted; margins armed with red-brown, pun­ gent teeth up to 1 mm long, 4-5 mm apart, the inter­ spaces the same colour as the leaf. Inflorescences 2-4 borne simultaneously, simple, arcuate-ascending; peduncles 20 cm long, base plano-convex to flattened, 5-7 mm broad with 4-5 sterile, many-nerved, ovate to broadly-ovate bracts, 7-8 mm broad and tapering to an abrupt, acute point. Racemes cylindric-acumi- nate, sublaxly many flowered; 14-17 cm long and 3,5-4 cm diam., the buds spreading obliquely to horizontally, open flowers nutant; floral bracts broadly ovate, abruptly tapering to an acute point, 10 mm long, 3-4 mm broad at the base; pedicels 11-12 mm long, red-brown. Perianth scarlet red (R.C.S. 1), greenish at mouth, cylindric-trigonous, 15-16 mm long, 3-4 mm diam. near the base, base rounded; outer segments free to the base, 3-nerved, the nerves obscure for the greater part of their length, turning greenish at the apex, apices straight, subacute, scarcely spreading; inner segments free, whitish- yellow with thin edges, keel colour of the perianth for four fifths of its length turning green near the apex, apices more obtuse and slightly greenish on the inside. Stamens: filaments white, flattened; anthers orange, exserted by 1-2 mm. Style filiform, stigma eventually exserted by 1-2 mm long, 1 mm diam., pale green. Capsule not seen. Fig s . 13 and 14. Aloe pictifolia Hardy, sp. nov. Ty pe : Cape, Humansdorp District, Patensie area, Marais sub PRE 32328 (PRE, holotype). Ty pe : Cape, Humansdorp District, Patensie area, Marais sub PRE 32328 (PRE, holotype). Plants of shrubby growth up to 30 cm tall. Stems arcuate-ascending, branched from the base, short or up to 12 cm long, rosettes dividing and subdividing up to 18 cm across; old leaf bases persistent. Leaves crow­ ded, basally sheathing-amplexicaul, 12-15 cm long, suberectly spreading, 1-2,5 cm broad at the base, 63 VARIOUS AUTHORS F i g . 13.—Aloe pictifolia, h a b it. F i g . 13.—Aloe pictifolia, h a b it. F i g . 14.—Aloe pictifolia. One of rosettes with inflorescences. F i g . 14.—Aloe pictifolia. One of rosettes with inflorescences. 64 NOTES ON AFRICAN PLANTS This new species was first collected in 1971 by Mr G. X. Marais, formerly of Pretoria and now of Newcastle in Natal, in the Humansdorp District of the southern Cape. The precise locality has not been revealed, because it is feared that Aloe enthusiasts might deplete the natural populations in the veld. This plant has obviously escaped detection until now, because of its situation in stony, rugged country. The species appears to belong to the series Echinatae (Humiles), the imple inflorescence and cylindric- trigonous perianth being not unlike those of A. krapohliana Marl. In general habit and leaf texture it is, however, very different: the plant is branched from the base with narrow, copiously and regularly spotted leaves. The plant has been called A. pictifolia, because of its “ painted leaves”. D. S. Ha r d y
https://openalex.org/W3036283505
https://www.e3s-conferences.org/10.1051/e3sconf/202017401056/pdf
English
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Theoretical Background of Quarry Wastewater Filtering Through Filters of Coarse-Grained Blasted Overburden Rocks
E3S web of conferences
2,020
cc-by
4,207
* Corresponding author: markovso@kuzstu.ru Theoretical Background of Quarry Wastewater Filtering Through Filters of Coarse-Grained Blasted Overburden Rocks Eugene Makridin1, Sergey Markov2,*, Elena Murko2, Yuri Lesin2 , and Mark Hellmer3 1JSC SUEK-Kuzbass, 1 Vasilieva st., Leninsk-Kuznetskiy, Kemerovo region, 652507, Russia 2T.F. Gorbachev Kuzbass State Technical University, 28 Vesennyaya St., Kemerovo, 650000, Russia 3Imperial College London, SW7 2AZ South Kensington, London, United Kingdom 3Imperial College London, SW7 2AZ South Kensington, London, United Kingdom Abstract. Quarry wastewater is the main pollutant for the surface and underground natural water bodies during mining operations. Negative impact is expressed in contamination of natural reservoirs with fine suspended particles and salt solutions. To reduce the harmful impact of quarry wastewater they are treated using artificial filtering massifs. Such massifs are commonly constructed using artificial and natural sorbents. The retention of particles in the filtering layer is the result of two main processes: the adhesion of fine particles of suspension to the surface of the particles of the artificial filtering massif and the jamming of coarser particles in the pores of the filter layer. Simultaneously with the processes of contaminants capture, the process of contaminants washing out of the filter array may occur. It occurs when the particle size distribution of the filter layer is unappropriated and filtration speeds are high, and may be accompanied by deformation of the filter media. © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium https://doi.org/10.1051/e3sconf/202017401056 2 Materials and Methods In general, the filtration process is the movement in a porous medium of a liquid carrying solid and gaseous particles and deforming the soil. In general, the filtration process is the movement in a porous medium of a liquid carrying solid and gaseous particles and deforming the soil. It is possible to observe uniform and non-uniform filtration deformations. Uniform filtration deformation is defined as deformation in which the cross-section ω of the "effective filtration stream" changes only in time, but does not change in coordinate, i.e. . 0    x  Non-uniform filtration deformation is defined as deformation in which the cross-section of the filtration jet changes both in time and length. The case of "pure" suffosion is an example of uniform filtration deformation, when along the length of the pore channel evenly detach small particles that no longer precipitate, and are carried out by the filtration flow outside the boundaries of the considered section of the porous medium. An example of non-uniform filtration deformation is the case of suffosion, when fine particles are detach and deposited during the filtration process. In this case the degree of pore channel filling changes both in time and in coordinate. The same can be said about the process of siltation or colmation of the porous medium by the incoming flow with suspended fine particles, when the cross-section of the pore channels changes in time and along the length of the filtration path. The volume of suspended solids a* carried in a unit of time by the filtration flow will be a* = η1u (1) (1) where u – true speed of liquid movement in pore channels; η1 - "reduced" value of solids flow at u = 1.0. The differential equation of colmation in this case takes the form of u A t x      (2) (2) where A =η1·η2 , η2 – proportionality coefficient. A =η1·η2 , η2 – proportionality coefficient. 1 Introduction When a mine wastewater containing solid suspended particles is filtered, the basic physical properties of the porous medium – porosity, permeability, water saturation and volume weight – are changed. These phenomena are called filtration deformations of the soil. Such filtration deformations refer to: Such filtration deformations refer to: - soil colmation or silting – settling in the pores by coarser soil of small particles transported by a filtration flow. In this case, the permeability of the soil (if it is colmated) may be significantly reduced and filtration heads may increase, which may cause other filtration deformations or reduce the stability of slope structures [1]; - mechanical suffosion or the removal of sand particles from coarser soil, or the movement of fine particles from one part of the soil to another one; and chemical suffocation, manifested by the dissolution of salts in the soil [2, 3]. Suffosion is a very common type of filtration deformation, which may occur at the base of dams, in earth dams and in stone mounts of slopes with high uniformity coefficient of size distribution of the soil; E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium https://doi.org/10.1051/e3sconf/202017401056 - seepage head, or destruction of an unloaded part of a rock massif. This type of the filtration deformation usually occurs in sandy soils. Such deformation is accompanied by increased localized filtration. The weight of the soil itself, the weight of the load suspended in water, and the adhesion of the soil are impeded to seepage head. Works of K. Tertsagi, R. N. Davidenkov, B. C. Baumgart, B. C. Istomina, A. A. Nichyporovich and others are devoted to the problems of prevention such filtration deformations. 2 Materials and Methods Patrashev [4] it was obtained that the value η for colmation should be about 5-6 and that the smaller particles of suspension will be mainly carried by filtration flow outside the colmatable soil section. y It is obtained the expression to determine the average value of the coefficient of permeability k at a depth of lk after time t (t – duration of the colmation process): (6) 0 2 2 0 , 1 2 k k u t D          (6) where k0 is the initial value of the coefficient permeability of the colmatured soil; u0 is the initial true speed of the liquid in the soil pores; D is the average value of the soil pore diameter; δ is concentration of the suspension. where k0 is the initial value of the coefficient permeability of the colmatured soil; u0 is the initial true speed of the liquid in the soil pores; D is the average value of the soil pore diameter; δ is concentration of the suspension. The thickness of the colmated layer of soil lk, to which the given value of average coefficient of permeability k belongs, is equal to the maximum depth of mass penetration of suspended particles into the soil. It is expressed in the form of (7) 0 kl u t     (7) To determine the time Tk required for soil colmation by particles of a given size (when the size of the pore in the volume of the colmated soil becomes smaller than the size of suspended particles, the process of colmation is considered complete), the author gets the dependence 2 0 2 1 k D D T u d          (8) (8) A.N. Patrashev in his studies accepts that the main forces (friction and centrifugal forces) affecting suspended solid particles in terms of their retention by the porous medium during filtration are gravity. The latter forces are caused by the curvature of the pore channels. It should be noted, however, that such assumptions are true for filtration of a suspension containing fine quartz particles. In the case of filtration of clayey and similar suspensions, the physical and chemical factor of suspended solids adhesion to soil particles and then to settled solids appears [5-10]. 2 Materials and Methods Further, on the basis of the Saint-Wennan equation: rther, on the basis of the Saint-Wennan equation: Further, on the basis of the Saint-Wennan equation: 0, Q t x       (3) (3) which expresses the relationship between the change in square ω in time and the change in fluid flow Q along the length of the flow with unsteady motion, we get the dependence between the change of porosity in time and the change of filtration speed by length in the form: which expresses the relationship between the change in square ω in time and the change in fluid flow Q along the length of the flow with unsteady motion, we get the dependence between the change of porosity in time and the change of filtration speed by length in the form: 0, n v t x       (4) (4) ere n is the porosity of the colmated soil; v is the average filtration rate. id d h d l i fl f li id i h d d lid h h where n is the porosity of the colmated soil; v is the average filtration rate. In [4] considered the pressured laminar flow of liquid with suspended solids through porous media and attempted to determine the dependencies between the main elements of the flow. The most important in this study can be considered the establishment of a parameter characterizing the possibility of penetration and retention of suspended solids in the pores of the soil, determining the value of the coefficient of permeability during the movement of 2 E3S Web of Conferences 174, 01056 (2020) https://doi.org/10.1051/e3sconf/202017401056 Vth International Innovative Mining Symposium the suspension and finding the time required for soil colmation. As the mentioned parameter the author accepted the ratio of average diameter D of soil pores to the size d of parts of the suspension: the suspension and finding the time required for soil colmation. As the mentioned parameter the author accepted the ratio of average diameter D of soil pores to the size d of parts of the suspension: i i i D d  (5) (5) i i i D d  From the experiments of A.N. where V is the filtering speed. where V is the filtering speed. The following general process equation is obtained in private derivatives: The following general process equation is obtained in private derivatives: 2 0 C C C a V b x t x t           (12) (12) Equation (12) has an infinite solution series and is difficult to use in practice. By introducing new independent variables, the equation is transformed into a functional dependence [11]: Equation (12) has an infinite solution series and is difficult to use in practice. By introducing new independent variables, the equation is transformed into a functional dependence [11]: 0 ( , ), C f x t C  (13) (13) in which parameters b and a are presented in a criterial form and are compared with reference materials when testing new filter media. in which parameters b and a are presented in a criterial form and are compared with reference materials when testing new filter media. A number of researchers believe that there is no detachment of stuck particles from the soil grains, citing the fact that is not observed removal of stuck particles with the passage of clean water through the colmated soil. К. Ives [12, 13] offer the equation linking coefficient of permeability with geometrical characteristics of filter media and sedimentation function: 0(1 ) 1 1 , x z y y f                            (14) (14) where β is the geometric constant characterizing the density of the grain layer packing; δ is the specific sedimentation of particles in a unit of the layer volume; δy is the limit value of specific sedimentation corresponding to the layer saturation; x, y, z is the empirical degree indicators; λ0 is the filtering coefficient at t = 0. 2 Materials and Methods The theory of water filtration through a layer of granular material by D.M. Mints is most widespread [7, 8]. This theory considers the filtering effect ΔC as the total result of two processes: 1) the suspended particles concentration decrease ΔC1 due to their adhesion to the grains of the filter layer; 1) the suspended particles concentration decrease ΔC1 due to their adhesion to the grains of the filter layer; 2) the suspended particles concentration increase ΔC2 due to filtering water dissipation of previously adhered particles, i.e. 2) the suspended particles concentration increase ΔC2 due to filtering water dissipation of previously adhered particles, i.e. 1 2, C C C    (9) (9) where ΔC the amount of suspended solids detained by the filter layer with thickness x in the time period t. where ΔC the amount of suspended solids detained by the filter layer with thickness x in the time period t. p Thus, the filtering kinetics equation is written as p Thus, the filtering kinetics equation is written as , C b C a x         (10) (10) 3 3 E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium E3S Web of Conferences 174, 01056 (2020) https://doi.org/10.1051/e3sconf/202017401056 E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium Vth International Innovative Mining Symposium where b and a – filtration parameters that determine the intensity of adhesion and detachment of particles, respectively, and depend on the conditions of filtration; ρ – saturation density of the granular layer by sediment. where b and a – filtration parameters that determine the intensity of adhesion and detachment of particles, respectively, and depend on the conditions of filtration; ρ – saturation density of the granular layer by sediment. y g y y The equation of the balance of substances in this case has the form: , C V t x       (11) (11) 3 Results and Discussion The total filtration flow rate (and therefore the average filtration rate) was kept constant by means of a speed regulator and the pressure varied accordingly. Further studies have shown that the suspension concentration is kept constant during the filtration of the suspension only when the speed in the pore channels does not change. Concentration will increase with increasing speed of the suspension, and, conversely, concentration of the suspension δ will decrease with decreasing speed of the mixture [19]. p g p [ ] In Kuzbass quarry wastewaters before the artificial filtering massifs has the following main pollutants: - suspended solids (containing mineral and coal particles); - soluble salts (sulfates, carbonates, chlorides, nitrates, nitrites entering the water as a res - soluble salts (sulfates, carbonates, chlorides, nitrates, nitrites entering the water as a result of leaching activated by the infiltration of groundwater and surface water through the destroyed rocks, as well as the washout of explosion products during drilling and blasting operations); - soluble salts (sulfates, carbonates, chlorides, nitrates, nitrites entering the water as a result of leaching activated by the infiltration of groundwater and surface water through the destroyed rocks, as well as the washout of explosion products during drilling and blasting operations); - oil products (entering the soils and then into the water during the work of the extraction, loading and transport equipment). - oil products (entering the soils and then into the water during the work of the extraction, loading and transport equipment). Waters are subject to biological contamination in the smallest degree during mining. It contamination is activated when the water is saturated with oxygen and, therefore, the subsequent active growth of microalgae and aerobic bacteria. The negative impact on the environment of discharged wastewaters from mining enterprises is the chemical contamination of natural surface waters with salts of heavy metals, organic substances (oil products), as well as particles of coal and overburden rocks. g Average concentrations of suspended solids and oil products in Kuzbass wastewaters are given in the table. Table 1. Content of some contaminants in quarry wastewaters of Kuzbass open pit mines. Table 1. Content of some contaminants in quarry wastewaters of Kuzbass open pit mines. 3 Results and Discussion It is indicated that the mathematical formulas describing the process of particle capture, allow to calculate the parameters of filtration with a certain degree of accuracy only in the auto model areas, limited by the condition of the experiment [14] as a result of the analysis of the current state of the theory of water filtration in granular media. In this case it is necessary to carry out preliminary experiments to determine the parameters of technological modeling or correction factors. It is concluded that the creation of a single filtering theory is a difficult task. It is shown for suspensions occurring in water supply practice the main cause of suspension particles retention by porous medium is the adhesion of these particles to the sand particles and to the settled particles of the suspension [15]. Significant experimental work on the study of river water pollution of sand filters was carried out by Eliassen R. etc. [16-18]. The experiment concepts was as follows. The experimental rectangular cross section filter with three metal and one glass walls was arranged vertically. Five piezometers were positioned at the height of the filter to measure pressure, which also served to sample the moving mixture. The filter was filled with sorted sand. The initial average porosity of the sand load was 40.8%. River water, containing 4 E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium https://doi.org/10.1051/e3sconf/202017401056 (after its settling) suspended particles by volume about 0.005%, was passed through the filter. At the same time, the filter clogging time (and thus the time of experience) was about 100-120 hours. After proper preparation of the filter, samples of the mixture moving in the filter were taken from all five tubes at different times. During each experience, two or three microscopic analyses were made to determine the average particle size of the samples taken. (after its settling) suspended particles by volume about 0.005%, was passed through the filter. At the same time, the filter clogging time (and thus the time of experience) was about 100-120 hours. After proper preparation of the filter, samples of the mixture moving in the filter were taken from all five tubes at different times. During each experience, two or three microscopic analyses were made to determine the average particle size of the samples taken. Note: The numerator has the mean values and the denominator has the maximum ones. , ( ) Vth International Innovative Mining Symposium Special attention should be paid to the cleaning of industrial wastes from oil products. Oil products are one of the most toxic contaminants, the content of which, like suspended solids, also varies widely. Taking into account the fact that the maximum allowable concentration for petroleum products for pure water in different regions varies from 0.1 to 1 and more mg / l, and for waters of fishery this value is 0.05 mg / l, treatment of quarry waste water from those contaminant is also an actual task [20, 22, 23]. Microelement analysis of industrial effluents was carried out on specific pollutants the quarry effluents. The content of dissolved calcium salts in water and changes in their concentration depend in vivo on the equilibrium of carbon salts and carbon dioxide. In very hard waters, calcium carbonate may be released if the carbon dioxide balance is disturbed and the concentration of carbon decreases. Analyses have shown that manganese is usually present in water in dissolved form as divalent ions, and in non-dissolved form as hydroxides of higher oxidation levels. At the initial concentration of manganese 0.42 mg / l (“Kedrovsky” open pit mine) after purification its amount decreases to 0.27 mg / l. At small concentrations (10-2-10-4 mg / l) the amounts of arsenic, selenium and fluorine remain constant. Reduction of lead concentration by 10-3 mg / l and increase of strontium by 0.4-1.1 mg / l have been noted. The data obtained in the laboratory confirm our conclusions about the possibility to influence the microcomponent and macrocomponent composition of the industrial effluents as a result of their filtration through the overburden rock massif. The composition of mine water after soaking in it various samples of sandstone and siltstones showed that the number of macroelements can increase, or decrease or remain constant depending on the composition of the rock. For example, the number of calcium cations decreases on all samples, while magnesium increases on three samples of rock and decreases on one siltstone. The amount of iron ions is constant on three samples (0.5 mg / l), and on the fourth (siltstone) increased to 2 mg / l. Dependence of macroelement composition of water on different composition of carbon waste (siltstones, sandstones) can be traced on other indicators: chlorides, nitrates, carbonates, ammonia, hardness and oxidation [21]. Concentrations of strontium, barium, titanium decrease on all samples. , ( ) Vth International Innovative Mining Symposium Concentrations of aluminium, iron, silicon, copper, nickel, zirconium may decrease or increase with respect to the original values. 3 Results and Discussion Enterprises (open pit mines) Pollutants content, milligram per liter (mg / l) suspended particles petroleum products “Kedrovsky” 20.5/67.2 0.42/0.8 “Chernigovets” 73.5/200 0.03/0.08 “Mokhovsky” 316.6/1094 4.82/20 “Krasnobrodsky”, site #1 712/5964 4.36/13 “Krasnobrodsky”, site #2 11.2/65.6 1.5/5 “Krasnobrodsky”, site #3 158.9/3300 2.81/10.2 “Kiselevsky” 93.5/210 8.26/28 “Prokopyevsky” 21.3/254 0.32/2.2 “Krasnogorsky” 36.7/142 0.03/0.07 “Tomusinsky” 979.7/1315.5 0.12/5 “Mezhdurechye” 398/1103.1 1.43/4.0 “Sibirginsky” 71.2/2580 0.02/0.12 “Olzherassky” 47.9/493.5 0.68/7.0 “Zadubrovsky” 23.4/40 0.012/0.012 Mean value (to mean values) 211.74 1.77 5 E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium https://doi.org/10.1051/e3sconf/202017401056 E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium References 1. W. R. Knocke, D. L. Wakeland, J Amer Water Works Assoc, 75 (1983) 2. Disorder and Granular Media, edited by D. Bideau and A. Hansen (North-Holand, Amsterdam, 1993) 3. Granular Matter – An Interdisciplinary Approach, edited by A. Metha (Springer- Verlag, New York, 1993) 4. A. N. Patrashev, Izv. NIIG, 15 (1935) 4. A. N. Patrashev, Izv. NIIG, 15 (1935) 5. D. M. Minz, Nauch. tr. Akad. kommun. hoz. im. K. D. Panfilova, 4–5 (1949) 6. D. M. Minz, Nauch. tr. Akad. kommun. hoz. im. K. D. Panfilova, 2–3 (1951) 7. D. M. Minz, Dokl. AN SSSR, 72 (1951) 7. D. M. Minz, Dokl. AN SSSR, 72 (1951) 8. D. M. Minz, Teoreticheskie osnovy tekhnologii ochistki vody (Strojizdat, Moscow, 1964) 9. S. Homaeigohar, Nanomaterials 10, 295 (2020) 10. V. Kozachyna, V. Shynkarenko, V. Gabrinets, V. Horiachkin, Scientific Bulletin of Civil Engineering, 97, 105 (2019), DOI: 10.29295/2311-7257-2019-97-3-105-109 11. D. Yu. Sirota, M. A. Babushkin, Journal of Mining and Geotechnical Engineering, 2, 65 (2018), DOI: 10.26730/2618-7434-2018-2-65-74 12. K. I. Ives, Water Research, 4 (1970) 13. K. I. Ives, J. Inst. Water Eng, 25 (1971) 14. C. Ghilaglia, L. de Arcangelis, J. Hinch, E. Guazzelli, Phys. Rev. E, 53, R3028 (1996 14. C. Ghilaglia, L. de Arcangelis, J. Hinch, E. Guazzelli, Phys. Rev. E, 53, R3028 (1996) 15. D. M. Minz, Dokl. AN SSSR, 72 (1991) 14. C. Ghilaglia, L. de Arcangelis, J. Hinch, E. Guazzelli, Phys. Rev. E, 53, R3028 (1996) 15. D. M. Minz, Dokl. AN SSSR, 72 (1991) 15. D. M. Minz, Dokl. AN SSSR, 72 (1991) 15. D. M. Minz, Dokl. AN SSSR, 72 (1991) 16. R. Eliassen, J. of the Amer. water works Assoc., 33 (2014) 17. A. Mallik, Md. A. Arefin, JMERD, 41, 156 (2018), DOI: 10.7508/JMERD.2018.01.0 18. O. Akuzuo, U. Eunice, I. Cynthia, Waste Water - Evaluation and Management (Intech Europe, Croatia, 2011). DOI: 10.5772/16001 19. H. I. Abdel-Shafy, M. A. Salem, M. S .M. Mansour, M. A. El-Khateeb, S. H. Abdel- Shafy, Egyptian J Chem, 61, 1039 (2018), DOI: 10.21608/EJCHEM.2018.3731.1316 20. V. A. Kalashnikov, A. V. Gorbachev, Journal of Mining and Geotechnical Engineering, 3, 56 (2018), DOI: 10.26730/2618-7434-2018-3-56-79 21. O. O. Garshin, Z. A. Startseva, Journal of Mining and Geotechnical Engineering, 2, 33 (2019), DOI: 10.26730/2618-7434-2019-2-33-41 22. M. Tyulenev, S. Markov, E. Makridin, Yu. Lesin, V. Gogolin, E3S Web Conf., 105, 02022 (2019) 23. Yu. Lesin, V. Gogolin, E. Murko, S. Markov, J. 4 Conclusion 1. The existing scheme of quarry wastewaters treatment at the enterprise has both advantages and disadvantages; taking into account further development of mining works and potential increase of production capacity, it is necessary to reconstruct treatment facilities and adjust their parameters. 2. Preliminary assessment of overburden rocks in the “Kamyshansky” open pit shows that it can be used as an artificial filtering massif load. 2. Preliminary assessment of overburden rocks in the “Kamyshansky” open pit shows that it can be used as an artificial filtering massif load. 3. The location of the artificial filtering massif prototype with three parallel branches has been selected to determine the best cleaning performance. It is proposed to use a reinforced concrete tray, a metal pipe and natural soil as a bedding surface. 4. Geometric parameters of the artificial filtering massif are proposed to be preliminary determined by the existing methodology, taking into account amendments to the qualitative and quantitative composition of the quarry wastewaters, as well as physical and mechanical properties of overburden rocks of the site. 6 6 https://doi.org/10.1051/e3sconf/202017401056 E3S Web of Conferences 174, 01056 (2020) E3S Web of Conferences 174, 01056 (2020) Vth International Innovative Mining Symposium Vth International Innovative Mining Symposium References Kretschmann, E3S Web Conf., 41, 01039 (2018) 7
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Neuropathic Pain Develops Normally in Mice Lacking both Na<sub>v</sub>1.7 and Na<sub>v</sub>1.8
Molecular pain
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BioMed Central BioMed Central BioMed Central Open Ac Research Neuropathic pain develops normally in mice lacking both Nav1.7 and Nav1.8 Mohammed A Nassar, Alessandra Levato, L Caroline Stirling and John N Wood* Open Access Address: Molecular Nociception Group, and London Pain Consortium, Department of Biology, University College London, Gower Street, WC1E 6BT London UK Address: Molecular Nociception Group, and London Pain Consortium, Department of Biology, University College London, Gower Street, WC1E 6BT, London, UK Email: Mohammed A Nassar - M.nassar@ucl.ac.uk; Alessandra Levato - Alessandra_Levato@yahoo.it; L Caroline Stirling - C.Stirling@ucl.ac.uk; John N Wood* - J.wood@ucl.ac.uk * Corresponding author * Corresponding author Published: 22 August 2005 Molecular Pain 2005, 1:24 doi:10.1186/1744-8069-1-24 Received: 04 August 2005 Accepted: 22 August 2005 This article is available from: http://www.molecularpain.com/content/1/1/24 © 2005 Nassar et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Received: 04 August 2005 Accepted: 22 August 2005 This article is available from: http://www.molecularpain.com/content/1/1/24 © 2005 Nassar et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. © 2005 Nassar et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Two voltage gated sodium channel α-subunits, Nav1.7 and Nav1.8, are expressed at high levels in nociceptor terminals and have been implicated in the development of inflammatory pain. Mis- expression of voltage-gated sodium channels by damaged sensory neurons has also been implicated in the development of neuropathic pain, but the role of Nav1.7 and Nav1.8 is uncertain. Here we show that deleting Nav1.7 has no effect on the development of neuropathic pain. Double knockouts of both Nav1.7 and Nav1.8 also develop normal levels of neuropathic pain, despite a lack of inflammatory pain symptoms and altered mechanical and thermal acute pain thresholds. These studies demonstrate that, in contrast to the highly significant role for Nav1.7 in determining inflammatory pain thresholds, the development of neuropathic pain does not require the presence of either Nav1.7 or Nav1.8 alone or in combination. of VGSC in humans are significant factors in aetiology of neuronal diseases [4]. Background g Voltage gated sodium channels (VGSC) underlie the elec- trical excitability of nerve and muscle. VGSCs consist of pore forming α-subunits and auxiliary β-subunits. There are ten cloned α-subunits and 4 β-subunits. The β-subu- nits modulate the localisation, expression and functional properties of α-subunits [1]. Different α-subunits have distinct electrophysiological and pharmacological proper- ties [2]. The complex pattern of expression of α-subunits may imply special roles for particular subunits in different cell types [3]. Many loss- as well as gain-of-function muta- tions of α-subunits have been identified in human condi- tions characterised with epilepsy, seizures, ataxia and increased sensitivity to pain. This suggests that mutations Nociceptors are a subset of sensory neurons that respond to noxious thermal, mechanical and chemical stimuli. Nociceptors express multiple subtypes of α-subunits [3]. Tissue and nerve damage leads to changes in expression and function of α-subunits that in turn can lead to change in the excitability of sensory neurons. Changes in the excitability of sensory neurons are thought to underlie some chronic pain conditions [5,6]. Nav1.8 and Nav1.7 are two α-subunits that are abundant in nociceptive sen- sory neurons [3,7,8]. Nav1.8 is expressed exclusively in sensory neurons and is not found in the CNS [9]. Func- tional characterization of Nav1.8 positive neurons Page 1 of 9 (page number not for citation purposes) Page 1 of 9 (page number not for citation purposes) Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice Figure 1 Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice. PCR genotyping of mice gener- ated by breeding homozygous Nav1.8Cre/heterozygous floxed Nav1.7 mice with each other (lanes 2, 3, and 4). All the three groups are Nav1.8 Knockouts, i.e. positive for the Cre band (249 bp) and negative for the wildtype Nav1.8 band (460 bp). Mice homozygous for the floxed Nav1.7 allele (461 vs. 317 bp band) are nociceptor-specific Nav1.7 knockout as well (lane 4). C57BL6 wildtype control is shown in lane 1 and no DNA negative control is in lane 5. Floxed Nav1.7 band Wildtype Nav1.7 band Wildtype Nav1.8 band Cre band All Nav1.8 KO C57BL6 Nav1.7 KO Negative control Nav1.7 hetero. Nav1.7 Wildtype Floxed Nav1.7 band Wildtype Nav1.7 band Wildtype Nav1.8 band Cre band All Nav1.8 KO C57BL6 Nav1.7 KO Negative control Nav1.7 hetero. Nav1.7 Wildtype revealed that more than 85% are nociceptors [8]. Cre band Peripheral nerve injury leads to lowered pain thresholds, enhanced responsiveness and/or ectopic activity in sen- sory neurons that ultimately leads to hyperalgesia and allodynia [5,6]. Changes in expression of α-subunits of VGSCs have been documented in models of peripheral nerve injury [5,6]. This has lead to the hypothesis that modulation of α-subunits in sensory neurons may under- lie the increased neuronal excitability of sensory neurons following peripheral nerve injury. Pharmacological block- ade of sodium channel activity has been shown to attenu- ate ectopic activity [14,15] and reverse hyperalgesia following nerve injury [16]. While the role of Nav1.7 in neuropathic pain remains to be investigated, analysis of a Nav1.8 knockout mouse indicated that it is not involved in alteration of pain threshold following peripheral nerve injury [17]. This is in contrast to the finding of Lai et al who reported that antisense oligonucleotides directed against Nav1.8 administered intrathecally completely reverse neuropathic pain behavior [18]. It is possible that this discrepancy could be due to the up-regulation of the Nav1.7 channel seen in the Nav1.8 knockout mouse [12] which might mask an otherwise important role for Nav1.8 in neuropathic pain. Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice Figure 1 Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice. PCR genotyping of mice gener- ated by breeding homozygous Nav1.8Cre/heterozygous floxed Nav1.7 mice with each other (lanes 2, 3, and 4). All the three groups are Nav1.8 Knockouts, i.e. positive for the Cre band (249 bp) and negative for the wildtype Nav1.8 band (460 bp). Mice homozygous for the floxed Nav1.7 allele (461 vs. 317 bp band) are nociceptor-specific Nav1.7 knockout as well (lane 4). C57BL6 wildtype control is shown in lane 1 and no DNA negative control is in lane 5. Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice Figure 1 Generation and genotyping of Nav1.7 and Nav1.8 double knockout mice. PCR genotyping of mice gener- ated by breeding homozygous Nav1.8Cre/heterozygous floxed Nav1.7 mice with each other (lanes 2, 3, and 4). All the three groups are Nav1.8 Knockouts, i.e. positive for the Cre band (249 bp) and negative for the wildtype Nav1.8 band (460 bp). Mice homozygous for the floxed Nav1.7 allele (461 vs. 317 bp band) are nociceptor-specific Nav1.7 knockout as well (lane 4). C57BL6 wildtype control is shown in lane 1 and no DNA negative control is in lane 5. lethal at P0 [13]. Cre band Therefore, we generated Nav1.7 and Nav1.8 double-knockout (DKO) mice by exploiting the fact that the Nav1.8Cre allele has Cre sequence inserted in exon 1 followed by transcriptional stop signals [19]. Con- sequently homozygous Nav1.8Cre mice are Nav1.8 global- knockouts (Nav18 KO) and show no Nav1.8 currents in sensory neurons [19]. lethal at P0 [13]. Therefore, we generated Nav1.7 and Nav1.8 double-knockout (DKO) mice by exploiting the fact that the Nav1.8Cre allele has Cre sequence inserted in exon 1 followed by transcriptional stop signals [19]. Con- sequently homozygous Nav1.8Cre mice are Nav1.8 global- knockouts (Nav18 KO) and show no Nav1.8 currents in sensory neurons [19]. We compared the DKO strain to the Nav1.8 KO (homozygous Nav1.8Cre). To obtain the desired strains we mated mice homozygous for the Nav1.8Cre/hetero- zygous for floxed Nav1.7 allele with each other. The result- ing progeny are all Nav1.8 Knockout. However, 25% will have wildtype Nav1.7 alleles, 50% will be heterozygous for the floxed Nav1.7 allele and 25% will be homozygous for the floxed Nav1.7 allele (i.e. DKO) figure 1. In the present study we investigated the role of the Nav1.7 channel in neuropathic pain using nociceptor-specific deletion of Nav1.7 in mouse. In addition, we readdressed the role of Nav1.8 in neuropathic pain by generating a double knockout of Nav1.8 and Nav1.7. We reasoned that the co-deletion of Nav1.7 in Nav1.8-expressing neurons should reveal any potential role for Nav1.8 in neuropathic pain. Eight weeks old C57BL6 inbred mice were used as wildtype (WT) control (wildtype Nav1.8 and Nav1.7) because it would be impractical and undesirable to gener- ate them as littermates to the test groups (DKO and Nav1.8 KO). The expected ratio of each of desired strains would be only 6.25% if the parents were heterozygous for both Nav1.8Cre and floxed Nav1.7 alleles compared with Page 2 of 9 (page number not for citation purposes) Background Nav1.7 is expressed principally in peripheral neurons with very weak expression detected in CNS [10,11]. As there are no subunit specific blockers, gene knockouts in mice have provided insights into the role of individual α-subunits genes in pain [5]. Deletion of the Nav1.8 gene [12] and nociceptor-specific knockout of the Nav1.7 [13] gene have identified a role for these two α-subunits in setting mechanical and, to a lesser extent, thermal pain thresh- olds. In addition, behavioral studies have revealed deficits in inflammatory pain models, most dramatically in the nociceptor-specific Nav1.7 knockout [12,13]. These find- ings suggest that these α-subunits could be targets for new anti-inflammatory drugs. Generation of Nav1.7 and Nav1.8 double knockouts in nociceptors groups, figure 2b (WT 145.6 ± 13.12 sec, n = 4; Nav1.8 KO 146.4 ± 11.37, n = 7 and DKO 108.6 ± 11.5, n = 7). 25% as in our breeding strategy. The Nav1.8 KO/Nav1.7 heterozygous group was analysed in behavioural tests and was found to be similar to the Nav1.8 KO group (data not shown). Acute pain thresholds We measured thermal pain thresholds using the hotplate and Hargreave's tests. In the hotplate test, which involves supraspinal activity, the response latency was not different between the three mouse groups (WT 36.1 ± 6.5 sec, n = 7; Nav1.8 KO 29.0 ± 5.6, n = 7 and DKO 32.7 ± 6.35, n = 7), figure 3a. However, the response latency in the Har- greave's test was doubled in DKO group (15.30 ± 0.91 sec, n = 7) compared to both WT (6.88 ± 0.28, n = 11) and Nav1.8 KO (8.47 ± 0.78, n = 7) groups, figure 3b. The latency in the Nav1.8 KO was higher that that of the WT group which is in agreement with the finding of Akopian Generation of Nav1.7 and Nav1.8 double knockouts in nociceptors Generation of Nav1.7 and Nav1.8 double knockouts in nociceptors Nociceptor-specific Nav1.7 knockout mice and their litter- mate controls were generated as described previously [13]. It is not possible to generate global knockouts of both Nav1.8 and Nav1.7 since global deletion of Nav1.7 is Page 2 of 9 (page number not for citation purposes) Page 2 of 9 (page number not for citation purposes) Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 B A Development and motor coordination Figure 2 Development and motor coordination. A) Males and females mice have similar weights among the three groups being compared. In males the P value for WT vs. Nav1.8 KO is 0.09, for WT vs. DKO is 0.89 and for Nav1.8 KO vs. DKO is 0.08. In females the P value for WT vs. Nav1.8 KO is 0.27, for WT vs. DKO is 0.71 and for Nav1.8 KO vs. DKO is 0.27. B) Perform- ance on the rotarod apparatus is not significantly different between the three mice groups. The P value for WT vs. Nav1.8 KO is 0.98, for WT vs. DKO is 0.38 and for Nav1.8 KO vs. DKO is 0.39. P values were calculated using two-tailed T-test. WT in white, Nav1.8 KO in grey and DKO in black. 0 10 20 30 40 Males Females Weight (grams) 0 40 80 120 160 200 Time (seconds) 0 10 20 30 40 Males Females Weight (grams) 0 40 80 120 160 200 Time (seconds) Developme Figure 2 Development and motor coordination Figure 2 Development and motor coordination. A) Males and females mice have similar weights among the three groups being compared. In males the P value for WT vs. Nav1.8 KO is 0.09, for WT vs. DKO is 0.89 and for Nav1.8 KO vs. DKO is 0.08. In females the P value for WT vs. Nav1.8 KO is 0.27, for WT vs. DKO is 0.71 and for Nav1.8 KO vs. DKO is 0.27. B) Perform- ance on the rotarod apparatus is not significantly different between the three mice groups. The P value for WT vs. Nav1.8 KO is 0.98, for WT vs. DKO is 0.38 and for Nav1.8 KO vs. DKO is 0.39. P values were calculated using two-tailed T-test. WT in white, Nav1.8 KO in grey and DKO in black. Development and motor coordination The weight of male (WT 26.72 ± 1.60 gram, n = 6; Nav1.8 KO 23.44 ± 0.76, n = 9 and DKO 27.05 ± 1.63, n = 9) and female (WT 20.50 ± 1.77 gram, n = 3; Nav1.8 KO 21.43 ± 0.95, n= 3 and DKO 19.66 ± 1.03, n = 4) mice in each group was very similar and was not significantly different, figure 2a. Motor coordination as tested through perform- ance on the rotarod apparatus was unchanged between the mouse groups studied. The time spent on the rotarod was not significantly different between the three mouse Page 3 of 9 (page number not for citation purposes) Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 Acute pain thresholds are increased in the DKO mice Figure 3 Acute pain thresholds are increased in the DKO mice. A) Latency to respond in the hotplate test was not different between all groups. The P value for WT vs. Nav1.8 KO is 0.67, for WT vs. DKO is 0.72 and for Nav1.8 KO vs. DKO is 0.43 B) Latency to paw withdrawal in the Hargreave's test was doubled in the DKO mice. The P value for WT vs. Nav1.8 KO is 0.08, for WT vs. DKO is <0.0001 and for Nav1.8 KO vs. DKO is <0.0001. C) The 50% withdrawal threshold to stimulation with von Frey hairs was not different between all groups. The P value for WT vs. Nav1.8 KO is 0.21, for WT vs. DKO is 0.2 and for Nav1.8 KO vs. DKO is 0.84. D) The Nav1.8 KO and DKO mice showed profound analgesia to noxious mechanical pressure applied to the tail using the Randall-Selitto apparatus. The P value for WT vs. Nav1.8 KO is <0.0001, for WT vs. DK is <0.0001 and for Nav1.8 KO vs. DKO is 0.67. P values were calculated using two-tailed T-test. WT in white, Nav1.8 KO in grey and DKO in black. Page 4 of 9 (page number not for citation purposes) Development and motor coordination A B C D 0 10 20 30 40 50 Latency (seconds) 0 4 8 12 16 20 0.0 0.2 0.4 0.6 0.8 50% Threshold (gram) 0 100 200 300 400 500 Weight Applied (grams) Latency (seconds) A B 0 10 20 30 40 50 Latency (seconds) 0 4 8 12 16 20 Latency (seconds) A B C D 0.0 0.2 0.4 0.6 0.8 50% Threshold (gram) 0 100 200 300 400 500 Weight Applied (grams) D Acute pain thresholds are increased in the DKO mice Figure 3 Acute pain thresholds are increased in the DKO mice. A) Latency to respond in the hotplate test was not different between all groups. The P value for WT vs. Nav1.8 KO is 0.67, for WT vs. DKO is 0.72 and for Nav1.8 KO vs. DKO is 0.43. B) Latency to paw withdrawal in the Hargreave's test was doubled in the DKO mice. The P value for WT vs. Nav1.8 KO is 0.08, for WT vs. DKO is <0.0001 and for Nav1.8 KO vs. DKO is <0.0001. C) The 50% withdrawal threshold to stimulation with von Frey hairs was not different between all groups. The P value for WT vs. Nav1.8 KO is 0.21, for WT vs. DKO is 0.25 and for Nav1.8 KO vs. DKO is 0.84. D) The Nav1.8 KO and DKO mice showed profound analgesia to noxious mechanical pressure applied to the tail using the Randall-Selitto apparatus. The P value for WT vs. Nav1.8 KO is <0.0001, for WT vs. DKO is <0.0001 and for Nav1.8 KO vs. DKO is 0.67. P values were calculated using two-tailed T-test. WT in white, Nav1.8 KO in grey and DKO in black. Page 4 of 9 (page number not for citation purposes) Page 4 of 9 (page number not for citation purposes) Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 Reduced pain behavior in formalin test in DKO Figure 4 Reduced pain behavior in formalin test in DKO. A) The pain response after injection of 5% formalin in hindpaw showed the typical biphasic course. B) The second phase of the formalin response was reduced to 30% in the DKO mice compared to WT and Nav1.8 KO mice. The P value for WT vs. Nav1.8 KO is 0.94, for WT vs. DKO is 0.001 and for Nav1.8 KO vs. DKO is 0.08. The first phase was not significantly different between all groups. Development and motor coordination The P value for WT vs. Nav1.8 KO is 0.60, for WT vs. DKO is 0.30 and for Nav1.8 KO vs. DKO is 0.96. P values were calculated using two-tailed T-test. WT in open circles, Nav1.8 KO in grey triangles and DKO in black squares. A B 0 20 40 60 80 100 120 140 5 10 15 20 25 30 35 40 45 50 55 60 Time (seconds) Time post injection (minutes) 0 100 200 300 400 500 Phase 1 Phase 2 B A A B 0 20 40 60 80 100 120 140 5 10 15 20 25 30 35 40 45 50 55 60 Time (seconds) 0 100 200 300 400 500 Phase 1 Phase 2 Time (seconds) Time post injection (minutes) Reduced p Figure 4 Reduced pain behavior in formalin test in DKO Figure 4 Reduced pain behavior in formalin test in DKO. A) The pain response after injection of 5% formalin in hindpaw showed the typical biphasic course. B) The second phase of the formalin response was reduced to 30% in the DKO mice compared to WT and Nav1.8 KO mice. The P value for WT vs. Nav1.8 KO is 0.94, for WT vs. DKO is 0.001 and for Nav1.8 KO vs. DKO is 0.08. The first phase was not significantly different between all groups. The P value for WT vs. Nav1.8 KO is 0.60, for WT vs. DKO is 0.30 and for Nav1.8 KO vs. DKO is 0.96. P values were calculated using two-tailed T-test. WT in open circles, Nav1.8 KO in grey triangles and DKO in black squares. Reduced pain behavior in formalin test in DKO. A) The pain response after injection of 5% formalin in hindpaw showed the typical biphasic course. B) The second phase of the formalin response was reduced to 30% in the DKO mice compared to WT and Nav1.8 KO mice. The P value for WT vs. Nav1.8 KO is 0.94, for WT vs. DKO is 0.001 and for Nav1.8 KO vs. DKO is 0.08. The first phase was not significantly different between all groups. The P value for WT vs. Nav1.8 KO is 0.60, for WT vs. DKO is 0.30 and for Nav1.8 KO vs. DKO is 0.96. P values were calculated using two-tailed T-test. WT in open circles, Nav1.8 KO in grey triangles and DKO in black squares. et al using the conventional Nav1.8 global knockout [12]. Development and motor coordination The nociceptor-specific Nav1.7 knockout alone shows a 40% increase in latency in the Hargreave's test [13] Nav1.8 and the DKO mice in this test, figure 3d, and sim- ilar results have been obtained with the nociceptor-spe- cific Nav1.7 knockout [13] Nav1.8 and the DKO mice in this test, figure 3d, and sim- ilar results have been obtained with the nociceptor-spe- cific Nav1.7 knockout [13] Pain thresholds to punctate mechanical stimulation was measured using calibrated von Frey hairs according to the up and down method [20]. The 50% withdrawal thresh- old was not different between the three groups (WT 0.56 ± 0.07 gram, n = 11; Nav1.8 KO 0.45 ± 0.05, n = 13 and DKO 0.49 ± 0.06, n = 17), figure 3c. In contrast pain threshold to noxious mechanical pressure applied to the tail using the Randall-Selitto apparatus was much higher in both the Nav1.8 KO (412.4 ± 33.97 gram, n = 7) and DKO (395.7 ± 21.03, n = 7) groups compared to that of the WT (131.4 ± 16.54, n = 6) group, figure 3d. Usually the cut off point (500 gram) was reached without an observed escape response in the Nav1.8 KO and DKO groups, indicating a high resistance to static blunt mechanical pressure. There was no difference between the Inflammatory pain behaviour (B) WT (open circles), Nav1.8 KO (grey triangles) and DKO (black squares) developed profound h i l ll d i f li i f i l L5 B 0 5 10 15 20 25 Test/baseline Time post surgery (days) 0 0.2 0.4 0.6 0.8 1 1.2 5 10 15 20 25 30 B Test/baseline 0 0.2 0.4 0.6 0.8 1 1.2 5 10 15 20 25 30 B 10 30 Analysis o Figure 5 y p p p p g Analysis of neuropathic pain in nociceptor-specific Nav1.7 knockout mice and double knockout mice. (A) Both control (white circles, mean 0.56 ± 0.9, n = 8) and nociceptor-specific Nav1.7 KO (black squares, 0.48 ± 0.8, n = 11) developed robust mechanical allodynia after ligation of spinal nerve L5. There is no difference in the extent of pain behavior at any time point (P = 0.49 ANOVA). (B) WT (open circles), Nav1.8 KO (grey triangles) and DKO (black squares) developed profound mechanical allodynia after ligation of spinal nerve L5. commonly used inflammatory pain models [13]. It would be impossible therefore to measure a further reduction in inflammatory pain behaviour in the DKO. spinal nerve) in the Nav1.7 nociceptor-specific knockout and homozygous floxed-Nav1.7 as controls. Both groups developed a robust mechanical allodynia starting form the third day post surgery, figure 5a. The extent and time course of development of increased mechanosensitivity was identical in both nociceptor-specific Nav1.7 knock- out and their littermate controls. Inflammatory pain behaviour The pain response elicited by injection of 20µl of 5% for- malin intradermally in the hindpaw showed the typical biphasic response in the three groups, figure 4a. The first phase (1–10 minutes) was not different between the three groups (WT 107.8 ± 10.12 sec n = 8, Nav1.8 KO 155 ± 11.00 n = 4, DKO 120.4 ± 5.96 n = 8), figure 4b. In con- trast, the second phase (10–60 minutes) was much reduced in the DKO group (105.4 ± 28.43 sec) compared to both the Nav1.8 KO (309 ± 80.85, P = 0.08) and the WT (216 ± 43.67, P = 0.0016) groups, figure 4b. This effect was even more dramatic than that observed in the nocice- ptor specific Nav1.7 knockout [13] We did not study other inflammatory pain models since the nociceptor-specific Nav1.7 knockout mouse is completely deficient in Page 5 of 9 (page number not for citation purposes) http://www.molecularpain.com/content/1/1/24 Molecular Pain 2005, 1:24 Analysis of neuropathic pain in nociceptor-specific Nav1.7 knockout mice and double knockout mice Figure 5 Analysis of neuropathic pain in nociceptor-specific Nav1.7 knockout mice and double knockout mice. (A) Both control (white circles, mean 0.56 ± 0.9, n = 8) and nociceptor-specific Nav1.7 KO (black squares, 0.48 ± 0.8, n = 11) developed robust mechanical allodynia after ligation of spinal nerve L5. There is no difference in the extent of pain behavior at any time point (P = 0.49 ANOVA). (B) WT (open circles), Nav1.8 KO (grey triangles) and DKO (black squares) developed profound mechanical allodynia after ligation of spinal nerve L5. A B 0 0.2 0.4 0.6 0.8 1 1.2 0 5 10 15 20 25 Test/baseline Test/baseline Time post surgery (days) 0 0.2 0.4 0.6 0.8 1 1.2 5 10 15 20 25 30 A 0 0.2 0.4 0.6 0.8 1 1.2 0 5 10 15 20 25 Test/baseline A Analysis of neuropathic pain in nociceptor-specific Nav1.7 knockout mice and double knockout mice Figure 5 Analysis of neuropathic pain in nociceptor-specific Nav1.7 knockout mice and double knockout mice. (A) Both control (white circles, mean 0.56 ± 0.9, n = 8) and nociceptor-specific Nav1.7 KO (black squares, 0.48 ± 0.8, n = 11) developed robust mechanical allodynia after ligation of spinal nerve L5. There is no difference in the extent of pain behavior at any time point (P = 0.49 ANOVA). Neuropathic pain We investigated the role of Nav1.7 expressed in nocicep- tors in neuropathic pain. Analysis of neuropathic pain in the nociceptor-specific Nav1.7 knockout using the Chung model showed that they developed mechanical allodynia to the same extent as the littermate control mice (homozygous floxed Nav1.7), figure 5. This clearly shows that unlike its critical role in inflammatory pain [13], Nav1.7 does not contribute to neuropathic pain. In addition, the Nav1.8 knockout and WT as well as the DKO mice developed a profound mechanical allodynia the level of which was indistinguishable between the three groups. This provides further evidence that Nav1.8 does not contribute to mechanical allodynia as reported by Kerr et al [17]. In addition our results rule out Nav1.7 up- regulation in the Nav1.8 knockout as the reason behind the discrepancy between the finding of Kerr et al [17] and Lai et al [18]. Surprisingly Lai et al [18] failed to detect the changes in acute pain thresholds observed in the Nav1.8 KO both in this study and that of Akopian et al [12], which would be expected to occur if Nav1.8 had been down-regulated. Acute pain thresholds p analysis of acute mechanical thresholds in DKO mice con- firmed previous findings that the knockout of either Nav1.8 or Nav1.7 renders the mice resistant in the Randel- Selitto test of noxious mechanical pressure while the responses to von Frey hairs remain unchanged compared to controls [12,13]. Furthermore, it has been shown that both Nav1.8 and nociceptor-specific Nav1.7 knockouts have small increases of about 20–40% in their thermal threshold [12,13]. Interestingly, we found that the ther- mal threshold in the Hargreave's test was doubled in the DKO compared to Nav1.8 knockout or WT controls, figure 3b. The increase is more than the sum of the phenotype in the individual knockouts and may indicate that Nav1.8 and Nav1.7 are the major VGSC isoforms present in noci- ceptive terminals and their deletion dramatically increases pain threshold. This is supported by the fact that Nav1.7 is transported to nerve terminals of sensory neurons [10] and that Nav1.8 currents are localized in the terminals [23]. http://www.molecularpain.com/content/1/1/24 Molecular Pain 2005, 1:24 only investigated the pain response in the formalin model. While the nociceptive-specific Nav1.7 knockout showed a reduction in the second phase to about 50% of controls [13] the DKO showed a slightly bigger reduction to 30% of controls, figure 4b. This is in contrast to Nav1.8 mice that showed no reduction in the second phase com- pared to controls, figure 4b. Therefore, the reduction in the second phase in the DKO is a new phenotype rather than a mere summation of the phenotype in the individ- ual knockouts. This highlights further the predominant role for Nav1.7 in inflammatory pain. Expression of Nav1.7 has been reported to increase in sensory neurons subsequent to induction of inflammation [24]. Neuropathic pain in Nav1.7 Nav1.8 double knockout mice To address the issue of compensatory up-regulation of Nav1.7 in Nav1.8 knockout we induced peripheral nerve injury in WT, Nav1.8 KO and DKO. All mice groups studied developed a robust mechanical allodynia starting form the third day post surgery, figure 5b. There were no statistically meaningful differences in the behaviour of the groups of mice. Discussion This study confirms that the two sodium channel α- sub- units Nav1.7 and Nav1.8, expressed selectively in nocicep- tive sensory neurons, have important roles in nociception and in pain. In the absence of specific pharmacological blockers, the use of genetic approaches, a combination of global and nociceptor-specific knockouts, has enabled us to carry out studies exploring the contribution of these two isoforms of VGSCs in different pain conditions. Nav1.8 knockouts are already known to have deficits in inflammatory and visceral but not neuropathic pain [12]. Nav1.7 nociceptor-specific knockouts are almost totally refractory to changes in peripheral pain thresholds evoked by inflammatory mediator [13]. This mirrors the inflam- matory phenotype of Nav1.7 gain-of-function mutations in erythermalgia [21]. This heritable disorder is caused by point mutations that lead to altered thresholds of activa- tion in Nav1.7 [22] This study and our previous [13] work have explored the role of Nav1.7 in Nav1.8-expressing neurons, since our strategy exploits the Nav1.8 promoter to drive Cre expres- sion. We have shown previously using non-quantitative RT-PCR that not all the Nav1.7 mRNA in DRGs from the nociceptor-specific Nav1.7 knockout is deleted [13]. This indicates that there is a population of sensory neurons, the size of which has yet to be determined, that express Nav1.7 but not Nav1.8. Therefore, the role of Nav1.7 in sensory neurons where Nav1.8 is not expressed (and which do not express Cre) remains to be studied. From all the above, our results indicate that Nav1.8 and Nav1.7 subunits contribute to the excitability of periph- eral nerve terminals and their modulation is critical for peripheral sensitisation in inflammatory pain Neuropathic pain in nociceptor-specific Nav1.7 knockout mice To study neuropathic pain behavior we induced periph- eral nerve injury using to the Chung model (ligation of L5 Page 6 of 9 (page number not for citation purposes) Page 6 of 9 (page number not for citation purposes) http://www.molecularpain.com/content/1/1/24 Page 7 of 9 (page number not for citation purposes) Genotyping of mice strains g 5. Wood JN, Abrahamsen B, Baker MD, Boorman JD, Donier E, Drew LJ, Nassar MA, Okuse K, Seereeram A, Stirling CL, Zhao J: Ion chan- nel activities implicated in pathological pain. Novartis Found Symp 2004, 261:32-40. discussion 40–54 Nav1.8Cre and floxed Nav1.7 lines were produced as described [13]. Both strains were back-crossed at last 5 times onto a C57/BL6 background. y p 6. Lai J, Porreca F, Hunter JC, Gold MS: Voltage-gated sodium chan- nels and hyperalgesia. Annu Rev Pharmacol Toxicol 2004, 44:371-397. Genomic DNA was prepared from tail biopsies and geno- typed using PCR. Primers for Nav1.7 are (CAGAGATTTCT- GCATTAGAATTTGTTC) and (AGTCTTTGTGGCACACGTTACCTC) which give a WT band of 317 bp and a floxed band of 461 bp. Primers for Nav1.8 are (TGTAGATGGACTGCAGAGGATGGA) and (ttacccggtgtgtgctgtagaaag) which give a WT band of 460 bp. Nav1.8Cre was detected by primers (aaatttgcctgcattac- cggtcga) and (aaatgttgctggatagtttttactgcc) located inside Cre sequence which give a band of 249 bp. Genomic DNA was prepared from tail biopsies and geno- typed using PCR. Primers for Nav1.7 are (CAGAGATTTCT- GCATTAGAATTTGTTC) and 7. Djouhri L, Newton R, Levinson SR, Berry CM, Carruthers B, Lawson SN: Sensory and electrophysiological properties of guinea- pig sensory neurones expressing Nav 1.7 (PN1) Na+ channel alpha subunit protein. J Physiol 2003, 546:565-576. (AGTCTTTGTGGCACACGTTACCTC) which give a WT band of 317 bp and a floxed band of 461 bp. Primers for Nav1.8 are (TGTAGATGGACTGCAGAGGATGGA) and (ttacccggtgtgtgctgtagaaag) which give a WT band of 460 bp. Nav1.8Cre was detected by primers (aaatttgcctgcattac- cggtcga) and (aaatgttgctggatagtttttactgcc) located inside Cre sequence which give a band of 249 bp. 8. Djouhri L, Fang X, Okuse K, Wood JN, Berry CM, Lawson SN: The TTX-resistant sodium channel Nav1.8 (SNS/PN3): expres- sion and correlation with membrane properties in rat nocic- eptive primary afferent neurons. J Physiol 2003, 550:739-752. p p y J y 9. Akopian AN, Sivilotti L, Wood JN: A tetrodotoxin-resistant volt- age-gated sodium channel expressed by sensory neurons. Nature 1996, 379:257-262. 10. Toledo-Aral JJ, Moss BL, He ZJ, Koszowski AG, Whisenand T, Levin- son SR, Wolf JJ, Silos-Santiago I, Halegoua S, Mandel G: Identifica- tion of PN1, a predominant voltage-dependent sodium channel expressed principally in peripheral neurons. Proc Natl Acad Sci U S A 1997, 94:1527-1532. Acknowledgements The authors would like to acknowledge Mark D Baker for critical reading of the manuscript and Elizabeth A Matthew for great help in establishing the Chung model. We also thank the Wellcome Trust, the MRC and the Lon- don Pain Consortium for funding this work. The authors would like to acknowledge Mark D Baker for critical reading of the manuscript and Elizabeth A Matthew for great help in establishing the Chung model. We also thank the Wellcome Trust, the MRC and the Lon- don Pain Consortium for funding this work. Competing interests p g The author(s) declare that they have no competing interests. References 2. Baker MD, Wood JN: Involvement of Na+ channels in pain pathways. Trends Pharmacol Sci 2001, 22:27-31. 3. Felts PA, Yokoyama S, Dib-Hajj S, Black JA, Waxman SG: Sodium channel alpha-subunit mRNAs I, II, III, NaG, Na6 and hNE (PN1): different expression patterns in developing rat nerv- ous system. Brain Res Mol Brain Res 1997, 45:71-82. y 4. Meisler MH, Kearney JA: Sodium channel mutations in epilepsy and other neurological disorders. The Journal of Clinical Investigation 2005, 115:2010-2017. Inflammatory pain We have not studied pain behavior in inflammatory mod- els where the nociceptive-specific Nav1.7 knockout has shown complete deficits in inflammatory pain behavior [13], because it would not be possible to observe further changes brought about by the co-deletion of Nav1.8. We Page 7 of 9 (page number not for citation purposes) Page 7 of 9 (page number not for citation purposes) Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 The lack of changes in mechanical allodynia in any indi- vidual or even in double knockouts of Nav1.8 and Nav1.7 subunits is consistent with recent data by Flake et al. They reported that changes in sodium currents shortly after nerve injury do not correlate with an increase in neuronal excitability and that the sum of changes to ionic currents, and not a single class of voltage-gated ion channel, under- lie increased neuronal excitability [25]. This does not, however, exclude a potential role for both Nav1.7 and Nav1.8 in spontaneous neuropathic pain as suggested by the finding that neuromas in the Nav1.8 knockout mouse display less ectopic discharges than wildtype littermates [26]. These studies confirm the importance of Nav1.7 and Nav1.8 in the physiological processes that underlie altered peripheral thresholds in inflammatory pain. Neuropathic pain that arises as a consequence of nerve damage and neuronal dysfunction is, however, not dependent on the presence of these two sodium channels. In terms of the contribution of other α-subunits to neuropathic pain, a strong correlation has been found between the expression of Nav1.3 and the appearance of neuropathic pain. GDNF that reverses neuropathic pain behaviour also normalises Nav1.3 expression [27], and recent antisense studies have supported the view that increased Nav1.3 expression con- tributes to neuropathic pain development [28] formed in a Home Office designated room at 22 ± 2°C. Experiments were performed on animals of at least 8 weeks of age. Behavioral tests were done as before [19] LCS Analysed the Nav1.8Cre mouse. LCS Analysed the Nav1.8Cre mouse. JNW: supervised experiments and corrected the manuscript. References References 1. Isom LL: Sodium channel beta subunits: anything but auxiliary. Neuroscientist 2001, 7:42-54. 2. Baker MD, Wood JN: Involvement of Na+ channels in pain pathways. Trends Pharmacol Sci 2001, 22:27-31. 3. Felts PA, Yokoyama S, Dib-Hajj S, Black JA, Waxman SG: Sodium channel alpha-subunit mRNAs I, II, III, NaG, Na6 and hNE (PN1): different expression patterns in developing rat nerv- ous system. Brain Res Mol Brain Res 1997, 45:71-82. 4. Meisler MH, Kearney JA: Sodium channel mutations in epilepsy and other neurological disorders. The Journal of Clinical Investigation 2005, 115:2010-2017. 5. Wood JN, Abrahamsen B, Baker MD, Boorman JD, Donier E, Drew LJ, Nassar MA, Okuse K, Seereeram A, Stirling CL, Zhao J: Ion chan- nel activities implicated in pathological pain. Novartis Found Symp 2004, 261:32-40. discussion 40–54 6. Lai J, Porreca F, Hunter JC, Gold MS: Voltage-gated sodium chan- nels and hyperalgesia. Annu Rev Pharmacol Toxicol 2004, 44:371-397. 7. Djouhri L, Newton R, Levinson SR, Berry CM, Carruthers B, Lawson SN: Sensory and electrophysiological properties of guinea- pig sensory neurones expressing Nav 1.7 (PN1) Na+ channel alpha subunit protein. J Physiol 2003, 546:565-576. 8. Djouhri L, Fang X, Okuse K, Wood JN, Berry CM, Lawson SN: The TTX-resistant sodium channel Nav1.8 (SNS/PN3): expres- sion and correlation with membrane properties in rat nocic- eptive primary afferent neurons. J Physiol 2003, 550:739-752. 9. Akopian AN, Sivilotti L, Wood JN: A tetrodotoxin-resistant volt- age-gated sodium channel expressed by sensory neurons. Nature 1996, 379:257-262. 10. Toledo-Aral JJ, Moss BL, He ZJ, Koszowski AG, Whisenand T, Levin- son SR, Wolf JJ, Silos-Santiago I, Halegoua S, Mandel G: Identifica- tion of PN1, a predominant voltage-dependent sodium channel expressed principally in peripheral neurons. Proc Natl Acad Sci U S A 1997, 94:1527-1532. 11. Sangameswaran L, Fish LM, Koch BD, Rabert DK, Delgado SG, Ilnicka M, Jakeman LB, Novakovic S, Wong K, Sze P, Tzoumaka E, Stewart GR, Herman RC, Chan H, Eglen RM, Hunter JC: A novel tetrodo- e e e ces 1. Isom LL: Sodium channel beta subunits: anything but auxiliary. Neuroscientist 2001, 7:42-54. 2. Baker MD, Wood JN: Involvement of Na+ channels in pain pathways. Trends Pharmacol Sci 2001, 22:27-31. 1. Isom LL: Sodium channel beta subunits: anything but auxiliary. Neuroscientist 2001, 7:42-54. 1. Isom LL: Sodium channel beta subunits: anything but auxiliary. Neuroscientist 2001, 7:42-54. 2. Baker MD, Wood JN: Involvement of Na+ channels in pain pathways. Trends Pharmacol Sci 2001, 22:27-31. Conclusion In summary, our results indicate a critical role for Nav1.7 and Nav1.8 in setting pain thresholds of nociceptive nerve terminals and in their sensitisation following tissue dam- age and inflammation. However, the presence of these channels, or changes to their expression and function are not required for the establishment of mechanical allody- nia arising from nerve injury. Authors' contributions MAN generated the mice, performed behavioral tests and wrote the manuscript. MAN generated the mice, performed behavioral tests and wrote the manuscript. AL carried out the neuropathic pain study of the DKO and Nav1.8 KO. Behavioural analysis All tests were approved by the United Kingdom Home Office Animals (Scientific Procedures) Act 1986 and per- 11. Sangameswaran L, Fish LM, Koch BD, Rabert DK, Delgado SG, Ilnicka M, Jakeman LB, Novakovic S, Wong K, Sze P, Tzoumaka E, Stewart GR, Herman RC, Chan H, Eglen RM, Hunter JC: A novel tetrodo- Page 8 of 9 (page number not for citation purposes) Page 8 of 9 (page number not for citation purposes) Page 8 of 9 Molecular Pain 2005, 1:24 http://www.molecularpain.com/content/1/1/24 http://www.molecularpain.com/content/1/1/24 toxin-sensitive, voltage-gated sodium channel expressed in rat and human dorsal root ganglia. J Biol Chem 1997, 272:14805-14809. 12. Akopian AN, Souslova V, England S, Okuse K, Ogata N, Ure J, Smith A, Kerr BJ, McMahon SB, Boyce S, Hill R, Stanfa LC, Dickenson AH, Wood JN: The tetrodotoxin-resistant sodium channel SNS has a specialized function in pain pathways. Nat Neurosci 1999, 2:541-548. 13. Nassar MA, Stirling LC, Forlani G, Baker MD, Matthews EA, Dicken- son AH, Wood JN: Nociceptor-specific gene deletion reveals a major role for Nav1.7 (PN1) in acute and inflammatory pain. Proc Natl Acad Sci U S A 2004, 101:12706-12711. 14. Devor M, Wall PD, Catalan N: Systemic lidocaine silences ectopic neuroma and DRG discharge without blocking nerve conduction. Pain 1992, 48:261-268. 15. Omana-Zapata I, Khabbaz MA, Hunter JC, Clarke DE, Bley KR: Tet- rodotoxin inhibits neuropathic ectopic activity in neuromas, dorsal root ganglia and dorsal horn neurons. Pain 1997, 72:41-49. 16. Chabal C, Jacobson L, Little J: Intrathecal fentanyl depresses nociceptive flexion reflexes in patients with chronic pain. Anesthesiology 1989, 70:226-229. gy 17. Kerr BJ, Souslova V, McMahon SB, Wood JN: A role for the TTX- resistant sodium channel Nav 1.8 in NGF-induced hyperalge- sia, but not neuropathic pain. Neuroreport 2001, 12:3077-3080. 18. Lai J, Gold MS, Kim CS, Bian D, Ossipov MH, Hunter JC, Porreca F: Inhibition of neuropathic pain by decreased expression of the tetrodotoxin-resistant sodium channel, NaV1.8. Pain 2002, 95:143-152. 19. Stirling LC, Forlani G, Baker MD, Wood JN, Matthews EA, Dickenson AH, Nassar MA: Nociceptor-specific gene deletion using het- erozygous NaV1.8-Cre recombinase mice. Pain 2005, 113:27-36. 20. Chaplan SR, Bach FW, Pogrel JW, Chung JM, Yaksh TL: Quantita- tive assessment of tactile allodynia in the rat paw. J Neurosci Methods 1994, 53:55-63. 21. Yang Y, Wang Y, Li S, Xu Z, Li H, Ma L, Fan J, Bu D, Liu B, Fan Z, Wu G, Jin J, Ding B, Zhu X, Shen Y: Mutations in SCN9A, encoding a sodium channel alpha subunit, in patients with primary erythermalgia. J Med Genet 2004, 41:171-174. y g J 22. Dib-Hajj SD, Rush AM, Cummins TR, Hisama FM, Novella S, Tyrrell L, Marshall L, Waxman SG: Gain-of-function mutation in Nav1.7 in familial erythromelalgia induces bursting of sensory neurons. Brain 2005, 128:1847-1854. 23. Brock JA, McLachlan EM, Belmonte C: Tetrodotoxin-resistant impulses in single nociceptor nerve terminals in guinea-pig cornea. Page 8 of 9 J Physiol 1998, 512(Pt 1):211-217. J y ( ) 24. Gould HJ 3rd, England JD, Soignier RD, Nolan P, Minor LD, Liu ZP, Levinson SR, Paul D: Ibuprofen blocks changes in Nav1.7 and 1.8 sodium channels associated with complete Freund's adju- vant-induced inflammation in rat. J Pain 2004, 5:270-280. 25. Flake NM, Lancaster E, Weinreich D, Gold MS: Absence of an asso- ciation between axotomy-induced changes in sodium cur- rents and excitability in DRG neurons from the adult rat. Pain 2004, 109:471-480. 26. Roza C, Laird JM, Souslova V, Wood JN, Cervero F: The tetrodo- toxin-resistant Na+ channel Nav1.8 is essential for the expression of spontaneous activity in damaged sensory axons of mice. J Physiol 2003, 550:921-926. J y 27. Boucher TJ, Okuse K, Bennett DL, Munson JB, Wood JN, McMahon SB: Potent analgesic effects of GDNF in neuropathic pain states. Science 2000, 290:124-127. Publish with BioMed Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biomedical research in our lifetime." Sir Paul Nurse, Cancer Research UK Your research papers will be: available free of charge to the entire biomedical community peer reviewed and published immediately upon acceptance cited in PubMed and archived on PubMed Central yours — you keep the copyright Submit your manuscript here: http://www.biomedcentral.com/info/publishing_adv.asp BioMedcentral Page 9 of 9 (page number not for citation purposes) Publish with BioMed Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biomedical research in our lifetime." Sir Paul Nurse, Cancer Research UK Your research papers will be: available free of charge to the entire biomedical community peer reviewed and published immediately upon acceptance cited in PubMed and archived on PubMed Central yours — you keep the copyright Submit your manuscript here: http://www.biomedcentral.com/info/publishing_adv.asp BioMedcentral Publish with BioMed Central and every scientist can read your work free of charge 28. Hains BC, Klein JP, Saab CY, Craner MJ, Black JA, Waxman SG: Upregulation of sodium channel Nav1.3 and functional involvement in neuronal hyperexcitability associated with central neuropathic pain after spinal cord injury. J Neurosci 2003, 23:8881-8892.
https://openalex.org/W4289802489
https://zenodo.org/records/6303523/files/101-103.pdf
English
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Some Studies towards Preparation of N-Acyl-O-alkylhydroxylamines and O-Acylhydroxamic Acids
Zenodo (CERN European Organization for Nuclear Research)
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J. iadlao Cbem. Soe., - Vol. 66, February 1989, pp. 101-103 J. iadlao Cbem. Soe., - Vol. 66, February 1989, pp. 101-103 Some Studies towards Preparation of N-Acyl-0-alkylhydroxylamines and 0-Acylhydroxamic Acids A. S. SINOHA * Chemistry Department, Regional Engineering College, Hamirpur-177 001 and y p g g g g p and B. N. MISRA Chemistry Department, Himachal Pradesh University, Bhlmla.-171 005 and B. N. MISRA B. N. MISRA Chemistry Department, Himachal Pradesh University, Bhlmla.-171 005 B. N. MISRA Chemistry Department, Himachal Pradesh University, Bhlmla.-171 005 A number of N-acyl-0-alkylbydroxylamlnes (2) have lleeu prepared by alkylatlou of potassium salt of various hydroxamic acids (1) under dllfereut set of reaction con- ditions. Hydroxamie acids (3) obtained by acidic hydrolysis of potassium salt of bydrosamic acids were subjected to acylatioo with various acylatiog agents to give 0-acylbydrosamic acids {4). The structure assigumeuts of 2 aud 4 are based on elemental, lr and umr spectral data. The beauty of this method lies in the fact that no N-alkylated product was isolated. However, in certain cases the alkylation on carbonyl oxygen gave dialkylated product (5) 8 • The formation of dialkylated product can be explained by the fact that hydroxamic acids are known to exist as tauto- mer (3 and 3a). HYDROXAMIC acids (3) and their derivatives have recently attracted the attention of chemists because of their widespread uses1 •9 • However. their chemistry has not been fully explored. In the present communication, attempts have been made to prepare various monoalkyl derivatives {2) of hydroxamic acids by methods other than conven- tional methods used by various workers•-• which require quite a long time. The new method used in this context are (i) solid support synthesis method and (ii) phase transfer catalysis method. These two methods are less time-consuming and the reaction occurred at much lower temperatures. HY ) 0 H II I R-C-N-OH 3 OH I R-C-NOH 3a 3a can react easily with alkyl halide in the presence of KF- Al 90 8 support to give di·O· alkylated product in the following manner, p OH OH OH OH II I II I II I II I RC-NOH RC-NOK RC-NOR' RC-NOCOR" 3 1 ~ 4 - R-C=NOR" I + 2HF-t-2KX OR1 5 - R-C=NOR" I + 2HF-t-2KX OR1 5 Alkylation on solid support was achieved by using KF·alumina support in acetonitrile. Under phase transfer catalysis (PTC) conditions the alkylation of potassium salt of hydroxamic acid was achieved by using tetrabutylammonium iodide (TBAI) as phase transfer catalyst in the presence of water-chlorobenzene or water- dichloromethane phase system. Some Studies towards Preparation of N-Acyl-0-alkylhydroxylamines and 0-Acylhydroxamic Acids Since the yield on KF- alumina support was quite good hence no other support was used. When alkylation was studied on solid support, it was observed that both mono- and dialkyl derivatives were isolated. However, the reaction could be controlled to give preferentially mono- alkylated product by controlling the amount of alkyl halide used. Following mechanism has been proposed for the monoalkylati~n o~ hydrox~mic acids in line with the mechamsm g'lVen by Miller and coworkers4 for alkylation of phenols with alkyl halides. We have applied PTC technique in the synthesis of N-acyl-0-alkyl hydroxylamines since at present there is relatively very little information on alkyla- tion by PTC method, although this approach has been valuable in a variety of other nucleophilic reactions"~· 8 • Singha and Misra• partially used this technique. In the present communication some modifications have been made to get better yield of the products. Following possible mechanism can be written for alkylation of hydroxamic acid salt by PTC technique, 0 H tc•-R-l-~-OR1 + I<X+HF (2) QBr(ori)+RCONHOK-+RCONHOQcor11+KBrc•ql RCONHOQcorsl + R'X-+RCONHOR'(or.>+ QX QBr(ori)+RCONHOK-+RCONHOQcor11+KBrc•ql RCONHOQcorsl + R'X-+RCONHOR'(or.>+ QX 101 J. INDIAN CHBM. SOC., VOL. 66, PBBRUAII.Y 1989 Other N-acyl-0-alkylbydroxylamines prepared by this method are reported in Table 1. where, QBr represents the quaternary salt (tetra· butyl ammonium iodide) and R'X the alkylating agent. The remarkable ability of anion associated with quaternary cation in non-polar media to undergo displacement reaction is particularly important. where, QBr represents the quaternary salt (tetra· butyl ammonium iodide) and R'X the alkylating agent. The remarkable ability of anion associated with quaternary cation in non-polar media to undergo displacement reaction is particularly important. Other N-acyl-0-alkylbydroxylamines prepared by this method are reported in Table 1. N-Anisoy/-0-benzylhydroxylamine by PTC method: Potassium anisohydroxamate (0.3 g) and tetrabutylammonium iodide (0.3 g) were taken in water (10 ml) and benzyl bromide (0.6 ml) in cblorobenzene (15 ml) was then added to it. The reaction mixture was stirred at 70 -75" for 14 h. The reaction rate was studied by colour test with ferric chloride, indicating the completition of reaction. The organic layer was then separated from water and washed with water. It was then diluted with ether and dried over anhydrous sodium sulphate. Ether was removed at room temperature and then chlorobenzene was removed by vacuum distillation. The resulting solid was taken in ether and recrystallised from ether- petroleum ether, (70%), m.p. 112" (lit.• 114"). Experimental Sl. no. 1. ll. a. '· TABI.IC 1-PHYSICAI, DATA Oil N•ACYJ:,-0- AI,KYI,BYDROXYI,AMIN!UI (l) B' M.p. ·o o.a. OeH 10Ha 103-04. .1'-01-0eHe o.a.oH. 150-51 21-oH,O- OaH • o.a.oH. llla-U o.H. OH~oH ... OHa 68-4. %Yield(%) Method Msthod A" B" 55.0 60.0 66.0 68.0 65.0 '10.0 50 66.0 *A•Boll:l support msthod; B-PTO method. Melting points were determined in open capi- llaries and are uncorrected. The petroleum ether used throughout bad b.p. 60-80". The purity of compounds was checked by tic using different solvent mixtures. Ir spectra (KBr) were recorded on a Perkin-Elmer Infracord 337 spectrophoto- meter. and nmr spectra (CDC1 8 or CDCI 8 + TFA) on a FT-100 instrument using TMS as an internal standard. Solidt suppor syntheses of N-anisoyl-0-benzyl- hydroxylamtne: To potassium anisohydroxamate (1.0 g) were added benzyl bromide (1.2 ml) and KF-support ( 1. 5 g) in acetonitrile (25 ml). The mixture was stirred at room temperature for 10-12 h and the progress of reaction was moni· tored by the ferric chloride test. After 12 h the ferric chloride colour remained the-same. It was then filtered off and the filtrate was evaporated to give a solid product. The product was then treated with anhydrous ether. The insoluble portion was filtered off and the N-anisoyl-0-benzylhydroxyl- amine (65%) was obtained from this solution by precipitation with dry petroleum ether. The m.p. was found to be 114" which corresponds well with N-anisoyl·O·benzylhydroxylamine prepared by other methods. The intrared spectrum showed bands at 3 150 (NH) and l 650 cm-1 (C=O). The remaining solution of ether-petroleum ether was evaporated to give a solid which was identified as benzyl-0-benzylanisobydroximate (25%}. m.p. 10• (Found: C, 75.41 ; H, 6.32 ; N, 4.15. CuH11N08 calcd. for: C, 75.34 J H, 6.05 ; N. 4.1()%). The ir spectrum showed a single band at 1 590 ,om-1 {C=N), and the peaks corresponding to NH and C= 0 groups were absent. The hydroxamic acids (3) : Various bydroxamic acids were prepared by the modified method of Warren and Warren11 and are reported in Table 2. The hydroxamic acids (3) : Various bydroxamic acids were prepared by the modified method of Warren and Warren11 and are reported in Table 2. TABI.IC li-PBYSICAI, DA'rA OF HYDB.OXAMIC ACIDS (3) Sl. B M.p. %Yield ~ ~ % 1. 2. s. 12'1-28 162 164-65 80.0 60.0 65 0 0-Acylhydroxamic acids. Some Studies towards Preparation of N-Acyl-0-alkylhydroxylamines and 0-Acylhydroxamic Acids The ir spectrum showed bands at 3 150 (NH) and 1 650 cm-1 (C=O). Further, when the compound was mixed with the standard sample of N-anisoyl-0-benzylhydroxyl· amine, the melting point showed no depression. Since by this process the phase transfer agent brings the transferred species in the reactive form, that is why phase transfer catalysed alkylation proceeds with greater facility. An alternative explanation for enhanced reaction in the presence of phase transfer agent is that a weak complex is formed in which the alkyl halide penetrates into the alkyl group around nitrogen of quaternary compound and such complex may help in the formation of a "push and pull'' transition state. Hydroxamic acids have been reported to undergo a wide variety of reactions. However, very little information is available on their acylation studies10. In the present paper we present a few 0-acylbydro- xamic acids (4) prepared by acylation of different hydroxamic acids. The importance of these 0-acyl- hydroxamic acids lies in the fact that they may possess some pharmacological activity. Other N-acyl-0-alkylhydroxylamines prepared by this method are presented in Table I. StNOHA & MISRA I SOMB STUDIBS TOWARDS PREPARATION OP N·ACYL•O•ALKYLHYDROXYLAMIN~S etc. StNOHA & MISRA I SOMB STUDIBS TOWARDS PREPARATION OP N·ACYL•O•ALKYLHYDROXYLAMIN~S etc. crude product. The product recrystallised from ethanol, (60%), m.p. 158-59 (Found: C,5885: H, 3.60; N, 9.85. CuH10N 110 6 calcd. for: C, 58.74; H, 3.49: N, 9.78%). The infrared spectrum showed bands 1 640 (C=O of amide), 1 765 (C=O of ester), 1 520 (N011 ) and 3100 cm-1 (NH) ; 8 (CDCI8 +TFA) 7.66 (m, Ar). crude product. The product recrystallised from ethanol, (60%), m.p. 158-59 (Found: C,5885: H, 3.60; N, 9.85. CuH10N 110 6 calcd. for: C, 58.74; H, 3.49: N, 9.78%). The infrared spectrum showed bands 1 640 (C=O of amide), 1 765 (C=O of ester), 1 520 (N011 ) and 3100 cm-1 (NH) ; 8 (CDCI8 +TFA) 7.66 (m, Ar). Experimental Preparation of 0-p- nitrobenzoylbenzohydroxamic acid: Benzohydroxamic acid (O.Ol mol) was mixed with p-nitrobeozoyl chloride (0.01 mol) in anhydrous pyridine (25 ml) and the reaction mixture was stirred at room tem- perature for 8 h. Upon addition of distilled water (25 ml) to the reaction mixture the resulting pre- cipitate was allowed to settle. The supernatant layer was decanted off. The crude precipitate was dissol- ved in a minimum amount of absolute ethanol and the solution passed through alumina column. The column was eluted with ethanol. The ethanol fraction thus collected was evaporated to give a 102 RefereucH 1. R. T. OouTrs, Oan.J. Pharm. Sci.,1967,J, 27. 51. B. T. OoU'l"J.'S, J. w. HUBBARD, X. K. MIDHA a.nd K. PRASAD, J, Pharm. Sci.,1971, 28, CO, 8. J. H. Oooutv, W, D. BILLS and J. B. T. MoB.TON,J, Org. Ohem., 1960, 25, 1784. '· A. B. SINGH A a.nd B. N. MISRA, Indian J, Ohem., Sect. B, 19851, 21, 861. The other acylated derivatives were also prepared by the method described above and the results are reported in Table 3. II. B. N. MISRA, A. 8. BtMGHA, G. B. CHAUHAN a.nd R. P. SHARMA, IndiaKJ, Ohem., Sect. B, 198,, 23, 7f.i8. TABL:S: 8-PHYSICAL DATA OJil 00MPOUNDS 4 81. R R" M.p. Yield ~ ~ % Acknowledgement 1£9-150 11!6 -157 1118-59 1715-76 177-78 78.0 76.0 60.0 611.0 70.0 One of the authors (A.S.S.) is thankful to Dr. R. .. c. Chauhan, Principal, Regional Engineering College, Hamirpur, for facilities. 6. J. M. Mrr.t.:S:R, X. H. So and J. H. CLARK, Oan.J. Ohem., 1979, 57, 1887. TABL:S: 8-PHYSICAL DATA OJil 00MPOUNDS 4 81. R R" M.p. Yield ~ ~ % 1£9-150 11!6 -157 1118-59 1715-76 177-78 78.0 76.0 60.0 611.0 70.0 7. 0. M. B'L'ARXS and 0. LIO't'tA, ''Phase Transfer Oa.talyaia", Academic, New York, 1978. 8. M. MAxoszA and B. B:S:RAPINOV A, ROOZ. Ohem., 19615, 39, 1229. 9. A. B. BtNGHA and B. N. MISRA, Indian J. Ohem., Sect. B, 19815, 24, 10611. 10. W. B. B:S:NJiiROW and 0. R. HAUSAR, / • .A.m. Ohem. SOIJ., 1997,59, 2SOB. 11. M. M. WARREN a.nd W. B. WARR:S:N.J. tlm. "Ohtm. Soc., 19156,77, 1068 • 103
https://openalex.org/W2155989131
https://journals.iucr.org/e/issues/2010/10/00/zl2307/zl2307.pdf
Sinhala, Sinhalese
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Diaquabis(1,10-phenanthroline)nickel(II) tetrakis(cyanido-κ<i>C</i>)nickelate(II) tetrahydrofuran solvate monohydrate
Acta crystallographica. Section E
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metal-organic compounds metal-organic compounds Experimental Crystal data [Ni(C12H8N2)2(H2O)2][Ni(CN)4]- C4H8OH2O Mr = 708.06 Monoclinic, P21=n a = 11.4623 (3) A˚ b = 14.3184 (4) A˚ c = 19.2329 (4) A˚  = 91.189 (2) V = 3155.86 (14) A˚ 3 Z = 4 Mo K radiation  = 1.24 mm1 T = 296 K 0.25  0.23  0.18 mm Data collection Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996) Tmin = 0.746, Tmax = 0.807 29619 measured reflections 6199 independent reflections 3756 reflections with I > 2(I) Rint = 0.098 Refinement R[F 2 > 2(F 2)] = 0.048 wR(F 2) = 0.119 S = 1.02 6199 reflections 436 parameters 70 restraints H-atom parameters constrained max = 0.36 e A˚ 3 min = 0.39 e A˚ 3 Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368  = 91.189 (2) V = 3155.86 (14) A˚ 3 Z = 4 Mo K radiation  = 1.24 mm1 T = 296 K 0.25  0.23  0.18 mm Table 1 The title complex, [Ni(C12H8N2)2(H2O)2][Ni(CN)4]C4H8O- H2O, consists of a cationic [Ni(C12H8N2)2(H2O)2]2+ unit, an anionic [Ni(CN)4]2 unit, one uncoordinated water and one tetrahydrofuran molecule. In the cationic unit, the Ni2+ atom is coordinated by four N atoms and two O atoms from two 1,10- phenanthroline ligands and two water molecules in a distorted octahedral coordination environment. In the anionic unit, the Ni2+ atom is in a square-planar coordination by four C atoms from four monodentate terminal cyanide ligands. O—H  N and O—H  O hydrogen bonds link neighboring cationic and anionic units, forming a three-dimensional supramolecular network. The interstitial tetrahydrofuran molecule is inde- pendently disordered over two sites in a 1:1 ratio. D—H  A D—H H  A D  A D—H  A O4—H4A  N8i 0.84 2.02 2.857 (6) 173 O2—H2A  O4ii 0.82 2.30 3.116 (5) 173 O2—H2B  N5iii 0.79 2.60 3.154 (5) 128 O1—H1B  N5iii 0.86 2.63 3.377 (6) 147 O1—H1B  N5iii 0.86 2.63 3.377 (6) 147 O1—H1A  N6iv 0.90 2.39 3.250 (5) 161 O4—H4B  N7 0.83 1.99 2.804 (5) 167 Symmetry codes: (i) x þ 3 2; y þ 1 2; z þ 3 2; (ii) x þ 3 2; y  1 2; z þ 1 2; (iii) x þ 1; y; z þ 1; (iv) x þ 1 2; y þ 1 2; z  1 2. Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL. Related literature For general background to cyanido–metal complexes, see: Miyasaka et al. (2007); Shatruk et al. (2009); Kou et al. (2001); Paharova et al. (2003); Yuge et al. (1996); Yun et al. (2004). This work was supported by East China Jiaotong Univer- sity. Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2307). References Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Kou, H. Z., Gao, S., Bai, Q. & Wang, Z. M. (2001). Inorg. Chem. 40, 6287–6294. Miyasaka, H., Saitoh, A. & Abe, S. (2007). Coord. Chem. Rev. 251, 2622–2664. Paharova, J., Cernak, J., Boca, R. & Zak, Z. (2003). Inorg. Chim. Acta, 346, 25– 31. Shatruk, M., Avendano, C. & Dunbar, K. R. (2009). Prog. Inorg. Chem. 56, 155–334. Sheldrick, G. M. (1996). SADABS. University of Go¨ttingen, Germany. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Yuge, H., Noda, Y. & Iwamoto, T. (1996). Inorg. Chem. 35, 1842–1848. Yun, S. S., Moon, H. S., Kim, C. H. & Lee, S. G. (2004). J. Coord. Chem. 57, 17– 23. Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2307). Zhi-li Fanga* and Jun Wangb aSchool of Basic Science, East China Jiaotong University, Nanchang 330013, People’s Republic of China, and bZhongshan Polytechnic, Zhongshan, Guangdong 528404, People’s Republic of China Correspondence e-mail: wangjun7203@126.com 70 restraints H-atom parameters constrained max = 0.36 e A˚ 3 min = 0.39 e A˚ 3 Received 8 September 2010; accepted 15 September 2010 Received 8 September 2010; accepted 15 September 2010 Key indicators: single-crystal X-ray study; T = 296 K; mean (C–C) = 0.007 A˚; disorder in main residue; R factor = 0.048; wR factor = 0.119; data-to-parameter ratio = 14.2. S2. Experimental Nickel cyanide (0.1107 g, 1 mmol) and 1,10-phenanthroline (0.1801 g, 1 mmol) were added to a mixture of water (10 mL) and tetrahydrofuran (5 mL). The resultant mixture was sealed in a 25 ml stainless steel reactor with a Teflon liner and kept under autogenous pressure at 413 K for 24 h, and then cooled to room temperature at a rate of 0.5 K/min. Green block shaped crystals of the title compound suitable for single-crystal X-ray diffraction analysis formed with a yield of approximately 56% based on 1,10-phenanthroline. S1. Comment The study of cyanide-bridged complexes has gained great recognition over the last decade not only owing to their fascinating structural diversity and their intriguing topological networks, but also because of interesting magnetic properties, such as spin-crossover behaviour or the formation of single-molecular or single-chain magnets (Miyasaka et al., 2007; Shatruk et al., 2009). To date, much effort has been invested to construct cyanide-based complexes by the choice of versatile metal cyanide or cyanide-based building units (Kou et al., 2001; Yun et al., 2004; Yuge et al., 1996). In this context we have chosen nickel cyanide as a potential bridging building block, and 1,10-phenanthroline as an auxilary ligand to construct new structures. Reaction of the two building blocks yielded the title compound [Ni(C12H8N2)2(H2O)2].[Ni(CN)4].C4H8O.H2O. As depicted in Fig. 1, the structure of the title compound, consists of a cationic [Ni(C12H8N2)2(H2O)2]2+ unit, an anionic [Ni(CN)4]2- unit, and each one interstitial water and tetrahydrofuran molecule. Thus no cyano bridged complex with different nickel centers was formed but the nickel atoms are found in separate anionic and a cationic complex ions. In the cationic unit, the six-coordinate octahedral Ni2+ center is surrounded by four N atoms and two O atoms from two 1,10- phenanthroline ligands and two water molecules. In the anionic unit, the square planar Ni2+ center is coordinated by four C atoms from four mono-dentate terminal cyanide ligands. Similar structures containing Ni(CN)4 units have been observed in other complexes (Paharova et al., 2003). O—H···N and O—H···O hydrogen bonds (Table 1) are formed between the cationic units, the anionic units and the uncoordinating water molecules which assemble them to form a three-dimensional supramolecular network (Fig. 2). The network is also stabilized by π-π stacking interactions between the Ni(CN)4 units and the 1,10-phenanthroline ligands. The interplanar distance between them is ca. 3.60 Å (symmetry operator for the 1,10-phenanthroline ligand: 0.5+x, 0.5-y, -0.5+z). The interstitial tetrahydrofuran molecule is independently disordered over two sites in a one to one ratio (see refinement section for details). Acta Cryst. (2010). E66, m1285 [doi:10.1107/S1600536810036974] Acta Cryst. (2010). E66, m1285 [doi:10.1107/S1600536810036974] Acta Cryst. (2010). E66, m1285 [doi:10.1107/S1600536810036974] Acta Cryst. (2010). E66, m1285 [doi:10.1107/S1600536810036974] Acta Cryst. (2010). E66, m1285 [doi:10.1107/S1600536810036974] References Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Kou, H. Z., Gao, S., Bai, Q. & Wang, Z. M. (2001). Inorg. Chem. 40, 6287–6294. Miyasaka, H., Saitoh, A. & Abe, S. (2007). Coord. Chem. Rev. 251, 2622–2664. Paharova, J., Cernak, J., Boca, R. & Zak, Z. (2003). Inorg. Chim. Acta, 346, 25– 31. Sh k M A d C & D b K R (2009) P I Ch 56 Shatruk, M., Avendano, C. & Dunbar, K. R. (2009). Prog. Inorg. Chem. 56, 155–334. Sheldrick, G. M. (1996). SADABS. University of Go¨ttingen, Germany. Sh ld i k G M (2008) A C A64 112 122 ( ) y Yuge, H., Noda, Y. & Iwamoto, T. (1996). Inorg. Chem. 35, 1842–1848. g , , , , ( ) g , Yun, S. S., Moon, H. S., Kim, C. H. & Lee, S. G. (2004). J. Coord. Chem. 57, 17– 23. Acta Cryst. (2010). E66, m1285 Fang and Wang m1285 m1285 Fang and Wang m doi:10.1107/S1600536810036974 supporting information Figure 1 The structure of the title compound, showing the atomic numbering scheme. Non-H atoms are shown with 30% probability displacement ellipsoids. The disordered section is omitted for clarity. Figure 2 Figure 2 supporting information indicating disorder. The THF molecule was thus refined as being disordered over two sites in a one to one ratio. Due to the significant overlap of the disordered atoms the following restraints and constraints were applied: The adps of the disordered atoms were restrained to be close to isotropic and those of equivalent atoms were set to be identical. indicating disorder. The THF molecule was thus refined as being disordered over two sites in a one to one ratio. Due to the significant overlap of the disordered atoms the following restraints and constraints were applied: The adps of the disordered atoms were restrained to be close to isotropic and those of equivalent atoms were set to be identical. All water H atoms were tentatively located in difference density Fourier maps and were refined with O–H distance restraints of 0.83 (1) Å and with Uiso(H) = 1.5 Ueq(O). In the last stage of the refinement, they were treated as riding on their parent O atoms. All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97Å (tetrahydrofuran ring) and Uiso(H) = 1.2Ueq(C). S3. Refinement The tetrahydrofuran molecules are arranged as symmetry related pairs around a center of inversion. In the original refinement the oxygen atoms of the tetrahydrofuran molecules showed significantly elongated thermal ellipsoids sup-1 Acta Cryst. (2010). E66, m1285 supporting information Diaquabis(1,10-phenanthroline)nickel(II) tetrakis(cyanido-κC)nickelate(II) tetrahydrofuran solvate monohydrate F(000) = 1464 Dx = 1.490 Mg m−3 Mo Kα radiation, λ = 0.71073 Å Cell parameters from 4500 reflections θ = 1.3–28.0° µ = 1.24 mm−1 T = 296 K Block, green 0.25 × 0.23 × 0.18 mm F(000) = 1464 Dx = 1.490 Mg m−3 Mo Kα radiation, λ = 0.71073 Å Cell parameters from 4500 reflections θ = 1.3–28.0° µ = 1.24 mm−1 T = 296 K Block, green 0.25 × 0.23 × 0.18 mm 29619 measured reflections 6199 independent reflections 3756 reflections with I > 2σ(I) Rint = 0.098 θmax = 26.0°, θmin = 1.8° h = −14→13 k = −17→15 l = −23→23 29619 measured reflections 6199 independent reflections 3756 reflections with I > 2σ(I) Rint = 0.098 θmax = 26.0°, θmin = 1.8° h = −14→13 k = −17→15 l = −23→23 Secondary atom site location: difference Fourier map Hydrogen site location: inferred from neighbouring sites H-atom parameters constrained w = 1/[σ2(Fo2) + (0.0447P)2 + 1.097P] where P = (Fo2 + 2Fc2)/3 (Δ/σ)max = 0.001 Δρmax = 0.36 e Å−3 Δρmin = −0.39 e Å−3 Secondary atom site location: difference Fourier map Hydrogen site location: inferred from neighbouring sites H-atom parameters constrained w = 1/[σ2(Fo2) + (0.0447P)2 + 1.097P] where P = (Fo2 + 2Fc2)/3 (Δ/σ)max = 0.001 Δρmax = 0.36 e Å−3 Δρmin = −0.39 e Å−3 Figure 2 g View of the three-dimensional structure of the title compound, view down the direction of the a-axis. Dashed lines indicate hydrogen bonds. g View of the three-dimensional structure of the title compound, view down the direction of the a-axis. Dashed lines indicate hydrogen bonds. View of the three-dimensional structure of the title compound, view down the direction of the a-axis. Dashed lines indicate hydrogen bonds. sup-2 Acta Cryst. (2010). E66, m1285 supporting information Diaquabis(1,10-phenanthroline)nickel(II) tetrakis(cyanido-κC)nickelate(II) tetrahydrofuran solvate monohydrate Crystal data [Ni(C12H8N2)2(H2O)2][Ni(CN)4]·C4H8O·H2O Mr = 708.06 Monoclinic, P21/n Hall symbol: -P 2yn a = 11.4623 (3) Å b = 14.3184 (4) Å c = 19.2329 (4) Å β = 91.189 (2)° V = 3155.86 (14) Å3 Z = 4 F(000) = 1464 Dx = 1.490 Mg m−3 Mo Kα radiation, λ = 0.71073 Å Cell parameters from 4500 reflections θ = 1.3–28.0° µ = 1.24 mm−1 T = 296 K Block, green 0.25 × 0.23 × 0.18 mm Data collection Bruker APEXII CCD area-detector diffractometer Radiation source: fine-focus sealed tube Graphite monochromator φ and ω scan Absorption correction: multi-scan (SADABS; Sheldrick, 1996) Tmin = 0.746, Tmax = 0.807 29619 measured reflections 6199 independent reflections 3756 reflections with I > 2σ(I) Rint = 0.098 θmax = 26.0°, θmin = 1.8° h = −14→13 k = −17→15 l = −23→23 Refinement Refinement on F2 Least-squares matrix: full R[F2 > 2σ(F2)] = 0.048 wR(F2) = 0.119 S = 1.02 6199 reflections 436 parameters 70 restraints Primary atom site location: structure-invariant direct methods Secondary atom site location: difference Fourier map Hydrogen site location: inferred from neighbouring sites H-atom parameters constrained w = 1/[σ2(Fo2) + (0.0447P)2 + 1.097P] where P = (Fo2 + 2Fc2)/3 (Δ/σ)max = 0.001 Δρmax = 0.36 e Å−3 Δρmin = −0.39 e Å−3 S i l d t il Special details Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) x y z Uiso*/Ueq Occ. (<1) Ni1 0.73838 (4) 0.17737 (3) 0.04274 (2) 0.03482 (15) Ni2 0.48209 (5) 0.20766 (4) 0.79200 (3) 0.04305 (17) C1 0.4836 (4) 0.1426 (3) 0.0908 (2) 0.0572 (12) H1 0.4828 0.0911 0.0613 0.069* Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) x y z U */U l atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) sup-3 Acta Cryst. (2010). Special details E66, m1285 supporting information C2 0.3846 (4) 0.1617 (4) 0.1285 (3) 0.0663 (14) H2 0.3194 0.1232 0.1242 0.080* C3 0.3831 (4) 0.2367 (4) 0.1717 (2) 0.0600 (13) H3 0.3171 0.2498 0.1973 0.072* C4 0.4824 (4) 0.2947 (3) 0.1775 (2) 0.0462 (11) C5 0.4898 (4) 0.3746 (3) 0.2216 (2) 0.0576 (13) H5 0.4256 0.3917 0.2475 0.069* C6 0.5879 (5) 0.4254 (4) 0.2262 (2) 0.0605 (13) H6 0.5898 0.4781 0.2546 0.073* C7 0.6894 (4) 0.4006 (3) 0.1886 (2) 0.0453 (11) C8 0.7965 (4) 0.4469 (3) 0.1947 (2) 0.0558 (12) H8 0.8040 0.4991 0.2232 0.067* C9 0.8898 (4) 0.4154 (3) 0.1589 (2) 0.0576 (12) H9 0.9619 0.4447 0.1641 0.069* C10 0.8768 (4) 0.3390 (3) 0.1145 (2) 0.0449 (10) H10 0.9406 0.3194 0.0892 0.054* C11 0.6845 (3) 0.3236 (3) 0.14461 (19) 0.0374 (9) C12 0.5792 (3) 0.2690 (3) 0.13842 (19) 0.0385 (10) C13 0.9954 (4) 0.1386 (3) 0.0009 (2) 0.0487 (11) H13 0.9990 0.0966 0.0378 0.058* C14 1.0949 (4) 0.1500 (3) −0.0389 (2) 0.0572 (12) H14 1.1623 0.1163 −0.0286 0.069* C15 1.0920 (4) 0.2110 (4) −0.0931 (2) 0.0600 (13) H15 1.1574 0.2193 −0.1202 0.072* C16 0.9890 (4) 0.2616 (3) −0.1077 (2) 0.0491 (11) C17 0.9790 (5) 0.3292 (4) −0.1628 (2) 0.0605 (13) H17 1.0429 0.3416 −0.1904 0.073* C18 0.8782 (5) 0.3746 (3) −0.1747 (2) 0.0590 (13) H18 0.8738 0.4185 −0.2103 0.071* C19 0.7774 (4) 0.3571 (3) −0.1341 (2) 0.0473 (11) C20 0.6690 (5) 0.4007 (3) −0.1461 (2) 0.0621 (13) H20 0.6601 0.4448 −0.1813 0.074* C21 0.5770 (5) 0.3779 (4) −0.1056 (3) 0.0673 (14) H21 0.5043 0.4052 −0.1137 0.081* C22 0.5928 (4) 0.3134 (3) −0.0518 (2) 0.0520 (12) H22 0.5296 0.2993 −0.0242 0.062* C23 0.7853 (4) 0.2925 (3) −0.07893 (19) 0.0381 (9) C24 0.8938 (3) 0.2446 (3) −0.0653 (2) 0.0373 (10) C29 0.4221 (4) 0.1348 (3) 0.8642 (2) 0.0472 (11) C30 0.3446 (4) 0.2780 (3) 0.7844 (2) 0.0446 (10) C31 0.5426 (4) 0.2827 (3) 0.7224 (2) 0.0491 (11) C32 0.6215 (4) 0.1392 (4) 0.7953 (2) 0.0558 (12) N1 0.7769 (3) 0.2932 (2) 0.10702 (15) 0.0370 (8) N2 0.5797 (3) 0.1947 (2) 0.09474 (16) 0.0420 (8) N3 0.8970 (3) 0.1838 (2) −0.01070 (15) 0.0364 (8) N4 0.6931 (3) 0.2713 (2) −0.03846 (17) 0.0402 (8) N5 0.3878 (3) 0.0904 (3) 0.9091 (2) 0.0645 (11) N6 0.2622 (4) 0.3222 (3) 0.7757 (2) 0.0596 (10) sup-4 Acta Cryst. (2010). Special details E66, m1285 supporting information N7 0.5781 (4) 0.3302 (3) 0.6793 (2) 0.0723 (13) N8 0.7067 (4) 0.0987 (4) 0.7970 (3) 0.0916 (16) O1 0.8002 (3) 0.0868 (2) 0.12306 (16) 0.0744 (10) H1A 0.7713 0.1075 0.1634 0.112* H1B 0.7781 0.0298 0.1231 0.112* O2 0.6793 (3) 0.0641 (2) −0.01813 (16) 0.0699 (9) H2B 0.6433 0.0173 −0.0162 0.105* H2A 0.7353 0.0480 −0.0414 0.105* O4 0.6238 (3) 0.5037 (2) 0.61803 (16) 0.0754 (10) H4B 0.6104 0.4566 0.6421 0.113* H4A 0.6749 0.5274 0.6444 0.113* C25 0.158 (5) 0.469 (3) −0.007 (2) 0.102 (8) 0.50 H25A 0.1659 0.5367 −0.0027 0.122* 0.50 H25B 0.0971 0.4568 −0.0411 0.122* 0.50 C26 0.272 (5) 0.429 (4) −0.032 (3) 0.105 (6) 0.50 H26A 0.2602 0.3880 −0.0713 0.126* 0.50 H26B 0.3279 0.4773 −0.0426 0.126* 0.50 C27 0.304 (6) 0.377 (4) 0.033 (3) 0.097 (8) 0.50 H27A 0.3687 0.4085 0.0569 0.116* 0.50 H27B 0.3302 0.3146 0.0211 0.116* 0.50 C28 0.202 (4) 0.370 (4) 0.082 (3) 0.099 (7) 0.50 H28A 0.1682 0.3080 0.0806 0.119* 0.50 H28B 0.2253 0.3853 0.1290 0.119* 0.50 O3 0.125 (2) 0.4346 (14) 0.0555 (12) 0.149 (8) 0.50 C26′ 0.264 (5) 0.448 (4) −0.024 (3) 0.105 (6) 0.50 H26C 0.2788 0.4398 −0.0731 0.126* 0.50 H26D 0.3039 0.5038 −0.0079 0.126* 0.50 C27′ 0.304 (6) 0.365 (4) 0.016 (3) 0.097 (8) 0.50 H27C 0.3790 0.3749 0.0396 0.116* 0.50 H27D 0.3072 0.3087 −0.0119 0.116* 0.50 C28′ 0.204 (4) 0.363 (4) 0.067 (3) 0.099 (7) 0.50 H28C 0.1959 0.3007 0.0862 0.119* 0.50 H28D 0.2195 0.4061 0.1047 0.119* 0.50 C25′ 0.134 (5) 0.457 (3) −0.013 (2) 0.102 (8) 0.50 H25C 0.1159 0.5176 0.0071 0.122* 0.50 H25D 0.0909 0.4506 −0.0565 0.122* 0.50 O3′ 0.1045 (16) 0.3878 (11) 0.0316 (9) 0.097 (5) 0.50 O4 0.6238 (3) 0.5037 (2) 0.61803 (16) 0.0754 (10) H4B 0.6104 0.4566 0.6421 0.113* H4A 0.6749 0.5274 0.6444 0.113* C25 0.158 (5) 0.469 (3) −0.007 (2) 0.102 (8) 0.50 H25A 0.1659 0.5367 −0.0027 0.122* 0.50 H25B 0.0971 0.4568 −0.0411 0.122* 0.50 C26 0.272 (5) 0.429 (4) −0.032 (3) 0.105 (6) 0.50 H26A 0.2602 0.3880 −0.0713 0.126* 0.50 H26B 0.3279 0.4773 −0.0426 0.126* 0.50 C27 0.304 (6) 0.377 (4) 0.033 (3) 0.097 (8) 0.50 H27A 0.3687 0.4085 0.0569 0.116* 0.50 H27B 0.3302 0.3146 0.0211 0.116* 0.50 C28 0.202 (4) 0.370 (4) 0.082 (3) 0.099 (7) 0.50 H28A 0.1682 0.3080 0.0806 0.119* 0.50 H28B 0.2253 0.3853 0.1290 0.119* 0.50 O3 0.125 (2) 0.4346 (14) 0.0555 (12) 0.149 (8) 0.50 C26′ 0.264 (5) 0.448 (4) −0.024 (3) 0.105 (6) 0.50 H26C 0.2788 0.4398 −0.0731 0.126* 0.50 H26D 0.3039 0.5038 −0.0079 0.126* 0.50 C27′ 0.304 (6) 0.365 (4) 0.016 (3) 0.097 (8) 0.50 H27C 0.3790 0.3749 0.0396 0.116* 0.50 H27D 0.3072 0.3087 −0.0119 0.116* 0.50 C28′ 0.204 (4) 0.363 (4) 0.067 (3) 0.099 (7) 0.50 H28C 0.1959 0.3007 0.0862 0.119* 0.50 H28D 0.2195 0.4061 0.1047 0.119* 0.50 C25′ 0.134 (5) 0.457 (3) −0.013 (2) 0.102 (8) 0.50 H25C 0.1159 0.5176 0.0071 0.122* 0.50 H25D 0.0909 0.4506 −0.0565 0.122* 0.50 O3′ 0.1045 (16) 0.3878 (11) 0.0316 (9) 0.097 (5) 0.50 Atomic displacement parameters (Å2) U11 U22 U33 U12 U13 U23 Ni1 0.0352 (3) 0.0362 (3) 0.0333 (3) −0.0028 (2) 0.0057 (2) −0.0022 (2) Ni2 0.0407 (3) 0.0463 (4) 0.0423 (3) −0.0016 (3) 0.0050 (2) 0.0095 (2) C1 0.050 (3) 0.065 (3) 0.057 (3) −0.013 (2) 0.010 (2) −0.008 (2) C2 0.043 (3) 0.085 (4) 0.071 (3) −0.016 (3) 0.015 (3) −0.002 (3) C3 0.040 (3) 0.086 (4) 0.054 (3) 0.002 (3) 0.015 (2) 0.000 (3) C4 0.045 (3) 0.058 (3) 0.037 (2) 0.009 (2) 0.0071 (19) 0.003 (2) C5 0.053 (3) 0.064 (3) 0.056 (3) 0.018 (3) 0.013 (2) −0.010 (2) Atomic displacement parameters (Å2) U11 U22 U33 U12 U13 U23 Ni1 0.0352 (3) 0.0362 (3) 0.0333 (3) −0.0028 (2) 0.0057 (2) −0.0022 (2) Ni2 0.0407 (3) 0.0463 (4) 0.0423 (3) −0.0016 (3) 0.0050 (2) 0.0095 (2) C1 0.050 (3) 0.065 (3) 0.057 (3) −0.013 (2) 0.010 (2) −0.008 (2) C2 0.043 (3) 0.085 (4) 0.071 (3) −0.016 (3) 0.015 (3) −0.002 (3) C3 0.040 (3) 0.086 (4) 0.054 (3) 0.002 (3) 0.015 (2) 0.000 (3) C4 0.045 (3) 0.058 (3) 0.037 (2) 0.009 (2) 0.0071 (19) 0.003 (2) C5 0.053 (3) 0.064 (3) 0.056 (3) 0.018 (3) 0.013 (2) −0.010 (2) Atomic displacement parameters (Å2) sup-5 Acta Cryst. Acta Cryst. (2010). E66, m1285 Special details (2010). Special details E66, m1285 supporting information C6 0.070 (4) 0.059 (3) 0.053 (3) 0.014 (3) 0.007 (3) −0.014 (2) C7 0.056 (3) 0.040 (3) 0.040 (2) 0.001 (2) −0.002 (2) −0.0076 (19) C8 0.072 (4) 0.042 (3) 0.053 (3) −0.003 (3) −0.003 (3) −0.015 (2) C9 0.055 (3) 0.050 (3) 0.068 (3) −0.011 (2) −0.009 (3) −0.002 (2) C10 0.041 (3) 0.046 (3) 0.048 (2) −0.008 (2) 0.002 (2) −0.006 (2) C11 0.040 (2) 0.036 (2) 0.036 (2) 0.0040 (19) 0.0036 (18) −0.0009 (18) C12 0.036 (2) 0.046 (3) 0.033 (2) 0.0026 (19) 0.0032 (18) −0.0014 (19) C13 0.049 (3) 0.052 (3) 0.045 (2) 0.007 (2) 0.002 (2) −0.001 (2) C14 0.039 (3) 0.066 (3) 0.066 (3) 0.010 (2) 0.007 (2) −0.005 (3) C15 0.043 (3) 0.078 (4) 0.060 (3) −0.001 (3) 0.025 (2) −0.005 (3) C16 0.046 (3) 0.052 (3) 0.049 (3) −0.005 (2) 0.012 (2) −0.004 (2) C17 0.066 (3) 0.068 (3) 0.048 (3) −0.017 (3) 0.017 (2) 0.004 (3) C18 0.077 (4) 0.062 (3) 0.039 (2) −0.007 (3) 0.007 (2) 0.010 (2) C19 0.056 (3) 0.045 (3) 0.041 (2) −0.006 (2) −0.001 (2) 0.000 (2) C20 0.076 (4) 0.056 (3) 0.054 (3) 0.005 (3) −0.011 (3) 0.014 (2) C21 0.055 (3) 0.074 (4) 0.072 (3) 0.009 (3) −0.019 (3) 0.002 (3) C22 0.036 (3) 0.064 (3) 0.056 (3) 0.006 (2) −0.001 (2) −0.001 (2) C23 0.043 (2) 0.037 (2) 0.034 (2) −0.0033 (19) 0.0004 (18) −0.0006 (18) C24 0.036 (2) 0.037 (2) 0.039 (2) −0.0033 (18) 0.0063 (18) −0.0044 (18) C29 0.044 (3) 0.046 (3) 0.052 (3) −0.004 (2) −0.002 (2) 0.004 (2) C30 0.051 (3) 0.049 (3) 0.035 (2) −0.005 (2) 0.004 (2) 0.007 (2) C31 0.042 (3) 0.060 (3) 0.045 (2) −0.001 (2) 0.001 (2) 0.004 (2) C32 0.051 (3) 0.065 (3) 0.052 (3) −0.001 (3) 0.004 (2) 0.016 (2) N1 0.038 (2) 0.0334 (19) 0.0398 (18) −0.0016 (15) 0.0025 (15) 0.0004 (15) N2 0.038 (2) 0.048 (2) 0.0403 (18) −0.0111 (17) 0.0066 (15) −0.0053 (16) N3 0.0343 (19) 0.040 (2) 0.0347 (17) 0.0029 (16) 0.0027 (14) 0.0003 (15) N4 0.037 (2) 0.038 (2) 0.0459 (19) −0.0004 (16) 0.0036 (16) −0.0017 (16) N5 0.068 (3) 0.062 (3) 0.064 (2) −0.005 (2) 0.010 (2) 0.024 (2) N6 0.054 (3) 0.063 (3) 0.062 (2) 0.009 (2) 0.011 (2) 0.009 (2) N7 0.075 (3) 0.079 (3) 0.064 (3) −0.016 (3) 0.011 (2) 0.026 (2) N8 0.059 (3) 0.104 (4) 0.112 (4) 0.027 (3) 0.018 (3) 0.042 (3) O1 0.100 (3) 0.067 (2) 0.0558 (19) −0.003 (2) 0.0047 (19) 0.0020 (17) O2 0.079 (2) 0.062 (2) 0.070 (2) −0.0121 (18) 0.0100 (18) −0.0100 (18) O4 0.095 (3) 0.067 (2) 0.064 (2) −0.014 (2) −0.0115 (19) 0.0090 (18) C25 0.11 (2) 0.109 (10) 0.092 (7) 0.014 (10) 0.004 (10) 0.025 (8) C26 0.099 (8) 0.131 (18) 0.085 (12) 0.029 (11) 0.017 (7) 0.027 (10) C27 0.077 (5) 0.122 (13) 0.09 (2) 0.020 (8) 0.015 (14) 0.009 (12) C28 0.078 (5) 0.135 (8) 0.084 (18) 0.023 (5) 0.017 (8) 0.027 (11) O3 0.112 (15) 0.155 (19) 0.18 (2) 0.059 (13) 0.037 (12) 0.055 (13) C26′ 0.099 (8) 0.131 (18) 0.085 (12) 0.029 (11) 0.017 (7) 0.027 (10) C27′ 0.077 (5) 0.122 (13) 0.09 (2) 0.020 (8) 0.015 (14) 0.009 (12) C28′ 0.078 (5) 0.135 (8) 0.084 (18) 0.023 (5) 0.017 (8) 0.027 (11) C25′ 0.11 (2) 0.109 (10) 0.092 (7) 0.014 (10) 0.004 (10) 0.025 (8) O3′ 0.069 (7) 0.111 (12) 0.111 (10) 0.004 (8) 0.000 (6) 0.046 (8) Acta Cryst. Special details E66, m1285 sup-6 supporting information Geometric parameters (Å, º) Ni1—O2 2.104 (3) C19—C20 1.405 (6) Ni1—N2 2.108 (3) C19—C23 1.410 (5) Ni1—N3 2.109 (3) C20—C21 1.364 (7) Ni1—N1 2.110 (3) C20—H20 0.9300 Ni1—N4 2.118 (3) C21—C22 1.396 (6) Ni1—O1 2.127 (3) C21—H21 0.9300 Ni2—C31 1.862 (5) C22—N4 1.318 (5) Ni2—C30 1.873 (5) C22—H22 0.9300 Ni2—C32 1.875 (5) C23—N4 1.360 (5) Ni2—C29 1.878 (5) C23—C24 1.439 (5) C1—N2 1.331 (5) C24—N3 1.365 (5) C1—C2 1.387 (6) C29—N5 1.149 (5) C1—H1 0.9300 C30—N6 1.147 (5) C2—C3 1.359 (6) C31—N7 1.154 (5) C2—H2 0.9300 C32—N8 1.135 (6) C3—C4 1.412 (6) O1—H1A 0.9004 C3—H3 0.9300 O1—H1B 0.8553 C4—C12 1.402 (5) O2—H2B 0.7882 C4—C5 1.424 (6) O2—H2A 0.8229 C5—C6 1.341 (6) O4—H4B 0.8335 C5—H5 0.9300 O4—H4A 0.8377 C6—C7 1.428 (6) C25—O3 1.356 (18) C6—H6 0.9300 C25—C26 1.512 (18) C7—C11 1.390 (5) C25—H25A 0.9700 C7—C8 1.398 (6) C25—H25B 0.9700 C8—C9 1.361 (6) C26—C27 1.496 (19) C8—H8 0.9300 C26—H26A 0.9700 C9—C10 1.394 (6) C26—H26B 0.9700 C9—H9 0.9300 C27—C28 1.517 (16) C10—N1 1.325 (5) C27—H27A 0.9700 C10—H10 0.9300 C27—H27B 0.9700 C11—N1 1.366 (5) C28—O3 1.365 (19) C11—C12 1.442 (5) C28—H28A 0.9700 C12—N2 1.356 (5) C28—H28B 0.9700 C13—N3 1.315 (5) C26′—C27′ 1.495 (19) C13—C14 1.396 (6) C26′—C25′ 1.513 (18) C13—H13 0.9300 C26′—H26C 0.9700 C14—C15 1.359 (6) C26′—H26D 0.9700 C14—H14 0.9300 C27′—C28′ 1.516 (16) C15—C16 1.408 (6) C27′—H27C 0.9700 C15—H15 0.9300 C27′—H27D 0.9700 C16—C24 1.397 (5) C28′—O3′ 1.365 (19) C16—C17 1.439 (6) C28′—H28C 0.9700 C17—C18 1.341 (7) C28′—H28D 0.9700 C17—H17 0.9300 C25′—O3′ 1.356 (18) C18—C19 1.430 (6) C25′—H25C 0.9700 Geometric parameters (Å, º) Geometric parameters (Å, ) Ni1—O2 2.104 (3) C19—C20 Ni1—N2 2.108 (3) C19—C23 Ni1—N3 2.109 (3) C20—C21 Ni1—N1 2.110 (3) C20—H20 Ni1—N4 2.118 (3) C21—C22 Ni1—O1 2.127 (3) C21—H21 Ni2—C31 1.862 (5) C22—N4 Ni2—C30 1.873 (5) C22—H22 Ni2—C32 1.875 (5) C23—N4 Ni2—C29 1.878 (5) C23—C24 C1—N2 1.331 (5) C24—N3 C1—C2 1.387 (6) C29—N5 C1—H1 0.9300 C30—N6 C2—C3 1.359 (6) C31—N7 C2—H2 0.9300 C32—N8 C3—C4 1.412 (6) O1—H1A C3—H3 0.9300 O1—H1B C4—C12 1.402 (5) O2—H2B C4—C5 1.424 (6) O2—H2A C5—C6 1.341 (6) O4—H4B C5—H5 0.9300 O4—H4A C6—C7 1.428 (6) C25—O3 C6—H6 0.9300 C25—C26 C7—C11 1.390 (5) C25—H25A C7—C8 1.398 (6) C25—H25B C8—C9 1.361 (6) C26—C27 C8—H8 0.9300 C26—H26A C9—C10 1.394 (6) C26—H26B C9—H9 0.9300 C27—C28 C10—N1 1.325 (5) C27—H27A C10—H10 0.9300 C27—H27B C11—N1 1.366 (5) C28—O3 C11—C12 1.442 (5) C28—H28A C12—N2 1.356 (5) C28—H28B C13—N3 1.315 (5) C26′—C27′ C13—C14 1.396 (6) C26′—C25′ C13—H13 0.9300 C26′—H26C C14—C15 1.359 (6) C26′—H26D C14—H14 0.9300 C27′—C28′ C15—C16 1.408 (6) C27′—H27C C15—H15 0.9300 C27′—H27D C16—C24 1.397 (5) C28′—O3′ C16—C17 1.439 (6) C28′—H28C C17—C18 1.341 (7) C28′—H28D C17—H17 0.9300 C25′—O3′ C18—C19 1.430 (6) C25′—H25C 2.104 (3) C19—C20 1.405 (6) 2.108 (3) C19—C23 1.410 (5) 2.109 (3) C20—C21 1.364 (7) 2.110 (3) C20—H20 0.9300 2.118 (3) C21—C22 1.396 (6) 2.127 (3) C21—H21 0.9300 1.862 (5) C22—N4 1.318 (5) 1.873 (5) C22—H22 0.9300 1.875 (5) C23—N4 1.360 (5) 1.878 (5) C23—C24 1.439 (5) 1.331 (5) C24—N3 1.365 (5) 1.387 (6) C29—N5 1.149 (5) 0.9300 C30—N6 1.147 (5) 1.359 (6) C31—N7 1.154 (5) 0.9300 C32—N8 1.135 (6) 1.412 (6) O1—H1A 0.9004 0.9300 O1—H1B 0.8553 1.402 (5) O2—H2B 0.7882 1.424 (6) O2—H2A 0.8229 1.341 (6) O4—H4B 0.8335 0.9300 O4—H4A 0.8377 1.428 (6) C25—O3 1.356 (18) 0.9300 C25—C26 1.512 (18) 1.390 (5) C25—H25A 0.9700 1.398 (6) C25—H25B 0.9700 1.361 (6) C26—C27 1.496 (19) 0.9300 C26—H26A 0.9700 1.394 (6) C26—H26B 0.9700 0.9300 C27—C28 1.517 (16) 1.325 (5) C27—H27A 0.9700 0.9300 C27—H27B 0.9700 1.366 (5) C28—O3 1.365 (19) 1.442 (5) C28—H28A 0.9700 1.356 (5) C28—H28B 0.9700 1.315 (5) C26′—C27′ 1.495 (19) 1.396 (6) C26′—C25′ 1.513 (18) 0.9300 C26′—H26C 0.9700 1.359 (6) C26′—H26D 0.9700 0.9300 C27′—C28′ 1.516 (16) 1.408 (6) C27′—H27C 0.9700 0.9300 C27′—H27D 0.9700 1.397 (5) C28′—O3′ 1.365 (19) 1.439 (6) C28′—H28C 0.9700 1.341 (7) C28′—H28D 0.9700 0.9300 C25′—O3′ 1.356 (18) 1.430 (6) C25′—H25C 0.9700 sup-7 Acta Cryst. Special details (2010). supporting information C18—H18 0.9300 C25′—H25D 0.9700 O2—Ni1—N2 94.81 (13) C22—C21—H21 120.3 O2—Ni1—N3 91.89 (12) N4—C22—C21 123.1 (4) N2—Ni1—N3 170.74 (13) N4—C22—H22 118.4 O2—Ni1—N1 173.25 (13) C21—C22—H22 118.4 N2—Ni1—N1 78.57 (12) N4—C23—C19 122.6 (4) N3—Ni1—N1 94.55 (12) N4—C23—C24 117.9 (3) O2—Ni1—N4 90.46 (12) C19—C23—C24 119.4 (4) N2—Ni1—N4 94.27 (13) N3—C24—C16 123.4 (4) N3—Ni1—N4 79.26 (12) N3—C24—C23 117.0 (3) N1—Ni1—N4 88.75 (12) C16—C24—C23 119.6 (4) O2—Ni1—O1 91.88 (13) N5—C29—Ni2 178.5 (4) N2—Ni1—O1 90.27 (13) N6—C30—Ni2 175.9 (4) N3—Ni1—O1 95.91 (13) N7—C31—Ni2 178.7 (4) N1—Ni1—O1 89.48 (13) N8—C32—Ni2 179.2 (5) N4—Ni1—O1 174.71 (13) C10—N1—C11 117.5 (3) C31—Ni2—C30 87.64 (18) C10—N1—Ni1 128.5 (3) C31—Ni2—C32 89.77 (19) C11—N1—Ni1 114.0 (2) C30—Ni2—C32 177.23 (18) C1—N2—C12 117.4 (4) C31—Ni2—C29 178.2 (2) C1—N2—Ni1 128.9 (3) C30—Ni2—C29 92.06 (18) C12—N2—Ni1 113.7 (3) C32—Ni2—C29 90.56 (19) C13—N3—C24 117.0 (3) N2—C1—C2 123.1 (4) C13—N3—Ni1 129.9 (3) N2—C1—H1 118.5 C24—N3—Ni1 113.2 (2) C2—C1—H1 118.5 C22—N4—C23 118.1 (4) C3—C2—C1 119.7 (5) C22—N4—Ni1 129.3 (3) C3—C2—H2 120.1 C23—N4—Ni1 112.5 (3) C1—C2—H2 120.1 Ni1—O1—H1A 107.6 C2—C3—C4 119.5 (4) Ni1—O1—H1B 119.2 C2—C3—H3 120.2 H1A—O1—H1B 101.6 C4—C3—H3 120.2 Ni1—O2—H2B 142.3 C12—C4—C3 116.7 (4) Ni1—O2—H2A 105.8 C12—C4—C5 119.5 (4) H2B—O2—H2A 101.7 C3—C4—C5 123.8 (4) H4B—O4—H4A 97.2 C6—C5—C4 121.0 (4) O3—C25—C26 113 (4) C6—C5—H5 119.5 O3—C25—H25A 108.9 C4—C5—H5 119.5 C26—C25—H25A 108.9 C5—C6—C7 121.4 (4) O3—C25—H25B 108.9 C5—C6—H6 119.3 C26—C25—H25B 108.9 C7—C6—H6 119.3 H25A—C25—H25B 107.7 C11—C7—C8 116.8 (4) C27—C26—C25 97 (5) C11—C7—C6 118.9 (4) C27—C26—H26A 112.3 C8—C7—C6 124.2 (4) C25—C26—H26A 112.3 C9—C8—C7 119.9 (4) C27—C26—H26B 112.3 C9—C8—H8 120.1 C25—C26—H26B 112.3 C7—C8—H8 120.1 C26—C27—C28 111 (5) C8—C9—C10 119.7 (4) C26—C27—H27A 109.4 0.9300 C25′—H25D 0.9700 94.81 (13) C22—C21—H21 120.3 91.89 (12) N4—C22—C21 123.1 (4) 170.74 (13) N4—C22—H22 118.4 173.25 (13) C21—C22—H22 118.4 78.57 (12) N4—C23—C19 122.6 (4) 94.55 (12) N4—C23—C24 117.9 (3) 90.46 (12) C19—C23—C24 119.4 (4) 94.27 (13) N3—C24—C16 123.4 (4) 79.26 (12) N3—C24—C23 117.0 (3) 88.75 (12) C16—C24—C23 119.6 (4) 91.88 (13) N5—C29—Ni2 178.5 (4) 90.27 (13) N6—C30—Ni2 175.9 (4) 95.91 (13) N7—C31—Ni2 178.7 (4) 89.48 (13) N8—C32—Ni2 179.2 (5) 174.71 (13) C10—N1—C11 117.5 (3) 87.64 (18) C10—N1—Ni1 128.5 (3) 89.77 (19) C11—N1—Ni1 114.0 (2) 177.23 (18) C1—N2—C12 117.4 (4) 178.2 (2) C1—N2—Ni1 128.9 (3) 92.06 (18) C12—N2—Ni1 113.7 (3) 90.56 (19) C13—N3—C24 117.0 (3) 123.1 (4) C13—N3—Ni1 129.9 (3) 118.5 C24—N3—Ni1 113.2 (2) 118.5 C22—N4—C23 118.1 (4) 119.7 (5) C22—N4—Ni1 129.3 (3) 120.1 C23—N4—Ni1 112.5 (3) 120.1 Ni1—O1—H1A 107.6 119.5 (4) Ni1—O1—H1B 119.2 120.2 H1A—O1—H1B 101.6 120.2 Ni1—O2—H2B 142.3 116.7 (4) Ni1—O2—H2A 105.8 119.5 (4) H2B—O2—H2A 101.7 123.8 (4) H4B—O4—H4A 97.2 121.0 (4) O3—C25—C26 113 (4) 119.5 O3—C25—H25A 108.9 119.5 C26—C25—H25A 108.9 121.4 (4) O3—C25—H25B 108.9 119.3 C26—C25—H25B 108.9 119.3 H25A—C25—H25B 107.7 116.8 (4) C27—C26—C25 97 (5) 118.9 (4) C27—C26—H26A 112.3 124.2 (4) C25—C26—H26A 112.3 119.9 (4) C27—C26—H26B 112.3 120.1 C25—C26—H26B 112.3 120.1 C26—C27—C28 111 (5) 119.7 (4) C26—C27—H27A 109.4 sup-8 Acta Cryst. Special details (2010). E66, m1285 supporting information supporting information C8—C9—H9 120.2 C28—C27—H27A 109.4 C10—C9—H9 120.2 C26—C27—H27B 109.4 N1—C10—C9 122.4 (4) C28—C27—H27B 109.4 N1—C10—H10 118.8 H27A—C27—H27B 108.0 C9—C10—H10 118.8 O3—C28—C27 104 (5) N1—C11—C7 123.6 (4) O3—C28—H28A 111.1 N1—C11—C12 116.1 (3) C27—C28—H28A 111.1 C7—C11—C12 120.2 (4) O3—C28—H28B 111.1 N2—C12—C4 123.5 (4) C27—C28—H28B 111.1 N2—C12—C11 117.5 (3) H28A—C28—H28B 109.0 C4—C12—C11 119.0 (4) C25—O3—C28 113 (4) N3—C13—C14 123.8 (4) C27′—C26′—C25′ 107 (5) N3—C13—H13 118.1 C27′—C26′—H26C 110.4 C14—C13—H13 118.1 C25′—C26′—H26C 110.4 C15—C14—C13 119.2 (4) C27′—C26′—H26D 110.4 C15—C14—H14 120.4 C25′—C26′—H26D 110.4 C13—C14—H14 120.4 H26C—C26′—H26D 108.6 C14—C15—C16 119.4 (4) C26′—C27′—C28′ 97 (5) C14—C15—H15 120.3 C26′—C27′—H27C 112.4 C16—C15—H15 120.3 C28′—C27′—H27C 112.4 C24—C16—C15 117.1 (4) C26′—C27′—H27D 112.4 C24—C16—C17 119.7 (4) C28′—C27′—H27D 112.4 C15—C16—C17 123.2 (4) H27C—C27′—H27D 110.0 C18—C17—C16 120.5 (4) O3′—C28′—C27′ 108 (5) C18—C17—H17 119.8 O3′—C28′—H28C 110.0 C16—C17—H17 119.8 C27′—C28′—H28C 110.0 C17—C18—C19 121.7 (4) O3′—C28′—H28D 110.0 C17—C18—H18 119.1 C27′—C28′—H28D 110.0 C19—C18—H18 119.1 H28C—C28′—H28D 108.4 C20—C19—C23 117.2 (4) O3′—C25′—C26′ 107 (4) C20—C19—C18 123.7 (4) O3′—C25′—H25C 110.4 C23—C19—C18 119.1 (4) C26′—C25′—H25C 110.4 C21—C20—C19 119.4 (4) O3′—C25′—H25D 110.4 C21—C20—H20 120.3 C26′—C25′—H25D 110.4 C19—C20—H20 120.3 H25C—C25′—H25D 108.6 C20—C21—C22 119.4 (5) C25′—O3′—C28′ 107 (4) C20—C21—H21 120.3 N1 C10 H10 118.8 H27A C27 H27B 108.0 C9—C10—H10 118.8 O3—C28—C27 104 (5) N1—C11—C7 123.6 (4) O3—C28—H28A 111.1 N1—C11—C12 116.1 (3) C27—C28—H28A 111.1 C7—C11—C12 120.2 (4) O3—C28—H28B 111.1 N2—C12—C4 123.5 (4) C27—C28—H28B 111.1 N2—C12—C11 117.5 (3) H28A—C28—H28B 109.0 C4—C12—C11 119.0 (4) C25—O3—C28 113 (4) N3—C13—C14 123.8 (4) C27′—C26′—C25′ 107 (5) N3—C13—H13 118.1 C27′—C26′—H26C 110.4 C14—C13—H13 118.1 C25′—C26′—H26C 110.4 C15—C14—C13 119.2 (4) C27′—C26′—H26D 110.4 C15—C14—H14 120.4 C25′—C26′—H26D 110.4 C13—C14—H14 120.4 H26C—C26′—H26D 108.6 C14—C15—C16 119.4 (4) C26′—C27′—C28′ 97 (5) C14—C15—H15 120.3 C26′—C27′—H27C 112.4 C16—C15—H15 120.3 C28′—C27′—H27C 112.4 C24—C16—C15 117.1 (4) C26′—C27′—H27D 112.4 C24—C16—C17 119.7 (4) C28′—C27′—H27D 112.4 C15—C16—C17 123.2 (4) H27C—C27′—H27D 110.0 C18—C17—C16 120.5 (4) O3′—C28′—C27′ 108 (5) C18—C17—H17 119.8 O3′—C28′—H28C 110.0 C16—C17—H17 119.8 C27′—C28′—H28C 110.0 C17—C18—C19 121.7 (4) O3′—C28′—H28D 110.0 C17—C18—H18 119.1 C27′—C28′—H28D 110.0 C19—C18—H18 119.1 H28C—C28′—H28D 108.4 C20—C19—C23 117.2 (4) O3′—C25′—C26′ 107 (4) C20—C19—C18 123.7 (4) O3′—C25′—H25C 110.4 C23—C19—C18 119.1 (4) C26′—C25′—H25C 110.4 C21—C20—C19 119.4 (4) O3′—C25′—H25D 110.4 C21—C20—H20 120.3 C26′—C25′—H25D 110.4 C19—C20—H20 120.3 H25C—C25′—H25D 108.6 C20—C21—C22 119.4 (5) C25′—O3′—C28′ 107 (4) C20—C21—H21 120.3 Hydrogen-bond geometry (Å, º) D—H···A D—H H···A D···A D—H···A O4—H4A···N8i 0.84 2.02 2.857 (6) 173 O2—H2A···O4ii 0.82 2.30 3.116 (5) 173 O2—H2B···N5iii 0.79 2.60 3.154 (5) 128 O1—H1B···N5iii 0.86 2.63 3.377 (6) 147 O1—H1B···N5iii 0.86 2.63 3.377 (6) 147 Hydrogen-bond geometry (Å, º) D—H···A D—H H···A D···A D—H···A O4—H4A···N8i 0.84 2.02 2.857 (6) 173 O2—H2A···O4ii 0.82 2.30 3.116 (5) 173 O2—H2B···N5iii 0.79 2.60 3.154 (5) 128 O1—H1B···N5iii 0.86 2.63 3.377 (6) 147 O1—H1B···N5iii 0.86 2.63 3.377 (6) 147 sup-9 Acta Cryst. supporting information (2010). E66, m1285 supporting information supporting information (2010). E66, m1285 supporting information O1—H1A···N6iv 0.90 2.39 3.250 (5) 161 O4—H4B···N7 0.83 1.99 2.804 (5) 167 Symmetry codes: (i) −x+3/2, y+1/2, −z+3/2; (ii) −x+3/2, y−1/2, −z+1/2; (iii) −x+1, −y, −z+1; (iv) x+1/2, −y+1/2, z−1/2. O1—H1A···N6iv O4—H4B···N7 sup-10 Acta Cryst. (2010). E66, m1285
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Retroperitoneal Mass: Lymphoma as Differential Diagnosis To Retroperitoneal Fibrosis. Case Report.
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Retroperitoneal Mass: Lymphoma as Differential Diagnosis To Retroperitoneal Fibrosis. Case Report. Madalina Nussberger  (  madalinarotaru88@yahoo.com ) Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Olaf Kim  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Sergio Cogliatti  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Thomas Neumann  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Research Article Keywords: retroperitoneal mass, retroperitoneal ¦brosis, lymphoma , case report Posted Date: July 19th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-536375/v1 License:   This work is licensed under a Creative Commons Attribution 4.0 International License.   Read Full License Version of Record: A version of this preprint was published at SN Comprehensive Clinical Medicine on January 7th, 2022. See the published version at https://doi.org/10.1007/s42399-021-01106-9. Retroperitoneal Mass: Lymphoma as Differential Diagnosis To Retroperitoneal Fibrosis. Case Report. Madalina Nussberger  (  madalinarotaru88@yahoo.com ) Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Olaf Kim  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Sergio Cogliatti  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Thomas Neumann  Cantonal Hospital Sankt Gallen: Kantonsspital Sankt Gallen Research Article Keywords: retroperitoneal mass, retroperitoneal ¦brosis, lymphoma , case report Posted Date: July 19th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-536375/v1 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at SN Comprehensive Clinical Medicine on January 7th, 2022. See the published version at https://doi.org/10.1007/s42399-021-01106-9. Research Article License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at SN Comprehensive Clinical Medicine on January 7th, 2022. See the published version at https://doi.org/10.1007/s42399-021-01106-9. Background The nature of a solid retroperitoneal mass can either be autoimmune or neoplastic and should be investigated by imaging and histology. The spectrum of differential diagnoses includes primarily retroperitoneal fibrosis and retroperitoneal tumors. Because treatments of retroperitoneal fibrosis and retroperitoneal tumors vary substantially, accurate and early diagnosis is highly relevant. Retroperitoneal mass: lymphoma as differential diagnosis to retroperitoneal fibrosis. Case report. Madalina Nussberger * a, Olaf Chan-Hi Kim b, Sergio Cogliatti c, Thomas Neumann a a Department of Rheumatology and Immunology, Cantonal Hospital St. Gallen, Switzerland b Department of Radiology, and nuclear medicine Cantonal Hospital St. Gallen, Switzerland c Institute of Pathology, Cantonal Hospital St. Gallen, St. Gallen, Switzerland Corresponding Author: Department of Rheumatology and Immunology, Cantonal Hospital St. Gallen Rorschacher Strasse 95, 9007 St. Gallen, Switzerland Case presentation We present a case of a fifty-four-year old woman that was admitted to our hospital with stroke like symptoms. Suspecting a vasculitis, magnet resonance imaging of the head and abdomen were done, which revealed a circular enhancement of a cranial vessel as well as retroperitoneal and peri-aortic masses. Concerning this specific radiographic patterns, an autoimmune process like retroperitoneal fibrosis was hypothesized. Steroid treatment did not lead to significant remission though. On re-evaluation of the mass because of refractory disease, fine needle aspiration did not show malignant cells while surgery and histologic assessment revealed neoplastic lymphoproliferation. The final diagnosis was a non- Hodgkin B- Cell Lymphoma. Chemo- and Immunotherapy was initiated. A control abdominal computer tomography was performed which revealed a significant remission of the retroperitoneal mass. 1 Background Retroperitoneal masses can be a diagnostic challenge for clinicians because radiologic findings may suggest a number of possible diagnoses. The main differential diagnosis is retroperitoneal fibrosis (RF) which consists of chronic soft tissue fibrosis in the retroperitoneum, often leading to compression of retroperitoneal organs (i.e. obstructive mega-ureter/hydronephrosis and renal failure) and/or compression of veins, arteries, and lymphatic vessels leading to edema, Retroperitoneal masses can be a diagnostic challenge for clinicians because radiologic findings may suggest a number of possible diagnoses. The main differential diagnosis is retroperitoneal fibrosis (RF) which consists of chronic soft tissue fibrosis in the retroperitoneum, often leading to compression of retroperitoneal organs (i.e. obstructive mega-ureter/hydronephrosis and renal failure) and/or compression of veins, arteries, and lymphatic vessels leading to edema, thrombotic disease, hydrocele, and claudication (1). In the retroperitoneum, lymphoma is the most frequent malignant tumor after retroperitoneal sarcoma (2,3), but metastases originating from germ cell tumors or other epithelial tumors may also be seen in the retroperitoneal space (2). However, the retroperitoneal space is uncommon as the primary site and exclusive manifestation of a malignant lymphoma (3–5). Retroperitoneal lymphomatous involvement may be secondary to continuous spread from abdominal lymph nodes (5). Radiologic imaging may permit first differential diagnostic triage, particularly with respect to RF (6), but this needs to be confirmed histologically (1). We present a case of a 54-year-old female patient with an unclear retroperitoneal mass not responsive to steroid treatment. Conclusion Initially, the retroperitoneal mass was highly suspicious for RF. The results of imaging can be useful, however, histology should always be taken into consideration when there is an uncertain clinical presentation. Without histology we would have missed a non-Hodgkin B-Cell Lymphoma in this case. Minimal invasive techniques like fine needle aspiration may be practical but can demonstrate false negative results. Keywords: retroperitoneal mass, retroperitoneal fibrosis, lymphoma , case report 2 2 Case Presentation A 54-year-old woman with a medical history of unprovoked lung and brain embolism underwent further investigation. She presented with paresthesia and disabling weakness of the right hand that had persisted for three days. Furthermore, she had been suffering from daily headache attacks for three weeks. At clinical presentation, the patient was afebrile, hypertensive (167/78 mmHg), normocard (HR 71 bpm), had a body weight of 90 kg (calculated BMI of 29.4 kg/2m²) and a normal oxygen saturation (95%) breathing ambient air. Examination of her lungs and heart were inconspicuous. Neurological findings showed paresis of the right finger movements (i.e. extension, flexion, spreading of the fingers, ab- and adduction, as well as opposition of the thumb). The remainder of the examination was normal. Routine laboratory testing revealed normal C-reactive protein (CRP) levels and blood sedimentation rate (BSR). Creatinine was mildly elevated (111 µmol/L (normal values < 95 µmol/L); calculated GFR [Cockcroft-Gault] 73 mL/min, reference value >70 mL/min). She had normal values for liver enzymes, protein electrophoresis, blood count, and urine analysis. Autoimmune serology was normal for antinuclear antibodies (ANA) and antineutrophil cytoplasmatic antibodies (ANCA), and there was no elevation of antiphospholipid antibodies. Testing for hereditary or acquired thrombophilia was negative. Magnetic resonance imaging 3 (MRI) of the head showed multiple cerebral infarctions, but the most striking finding was an isolated circular enhancement of the left internal carotid artery (ICA) suggesting vasculitis. Examinations of the heart (i.e. 24 h rhythmic analysis and ECG) were normal. Abdominal sonography demonstrated a shrunken unilateral kidney. Finally, MRI revealed extensive peri- aortal and left para-aortal soft tissue masses along the left iliacal interna artery, measuring 6.5 x 2.5 cm. Two computer tomography (CT)-guided fine needle aspirations (FNA) of the retroperitoneal mass were performed without any conclusive cytologic or molecular genetic results, neither for retroperitoneal fibrosis (Morbus Ormond; CD 38 and IgG4 negative) nor for malignancy. Initially assuming idiopathic retroperitoneal fibrosis, we started prednisone treatment that proved unsuccessful. Follow-up CT of the head 6 months later showed a decline in vessel caliber and vessel wall enhancement of the left ICA compared to initial findings, while CT follow-up of the abdomen 5 months later demonstrated progression of the retroperitoneal mass. Tissue samples from the left iliacal region obtained by diagnostic Da-Vinci laparoscopy were compatible with malignant B-cell lymphoma, both morphologically and immunohistochemically. Case Presentation To verify this finding, we performed immunoglobulin heavy-chain gene rearrangement by polymerase chain reaction (PCR) that yielded clonality in frameworks 2 and 3 (Fig. 3). Chemo – and Immunotherapy with R-Bendamustin was carried out for 6 months. Eight months after diagnosis, we observed a partial response with downsizing of the retroperitoneal mass in response to chemotherapy. The therapy was well tolerated by the patient who remained in good condition and regularly attended the planned follow-up visits. Currently, maintenance therapy with rituximab is planned for two additional years to optimize progression-free survival. NHL has a good prognosis with modern treatment, the estimated five years survival is considered to be over 85% percent (7). Discussion and Conclusion This case report illustrates the challenges in connection with the diagnosis of a retroperitoneal mass. Initially, we diagnosed the mass as RF, but subsequent histologic work-up confirmed the presence of B-cell lymphoma. Initial neurological presentation with stroke due to multiple cerebral vascular irregularities led to the assumption of vasculitis. Further diagnostic steps to confirm vasculitis consisted of angio-MRI of the entire aorta and proximal vessels, which revealed an unknown retroperitoneal mass interpreted as RF. Clinical onset of RF may be asymptomatic or may mimic lymphoproliferative diseases (8). The main symptoms of RF are compression of retroperitoneal organs (i.e. obstructive mega-ureter/hydronephrosis and renal failure) and other organs. Additional 4 symptoms include non-specific constitutional symptoms such as fatigue, anorexia, and weight loss (1). In our case, FNA failed to achieve a conclusive diagnosis. However, the MRI pattern appeared to be characteristic of RF. In line with other cases described in the literature, we noted a peri-aortic mass (Figures 1 and 2) with pelvic extension and associated ureteral encasing (9). Glucocorticoid treatment did not lead to remission. CT-follow-up of the abdomen 5 months later showed progression of the mass with no systemic inflammatory signs, which made us reconsider the diagnosis. Inflammatory markers such as erythrocyte sedimentation rate (ESR) and CRP are elevated in more than 50% of RF patients (10). In approximately one third of cases, RF is secondary to other causes (i.e. infection, autoimmune disease, medications, radiotherapy, surgery, malignant lymphoma, or other cancers found in about 8% of cases). Two thirds of RF cases are considered to be idiopathic (6). The IgG4-related disease (IgG4-RD) leading to RF is a fibro-inflammatory condition characterized by a dense lymphoplasmacytic infiltrate rich in IgG4-positive plasma cells and involving sclerosis including lymph nodes (6). In their case report, Sato et al. postulated a neoplastic potential of IgG4-producing cells leading to lymphoma (11), but our patient had no serological elevation of IgG4. Histologic findings in biopsies obtained laparoscopically demonstrated clonal rearrangement of immunoglobulin heavy chain genes (Figure 3: frameworks 2 and 3) thus confirming B-cell lymphoma. Retrospectively, embolism could have been interpreted as part of a paraneoplastic syndrome, and vasculitis could have been understood as secondary manifestation of extra-nodal lymphoma. Lymphoma predominantly occur in suprarenal locations with perirenal extension and tend to be associated with retroperitoneal lymph node enlargement, resulting in larger contrast-enhanced areas (9). These typical findings were not present in our patient. Discussion and Conclusion Further anterior displacement of the aorta and lateral displacement of the ureter seem to occur more often in malignancy than (idiopathic) RF (9). Early in our diagnostic work-up, FNA failed to rule out malignancy or RF. FNA has a limited role in the diagnosis of lymphoma because the samples obtained by FNA do not provide the anatomic details derived from larger, intact nodal specimens (3). Guo et al. compared 68 samples obtained by radiologically guided FNA with 36 biopsies of pelvic and retroperitoneal masses. The authors calculated a sensitivity of 90.2% and specificity of 100% for FNA (12). Another study in 167 FNA samples obtained by ultrasonic guidance found a sensitivity of 86% and specificity of 100% in terms of differentiating between malignant and benign lesions of the retroperitoneum (13). 5 After establishing the diagnosis of malignant B-cell lymphoma, the therapeutic regimen consisted of 6 cycles of R-Bendamustin to prevent compression of the ureter as well as further retroperitoneal spread. The patient is receiving rituximab maintenance therapy for 2 years. Interestingly, cerebral vascular lesions had normalized 6 months after start of prednisone treatment as seen in the follow-up MRI of the head. This may have been due to glucocorticoid treatment. In conclusion, lymphoma mimicked RF in terms of imaging characteristics and vasculitis in our patient. Retrospectively, we should have aimed for histologic evidence already initially and not only in the context of refractory disease. Diagnostic minimally invasive procedures to obtain biopsies of deep masses can be helpful because the volume of extracted tissue by FNA tends to be insufficient for further investigations (i.e. microscopic examination, flow cytometry, immunophenotyping, and molecular analysis) (3). immunophenotyping, and molecular analysis) (3). Funding Sources No specific funding was necessary for the realization of this publication. MN was responsible for writing the article. OK and SG contributed radiologic and histologic images and interpretation. TN supervised and reviewed the entire process. All authors read and approved the final manuscript. Availability of data and materials The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request. Consent for publication Written informed consent was obtained from the patient for publication of this case report and any accompanying images. A copy of the written consent is available for review by the Editor of this journal. Ethics approval and consent to participate The authors declare no ethical conflict. ANA: Antinuclear antibody 6 Competing interests The authors declare no competing interests. Acknowledgements Not applicable. 7 7 References 1. Wan N, Jiao Y. Non-Hodgkin lymphoma mimics retroperitoneal fibrosis. Case Rep. 2013; Doi: 10.1136/bcr-2013-010433. 2. Sassa N. Retroperitoneal tumors: Review of diagnosis and management. Int J Urol. 2020; Doi: 10.1111/iju.14361. 3. Chen LL, Kuriakose P, Hawley RC, Janakiraman N, Maeda K. Hematologic Malignancies With Primary Retroperitoneal Presentation: Clinicopathologic Study of 32 Cases. Arch Pathol Lab Med. 2005; Doi: 10.1043/1543-2165 4. Fulignati C. An uncommon clinical presentation of retroperitoneal non-Hodgkin lymphoma successfully treated with chemotherapy: A case report. World J Gastroenterol. 2005; Doi: 10.3748/wjg.v11.i20.3151. 5. CONSTANTIN A, TĂNASE AD. A Primary Retroperitoneal Diffuse Large B-Cell Lymphoma: A Challenging Diagnosis. Curr Health Sci J. 2018; Doi: 10.12865/CHSJ.44.04.12. 6. Alvarez Argote J, Bauer FA, Posteraro AF, Dasanu CA. Retroperitoneal fibrosis due to B-cell non-Hodgkin lymphoma: Responding to rituximab! J Oncol Pharm Pract. 2016; Doi: 10.1177/1078155214543279. 7. Siegel RL, Miller KD, Jemal A. Cancer statistics, 2017. CA Cancer J Clin. Januar 2017; Doi: 10.3322/caac.21387 8. Sica A, Casale B, Spada A, Teresa Di Dato M, Sagnelli C, Calogero A, u. a. Differential diagnosis: retroperitoneal fibrosis and oncological diseases. Open Med. 2019; Doi: 10.1515/med- 2020-0005. 9. Rosenkrantz AB, Spieler B, Seuss CR, Stifelman MD, Kim S. Utility of MRI Features for Differentiation of Retroperitoneal Fibrosis and Lymphoma. Am J Roentgenol. 2012; Doi: 10.2214/AJR.11.7822. 10. Urban ML, Palmisano A, Nicastro M, Corradi D, Buzio C, Vaglio A. Idiopathic and secondary forms of retroperitoneal fibrosis: A diagnostic approach. Rev Médecine Interne. 2015; Doi: 10.1016/j.revmed.2014.10.008. 11. Sato Y, Takata K, Ichimura K, Tanaka T, Morito T, Tamura M, u. a. IgG4-producing marginal zone B-cell lymphoma. Int J Hematol. 2008; Doi: 10.1007/s12185-008-0170-8. 12. Guo Z, Kurtycz DFI, De Las Casas LE, Hoerl HD. Radiologically guided percutaneous fine- needle aspiration biopsy of pelvic and retroperitoneal masses: A retrospective study of 68 cases. Diagn Cytopathol. 2001; Doi: 10.1002/dc.2000. 13. ISSN international centre: 0012-0472. http://www.issn.org (2006). Accessed 1946. 8 Figure legends Fig. 1: Axial T1 weighted fat suppressed image without contrast agent of the abdominal aorta with a retroperitoneal left sided periaortic mass (indicated by arrows). Fig. 2: Axial T1 weighted fat suppressed image with contrast agent enhancing periaortic mass (indicated by arrows) Fig. 3: Clonal rearrangement of the immunoglobulin heavy-chain gene locus (IGH) in framework II (FR2) and III (FR 3) next to a polyclonal rearrangement pattern in framework I (FR 1) revealed by Multiplex-PCR (IdentiClone IGH Gene Clonality Assay) and fragment analysis. 9 9 Figures Figures Figure 3 Clonal rearrangement of the immunoglobulin heavy-chain gene locus (IGH) in framework II (FR2) and III (FR 3) next to a polyclonal rearrangement pattern in framework I (FR 1) revealed by Multiplex-PCR (IdentiClone IGH Gene Clonality Assay) and fragment analysis. Clonal rearrangement of the immunoglobulin heavy-chain gene locus (IGH) in framework II (FR2) and III (FR 3) next to a polyclonal rearrangement pattern in framework I (FR 1) revealed by Multiplex-PCR (IdentiClone IGH Gene Clonality Assay) and fragment analysis. ChecklistCARE.pdf Figure 1 Axial T1 weighted fat suppressed image without contrast agent of the abdominal aorta with a retroperitoneal left sided periaortic mass (indicated by arrows). Figure 2 Axial T1 weighted fat suppressed image with contrast agent enhancing periaortic mass (indicated by arrows) Figure 3 Clonal rearrangement of the immunoglobulin heavy-chain gene locus (IGH) in framework II (FR2) and III (FR 3) next to a polyclonal rearrangement pattern in framework I (FR 1) revealed by Multiplex-PCR (IdentiClone IGH Gene Clonality Assay) and fragment analysis. S l Fil Supplementary Files This is a list of supplementary ¦les associated with this preprint. Click to download.
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Low-Income Students in Higher Education: Undermatching Predicts Decreased Satisfaction toward the Final Stage in College
Journal of youth and adolescence
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* Marjolein Muskens m.muskens@maastrichtuniversity.nl Abstract It is undesirable when students attend institutions that are less selective than their academic credentials would permit (i.e., undermatching) because of the long-term consequences for their job opportunities and wages, in particular for students from low-socioeconomic (SES) backgrounds. Undermatching may also affect students’ satisfaction during college. Research from a life course perspective shows that subjective experiences during college may have long-term impact on adolescents’ development. However, little is known about the relation between undermatching and students’ subjective experiences during their years in college, and about whether this relation is moderated by SES. From an academic misalignment perspective, undermatching may lead to less satisfaction because undermatched students are not maximizing their potential. However, from a social misalignment perspective, experiences of social mismatch when low-SES students enter the most selective institutions are well documented, and such mismatch may be less pronounced in less selective institutions. Consequently, there may be a positive relation between undermatching and satisfaction with the social environment for low- SES students. The current study tested these relations by using propensity score matching (PSM) to analyse the association between undermatching, SES, and satisfaction among 21,452 respondents (67% female) among 1st, 2nd, 3th, and 4th year college students from a cohort study among students in the Netherlands (Dutch Student Monitor), all of whom were eligible for the most selective institutions. The results indicated a negative relation between undermatching and satisfaction with the social and academic environment, both for low- and high-SES students. The negative relation between undermatching and both forms of satisfaction increases toward the last year in college, especially for low-SES students. This lowered satisfaction in the final stage in higher education implies that the negative consequences of undermatching become more pronounced after students have become more integrated in their colleges. These findings have important implications for the understanding about undermatching in relation to students’ development and for the formulation of policies and programs for promoting social mobility. Keywords Socioeconomic status ●Students ●Undermatching ●Social mobility ●Satisfaction ●Propensity score matching Keywords Socioeconomic status ●Students ●Undermatching ●Social mobility ●Satisfaction ●P 2 Behavioural Science Institute, Radboud University, Montessorilaan 3, PO Box 9104, 6500 HE Nijmegen, The Netherlands Journal of Youth and Adolescence (2019) 48:1296–1310 https://doi.org/10.1007/s10964-019-01022-1 Journal of Youth and Adolescence (2019) 48:1296–1310 https://doi.org/10.1007/s10964-019-01022-1 EMPIRICAL RESEARCH Low-Income Students in Higher Education: Undermatching Predicts Decreased Satisfaction toward the Final Stage in College Marjolein Muskens 1 ●Willem E. Frankenhuis2 ●Lex Borghans1 Received: 15 March 2019 / Accepted: 3 April 2019 / Published online: 19 April 2019 © The Author(s) 2019 1 School of Business and Economics, Maastricht University, Tongersestraat 53, 6211 LM Maastricht, The Netherlands * Marjolein Muskens m.muskens@maastrichtuniversity.nl 1 School of Business and Economics, Maastricht University, Tongersestraat 53, 6211 LM Maastricht, The Netherlands 2 Behavioural Science Institute, Radboud University, Montessorilaan 3, PO Box 9104, 6500 HE Nijmegen, The Netherlands Introduction (Mayhew et al. 2016). Because of these economic benefits of college completion in selective institutions, under- matching, when students attend institutions that are less selective than their academic achievements would enable, is an undesirable outcome (Tiboris 2014). In addition, from an academic misalignment perspective, undermatching leads to less positive college experiences than matching. Because of the less rigorous study program in less selective institutions, high-achieving undermatched students would be less chal- lenged to develop their full potential (Hoxby and Turner 2013). This mismatch may lead to less academic integra- tion, contributing to the risk of dropping out of college (Bowen et al. 2009). The recurrent finding that under- matching is negatively related to college completion (Ovink et al. 2018) supports this hypothesis. Importantly, not all (Mayhew et al. 2016). Because of these economic benefits of college completion in selective institutions, under- matching, when students attend institutions that are less selective than their academic achievements would enable, is an undesirable outcome (Tiboris 2014). In addition, from an academic misalignment perspective, undermatching leads to less positive college experiences than matching. Because of the less rigorous study program in less selective institutions, high-achieving undermatched students would be less chal- lenged to develop their full potential (Hoxby and Turner 2013). This mismatch may lead to less academic integra- tion, contributing to the risk of dropping out of college (Bowen et al. 2009). The recurrent finding that under- matching is negatively related to college completion (Ovink et al. 2018) supports this hypothesis. Importantly, not all Graduating from the most selective institutions is related to more career opportunities and higher wages in the long term compared to graduating from less selective institutions Journal of Youth and Adolescence (2019) 48:1296–1310 1297 groups are equally likely to undermatch. Social scientists and policymakers are particularly worried about the high prevalence of undermatching among students from low- socioeconomic (low-SES) backgrounds (Howell and Pender 2016), because this leads to reinforcement of social and economic inequality (Deutschlander 2017). aspects of college, such as interactions with fellow students and teachers, whereas the academic environment refers to intellectual aspects of college, such as the content and structure of the study program. Indeed, decades of research testing Tinto’s model in different college systems and environments, has shown that when examining students’ integration, it is valuable to distinguish between the social and academic environment (Aljohani 2016). Socioeconomic Status An extensive body of research has shown that students’ SES is one of the strongest correlates of academic performance (e.g., Sirin 2005). In addition, the size of the relationship between SES and educational attainment increases by each school level, suggesting that the gap between low- and high-SES students in academic achievement expands through students’ lives (Sirin 2005). The relation between SES and educational achievement is related to several fac- tors, such as differences in cognitive development related to harmful effects of poverty (Mullainathan and Sharif 2013), low-SES students’ higher chance to encounter lower edu- cational expectations from their parents (Davis-Kean 2005), and their teachers (Jussim et al. 1996), and a higher like- lihood of being placed in low-resource schools compared to high-SES students (Lee and Burkam 2002). Moreover, researchers have also suggested that there may be a mis- match between the social-cognitive skills that children from disadvantaged circumstances develop in interaction with their home environments, and social-cognitive skills demanded in school-environments (Ellis et al. 2017). For example, in higher education, a cultural mismatch with regard to norms in interacting with others seems to fuel social-class disparities (Stephens et al. 2018). Student integration is a developmental process, and classical research on students’ integration suggests that students go through several stages after their transitions into college. First, there is the stage of separation when students start to detach themselves from the norms and values of their previous communities, such as family and high school. Second, students go through the phase of transition, when they adapt new norms and value from their college. Third, in the phase of incorporation, students are successfully integrating in the new community (Aljohani 2016). There- fore, in studying student experiences, it is important to incorporate a time perspective. Introduction Research from a life course perspective has shown that early circumstances and experiences can have cumulative and enduring consequences for life experiences in later developmental stages (Yoshioka and Noguchi 2009). More specifically, adolescents’ subjective experiences during their years in college may have far-reaching consequences for their development toward adulthood, for example for academic achievement and psychosocial well-being (Wickrama et al. 2016). However, little is known about the subjective experiences of students who undermatch. The present study will investigate the relationship between undermatching, socioeconomic status, and students’ sub- jective experiences. Notably, theories about cultural capital predict difficul- ties with integration in the social environment when low- SES youth enter the most selective institutions, and the existence of these social barriers is well documented (Jury et al. 2017). Differences in cultural capital and codes between low- and high-SES students (Jæger 2009), sig- nalled by teachers and fellow-students, might lead to social exclusion of low-SES students (Walpole 2003). This experience of not fitting in can lead to lower levels of satisfaction with the social environment in the most selec- tive tracks (Jury et al. 2017). This mismatch may be less present in less selective institutions because of the presence of more low-SES students (Bastedo and Jaquette 2011), and, as a consequence, cultural codes that may match better with low-SES students’ backgrounds (Walpole 2003). At the same time, it is also suggested that undermatching leads to a misalignment between students’ academic capacities and demands from the educational program. This mis- alignment may lead to less satisfaction with academic aspects in college (Hoxby and Turner 2013), and difficulties with integration in the academic environment (Aljohani 2016). By contrast, in the most selective tracks, highly qualified students may be more likely to experience an academic match (Hoxby and Avery 2013). Current Study The predominant view is that undermatching is undesirable and has negative long-term consequences for wages and job status. Subjective experiences during college are also important because of their relation with college completion and, from a life course development perspective, because these experiences accumulate and may have enduring con- sequences during adulthood. However, little is known about the relation between undermatching and subjective experi- ences of students during their years in higher education, and about the possibility that students’ SES plays a moderating role in this relation. Using a representative sample of 22,521 adolescents, the current study attempts to enhance knowl- edge about these relations and their development over the course of students’ time in higher education. From an aca- demic misalignment perspective, undermatching leads to less satisfaction because of the mismatch between students’ high capacity and the less rigorous educational program in less selective institutions. However, from a social mis- alignment perspective, undermatching may have differential effects for low- and high-SES students, predicting more satisfaction for students with a low-SES background because of less experiences of social mismatch in the less selective institutions than in the highly selective institutions. In addition, the role of students’ time spent in college (i.e., 1st, 2nd, 3th and 4th year) in these relationships is explored. The main differences the current study takes advantage of are differences in admission procedures and institutions selectivity. First, there are differences with regard to admission procedures to higher education. In the U.S, institutions for higher education determine their own admission standards, and therefore, it depends on the spe- cific higher education institution who is admitted and who is not. Students’ eligibility is determined in the last stage of high school, with performance on standardized tests (i.e., SAT, ACT), and by assessing their academic and extra- curricular performance. In the Netherlands, as in many other European countries, students’ eligibility for higher educa- tion is determined by students’ track in secondary educa- tion, and all institutions of higher education follow these standards. In the Netherlands, the eligibility for the most selective institutions is determined by having completed the highest secondary track (i.e., VWO), whereas participating in a lower track (i.e., HAVO) leads to eligibility to less selective institutions. Therefore, in the Netherlands, under- matching is a consequence of students’ choice to attend a less selective institution after completing the highest sec- ondary track. Student experiences Research on the phenomenon of undermatching has been conducted mainly in the educational context of the U.S. To determine undermatching, researchers have to define insti- tutions’ selectivity levels and, in addition, they have to determine which students are eligible to gain admission to these levels. These distinctions are in practice gradual. Theoretical models of student experiences in college dis- tinguish between integration in the social and academic system. In the classical work of Tinto (1975), integration in these two systems was defined as primary condition for student success. The social environment refers to social Journal of Youth and Adolescence (2019) 48:1296–1310 1298 Because researchers have used different approaches in defining both elements, estimating undermatching has lea- ded to different results, such as a wide range of undermatch rates, and conflicting findings for underrepresented students (Rodriguez 2015). By focussing on undermatching in the Netherlands, these issues are circumvented, since the Dutch education system has a clear distinction between two levels of higher education, with almost no variation in quality within each level, and there are clear rules who can attend the higher level. On other aspects, the Dutch situation is very similar to higher education in the U.S. and in Europe. Both in the U.S. and in Europe, high school (or secondary education) is followed by postsecondary (or tertiary) edu- cation, generally during late adolescence. The contexts are similar regarding academic degrees that can be attained, and educational and professional careers during and after higher education. In addition, patterns of educational inequality, such as the tendency among low-SES students to under- match (Dutch Inspectorate of Education 2018), are com- parable between the U.S and the European context. empirically estimated, leading to discussion about the accuracy of the estimation of undermatching (Smith et al. 2013). By contrast, in the Dutch context, both students’ admissibility and institutions’ selectivity are fully trans- parent and clearly defined, and therefore undermatching is easy to determine. Respondents are determined as ‘mat- ched’ when they are eligible for the most selective institu- tions and subsequently enrolled in an institution that can be characterized as ‘most selective’. Respondents are deter- mined as ‘undermatched’ when they are eligible for the most selective institutions and subsequently have chosen to enrol in an institution that is less selective. Current Study The prevalence of undermatching among students with the eligibility to attend the most selective institutions ranges between 10 and 13% (Van den Broek et al. 2018). Participants and Data Set Second, there is an important difference between the U.S. context and the European context regarding higher educa- tion institutions’ selectivity. Whereas in the U.S. context, selectivity is often seen as a continuum (Roderick et al. 2006), in the Dutch context there are only two types of higher education institutions: most selective institutions and less selective institutions. In the U.S. context, both students’ admissibility and institutions’ selectivity have to be Research questions, inclusion criteria, sample size, and constructs of this study are preregistered (Frankenhuis & Nettle, 2018) at Open Science Framework (https://osf.io/ 4x5p8/). During the review procedure, this study has deviated from the preregistration on several aspects, reported in an addendum added to the preregistration Journal of Youth and Adolescence (2019) 48:1296–1310 1299 Match and Undermatch (https://osf.io/crhjx/). This section reports how the sample size was determined, all data exclusions, and all measures in the study. The treatment variable is undermatching. In the Nether- lands, students are either eligible for the most selective institutions of higher education (i.e., they attained a diploma in the highest level in high school) or not (i.e., they have not attained a diploma in the highest level in high school1). In addition, there are two types of institutions in higher edu- cation: most selective institutions (i.e., students are only admitted when they have attained a diploma in the highest level of high school2), and less selective institutions (i.e., a diploma from the highest level of secondary education (i.e., VWO) is not required, a diploma in a lower level of sec- ondary education (i.e., HAVO) gives eligibility). Respon- dents were determined as ‘matched’ when they are eligible for the most selective institutions in higher education and subsequently choose to attend an institution that can be characterized as ‘most selective’. Respondents are deter- mined as ‘undermatched’ when they are eligible for the most selective institutions in higher education and subse- quently have chosen to attend an institution that is less selective. Data for this study come from the Dutch Student Monitor, a large-scale survey of youth’s experiences during their time in higher education in the Netherlands. Participants were selected with a random sample procedure from all higher education institutions in the Netherlands. The dataset used for this study contains data from 3 waves (from 2013 to 2015; N = 58,177). To minimize pre-existing differences in skills and cognitive abilities, only respondents were included who are eligible for the most selective institutions (i.e., about 45% of this sample), who are enrolled in higher education (i.e., university or higher professional education) in a full- time educational program, and who are between 17 and 25 years old (M = 21.58, SD = 1.77). Therefore, the final sample includes 21,452 students who are all eligible for the most selective institutions. The majority (87%) chose to enrol in the most selective institutions (i.e., matched stu- dents), and a minority (13%) chose to enrol in less selective institutions (i.e., undermatched students). 1 Although the vast majority of students in the most selective insti- tutions in higher education are admitted after attainment of a diploma in the highest level of secondary education, a bachelors’ degree attained in a less selective institution in higher education can also give eligibility to the most selective institutions in higher education (applies to less than 4% off all students in the most selective institutions) (van den Broek et al., 2018). 2 2 Apart from some exceptions regarding specific majors, such as dentistry and medicine, selective institutions hold no additional requirements. 1 Although the vast majority of students in the most selective insti- tutions in higher education are admitted after attainment of a diploma in the highest level of secondary education, a bachelors’ degree attained in a less selective institution in higher education can also give eligibility to the most selective institutions in higher education (applies to less than 4% off all students in the most selective institutions) (van den Broek et al., 2018). 2 Apart from some exceptions regarding specific majors, such as dentistry and medicine, selective institutions hold no additional requirements. Satisfaction SES was measured in two ways. Because various compo- nents of SES could work through different processes when affecting health and psychosocial outcomes, using more than one single measure of SES is important. Following recommendations by the APA task force Socioeconomic Status (2007), an objective and a subjective measure of SES was employed. Research has shown that subjective social status is correlated with well-established measures of SES, but also that it may capture unique aspects socioeconomic circumstances that predict outcomes related to well-being often missed by objective indicators of SES (Bradshaw et al. 2017). This study thus included: (1) an objective measure based on parental educational level with two levels: (1, Low-SES), both parents have not obtained a diploma in higher education, (0, High-SES), one or both parents obtained a diploma in higher education, and (2) a subjective measure (Singh-Manoux et al. 2003) based on a single item regarding students’ view of their parents’ social class (“Some people belong to a higher social class, others The outcome measure of interest is student satisfaction. Because of the theoretical model for student integration that this study builds on (Davidson and Wilson 2013), two scales for satisfaction were applied: (1) satisfaction with the social environment, and (2) satisfaction with the academic environment. In the Student Monitor survey, participants responded to 20 single items on satisfaction. From these items, drawing on this theoretical model, three items were selected, that reflect their experiences with the social environment, and three items were selected that capture their experiences with the academic environment. Students responded using a 5-point Likert scale (1 = very dissatisfied, 5 = very satisfied) assessing how satisfied they are with several aspects regarding their experiences in college. The scale for social satisfaction was con- structed from the items regarding satisfaction with: (1) the general atmosphere, (2) students’ attitude toward fellow students, and (3) teachers’ attitude toward students. The scale for academic satisfaction was constructed from the items regarding satisfaction with: (1) the content of the programme, (2) general skills learned in the programme, and (3) the degree to which the educational program is academically challenging. The two scales were reidenti- fied by a joint factor analysis, explaining 65% of the variance. Internal consistencies (Cronbach’s Alpha) were .72 for both scales. Motivation Before College To control for the potential confounding effects of differ- ences in students’ motivation before their transition to higher education, respondents were asked how motivated they were before going to college to attain a degree in higher education on a 5-point Likert scale (1 = not at all motivated, 5 = very motivated). Grades In Dutch education, the grading system consists of marks from 1 (very poor) to 10 (outstanding). The pass mark for a single course is ‘6’. Students’ average grades were mea- sured by asking them to report their average grade during their last year in high school using a single-item question. Self-reported grades are reasonably good reflections of actual grades, especially among high-performers, and are strong predictors of future grade points (Kuncel et al. 2005). Additional Controls Other covariates in the models include indicators for gen- der, age, immigrant status (i.e., at least one parent was born abroad) (with non-immigrant status as reference category), the language spoken at home with parents (with Dutch as reference category), students’ disability (measured with a question about suffering from a disability or chronicle dis- ease (yes = 1, no = 0), and college major. Descriptive sta- tistics for all variables are displayed in Table 1. Satisfaction Journal of Youth and Adolescence (2019) 48:1296–1310 1300 treatment group (in the current study, students who are undermatched) and a comparison group (in the current study, students who are matched), and compares these groups on the outcome measure of interest (in the current study, student satisfaction). PSM creates two equal groups by matching them on several covariates that may affect the propensity to undermatch and student satisfaction (Rosen- baum and Rubin 1983). More specifically, PSM estimates a logit model predicting the treatment (i.e., undermatching) with covariates. In this study, the propensity to undermatch was first estimated with a logit model (conducted with R essentials for SPSS 24) that predicts undermatch with the covariates described earlier (except for the covariate college major, because experiences with college major occurred after being matched or undermatched). Each respondent was assigned a propensity to undermatch, varying from propensity scores close to 0 (very low chance to under- match) to 1 (very high chance to undermatch). Second, respondents from the treatment group (i.e., undermatched students) were matched with respondents from the com- parison group (i.e., matched students) using the propensity scores. In the analyses presented, the two-to-one nearest- neighbour matching technique was applied, without repla- cement and with a conservative 0.02 caliper level. The two- to-one nearest-neighbour matching technique was the most suitable approach because there are more untreated (mat- ched) respondents (N = 18,626) than treated (under- matched) respondents (N = 2,826) in the dataset, and the 2:1 ratio is found to improve precision without a com- mensurate increase in bias (Austin 2010). (However, esti- mating models with the specification one-to-one nearest neighbour matching appeared to show the same results as the two-to-one nearest neighbour matching, results not shown). Each undermatched student was matched to a maximum of two matched student based on their propensity score, and the difference between these two respondents was not larger than 0.02. This resulted in 2826 students in the treatment and 5507 respondents in the comparison group. to a lower one. Considering your own social background, where on the scale would you place your parents/care- givers?”). The response scale ranged from 1, lower social class, to 10, higher social class. Analytic Plan After following the PSM procedure, the relation between undermatching, SES, and satisfaction was tested with linear regression models, applying satisfaction (with the social and academic environment, separate analyses) as dependent variable, undermatching, SES, and the interaction under- matching × SES as predictors, and college major as cov- ariate (eight dummy variables). In addition, in order to assess the development of these relationships during the years in college, the predictor year, and the interaction undermatching × SES × year (and all relevant two-way interactions) were added to the model. Finally, the simple mean differences with regard to year, SES and under- matching were evaluated. The presentation of the results is focuses on results of interactions in linear regression models In testing the relation between undermatching in student satisfaction, selection effects might play a role. Students who choose to undermatch may differ from students who choose to go the most selective institutions on several characteristics. For example, it is possible that under- matched students, compared to matched students, are likely to be less motivated to attain a degree before their entrance to college. In this way, matched and undermatched students differ on salient characteristics that spuriously inflate the effect that undermatching would have on the development of satisfaction when using traditional methodological tech- niques. For that reason, propensity score matching (PMS; Thoemmes and Kim (2011)) was applied. PSM creates a Journal of Youth and Adolescence (2019) 48:1296–1310 Table 1 Descriptive statistics among study variables 1 2 3 4 5 6 7 8 9 10 11 1 Satisfaction (social) 2 Satisfaction (academic) environment 0.47* 3 Undermatched −0.07* −0.10* 4 SES def. 1 −0.03* −0.03* 0.08* 5 SES def. Analytic Plan 2 0.05* 0.06* −0.04* −0.41* 6 Male 0.02* 0.01 −0.05* 0.01 −0.03* 7 Age −0.05* −0.04* 0.00 0.02* 0.01 0.07* 8 Immigrant status −0.07* −0.02* −0.03* 0.05* −0.11* 0.02* 0.03* 9 Home language Dutch 0.06* 0.02* 0.01* −0.05* 0.10* −0.01 −0.03* −0.35* 10 No disability/disease 0.03* 0.02* −0.02* −0.01 0.05* 0.07* −0.03* 0.00 0.00 11 Grade in high school secondary education 0.08* 0.08* −0.22* −0.12* 0.08* 0.02* 0.00 −0.02* −0.03* 0.05* 12 Motivation before college 0.16* 0.17* 0.04* 0.00 0.03* −0.09* −0.03* −0.01 0.00 −0.01 0.09* 13 Years in higher education −0.01 −0.04* −0.07* 0.01 0.01* 0.03* 0.78* −0.02* 0.00 0.03* 0.12* 14 Economics −0.06* −0.05* 0.12* 0.03* 0.01 0.08* −0.05 0.03* −0.04* 0.04* −0.02* 15 Education 0.01 −0.02* 0.27* 0.01 0.00 −0.05* 0.00* −0.02* 0.01 −0.01* −0.06* 16 Agriculture 0.11* 0.04* −0.05* −0.01* 0.00 −0.03* −0.02* −0.04* 0.01* −0.02* −0.04* 17 Nature 0.06* 0.04* −0.12* −0.03* 0.00 0.08* 0.00 0.02* 0.00 −0.01* 0.09* 18 Science 0.01 0.03* 0.02* −0.01 0.00 0.28* 0.01 −0.02* 0.02* 0.01* 0.04* 19 Health −0.05* 0.04* 0.01* −0.02* 0.05* −0.15* 0.06* 0.02* 0.00 0.02* 0.07* 20 Law −0.06* −0.02* −0.07* 0.03* 0.00* −0.02* −0.01 0.03* −0.03* −0.01* −0.03* 21 Behavior −0.04* −0.08* −0.03* 0.02* −0.03* −0.14* −0.01 0.00 0.02* −0.01* −0.14* 22 Language 0.05* 0.01 −0.03* 0.00 −0.03 −0.07* 0.01 −0.03* 0.00 −0.04* 0.03* Mean or Proportion 4.10 3.85 0.13 0.31 6.78 0.33 21.58 0.06 0.92 0.72 7.21 SD 0.61 0.64 0.34 0.46 1.50 0.47 1.77 0.23 0.27 0.45 0.64 Minimum 1 1 0 0 1 0 17 −1 0 0 5.51 Maximum 5 5 1 1 10 1 25 1 1 1 10 12 13 14 15 16 17 18 19 20 21 22 1 Satisfaction (social) 2 Satisfaction (academic) environment 3 Undermatched 4 SES def. 1 5 SES def. Analytic Plan 2 6 Male 7 Age 8 Immigrant status 9 Home language Dutch 10 No disability/disease 11 Grade in high school secondary education 12 Motivation before college 13 Years in higher education −0.03* 14 Economics −0.04* −0.04* 15 Education 0.03* −0.01 0.00 16 Agriculture −0.01 −0.01 0.00 0.00 17 Nature −0.02* 0.01 0.00 0.00 0.00 18 Science −0.03* 0.01 0.00 0.00 0.00 0.00 19 Health 0.07* 0.06* 0.00 0.00 0.00 0.00 0.00 20 Law −0.03* −0.02* 0.00 0.00 0.00 0.00 0.00 0.00 21 Behavior −0.01 −0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 Language 0.04* −0.02* 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 Mean or Proportion 4.29 2.61 0.14 0.02 0.06 0.11 0.15 0.19 0.05 0.16 0.11 SD 0.78 1.16 0.34 0.13 0.24 0.32 0.36 0.40 0.22 0.37 0.32 Minimum 1 1 0 0 0 0 0 0 0 0 0 Maximum 5 4 1 1 1 1 1 1 1 1 1 N = 21,452 *p < 0.05 Journal of Youth and Adolescence (2019) 48:1296–1310 1301 1301 Table 1 Descriptive statistics among study variables 1 2 3 4 5 6 7 8 9 10 11 1 Satisfaction (social) 2 Satisfaction (academic) environment 0.47* 3 Undermatched −0.07* −0.10* 4 SES def. 1 −0.03* −0.03* 0.08* 5 SES def. Results Because the PSM procedure generated balance between undermatched and matched students with regard to covari- ates, next, the matched dataset was appropriate for exam- ining the interaction between undermatching and SES in relation to student satisfaction. The results of the final analyses, with satisfaction as outcome measure, under- matching, SES, and the interaction undermatching × SES as predictor, and college major as covariates, are shown in Table 4. The results show no interaction between under- matching and SES. Moreover, undermatching is related to less satisfaction with the academic and social environment. These relations are significant with modest effect sizes. These results indicate that regardless of SES, under- matching is related to lower satisfaction during college. These results show no evidence suggesting that under- matching may take along benefits in terms of more satis- faction for students with a low-SES background. Descriptive statistics and correlations among study vari- ables are shown in Table 1. The analysis began by estimating a logit model by pre- dicting undermatching with nine covariates. Most of the covariates were statistically significant predictors of undermatching (see Table 2). Overall, five of the covariates reached statistical sig- nificance (p < 0.01, two-tailed tests). Covariates that were not a significant predictor of undermatching, such as age, were still included in the final model to create the pro- pensity score. Next, a two-to-one nearest-neighbour matching techni- que was conducted without replacement and with a 0.02 caliper level (i.e., matched neighbours differ no more than 0.02 standard deviations of the logit of the estimated pro- pensity score). Results indicate that the matching was suc- cessful, with all covariates having a standardized mean difference smaller than 0.25 after matching. In addition, the Relative Multivariate Imbalance test showed a lower L1 after matching (.670) than before matching (.732) (Iacus et al. 2011), indicating that the matching procedure gener- ated balance. Table 2 Logistic regression estimates for propensity score models Analytic Plan 2 0.05* 0.06* −0.04* −0.41* 6 Male 0.02* 0.01 −0.05* 0.01 −0.03* 7 Age −0.05* −0.04* 0.00 0.02* 0.01 0.07* 8 Immigrant status −0.07* −0.02* −0.03* 0.05* −0.11* 0.02* 0.03* 9 Home language Dutch 0.06* 0.02* 0.01* −0.05* 0.10* −0.01 −0.03* −0.35* 10 No disability/disease 0.03* 0.02* −0.02* −0.01 0.05* 0.07* −0.03* 0.00 0.00 11 Grade in high school secondary education 0.08* 0.08* −0.22* −0.12* 0.08* 0.02* 0.00 −0.02* −0.03* 0.05* 12 Motivation before college 0.16* 0.17* 0.04* 0.00 0.03* −0.09* −0.03* −0.01 0.00 −0.01 0.09* 13 Years in higher education −0.01 −0.04* −0.07* 0.01 0.01* 0.03* 0.78* −0.02* 0.00 0.03* 0.12* 14 Economics −0.06* −0.05* 0.12* 0.03* 0.01 0.08* −0.05 0.03* −0.04* 0.04* −0.02* 15 Education 0.01 −0.02* 0.27* 0.01 0.00 −0.05* 0.00* −0.02* 0.01 −0.01* −0.06* 16 Agriculture 0.11* 0.04* −0.05* −0.01* 0.00 −0.03* −0.02* −0.04* 0.01* −0.02* −0.04* 17 Nature 0.06* 0.04* −0.12* −0.03* 0.00 0.08* 0.00 0.02* 0.00 −0.01* 0.09* 18 Science 0.01 0.03* 0.02* −0.01 0.00 0.28* 0.01 −0.02* 0.02* 0.01* 0.04* 19 Health −0.05* 0.04* 0.01* −0.02* 0.05* −0.15* 0.06* 0.02* 0.00 0.02* 0.07* 20 Law −0.06* −0.02* −0.07* 0.03* 0.00* −0.02* −0.01 0.03* −0.03* −0.01* −0.03* 21 Behavior −0.04* −0.08* −0.03* 0.02* −0.03* −0.14* −0.01 0.00 0.02* −0.01* −0.14* 22 Language 0.05* 0.01 −0.03* 0.00 −0.03 −0.07* 0.01 −0.03* 0.00 −0.04* 0.03* Mean or Proportion 4.10 3.85 0.13 0.31 6.78 0.33 21.58 0.06 0.92 0.72 7.21 SD 0.61 0.64 0.34 0.46 1.50 0.47 1.77 0.23 0.27 0.45 0.64 Minimum 1 1 0 0 1 0 17 −1 0 0 5.51 Maximum 5 5 1 1 10 1 25 1 1 1 10 12 13 14 15 16 17 18 19 20 21 22 1 Satisfaction (social) Journal of Youth and Adolescence (2019) 48:1296–1310 1302 (conducted with software package SPSS 24), as these assess the research questions. hand columns (i.e., the matched sample), the results are shown of t-tests after matching on the propensity score. The results show that matching was indeed successful, because it eliminated all significant differences on covariates between matched and undermatched students. Undermatching, SES, and student satisfaction during four years in higher education In order to test whether the relation between undermatching and satisfaction develops differently among low- and high- SES students during higher education, the interaction SES × undermatching × year (in addition to all relevant two- way interactions) was added to the models presented in Table 2. Results indicate a three-way interaction between SES, undermatching, and year 4 (with year 1 as reference category) (see Table 5) with regard to satisfaction with the academic environment, but not regarding satisfaction with the social environment. In order to interpret this significant interaction, exploratory analyses for each separate year in Table 3 shows the results of the pre- and postmatching t- tests, examining differences between undermatched and matched students on the covariates. In the left-hand col- umns (i.e., the unmatched sample), can be seen that mat- ched and undermatched students differ significantly on six out of nine covariates. These significant differences show that the results may be confounded when analysing the relationship between undermatching and students’ satis- faction, and that PSM may address this issue. In the right- Variable Coefficient (Exp B) Standard error p-Value SES def. 1 (1 = first generation) 1.42** 0.05 <0.000 SES def. 2 (subjective social class) 0.99 0.02 0.565 Gender (1 = male) 0.74** 0.05 <0.000 Age 1.02 0.01 0.156 Immigrant status (1 = immigrant status) 0.54** 0.11 <0.000 Home language (1 = Dutch) 0.96 0.09 0.668 Disability or chronicle disease (1 = no) 0.99 0.05 0.775 Average grade high school 0.19** 0.62 <0.000 Motivation before entrance to higher education 1.24** 0.03 <0.000 Constant 919.70** 2.20 <0.000 N = 21,452 *p < 0.05, **p < 0.01 Table 2 Logistic regression estimates for propensity score models Journal of Youth and Adolescence (2019) 48:1296–1310 1303 Table 4 Estimated coefficients (Beta) predicting student satisfaction after propensity score matching Outcome: Satisfaction with the social environment Outcome: Satisfaction with the academic environment β SE β SE Undermatching (1 = undermatched) −0.12** 0.02 −0.18** 0.02 Low-SES (1 = low) −0.01 0.02 −0.03 0.02 Interaction: Low-SES × Undermatching 0.01 0.03 0.03 0.03 Constant 3.98** 0.02 3.78** 0.02 R-sq 0.03 0.03 N 8333 8333 Standardized coefficients. Undermatching, SES, and student satisfaction during four years in higher education Both models control for college major (8 dummies, results not shown) SES socioeconomic status *p < 0.05, **p < 0.01 Table 3 Achieving balance among undermatched and matched students: Pre- and Post-test matching T-tests using 2-1 nearest neighbour matching Unmatched sample Matched sample Control (Matched) Treatment (Undermatched) t-value Control (Matched) Treatment (Undermatched) t-value SES def. 2 (1 = first generation) 0.29 0.41 12.08** 0.39 0.41 1.62 SES def. 2 (subjective social class) 6.80 6.65 −5.27** 6.62 6.65 0.69 Gender (1 = male) 0.34 0.27 −7.48** 0.28 0.27 −1.01 Age 21.58 21.59 0.10 21.58 21.59 0.19 Immigrant status (1 = immigrant status) 0.06 0.04 −4.53** 0.04 0.04 −0.70 Home language (1 = Dutch) 0.92 0.93 1.73 0.92 0.93 0.68 Disability or chronicle disease (1 = no) 0.73 0.70 −2.56* 0.71 0.70 −0.51 Average grade high school 7.26 6.84 −33.55** 6.87 6.85 −1.94 Motivation before entrance to higher education 4.28 4.37 5.76** 4.36 4.37 0.54 N 18626 2826 5507 2826 *p < 0.05, **p < 0.01 higher education (year 1, 2, 3, and 4) were conducted, assessing simple mean comparisons. These analyses, shown in Fig. 1, reveal that this significant interaction indicates that among matched students, low- and high-SES students are equally satisfied by the fourth year of college. On the contrary, among undermatched students, the low-SES stu- dents become less satisfied than their high-SES fellow students by the fourth year of college. higher education (year 1, 2, 3, and 4) were conducted, assessing simple mean comparisons. These analyses, shown in Fig. 1, reveal that this significant interaction indicates that among matched students, low- and high-SES students are equally satisfied by the fourth year of college. On the contrary, among undermatched students, the low-SES stu- dents become less satisfied than their high-SES fellow students by the fourth year of college. environment than matched students on a 5-point scale (results shown in Figs. 1 and 2). Results from all models show the same pattern when applying the alternative definition of SES (subjective SES); therefore, these results are not shown. Fig. 1 Satisfaction with the academic environment (scale 1–5) during the years in higher education among matched- and undermatched low-and high- SES students (objective SES, cross-sectional data) after propensity score matching, N = 8,333 Table 5 Estimated coefficients (Beta) predicting student satisfaction after propensity score matching: Interaction between SES, Undermatch, and Year Fig. 2 Satisfaction with the social environment (scale 1–5) during the years in higher education among matched- and undermatched low-and high- SES students (objective SES, cross-sectional data) after propensity score matching, N = 8,333 Sensitivity analyses Importantly, these simple mean comparisons reveal that undermatched students (both low- and high SES students) are less satisfied with the social and academic environment than matched students in most academic years. In addition, these differences become more pronounced toward the fourth year in college, especially for low-SES students. In the fourth year in college, undermatched low-SES students are on average 0.43 point less satisfied with the academic environment, and 0.25 point less satisfied with the social The results of analyses after propensity score matching are presented, a technique that addresses issues concerning endogeneity. Although this procedure addresses possible confounding effects from covariates, it may at the same time harm the generalizability of the findings. After all, the matching procedure excluded participants in the control group (matched students) who have no counterpart in the treatment group because of their estimated propensity score. Therefore, a sensitivity analysis was run, by applying a Journal of Youth and Adolescence (2019) 48:1296–1310 1304 Satisfaction with the social environment Satisfaction with the academic environment β SE β SE Predictors Undermatching (1 = undermatched) −0.06* 0.03 −0.12** 0.04 Low-SES, objective (1 = low-SES) −0.01 0.03 −0.04 0.0 Year (year 1 = ref) Year 2 −0.01 0.02 −0.05* 0.02 Year 3 −0.03 0.03 −0.08** 0.02 Year 4 −0.01 0.02 −0.05* 0.02 Three-way interactions Interaction SES × Undermatching × Year 2 0.00 0.03 0.00 0.02 Interaction SES × Undermatching × Year 3 0.04 0.02 0.01 0.02 Interaction SES × Undermatching × Year 4 −0.03 0.02 −0.05* 0.02 Constant 4.00** 0.03 3.85** 0.03 R-sq 0.04 0.04 N 8,333 8,333 Standardized coefficients. Both models also included college major as covariates and all two-way interactions regarding undermatching, SES, and Year (results not shown) *p < 0.05, **p < 0.01 Standardized coefficients. Both models also included college major as covariates and all two-way interactions regarding undermatching, SES, and Year (results not shown) Standardized coefficients. Both models also included college major as covariates and all two-way interactions regarding undermatching, SES, and Year (results not shown) 3.40 3.50 3.60 3.70 3.80 3.90 4.00 4.10 4.20 Year 1 Year 2 Year 3 Year 4 Satisfaction academic envrionment High-SES, matched Low-SES, matched High-SES, undermatched Low-SES, undermatched Fig. Discussion Discussion Undermatching, when students attend post-secondary institutions which are less selective than their academic credentials would permit, is generally considered as an undesirable outcome because of the long-term con- sequences for students’ job opportunities and wages (Ovink et al. 2018), especially for low-SES students, who are more likely to undermatch (Bastedo and Jaquette 2011). How- ever, there is a gap in the literature regarding the relation between undermatching and students’ subjective experi- ences during college, and its relation with SES. Studying adolescents’ subjective experiences during their years in college is important because of its consequences for college completion (Bowen et al. 2009), and because of the accu- mulating effects that both positive and negative experiences can have in their development toward adulthood (Yoshioka and Noguchi 2009). The literature suggests that when stu- dents are undermatched, the academic demands from their institutions are misaligned with their potential (e.g., Hoxby and Turner 2013), which may lead to less satisfaction with the academic environment. However, experiences of social mismatch and feeling ‘out of place’ when low-SES students enter the most selective institutions are well documented (Jury et al. 2017). The cultural codes in less selective institutions may match better with low-SES students than the cultural codes in highly selective institutions (Deutschlander 2017). Consequently, there may be a posi- tive relation between undermatching and satisfaction with the social environment, but only among low-SES students. In the present study, the relation between undermatching and satisfaction, and the moderating role of SES, was investigated with a large, representative Dutch dataset that includes information about student self-reported satisfaction and student characteristics such as age, motivation, and grades during high school (N = 21,452 respondents). Up till now, undermatching has been studied mainly in the U.S., where undermatching has to be estimated from institutions’ selectivity levels, and students’ eligibility to these institu- tions. Because there are many different ways to define these constructs, concerns have raised regarding comparability and accuracy of these estimations (Rodriguez 2015). In the Netherlands, both institutional selectivity and students’ Undermatching, when students attend post-secondary institutions which are less selective than their academic credentials would permit, is generally considered as an undesirable outcome because of the long-term con- sequences for students’ job opportunities and wages (Ovink et al. 2018), especially for low-SES students, who are more likely to undermatch (Bastedo and Jaquette 2011). Sensitivity analyses 1 Satisfaction with the academic environment (scale 1–5) during the years in higher education among matched- and undermatched low-and high- SES students (objective SES, cross-sectional data) after propensity score matching, N = 8,333 3.60 3.70 3.80 3.90 4.00 4.10 4.20 Year 1 Year 2 Year 3 Year 4 Satisfaction social envrionment High-SES, matched Low-SES, matched High-SES, undermatched Low-SES, undermatched Fig. 2 Satisfaction with the social environment (scale 1–5) during the years in higher education among matched- and undermatched low-and high- SES students (objective SES, cross-sectional data) after propensity score matching, N = 8,333 3.40 3.50 3.60 3.70 3.80 3.90 4.00 4.10 4.20 Year 1 Year 2 Year 3 Year 4 Satisfaction academic envrionment High-SES, matched Low-SES, matched High-SES, undermatched Low-SES, undermatched 3.60 3.70 3.80 3.90 4.00 4.10 4.20 Year 1 Year 2 Year 3 Year 4 Satisfaction social envrionment High-SES, matched Low-SES, matched High-SES, undermatched Low-SES, undermatched Year 3 Year 4 Low-SES, matched Low-SES, undermatched Journal of Youth and Adolescence (2019) 48:1296–1310 1305 qualifications are much easier to determine, leading to highly accurate and undebatable estimations of undermatching, conventional linear regression model predicting student satisfaction, with all covariates as controls, including the whole sample (N = 21,452). Results show the same pattern as the results found after applying the PSM procedure, indicating that the results are not biased by the selection based on the PSM. Therefore, results showed no evidence to suggest that the findings do not generalize to the whole student sample (see Appendix A, Table 6). The study examined satisfaction among low-SES stu- dents all of whom are eligible for the most selective insti- tutions, but who are either in the most selective institutions (match), or in less selective institutions (undermatch). To test whether any effects are specific to low-SES students, their satisfaction was compared with the satisfaction of high-SES students in both selective and non-selective institutions. In addition, it was examined whether these relations (both for low-and high-SES students) change throughout the four years in higher education. Because pre- existing differences may confound the relation between undermatching and satisfaction, propensity score matching (PSM) was applied to test the consequence of under- matching, excluding as much as possible the confounding influences of covariates. Discussion How- ever, there is a gap in the literature regarding the relation between undermatching and students’ subjective experi- ences during college, and its relation with SES. Studying adolescents’ subjective experiences during their years in college is important because of its consequences for college completion (Bowen et al. 2009), and because of the accu- mulating effects that both positive and negative experiences can have in their development toward adulthood (Yoshioka and Noguchi 2009). The literature suggests that when stu- dents are undermatched, the academic demands from their institutions are misaligned with their potential (e.g., Hoxby and Turner 2013), which may lead to less satisfaction with the academic environment. However, experiences of social mismatch and feeling ‘out of place’ when low-SES students enter the most selective institutions are well documented (Jury et al. 2017). The cultural codes in less selective institutions may match better with low-SES students than the cultural codes in highly selective institutions (Deutschlander 2017). Consequently, there may be a posi- tive relation between undermatching and satisfaction with the social environment, but only among low-SES students. The present study findings show that undermatching is related to less satisfaction with the academic and social environment, and that this relation becomes stronger toward the fourth year in higher education. The study did not provide any evidence showing that undermatching is related to more satisfaction among low-SES students. These results do not only suggest that there are no benefits for low-SES students related to undermatching, undermatching even seems to have costs in terms of less satisfaction with the social and academic environment during college, especially toward the later years in higher education. Implications The present study extends the knowledge about the effects of undermatching by showing that also in the short term, during college, undermatching affects students’ well-being. These results are of important because of low-SES students’ higher likelihood to undermatch (Belasco and Trivette 2015). The less positive college experiences related to undermatching may reinforce educational disadvantage for students from low-SES backgrounds. First, the lower satisfaction may have negative consequences for their col- lege completion (Ovink et al. 2018). Second, these enduring experiences of lower satisfaction during college increase the likelihood of encountering stressful experiences related to a low socioeconomic background (Wickrama et al. 2015). This accumulation of stressful experiences during adoles- cence can have detrimental consequences for health and well-being in adulthood (Wickrama et al. 2016), especially for social mobile adolescents (Miller et al. 2015; Wickrama et al. 2016). In addition, the finding that the negative rela- tionship between undermatching and satisfaction enhances toward the later years in college, suggests that this rela- tionship manifests after students’ integration in college. Although speculative, this finding may also suggest a negative relation between undermatching and job- satisfaction after graduation. The finding that the negative relationship between undermatching and satisfaction (social and academic) seems to manifest in the later years in college, suggests that undermatching has especially consequences after students have integrated in their new college. When this negative relationship would have been strongest in their first year, this might have been related to a process of adjustment related to separation from the old situation and transition into the new college. However, the enhanced negative relationship after the phase of transition, seems to reflect how students feel about their situation once they adjusted. Although speculative, this finding may also predict a negative relationship between undermatching and satisfac- tion on the job market, after college. The present study findings show that low-SES students seem not to benefit from undermatching in terms of satis- faction. Endogeneity could lead to an overestimation of the relation between undermatching and satisfaction. For example, students who are not motivated to enter higher education may be more likely to undermatch and to become dissatisfied. In addition, students who are less cognitively talented may be more likely to undermatch and become less satisfied during higher education. Undermatching and academic and social satisfaction The finding that undermatched student are less satisfied with the academic environment (i.e., the content and rig- orousness of the educational program) is in line with lit- erature that suggests that de demands from less selective institutions are misaligned with the capacities of under- matched students (Belasco and Trivette 2015). In less selective institutions, undermatched students are probably not maximizing their full potential (Hoxby and Turner 2013). Previous research has shown that students have higher chances of graduating if the quality level of their institution matches their observed skill levels (Light and Strayer 2000). The lower satisfaction after undermatching shown in the present study may be an important factor in the relation between undermatching and degree attainment. In the present study, the relation between undermatching and satisfaction, and the moderating role of SES, was investigated with a large, representative Dutch dataset that includes information about student self-reported satisfaction and student characteristics such as age, motivation, and grades during high school (N = 21,452 respondents). Up till now, undermatching has been studied mainly in the U.S., where undermatching has to be estimated from institutions’ selectivity levels, and students’ eligibility to these institu- tions. Because there are many different ways to define these constructs, concerns have raised regarding comparability and accuracy of these estimations (Rodriguez 2015). In the Netherlands, both institutional selectivity and students’ The finding that low-SES students’ satisfaction with the social environment does not benefit from undermatching, indicates that there may also be a social mismatch when low-SES students attend less selective institutions in higher education. In the less selective institutions, the proportion low-SES students is higher than in the most selective institutions (Bastedo and Jaquette 2011) (i.e., 40% low-SES 1306 Journal of Youth and Adolescence (2019) 48:1296–1310 students in less selective tracks versus 25% low-SES stu- dents in the most selective tracks in the Netherlands; Dutch Inspectorate of Education 2018). As a consequence, cultural codes in less selective institutions may match better with low-SES students’ backgrounds (Walpole 2003). However, the results suggest that the larger proportion of other low- SES students seem not to elevate their satisfaction regarding experiences with the social environment. This finding may suggest a social mismatch in all higher education institu- tions, regardless of the level of selectivity. Undermatching and academic and social satisfaction In addition, the finding that students who are undermatched, experience less satisfaction with the social environment, suggests that undermatching does not take along benefits in terms of satisfaction with social aspects of college, both for low- and high-SES students. institutions is on average related to less prestigious jobs and lower wages on the long term. Third, both in the U.S. and Europe, low-SES students tend to undermatch more than high-SES students. Fourth, both in the U.S. and in Europe, students’ years in college are usually spent during late adolescence, covering the same developmental stage toward early adulthood. Therefore, it is plausible that the results of the present study are generalizable to the U.S. context. Conclusion Students who attend less selective institutions in higher edu- cation than they are eligible for (undermatching) tend to achieve less job opportunities and lower wages in the long term than students who do not undermatch (Ovink et al. 2018). Therefore, in the literature, undermatching is mainly regarded as an undesirable outcome (e.g., Hoxby and Turner 2013), especially among low-SES students, who are more likely to undermatch (Belasco and Trivette 2015). Because of the importance of subjective experiences during adolescents for their development toward adulthood (Yoshioka and Noguchi 2009), and the gap in the literature regarding undermatching, SES, and student satisfaction, the current study tested with a large-scale cohort study 21,452 respondents (67% female) among adolescents how undermatching is related to students’ satisfaction in college by using propensity score matching (PSM, Thoemmes and Kim (2011)). Results showed a nega- tive relation between undermatch and satisfaction with the social and the academic environment that increases toward the fourth year in college. This relation appeared to be negative for both low- and high-SES students. For example, undermatched students, regardless of their SES, are at the end of the first academic year less satisfied with the academic environment than matched students. In addition, their satisfaction lowers during the first year whereas the satisfaction among matched students remains stable. These findings have important implications for the understanding about undermatching in relation to students’ development, and for policy interventions. The higher likelihood to undermatch among students from low-SES backgrounds may reinforce their educational dis- advantage, because the lower satisfaction tied to under- matching may have negative consequences for their college Moreover, although applying PSM in order to exclude confounding effects of covariates is a highly recommended method to approach the relation between undermatching and satisfaction as close as possible, there might be unob- served confounders. For example, personality traits may also partly determine whether students undermatch or match, and these were not measured. Therefore, despite the use of PSM methodology, it is important to remain cautious with causal interpretations. Next, certain aspects of students’ experiences in college that may influence their satisfaction, such as the possibility to engage in collaborative learning activities or in extra- curricular events, were not measured. Implications Nevertheless, because students with the same eligibility for the most selective institution were selected, and because PSM was applied to exclude the confounding effects of covariates, such as motivation for college and grades during high school, endogeneity is unlikely to explain the current findings. Clearly, these findings have also implications for the formulation of policies and programs for promoting social mobility. Undermatching arises during the transition from high school to the most selective institutions and is related to a wide range of barriers (Page and Scott-Clayton 2016). Traditionally, the knowledge deficit approach states that students’ choice to undermatch is a result of a lack of information about application processes and college costs. Research on college choice processes indeed shows that low-SES students’ tendency to undermatch is highly related to having less access to information about institutions compared to high-SES students; low-SES students are less likely to undermatch when they receive high-quality infor- mation about their possibilities (Hoxby and Avery 2013). However, even with access to ‘perfect information’, undermatching still occurs among low-SES students (Black et al. 2015). The preference approach to undermatch explains this tendency by differences between low- and These findings add to the body of research on the con- sequences of undermatching. Although there are several differences between the U.S. context and the European context in higher education, the basic principles underlying undermatching (i.e., students attend less selective institu- tions than their academic credentials would permit) are the same in many regards. First, both in the U.S. and in Europe, the eligibility for the most selective institutions depends on academic performance during middle adolescence. Second, an important similarity is that attending less selective Journal of Youth and Adolescence (2019) 48:1296–1310 1307 high-SES students in factors that students take into account during their college decision-making, like geographic fac- tors, college fit, and opinions of relatives and peers (Black et al. 2015; Tiboris 2014). From this perspective, it has been argued that undermatching can be the result of a well- informed, autonomous decision (Tiboris 2014). In sum, both the knowledge deficit approach and the preference approach suggest that it is important to offer low-SES stu- dents high-quality information during the transition to higher education. Policy on social equality has encouraged high schools to improve information during the college choice process. Implications The present study indicates that low-SES students should also be informed about their higher risk on lower satisfaction during the later years in higher education when they are undermatched. even to benefit from undermatching. Because of limitations in the dataset, it was not possible to study the role of these college experiences, nor ethnicity, conclusively. Therefore, it is possible that undermatching can contribute positively to students’ subjective experiences when institutions offer certain social activities. Furthermore, the reason for students to undermatch may vary across students and affect satisfaction. For example, low-SES students are likely to undermatch for the reason that they can stay closer to their family and friends (Belasco and Trivette 2015). The motives for students to undermatch may moderate the negative relation between undermatching and satisfaction. In this study, the role of the reason to undermatch could not be tested because this was not mea- sured in the dataset. Initial differences between matched and undermatched students, such as motives to undermatch or self-efficacy, although not of explicit interest in this study, are of potential interest in future research. Limitations Despite the importance of these findings, the present study has several limitations. One limitation is that the data are cross-sectional, and therefore, it cannot with certainty be concluded whether the differences between the years are actually reflecting student development during these years. For example, students who are very dissatisfied may leave higher education, resulting in a biased estimation of satis- faction from year 1 to year 4. However, student drop-out peaks after the first year in higher education: 33% switches or drops out after the first year. Yet, among students who continue after their first year, 86% obtains their diploma (Dutch Inspectorate of Education 2018). Therefore, it is plausible that the data capture student development over years, especially in the later years of higher education when drop-out rates are low. However, longitudinal data are necessary to better map this development. Conclusion Some recent studies with small samples of first students suggest positive effects of undermatching on college experiences among first-year ethnic minorities (Fosnacht 2014, 2015; Lowry 2017), because undermatched students engage more in active and collaborative learning activities in less selective institutions. Especially black students were found to be less affected or 1308 Journal of Youth and Adolescence (2019) 48:1296–1310 completion (Bowen et al. 2009), and because enduring stressful experiences during adolescence can have harmful consequences for their health and well-being in adulthood (Wickrama et al. 2016; Miller et al. 2015). The finding that the negative relationship between undermatching and satisfaction seems to increase after integration into college, suggests that the mismatch may also continue after graduation, on the labor market. Research on reasons to undermatch has shown that high-quality information is important in helping students to make appropriate decisions during their transition into higher education (Black et al. 2015; Hoxby and Avery 2013). Therefore, it is important that students, especially when they have a low-SES background, are informed about the negative relation between undermatching and satisfaction toward the later years in higher education. Data sharing and declaration The datasets analysed during the current study are available upon reasonable request and with permission of Data Archiving and Networked Services (DANS), in the DANS repository [https://dans.knaw.nl/en]. Data sharing and declaration The datasets analysed during the current study are available upon reasonable request and with permission of Data Archiving and Networked Services (DANS), in the DANS repository [https://dans.knaw.nl/en]. Table 6 Sensitivity analyses: Estimated coefficients (Beta) predicting student satisfaction without propensity score matching Conflict of interest The authors declare that they have no conflict of interest. Conflict of interest The authors declare that they have no conflict of interest. Conflict of interest The authors declare that they have no conflict of interest. Ethical approval The current submission does not overlap with any other published, in press, or in preparation articles, books, or pro- ceedings and has not been posted on a website. Our research is not under consideration elsewhere and has been conducted in accordance with ethical standards in the field. Publisher’s note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Acknowledgements We thank Anja van den Broek for valuable sug- gestions and comments. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://crea tivecommons.org/licenses/by/4.0/), which permits use, duplication, adaptation, distribution, and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Authors’ contributions MM conceived of the study, participated in its design, performed the statistical analysis, conducted coordination and wrote the manuscript; WF participated in the design, interpretation of the data and helped to write the manuscript; LB participated in the design, statistical analyses, and interpretation of the data. All authors read and approved the final manuscript. Funding This research was supported by grants from the Netherlands Organization for Scientific Research (016.155.195); the Robert Wood Johnson Foundation (73657); the James S. McDonnell Foundation (220020502); and the Jacobs Foundation (2017 1261 02) awarded to WEF. References Jury, M., Smeding, A., Stephens, N. M., Nelson, J. E., Aelenei, C., & Darnon, C. (2017). The experience of low-SES students in higher education: psychological barriers to success and interventions to reduce social-class inequality. Journal of Social Issues, 73(1), 23–41. Aljohani, O. (2016). A comprehensive review of the major studies and theoretical models of student retention in higher education. Higher Education Studies, 6(2), 1–18. Jussim, L., Eccles, J., & Madon, S. (1996). Social perception, social stereotypes, and teacher expectations: accuracy and the quest for the powerful self-fulfilling prophecy. Advances in Experimental Social Psychology, 28, 281–388. American Psychological Association, Task Force on Socioeconomic Status. (2007). Report of the APA Task Force on Socioeconomic Status. Washington, DC: American Psychological Association. Austin, P. C. (2010). Statistical criteria for selecting the optimal number of untreated subjects matched to each treated subject when using many-to-one matching on the propensity score. American Journal of Epidemiology, 172(9), 1092–1097. Jæger, M. M. (2009). Equal access but unequal outcomes: cultural capital and educational choice in a meritocratic society. Social Forces, 87(4), 1943–1971. Kuncel, N. R., Credé, M., & Thomas, L. L. (2005). The validity of self-reported grade point averages, class ranks, and test scores: a meta-analysis and review of the literature. Review of Educational Research, 75(1), 63–82. Bastedo, M. N., & Jaquette, O. (2011). Running in place: Low-income students and the dynamics of higher education stratification. Educational Evaluation and Policy Analysis, 33(3), 318–339. Belasco, A. S., & Trivette, M. J. (2015). Aiming low: estimating the scope and predictors of postsecondary undermatch. The Journal of Higher Education, 86(2), 233–263. Lee, V. E., & Burkam, D. T. (2002). Inequality at the starting gate: Social background differences in achievement as children begin school. Washington DC: Economic Policy Institute. Black, S. E., Cortes, K. E., & Lincove, J. A. (2015). Apply yourself: Racial and ethnic differences in college application (No. w21368). Cambridge: National Bureau of Economic Research. Light, A., & Strayer, W. (2000). Determinants of college completion: school quality or student ability? The Journal of Human Resources, 35(2), 299–332. Bowen, W. G., Chingos, M. M., & McPherson, M. S. (2009). Crossing the finish line: Completing college at America’s public uni- versities (Vol. 52). New Jersey: Princeton University Press. Lowry, K. M. (2017). Community college choice and the role of undermatching in the lives of African Americans. Community College Journal of Research and Practice, 41(1), 18–26. Bradshaw, M., Kent, B. V., Henderson, W. References M., & Setar, A. C. (2017). Subjective social status, life course SES, and BMI in young adulthood. Health Psychology, 36(7), 682–694. Mayhew, M. J., Rockenbach, A. B., Bowman, N. A., Seifert, T. A., & Wolniak, G. C. (2016). How college affects students: 21st Cen- tury evidence that higher education works. San Francisco: Jossey-Bass. Davidson, C., & Wilson, K. (2013). Reassessing Tinto’s concepts of social and academic integration in student retention. Journal of College Student Retention: Research, Theory & Practice, 15(3), 329–346. Miller, G. E., Yu, T., Chen, E., & Brody, G. H. (2015). Self-control forecasts better psychosocial outcomes but faster epigenetic aging in low-SES youth. Proceedings of the National Academy of Sciences, United States of America, 112(33), 10325-10330. Davis-Kean, P. E. (2005). The influence of parent education and family income on child achievement: the indirect role of parental expectations and the home environment. Journal of Family Psychology, 19(2), 294–304. Mullainathan, S., & Sharif, E. (2013). Scarcity: Why having too little means so much. London: Allen Lane. Ovink, S., Kalogrides, D., Nanney, M., & Delaney, P. (2018). College match and undermatch: assessing student preferences, college proximity, and inequality in post-college outcomes. Research in Higher Education, 59(5), 553–590. y gy Deutschlander, D. (2017). Academic undermatch: how general and specific cultural capital structure inequality. Sociological Forum, 32(1), 162–185. Dutch inspectorate of education. (2018). The State of Education in the Netherlands 2016Utrecht: Dutch inspectorate of education. Page, L. C., & Scott-Clayton, J. (2016). Improving college access in the United States: barriers and policy responses. Economics of Education Review, 51, 4–22. Ellis, B. J., Bianchi, J., Griskevicius, V., & Frankenhuis, W. E. (2017). Beyond risk and protective factors: an adaptation-based approach to resilience. Perspectives on Psychological Science, 12(4), 561–587. Roderick, M., Nagaoka, J., Allensworth, E., Coca, V., Correa, M., & Stoker, G. (2006). From high school to the future: A first look at Chicago public school graduates’ college enrollment, college preparation, and graduation from four-year colleges. Chicago: Consortium on Chicago School Research. Fosnacht, K. (2014). Selectivity and the college experience: How undermatching shapes the college experience among high- achieving students. Presented at the annual meeting of the American Educational Research Association. Philadelphia, PA. Rodriguez, A. (2015). Tradeoffs and limitations: Understanding the estimation of college undermatch. Research in Higher Education, 56(6), 566–594. Fosnacht, K. (2015). Undermatching and the first-year experience: Examining effect heterogeneity. Denver, Colorado. Rosenbaum, P. R., & Rubin, D. B. (1983). Appendix A Table 6 Sensitivity analyses: Estimated coefficients (Beta) predicting student satisfaction without propensity score matching Outcome: Satisfaction with the social environment Outcome: Satisfaction with the academic environment β SE β SE Predictors Undermatching (1 = undermatched) −0.06** 0.01 −0.10** 0.01 Low-SES (1 = low) −0.02* 0.01 −0.02* 0.01 Interaction: Low-SES × Undermatching 0.01 0.01 0.00 0.01 Covariates Gender (1 = male) 0.02* 0.01 0.01 0.01 Age −0.04** 0.01 −0.03** 0.01 Immigrant status (1 = immigrant status) −0.05** 0.01 −0.01 0.01 Home language (1 = Dutch) 0.04** 0.01 0.02* 0.01 Disability or chronicle disease (1 = no) 0.03** 0.01 0.02* 0.01 Average grade high school 0.05** 0.01 0.02* 0.01 Motivation before higher education 0.16** 0.01 0.17** 0.01 Constant 3.54** 0.37 3.42** 0.39 R-sq 0.07 0.06 N 21452 21452 Standardized coefficients. Both models control for college major (8 dummies, results not shown) SES socioeconomic status *p < 0.05; **p < 0.01 Journal of Youth and Adolescence (2019) 48:1296–1310 1309 References The central role of the propensity score in observational studies for causal effects. Bio- metrika, 70(1), 41–55. Frankenhuis, W. E., & Nettle, D. (2018). Open science is liberating and can foster creativity. Perspectives on Psychological Science, 13(4), 439–447. Singh-Manoux, A., Adler, N. E., & Marmot, M. G. (2003). Subjective social status: its determinants and its association with measures of ill-health in the Whitehall II study. Social Science & Medicine, 56 (6), 1321–1333. Howell, J. S., & Pender, M. (2016). The costs and benefits of enrolling in an academically matched college. Economics of Education Review, 51, 152–168. Hoxby, C., & Avery, C. (2013). The missing “one-offs”: the hidden supply of high-achieving, low-income students. Brookings papers on economic activity, 2013(1), 1–65. Sirin, S. R. (2005). Socioeconomic status and academic achievement: a meta-analytic review of research. Review of Educational Research, 75(3), 417–453. Hoxby, C. M., & Turner, S. (2013). Expanding college opportunities for high achieving, low income students (SIEPR 12-014). Stan- ford, CA: Stanford Institute for Economic Policy Research. Smith, J., Pender, M., & Howell, J. (2013). The full extent of student- college academic undermatch. Economics of Education Review, 32, 247–261. Iacus, S. M., King, G., & Porro, G. (2011). Multivariate matching methods that are monotonic imbalance bounding. Journal of the American Statistical Association, 106(493), 345–361. Stephens, N. M., Townsend, S. S., & Dittmann, A. G. (2018). Social- class disparities in higher education and professional workplaces: 1310 Journal of Youth and Adolescence (2019) 48:1296–1310 Yoshioka, M. R., & Noguchi, E. (2009). The developmental life course perspective: a conceptual and organizing framework for human behavior and the social environment. Journal of Human Behavior in the Social Environment, 19(7), 873–884. The role of cultural mismatch. Current Directions in Psycholo- gical Science, 28(1), 67–73. The role of cultural mismatch. Current Directions in Psycholo- gical Science, 28(1), 67–73. Thoemmes, F. J., & Kim, E. S. (2011). A systematic review of pro- pensity score methods in the social sciences. Multivariate Beha- vioral Research, 46, 90–118. Tiboris, M. (2014). What’s wrong with undermatching? Journal of Philosophy of Education, 48(4), 646–664. Marjolein Muskens is Postdoctoral Researcher at the Maastricht University. Her major research interests include educational opportunities for low-income students in education, and developmental pathways related to socioeconomic status. Tinto, V. (1975). Dropout from higher education: a theoretical synthesis of recent research. Review of Educational Research, 45 (1), 89–125. Lex Borghans is Full Professor at the Maastricht University. His major research interests are educational economics, skill development, and social policy. References Van den Broek, A., de Korte, K., Cuppen, J., Wartenbergh, F., Bendig-Jacobs, J., Mulder, J., & Hellegers, A. (2018). Monitor Beleidsmaatregelen 2017-2018: Studiekeuze, studiegedrag & leengedrag in relatie tot beleidsmaatregelen in het hoger onderwijs. Nijmegen: ResearchNed. Willem Frankenhuis is Associate Professor at the Radboud University. His major research interests include development of skills and abilities in adverse conditions, and evolution of developmental mechanisms. Walpole, M. (2003). Socioeconomic status and college: how SES affects college experiences and outcomes. The Review of Higher Education, 27, 45–73. Wickrama, K. A., O’Neal, C. W., & Lee, T. K. (2016). The health impact of upward mobility: does socioeconomic attainment make youth more vulnerable to stressful circumstances? Journal of Youth and Adolescence, 45(2), 271–285. Wickrama, K. A. S., O’Neal, C. W., Lee, T. K., & Wickrama, T. (2015). Early socioeconomic adversity, youth positive develop- ment, and young adults’ cardio-metabolic disease risk. Health Psychology, 34(9), 905–914. Lex Borghans is Full Professor at the Maastricht University. His major research interests are educational economics, skill development, and social policy.
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Economic regulation and market instruments for environmental protection, including fees for negative impacts
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* Corresponding author: erzakirova@inbox.ru E3S Web of Conferences 291, 02032 (2021) SDGG 2021 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 https://doi.org/10.1051/e3sconf/202129102032 Economic regulation and market instruments for environmental protection, including fees for negative impacts Elina Zakirova* Ural State University of Economics, 620144 Yekaterinburg, Russia Ural State University of Economics, 620144 Yekaterinburg, Russia Abstract. Based on the results of the analysis of the European and Russian experience of state regulation of environmental protection, in the article the author examines the possibilities of using economic instruments in the field of environmental policy. It is substantiated that some market instruments are able to bring the state income, which can either be directed to environmental protection expenditures, or used to compensate taxes on labor and capital. Environmental budget items are underfunded, despite the positive dynamics of environmental protection costs associated with the implementation of the national project “Ecology”. The author emphasizes the need for market regulation mechanisms, since they allow taking into account the interests of all participants in state policy: consumers, the state and producers. One of the topical areas of environmental policy is the establishment of a system for the sale of quotas for emissions of greenhouse gases, which will reduce carbon dioxide emissions and stimulate the development of “green” technologies in the financial and industrial spheres. © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). 1 Introduction In this regard, the following sectors of economic activity need more regulation than others: insurance (all types that consider extreme weather events); pricing policy (water resources, ecosystems); funding through public-private partnerships or private funding (flood protection, coastal protection, water resources); government regulation (building codes, zonal planning); research and development (agriculture, health care) [9]. behavior of subjects, changing the structure of their economic incentives [8]. For example, the costs of environmental externalities such as greenhouse gas emissions are usually not reflected in consumption or investment decisions but are borne by third parties. Within environmental management, the importance of these tools is that they operate in a cost- effective and environmentally-friendly manner, encouraging businesses to reduce pollution. In this regard, the following sectors of economic activity need more regulation than others: insurance (all types that consider extreme weather events); pricing policy (water resources, At the same time, economic (market) and social regulation are distinguished [10]. Within economic regulation, two more types are distinguished: structural regulation and regulation of behavior [11]. Structural regulation refers to the regulation of the market structure (entry/exit barriers, as well as rules prohibiting firms from providing professional services in the absence of recognized qualifications). Behavior regulation is used to regulate the behavior of producers and consumers in the market (price control, the requirement to meet any demand, product labeling, advertising rules, minimum quality standards). Economic regulation is mainly carried out in relation to the so-called natural monopolies and market structures with imperfect or excessive competition. The goal of economic regulation is to counteract the negative welfare effects of dominant company behavior and to stabilize market processes. Social regulation includes regulation in the areas of the environment, occupational safety and health, consumer protection and labor protection (equal opportunity, etc.). The instruments used include regulations on hazardous emissions, safety rules in factories and workplaces, goods labeling, prohibition of discrimination when hiring personnel. 2 Materials and methods In this study, general scientific methods of analysis and synthesis were used to process the materials of the Ministry of Finance of the Russia (report “Budget for Citizens” [12], European Environment Agency [13], Institute for European Environmental Policy [14]. 1 Introduction There is no clear definition of the term “regulation” in scientific publications. Some researchers try to make it suitable for further analysis through systematization [1, 2, 3]. Others refrain from precise definition of regulation [4, 5, 6, 7]. In this paper, regulation refers to the use of legal instruments to achieve the goals of socio-economic policy. A characteristic feature of legal instruments is that the government can compel individuals or organizations to comply with regulations, subject to statutory responsibilities. Corporations may be forced, for example, to set certain prices, supply certain goods, not operate in certain markets, use certain methods in the manufacturing process, or pay statutory minimum wages. Sanctions can include fines, publicizing violations, jail time, ordering certain action, injunctive relief, sale of business, or closing of business. A few regulatory instruments are based on economic principles and can be used to indirectly stimulate desired behavior, increase the perception and effectiveness of measures to adapt to market conditions. In the literature on the analysis of such instruments, the terms “economic regulation” and “market regulation” are often confused. Instruments of market (economic) regulation are considered instruments of indirect regulation that affect the https://doi.org/10.1051/e3sconf/202129102032 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 behavior of subjects, changing the structure of their economic incentives [8]. For example, the costs of environmental externalities such as greenhouse gas emissions are usually not reflected in consumption or investment decisions but are borne by third parties. Within environmental management, the importance of these tools is that they operate in a cost- effective and environmentally-friendly manner, encouraging businesses to reduce pollution. In this regard, the following sectors of economic activity need more regulation than others: insurance (all types that consider extreme weather events); pricing policy (water resources, ecosystems); funding through public-private partnerships or private funding (flood protection, coastal protection, water resources); government regulation (building codes, zonal planning); research and development (agriculture, health care) [9]. behavior of subjects, changing the structure of their economic incentives [8]. For example, the costs of environmental externalities such as greenhouse gas emissions are usually not reflected in consumption or investment decisions but are borne by third parties. Within environmental management, the importance of these tools is that they operate in a cost- effective and environmentally-friendly manner, encouraging businesses to reduce pollution. 3 Results and discussion The spheres of application of state regulation are quite extensive. Traditionally, education, health care, agriculture, culture, social and environmental policy need additional support from the state. However, compared to the costs of national defence and national security, the environmental item of budget expenditures appears to be underfunded (Table 1). At the same time, there is a positive trend in spending on environmental protection. This is due to the implementation of the national project “Ecology” from 2019 to 2024. able 1. Expenditures of the federal budget of the Russian Federation for 2019, billion rubles [12] Table 1. Expenditures of the federal budget of the Russian Federation for 2019, billion rubles [12] Budget item 2020 2019 2018 Variation, % National issues 1,557.4 1,420.0 1,319.1 +18 National defense 3,087.0 2,926.2 2,827.9 +9 National security and law enforcement 2,430.4 2,206.8 2,077.8 +17 National economy 2,658.4 2,632.4 2,464.6 +8 Housing and utilities 260.8 216.4 158.1 +65 Environmental protection 343.8 187.6 113.2 +204 Education 912.5 843.7 702.2 +30 Culture, cinematography 144.4 127.2 102.7 +41 Health care 1,027.9 655.6 476.4 +116 2 https://doi.org/10.1051/e3sconf/202129102032 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 Table 1. Continued Social politics 5,004.1 4,887.8 4,621.3 +8 Physical culture and sport 74.7 61.3 65.7 +14 Media 94.8 75.9 84.0 +13 Service of state and municipal debt 897.0 852.1 814.3 +10 General interbudgetary transfers 1,010.2 944.1 981.4 +3 Total 19,503.3 18,037.2 16,808.8 +16 Spending on environmental protection is less than 1% of GDP (Figure 1). The industry needs additional financial support Spending on environmental protection is less than 1% of GDP (Figure 1). The industry needs additional financial support. Spending on environmental protection is less than 1% of GDP (Figure 1). The industry needs additional financial support. Fig. 1. Costs of environmental protection in the Russian Federation. 1,3 1,2 1,1 1,0 0,9 0,9 0,9 0,8 0,8 0,7 0,7 0,7 0,7 0,7 0,7 0,7 0 0,5 1 1,5 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 % to GDP 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 201 Fig. 1. Costs of environmental protection in the Russian Federation. Fig. 1. Costs of environmental protection in the Russian Federation. 3.1 Market instruments in environmental regulation Environmental pollution and depletion of natural resources occurs due to the mispricing of the goods and services that people produce and consume. Market-based instruments (taxes, levies, transferable environmental quotas) help to achieve environmental, economic, and social policy objectives in a cost-effective way, considering the hidden costs of production and consumption for human health and the. These costs are often borne by people who do not even benefit from the use of these products. Market-based instruments are effective in the following areas of environmental protection: combating climate change, preserving nature and biodiversity, protecting the environment and human health, as well as through the wise use of resources and the organization of waste collection and disposal. However, it should be emphasized that some market-based instruments generate income that can either be channelled as environmental costs or used to offset taxes on labor and capital. 3.2 European experience Consider the European experience in the field of environmental management. The European Environment Agency classifies market-based instruments for environmental regulation into five groups [13]: (1) Transferable environmental quotas - designed to achieve reductions in pollution (such as CO2 emissions) or resource use (such as fishing quotas) in the most efficient way by providing market incentives for trade; (2) Environmental taxes - designed to change prices and therefore the behavior of producers and consumers, as well as to increase income; (3) Environmental fees - designed to cover (part or all) the costs of environmental services and pollution control measures such as wastewater treatment and waste disposal; (4) Environmental subsidies and incentives - designed to stimulate the development of new technologies, to help create new markets for environmental goods and services, including technology, to encourage changes in consumer behavior through green procurement schemes, to temporarily support the achievement of higher levels of environmental protection 3 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 https://doi.org/10.1051/e3sconf/202129102032 at the expense of the company; (5) Liability and compensation schemes - are aimed at ensuring adequate compensation for damage caused by activities hazardous to the environment, and provide means of prevention and recovery (so-called “payment for negative impact”). This classification is generally accepted and applied in many countries. OECD, World Bank and UN also use this classification in their reports and reports. at the expense of the company; (5) Liability and compensation schemes - are aimed at ensuring adequate compensation for damage caused by activities hazardous to the environment, and provide means of prevention and recovery (so-called “payment for negative impact”). This classification is generally accepted and applied in many countries. OECD, World Bank and UN also use this classification in their reports and reports. p p In this paper, we would like to pay significant attention to only two instruments: (1) transferable environmental quotas and (2) taxes and fees. (1) Transferable environmental quotas. Total emissions from stationary plants across the EU decreased by 4.1% between 2017 and 2018. Emissions from combustion plants decreased by 5.9%, mainly due to the phase-out of coal in power plants, while emissions from other industrial installations were down 0.7%. Airline emissions continued to rise, increasing by 4.0% in 2018 compared to 2017, mainly reflecting the growing demand for air travel [13]. p y g g g Emissions are expected to continue to decline, albeit at a slower rate than previously. 3.2 European experience The overall projected reduction of 36% by 2030 from 2005 levels is not yet in line with the 43% reduction target. In several countries, an increase in emissions is expected until 2030 [13]. Emissions are expected to continue to decline, albeit at a slower rate than previously. The overall projected reduction of 36% by 2030 from 2005 levels is not yet in line with the 43% reduction target. In several countries, an increase in emissions is expected until 2030 [13]. g p Although fewer emission allowances were offered at auctions in 2018 than in 2017, revenues from auctions increased from €5.5 billion to €14.1 billion. This fact reflects an increase in the average price of quotas from €5.8 in 2017 to €15.5 per tonne in 2018 [13]. US experience confirms that emissions trading has great potential for savings in environmental compliance costs. This tool works better if the number and variety of sources that fall under the “limitation” is greater, and the technological requirements for individual sources are less stringent. g (2) Environmental taxes. The evidence for the environmental effectiveness of taxes is generally positive; they work when the tax is high enough to stimulate pollution abatement measures. Austria, Denmark, and the Netherlands are using different mechanisms to reduce carbon dioxide emissions. The use of market incentives (taxes and subsidies) in Denmark was assessed as a more effective form of political intervention than other approaches such as the combination of long-term voluntary agreements and subsidies in the Netherlands and laissez faire in Austria. In the EU, motor fuel taxes, together with taxes on the sale or registration of motor vehicles, account for more than 90% of the total environmental tax. The European vehicle fleet is more energy efficient, and carbon dioxide emissions from transport are 2-3 times lower than in the USA. Government revenues from environmental taxes in the European Union were €369 billion in 2017, compared with €264 billion in 2002. During the same period, the share of environmental taxes in total government revenue from taxes and social contributions decreased from 6.8% in 2002. up to 6.1% in 2017 Energy taxes account for 77% of environmental tax revenue, far ahead of transport taxes (20%) and pollution and resource taxes (3%). 3.3 Russian experience Having briefly reviewed the experience of European countries in the field of decision-making in the management of environmental protection programs, let us turn to Russian practice. At the moment, there is no separate “environmental tax” in Russia, but discussions about its introduction have been going on since 2018. The following taxes in force in Russia can be classified as environmental. Water tax is payable for the use of water if such use requires a license. Currently, only groundwater extraction is licensed. Typically, the amount of water tax depends on the volume of water produced, the type of water body and water basin. For example, the following tax rates are applied: for 1000 m³ of river or lake water - from 693 to 1,566 roubles; for 1000 m³ of sea water - from 9.98 to 34.37 roubles. Other water uses that do not require a license may 4 https://doi.org/10.1051/e3sconf/202129102032 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 still be subject to water use charges in accordance with the Russian Water Code. Such payments are not considered taxes. still be subject to water use charges in accordance with the Russian Water Code. Such payments are not considered taxes. The environmental fee is paid by manufacturers and importers of the goods to be processed. Payers of the levy can either process or pay the levy. However, Russian environmental authorities recently found recycling ineffective and prepared a draft law proposing to oblige all manufacturers and importers of goods and packaging to pay an environmental fee under the supervision of tax authorities, which are considered more efficient in terms of collection of taxes and fees than Russian environmental authorities, which are currently collecting fees. In addition, this levy is proposed to finance the activities of specialized organizations responsible for processing. Currently, the rates of environmental tax for various types of goods are set by the Russian Government, depending on the type of goods, their packaging and whether the corresponding processing target has been achieved. A scrapping fee is payable for certain activities using motor vehicles and trailers. 3.3 Russian experience The levy is paid by: (1) importers or car manufacturers; (2) buyers of vehicles for which fees were not paid by the previous owner; (3) owners of vehicles placed under a free customs zone applied in the special economic zone of the Kaliningrad region when changing the customs procedure (except for re-export) if the disposal fee has not been paid earlier. The list of vehicles to be levied and the applicable rates are set by the Government. Rates vary depending on the type of vehicle, its power, age, engine size, weight, etc. Several provisions of Russian tax legislation are also aimed at environmental protection and energy efficiency, including: (1) an investment tax credit is available to taxpayers engaged in R&D, equipment modernization to improve energy efficiency, or environmental protection measures (Article 67 of the Russian Tax Code); (2) accelerated depreciation of energy efficient fixed assets (Art. 259.3); (3) exemption from property tax for energy efficient fixed assets (art. 381); (4) reduced rates of transport tax depending on the ecological class of vehicles (Art. 361). There is also a charge for negative impact on the environment. 4 Conclusion Russia is currently exploring options for the application of economic instruments in the field of environmental protection, including a system for setting tariffs for carbon emissions. This practice could provide a 25-30% reduction in greenhouse gas emissions by 2030 below the 1990 level. In 2014, the country's government adopted a plan to reduce greenhouse gas emissions. This document includes the development and implementation of an accounting and reporting system at the company level, an assessment of emission reduction potentials, and the development of a mitigation concept and an action plan that could potentially include the sale of emission quotas. In addition, the Government has established an action plan to improve the regulation of greenhouse gas emissions and prepare for the ratification of the Paris Agreement. g We believe that market regulation mechanisms are necessary because they allow considering the interests of all participants in state policy: the population (consumers), the state and financial and industrial enterprises (producers). The World Bank Group [15] estimates that Russia's greenhouse gas reduction targets are relatively modest, which hinders the development of green finance. Traditionally, it is believed that there are a lot of taxes and fees in Russia, the population is practically not interested in environmental problems, therefore, the introduction of a new “environmental” tax or various fees (for example, for packaging, etc.), as in Europe, is unlikely perceived positively and will not find understanding among the population. The current legislation provides for a system of compensation for environmental damage, so it is better to focus efforts on encouraging companies to move production on an “ecological track”. Considering Russian realities, we 5 E3S Web of Conferences 291, 02032 (2021) SDGG 2021 https://doi.org/10.1051/e3sconf/202129102032 believe it most urgent to stimulate environmental policy by reducing greenhouse gases. This is possible with the establishment of a system for the sale of quotas for emissions of harmful gases. Firstly, this policy will help to significantly accelerate the implementation of the plan to reduce greenhouse gases, and secondly, it will stimulate the development of “green” technologies in both the financial and industrial spheres. believe it most urgent to stimulate environmental policy by reducing greenhouse gases. This is possible with the establishment of a system for the sale of quotas for emissions of harmful gases. 4 Conclusion Firstly, this policy will help to significantly accelerate the implementation of the plan to reduce greenhouse gases, and secondly, it will stimulate the development of “green” technologies in both the financial and industrial spheres. Acknowledgments The reported study was funded by RFBR and MES RSO, project number 20-51-00001. The reported study was funded by RFBR and MES RSO, project number 20-51-00001. References 1. R. Baldwin, M. Cave, Understanding regulation: theory, strategy and practice (Oxford University Press, Oxford, 1999) 2. B. Morgan, K. Yeung, An introduction to law and regulation (Cambridge University Press, Cambridge, 2007) 3. A. Ogus, Regulation: legal form and economic theory (Hart Publishing, Oxford, 2004) 4. R. Ekelund, The foundations of regulatory economics (Edward Elgar, Cheltenham, 1998) 5. G. Fromm, Studies in public regulation (MIT Press, Cambridge, 1981) 6. D. Spulber, Regulation and markets (MIT Press, Cambridge, 1989) 7. K. Train, Optimal regulation (MIT Press, Cambridge, 1997) 8. Market-based instruments for environmental policy in Europe (EEA, 2005) https://www.eea.europa.eu/ 9. S. Agrawala, S. Fankhauser, Economic aspects of adaptation to climate change. Costs, benefits and policy instruments (OECD, Paris, 2008) 10. W.K. Viscusi, J. Vernon, J. Harrington, Economics of regulation and antitrust (MIT Press, Cambridge, 2005) 11. G. Majone, Deregulation or re-regulation (Pinter Publishers, London, 1990) 12. Budget for Citizens (Ministry of Finance, Moscow, 2019) https://www.minfin.ru/ 13. The EU Emissions Trading System in 2019: trends and projections, https://www.eea.europa.eu/ 13. The EU Emissions Trading System in 2019: trends and projections, https://www.eea.europa.eu/ 14. Environmental tax reform in Europe: opportunities for the future, https://ieep.eu/publications/ 14. Environmental tax reform in Europe: opportunities for the future, https://ieep.eu/publications/ 15. Russia green finance: unlocking opportunities for green investments (World Bank, 2018) http://documents1.worldbank.org/ 15. Russia green finance: unlocking opportunities for green investments (World Bank, 2018) http://documents1.worldbank.org/ 6
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A Comprehensive Literature Review on Understanding Job Burnout: Causes, Consequences, and Prevention Strategies
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International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 A Comprehensive Literature Review on Understanding Job Burnout: Causes, Consequences, and Prevention Strategies Krina Anadkat1, Dr. Meeta Joshi2 1 Research scholar, Marwadi University, Rajkot, Gujarat, India 2 Associate professor, Faculty of Management Studies Marwadi University, Rajkot, Gujarat, India Abstract “Job burnout, a well-known work-related stress condition characterized by emotional exhaustion, professional inefficacy, and cynicism, has been traditionally associated with human care professions like teaching and nursing. However, research has shown that it also affects managers and workers in diverse industries, including banking. This comprehensive literature review critically synthesizes the existing research on job burnout, providing insights into its causes, consequences, prevention strategies, and treatment measures. The review also discusses the main measures used to assess job burnout, such as the Maslach Burnout Inventory (MBI), Burnout Measure (BM), and Oldenburg Burnout Inventory (OLBI). The findings of this review contribute to the current understanding of job burnout and highlight the need for further research and effective interventions in diverse work settings. The quality and relevance of this review make it suitable for publication in reputable Inder science journals focused on organizational behavior, management, and psychology. Keywords Job Burnout, Work-related Stress, Emotional Exhaustion, Professional Inefficacy, Cynicism, Human Care Professions, Managers, Banking Industry, Prevention, Treatment, Maslach Burnout Inventory (MBI), Burnout Measure (BM), Oldenburg Burnout Inventory (OLBI), Literature Review. 1 Corresponding Author, email: krina.anadkat111467@marwadiuniversity.ac.in © Common Ground Research Networks, Krina Anadkat, All Rights Reserved. Acceptance: 16June2023, Publication: 04July2023 2 Second Author, email: meeta.joshi@marwadieducation.edu.in Page | 1278 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 Introduction A long-standing social issue was described by the term "job burnout," which has numerous variations depending on the time period, researchers, regions, and languages. (Schaufeli et al., 2009). Burnout at work is a syndrome brought on by a protracted sensitivity to stress at work. Both the company and the employees themselves must pay a lot of expenses. The importance of job burnout is demonstrated by its correlation with a variety of adverse organisational outcomes, including absenteeism, different forms of health problems, including cardiovascular concerns, and mental health issues, including insomnia. (Cordes and Dougherty, 1993; Maslach and Leiter, 2016b; Schaufeli and Buunk, 2003; Shirom and Melamed, 2005). Burnout's detrimental effects have sparked calls for remedial programmes that will both enhance employees' quality of life and stop organisational losses. (Awa et al., 2010). Exhaustion, professional effectiveness, and cynicism are the three components of job burnout that are factored into the Maslach burnout inventory's subscales. (Maslach et al., 2001; Maslach and Leiter, 2008). The most researched part of job burnout is exhaustion, which stands for the stress factors. (Maslach et al., 2001). It entails extreme physical and emotional tiredness, which impairs the worker's capacity for effective work. Cynicism, also known as depersonalization, is the loss of the human aspect in interactions with others and is characterised by scepticism and a chilly demeanour towards consumers. (Maslach, 2006; Maslach et al., 2001). Professional inefficacy, also known as diminished personal accomplishment, is the propensity for an individual to adversely judge themselves as well as a significant sense of inefficacy at work and in social interactions. (Cordes and Dougherty, 1993; Maslach et al., 1996). However, numerous studies have revealed that weariness and cynicism or disengagement are the primary characteristics of burnout. (Bakker et al., 2004; Demerouti et al., 2001, 2010; Peterson et al., 2008). This article aims to give a concise overview of the topic of job burnout, its origins, and effects on people and organisations. The report discusses organisational and individual intervention techniques that lessen or prevent burnout. The article also offers a summary of the key indicators of burnout. The structure of the paper is as follows. An outline of the phenomenon's emergence and evolution is provided in the first part. The causes of Job Burnout's organisational and personal elements are then thoroughly examined. Along with individual and organisational therapeutic options, the organizational, physical, and psychological effects of job burnout are additionally examined. Page | 1279 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 Burnout: A Brief Overview The first seeds were sown in 1974 when American psychologist Herbert Freudenberger popularised the term "Burnout" in academic circles. In his work "Staff burn-out," the author examined the stress reactions displayed by volunteers at the St. Mark's Free Clinic in New York. Freudenberger coined the phrase to characterise the volunteer's progressive physical and mental exhaustion, decreased dedication, and productivity. (Ahola and Hakanen, 2007; Bilge, 2006; Freudenberger, 1974). Freudenberger claims that the first indication of burnout is when an employee works longer and harder yet achieves fewer goals. (Freudenberger, 1977). The research and advancement of the idea were pioneered by Christine Maslach and her colleges, independently and concurrently. Maslach has made significant contributions to the study of this phenomenon's interpretation and comprehension in a variety of professions. (Valcour, 2016). When Maslach and her colleagues were interviewing a group of human services employees in California, they came across the phrase. (Schaufeli, 2017). Maslach was interested in understanding how these service workers dealt with emotional arousal at work by using cognitive methods like "dehumanization." (Maslach and Schaufeli, 1993). Maslach discovered from the interviews that the staff members felt worn out and began to have a pessimistic outlook towards the service reception. (Schaufeli et al., 2009).Burnout is thus described by Maslach and Jackson as "a syndrome of emotional exhaustion, depersonalization, and reduced personal accomplishment, which can occur among individuals who work with people in some capacity" (Maslach and Jackson, 1984. p. 134). As a result, Maslach and her colleagues created "the Maslach burnout inventory (MBI)," which is one of the most well-known and widely used self-reporting instruments to assess burnout in a variety of human services professions. (Maslach and Jackson, 1981; Schaufeli, 2017). Researchers have been motivated and inspired by this breakthrough to look into how widespread this phenomenon is among workers. (Cordes and Dougherty, 1993). Numerous studies have been done on human services workers, who are thought to be the most vulnerable to psychological abuse because their jobs require a lot of interpersonal contact. (Maslach and Jackson, 1984). These research' findings showed that the psychological stress brought on by the work of human services professionals has a wide range of negative effects. Studies of a similar nature were carried out on nurses, police officers, and attorneys. (Cordes and Dougherty, 1993). Maslach and Jackson (1984) and Maslach (2006) assert that burnout is not exclusive to occupations in the human services. Burnout seems to be related to the workplace, and it has been obvious that the condition is not only present in the health care industry but Page | 1280 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 also in other fields of employment (such as telecom, IT, business, corporate, and sports), (Maslach, 2006; Maslach and Jackson, 1984; Maslach and Schaufeli, 1993). With the development of alternative burnout measurements, such as the Oldenburg Burnout Inventory (OLBI) (Demerouti et al., 2003), the Burnout Measure (BM) (Pines and Aronson, 1988), and the Shirom-Melamed burnout measure, as well as the most recent version of MBI, the MBIgeneral survey (MBI-GS), which is to be used in all occupations (Maslach et al., 2012; Schaufeli (Shirom and Melamed, 2006). The Causes of Job Burnout In general, the pervasive belief that core job conditions and secondarily personality variables cause burnout (Bianchi, 2018; Maslach, 2003, 2006; Shanafelt et al., 2017). More proof and consideration were given to the effect of the employment variable than to the personal ones. (Bianchi, 2018; Maslach et al., 2001). Modern ideas, however, contend that the organisational environment should simultaneously examine both personal and job qualities. (Bianchi, 2018; Maslach and Leiter, 2016a). According to Maslach et al. (2001, p. 414), these job characteristics (organizational risk factors) are assembled within six key aspects of the workplace context: 1.Workload: One of the most frequently cited causes of burnout and the one most directly linked to the tiredness aspect of burnout is the workload. (Maslach and Leiter, 2008). The imbalance can, in the simplest scenario, be caused by the many expectations and duties, such as deadlines and targets, which be carried out with insufficient resources. 2.Control: A measure of how much freedom employees have to do their jobs as they see fit. The inconsistencies in control show that the employee does not have enough control over the crucial factor and the tools required for the task. 3.Reward: A reflection of appreciative comments and recognition, whether monetary, interpersonal, or both. Here, the discrepancy stands for the absence of appreciation for the job that people accomplish. 4.Community: Demonstrates the effectiveness of interpersonal relationships and collaboration interactions when interacting with coworkers, bosses, and clients 5.Fairness: Displays respect, candor, and trust in the workplace. When a worker discerns a lack of fairness at work, there is a mismatch. Page | 1281 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 6. Values: Shows how an individual's goals, inspiration, and values are reflected in their work (Maslach and Leiter, 2008). When the organisational values and the individual values clash, there is an imbalance. (Maslach et al., 2001). Any mismatch or imbalance between the person and the six areas of the profession, according to Maslach and Leiter (2008, 2016) and Maslach et al. (2001), may increase the risk of burnout. Contrarily, the likelihood of engagement increases with a better level of fit between the individual and the domains. (Maslach et al., 2001; Maslach and Leiter, 2008, 2016b). Some personal characteristics of people may also increase the risk of burnout, even while factors that indicate a mismatch between the person and the profession may increase that risk. Personality qualities may be important coping mechanisms or intensifiers of the burnout component (Ghorpade et al., 2007). (Maslach and Leiter, 2016a). People who score highly on hardiness, which is a group of personality traits utilised by people as a coping technique in stressful situations, are more resistant to buffering the effects of stressful events and burnout. (Kobasa et al., 1982; Moradi et al., 2013).However, those that exhibit a less resilient disposition also score higher on the burnout scale, particularly on the weariness dimension. (Maslach et al., 2001; Maslach and Leiter, 2016a). People with a greater external locus of control—those who believe that events and accomplishments are the consequence of luck, fate, or the influence of others—have higher rates of burnout. (Rotter, 1966). People who regard their actions, abilities, and efforts as having a greater degree of internal locus of control (Rotter, 1966), on the other hand, are less likely to experience burnout. (Maslach et al., 2001).Additionally, neuroticism is closely linked to a higher degree of burnout. (Bianchi, 2018; Swider and Zimmerman, 2010). According to Semmer (2006), neurotic people tend to exhibit emotional instability, anxiety, hostility, and a propensity for emotional pain, all of which are consistent with the job burnout feature. The Consequences of Job Burnout Job burnout has been linked to a variety of negative workplace consequences. Burnout was frequently seen as a predictor of "absenteeism" (Bakker et al., 2003; Borritz et al., 2006), "turnover" (Maslach, 2006; Maslach and Leiter, 2016b; Wright and Cropanzano, 1998), "job attitudes" (Moore, 2000), and job performance, for example. (Halbesleben and Buckley, 2004; Keijsers et al., 1995; Wright and Bonett, 1997). According to a study by Jackson et al. (1986), the three burnout dimensions, particularly emotional exhaustion, were substantially connected with teachers' decision to quit their employment. (Jackson et al., 1986). Wright and Cropanzano (1998) looked at emotional Page | 1282 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 weariness as a predictor of job performance and turnover in a different study. They discovered that worn-out workers exhibit diminished job performance and eventually quit their jobs. (Wright and Cropanzano, 1998). 189 hotel employees were the subjects of an investigation by Zhou et al. (2014) into the mediating effect of job fatigue on role conflict and job performance. The study discovered a link between role conflict and burnout, and that both factors have a negative impact on workers' performance. (Zhou et al., 2014). In South Tangerang junior high school teachers, Sovitriana et al. (2019) looked at the theoretical model of social support, work satisfaction, and interpersonal communication's influences on burnout, with self-esteem serving as the mediator. The study found a link between the "theoretical model" and burnout that was harmful, with self-esteem acting as a mediating factor. 318 mid-level managers of four- and five-star hotels operating in Alanya, Turkey were the subjects of an investigation by Yirik et al. (2015) into the relationship between organisational stress and levels of organisational burnout. The results of data analysis show that midlevel managers' ages have an impact on how stressed and burned out they are at work. Mid-level managers' gender has a significant impact on the organisational stress they experience, but not on their levels of burnout. Managers' educational backgrounds affect how stressed out their organisations are, but not how burned out they are. Managerial departments have an impact on organisational stress and burnout. Manager positions affect their levels of burnout but not their degrees of organisational stress. By producing interpersonal conflict and interrupting the workplace routine, burnout sufferers can harm relationships at work. (Maslach, 2006). Burnout "can be contagious and perpetuates itself through social interactions on the job," claim Maslach and Leiter (2016).(Maslach and Leiter, 2016b. p. 106). In a 2005 study, Bakker et al. looked into the transmission of burnout among 1849 critical care nurses. The three burnout features of emotional weariness, depersonalization, and diminished personal accomplishment were discovered to be contagious, according to the study. More specifically, the study's findings revealed that the three burnout characteristics were significantly impacted by perceived burnout concerns among coworkers. (Bakker et al., 2005). Similar findings were obtained in González-morales et al. (2012) and Bakker et al. (2001). Job burnout has been associated with a number of negative effects on an employee's physical and mental health. (Burke and Deszca, 1986; Cordes and Dougherty, 1993; Halbesleben and Buckley, 2004; Maslach, 2000; Maslach and Leiter, 2016b; Ozturk and Ay, 2018). Maslach and Leiter (2016) found that the exhaustion component of burnout is more closely related to Page | 1283 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 the classic stress variable than the other two elements, making it the most predictive of stressrelated physiological and mental repercussions. (Maslach and Leiter, 2016b). Examples of physical health issues include migraines, tiredness, type 2 diabetes, and cardiovascular issues. (Leiter et al., 2013; Maslach and Leiter, 2016b). Additionally, job burnout might result in death, which is thought to be one of its worst consequences. In an 8-year study of a sample of Finnish forest sector workers, the link between job burnout and accidents was examined. According to the study, significant injuries were associated with burnout combatants (exhaustion and cynicism). However, during the 8-year follow-up investigation, there was no connection between the third aspect of burnout and worker injuries. (Ahola et al., 2013). Additionally, 2300 Swedish women were subjected to an investigation by Grossi et al. (2009) into the relationship between burnout and changes in pain feelings. The study discovered that a higher degree of burnout predicted general pain in a variety of physical sites, such as (back and shoulder pain), and was more significant to pain-related impairment. (Grossi et al., 2009). Additionally, it has demonstrated the ability to predict mortality, type 2 diabetes, coronary heart disease, Appels and Schouten's illness, long-term fatigue, Leone et al., 2009; Melamed et al., 2006; Toker et al., 2012; (Ahola et al., 2010). Burnout has been observed to precede some mental effects, such as insomnia, depression, and worry, when it comes to psychological repercussions. (Leiter et al., 2013; Maslach and Leiter, 2016a; Shirom, 2009; Shirom et al., 2005; Shirom and Melamed, 2005). For instance, Armon et al. (2008) investigated the relationship between burnout and sleeplessness at two different time points. (18 months apart). Their data indicate a weak initial correlation between burnout and sleeplessness. However, they discovered that burnout and sleeplessness can predict each other's development and intensification among the employee's overtime at the 18-follow-up. (Armon et al., 2008).comparable outcomes in (Armon, 2009). 6.000 Swedish female workers made up the sample for Soares et al.'s (2007) investigation on the relationship between burnout and social, economic, demographic, lifestyle, and health aspects. The survey discovered that 41% of women experienced severe levels of burnout and depression. However, only 5.8% of the sample showed indications of sadness and modest levels of burnout. (Soares et al., 2007). Additionally, Peterson et al. (2007) investigate the relationship between burnout and a few physical and psychological consequences among Swedish healthcare employees. Researchers looked at a sample of 3719 persons and discovered that those with high levels of burnout were more likely to experience despair and anxiety. The authors also suggest that depression is more relevant to the tiredness component of burnout. (Peterson et al., 2008). Page | 1284 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 Job Burnout Intervention Due to the detrimental effects of job burnout, intervention programmes are now being called for in order to improve employee quality of life as well as to avert organisational losses from job turnover, desertion, and poor performance. (Awa et al., 2010). The two main categories of burnout interventions focus on the individual and the organization, respectively. Individual-level interventions aim to increase the individual's capacity to deal with workplace stressors. Intervention options at the organisational level concentrate on removing or lessening organisational stressors. (Le Blanc and Schaufeli, 2008; Maricut et al., 2014; Maslach et al., 2001; Maslach and Goldberg, 1998). Individual-level strategies are typically created to lessen employee indicators of job burnout that are already beginning to surface. Maslach and Goldberg (1998) listed various personal suggestions for preventing job burnout, such as altering work habits (e.g., working fewer hours and taking more breaks), learning coping mechanisms (e.g., time management), and obtaining social resources (from coworkers, managers, and family members), which focuses on the employee's relationship with work. The use of relaxation techniques, encouraging good health, and self-analysis (sounder self-understanding) are some suggestions that are made with the goal of helping the person become more resilient to job pressures. (Maslach and Goldberg, 1998. p. 67).Le Blanc and Schaufeli (2008) include relaxation techniques, cognitive-behavioral techniques (CBT), and advocating healthy lifestyles as other often utilised individual treatments to lessen the negative effects of burnout. The majority of individual strategy research are well established, claim the authors, (Le Blanc and Schaufeli, 2008). For instance, Van Rhenen et al. (2005) looked at the short- and long-term efficacy of two intervention programmes among a sample of 396 Dutch telecom workers. The first treatment was a physical intervention plan that aimed to integrate exercise and relaxation into routine job activities, while the second was a programme with a cognition-focused goal of reshaping illogical beliefs. In the short term and at the 6-month follow-up study, the research indicated that both types of intervention programmes reduced burnout levels. (Rhenen et al., 2005). Schaufeli and Salanova (2010) examined whether a self-efficacy-based intervention could reduce burnout in three groups of university students: those who were participating, those who were under stress, and those who were in good health. The findings revealed a reduction in burnout levels in the stressed and experienced groups, but no discernible reduction was seen in the healthy group during the course of the 6-month follow-up study. (Schaufeli and Salanova, 2010). Page | 1285 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 The most efficient way to prevent or treat job burnout, according to Maslach and Goldberg (1998) and Le Blanc and Schaufeli (2008), is likely to involve integrating individual and organisational intervention measures. (Le Blanc and Schaufeli, 2008; Maslach and Goldberg, 1998). The majority of studies on job burnout, however, have mostly concentrated on individualised strategies. This is in contrast to the majority of studies, which have revealed that institutional variables play a more substantial impact in burnout than individual ones, according to Maslach et al. (2001). (Maslach et al., 2001). This is predicated on the idea that altering an organisation is more difficult and expensive than altering an individual. (Maslach et al., 2001; Maslach and Goldberg, 1998).Nevertheless, due to the negative impacts linked with burnout, there is a growing understanding that decreasing or eliminating it in the workplace is crucial. (Schaufeli and Buunk, 2003). The fundamental premise that job burnout intensifies as a result of the mismatch or imbalance between the employees and the six organisational factors— overload, control, reward, community, fairness, and values—was covered before in the section on "the causes of job burnout." Therefore, closing the gap between employees and six jobrelated sectors can aid in preventing or lowering burnout. Maslach and Goldberg (1998) claim that this strategy places more emphasis on the interaction between employees and job domains than on either one alone. Additionally, it broadens the selection of organisational intervention choices. (Maslach and Goldberg, 1998). For instance, Dunn et al. (2007) evaluated the success of the corporate intervention programme's goal of increasing the well-being of doctors working in the Legacy Clinic in Portland, Oregon, over the course of five years. The intervention programme's main goals were to increase physician control over the workplace, advance clinic workflow, and deepen the meaning that doctors derive from their work. The assessments led to an improvement in the burnout ineffectiveness and emotional tiredness dimensions. (Dunn et al., 2007).Gregory et al. (2018) also looked at how primary care workers' degrees of burnout changed both before and after a workload-focused organisational-level intervention programme was put in place. The workload intervention program, according to the study, resulted in a decrease in the emotional tiredness and depersonalization component of burnout. (Gregory et al., 2018). Additionally, Le Blanc et al. (2007) evaluated the results of intervention programmes (team-based), which were aimed at enhancing 29 oncology staff members' job control, communication, social support, and coping skills. The studies revealed that the oncology personnel had lower degrees of depersonalization and emotional weariness. (Le Blanc et al., 2007). Page | 1286 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 Before and after a 6-month intervention, Leiter et al. (2011) assessed the impact of an initiative aimed at improving workplace civility among healthcare professionals. According to the study, the intervention programme caused the intervention group's cynicism and weariness to decline. (Leiter et al., 2011). The scientists looked at whether the intervention's effect persisted after a year in a follow-up research. The study concluded that the civility intervention's results were long-lasting. (Leiter et al., 2012). Maslach et al. (2011) claim that this data supports the idea that fostering better community connections inside the workplace is crucial for reducing job burnout. (Maslach et al., 2012).According to the preliminary studies, we may infer that there aren't many studies focused on organisational intervention tactics because they are more costly and time-consuming. The Measurement of Burnout 1. The Maslach Burnout Inventory MBI The Maslach Burnout Inventory (MBI; Maslach and Jackson, 1981), which was first established in the early 1980s as an attempt to quantify the three dimensions: emotional exhaustion (EE), depersonalization (DP), and personal accomplishment (PA), is the most commonly used tool for assessing occupational burnout. (Maslach and Jackson, 1981). The MBI is regarded as one of the earliest burnout measurements that was scientifically confirmed and as the most widely used instrument to assess burnout. (Bria et al., 2014; Halbesleben and Buckley, 2004; Maslach et al., 2001; Schaufeli et al., 2016; Shirom et al., 2005; Shirom and Melamed, 2005). The Maslach Burnout Inventory now comes in three different forms: MBI-human services survey (MBI-HSS), MBI-educators survey (MBI-ES), and MBI-general survey (MBI-GS). (Bria et al., 2014; Maslach et al., 2001). The MBI-human services survey (MBI-HSS), the original form of the MBI, was created to measure burnout among human service professionals, such as nurses, social workers, therapists, police, and clergy. (Maslach et al., 2008; Maslach and Jackson, 1981). Based on a sample of human service workers, Maslach and Jackson (1981) obtained reliability coefficients for emotional exhaustion of 0.90, depersonalization of 0.79, and personal accomplishment of 0.71 for the MBI-HSS. (Maslach and Jackson, 1981). In a sample of 151 registered nurses, Beckstead (2002) reported reliability values of 0.88, 0.80, and 0.75 for emotional weariness, depersonalization, and personal accomplishment. (Beckstead, 2002). Page | 1287 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 The MBI-educators survey (MBI-ES), the second iteration of the inventory, was created to gauge burnout among personnel employed in any educational institution. (Maslach and Jackson, 1981). The reason for this version of MBI, according to Maslach et al. (1996), is the large number of studies devoted to the teaching profession and the growing interest in teacher burnout. The MBI-ES and MBI-HSS are identical; the only variation between the two inventories is that "recipient" has been replaced with "student" in some items. (Maslach et al., 1997). The EE (9 items), DP (5 items), and PA (8 items) comprise the 22 statements of jobrelated sentiments assessed by the MBI-HSS and MBI-ES. (Maslach and Jackson, 1981). Iwanicki and Schwab (1981) supported the three-factor structure of the MBI-ES and reported reliability estimates of 0.90 for emotional exhaustion, 0.76 for depersonalization, and 0.76 for personal accomplishment in a sample of instructors. (Iwanicki and Schwab, 1981). The MBI-general survey (MBIGS), the third iteration of the inventory, was created to be utilised with workers outside of human services and education, including those in customer service, manufacturing, management, and most other professions. (Maslach et al., 1997). The MBI-GS, in contrast to the other variants, emphasises work and interpersonal interactions. (Maslach et al., 2008). Compared to earlier iterations, the MBI-GS is now the most often used model for measuring burnout since it is shorter and applicable to fields other than education and social services. (Bria et al., 2014). The 16 items on the MBI-GS are graded on a 6-point frequency scale, from never to daily. (Maslach and Leiter, 2008. p. 504). The three subscales included by the inventory correspond to those of the MBI-HSS and MBI-ES: (1) The emotional weariness (5 items): Without specifically mentioning the service beneficiaries, this category includes both physical and emotional exhaustion. (2) Cynicism (5 items): The most altered component, reflecting a callous or indifferent attitude towards the work. (3) Workplace Effectiveness (6 items): Were modified to place more emphasis on the individual examples of achievement in action. (Maslach et al., 1997, 2008; Upadyaya et al., 2016).Burnout is indicated by high scores on the emotional exhaustion and cynicism scales and poor scores on professional efficacy. Contrarily, high ratings on the third dimension and low ratings on the first two dimensions indicate increased engagement. (Maslach and Leiter, 2008). So instead of being classified as "burning" or "not burning," a person is instead positioned on a continuum from "more burned" to "less burned." (Iwanicki and Schwab, 1981). Leiter and Schaufeli (1996) confirmed the three-factor structure for the MBI-GS over various professional groups in healthcare settings with regard to the validity of the MBI-GS. (Leiter and Schaufeli, 1996). Similar to this, Bakker et al. (2002) investigated the MBI-GS' factorial Page | 1288 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 validity on a sample of 2919 workers from eight different professions. (e.g., managers and sales officers). The research supported the three-factor MBI-GS structure across the eight distinct professions. (Bakker et al., 2002). Bria et al. (2014) conducted a survey with a sample of 1190 Romanian healthcare professionals, and they also established the three-factor structure of the MBI-GS's invariance. (Bria et al., 2014).The same results were obtained by Langballe et al. (2006) using a sample of 5024 workers in eight different occupational settings, by Kitaokahigashiguchi et al. (2004) using a sample of 696 manufacturing managers who completed the MBI-GS in Japanese, by Qiao and Schaufeli (2010), and by Langballe et al. (2006) using a sample of 5024 workers. (Schutte and Schaufeli, 2000; Shirom and Melamed, 2006). 2. The Burnout Measure BM The Burnout Measure (BM; Pines and Aronson, 1988) is the second-most popular self-report burnout measure, behind the MBI. (Enzmann et al., 1998; Langballe et al., 2006; Pines, 2003, 2005; Schaufeli et al., 2016). To measure the key component of burnout, "exhaustion," the (BM) was created by Pines and Aronson in 1988 (Pines, 2005), and it may be used to all jobs. (Qiao and Schaufeli, 2010). The instrument consists of 21 items that are separated into three categories of tiredness (physical, emotional, and mental exhaustion), with 17 of the items having negative wording and the remaining items having positive wording. (Pines, 2005; Pines and Aronson, 1988; Schaufeli et al., 2016). The BM was scored on a seven-point frequency scale, with 0 denoting "never" and 6 denoting "every day." Four on average indicates burnout (Pines, 2003).In response to the demands of academics and practitioners for a simple-to-use tool, less questionnaire space, and less time for handling and scoring, Pines produced a shorter and simpler version of the BM, the (BMS), in 2005. The 21-item BM contextual principle was used to arrange the 10-item BMS, which measures an individual's levels of physical, temperamental, and psychic weariness. The BMS evaluated on a range of one "never" to seven "always" on a seven-point frequency scale. (Pines, 2005). Regarding the reliability of the BM, the three-factor structure of the MB was validated by Enzmann et al. (1998), Qiao and Schaufeli (2010), Schaufeli et al. (2016), and Schaufeli and Dierendonck (1993). 3. The Oldenburg Burnout Inventory OLBI To address the psychometric flaw of the MBI and the MBI-GS, Demerouti et al. (2003) hired and offered novel construct dependability of the Oldenburg Burnout Inventory (OLBI1). (Demerouti et al., 2003). All questions on the weariness and cynicism scale are worded Page | 1289 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 negatively, and the professional efficacy components are stated positively, according to Demerouti et al.'s (2001) analysis of the three subscales of the MBI. (Demerouti et al., 2001). The OLBI, in contrast, has questions with symmetrical confirming and dissentient wording. (Demerouti et al., 2010; Halbesleben and Demerouti, 2005). Exhaustion and disengagement from work are the two elements of the Oldenburg burnout inventory. (Demerouti et al., 2003). The exhaustion dimension includes both physical and mental components of weariness in addition to the affective dimensions of fatigue as measured by the MBI and MBI-GS. (Demerouti et al., 2003; Halbesleben and Demerouti, 2005). The OLBI comprises eight items per subscale, with each subscale having quaternary questions with positive and negative wording. Additionally, each subscale offers quadruplet response choices, ranging from 1 (completely disagree) to 4 (absolutely agree). (Halbesleben and Demerouti, 2005; Peterson et al., 2008). Demerouti et al. (2003) examined the factorial and merging rigour of the OLBI and the MBIGS among 232 employees from different professional groups in order to determine the validity of the OLBI. The three-factor MBI-GS structure and the two-factor OLBI structure were supported by the study. (Demerouti et al., 2003). In two samples of 2599 employees, Halbesleben and Demerouti (2005) also looked at the validity and reliability of the OLBI as a substitute for the MBI. The OLBI's English version was used by the authors. The study tested the factorial, discriminant, and convergent validity of the OLBI in the two samples and reported a satisfactory internal consistency of the OLBI with Cronbach's alpha values ranging from 0.74 to 0.84. (Halbesleben and Demerouti, 2005). Similar to this, 560 German students, 303 Greek students, and 385 German nurses made up the three separate samples used by Reis et al. (2015) to examine the factor structure of the OLBI. The research supported the two-factor design of the OLBI for each sample and confirmed the internal consistency of the German and Greek student versions of the instrument. (Reis et al., 2015). Summary And Conclusion Job burnout can be characterised as a subconscious disorder brought on by accumulated workrelated stress, and it can have a variety of detrimental effects on both the individuals and the company. Maslach et al. (2001) identified three characteristics of job burnout: tiredness, cynicism, and professional inefficacy. However, tiredness is the first dimension to manifest, followed by cynicism as a reaction to the fatigue. Each component of job burnout is interconnected with the other two, and one often leads to the other. The onset of job burnout is Page | 1290 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 influenced by a number of organisational and individual risk factors, including overwork and neuroticism. Burnout at work has several negative effects on both the organisation and its personnel. Employee turnover, absenteeism, and subpar job performance are all proven to be associated with employee burnout at the organisational level. Numerous studies have demonstrated that burnout is linked to physical and mental health issues such headaches, type 2 diabetes, cardiovascular issues, sleeplessness, melancholy, and anxiety. Two different types of intervention methods have been identified in the literature: those aimed at changing the individual at the individual level and those aimed at changing the organisational structure at the organisational level. We went over the most popular and significant burnout measurements in the last section. (e.g., MBI-GS, BMS, OLBI). The Maslach Burnout Inventory (MBI) and (MBI-GS) are among the tools frequently used to gauge employee burnout. However, other academics claim that the MBI has significant drawbacks, such as the fact that all of its elements are stated in a single direction. (Demerouti et al., 2010). To address the MBI shortcoming, the Oldenburg Burnout Inventory (OLBI) was created as a substitute assessment. References 1. Ahola, K., Hakanen, J. (2007), Job strain, burnout, and depressive symptoms: Aprospective study among dentists. Affective Disorders, 104(1-3), 103-110. 2. Ahola, K., Salminen, S., Toppinen-Tanner, S., Koskinen, A. (2013), Occupational burnout and severe injuries : An eight-year prospective cohort study among finnish forest industry workers. Occupational Health, 55(6), 450-457. 3. Ahola, K., Väänänen, A., Koskinen, A., Kouvonen, A., Shirom, A. (2010), Burnout as a predictor of all-cause mortality among industrial employees : A 10-year prospective register-linkage study. Psychosomatic Research, 69(1), 51-57. 4. Appels, A., Schouten, E. (1991), Burnout as a risk factor for coronary heart. Behavioral Medicine, 17(2), 53-259. 5. Armon, G. (2009), Do burnout and insomnia predict each other’ s levels of change over time independently of the job demand control-support (JDC-S) model ? Stress and Health, 25(4), 333-342. Page | 1291 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 6. Armon, G., Shirom, A., Shapira, I., Melamed, S. (2008), On the nature of burnoutinsomnia relationships : A prospective study of employed adults. Psychosomatic Research, 65(1), 5-12. 7. Awa, W.L., Plaumann, M., Walter, U. (2010), Burnout prevention : A review of intervention programs. Patient Education and Counseling, 78(2), 184-190. 8. Bakker, A.B., Demerouti, E., De Boer, E., Schaufeli, W.B. (2003), Job demands and job resources as predictors of absence duration and frequency. Vocational Behavior, 62(2), 341-356. 9. Bakker, A.B., Demerouti, E., Schaufeli, W.B. (2002), Validation of the Maslach burnout inventory-general survey: An internet study. Anxiety Stress and Coping, 15(3), 245-260. 10. Bakker, A.B., Demerouti, E., Verbeke, W. (2004), Using the job demandsresources model to predict burnout and performance. Human Resource Management, 43(1), 83104. 11. Bakker, A.B., Le Blanc, P.M., Schaufeli, W.B. (2005), Burnout contagion among intensive care nurses. Advanced Nursing, 51(3), 276-287. 12. Bakker, A.B., Schaufeli, W.B., Bosveld, W. (2001), Contagion burnout contagion among general practitioners. Social and Clinical Psychology, 20(1), 82-98. 13. Beckstead, J.W. (2002), Confirmatory factor analysis of the Maslach burnout inventory among Florida nurses. Nursing Studies, 39(8), 785-792. 14. Bianchi, R. (2018), Burnout is more strongly linked to neuroticism than to workcontextualized factors. Psychiatry Research, 270, 901-905. 15. Bilge, F. (2006), Examining the burnout of academics in relation to job satisfaction and other factors. Social Behavior and Personality: An International, 34(9), 1151-1160. 16. Borritz, M., Rugulies, R., Christensen, K.B., Villadsen, E., Kristensen,T.S. (2006), Burnout as a predictor of self-reported sickness absence among human service workers: Prospective findings from three year follow up of the PUMA study. Occupational and Environmental Medicine, 63(3), 98-107. 17. Bria, M., Spânu, F., Bəban, A., Dumitraşcu, D.L. (2014), Maslach burnout inventory general survey factorial validity and invariance among romanian health care professionals. Burnout Research, 1(3), 103-111. 18. Burke, R.J., Deszca, E. (1986), Correlates of psychological burnout phases among police officers. Human Relations, 39(6), 787-501. Page | 1292 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 19. Cordes, C.L., Dougherty, T.W. (1993), A review and an integration of research on job burnout. Academy of Management Review, 18(4), 621-656. 20. Demerouti, E., Bakker, A.B., Schaufeli, W.B. (2001), The job demandsresources model of burnout. Applied Psychology, 86(3), 499-512. 21. Demerouti, E., Bakker, A.B., Vardakou, I., Kantas, A. (2003), The convergent validity of two burnout instruments. European Journalof Psychological Assessment, 19(1), 1223. 22. Demerouti, E., Mostert, K., Bakker, A.B. (2010), Burnout and work engagement : A thorough investigation of the independency of both constructs. Occupational Health Psychology, 15(3), 209-222. 23. Dunn, P.M., Arnetz, B.B., Christensen, J.F., Homer, L. (2007), Meeting the imperative to improve physician well-being: Assessment of an innovative program. General Internal Medicine, 22(11), 1544-1552. 24. Enzmann, D., Schaufeli, W.B., Janssen, P., Rozeman, A. (1998), Dimensionality and validity of the burnout measure. Occupational and Oqani Tational Psychology, 71(4), 331-351. 25. Freudenberger, H.J. (1974), Staff burn‐out. Social Issues, 30(1), 159-165. 26. Freudenberger, H.J. (1977), Speaking from experience. Training and Development Journal, 31(7), 26-28. 27. Ghorpade, J., Lackritz, J., Singh, G. (2007), Burnout and personality: Evidence from academia. Career Assessment, 15(2), 240-256. 28. González-Morales, M.G., Peiró, J.M., Rodríguez, I., Bliese, P.D. (2012), Anxiety, stress coping : An perceived collective burnout : A multilevel explanation of burnout. Anxiety Stress and Coping, 25(1), 43-61. 29. Gregory, S.T., Menser, T., Gregory, B.T. (2018), An organizational intervention to reduce physician burnout. Healthcare Management From, 63(5), 352-353. 30. Grossi, G., Thomtén, J., Fandiño-Losada, A., Soares, J.J.F., Sundin, Ö. (2009), Does burnout predict changes in pain experiences among women living in Sweden? A longitudinal study. Stress and Health Stress, 25(4), 297-311. 31. Halbesleben, J.R.B., Buckley, M.R. (2004), Burnout in organizational life. Management, 30(6), 859-879. Page | 1293 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 32. Halbesleben, J.R.B., Demerouti, E. (2005), The construct validity of an alternative measure of burnout : Investigating the English translation of the oldenburg burnout inventory. Work and Stress, 19(3), 208-220. 33. Iwanicki, E.F., Schwab, R.L. (1981), A cross validation study of the Maslach burnout inventory. Educational and Psychological Measurement, 41(4), 1167-1174. 34. Jackson, S.E., Schwab, R.L., Schuler, R.S. (1986), Toward an understanding of the burnout phenomenon. Applied Psychology, 71(4), 630-640. 35. Keijsers, G.J., Schaufeli, W.B., Le Blanc, P.M., Zwerts, C., Miranda, D.R. (1995), Performance and burnout in intensive care units. Work Health and Organisations, 9(4), 513-527. 36. Kitaoka-Higashiguchi, K., Nakagawa, H., Morikawa, Y., Ishizaki, M., Miura, K., Naruse, Y., Kido, T. (2004), Construct validity of the Maslach burnout inventorygeneral survey. Stress and Health, 260(5), 255-260. 37. Kobasa, S.C. (1979), Stressful life events, personality, and health: An inquiry into hardiness. Personality and Social Psychology, 37(1), 1-11. 38. Kobasa, S.C., Maddi, S.R., Kahn, S. (1982), Hardiness and health: A prospective study. Personality and Social Psychology, 42(1), 168-177. 39. Langballe, E.M., Falkum, E., Innstrand, S.T., Aasland, O.G. (2006), The factorial validity of the Maslach burnout inventory-general survey in representative samples of eight different occupational groups. Career Assessment, 14(3), 370-384. 40. Le Blanc, P.M., Hox, J.J., Schaufeli, W.B., Peeters, M.C.W. (2007), Take care! The evaluation of a team-based burnout intervention program for oncology care providers. Applied Psychology, 92(1), 213-227. 41. Le Blanc, P.M., Schaufeli, W.B. (2008), Burnout interventions: An overview and illustration. In: Halbesleben, J.R.B., editor. Handbook of Stress and Burnout in Health Care. New York, United States: Nova Science. p201-215. 42. Leiter, M.P., Day, A., Oore, D.G., Laschinger, H.K.S. (2011), The impact of civility interventions on employee social behavior, distress, and attitudes. Applied Psychology, 96(6), 1258-1274. 43. Maslach, C., Jackson, S.E., Leiter, M.P. (1997), Maslach burnout inventory. In: Zalaquett, C.P., Wood, R.J., editors. Evaluating Stress: A Book of Resources. 3rd ed. United States: Scarecrow Education. p191-218. Page | 1294 International Journal of Interdisciplinary Organizational Studies ISSN: 2324-7649 (Print) ISSN: 2324-7657 (Online) Volume 18 No. 1, 2023 44. Maslach, C., Leiter, M.P. (2008), Early predictors of job burnout and engagement. Applied Psychology, 93(3), 498-512. 45. Maslach, C., Leiter, M.P. (2016a), Burnout. In: Fink, G., editor. Stress: Concepts, Cognition, Emotion, and Behavior. Amsterdam, Netherlands: Elsevier Science. p351357. 46. Maslach, C., Leiter, M.P. (2016b), Understanding the burnout experience: Recent research and its implications for psychiatry. World Psychiatry, 15(2), 103-111. 47. Reis, D., Xanthopoulou, D., Tsaousis, I. (2015), Measuring job and academic burnout with the Oldenburg burnout inventory (OLBI): Factorial invariance across samples and countries. Burnout Research, 2(1), 8-18. 48. Rotter, J.B. (1966), Generalized expectancies for internal versus external control of reinforcement. Psychological Monographs: General and Applied, 80(1), 1-28. 49. Schaufeli, W.B. (2003), Past performance and future perspectives of burnout research. Industrial Psychology, 29(4), 1-15. 50. Schaufeli, W.B. (2017), Burnout: A short socio-cultural history. In: Necke, S., Schaffner, A.K., Wagner, G., editors. Burnout, Fatigue, Exhaustion. Basel, Switzerland: Springer International Publishing. p105-127. 51. Toker, S., Melamed, S., Berliner, S., Zeltser, D., Shapira, I. (2012), Burnout and risk of coronary heart disease: A prospective study of 8838 employees. Psychosomatic Medicine, 74(8), 840-847. 52. Upadyaya, K., Vartiainen, M., Salmela-Aro, K. (2016), From job demands and resources to work engagement, burnout, life satisfaction, depressive symptoms, and occupational health. Burnout Research, 3(4), 101-108. 53. Valcour, M. (2016), Beating burnout. Harvard Business Review, 94(11), 98-102. 54. Yirik, S., Ören, D., Ekici, R. (2015), Determination of organizational stress and organizational burnout levels of mid-level managers working in four- and five-star hotel businesses. International Review of Management and Marketing, 5(2), 52-60. 55. Zhou, L., Yong, L., Danling, L. (2014), The mediating role of job burnout in the relationship between role conflict and job performance: An empirical research of hotel frontline service employees in China. International Journal of Psychological Studies, 6(3), 88-95. Page | 1295
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A methodological framework for the improved use of routine health system data to evaluate national malaria control programs: evidence from Zambia
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* Correspondence: bennetta@globalhealth.ucsf.edu 1Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, 550 16th St, San Francisco, CA 94143, USA 2Center for Applied Malaria Research and Evaluation, Tulane University of Public Health and Tropical Medicine, 1440 Canal St., Suite 2200, New Orleans, LA 70112, USA Full list of author information is available at the end of the article A methodological framework for the improved use of routine health system data to evaluate national malaria control programs: evidence from Zambia Adam Bennett1,2*, Joshua Yukich2, John M Miller3, Penelope Vounatsou4,5, Busiku Hamainza6, Mercy M Ingwe6, Hawela B Moonga6, Mulakwo Kamuliwo6, Joseph Keating2, Thomas A Smith4,5, Richard W Steketee3 and Thomas P Eisele2 © 2014 Bennett et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 RESEARCH Open Access A methodological framework for the improved use of routine health system data to evaluate national malaria control programs: evidence from Zambia Introduction achieved national-level access to rapid diagnostic tests (RDTs) and has invested substantial resources at improv- ing HMIS malaria data collection and reporting. As a re- sult, Zambia provides an example where prevalence was historically high, but effective control has achieved an en- vironment of intervention-suppressed transmission, and confirmed case data from HMIS are increasingly available in addition to survey prevalence data to measure trends in the malaria burden. However, because of the recent scale- up of RDTs and improved health access, use of HMIS case incidence to evaluate malaria program performance must account for improving diagnostic confirmation, HMIS reporting, and access to health services, or results could erroneously suggest the malaria burden is getting worse as malaria control interventions are scaled up. As countries in sub-Saharan Africa (SSA) continue to scale up malaria control interventions with many moving toward elimination, rigorous evaluations are needed to en- sure national programs are achieving desired impacts on malaria burden. While repeated national household sur- veys remain important for monitoring trends in popula- tion intervention coverage, their usefulness for assessing trends in the malaria burden will be limited in countries achieving low parasite prevalence where impractically large sample sizes are required to assess changes over time and across subnational areas [1]. As such, the use of rou- tine health system data on malaria cases and deaths will become increasingly important for impact evaluation pur- poses. However, because of the known biases of routine malaria incidence data measured through health manage- ment information systems (HMIS) [2], these data have rarely been used to provide rigorous evidence of program effectiveness for decision-making in Africa [3]. Here we present results from a district-level evaluation design that was used to assess the dose–response rela- tionship between ITN program intensity and HMIS- derived confirmed malaria case incidence in Zambia be- tween 2009 and 2011. In doing so, we present a novel framework for rigorously evaluating full-coverage malaria programs, as well as child survival programs in general, that rely on imperfect HMIS data, by controlling for vari- ability in diagnostic procedures, completeness of report- ing, access and demand for health services, and climate, while accounting for the inherent correlation of these types of data across time and space. Introduction Although time series HMIS data have been used for so- phisticated climate modeling and early warning systems [4], to date most uses of HMIS data for program evalu- ation in Africa have been simple comparisons of pre- and post-intervention trends in rates of malaria case incidence and deaths [5]. Only in rare cases have such studies dir- ectly controlled for important confounding factors, includ- ing changing diagnostic confirmation practices, access and use of health services, HMIS completeness, and rainfall and temperature, all of which likely lead to biased findings of program effectiveness [2,6]. Abstract Background: Due to challenges in laboratory confirmation, reporting completeness, timeliness, and health access, routine incidence data from health management information systems (HMIS) have rarely been used for the rigorous evaluation of malaria control program scale-up in Africa. Methods: We used data from the Zambia HMIS for 2009–2011, a period of rapid diagnostic and reporting scale-up, to evaluate the association between insecticide-treated net (ITN) program intensity and district-level monthly confirmed outpatient malaria incidence using a dose–response national platform approach with district-time units as the unit of analysis. A Bayesian geostatistical model was employed to estimate longitudinal district-level ITN coverage from household survey and programmatic data, and a conditional autoregressive model (CAR) was used to impute missing HMIS data. The association between confirmed malaria case incidence and ITN program intensity was modeled while controlling for known confounding factors, including climate variability, reporting, testing, treatment-seeking, and access to health care, and additionally accounting for spatial and temporal autocorrelation. Results: An increase in district level ITN coverage of one ITN per household was associated with an estimated 27% reduction in confirmed case incidence overall (incidence rate ratio (IRR): 0 · 73, 95% Bayesian Credible Interval (BCI): 0 · 65–0 · 81), and a 41% reduction in areas of lower malaria burden. Conclusions: When improved through comprehensive parasitologically confirmed case reporting, HMIS data can become a valuable tool for evaluating malaria program scale-up. Using this approach we provide further evidence that increased ITN coverage is associated with decreased malaria morbidity and use of health services for malaria illness in Zambia. These methods and results are broadly relevant for malaria program evaluations currently ongoing in sub-Saharan Africa, especially as routine confirmed case data improve. Keywords: Malaria, Evaluation, Integrated Nested Laplace Approximation (INLA), Insecticide-treated nets, Health management information systems (HMIS) Page 2 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Methods Study site In addition, a particular issue with evaluating the impact of national malaria control programs is that they normally attempt to cover all at-risk populations with interventions, which precludes the availability of a contemporaneous control group. This challenge of evaluating full-coverage programs is by no means unique to malaria or public health. As a possible solution to this challenge, Victora and colleagues (2011) proposed an evolution in evaluation design for large-scale health programs that uses the dis- trict as the unit of analysis to test for a dose–response re- lationship between program inputs (or coverage) and health outcomes, referred to by the authors as a national platform analysis [7]. Graves and colleagues (2008) pre- viously used such an approach in their evaluation of vector control scale-up in Eritrea on the outcome of HMIS-derived malaria case incidence, while accounting for climate variability [8]. However, while their study is a significant advancement over simple analysis of HMIS trends over time, they did not account for malaria diagno- sis practices, health services access, treatment-seeking, and spatial and other unobserved correlations in the data. Z bi h f ll l d i i id d y Zambia has been scaling up coverage of long-lasting ITNs (LLINs), indoor residual spraying (IRS), prompt and effective treatment with artemisinin-combination therapies (ACTs), and diagnosis at point-of-care with RDTs since 2006 [10]. The proportion of households with at least one ITN increased from 38% in 2006 to 62% in 2008 and 64% in 2010; the proportion of households receiving IRS in the past 12 months in- creased from 10% in 2006 to 15% in 2008 and 23% in 2010; [9] RDT scale-up has allowed for confirmed diagnosis at the majority of facilities nationally since 2009 [11], and the HMIS reporting system was over- hauled in 2008, which has greatly strengthened routine reporting. Zambia is divided administratively into 74 districts within 10 provinces (72 and nine for the current analysis due to an administrative separation in 2011); as of 2011, a total of 1,695 public facilities (96 hospitals, 1,352 health centers/clinics, and 247 health posts) and 35 non-governmental clinics reported into the HMIS on a monthly basis. Reporting for malaria includes clinical and confirmed outpatient cases, in- patient cases, deaths, laboratory testing, and commod- ity use. Zambia has successfully scaled up insecticide-treated mosquito nets (ITNs) since 2005, with 64% of households owning at least one as of 2010 [9]. Methods Study site Since 2009, Zambia has Page 3 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Study design and participants level per year. Bayesian geostatistical models were first used to produce estimates of ITN per person ratios from National Malaria Indicator Surveys (MIS) and IRS pro- gram enumeration efforts in 2008 and 2010 [9,13], and population-adjusted values were calculated per district (see Additional file 1: Figures S1 and S2). Bayesian gen- eralized linear models were then used to predict values of ITN per person ratios for districts and years without survey data from annual district ITN distribution data from the National Malaria Control Center (NMCC) (Additional file 1: Figure S3). The resultant district-level ITN per person ratio was multiplied by the average household size of each district in order to represent population coverage as a more programmatically useful value, the number of ITNs per household. In final re- gression models, we included this number of ITNs per household variable as an anomaly from the four-year mean for each district to control for systematic spatial effects and potentially endogenous relationships due to programmatic targeting decisions. A dose–response ecological analysis was conducted with district-months as the unit of analysis to evaluate the as- sociation between ITN program intensity and outpatient malaria case incidence. Data from the Zambia HMIS on all monthly reported confirmed and clinical (uncon- firmed) outpatient malaria cases from 2009–2011 were included. Data before 2009 were excluded as cases up to this point were reported only on a quarterly basis, a large proportion of facilities did not report, and parasito- logical confirmation was not widespread or reported. Strengthening the Reporting of Observational studies in Epidemiology (STROBE) guidelines were followed for the reporting of methods and results [12]. Primary outcomes A l d A conceptual diagram of steps taken to create all variables for analysis is provided in Figure 1, and detailed descrip- tion of data preparation is provided in Additional file 1. The primary outcomes included monthly confirmed and total (confirmed + unconfirmed) outpatient malaria cases aggregated at the district level. Before aggregating to the district level, we imputed all missing facility-level monthly outpatient malaria values based upon the spatial location of the facility and the month in which it occurred using Bayesian conditional autoregressive models. Program data on the annual numbers of structures sprayed with IRS per district were compiled to investi- gate independent effects of spraying and as a control variable. In preliminary models, we found IRS terms to be non-significant and positively associated with incidence, which likely reflects a high degree of endogeneity given that the IRS program initially targeted peri-urban areas and were scaled up in higher burden areas. As we were un- able to identify an effective instrumental variable for IRS, we only retained IRS as a control variable—calculated as Statistical analysis d For descriptive analyses, confirmed case data were stan- dardized per 1,000 population and summarized as the annual parasite index (API), which is commonly used out- side Africa [21] but only rarely used in Africa due to low case confirmation rates. Mid-year district-level population estimates were available from the 2010 housing and popu- lation census and projected for 2009 and 2011 based upon annual rates of change. We compared several Poisson and negative binomial regression models to test the association between ITN coverage per district and the primary out- comes of total and confirmed malaria outpatient cases. In all models, we used the fully imputed cases and included the log of the total district population as a measure of ex- posure in order to create population-standardized inci- dence rates. Exploratory and residual analysis revealed potential interactions by region between primary outcome and explanatory variables. In model construction we therefore assessed the inclusion of interactions between ITN coverage and transmission, as measured by mean P. falciparum parasite rate (PfPR2–10) (Malaria Atlas Project) categories (<10% vs. >10% and <25% vs. >25%), as well as between ITN coverage and high-burden/low-burden prov- ince, where high-burden provinces were those with the highest confirmed case incidence over the entire period (Luapula, Copperbelt, and Eastern provinces as defined in 2011) (Additional file 1: Figure S6). Models were fit in a Bayesian framework and computed using Integrated Nested Laplace Approximation (INLA) in R to account for unmeasured temporal and spatial correlation [22,23]. Model fit was compared using the deviance information criterion (DIC) [24], where models with the lowest DIC were chosen for final interpretation. Where uncertainty from the INLA model did not include zero, coefficients were considered significantly different than zero. As a fur- ther check on model specification, we compared the re- sults of models fit by INLA with models fit in a frequentist framework and obtained similar coefficient estimates. To estimate physical access to health care, the open source module AccessMOD 3.0 [17] was used to create smoothed raster estimates of travel time to health facil- ities by district. This estimate of facility access has been shown to correlate well with treatment-seeking for fevers from MIS data [18]. Based upon these estimates and dis- trict population rasters, we calculated the percent of each district population within two hours of a public health facility (Additional file 1: Figure S4). Statistical analysis d These values were standardized for inclusion in final regression models by subtracting the overall mean and dividing by the standard deviation. Data from the 2006, 2008, and 2010 MIS, 2007 Demo- graphic and Health Survey [19], and 2009 and 2011 ACTWatch household surveys [20] were compiled to es- timate rates of treatment-seeking for fever per district. For each district the proportion of caregivers from all six surveys who sought treatment at a public health facility for a child <5 with fever was calculated (Additional file 1: Figure S5). We examined simple kriging methods but found no difference with these cross-survey district summaries. Similar to rainfall, temperature, and health care access, district mean treatment-seeking rates were standardized to one standard deviation. Measures of primary exposure variables The primary exposure variable for this analysis was ITN coverage measured as ITNs per household at the district Figure 1 Conceptual diagram of model inputs, processes, and outputs. Figure 1 Conceptual diagram of model inputs, processes, and outputs. Page 4 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 an anomaly from the four-year district mean of the num- ber of structures sprayed in the previous year—and did not attempt to interpret independent associations with incidence. monthly malaria outpatient diagnoses over the study period). We created a similar index for testing per district- month calculated as the total number of parasitological tests (slide or RDT) reported per health facility per month divided by the sum of the total number of tests and the total number of clinical (non-confirmed) malaria cases. In cases where a confirmed case count was reported but no parasitological testing value reported (roughly 33% of all testing values), we replaced the missing testing value with the number of confirmed cases. Measures of contextual and potential confounding factors To control for climate variability over the study period, monthly climatic data were compiled from publicly available sources at the district level. Monthly mean rainfall data were obtained from the Famine Early Warn- ing System African Data Dissemination Service [14] from 2005 through 2011. Monthly mean maximum and minimum temperature and the enhanced vegetation index (EVI) were obtained from MODIS satellite data for the same period [15]. Based upon exploratory ana- lyses, EVI values were categorized as <0 · 2, 0 · 2–0 · 3, 0 · 3–0 · 4, and >0 · 4, where higher values represent greater vegetation health. Anomalies were calculated for rainfall and temperature data as the difference from each district-month value and the district mean. Rainfall and temperature anomaly values were then standardized by subtracting the respective overall mean and dividing by the standard deviation. For inclusion in regression models, various month lag terms were assessed accord- ing to previously documented lagged relationships be- tween climate variables and clinical incidence [16]. Results To evaluate reporting rates over time we created an index of the number of facilities reporting per district per month as a proportion of the total number of facilities per district, weighted by facility size (determined by mean The 2009–2011 HMIS data set included 1,693 facilities that reported at least one malaria observation, of which we were able to geo-reference with global positioning Page 5 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 systems (GPS) 1,387 (82%); the remaining 306 (18%) were matched to district. Of the 60,948 maximum pos- sible facility-month observations, there were 48,166 (79.0%) non-missing values available for total malaria cases and 38,588 (63.3%) non-missing values for con- firmed cases alone; the remaining 21.0% of total cases and 36.7% of confirmed case values were imputed. The percent of expected reports of values per year was con- sistent over the study period among health centers (2009: 84 · 7%, 2010: 85 · 1%, 2011: 84 · 2%) and hospitals (2009: 65 · 1%, 2010: 62 · 9%, 2011: 63 · 3%) but increased among health posts (2009: 54 · 4%, 2010: 67 · 1%, 2011: 77 · 4%). The mean weighted district-level reporting rate increased slightly from 81 · 1% in 2009 to 84 · 6% in 2011 but fell somewhat in some districts at the end of 2010 and 2011 (Figure 2). Consistent with the rapid scaling- up of testing and reporting with RDTs in clinics across Zambia over this period, the mean testing rate (defined as the number of tests reported divided by the sum of tests reported and clinical cases) increased dramatically over this period, from 33 · 0% in 2009 to 43 · 2% in 2010 and 67 · 6% in 2011. This increase in uptake and report- ing of testing was largely consistent across districts. Total outpatient malaria cases (clinical and confirmed) reported through the HMIS were concentrated in districts on the south-eastern border with Zimbabwe, Mozambique, and Malawi, as well as in Luapula, Northern, Copperbelt, and portions of Northwestern Provinces (Figure 3). Results After imputing missing monthly facility case values, there were 1.2 million confirmed malaria cases in 2009 (API = 99 · 8), 1 · 7 million in 2010 (API = 135 · 9), and 2 · 5 million in 2011 (API = 194 · 8). Although reported confirmed case incidence increased in most provinces from 2010 to 2011, total case incidence decreased in Southern Province and slightly in Eastern Province where incidence is highest (Figure 4). Bayesian Credible Interval (BCI): 0 · 65–0 · 81) (Table 1 and Additional file 1: Table S1). In low-burden regions, the number of ITNs per household was strongly asso- ciated with lower confirmed case incidence (IRR = 0 · 59, 95% BCI: 0 · 51–0 · 68); there was no evidence of this association in high-burden provinces (IRR = 0 · 94, 95% BCI: 0 · 79–1 · 10). Similarly, the number of ITNs per household was associated with lower total malaria case in- cidence in the overall model (IRR = 0 · 69, 95% BCI: 0 · 62–0 · 76), as well as in low-burden provinces (IRR = 0 · 53, 95% BCI: 0 · 46–0 · 62), but not in high-burden provinces (IRR = 0 · 93, 95% BCI: 0 · 81–1 · 10). District-level ITN coverage, as measured by the number of ITNs per household, increased from 1 · 25 in 2009 to 1 · 34 in 2010 but fell slightly in 2011 to 1 · 28. District- level ITN coverage and confirmed malaria case incidence showed great variability, with some districts experiencing drops in ITN coverage associated with an increase in con- firmed case incidence and others experiencing substantial increases in ITN coverage and stable or decreasing inci- dence (Additional file 1: Figure S7). The standardized testing rate was positively associated with confirmed malaria case incidence (IRR = 1 · 22, 95% BCI: 1 · 19–1 · 25) but was negatively associated with total malaria case incidence (IRR = 0 · 87, 95% BCI: 0 · 85– 0 · 89). The standardized reporting rate was positively asso- ciated with total malaria case incidence (IRR = 1 · 07, 95% BCI: 1 · 05–1 · 09) but not with confirmed case incidence (IRR = 0 · 98, 95% BCI: 0 · 97–1 · 00). Results Coin- ciding with the progressive roll out of the new HMIS reporting system, total reported outpatient malaria cases increased from 3 · 0 million in 2009 (242 · 2 per 1,000 population) to 4.1 million in 2010 (322 · 8 per 1,000 popu- lation) and 4 · 3 million in 2011 (327 · 5 per 1,000 popula- tion). After imputing missing monthly facility case values, there were an estimated 3 · 4 million outpatient malaria cases in 2009 (277 · 4 per 1,000 population), 4 · 6 million in 2010 (360 · 0 per 1,000 population), and 4 · 7 million in 2011 (361 · 9 per 1,000 population). Coinciding with the scale-up of diagnostic testing for malaria confirmation, confirmed outpatient malaria cases reported through the Figure 2 Mean weighted reporting rate and mean testing rate (defined as the number of tests reported divided by the sum of tests reported and clinical cases) by district for 2009, 2010, and 2011, Zambia. Figure 2 Mean weighted reporting rate and mean testing rate (defined as the number of tests reported divided by the sum of tests reported and clinical cases) by district for 2009, 2010, and 2011, Zambia. Figure 2 Mean weighted reporting rate and mean testing rate (defined as the number of tests reported divided reported and clinical cases) by district for 2009, 2010, and 2011, Zambia. Figure 2 Mean weighted reporting rate and mean testing rate (defined as the number of tests reported divided by the sum of tests reported and clinical cases) by district for 2009, 2010, and 2011, Zambia. Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Page 6 of 11 Figure 3 (1) Annual confirmed outpatient cases by facility and (2) annual parasite index (API) by district after imputing missing facility- month values, three-year average 2009–2011, Zambia. Figure 3 (1) Annual confirmed outpatient cases by facility and (2) annual parasite index (API) by district after imputing missing facility- month values, three-year average 2009–2011, Zambia. HMIS also increased, from 871,193 cases in 2009 (API = 70 · 8 per 1,000 population) to 1 · 2 million in 2010 (API = 97 · 4) and 2 · 1 million in 2011 (API = 163 · 0). Results One-month lagged EVI was positively associated with confirmed case inci- dence (IRR = 1 · 36 comparing the highest and lowest EVI categories, 95% BCI: 1 · 22–1 · 51). The standardized per- cent of the population within two hours of a health facility was inversely associated with confirmed case incidence (IRR = 0 · 77, 95% BCI: 0 · 61–0 · 97), which likely reflects the proportion of the population in urban areas in each district. After controlling for district reporting and testing rates, the percent of the population within two hours of a health facility, mean treatment-seeking, IRS, rainfall, minimum and maximum temperature, vegetation, cal- endar month and year, and spatial and temporal auto- correlation, overall the number of ITNs per household was significantly associated with lower confirmed case incidence iIncidence rate ratio (IRR) = 0 · 73, 95% Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Page 7 of 11 Figure 4 Total (clinical + confirmed) and confirmed outpatient malaria case incidence, and total all-cause outpatient incidence, per 1,000 population by province and month, 2009–2011, Zambia. Figure 4 Total (clinical + confirmed) and confirmed outpatient malaria case incidence, and total all-cause outpatient incidence, per 1,000 population by province and month, 2009–2011, Zambia. Discussion reduction in district-level monthly confirmed case inci- dence overall and a 41% reduction in provinces with lower annual burden. This finding is largely consistent with field trials and corresponds to an average of over 300,000 fewer confirmed outpatient malaria cases per year with each additional ITN per household [25]. In this study, we used a national platform evaluation design to assess the dose–response relationship between district-level ITN program intensity and HMIS-derived confirmed malaria case incidence in Zambia between 2009 and 2011. After accounting for variability in diag- nostic procedures, completeness of reporting, and access and demand for health services, we show that increased district-level ITN coverage as measured by the number of ITNs per household is associated with lower con- firmed case incidence. Specifically, we found that an additional ITN per household was associated with a 27% This study illustrates a robust framework for mitigating many of the known biases of routine data on malaria inci- dence by controlling for important confounding factors, which is a prerequisite to achieving the high internal valid- ity required for rigorous program evaluations. Prior ana- lyses of similar routine data have often failed to control for Page 8 of 11 Bennett et al. Discussion Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Page 8 of 11 Table 1 Results of space-time negative binomial models fit using INLA, for overall models (1) and models including interaction by region (2), Zambia* Characteristic Adjusted model coefficients (IRR, 2 · 5%-97 · 5%) Confirmed cases (1) Confirmed cases (2) Total cases (1) Total cases (2) ITNs per HH (overall) 0 · 73 (0 · 65–0 · 81) 0 · 69 (0 · 62–0 · 76) ITNs per HH in low burden 0 · 59 (0 · 51–0 · 68) 0 · 53 (0 · 46–0 · 62) ITNs per HH in high burden 0 · 94 (0 · 79–1 · 10) 0 · 93 (0 · 79–1 · 10) Reporting rateŦ 0 · 99 (0 · 97–1 · 00) 0 · 98 (0 · 97–1 · 00) 1 · 07 (1 · 05–1 · 09) 1 · 07 (1 · 05–1 · 09) Testing rateŦ 1 · 22 (1 · 19–1 · 25) 1 · 22 (1 · 19–1 · 25) 0 · 87 (0 · 85–0 · 89) 0 · 87 (0 · 85–0 · 89) Percent of population within 2 hrs of public health facilityŦ 0 · 77 (0 · 60–0 · 98) 0 · 77 (0 · 61–0 · 97) 0 · 85 (0 · 67–1 · 07) 0 · 84 (0 · 67–1 · 07) Treatment-seeking rateŦ 1 · 03 (0 · 84–1 · 27) 1 · 03 (0 · 85–1 · 26) 1 · 02 (0 · 83–1 · 26) 1 · 03 (0 · 84–1 · 27) High-burden province (ref: low) 2 · 39 (1 · 27–4 · 52) 2 · 39 (1 · 31–4 · 36) 2 · 08 (1 · 13–3 · 84) 2 · 09 (1 · 13–3 · 85) IRSŦ 1 · 04 (1 · 02–1 · 06) 1 · 05 (1 · 03–1 · 06) 1 · 01 (0 · 99–1 · 02) 1 · 01 (0 · 99–1 · 03) RFE (2–3 months lag)Ŧ 0 · 99 (0 · 97–1 · 01) 0 · 99 (0 · 98–1 · 01) 0 · 99 (0 · 97–1 · 01) 0 · 99 (0 · 97–1 · 01) Max temp (2 mo. Discussion Table 1 Results of space-time negative binomial models fit using INLA, for overall models (1) and models including interaction by region (2), Zambia* ce-time negative binomial models fit using INLA, for overall models (1) and models including (2) Z bi * *models include calendar month dummy covariates Ŧcovariates are standardized so that a one-unit change represents one standard deviation INLA = Integrated Nested Laplace Approximation; IRR = incidence rate ratio; ITNs = insecticide-treated nets; HH = household; IRS = indoor residual spraying; RFE = rainfall estimate; EVI = enhanced vegetation index; DIC = deviance information criterion. modeled, and the authors did not consider differences in treatment-seeking or health care access [27]. The district level (“sub-zobas” in Eritrea) analysis conducted by Graves and colleagues (2008) revealed an association between the number of ITNs distributed, IRS spraying, and clinical case incidence, but while their analysis controlled for climate fac- tors, they did not include information on parasitological case confirmation, reporting, or health facility access and treatment-seeking behavior [8]. Finally, none of these studies accounted for the inherent correlated nature of malaria case data across spatial units, which can result in erroneous find- ings of statistical significance if not accounted for, and only the Graves study accounted for temporal autocorrelation. important confounders, and many have reported on pre- sumed or clinically-diagnosed malaria cases. For example, Otten and colleagues (2009) found large reductions in the number of cases in Rwanda and Ethiopia and attributed these changes to the scale-up of malaria prevention inter- ventions [26]. Similarly, Chanda and colleagues (2012) ana- lyzed annual HMIS data summaries from a sample of districts in Zambia for 2007 and 2008 and concluded that ITNs and IRS were associated with declines in suspected malaria case incidence and deaths [5]. However, neither of these studies adequately controlled for several important confounding factors known to influence health facility inci- dence, including variations over time in climate, diagnostic practices, access to health services, treatment-seeking be- havior, and reporting completeness [2]. Bhattarai and col- leagues (2007) found decreases in health facility cases following LLIN and ACT scale-up in Zanzibar, but while climate was considered descriptively, it was not explicitly important confounders, and many have reported on pre- sumed or clinically-diagnosed malaria cases. Discussion lag)Ŧ 1 · 02 (1 · 00–1 · 04) 1 · 02 (1 · 00–1 · 04) 1 · 03 (1 · 01–1 · 05) 1 · 03 (1 · 01–1 · 05) Min temp (2 mo. lag)Ŧ 1 · 01 (0 · 99–1 · 03) 1 · 01 (0 · 99–1 · 03) 1 · 00 (0 · 98–1 · 02) 1 · 00 (0 · 99–1 · 02) EVI <0 · 2 (ref) 0 · 2–0 · 3 1 · 15 (1 · 08–1 · 21) 1 · 15 (1 · 08–1 · 21) 1 · 12 (1 · 06–1 · 19) 1 · 12 (1 · 06–1 · 19) 0 · 3–0 · 4 1 · 29 (1 · 18–1 · 40) 1 · 29 (1 · 18–1 · 41) 1 · 32 (1 · 21–1 · 44) 1 · 33 (1 · 22–1 · 45) >0 · 4 1 · 35 (1 · 22–1 · 51) 1 · 36 (1 · 22–1 · 51) 1 · 37 (1 · 23–1 · 52) 1 · 38 (1 · 24–1 · 53) Year 2009 (ref) 2010 1 · 38 (0 · 88–2 · 16) 1 · 41 (0 · 90–2 · 21) 1 · 23 (0 · 80–1 · 90) 1 · 27 (0 · 83–1 · 95) 2011 1 · 89 (0 · 82–4 · 37) 1 · 90 (0 · 83–4 · 36) 1 · 46 (0 · 66–3 · 25) 1 · 47 (0 · 66–3 · 27) DIC 38241 · 0 38225 · 8 42901 · 9 42878 · 1 N 2592 2592 2592 2592 *models include calendar month dummy covariates Ŧcovariates are standardized so that a one-unit change represents one standard deviation INLA = Integrated Nested Laplace Approximation; IRR = incidence rate ratio; ITNs = insecticide-treated nets; HH = household; IRS = indoor residual spraying; RFE = rainfall estimate; EVI = enhanced vegetation index; DIC = deviance information criterion. Discussion For example, Otten and colleagues (2009) found large reductions in the number of cases in Rwanda and Ethiopia and attributed these changes to the scale-up of malaria prevention inter- ventions [26]. Similarly, Chanda and colleagues (2012) ana- lyzed annual HMIS data summaries from a sample of districts in Zambia for 2007 and 2008 and concluded that ITNs and IRS were associated with declines in suspected malaria case incidence and deaths [5]. However, neither of these studies adequately controlled for several important confounding factors known to influence health facility inci- dence, including variations over time in climate, diagnostic practices, access to health services, treatment-seeking be- havior, and reporting completeness [2]. Bhattarai and col- leagues (2007) found decreases in health facility cases following LLIN and ACT scale-up in Zanzibar, but while climate was considered descriptively, it was not explicitly This study incorporated several recent methodological advances in spatial and spatio-temporal modeling that allow for the inclusion of complex correlation structures, as well as spatially continuous intervention and environmental information [28,29]. Similar modeling strategies have Page 9 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 increasingly been used to evaluate temporal and spatial trends in disease, seasonality, climate, and other factors but not for evaluations of program impact [30]. While the evaluation framework and accompanying statistical ana- lyses used in this study are complex, we argue that without such methods in place to account for potential biases in routine HMIS data, such data cannot be used for rigorous program evaluations to achieve meaningful and robust re- sults for program decision-making. This is significant as HMIS data become increasing available, parasite preva- lence falls in areas with high control coverage, RDTs are scaled up to allow for increased case confirmation, and as programs require better real-time data to monitor trends in confirmed cases and deaths. to control for the increase in confirmed case testing in multivariable models, our testing rate may be an imperfect indicator of the true testing rate, as reporting of testing likely improved contemporaneously with RDT scale-up, la- boratory testing values were not consistently reported, and detailed RDT stock-out data were not available. However, any remaining bias would most likely bring the estimated effect of ITNs on confirmed case incidence toward the null hypothesis of no effect. Discussion Second, potentially endogenous relationships existed be- tween our primary outcomes and explanatory variables of interest due to programmatic choices targeting high- burden or easily accessible areas. In some instances, such as the use of calendar month in the evaluation of IRS ef- fectiveness by Over and colleagues [37], instrumental vari- ables may be available to infer causal relationships when endogeneity exists. However, as no instrumental variables uncorrelated with primary outcomes were available in our data, we were not able to perform two-stage regression or similar standard econometric approaches to isolate uncor- related effects. Rather, we controlled for systematic spatial targeting of intervention effort through the use of anomal- ies in program coverage. This approach was effective for ITN coverage, as the goal is for universal coverage, and therefore targeting has been limited. However, the highly targeted nature and relatively lower coverage of the IRS program during this period, combined with the lack of confirmed case data preceding IRS scale-up, precluded our ability to make similar effective adjustments for IRS. Future use of these data will likely prove more robust for evaluat- ing IRS efforts as more areas are included and there is greater heterogeneity within districts over time. Addition- ally, we incorporated only annual ITN per household data, which may not accurately depict monthly changes in coverage. There is need for programs to more closely track monthly ITN coverage data in order to make more tem- porally refined assessments of intervention effectiveness. Our finding of a significant interaction between the num- ber of ITNs per household and low versus high incidence regions in models predicting both confirmed and all malaria outpatient cases was unexpected; while potentially related to transmission, we did not find significant interactions be- tween district ITN coverage and endemicity categories as defined by mean PfPR2–10. Mathematical models and some limited empirical evidence have suggested that the effect of increasing ITN coverage on prevalence may be greater or more rapid in areas of lower baseline transmission [25,31-33], but there is less evidence to suggest a similar re- lationship with clinical case incidence. Discussion It is possible that re- gional factors such as population movement between neighboring countries or insecticide resistance are involved, as these provinces border high burden areas in Malawi, Mozambique, and the Democratic Republic of the Congo where resistance is a known problem reducing operational effectiveness [34], and reductions in the malaria burden over a decade of scale-up have been extremely limited [35]. It is also possible that our testing and reporting rates do not fully correct for biases in diagnostic reporting practices in these high-burden areas. The increase in both confirmed and total malaria out- patient cases over the period of study is notable yet largely explained by the rapid increase in RDT testing over this period and a simultaneous increase in reporting of con- firmed cases as a new HMIS reporting system was adopted. Inter-annual climate patterns may explain some of the in- crease between 2009 and 2010, as 2010 was noted as a high transmission year in several countries in the region [36], but we found limited evidence for this effect in our models. User fee changes adopted in 2006 may have influenced health facility utilization rates broadly, but the bulk of these effects would likely have well predated our study. Finally, we were not able to incorporate ACT data in this analysis as these data were not available sub-nationally. Drug stock-outs could have influenced incidence rates, but there was no evidence to suggest systemic changes in ACT availability over this period. Additional file 5. Chanda E, Coleman M, Kleinschmidt I, Hemingway J, Hamainza B, Masaninga F, Chanda-Kapata P, Baboo KS, Dürrheim DN, Coleman M: Impact assessment of malaria vector control using routine surveillance data in Zambia: implications for monitoring and evaluation. Malar J 2012, 11:437. Additional file 1: Space-time imputation of missing facility-month cases. Figure S1. Bayesian geostatistical estimates of ITN coverage for (A) 2008 and (B) 2010, Zambia. Figure S2. Relative standard deviation (sd to mean ratio) for ITN coverage estimates for (A) 2008 and (B) 2010, Zambia. Figure S3. Population-adjusted ITN coverage estimates by district for (A) 2008, (B) 2009, (C) 2010, and (D) 2011, Zambia. Figure S4. (A) Travel time to the nearest public health facility and (B) percent of population by district within 2 hours of a public health facility, Zambia. Figure S5. Percent of children <5 with fever in the previous two weeks whose caregiver sought treatment within the public sector, by district, Zambia. Figure S6. Map of provinces of Zambia as of 2011, including those defined as high burden. Figure S7. District confirmed case incidence (red) and district ITN per HH anomalies (blue), where zero indicates that coverage remained the same as the four-year mean. Months 1-36 refer to the study period January 2009 to December 2011, Zambia. Table S1. Results of model selection for models on confirmed cases, 2009-2011 Zambia. Table S2. Results of model selection for models on total cases (confirmed + unconfirmed), 2009-2011 Zambia. 6. Victora CG, Schellenberg JA, Huicho L, Amaral J, El Arifeen S, Pariyo G, Manzi F, Scherpbier RW, Bryce J, Habicth JP: Context matters: interpreting impact findings in child survival evaluations. Health Policy Plan 2005, 20(Suppl 1):i18–i31. 7. Victora CG, Black RE, Boerma JT, Bryce J: Measuring impact in the Millennium Development Goal era and beyond: a new approach to large-scale effectiveness evaluations. Lancet 2011, 377(9759):85–95. 8. Graves PM, Osgood DE, Thomson MC, Sereke K, Araia A, Zerom M, Ceccato P, Bell M, Del Corral J, Ghebreselassie S, Brantly EP, Ghebremeskel T: Effectiveness of malaria control during changing climate conditions in Eritrea, 1998–2003. Trop Med Int Health 2008, 13(2):218–228. 9. Zambia Ministry of Health, National Malaria Control Center: Zambia National Malaria Indicator Survey 2010. Lusaka, Zambia: 2011. Available at: www.nmcc. org.zm. 10. Chizema-Kawesha E, Miller J, Steketee RW, Mukonka C, Mohamed AD, Miti SK, Campbell CC: Scaling up malaria control in Zambia: progress and impact 2005–2008. Conclusions There is increasing need to evaluate national malaria con- trol programs (and other national public health interven- tions) using routine data. In this analysis we demonstrate how subnational heterogeneity in ITN coverage can be used to assess a dose–response relationship with HMIS- derived confirmed case incidence, after controlling for im- portant confounding factors. While still an observational study design, the establishment of such a dose–response relationship helps bolster causal inference between ITN program inputs and malaria health outcomes when no There were several important limitations to our ap- proach that should be considered. First, our evaluation was limited by the short time frame of confirmed case data available for analysis, as well as potentially biased by the in- crease in reporting and testing over this period as facilities adapted to the new reporting system. While we attempted Page 10 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 true control group is available [38]. Using this approach we provide further evidence that increased coverage with ITNs is associated with decreased malaria morbidity and reduced utilization of health services for malaria illness in Zambia. 2. Rowe AK, Kachur SP, Yoon SY, Lynch M, Slutsker L, Steketee RW: Caution is required when using health facility-based data to evaluate the health impact of malaria control efforts in Africa. Malar J 2009, 8:209. 3. Gething PW, Noor AM, Goodman CA, Gikandi PW, Hay SI, Sharif SK, Atkinson PM, Snow RW: Information for decision making from imperfect national data: tracking major changes in health care use in Kenya using geostatistics. BMC Med 2007, 5:37. 4. Thomson MC, Doblas-Reyes FJ, Mason SJ, Hagedorn R, Connor SJ, Phinedela T, Morse AP, Palmer TN: Malaria early warnings based on seasonal climate forecasts from multi-model ensembles. Nature 2006, 439(7076):576–579. 4. Thomson MC, Doblas-Reyes FJ, Mason SJ, Hagedorn R, Connor SJ, Phinedela T, Morse AP, Palmer TN: Malaria early warnings based on seasonal climate forecasts from multi-model ensembles. Nature 2006, 439(7076):576–579. Competing interests Th h d l h The authors declare that they have no competing interests. 11. Yukich JO, Bennett A, Albertini A, Incardona S, Moonga H, Chisha Z, Hamainza B, Miller JM, Keating J, Eisele TP, Bell D: Reductions in artemisinin-based combin- ation therapy consumption after the nationwide scale up of routine malaria rapid diagnostic testing in Zambia. Am J Trop Med Hyg 2012, 87(3):437–446. Received: 13 October 2013 Accepted: 13 October 2014 Received: 13 October 2013 Accepted: 13 October 2014 22. Rue H, Martino S, Chopin N: Approximate Bayesian inference for latent Gaussian models using integrated nested Laplace approximations. J R Stat Soc, Series B 2009, 71(2):319–392. Authors’ contributions AB and TPE designed the study. AB led the analysis of all data, prepared all drafts of the paper, and incorporated comments by coauthors. All named authors contributed to the conceptualization and editing of the paper and approved the final version. 12. STROBE: 2007. [cited 2013 August]; Accessed online at: http://www.strobe- statement.org/fileadmin/Strobe/uploads/checklists/ STROBE_checklist_v4_cross-sectional.pdf. 13. Eisele TP, Miller JM, Moonga HB, Hamainza B, Hutchinson P, Keating J: Malaria infection and anemia prevalence in Zambia's Luangwa District: an area of near-universal insecticide-treated mosquito net coverage. Am J Trop Med Hyg 2011, 84(1):152–157. Acknowledgments Dr. Adam Bennett, Dr. Joshua Yukich, Dr. John Miller, Dr. Joseph Keating, Dr. Richard Steketee, and Dr. Thomas P. Eisele were funded by the Malaria Control and Evaluation Partnership in Africa (MACEPA), a PATH project, from funding from the Bill & Melinda Gates Foundation. Dr. Thomas A. Smith and Dr. Penelope Vounatsou were funded through a Bill & Melinda Gates Foundation project, number OPP1032350. 14. United States Geological Survey: Famine Early Warning System Network. [accessed 2011 January]; Accessed online at: http://earlywarning.usgs.gov/fews/. 15. United States Geological Survey/National Aeronautics and Space Administration: The Moderate Resolution Imaging Spectroradiometer (MODIS). [cited 2011 January]; Accessed online at: https://lpdaac.usgs.gov/products/ modis_products_table. The sponsor of the study had no role in study design, data collection, data analysis, data interpretation, or writing of the report. The corresponding author had full access to all the data in the study and had final responsibility for the decision to submit for publication. 16. Mabaso ML, Craig M, Vounatsou P, Smith T: Towards empirical description of malaria seasonality in southern Africa: the example of Zimbabwe. Trop Med Int Health 2005, 10(9):909–918. The authors wish to acknowledge Dr. Pete Gething, who provided a thoughtful review of an earlier draft of this paper. 17. World Health Organization: AccessMod 3.0. [accessed 2012 June]; Accessed online at: http://www.who.int/kms/initiatives/accessmod/en/index.html. 17. World Health Organization: AccessMod 3.0. [accessed 2012 June]; Accessed online at: http://www.who.int/kms/initiatives/accessmod/en/index.html. 18. Alegana VA, Wright JA, Pentrina U, Noor AM, Snow RW, Atikinson PM: Spatial modelling of healthcare utilisation for treatment of fever in Namibia. Int J Health Geogr 2012, 11:6. 18. Alegana VA, Wright JA, Pentrina U, Noor AM, Snow RW, Atikinson PM: Spatial modelling of healthcare utilisation for treatment of fever in Namibia. Int J Health Geogr 2012, 11:6. Additional file Am J Trop Med Hyg 2010, 83(3):480–488. Author details 1 1Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, 550 16th St, San Francisco, CA 94143, USA. 2Center for Applied Malaria Research and Evaluation, Tulane University of Public Health and Tropical Medicine, 1440 Canal St., Suite 2200, New Orleans, LA 70112, USA. 3PATH Malaria Control and Evaluation Partnership in Africa (MACEPA), Lusaka, Zambia. 4Swiss Tropical and Public Health Institute, Socinstr. 57, 4051, Basel, Switzerland. 5University of Basel, Basel, Switzerland. 6National Malaria Control Centre, Ministry of Health, Lusaka, Zambia. 19. Macro International and Central Statistics Office, Zambia: Zambia Demographic and Health Survey 2007. Calverton,MD: Macro International; 2009. Available at: www.dhsprogram.com. 20. Actwatch Group & SFH/Zambia: Zambia 2011 Household Survey Report. Washington DC: Population Services International; 2013. Available at: www. actwatch.info. 21. Camargo LM, Noronha E, Salcedo JM, Dutra AP, Krieger H, da Silva LH P, Camargo EP: The epidemiology of malaria in Rondonia (Western Amazon region, Brazil): study of a riverine population. Acta Trop 1999, 72(1):1–11. . malEra Consultative Group on Monitoring, Evaluation and Surveillance: A research agenda for malaria eradication: monitoring, evaluation, and surveillance. PLoS Med 2011, 8(1):e1000400. Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 24. Spiegelhalter DJ, Best NG, Carlin BP, Van Der Linde A: Bayesian measures of model complexity and fit. J R Stat Soc, Series B 2002, 64(4):583–639. 25. Lengeler C: Insecticide-treated bed nets and curtains for prev 25. Lengeler C: Insecticide-treated bed nets and curtains for preventing malaria. Cochrane Database Syst Rev 2004, 2:CD000363. malaria. Cochrane Database Syst Rev 2004, 2:CD000363. 26. Otten M, Aregawi M, Were W, Karema C, Medin A, Bekele W, Jima D, Gausi K, Komatsu R, Korenromp E, Low-Beer D, Grabowsky M: Initial evidence of reduction of malaria cases and deaths in Rwanda and Ethiopia due to rapid scale-up of malaria prevention and treatment. Malar J 2009, 8:14. 27. Bhattarai A, Ali S, Kachur SP, Mårtensson A, Abbas AK, Khatib R, Al-Mafazy AW, Ramsan M, Rotllant G, Gerstenmaier JF, Molteni F, Abdulla S, Montgomery SM, Kaneko A, Björkman A: Impact of artemisinin-based combination therapy and insecticide-treated nets on malaria burden in Zanzibar. PLoS Med 2007, 4(11):e309. 28. Mabaso ML, Vounatsou P, Midzi S, Da Silva J, Smith T: Spatio-temporal analysis of the role of climate in inter-annual variation of malaria incidence in Zimbabwe. Int J Health Geogr 2006, 5:20. 29. Noor AM, Alegana VA, Patil AP, Snow RW: Predicting the unmet need for biologically targeted coverage of insecticide-treated nets in Kenya. Am J Trop Med Hyg 2010, 83(4):854–860. 30. Hu W, Clements A, Williams G, Tong S, Mengersen K: Bayesian spatiotemporal analysis of socio-ecologic drivers of Ross River virus transmission in Queensland, Australia. Am J Trop Med Hyg 2010, 83(3):722–728. 31. Griffin JT, Hollingsworth TD, Okell LC, Churcher TS, White M, Hinsley W, Bousema T, Drakeley CJ, Ferguson NM, Basáñez MG, Ghani AC: Reducing Plasmodium falciparum malaria transmission in Africa: a model-based evaluation of intervention strategies. PLoS Med 2010, 7(8):e1000324. 32. Smith DL, Hay SI, Noor AM, Snow RW: Predicting changing malaria risk after expanded insecticide-treated net coverage in Africa. Trends Parasitol 2009, 25(11):511–516. 33. Chitnis N, Schapira A, Smith T, Steketee R: Comparing the effectiveness of malaria vector-control interventions through a mathematical model. Am J Trop Med Hyg 2010, 83(2):230–240. 34. Wondji CS, Coleman M, Kleinschmidt I, Mzilahowa T, Irving H, Ndula M, Rehman A, Morgan J, Barnes KG, Hemingway J: Impact of pyrethroid resistance on operational malaria control in Malawi. Proc Natl Acad Sci 2012, 109(47):19063–19070. 35. Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 Roca-Feltrer A, Kwizombe CJ, Sanjoaquin MA, Sesay SS, Faragher B, Harrison J, Geukers K, Kabuluzi S, Mathanga DP, Molyneux E, Chagomera M, Taylor T, Molyneux M, Heyderman RS: Lack of decline in childhood malaria, Malawi, 2001–2010. Emerg Infect Dis 2012, 18(2):272–278. 36. World Health Organization (WHO): World Malaria Report 2010. Geneva, Switzerland: 2010. Available at: www.who.int/malaria. 36. World Health Organization (WHO): World Malaria Report 2010. Geneva, Switzerland: 2010. Available at: www.who.int/malaria. 37. Over M, Bakote'e B, Velayudhan R, Wilikai P, Graves PM: Impregnated nets or DDT residual spraying? Field effectiveness of malaria prevention techniques in Solomon Islands, 1993–1999. Am J Trop Med Hyg 2004, 71(2 Suppl):214–223. 38. Rowe AK, Steketee RW, Arnold F, Wardlaw T, Basu S, Bakyaita N, Lama M, Winston CA, Lynch M, Cibulskis RE, Shibuya K, Ratcliffe AA, Nahlen BL, Roll Back Malaria Monitoring and Evaluation Reference Group: Viewpoint: evaluating the impact of malaria control efforts on mortality in sub-Saharan Africa. Trop Med Int Health 2007, 12(12):1524–1539. References . malEra Consultative Group on Monitoring, Evaluation and Surveillance: A research agenda for malaria eradication: monitoring, evaluation, and surveillance. PLoS Med 2011, 8(1):e1000400. 23. Martino S, Rue H: Implementing approximate Bayesian inference using integrated nested laplace approximation: a manual for the inla program (R package). [Accessed 2012 January]; Accessed online at www.r-inla.org. Page 11 of 11 Page 11 of 11 Bennett et al. Population Health Metrics 2014, 12:30 http://www.pophealthmetrics.com/content/12/1/30 doi:10.1186/s12963-014-0030-0 doi:10.1186/s12963-014-0030-0 Cite this article as: Bennett et al.: A methodological framework for the improved use of routine health system data to evaluate national malaria control programs: evidence from Zambia. Population Health Metrics 2014 12:30. Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission
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An examination of retinal findings with optical coherence tomography in hypothyroidism patients with vitamin D deficiency: A comparative study
Ķazaķstannyṇ klinikalyķ medicinasy
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Abstract Aim: This study aimed to examine the retinal layer before and after treatment in patients with hypothyroidism with vitamin D deficiency, since the vitamin also protects the retinal cells against inflammatory damage. Material and methods: The free T3, free T4, and vitamin D levels of 104 patients with no ocular disease were first measured. Ophthalmological examinations of these patients, who were divided into three groups, were performed by specialist ophthalmologists, while retinal findings were examined using optical coherence tomography (OCT) and recorded. The first group was given vitamin D for three months, the second levothyroxine, and the third vitamin D + levothyroxine. After three months repeat OCT was performed, and the results were compared with the previous values. J Clin Med Kaz 2023; 20(6):36-40 Results: The thickness of the left inner nuclear cell layer of the patients in the vitamin D group increased significantly compared to pre- treatment. Post-treatment right central macular thickness, right nerve fiber layer, right outer nuclear cell layer, right pigment epithelial layer, left central macular, and left inner nuclear cell layer thicknesses were all significantly higher compared to pre-treatment in the patients in the levothyroxine + vitamin D group, while right outer retinal layer and left retinal nerve fiber thicknesses decreased (p<0.05). i Conclusion: A greater increase in cell layer thickness was observed in the group using vitamin D and levothyroxine together compared to those in which vitamin D and levothyroxine were employed alone. However, further studies on the effect of vitamin D on retinal cell development and protection against injury are now needed. Keywords: Hashimoto’s thyroiditis, hypothyroidism, optical coherence tomography, retina, vitamin D An examination of retinal findings with optical coherence tomography in hypothyroidism patients with vitamin D deficiency: A comparative study Samet Sayilan1, Dila Kiraği2, Mehmet Tayfun Arslan3 Samet Sayilan1, Dila Kiraği2, Mehmet Tayfun Arslan3 1Department of Internal Medicine, Medicine Faculty, Kirklareli University, Kirklareli, Turkey 2Department of Ophthalmology, Faculty of Medicine, Altinbas University, Istanbul, Turkey 3Department of Ophthalmology Clinic, Kirklareli Educational and Research Hospital, Kirklareli, Turkey Received: 2023-09-17. Accepted: 2023-10-18 JOURNAL OF CLINICAL MEDICINE OF KAZAKHSTAN JOURNAL OF CLINICAL MEDICINE OF KAZAKHSTAN (E-ISSN 2313-1519) DOI: https://doi.org/10.23950/jcmk/13872 Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 Statistical analysis Significant differences were determined between the levothyroxine, Vitamin D, and levothyroxine+ Vitamin D groups’ pre-treatment Vitamin D levels (p<0.001) (Table 3). The research data were analyzed on SPSS (Statistical Package for the Social Sciences) version 23.0 software. In addition to descriptive methods such as number and percentage calculations and arithmetic mean, the Kolmogorov-Smirnov test was applied to evaluate normality of distribution. The paired t test and One-Way ANOVA (Tukey’s test for post hoc) were used to compare normally distributed variables between the groups. The results were expressed at a 95% confidence interval, with p values <0.05 being regarded as statistically significant. Retinal cell layer values before and after treatment in the study groups N i i ll i ifi i i b No statistically significant associations were observed between retinal cell layer measurements and T3 levels among the different treatment groups (p>0.005). However, T3 levels differed significantly depending on the type of treatment (p<0.001). Advanced analysis performed to identify the group in which this difference appeared revealed significantly higher T3 levels in the levothyroxine group than in the other two groups. Examination of TSH levels in terms of type of treatment revealed significantly higher values in the levothyroxine + vitamin D group compared to the levothyroxine only group. Material and methods Setting and participants One hundred four patients meeting the inclusion criteria between 01.06.2021 and 01.12.2021 were included in the study. Patients aged over 18 and meeting the inclusion criteria, with hypothyroidism and vitamin D deficiency, with no chronic disease, not receiving Vitamin D therapy, with no retinal disease, and with no corneal, lens, or vitreous opacity that might prevent OCT being performed were referred to the eye diseases clinic once their free T3, free T4, TSH, and vitamin D levels had been measured and recorded. The patients were divided into three groups, one receiving levothyroxine alone, one receiving vitamin D alone, and a third receiving combined levothyroxine and vitamin D. Routine ophthalmological examinations and visual acuity evaluations were performed by specialist ophthalmologists in the eye diseases clinic, and biomicroscopic examinations were also performed. Retinal images were than captured in a non-interventional manner using a Spectralis- OCT (Spectralis OCT, Heidelberg Engineering, Heidelberg, Germany) device in the eye diseases clinic. Ophthalmological findings and retinal layer thicknesses calculated from images obtained using an ACT device were recorded. The three groups were invited to attend check-ups after three months of treatment. Full participation was achieved, and no patient loss occurred. Retinal layer thicknesses were again recorded using OCT. Right outer retinal cell layer thicknesses in the levothyroxine group decreased significantly compare to pre-treatment. In the vitamin D group, left inner plexiform layer and left retinal nerve fiber thicknesses decreased compared to pre- treatment, while a significant increase was determined in left inner nuclear cell layer thickness compared to pre-treatment.i Significant increases were determined post-treatment in terms of right central macular thickness, right nerve fiber layer, right outer nuclear cell layer, right pigment epithelial layer, left central macular thickness, and left inner nuclear cell layer thickness compared to pre-treatment values in patients in the levothyroxine +vitamin D group, while right outer retinal layer and left retinal nerve fiber thicknesses decreased (p<0.005) (Table 2). Introduction genes (Tg and TSHR) [2]. Environmental factors include smoking, alcohol use, iodine intake through diet, stress, selenium and Vitamin D deficiency, bacterial and viral infections, pregnancy, and medications [1,2]. Although HT is generally asymptomatic, some patients describe a sensation of heat, tightness, and pain in the neck [3]. Hypothyroidism is present in approximately 20% of patients at the time of diagnosis [4]. In contrast to other vitamins, Vitamin D is regarded as a hormone since it is synthetized in the body. It is known to affect bone The most frequent cause of hypothyroidism, a disease caused by insufficient synthesis and/or release of thyroid hormones, is Hashimoto’s thyroiditis (HT). This was first described in 1912 and is the most frequently encountered autoimmune thyroiditis in the general population. The disease emerges through the interaction of environmental (30%) and genetic (70%) factors [1]. Genetic factors include immune regulator genes, major histocompatibility genes (HLA), and thyroid-specific Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 36 Table 1 The participants’ descriptive characteristics (n=104) Characteristic n % Sex Female Male 71 33 68.3 31.7 Chronic disease Yes No 35 69 33.7 66.3 Vitamin D level Severely low Moderately low 52 52 50.0 50.2 Group Levothyroxine Vitamin D Levothyroxine+Vitamin D 33 35 36 31.7 33.7 34.6 Age (Mean±SD) 48.46±11.57 (min. 22, max. 73) metabolism and Ca balance in the body. Studies have maintained that vitamin D can exhibit potentially protective effects in several human diseases, including various types of cancer, cardiovascular diseases, kidney and muscle diseases, hypertension, and type 2 diabetes mellitus [5-12]. Vitamin D exhibits neuroprotective and neuromodulatory effects, and is associated with several diseases that affect the central nervous system, such as Alzheimer’s [13].The effects on the retina of vitamin D deficiency and hypothyroidism have been investigated separately in several studies [14,15]. However, we encountered no previous studies evaluating retinal findings with optic coherence tomography (OCT) in patients with hypothyroidism accompanying vitamin D deficiency and the relationship between these findings and vitamin D deficiency. The purpose of this study was to investigate ophthalmological examination findings and retinal findings determined using optical coherence tomography, and the effect of the addition of vitamin D to hypothyroidism treatment on retinal cell layers in hypothyroid patients with vitamin D deficiency detected at the internal medicine clinic. A comparison of the patients’ pre- and post- treatment Vitamin D levels in the study groups Post-hoc analysis applied to identify the group from which the difference derived showed that pre-treatment Vitamin D levels were significantly higher in the levothyroxine group than in the other two study groups. However, no significant variation in post-treatment Vitamin D levels was observed among the groups.i Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 The participants’ descriptive characteristics The mean age of the patients in the study was 48.46±11.57 years (min 22, max 73), 68.3% were women, 33.7% had a chronic disease, and 34.6% used levothyroxine + vitamin D therapy. Fifty percent of patients had severely low vitamin D levels (Table 1). g p Vitamin D levels increased significantly after treatment compared to pre-treatment levels in the levothyroxine, Vitamin D, and levothyroxine+ Vitamin D groups (p<0.001) (Table 4). Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 The participants’ descriptive characteristics ournal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 37 Table 2 Retinal cell layer values before and after treatment in the study groups Levothyroxine groupa Mean±SD Vitamin D groupb Mean±SD Levothyroxine+ vitamin D groupc Mean±SD p* Right central macular thickness (Before) Right central macular thickness (After) p** 271.51±31.02 273.45±25.84 0,319 266.14±25.91 268.28±22.95 0.106 266.70±26.00 269.03±23.09 0.012 0.382 0.374 Right nerve fiber layers (Before) Right nerve fiber layers (After) p** 11.54±3.44 12.18±2.05 0.321 11.80±3.35 12.42±2.67 0.104 11.47±2.76 12.55±2.48 0.029 0.903 0.799 Right ganglion cell layer (Before) Right ganglion cell layer (After) p** 14.72±8.04 13.66±3.75 0.497 15.22±9.17 14.37±6.44 0.491 13.33±4.54 13.19±2.61 0.858 0.555 0.552 Right inner plexiform cell layer (Before) Right inner plexiform cell layer (After) p** 19.06±6.48 19.12±3.22 0.958 19.85±6.47 20.00±4.70 0.882 17.86±3.97 19.38±3.04 0.071 0.340 0.609 Right inner nuclear cell layer (Before) Right inner nuclear cell layer (After) p** 19.66±8.05 19.87±3.45 0.878 19.40±7.47 18.74±4.03 0.586 17.52±5.34 18.44±3.78 0.362 0.383 0.259 Right outer plexiform cell layer (Before) Right outer plexiform cell layer (After) p** 26.76±9.24 25.78±3.58 0.546 26.94±6.66 27.42±5.62 0.697 26.19±7.99 26.05±5.20 0.919 0.919 0.333 Right outer nuclear cell layer (Before) Right outer nuclear cell layer (After) p** 87.87±11.71 93.06±8.03 0.019 86.74±13.71 89.28±9.90 0.205 87.16±13.53 91.61±8.72 0.040 0.937 0.217 Right pigment epithelial layer (Before) Right pigment epithelial layer (After) p** 16.60±4.28 16.66±1.45 0.941 15.54±2.63 16.31±1.45 0.086 15.27±1.56 16.22±1.74 0.011 0.161 0.466 Right inner retinal layer (Before) Right inner retinal layer (After) p** 182.72±33.92 181.36±13.91 0.830 179.42±29.02 178.31±19.30 0.794 175.25±21.19 181.19±14.22 0.100 0.549 0.673 Right outer retinal layer (Before) Right outer retinal layer (After) p** 87.72±4.77 85.30±4.23 0.041 85.94±4.69 85.40±3.92 0.592 86.69±3.83 85.05±4.30 0.042 0.257 0.937 Right retinal nerve fiber thickness (Before) Right retinal nerve fiber thickness (After) p** 99.06±11.56 100.96±10.61 0.261 101.54±7.64 99.40±6.48 0.061 98.94±9.17 97.44±8.52 0.248 0.442 0.243 Left central macular thickness (Before) Left central macular thickness (After) p** 269.87±28.45 273.60±10.70 0.463 263.65±19.83 269.71±16.14 0.052 261.58±17.13 269.72±12.80 0.020 0.279 0.394 Left nerve fiber layer (Before) Left nerve fiber layer (After) p** 13.15±7.83 12.09±1.89 0.469 11.68±2.17 11.77±2.17 0.812 12.16±2.22 11.50±2.14 0.319 0.406 0.501 Left ganglion cell layer (Before) Left ganglion cell layer (After) p** 13.66±4.78 12.63±1.98 0.249 12.91±3.39 13.08±2.79 0.726 13.18±3.75 12.55±3.29 0.499 0.721 0.688 Left inner plexiform layer (Before) Left inner plexiform layer (After) p** 19.60±6.87 17.48±2.20 0.106 18.80±3.23 17.82±2.99 0.040 18.00±3.65 17.36±2.88 0.363 0.386 0.759 Left inner nuclear cell layer (Before) Left inner nuclear cell layer (After) p** 19.78±7.18 21.24±4.23 0.305 17.40±4.62 20.34±4.53 0.001 18.33±5.67 21.61±4.53 0.009 0.249 0.470 Left outer plexiform cell layer (Before) Left outer plexiform cell layer (After) p** 27.51±8.41 27.12±3.58 0.801 26.14±6.24 27.20±3.76 0.275 26.77±6.69 26.16±4.74 0.679 0.732 0.497 Left outer nuclear cell layer (Before) Left outer nuclear cell layer (After) p** 89.00±12.30 92.87±10.91 0.136 91.20±11.07 92.28±11.26 0.646 85.72±11.39 93.02±11.52 0.001 0.139 0.958 Left pigment epithelial layer (Before) Left pigment epithelial layer (After) p** 16.96±6.89 15.30±2.44 0.218 16.34±5.15 15.48±2.20 0.337 15.52±1.64 15.41±2.23 0.818 0.487 0.947 Left inner retinal layer (Before) Left inner retinal layer (After) p** 181.45±27.46 182.42±15.67 0.842 176.91±20.14 180.68±15.67 0.233 174.11±17.49 179.63±13.77 0.081 0.380 0.703 Left outer retinal layer (Before) Left outer retinal layer (After) p** 86.51±7.50 84.63±4.32 0.247 86.31±4.95 85.31±5.20 0.364 85.83±3.68 85.63±4.03 0.817 0.870 0.651 Left retinal nerve fiber thickness (Before) Left retinal nerve fiber thickness (After) p** 96.12±14.08 95.15±9.41 0.647 100.14±8.02 96.31±7.05 0.007 97.02±10.87 93.63±9.12 0.025 0.299 0.423 T3 3.86±0.87 3.12±0.55 3.16±0.77 <0.001 a>b, a>c T4 10.75±3.16 9.85±1.84 9.57±2.00 0.112 TSH 7.86±3.89 10.97±5.94 11.58±6.39 0.015 c>a * One way ANOVA ** paired t test Retinal cell layer values before and after treatment in the study groups 38 Table 3 Table 4 A comparison of the patients’ pre- and post- treatment Vitamin D levels A comparison of the patients’ pre- and post- treatment Vitamin D levels in the study groups * One-way ANOVA, ** paired t test Vitamin D Mean±SD p Pre-treatment 13.92±5.84 (min.0, max.24) <0.001 Post-treatment (3-months) 29.89±8.79 (min.13, max.88 Levothyroxine groupa Vitamin D groupb Levothyroxine+ Vitamin D groupc p Pre- treatment 20.27±2.62 11.25±4.88 10.71±3.90 <0.001* a>b, a>c Post- treatment 30.08±5.42 28.94±11.80 30.65±7.98 0.713* P <0.001** <0.001** <0.001** Statistically significant post-treatment increases in right central macular thickness, right nerve fiber layer, right outer nuclear cell layer, right pigment epithelial layer, left central macular, and left inner nuclear cell thicknesses compared to pre-treatment were observed in the group receiving levothyroxine + vitamin D. Conclusioni The findings of this study suggest that changes occur in the retinal cell layers of hypothyroid patients. This research investigated the development of hypothyroidism, a condition mostly of autoimmune origin, as a result of vitamin D deficiency deriving from environmental factors and the relationship between vitamin D deficiency and retinal cell damage. The increase in the thickness in some retinal cell layers in the group receiving vitamin D therapy only was found to be statistically significant. However, an increase in thickness was observed in more cell layers in the group using vitamin D and levothyroxine in combination. This suggests that vitamin D levels should be measured in hypothyroid patients, and that appropriate doses and lengths of treatment should be administered in cases in which these levels are low. The number of studies on this subject is limited. However, we think that more significant results can be obtained with longer follow-up and treatment and larger sample numbers in the future. Right outer retinal layer thicknesses in this study decreased significantly in the patients in the levothyroxine group compared to pre-treatment. Ozturk et al. examined the OCT findings of patients with primary hypothyroidism at one, three, and six months and reported no significant change in the thickness of the retinal nerve fiber layer after treatment compared to pre-treatment [19]. Yu et al. compared patients with thyroid-related ophthalmopathy and healthy volunteers and determined a thinner retinal nerve fiber layer in the ophthalmopathy group [20]. The thicknesses of the left inner plexiform layer and left retinal nerve fibers in this study decreased in the vitamin D group compared to pre-treatment, while left inner nuclear cell layer thickness increased significantly compared to pre-treatment. Fjeldstad et al. also determined no association between decreased retinal nerve fiber layer thickness or macular volume and Vitamin D deficiency in multiple sclerosis patients with no findings of optic neuritis [21]. These findings may be due to sampling differences. Research limitations: One particular limitation of the study is that it was conducted in a single center. Epidemiological studies recently showed an association between low 25-hydroxyvitamin D (25-OH-D) concentrations and impairment of visual acuity [22]. A positive association has also been reported between Vitamin D deficiency and age-related macular dysfunction [23-26]. Ethics approval and consent to participate: Kirklareli University Health Sciences Institute Ethical Committee, Turkey, in March 2021 (no. E-69456409-199-7279). Disclosures: There is no conflict of interest for all authors. The participants’ descriptive characteristics However, no significant increase was observed in the cell layers in the group receiving levothyroxine only. Link et al. examined the OCT retinal findings and visual acuity of a patient with vitamin D, vitamin A, and vitamin B6 deficiency before and after treatment and determined severe pre-treatment thinning in the inner plexiform layer and the ganglion cell layer, and vision impairment. However, an improvement in vision and increased thickness in the cell layers were determined after treatment [28].i Table 4 A comparison of the patients’ pre- and post- treatment Vitamin D levels in the study groups * One-way ANOVA, ** paired t test Levothyroxine groupa Vitamin D groupb Levothyroxine+ Vitamin D groupc p Pre- treatment 20.27±2.62 11.25±4.88 10.71±3.90 <0.001* a>b, a>c Post- treatment 30.08±5.42 28.94±11.80 30.65±7.98 0.713* P <0.001** <0.001** <0.001** Left inner nuclear cell layer thickness increased significantly in the present study in the group receiving vitamin D only. Another study involving a quantitative evaluation of retinal structure parameters in children with vitamin D deficiency compared retinal nerve fiber layer, central macula, retinal layer, and choroid thicknesses and structural retinal parameters including the central retinal artery and central retinal vein between the vitamin D deficiency group and healthy volunteers. The findings revealed choroidal thinning, a decreased central retinal artery diameter, and an increased central retinal vein diameter in the vitamin D deficiency group [29]. Discussion One of the environmental factors involved in the etiology of hypothyroidism is vitamin D deficiency [2]. Vitamin D has been shown to suppress the inflammatory cascade in the region between the retinal pigment epithelium and the choroid and to protect the retinal cells against inflammatory injury [16]. Decreased central retinal thickness measured using OCT in individuals with no disease has been found in subjects with vitamin D deficiency. In addition, an association has been found between vitamin D deficiency and decreased vision [17]. The findings of the present study suggest that vitamin D deficiency can give rise to thinning in specific retinal cell layers in hypothyroid patients. However, a significant increase was observed after treatment, particularly in the group receiving combined levothyroxine and vitamin D. Robredo et al. investigated the effect of vitamin D against oxidative stress and inflammation in retinal pigment epithelium and retinal endothelial cell series and determined a decrease in proinflammatory cytokine and interleukin levels with the addition of vitamin D to treatment. This also suggests that Vitamin D exhibits anti-inflammatory effects [30]. In another study, Ekinci et al. showed that vitamin D3 [1.25 (OH) 2] exhibited an ameliorating effect against oxidative damage in retinal cell layers. At the same time, those authors reported that vitamin D represented an effective therapeutic alternative in the prevention of age-related macular degeneration [31]. All members of the patient group in this study were hypothyroid, and thinning was determined in specific layers at initial examination. TSH levels were higher in the group using levothyroxine+vitamin. Ulas et al. compared the blood values and OCT findings of patients with chorioretinitis and a control group and determined high TSH values and a thinner choroid and retinal cell layer at OCT in the group with chorioretinitis. They therefore concluded that that thinning occurs in the cell layer in individuals with hypothyroidism [18]. Disclosures: There is no conflict of interest for all authors. Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 References 1. Chistiakov DA. Immunogenetics of Hashimoto thyroiditis. J Autoimmune Dis. 2005;2:1. https://doi.org/10.1186/1740-2557-2-1 1. Chistiakov DA. Immunogenetics of Hashimoto thyroiditis. J Autoimmune Dis. 2005;2:1. https://doi.org/10.1 2. Wiersinga WM. Clinical Relevance of Environmental Factors in the Pathogenesis of Autoimmune Thyroid Metab. 2016;31(2):213-223. https://doi.org/10.3803/EnM.2016.31.2.213 M. Clinical Relevance of Environmental Factors in the Pathogenesis of Autoimmune Thyroid Disease. Endocri ;31(2):213-223. https://doi.org/10.3803/EnM.2016.31.2.213 3. Bindra A, Braunstein GD. Thyroiditis. Am. Fam. Physician. 2006;73:1769-1776. 3. Bindra A, Braunstein GD. Thyroiditis. Am. Fam. Physician. 2006;73:1769-1776. y y 4. Pearce EN, Farwell AP, Braverman LE. Thyroiditis. New Engl J Med. 2003;348:2646-2655. https://doi.org/10.1056/NEJMra021194 5. Ahn J, Park S, Zuniga B, Bera A, Song CS, Chatterjee B. Vitamin D in prostate cancer. Vitam Horm 2016;100:321-355. https://doi. org/10.1016/bs.vh.2015.10.012 , , y g ; p g 5. Ahn J, Park S, Zuniga B, Bera A, Song CS, Chatterjee B. Vitamin D in prostate cancer. Vitam Horm 2016;100:321-355. https://doi. org/10.1016/bs.vh.2015.10.012 6. Al Mheid I, Quyyumi AA. Vitamin D and cardiovascular disease: Controversy unresolved. J Am Coll Cardiol. 2017;4; 70(1):89- 100. https://doi.org/10.1016/j.jacc.2017.05.031 7. Duque G, Daly RM, Sanders K, Kiel DP. Vitamin D, bones and muscle: Myth versus reality. Australas J Ageing. 2017;36 (Suppl 1):8-13. https://doi.org/10.1111/ajag.12408 8. Ekmekcioglu C, Haluza D, Kundi M. 25-hydroxyvitamin d status and risk for colorectal cancer and type 2 diabetes mellitus: A systematic review and meta-analysis of epidemiological studies. Int J Environ Res Public Health. 2017;14. https://doi.org/10.3390/ ijerph14020127 9. Field S, Davies J, Bishop DT, Newton-Bishop JA. Vitamin d and melanoma. Dermatoendocrinol. 2013;5:121-129. https://doi. org/10.4161/derm.25244 10. Gaksch M, Jorde R, Grimnes G, Joakimsen R, Schirmer H, Wilsgaard T, et al. Vitamin D and mortality: Individual participant data meta-analysis of standardized 25-hydroxyvitamin D in 26916 individuals from a european consortium. PLoS One. 2017; 12:e0170791. 11. Grubler MR, Marz W, Pilz S, Grammer TB, Trummer C, Mullner C, et al. Vitamin-D concentrations, cardiovascular risk and events - a review of epidemiological evidence. Rev Endocr Metab Disord. 2017;18:259-272. https://doi.org/10.1007/s11154-017-9417-0 12 Hill TR A TJ Th l f it i d i i t i i b h lth i ld l Th Ad M l k l t Di 2017 9 89 95 11. Grubler MR, Marz W, Pilz S, Grammer TB, Trummer C, Mullner C, et al. Vitamin-D concentrations, cardiovascular risk and events - a review of epidemiological evidence. Rev Endocr Metab Disord. 2017;18:259-272. https://doi.org/10.1007/s11154-017-9417-0 12. Hill TR, Aspray TJ. The role of vitamin d in maintaining bone health in older people. References Ther Adv Musculoskelet Dis. 2017;9: 89-95. https://doi org/10 1177/1759720X17692502 12. Hill TR, Aspray TJ. The role of vitamin d in maintaining bone health in older people. Ther Adv Musculoske https://doi.org/10.1177/1759720X17692502 13. Feart C, Helmer C, Merle B, Herrmann FR, Annweiler C, Dartigues JF et al. Associations of lower vitamin D concentrations with cognitive decline and long-term risk of dementia and Alzheimer's disease in older adults. Alzheimers Dement. 2017;13(11):1207-16. https://doi.org/10.1016/j.jalz.2017.03.003 14. Hribova P&Sotak S. Vitamin D and ophthalmopathias. A review. Cesk Slov Oftalmol. 2022;78(4 org/10.31348/2021/31 ak S. Vitamin D and ophthalmopathias. A review. Cesk Slov Oftalmol. 2022;78(4):153-156. https://doi. 21/31 15. Azimi A, Bonakdaran S, Heravian J, Layegh P, Yazdani N, Alborzi M. Pattern visual evoked potential in hypothyroid patients. Doc Ophthalmol. 2019;138(2):77-84. https://doi.org/10.1007/s10633-019-09670-1l p ( ) p g 16. Lee V, Rekhi E, Hoh Kam J, Jeffery G. Vitamin D rejuvenates aging eyes by reducing inflammation, clearing amyloid beta and improving visual function. Neurobiol Aging. 2012;33(10):2382-9. https://doi.org/10.1016/j.neurobiolaging.2011.12.002 p g g g ( ) p g j g g 17. Graffe A, Beauchet O, Fantino B, Milea D, Annweiler C. Vitamin D and macular thickness in the elderly: an optical coherence tomography study. Invest Ophthalmol Vis Sci. 2014;55(8):5298-303. https://doi.org/10.1167/iovs.14-13918 17. Graffe A, Beauchet O, Fantino B, Milea D, Annweiler C. Vitamin D and macular thickness in the elderly tomography study. Invest Ophthalmol Vis Sci. 2014;55(8):5298-303. https://doi.org/10.1167/iovs.14-13918 17. Graffe A, Beauchet O, Fantino B, Milea D, Annweiler C. Vitamin D and macular thickness in the elderly: an optical coherence tomography study. Invest Ophthalmol Vis Sci. 2014;55(8):5298-303. https://doi.org/10.1167/iovs.14-13918 , , , , y mography study. Invest Ophthalmol Vis Sci. 2014;55(8):5298-303. https://doi.org/10.1167/iovs.14-13918 18. Ulas F, Uyar E, Tekce H, Celebi S. Can Hypothyroidism Cause Acute Central Serous Chorioretinopathy? Semin Ophthalmol. 2019;34(7-8):533540. https://doi.org/10.1080/08820538.2019.1684524 moglu H, Dikbas O, Pekel H, Gonen MS. Ocular changes in primary hypothyroidism. BMC Res Notes. 2009;2:66. .1186/1756-0500-2-266 19. Ozturk BT, Kerimoglu H, Dikbas O, Pekel H, Gonen MS. Ocular changes in primary hypothyroidism. BMC https://doi.org/10.1186/1756-0500-2-266 p g 20. Yu L, Jiao Q, Cheng Y, Zhu Y, Lin Z, Shen X. Evaluation of retinal and choroidal variations in thyroid-associated ophthalmopathy using optical coherence tomography angiography. BMC Ophthalmol. 2020;20(1):421. https://doi.org/10.1186/s12886-020-01692-7i 21. Fjeldstad C, Fjeldstad AS, Weir JP, Pardo G . Association of vitamin D deficiency with RNFL thickness in MS individuals without history of optic neuritis. Mult Scler Relat Disord. 2014;3(4):489-93. https://doi.org/10.1016/j.msard.2014.03.001 22. Beauchet O, Milea D, Graffe A, Fantino B, Annweiler C. Conclusioni Ozturk and Cankaya (2020) compared a group with vitamin D deficiency and a group with normal vitamin D levels and observed that deficiency produced adverse effects on contrast sensitivity function and also a difference in thickness in some segments of the retinal layers [27]. Acknowledgements: None. Funding: None. Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 39 References Association between serum 25-hydroxyvitamin D concentrations and vision: a cross-sectional population-based study of older adults. J Am Geriatr Soc. 2011;59:568-570. https://doi.org/10.1111/j.1532- 5415.2010.03299.x 23. Parekh N, Chappell RJ, Millen AE, Albert DM, Mares JA. Association between vitamin D and age-related macular degeneration in the Third National Health and Nutrition Examination Survey, 1988 through 1994. Arch Ophthalmol. 2007;125:661-669. https://doi. org/10.1001/archopht.125.5.661 g p 24. Millen AE, Voland R, Sondel SA. Vitamin D status and early age-related macular degeneration in postmenopausal women. Arch Ophthalmol. 2011;129: 481-489. https://doi.org/10.1001/archophthalmol.2011.48 25. Morrison MA, Silveira AC, Huynh N. Systems biology-based analysis implicates a novel role for vitamin D metabolism in the pathogenesis of age-related macular degeneration. Hum Genomics. 2011;5: 538-568. https://doi.org/10.1186/1479-7364-5-6-538 25. Morrison MA, Silveira AC, Huynh N. Systems biology-based analysis implicates a novel role for vitamin D metabolism in the pathogenesis of age-related macular degeneration. Hum Genomics. 2011;5: 538-568. https://doi.org/10.1186/1479-7364-5-6-538 26. Graffe A, Milea D, Annweiler C. Association between hypovitaminosis D and late stages of age-related macular degeneration: a case- l d A G i S 2012 60 136 1369 h //d i /10 1111/j 1 32 41 2012 0401 pathogenesis of age-related macular degeneration. Hum Genomics. 2011;5: 538-568. https://doi.org/10.1186/1479-7364-5-6-538 26. Graffe A, Milea D, Annweiler C. Association between hypovitaminosis D and late stages of age-related macular degeneration: a case- control study. J Am Geriatr Soc. 2012;60:1367-1369. https://doi.org/10.1111/j.1532-5415.2012.04015.x 26. Graffe A, Milea D, Annweiler C. Association between hypovitaminosis D and late stages of age-related macular degeneration: a case- control study. J Am Geriatr Soc. 2012;60:1367-1369. https://doi.org/10.1111/j.1532-5415.2012.04015.xi 27. Ozturk E, Cankaya C. Effect of Vitamin D Deficiency on Contrast Sensitivity Function. Curr Eye Res. 2020;45(12):1619-1624. https://doi.org/10.1080/02713683.2020.1781194i 28. Link YH, Mirabelli P, Lindehammar H, Link H. Retinal changes associated with multivitamin deficiency before and after supplementation. Acta Neurol Scand. 2021;144(2):209-215. https://doi.org/10.1111/ane.13438 29. Aydemir E, Ilhan C, Aydemir GA, Bayat AH, Bolu S, Asik A. Evaluation of Retinal Structure in Pediatric Su Deficiency. Am J Ophthalmol. 2022;233:30-37. https://doi.org/10.1016/j.ajo.2021.06.031 30. Robredo PF, Zamora JG, Recalde S, Malave VB, Bezunartea J, Hernandez M, et al. Vitamin D Protects against Oxidative Stress and Inflammation in Human Retinal Cells. Antioxidants (Basel). 2020;9(9):838. https://doi.org/10.3390/antiox9090838 31. Ekinci C, Guler EM, Kocyigit A, Kirik F, Ozdemir H. Effects of 1,25 Dihydroxyvitamin D 3 on Human Retinal Pigment Epithelial Cell Lines. Int Ophtalmo. 2021;41(10):3333-3340. https://doi.org/10.1007/s10792-021-01895-x Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 6 Journal of Clinical Medicine of Kazakhstan: 2023 Volume 20, Issue 40
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Creep and permeability evolution behavior of red sandstone containing a single fissure under a confining pressure of 30 MPa
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Creep and permeability evolution behavior of red sandstone containing a single fissure under a confining pressure of 30 MPa Sheng-Qi Yang   * & Bo Hu Sheng-Qi Yang The long-term deformation and permeability evolution with time are key issues for geo-engineering applications such as radioactive waste disposal. Rock permeability concurrent with deformation is significantly influenced by cracking. This study investigated the creep-permeability evolution behavior of red sandstone specimens containing a single fissure under a confining pressure of 30 MPa. First, the effects of stress ratio (SR) and fissure dip angle on the creep behavior of rock were investigated. The more loading/unloading cyclic numbers, the larger the irrecoverable axial deformation. The instant elastic strains and visco-elastic strains linearly increased with SR for both the intact and fissured specimens, whereas the instant plastic strains showed different results. The visco-plastic strains nonlinearly increased. For fissured and intact specimens, the creep strains and the steady-state creep rates nonlinearly increased as SR increased. The instantaneous strains, instant elastic strains, and visco-elastic strains slightly varied when the fissure dip angle was less than 45° but notably decreased with increasing fissure dip angle beyond 45°. However, the fissure dip angle had no obvious effects on the plastic and creep strains. Damage (D) was defined using the ratio of non-elastic strains to the total strain. D increased approximately linearly with SR, but the fissure dip angle had no obvious influences. Subsequently, the long-term strength (LTS) of the red sandstone was determined using two different methods. The LTS first decreased when the fissure dip angle increased from 0 to 45° but increased with increasing dip angle. The triaxial and creep failure modes were mainly shear along anti-wing cracks for the fissured specimens but shear failure occurred for the intact specimen. Moreover, the permeability of the fissured red sandstone was governed by SR and deformation or time. During the multi-step loading/ unloading creep process, the permeability first decreased and then had a sudden rise when tertiary creep occurred. Discontinuities (joints, fractures, cracks, and faults) widely exist in rock masses, which cause many difficulties for stability design in rock engineering. The discontinuities not only reduce the strength but also increase the deformation of the rock mass. Stress concentration in some regions occurs, helping the initiation of new disconti- nuities1–4. Therefore, it is challenging to predict the mechanical properties and failure patterns of the rock masses. Engineers and scientists are interested in the mechanical behavior of jointed rock mass5,6. www.nature.com/scientificreports www.nature.com/scientificreports www.nature.com/scientificreports Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R Preparation of single-fissured red sandstone. Rock specimens of—red sandstone were collected from Rizhao City in Shandong Province, China. It has a classic and blocky structure as shown in Fig. 1a. Its dry density is 2402 kg/m3, and effective porosity is ~6.26–6.55%37. The mineral mainly comprises quartz and feldspar calcite, dolomite, hematite and clay minerals38. Cuboid blocked rock was first cut, and then the pre-existing fissures were produced using high-speed water jet technology to obtain fissured rock specimens with different fissure dip angles. Finally, cylindrical red sandstones with different fissure inclinations were drilled and polished. The height of the cylindrical fissured red sandstone was 50 × 100 mm and the length (2a) and width (2d) of the fissure were 12 and 2 mm, respectively. The dip angles of the fissure were from 0 to 90° (interval 15° and α is the dip between fissure and horizontal axial), as shown in Fig. 1b. The cylindrical red sandstones containing a single pre-existing fissure with different dip angles and intact specimen are presented in Fig. 1. Testing method. To investigate the influence of fissure dip angle on the creep mechanical behavior of red sandstone under high confining pressure and to study its gas permeability evolution during the creep deforma- tion process, the triaxial compressive strength needs to be first determined before creep experiments. Specifically, traditional triaxial compressive tests under a confining pressure of 30 MPa on single-fissured red sandstones and the intact specimen were performed using a triaxial rock apparatus, as shown in Fig. 2 14. First, the specimens were subjected to a hydrostatic pressure of 30 MPa at a rate of 5 MPa/min. Then, the specimens were subjected to axial loading at a rate of 0.02 mm/min until failure. Finally, the triaxial compressive strength (TCS) was obtained. Creep stress levels were set according to the TCS.h p g The multi-step loading-unloading method was used during creep experiments to study the elastic-visco-plastic creep deformations of the specimens. During creep loading and unloading stages, the loading rate and unloading rate were 6 MPa/min. Each loading stress steps lasted two days until accelerating creep occurred and the unloading stress steps (visco-elastic recovery) were only performed for a day. The axial and lateral displacements were recorded using two parallel linear variable differential transformers (LVDTs) in axial dimension and a circumferential displacement transducer, respectively. www.nature.com/scientificreports/ which can lead to fatigue at cracks tips21,22. Brittle creep occurs under static fatigue conditions when the fracture toughness exceeds the stress intensity factor at crack tips23,24. Some researchers have concluded that the main mechanism of creeping in the rock is time-dependent cracking25–27. Kaiser and Morgenstern28 found that the visco-plasticity was apparent when the stress reached near the peak strength based on the time-dependent defor- mations of jointed coal. Hao et al.29 reported the results of brittle creep-relaxation experiments of rock, which may increase the understanding of the relationship between stress relaxation and time-to-failure and predict the time-dependent rupture and energetic release during the relaxation phase. Patton and Fletcher30 theoretically studied the time-dependent closure of a fracture with a rough surface under normal stress compression, and then, the constitutive equations were used to verify the response on two types of fractured layers. Fabre and Pellet31 pre- sented the experimental results of argillaceous rocks with various fabric plane inclinations under different loading conditions and reported their time-dependent deformations. The microstructural analysis highlighted the gran- ular creep. Zhao et al.32 compared the creep behaviors of intact and cracked limestones by a series of multi-step loading and unloading creep tests. However, most studies focused on the micro-flaws or subcritical cracks.hh g g pl There have been reports on the creep behaviors of rock containing macro-cracks. The long-term strength (LTS) of jointed rock mass is also an essential parameter for stability evaluation. The time-dependent deformation of jointed rock mass plays a critical role in evaluating the long-term stability of rock mass engineering. Chen et al.33 proposed a damaged coupled visco-elastic-plastic model to simulate the time-dependent deformation of rock mass in the Shanxi YRDP project. A micromechanics-based model was developed to predict the creep deforma- tion of hard rock and assess the long-term stability of the excavations34. Nara et al.35 obtained the crack velocity in andesite and high-strength and ultra-low permeability concrete in water and air environments. They estimated the LTS of the specimens, which provides a vital reference for assessing the long-term stability of the underground repository. Chandler36 determined the LTS of crystalline rocks, which was the stress corresponding to the reversal point at the volume strain curve. www.nature.com/scientificreports/ Generally, the LTS was less than the peak stress.fi However, to date, the effects of macro fissure inclination angle on the long-term deformation and failure behavior of real hard rock contacting pre-existing fissure and its long-term permeability evolution during the creep process have not been extensively investigated. Therefore, to better understand the effects of a macro fis- sure on the elastic-viscoplastic deformation and LTS, a series of cyclic loading and unloading creep tests and gas permeability measurement of the intact and fissured rock containing a fissure with different inclinations are presented. Then, a new method will be presented to estimate the LTS of red sandstone. Creep and permeability evolution behavior of red sandstone containing a single fissure under a confining pressure of 30 MPa However, it is hard to perform in-situ experiments, so various scholars have investigated the failure mechanisms of rock specimens or rock-like materials containing pre-existing flaws at indoor laboratories. Generally speaking, two main research areas focus on crack initiation patterns and on cracking modes under uniaxial compression and triaxial compres- sion4,7–12. Previous investigations have promoted our understanding of crack initiation and coalescence processes for jointed rock masses under short-term loading. The results showed that wing cracks and secondary cracks are typical failure modes, although there were different failure patterns13. yp gf p In practice, long-term stability and support design of deep underground engineering should consider the creep mechanical behaviors of rock masses14–19. It is necessary to investigate the time-based deformation behavior and crack propagation of jointed rocks. Subcritical crack growth was one of the main reasons for the time-dependent behavior of brittle rock20. Laboratory tests have shown the effect of stress on induced anisotropy, tate Key Laboratory for Geomechanics and Deep Underground Engineering, School of Mechanics and Civi ngineering, China University of Mining and Technology, Xuzhou, 221116, P.R. China. *email: yangsqi@hotmail.com Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R Nitrogen was used as a flow medium and the steady-state method was used to measure the gas permeability of the single-fissured rock during creep loading and unloading stages. The injected gas pressure was 3 MPa, and that of the outlet gas was 0.1 MPa. The permeability can be calculated using Eq. (1)39. The physical param- eters of the specimens and experimental designs are presented in Tables 1 and 2. μ = − · · · · k Q L p A p p 2 ( ) (1) d u d 2 2 (1) where Q represents gas flow velocity (m3/s); L and A represent the length (m) and the cross-sectional area (m2) of the rock specimen, respectively; μ is the viscosity of nitrogen (Pa·s); and Pu and Pd represent the upstream and downstream gas pressure (MPa), respectively. where Q represents gas flow velocity (m3/s); L and A represent the length (m) and the cross-sectional area (m2) of the rock specimen, respectively; μ is the viscosity of nitrogen (Pa·s); and Pu and Pd represent the upstream and downstream gas pressure (MPa), respectively. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Figure 1. Tested red sandstone and geometry of pre-existing fissure. Figure 1. Tested red sandstone and geometry of pre-existing fissure. Figure 1. Tested red sandstone and geometry of pre-existing fissure. Figure 2. Rock triaxial rheological testing device14. Figure 2. Rock triaxial rheological testing device14. Creep Behavior of Red Sandstone Containing a Single Fissuref Creep Behavior of Red Sandstone Containing a Single Fissure Under compression, the rock specimen deforms gradually and different types of deformation compose the total deformation. When a constant loading is applied to the specimen, instant elastic and plastic deformation occurs, and visco-elastic and visco-plastic deformation occur with increasing time. When the loading is removed, the instant elastic deformation will be recovered soon and the visco-elastic deformation will recover gradually. The instant plastic and visco-plastic deformation cannot recover. Therefore, the elastic, viscous, and plastic defor- mations of the fissured rocks can be separated using the multi-step loading and unloading method. The creep loading-unloading path and an example of strain separation are plotted in Fig. 3. Finally, the influences of stress ratio (SR) and dip angle on the elastic-visco-plastic deformations of the single-fissured red sandstones can be quantitatively analyzed. The deviatoric stress-strain curves of the intact specimen and the fissured specimen are presented in Fig. 4 and Appendix 1. Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R The relationship between fissure angle and peak stress is presented in Fig. 5. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Specimen α/° L/mm D/ mm M/g ρ/kg/m3 σ3/ MPa σP/ MPa TCS/ MPa Testing design EW-1# Intact 99.40 49.99 471.20 2415.25 30 271.82 301.82 Triaxial compression ES-0-1# 0 100.50 49.99 478.10 2423.79 30 163.85 193.85 Triaxial compression ES-15-1# 15 101.20 49.99 482.70 2430.19 30 159.75 189.75 Triaxial compression ES-30-1# 30 99.60 49.99 472.90 2419.10 30 157.70 187.70 Triaxial compression ES-45-1# 45 100.70 49.99 480.70 2432.14 30 168.16 198.16 Triaxial compression ES-60-1# 60 99.50 49.99 475.10 2432.79 30 169.15 199.15 Triaxial compression ES-75-1# 75 100.90 49.99 478.50 2416.21 30 178.30 208.30 Triaxial compression ES-90-1# 90 99.90 49.99 468.40 2388.89 30 203.02 233.02 Triaxial compression EW-10# Intact 100.70 49.99 480.7 2432.14 30 — Creep compression ES-0-2# 0 101.40 49.99 485.80 2440.98 30 — Creep compression ES-15-2# 15 102.00 49.99 482.70 2414.63 30 — Creep compression ES-30-2# 30 100.20 49.99 474.70 2413.77 30 — Creep compression ES-45-6# 45 100.20 49.99 482.50 2453.43 30 — Creep compression ES-60-2# 60 99.50 49.99 477.50 2445.09 30 — Creep compression ES-75-2# 75 100.40 49.99 479.50 2433.32 30 — Creep compression ES-90-2# 90 100.00 49.99 478.60 2438.47 30 — Creep compression Table 1. Basic parameters of the tested red sandstone specimens in this research. Note: α: fissure dip angle; L: length; D: diameter; M: mass; ρ: density; σ3: confining pressure; σp: peak deviatoric stress; TCS = σ3 + σp. Table 1. Basic parameters of the tested red sandstone specimens in this research. Note: α: fissure dip angle; L length; D: diameter; M: mass; ρ: density; σ3: confining pressure; σp: peak deviatoric stress; TCS = σ3 + σp. Table 1. Basic parameters of the tested red sandstone specimens in this research. Note: α: fissure dip angle; L: length; D: diameter; M: mass; ρ: density; σ3: confining pressure; σp: peak deviatoric stress; TCS = σ3 + σp. Specimen α/° σ3/MPa S1 S2 S3 S4 S5 S6 EW-10# Intact 30 180 205 220 240 260 274* ES-0-2# 0 30 100 115 130 145 154.47* ES-15-2# 15 30 100 115 130 145* ES-30-2# 30 30 100 115 130 145* ES-45-6# 45 30 100 115 130 145* ES-60-2# 60 30 100 115 130 145 150.41* ES-75-2# 75 30 115 130 145 160 170 177.94* ES-90-2# 90 30 130 145 160 175 193.07* Table 2. Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R Applied deviatoric stress levels in creep tests (σ3 = 30 MPa). Note: *Represents the final failed stress. All the figure legends: Table 2. Applied deviatoric stress levels in creep tests (σ3 = 30 MPa). Note: *Represents the final failed stress. All the figure legends Table 2. Applied deviatoric stress levels in creep tests (σ3 = 30 MPa). Note: *Represents the final failed stress. All the figure legends: Table 2. Applied deviatoric stress levels in creep tests (σ3 = 30 MPa). Note: *Represents the final failed st All the figure legends: Figure 3. Loading procedure and a strain separation case (Fissured sandstone with 45° dip angle). Note: εm: instantaneous strain; εme: instantaneous elastic strain; εmp: instantaneous plastic strain; εc: creep strain; εcve: visco-elastic strain; εcvp: visco-plastic strain. Figure 3. Loading procedure and a strain separation case (Fissured sandstone with 45° dip angle). Note: εm: instantaneous strain; εme: instantaneous elastic strain; εmp: instantaneous plastic strain; εc: creep strain; εcve: visco-elastic strain; εcvp: visco-plastic strain. Figure 3. Loading procedure and a strain separation case (Fissured sandstone with 45° dip angle). Note: εm: instantaneous strain; εme: instantaneous elastic strain; εmp: instantaneous plastic strain; εc: creep strain; εcve: visco-elastic strain; εcvp: visco-plastic strain. The peak stress of the intact specimen was nearly 1.3 times that of the 90° specimen, which can be subjected to more loading.hii The peak stress of the intact specimen was nearly 1.3 times that of the 90° specimen, which can be subjected to more loading.hii The creep deformations of the intact and fissured rocks with various fissure dip angles under multi-step loading-unloading conditions are plotted in Fig. 6 and Appendix 2. Notably, the creep rate means that the strain rate evolves as time increases under constant loading during the total creep stage. The steady state denotes that the creep rate was almost constant or the creep rate increased approximately linearly during the creeping stage. It Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Figure 4. Typical short-term triaxial stress-strain curves of red sandstone (intact specimen, fissured specimens for α = 15°, 45°, and 75°). Note: the platforms on the creep curves mean creep deformations under constant stress levels. Figure 4. Typical short-term triaxial stress-strain curves of red sandstone (intact specimen, fissured specimens for α = 15°, 45°, and 75°). Note: the platforms on the creep curves mean creep deformations under constant stress levels. Figure 5. Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R Relationship between fissure angle and peak stress. Figure 5. Relationship between fissure angle and peak stress. Figure 5. Relationship between fissure angle and peak stress. is clear that the axial deformation increased with increasing axial deviatoric stress and creep time under constant stresses. The irrecoverable axial deformation increased with the cyclic numbers of loading and unloading. Under relative low-stress ratios, the axial deformations mainly contained decelerating and steady-state creep deforma- tions, whereas primary, secondary, and tertiary creep occurred under creep failure stress levels. Under unloading conditions (the deviatoric stress was 0 MPa), elastic-viscosity recoverable deformations were produced during this stage. For specimens with fissure dip angles of 0, 15, 30 and 75°, accelerating creep occurred in a very short time. The elastic, viscous, and plastic deformations of those specimens will be detailed in the following sections. Instantaneous elastic and plastic deformations. Here, the ratio of creep deviatoric stress to peak deviatoric stress is termed as SR. The relationships between SR and instantaneous elastic of the intact and the single-fissured red sandstones with various dip angles are presented in Fig. 7. It can be seen that the instantaneous Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ www.nature.com/scientificreports tificreports/ Figure 6. Typical axial strain, permeability vs. time curves of red sandstone (intact specimen, fissured specimens for α = 15°, 45°, and 75°). Figure 7. Relationships between stress ratio and instantaneous elastic and plastic strains of intact and fissured red sandstone. Figure 6. Typical axial strain, permeability vs. time curves of red sandstone (intact specimen, fissured specimens for α = 15°, 45°, and 75°). Figure 6. Typical axial strain, permeability vs. time curves of red sandstone (intact specimen, fissured specimens for α = 15°, 45°, and 75°). Figure 7. Relationships between stress ratio and instantaneous elastic and plastic strains of intact and fissured red sandstone. Figure 7. Relationships between stress ratio and instantaneous elastic and plastic strains of intact and fissured red sandstone. elastic strains of the specimens were linearly corrected to the stress ratio when SR varied from approximately 0.6 to 0.95, as shown in Fig. 7a. Two linear equations can describe the correlations between instantaneous elastic strain and SR of the intact and fissured specimens. Although the SRs applied on the intact specimen were similar to those of the fissured specimens, the former had relatively larger instantaneous elastic strain than the latter. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 Fissured Rock Material and Testing Method Preparation of single-fissured red sandstone.  R The relationships between SR and the instant plastic strain of the fissured sandstones are different (Fig. 7b). For the intact specimen and the fissured specimens with 45°, 75°, and 90° dip angles, the instant plastic strains increased approximately linearly as SR increased. However, for the other specimens, similar results were observed under low SRs, whereas instant plastic strain decreased under high SR. Visco-elastic and visco-plastic deformations. Both visco-elastic and visco-plastic deformations of rock are important parts of the long-term time-dependent deformation of rock, which quantitatively reflect the time-based deformation properties of rock. To better investigate the relationship between deformation and time during creep stage, it is necessary to separate the recoverable and irrecoverable deformations as time goes by. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Relationships between visco-elastic and visco-plastic strains and stress ratio of the specimens. Figure 10. Relationships between creep strain and plastic strain and stress ratio. Figure 10. Relationships between creep strain and plastic strain and stress ratio. point. The plastic strains increased with SR, whose fitting equations are presented in Fig. 10b, in which the non- linear fitting equation shows a larger R2 value than the linear fitting result. For intact specimens, the plastic strain also had a nonlinear correlation with SR. In contrast, the plastic strains of the intact specimen were larger than those of the fissured specimens. point. The plastic strains increased with SR, whose fitting equations are presented in Fig. 10b, in which the non- linear fitting equation shows a larger R2 value than the linear fitting result. For intact specimens, the plastic strain also had a nonlinear correlation with SR. In contrast, the plastic strains of the intact specimen were larger than those of the fissured specimens. Creep rate. The evolution of the strain rate during the creep stage is essential to analyze the time-based defor- mation of rock. Hao et al.29,40 presented a detailed study and discussion about the creep rate and how to define the steady-state and provided a relationship between failure-time with steady-state creep rate. Considering that the magnitude of the creep rates under relative high deviatoric stresses was larger than those under low-stress levels, the creep rates were plotted in logarithmic coordinates. In Fig. 11a, the steady-state creep rates (strain rates dur- ing the secondary creep stage) increased with deviatoric stress. When SR was less than approximately 0.8 (0.9), the steady-state creep rates had no distinct variations but suddenly increased beyond the SR point for fissured (intact) specimens. In contrast, the rates of the intact specimen were relatively lower than those of the fissured rock specimens. Because of space limitations, the evolutions of strain rate during primary, secondary, and tertiary creep stage of the specimens with a fissure dip angle of 15°, 45°, and 60° were presented, as shown in Fig. 11b–d. The strain rate reflected the evolution of an axial strain of rock during the creep stage, showing decreasing trend during primary and secondary creep stages and showing increasing trend at accelerating creep stage. Effect of fissure dip angle on the deformations. www.nature.com/scientificreports/ www.nature.com/scientificreports/ Figure 8. Creep strain, visco-elastic strain and visco-plastic strain of the fissured red sandstone. Figure 8. Creep strain, visco-elastic strain and visco-plastic strain of the fissured red sandstone. Therefore, the visco-elastic and visco-plastic deformations of the fissured red sandstone rock were separated using multi-step loading and unloading method as shown in Fig. 3b.ihi Typical separation results of the fissured rock with 45° and 60° inclinations are plotted in Fig. 8. The fitting method of the visco-elastic strain curves was obtained according to the report by Yang and Hu37. The creep strains, visco-elastic strains, and visco-plastic strains of the 45° specimen increased with increasing stress steps. Under deviatoric stress of 145 MPa, it showed primary, secondary and tertiary creep lasting approximately 10 h. The creep strain of the 60° specimen first slightly decreased when deviatoric stress increased from 100 to 115 MPa. After that, it increased gradually with increasing deviatoric stress. The visco-plastic strain showed a similar evolu- tion. The visco-elastic strain had no obvious variation when deviatoric stress was 100 and 115 MPa but increased with increasing stress levels. Generally, the time-dependent strains increased with increasing deviatoric stress.h g y p g Figure 9 plots the evolution of the visco-elastic and visco-plastic strains vs. SR. The visco-elastic strains of the specimens had approximately linear correlation with SR. The specimen with α = 90° fissure had the minimum visco-elastic strain, but the visco-elastic deformation of the specimen with α = 0° fissure was larger than of the other specimens. In contrast, the visco-elastic strain of the intact specimen was higher than those of the fissured specimens. However, the visco-plastic strains of the specimens nonlinearly increased with SR as shown in Fig. 9b, whose relationship can be described by a nonlinear fitting equation. It is also clear that the visco-plastic strains changed not significantly when SR was less (approximately 0.8).h g gi y ( pp y ) The relationship between the creep and total plastic strains of the specimens and the SR are shown in Fig. 10. In Fig. 10a, the creep strain increased nonlinearly with SR, which can be described by a fitting equation. Specifically, when SR was less than approximately 0.8, the creep slightly varied but significantly increased beyond that critical www.nature.com/scientificreports/ Figure 9. Relationships between visco-elastic and visco-plastic strains and stress ratio of the specimens. Figure 9. Damage and Permeability Evolution Behavior of Red Sandstone Containing a Sing Fissure D l i b h i f d d i i i l fi Damage evolution behavior of red sandstone containing a single fissure. To characterize the state properties of materials, the damage concept was firstly proposed by Kachanov41. Damage variable (D) can quan- titatively describe the deterioration degree of a material under changing stress state. However, it is difficult to measure D directly. Therefore, D is calculated using other physical or mechanical parameters of materials, such as elastic modulus, ultrasonic wave velocity, density and severity, energy, strain, and acoustic emission accumu- lates42. However, one vital principle to definite damage variables is that it should be easily measured to build a relationship with the macroscopic mechanical state. Materials undergoing elastic strain and visco-elastic strains can be recovered after unloading, but those undergoing visco-plastic and plastic strains cannot. Hence, the dam- age variable of the rock under cyclic loading-unloading conditions can be calculated using the ratio of non-elastic strain (instant plastic strain and visco-plastic strain), as shown in Eq. (2). Finally, D can be calculated by instan- taneous elastic and visco-elastic strains. ε ε ε ε ε ε ε ε ε ε = − = − + + = + + D 1 1 (2) e me cve m c mp cvp m c (2) where εe and ε represent the elastic strain and the total strain, respectivly; εme and εcve represent the instantaneous elastic strain and the visco-elastic strain, respectivly; and εm and εc represent the instantaneous strain and the creep strain of the specimen, respectivly.hf The results of D under different SRs are plotted in Fig. 13. From Fig. 13a, D increased with increasing axial SR generally. The damage of the intact specimen seemed relatively small. At identical SRs, the degree of damage to the rock specimen had no obvious relationship with the dip angle, as shown in Fig. 13b. It seems that the higher the stress level, the more serious the damage. LTS of red sandstone containing a single fissure. LTS is an important index to predict rock failure and for design engineering. This parameter is determined mainly by direct and indirect methods. Schmidtke and Lajtai43 reported that the minimum creep failure stress of granite under uniaxial compression was 60% of its uniaxial compressive strength. Szczepanik et al.44 found that dilatancy occurred when the loading was 70–80% of the uniaxial compressive strength, and this stress point can be regarded as its LTS. www.nature.com/scientificreports/ As the previous results mentioned above, the pre-existing fissure inclination had a visible effect on the deformation behavior of the rock. Specifically, the fissure dip angle affected the elastic and plastic strains and visco-elastic and visco-plastic strains of the rock specimens. It is evident in Fig. 12a that the instantaneous strains under deviatoric stresses of 100, 115, and 130 MPa had no obvious variations when α was less than 45° but decreased gradually with increasing dip angle. However, the instantaneous strain first increased as α increased from 0 to 30° and then decreased with an increasing dip angle under a deviatoric stress of 145 MPa. The higher the deviatoric stress, the larger the instantaneous strain.i h Figure 12b illustrates the variations in the instant elastic strains of the specimens vs. fissure dip angle. It seems that the downtrend of the instantaneous elastic strain became smaller as the deviatoric stress level increased when α was less than 45°. Beyond 45°, the instant elastic strains notably decreased. Because the specimens with 15°, 30°, and 45° fissure angles showed creep failure under stress level of 145 MPa, instantaneous elastic strains were unable Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Figure 11. Relationship between creep rate and stress ratio and the evolution of strain rate during creep. Figure 11. Relationship between creep rate and stress ratio and the evolution of strain rate during creep. to be separated. It seems that α had no obvious influence on the instantaneous plastic strains, creep strains, and visco-plastic strains, as shown in Fig. 12c,d,f. The visco-elastic strain seems to decrease with increasing dip angle. Damage and Permeability Evolution Behavior of Red Sandstone Containing a Single Fissure l i b h i f d d i i i l fi Damage and Permeability Evolution Behavior of Red Sandstone Containing a Sing Fissure D l i b h i f d d i i i l fi Generally, the determining method can be classified as (1) unsteady deformation method45; (2) the stress threshold method (σcd)46,47; and (3) the isochronal stress-strain curves method (ISSCM) according to the creep experimental results48–50. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Figure 12. Influence of fissure dip angle on the elastic, viscous and plastic deformations of the specimens. Figure 12. Influence of fissure dip angle on the elastic, viscous and plastic deformations of the specimens. Figure 13. Relationships between damage and stress ratio and dip angle. Figure 12. Influence of fissure dip angle on the elastic, viscous and plastic deformations of the specimens. Figure 13. Relationships between damage and stress ratio and dip angle. Figure 13. Relationships between damage and stress ratio and dip angle. Figure 13. Relationships between damage and stress ratio and dip angle. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 10 www.nature.com/scientificreports/ Figure 14. Isochronal stress ratio-strain curves of the specimens. Figure 14. Isochronal stress ratio-strain curves of the specimens Figure 14. Isochronal stress ratio-strain curves of the specimens. Figure 15. Characteristic stresses of the red sandstone. Figure 15. Characteristic stresses of the red sandstone. To better understand the influence of stress level on the long-term strength, the isochronal stress ratio-strain curves of the intact specimen and fissured rock with various fissure dip angles are plotted in Fig. 14. When SR was less than 0.86, the isochronal curves were linear. However, when SR was between 0.86 and 0.95, the axial strains significantly increased and deviated from the original linear relationships. Hence, the LTS of the red sandstone with a single fissure was the corresponding stress level at the SR range from 0.86 to 0.95 (Red dotted line in Fig. 14). In contrast, the isochronal stress-strain curves of the intact specimen were located to the right of those of the fissured specimens, showing much more apparent deformation. The turning point of the curve of the intact specimen was approximately 0.95. Moreover, according to the previous results of this study, the steady-state creep rates, visco-plastic strains, and the creep strains of the fissured red sandstones significantly increased when SR was larger than 0.8. These phenomena also suggested that SR = 0.8 can be regarded as the lifetime of the red sand- stone containing a single pre-existing fissure and SR = 0.9 for the intact specimen. This method can be termed as ‘critical feature point method’ (CFPM). pre-existing fissures. For specimens with a dip angle of 45° and 75°, tensile-shear cracks appeared on the left side of the pre-existing fissure. These two cracks were induced by the bending moment when shear anti-wing crack sliding occurred along the shear plane. Then, under the restriction of the confining pressure, shear friction occurred along the crack surface, showing a scratch on the surface, as shown at positions A and B. For the speci- men containing a fissure dip angle of 60°, axial loading was continually applied on the specimen after creep failure until new static stress was reached. After that, the axial deformation continued to increase. During this loading and short-term creep, new cracks appeared. The interpretation is that the pre-existing unfilled fissure closed after tertiary creep occurred and then subjected new stress until further creep stress occurred. During this bearing Damage and Permeability Evolution Behavior of Red Sandstone Containing a Sing Fissure D l i b h i f d d i i i l fi However, for the intact specimen, the LTS was larger than those of the fissured specimen. Finally, a series of characteristic stresses of the fissured red sandstone containing different fissure dip angles are classified in Fig. 15. i p gi g Under σ3 = 30 MPa condition, the failure stress under constant strain rate loading was larger than that at creep compression. Fissure dip angle had a great influence on the failure stress of the fissured rock. Both the peak devi- atoric stress and creep failure stress slightly decreased when the fissure dip angle increased from 0 to 30° and they had no obvious changes when the dip angle was 30° and 45°. However, the failure stresses increased significantly as the dip angle increased from 60° to 90°. The intact red sandstone had the highest failure stress, creep failure stress, and LTS compared to those of the fissure specimens. Therefore, it is clear that the fissure dip angle had a significant influence on the failure stresses on the fissured rock. Creep failure behavior of red sandstone containing a single fissure. The triaxial compression and creep failure modes of the intact and fissured red sandstones containing a single fissure are presented in Figs. 16 and 17. In Fig. 16, shear failure occurred in the intact specimen. A macro shear crack and two small tensile cracks appeared. The tensile cracks were induced by the bending moment when macro shear sliding occurred along the shear surface. The fissured specimens commonly showed shear anti-wing cracks. Figure 17 shows that the cracking patterns of the specimens are similar. Macro shear anti-wing cracks occurred at the pre-existing fissure tips. The anti-wing cracks connected the upper left and bottom right of the specimen and the tips of the Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ www.nature.com/scientificreports/ Figure 16. Short-term failure patterns of the intact and fissured red sandstone specimens (σ3 = 30 MPa). Figure 16. Short-term failure patterns of the intact and fissured red sandstone specimens (σ3 = 30 MPa). Figure 17. Creep failure patterns of the intact and fissured red sandstone specimens (σ3 = 30 MPa). igure 17. Creep failure patterns of the intact and fissured red sandstone specimens (σ3 = 30 MPa). pre-existing fissures. For specimens with a dip angle of 45° and 75°, tensile-shear cracks appeared on the left side of the pre-existing fissure. Damage and Permeability Evolution Behavior of Red Sandstone Containing a Sing Fissure D l i b h i f d d i i i l fi These two cracks were induced by the bending moment when shear anti-wing crack sliding occurred along the shear plane. Then, under the restriction of the confining pressure, shear friction occurred along the crack surface, showing a scratch on the surface, as shown at positions A and B. For the speci- men containing a fissure dip angle of 60°, axial loading was continually applied on the specimen after creep failure until new static stress was reached. After that, the axial deformation continued to increase. During this loading and short-term creep, new cracks appeared. The interpretation is that the pre-existing unfilled fissure closed after tertiary creep occurred and then subjected new stress until further creep stress occurred. During this bearing pre-existing fissures. For specimens with a dip angle of 45° and 75°, tensile-shear cracks appeared on the left side of the pre-existing fissure. These two cracks were induced by the bending moment when shear anti-wing crack sliding occurred along the shear plane. Then, under the restriction of the confining pressure, shear friction occurred along the crack surface, showing a scratch on the surface, as shown at positions A and B. For the speci- men containing a fissure dip angle of 60°, axial loading was continually applied on the specimen after creep failure until new static stress was reached. After that, the axial deformation continued to increase. During this loading and short-term creep, new cracks appeared. The interpretation is that the pre-existing unfilled fissure closed after tertiary creep occurred and then subjected new stress until further creep stress occurred. During this bearing Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 12 www.nature.com/scientificreports/ Figure 18. Permeability evolutions during three-stage creep progress. Figure 18. Permeability evolutions during three-stage creep progress. process, tensile strain concentration occurred at the ends of the closed tip and tensile force induced tensile cracks after creep failure. However, because of the confinement of the confining pressure, the generated tensile cracks could not be opened, so they were closed and shear sliding occurred. Finally, the tensile-shear failure model was formed. However, for the specimen with a 90° dip angle, the shear strain concentration mainly occurred around the tips of the pre-existing fissure. Therefore, shear cracks around the tips of the fissure appeared and connected the macro shear crack. In contrast, the intact specimen showed a continuous shear fracture. Permeability evolution behavior of red sandstone containing a single fissure.  During the long-term f h b l l f h d d l fi h Permeability evolution behavior of red sandstone containing a single fissure. During the long-term deformation process, the gas permeability evolution of the red sandstones containing a single pre-existing fissure with different dip angles are presented in Fig. 18 and Appendix 2. Clearly, the permeability varied with deviatoric stress and creep time. When the deviatoric stresses were applied and removed, the permeability immediately decreased and increased, respectively. Moreover, the permeability at unloading stages (visco-elastic recovery stage) was slightly more significant than that at loading stages (creep stage under deviatoric stress compression). The reason is that the specimens were compressed under different deviatoric stress levels, so the seepage channels were relative narrower than those at the hydrostatic state. Therefore, the corresponding permeability was relatively small. Generally, the permeability first decreased slightly and finally exhibited a sudden rise when the tertiary creep occurred during the multi-step loading and unloading process. Liu et al.51 reported that the permeability of Cox claystone showed similar evolution, but it had no variations when the deviatoric stress was applied under multi-step creep conditions.i Moreover, the permeability evolutions in the fissured red sandstone during the three-stage creep process were distinct. Generally, permeability increased with increasing axial strain, especially during accelerating creep stage. This suggests that the variation in permeability is not only governed by loading but is also influenced by the deformation. For specimens with fissure dip angles of 15°, 45°, and 75°, the permeability slightly increased during primary and secondary creep stage but significantly increased during the accelerating creep stage. However, for the specimen with 60° fissure dip angle, the permeability increased when applied creep loading. When the specimen started exhibiting primary creep, the permeability slightly decreased with time. The deformation suddenly increased and then increased at a decreasing rate during the primary creep stage. Correspondingly, the permeability also had an increment and then decreased with time. The result suggests that the permeability significantly depends on the rock deformation. When the deviatoric stress was applied, the seepage channels in the rock specimen are opened, so the permeability increased. However, the creep deformation narrowed the opened channels, thus decreasing the permeation. Damage and Permeability Evolution Behavior of Red Sandstone Containing a Sing Fissure D l i b h i f d d i i i l fi Therefore, it is clear that the pre-existing fissure had a considerable influence on the creep failure model of the specimen. Discussion I fl f Influence of pre-existing fissure. As reported previously, the strength of the sandstone can be decreased by pre-existing fissures compared with that of intact sandstones52–55. This is because of stress consecration at the tips of the pre-existing fissure and macro cracks formed easily than in the no pre-existing flaw sandstone. The normalized peak strength expressed by the ratio of the peak strength of the fissured sandstone to that of the 13 Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ Figure 19. Influence of fissure angle on normalized strength (σ1/σintact) of sandstone. Figure 19. Influence of fissure angle on normalized strength (σ1/σintact) of sandstone. Figure 20. A schematic diagram of the deviatoric stress, axial strain and permeability during loading/ unloading cycles (after Xu and Yang61). Figure 20. A schematic diagram of the deviatoric stress, axial strain and permeability during loading/ unloading cycles (after Xu and Yang61). intact sandstone increased as flaw angle increased as presented in Fig. 19a. From the view of damage mechanics, the pre-existing fissure can be viewed as initial damage. Kachanov41 defined simple damage from the view of the principle of effective stress based on the actual loading area of the material as shown in Eq. (3). The variation in the damage variable affected by the fissure angle is presented in Fig. 19b. During creep experiments, although the fissured sandstones were subjected to identical stresses, the effective stress in each specimen with different fissure angle was different. Higher effective stress was generated for lower flaw angles. As a result, the fissured sandstone with a lower flaw angle showed larger deformation than that in the specimen with a higher fissure angle. σ σ = = − = − D A A A A D 1 , (1 ) (3) D e e (3) where, A is the cross-section area of the material (A = 1962.71mm2), AD and Ae are the damaged and effective areas of the material under loading, respectively; and σ and σe represent the applied stress and the effective stress, respectively. Influence of loading/unloading cycle. In underground coal mining and tunnel excavations, rocks are usually subjected to loading/unloading cycles37,56,57. The long-term mechanical behaviors of the rocks under this loading condition are essential for designing and evaluating the long-term stability for engineering applications. The creep behavior is related to the fatigue effect58. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 Conclusions In this study, the elastic-viscoplastic deformation behaviors, LTS and gas permeability evolution during creep of intact and fissured red sandstones were investigated. Fissured specimens containing a single fissure with various fissure dip angles (0 to 90°, interval 15°) were produced first. Then, constant strain rate loading experiments and cyclic loading and unloading creep tests under a confinement of 30 MPa were conducted on the specimens. The conclusions obtained from the experimental results are listed as follows. (1) The irrecoverable axial deformation accumulated as the cyclic numbers of loading/unloading increased. The instantaneous elastic deformation had a linear correlation with SR. The visco-elastic deformation and the viscoplastic deformation had linear and nonlinear relationships with SR, respectively. When SRå 0.8 (fissured specimen) and 0.9 (intact specimen), the creep strains and the steady-state creep rates nonlinearly increased with stress ratio; two nonlinear fitting equations can describe the relationships between total plastic deformation and stress ratio.h (2) The instantaneous deformation, instant elastic deformations, and the visco-elastic deformations of the fissured rock decreased with fissure dip angle, especially when the dip angle was larger than 45°. However, the dip angle had no obvious influence on the instant plastic, visco-plastic and creep deformations. (2) The instantaneous deformation, instant elastic deformations, and the visco-elastic deformations of the fissured rock decreased with fissure dip angle, especially when the dip angle was larger than 45°. However, the dip angle had no obvious influence on the instant plastic, visco-plastic and creep deformations.hi gl (3) The damage variable defined by the elastic deformation increased approximately linearly with SR, but the fissure dip angle had no obvious effects. The long-term strength of the intact (LTS ≤ 0.95) and fissured sandstone (0.86 ≤ LTS ≤ 0.95) determined according to isochronal stress-strain curves was larger than that determined by the presented CFPM (LTS ≤ 0.9, LTS ≤ 0.8). The creep failure modes were mainly shear along anti-wing cracks for the fissured specimens, but the intact specimen showed a shear fracture.hi g gi (4) The permeability of the fissured sandstone showed stress and deformation dependence, decreasing with increasing loading and increasing with decreasing unloading and changing with time. During multi-step loading/unloading creep cycles, it first decreased and then showed a sudden rise when tertiary creep occurred. Moreover, the permeability increased slightly during primary and secondary creep stage but increased significantly during the accelerating creep stage under high SRs. Conclusions However, it gradually decreased during primary and secondary creep under low SR. www.nature.com/scientificreports/ irrecoverable deformation increased. Microcrack growth increased the crack density and crack length under constant loading. For fissured sandstones, local stress concentration and damage occurred at the tips of the pre-existing fissures. If the applied stresses generated a higher stress intensity factor than the fracture toughness, creep rupture appeared. Thus, the LTS of the fissured and intact sandstones under creep loading was less than its peak strength, and the permeability increased significantly (Fig. 20g,i). i Most of the previous investigations were performed for triaxial creep on intact rock specimens. However, this study presents a series of experimental results of the sandstone with pre-existing fissure under cyclic loading/ unloading conditions. The results suggest that flaw significantly reduces the LTS of the sandstone. Cyclic loading/ unloading increases the stress-induced damage and irrecoverable deformation. This study may provide a refer- ence for geoscience research and energy resources. Received: 28 February 2019; Accepted: 17 January 2020; Published: xx xx xxxx Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 References International Journal of Rock Mechanics and Mining Science 72, 54–60 (2014). 10. Zhou, X. P., Bi, J. & Qian, Q. H. Numerical simulation of crack growth and coalescence in rock-like materials containing multiple preexisting flaws. Rock Mechanics and Rock Engineering 48(3), 1097–1114 (2015). 10. Zhou, X. P., Bi, J. & Qian, Q. H. Numerical simulation of crack growth and coalescence in rock-like materials containing multiple preexisting flaws. Rock Mechanics and Rock Engineering 48(3), 1097–1114 (2015). p gl g g 11. Yang, S. Q., Huang, Y. H., Tian, W. L. & Zhu, J. B. An experimental investigation on strength, deformation and crack evolu b h f d l fl d l l ( ) l 11. Yang, S. Q., Huang, Y. H., Tian, W. L. & Zhu, J. B. An experimental investigation on strength, deformation and crack evolution behavior of sandstone containing two oval flaws under uniaxial compression. Engineering Geology 217, 35–48 (2017).f gl p g g gy ( ) 12. Yang, S. Q., Huang, Y. H., Tian, W. L., Yin, P. F. & Jing, H. W. Effect of high temperature on deformation failure behavior of g f specimen containing a single fissure under uniaxial compression. Rock Mechanics and Rock Engineering 52, 2087–2107 (2019) 13. Park, C. H. & Bobet, A. Crack coalescence in specimens with open and closed flaws: a comparison. International Journal of M h i d Mi i S i 46(5) 819 829 (2009) f specimen containing a single fissure under uniaxial compression. Rock Mechanics and Rock Engineering 52, 2087–2107 (2019). 3 Park C H & Bobet A Crack coalescence in specimens with open and closed flaws a comparison International Journal of Rock i 13. Park, C. H. & Bobet, A. Crack coalescence in specimens with open and closed flaws: a comparison. International Journal of Rock Mechanics and Mining Science. 46(5), 819–829 (2009).l 14. Yang, S. Q., Jing, H. W. & Cheng, L. Influences of pore pressure on short-term and creep mechanical behavior of red sandstone. Engineering Geology. 179, 10–23 (2014).f g g gy ( ) 5. Shalabi, F. I. FE analysis of time-dependent behavior of tunneling in squeezing ground using two different creep models. Tunnelling and Underground Space Technology 20(3), 271–279 (2004). g g gy ( ) 5. Shalabi, F. I. FE analysis of time-dependent behavior of tunneling in squeezing ground using two different creep models. Tunnelling and Underground Space Technology 20(3), 271–279 (2004). References 1. Ashby, M. F. & Hallam, S. D. The failure of brittle solids containing small cracks under compressive stress states. Acta Metallllur 34(3), 497–510 (1986). 2. Baud, P., Reuschle, T. & Charlez, P. An improved wing crack model for the deformation and failure of rock in compression International Journal of Rock Mechanics and Mining Science. 33(5), 539–542 (1996). J f g ( ), ( ) 3. Hoek, E. & Martin, C. D. Fracture initiation and propagation in intact rock-a review. Journal of Rock Mechanics and Geotechnical Engineering. 6(4), 287–300 (2014). f g 3. Hoek, E. & Martin, C. D. Fracture initiation and propagation in intact rock-a review. Journal of Rock Mechanics and Geotechnica Engineering. 6(4), 287–300 (2014). g g 4. Cao, P., Liu, T. Y., Pu, C. Z. & Lin, H. Crack propagation and coalescence of brittle rock-like specimens with pre-existing cracks in compression. Engineering Geology 187, 113–121 (2015). 5. Hoek, E. Strength of jointed rock masses. Geotechnique 33(3), 187–223 (1983). 5. Hoek, E. Strength of jointed rock masses. Geotechnique 33(3) g j q 6. Martin, C. D. & Christiansson, R. Estimating the potential for spalling around a deep nuclear waste repository in crystalline rock International Journal of Rock Mechanics and Mining Sciences 46(2), 219–28 (2009). 6. Martin, C. D. & Christiansson, R. Estimating the potential for spalling around a deep nuclear w International Journal of Rock Mechanics and Mining Sciences 46(2), 219–28 (2009). 7. Bobet, A. & Einstein, H. H. Fracture coalescence in rock-type materials under uniaxial and biaxial compression. International Journal of Rock Mechanics and Mining Science. 35(7), 863–889 (1998).l 7. Bobet, A. & Einstein, H. H. Fracture coalescence in rock-type materials under uniaxial and biaxial compression. Internationa Journal of Rock Mechanics and Mining Science. 35(7), 863–889 (1998).l Journal of Rock Mechanics and Mining Science. 35(7), 863–889 (19 f g ( ) ( ) 8. Sagong, M. & Bobet, A. Coalescence of multiple flaws in a rock-model material in uniaxial compression. International Journal of Rock Mechanics and Mining Science. 39(2), 229–241 (2002). f g 8. Sagong, M. & Bobet, A. Coalescence of multiple flaws in a rock-model material in uniaxial compression. International Journal of Rock Mechanics and Mining Science. 39(2), 229–241 (2002). g ( ) ( ) 9. Zhou, X. P., Shou, Y. D. & Qian, Q. H. Three-dimensional nonlinear strength criterion for rock-like materials based on the micromechanical method. Discussion I fl f Moreover, subcritical crack growth induced time-dependent damage plays a vital role until rupture59,60.h g p y p Sandstone is a clastic particle aggregate. The microcracks are distributed randomly and not all are entirely closed under hydrostatic stress state (Fig. 20a). When deviatoric stress is applied, the horizontal microc- racks are closed, and most of them can not be reopened. Consequently, the permeability reduces significantly (Fig. 20b). Mineral grain friction and micro-cracks are further closed under constant loading, and the specimens are deformed as time increases (Fig. 20c), whereas the permeability showed no distinct reduction. During the unloading state, when deviatoric stress was removed, the compacted grains were recovered, instant elastic defor- mation was released and visco-elastic deformation was also released with time, but some parts of irrecoverable deformation (instant plastic deformation and visco-plastic deformation) accumulated. Parts of horizontal cracks connected with vertical cracks were reopened, so the permeability also increased (Fig. 20d). With increasing loading/unloading cycles, the microcracks showed a cyclic close-reopen stage (Fig. 20e–f). The accumulated Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ References Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 www.nature.com/scientificreports/ 6. Guan, Z., Jiang, Y., Tanabashi, Y. & Huang, H. A new rheological model and its application in mountain tunnelling. Tunnelling and Underground Space Technology 23(3), 292–299 (2008). g p gy 7. Tsai, L. S., Hsieh, Y. M., Weng, M. C., Huang, T. H. & Jeng, F. S. Time-dependent deformation behaviors of weak sandstones International Journal of Rock Mechanics and Mining Science 45(2), 144–154 (2008). f g ( ) ( ) 8. Nadimi, S., Shahriar, K., Sharifzadeh, M. & Moarefvand, P. Triaxial creep tests and back analysis of time-dependent behavior of Siah f g 18. Nadimi, S., Shahriar, K., Sharifzadeh, M. & Moarefvand, P. Triaxial creep tests and back analysis of time-dependen Bisheh cavern by 3-Dimensional Distinct Element Method. Tunnelling and Underground Space Technology 26(1) 18. Nadimi, S., Shahriar, K., Sharifzadeh, M. & Moarefvand, P. Triaxial creep tests and back analysis of time-dependent behavior of Siah Bisheh cavern by 3-Dimensional Distinct Element Method. Tunnelling and Underground Space Technology 26(1), 155–162 (2011). p y p Bisheh cavern by 3-Dimensional Distinct Element Method. Tunnelling and Underground Space Technology 26(1), 155–162 (2011). y g g p gy 9. Sharifzadeh, M., Tarifard, A. & Moridi, M. A. Time-dependent behavior of tunnel lining in weak rock mass based on displacemen back analysis method. Tunnelling and Underground Space Technology 38(9), 348–356 (2013). 0. Atkinson, B. K. Subcritical crack-propagation in rocks – theory, experimental results and applications. Journal of Structure Geology 4(1), 41–56 (1982). 1. Boness, N. L. & Zoback, M. D. Mapping stress and structurally controlled crustal shear velocity anisotropy in California. Geology 34(10), 825–828 (2006). ( ), ( ) 2. Passelègue, F. X. et al. Development and Recovery of Stress-Induced Elastic Anisotropy During Cyclic Loading Experiment on 22. Passelègue, F. X. et al. Development and Recovery of Stress-Induced Elastic Anisotropy During Cyclic Loadi Westerly Granite. Geophysical Research Letters, 45, https://doi.org/10.1029/2018GL078434. (2018) ègue, F. X. et al. Development and Recovery of Stress-Induced Elastic Anisotropy During Cyclic Loading Experiment on rly Granite. Geophysical Research Letters, 45, https://doi.org/10.1029/2018GL078434. (2018) g , p y py g y g p Westerly Granite. Geophysical Research Letters, 45, https://doi.org/10.1029/2018GL078434. (2018) 23. Kranz, R. L. Crack growth and development during creep in Barre granite. International Journal of Rock Mechanics and Mining Science. 16(1), 23–35 (1979). 24. Carter, N. L., Anderson, D. A., Hansen, F. D. & Kranz, R. L. References Creep and long-term permeability of a red sandstone subjected to cyclic loading after thermal treatments. Rock Mechanics and Rock Engineering 51, 2981–3004 (2018). Mechanics and Rock Engineering 51, 2981–3004 (2018). g g 8. Yang, S. Q., Xu, P., Li, Y. B. & Huang, Y. H. Experimental investigation on triaxial mechanical and permeability behavior of sandstone after exposure to different high temperature treatments. Geothermics 69, 93–109 (2017).fh tf g 39. Chen, G. Gas slippage and Matrix Shrinkage Effects on Permeability of Coal. The University of Arizona, USA. PhD thesis. (19 h l l f f l d d k d 40. Hao, S. W., Liu, C., Wang, Y. C. & Chang, F. Q. Scaling law of average failure rate and steady-state rate in rocks. Pure and A Geophysics 174, 2199–2215 (2017). p y ( ) 41 Kachanov, L M Time of the rupture process under creep conditions Izv Akad Nauk S S R Otd Tech Nauk 8, 26–31 (1958) p y 41. Kachanov, L. M. Time of the rupture process under creep conditions. Izv Akad Nauk S S R Otd Tech Nauk 8, 26–31 (1958).i 42. Jin, J. F., Li, X. B., Yin, Z. Q. & Zou, Y. A method for defining rock damage variable by wave impedance under cyclic impact loa Chinese journal of Rock and Soil Mechanics, 32(5), 1385–1393+1410 (in Chinese) (2011).h j 43. Schmidtke, R. H. & Lajtai, E. Z. The long-term strength of lac du bonnet granite. International Journal of Rock Mechanics and Mining Sciences & Geomechanics Abstracts 22(6), 461–465 (1985). 44. Szczepanik Z, Milne D, Kostakis K, Eberhardt E. Long-Term laboratory strength tests in hard rock. ISRM 2003–Technology roadmap for rock mechanics, South African Institute of Mining and Metallurgy. (2003) g gy 5. Cui X, She CX. Study of viscoplastic strain rate method to quickly determine long-term strength of rock, Chinese Journal of Rock Mechanics and Engineering,30(S2): 3899–3904 (in Chinese) (2011) 45. Cui X, She CX. Study of viscoplastic strain rate method to quickly determine long-term stren Mechanics and Engineering,30(S2): 3899–3904 (in Chinese) (2011) 46. Damjanac, B. & Fairhurst, C. Evidence for a long-term strength threshold in crystalline rock. Rock Mechanics and Rock Engineering 43(5), 513–531 (2010). 7. Cui XH, Fu ZL. Experimental study on rheology properties and long-term strength of rocks. Chinese Journal of Rock Mechanic and Engineering, 25(5), 1021–1024. (in Chinese) (2006) g g 8. Chen, X. Z., Li, J. L., Chai, J. References Creep and creep rupture of granitic rocks. Mechanical Behavior of Crustal Rocks, Geophys. Monogr. Ser., vol. 24, edited by N. L. Carter et al., pp. 61–82, AGU, Washington, D. C, https://doi. org/10.1029/GM024p0061 (1981)l g 25. Matsushima, S. On the flow and fracture of igneous rocks. Bulletins - Disaster Prevention Research Institute, Kyoto University 36, 1–9 (1960). 6. Robertson, E. C. Creep in Solenhofen limestone under moderate hydrostatic Pressure. Geological Society America Memoirs 79(1) 227–244 (1960). ( ) 27. Scholz, C. H. Mechanism of creep in brittle rock. Journal of Geophysical Research 73(10), 3295–3302 (1968). H. Mechanism of creep in brittle rock. Journal of Geophysical Resear . Scholz, C. H. Mechanism of creep in brittle rock. Journal of Geoph 8. Kaiser, P. K. & Morgenstern, N. R. Time dependent deformation of jointed rock near failure. In: Proc. 4th ISRM Congress, 2-8 September, Montreux, Switzerland. (1979). 29. Hao, S. W., Zhang, B. J. & Tian, J. F. Derek Elsworth. Predicting time-to-failure in rock extrapolated from secondary creep. Jo of Geophysical Research Solid Earth 119, 1942–1953 (2014). f p y ( ) 30. Patton, T. L. & Fletcher, R. C. A rheological model for fractured rock. Journal of Structural Geology 20(20), 491–502 (1998). 1. Fabre, G. & Pellet, F. Creep and time-dependent damage in argillaceous rocks. International Journal of Rock Mechanics and Mining Sciences 6, 950–960 (2006). 32. Zhao, Y. L. et al. Creep behavior of intact and cracked limestone under multi-level loading and unloading cycles. Rock Mechanics and Rock Engineering 50(6), 1–16 (2017). g g 3. Chen, W. Z., Zhu, W. S. & Shao, J. F. Damage coupled time-dependent model of a jointed rock mass and application to large underground cavern excavation. International Journal of Rock Mechanics and Mining Sciences 41(4), 669–677 (2004). 4. Miura, K., Okui, Y. & Horii, H. Micromechanics-based prediction of creep failure of hard rock for long-term safety of high-leve radioactive waste disposal system. Mechanics of Materials 35(3), 587–601 (2003). p y f 5. Nara, Y. et al. Subcritical crack growth and long-term strength in rock and cementitious material. International Journal of Fracture 164(1), 57–71 (2010). 6. Chandler, N. A. Quantifying long-term strength and rock damage properties from plots of shear strain versus volume strain International Journal of Rock Mechanics and Mining Sciences 59, 105–110 (2013).t f g 7. Yang, S. Q. & Hu, B. Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 Competing interestsh p g The authors declare no competing interests. Acknowledgementsh Acknowledgements The research was supported by the Fundamental Research Funds for the Central Universities (2020ZDPYMS34). References Simulation of heterogeneity, creep, damage and lifetime for loaded brittle rocks. Tectonophysics 633, 164–175 (2014). 164 175 (2014). 60. Chen, W., Konietzky, H. & Abbas, S. M. Numerical simulation of time-independent and dependent fracturing in sandstone. Engineering Geology 193, 118–31 (2015). g g gy 61. Xu, P. & Yang, S. Q. Permeability evolution of sandstone under short-term and long-term triaxial compression. International Journal of Rock Mechanics & Mining Sciences 85, 152–164 (2016). References R & Bai, J. G. Shear creep characteristics and constitutive model for interlayer shear belt of high abutment slopes. Chinese Journal of Geotechnical Engineering, 35(9),1675–1682 (in Chinese) (2013). 49. Liu, L. & Xu, W. Experimental researches on long-term strength of granite gneiss. Advances in Materials Science and Engineering 2015(2), 1–9 (2015).f 50. Liu, Z. B., Xie, S. Y., Shao, J. F. & Conil, N. Effects of deviatoric stress and structural anisotropy on compressive creep behavior of a clayey rock. Applied Clay Science 114, 491–496 (2015). y y pp y 1. Liu, Z. B., Shao, J. F., Liu, T. G., Xie, S. Y. & Conil, N. Gas permeability evolution mechanism during creep of a low permeability claystone. Applied Clay Science 129, 47–53 (2016).i 52. Yang, S. Q. & Jing, H. W. Strength failure and crack coalescence behavior of brittle sandstone samples containing a single fissure under uniaxial compression. International Journal of Fracture 168(2), 227–250 (2011). 53. Dong, L. J. et al. Interval non-probabilistic reliability of surrounding jointed rockmass considering microseismic loads in mining tunnels. Tunnelling and Underground Space Technology 81, 326–335 (2018).l nnels. Tunnelling and Underground Space Technology 81, 326–335 (2 g g p gy 4. Yang, S. Q. et al. Experimental and discrete element modeling on cracking behavior of sandstone containing a single oval flaw under uniaxial compression. Engineering Fracture Mechanics 194(1), 154–174 (2018). 55. Lu, Y. L., Wang, L. G. & Elsworth, D. Uniaxial strength and failure in sandstone containing a pre-existing 3-D surface flaw. International Journal of Fracture 194(1), 59–79 (2015). 56. Fuenkajorn, K. & Phueakphum, D. Physical model simulation of shallow openings in jointed rock mass under static and cyclic loadings. Engineering Geology 113(1), 81–89 (2010).fi g g g gy 7. Liu, E. L. & He, S. M. Effects of cyclic dynamic loading on the mechanical properties of intact rock samples under confining pressure conditions. Engineering Geology 125(27), 81–91 (2012). Scientific Reports | (2020) 10:1900 | https://doi.org/10.1038/s41598-020-58595-2 16 www.nature.com/scientificreports/ 8. Attewell, P. B. Fatigue behaviour of rock. International Journal of Rock Mechanics and Mining Science Geomech Abstr 10(1), 1–9 (1973). 58. Attewell, P. B. Fatigue behaviour of rock. International Journal of Rock Mechanics and Mining Science Geomech Abstr 10(1), 1–9 (1973). 59. Chen, W. & Konietzky, H. Simulation of heterogeneity, creep, damage and lifetime for loaded brittle rocks. Tectonophysics 633, 164–175 (2014). (1973). 59. Chen, W. & Konietzky, H. Author contributions Author contributions Sheng-Qi Yang conceived and designed the experiments; Bo Hu performed the experiments and prepared all the figures; Sheng-Qi Yang and Bo Hu wrote the paper and analysed the data. Sheng-Qi Yang conceived and designed the experiments; Bo Hu performed the experiments and prepared all the figures; Sheng-Qi Yang and Bo Hu wrote the paper and analysed the data. Additional information Supplementary information is available for this paper at https://doi.org/10.1038/s41598-020-58595-2. Correspondence and requests for materials should be addressed to S.-Q.Y. Correspondence and requests for materials should be addressed to S.-Q.Y. Reprints and permissions information is available at www.nature.com/reprints. Reprints and permissions information is available at www.nature.com/reprints. Reprints and permissions information is available at www.nature.com/reprints. Reprints and permissions information is available at www.nature.com/reprints. ublisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and nstitutional affiliations. Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. 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Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction: A network meta-analysis of controlled clinical trials
PloS one
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Shixin Nie1,2, Shuqing Zhou3, Wei HuangID1,2* Shixin Nie1,2, Shuqing Zhou3, Wei HuangID1,2* 1 Department of Orthopedics, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China, 2 Orthopedic Laboratory of Chongqing Medical University, Chongqing, China, 3 Department of Orthopedics, The Centre Hospital of Jiangjin, Chongqing, China * huangwei68@263.net * huangwei68@263.net * huangwei68@263.net a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 PLOS ONE PLOS ONE RESEARCH ARTICLE Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files. Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files. Abstract Objective To compare the clinical effectiveness of cortical button (CB), cross-pin (CP) and compres- sion with interference screws (IS) fixation techniques in anterior cruciate ligament (ACL) reconstruction using hamstring graft. Methods Citation: Nie S, Zhou S, Huang W (2022) Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction: A network meta- analysis of controlled clinical trials. PLoS ONE 17(9): e0275097. https://doi.org/10.1371/journal. pone.0275097 Studies were systematically retrieved from PubMed, Embase, Cochrane Library and Web of Science up to May 20, 2021. Primary outcomes were KT-1000 assessment, International Knee Documentation Committee (IKDC) score A or B, Lachman’s test, pivot-shift test, visual analogue scale (VAS) score, Lysholm score, Tegner score, and Cincinnati Knee Score. Secondary outcomes included reconstruction failures and synovitis. League tables, rank probabilities and forest plots were drawn for efficacy comparison. Editor: Osama Farouk, Assiut University Faculty of Medicine, EGYPT Results Twenty-six controlled clinical trials (CCTs) with 1,824 patients undergoing ACL reconstruc- tion with hamstring graft were included. No significant differences were found among CB, CP and IS fixation methods regarding the 10 outcomes. For KT-1000 assessment, IKDC score A or B, Lachman’s test, VAS score and pivot-shift test, CP had the greatest probability of becoming the best method, and IS may be the suboptimal method in 4 out of these 5 out- comes except pivot-shift test. Copyright: © 2022 Nie et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Introduction Anterior cruciate ligament (ACL) rupture is a common knee ligament injury, which occurs more in the physically active population than in the general population [1]. This ACL injury can lead to pain, functional limitations, osteoarthritis after knee trauma, and reduced quality of life [2, 3]. In the United States, around 400,000 ACL reconstructions are carried out yearly [4]. Autologous hamstring graft is in widespread use and considered as the gold standard of ACL reconstruction, minimizing donor site morbidity [5–8]. However, hamstring graft move- ment within the femoral tunnel may impede tendon-to-bone healing, so having stable fixation is of great concern [9, 10]. Currently, femoral fixation methods for ACL reconstruction cover three categories: cortical button (CB) fixation, cross-pin (CP) fixation, compression with interference screws (IS) [11– 13]. As for an optimal fixation technique, Ibrahim et al. [14] proposed that CP femoral fixation brought greater knee laxity outcomes than CB fixation, while CB femoral fixation exhibited similar effects to CP fixation concerning clinical outcomes and postoperative knee laxity in autologous hamstring ACL reconstruction according to a meta-analysis of Jiang et al [15]. CP fixation was shown to have a smaller instrumented side-to-side anterior-posterior laxity differ- ence than IS fixation, but these two techniques demonstrated comparable performance for hamstring autograft [12]. In Bjo¨rkman et al.’s research, femoral fixation with CP and IS pro- vided a similar clinical or radiographic result in ACL reconstruction [16]. Additionally, CB fix- ation was superior to IS fixation for double-bundle ACL reconstruction [17], whereas equivalent impacts were obtained with IS and CB fixation in regard to knee anteroposterior stability and other aspects for all-inside ACL allograft reconstruction [18]. Unfortunately, no studies have reported direct comparisons among CB, CP and IS fixation measures for ACL reconstruction with hamstring graft, and which technique is the best remains unclear. Although a network meta-analysis from Yan et al. [19] revealed that IS femoral fixation may be the most preferred approach in ACL reconstruction, including different types of studies may lower the statistical power in this study. Thus, a latest network meta-analysis is needed to further probe into the optimum fixation method. Although a network meta-analysis from Yan et al. [19] revealed that IS femoral fixation may be the most preferred approach in ACL reconstruction, including different types of studies may lower the statistical power in this study. Thus, a latest network meta-analysis is needed to further probe into the optimum fixation method. Introduction This study aimed to explore a superior femoral fixation method by comparing the efficacy of CB, CP and IS techniques via a network meta-analysis of controlled clinical trials (CCTs) in ACL reconstruction with hamstring graft, which may serve as a reference in choosing a fixa- tion method for better rehabilitation. Conclusions CP, CB and IS fixations have comparable clinical performance, while CP fixation is most likely to be the optimum fixation technique for hamstring graft in ACL reconstruction. Future larger-sample studies of high quality comparing these techniques in more clinical outcomes are required. Funding: The author(s) received no specific funding for this work. Competing interests: The authors have declared that no competing interests exist. 1 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Search strategy and study selection Studies concerning fixation methods in ACL reconstruction were systematically retrieved from PubMed, Embase, Cochrane Library and Web of Science up to May 20, 2021 by two investigators (SX Nie, SQ Zhou) independently. Search terms consisted of “Anterior Cruciate Ligament” OR “Anterior Cruciate Ligament Reconstruction” OR “Anterior Cruciate Ligament Injuries” OR “Anterior Cruciate Ligaments” OR “Cruciate Ligament, Anterior” OR “Cruciate Ligaments, Anterior” OR “Ligament, Anterior Cruciate” OR “Ligaments, Anterior Cruciate” OR “ACL” AND “Surgical Fixation Devices” OR “Orthopedic Fixation Devices” OR “Device, Fixation” OR “Devices, Fixation” OR “Fixation Device” OR “Fixation Devices” OR “Fasteners” OR “Fastener” OR “Fixator” OR “Fixators” OR “Bone Screws” OR “Screw” OR “Screws” OR “TransFix” OR “Intrafix” OR “Aperfix” OR “Arthrex” OR “Biotransfix” OR “Endobutton” OR “Rigidfix”. Then these studies were imported into Endnote X9 (Clarivate Analytics, Philadel- phia, Pennsylvania, USA) for duplicate removal, and preliminary screening based on titles and PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 2 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction abstracts was carried out, followed by full-text screening, so as to obtain qualified studies. Dis- cussion was needed when opinions were divided. Outcome measures Primary outcomes were KT-1000 (MEDmetric Corp, San Diego, CA, USA) assessment, Inter- national Knee Documentation Committee (IKDC) score A or B [20], Lachman’s test [21], pivot-shift test [22], visual analogue scale (VAS) score [23], Lysholm score [24], Tegner score [25], and Cincinnati Knee Score [26]. Secondary outcomes included reconstruction failures and synovitis. Quality of evidence assessment The quality of evidence in pairwise effect estimates and overall ranking of femoral fixation methods was evaluated with the approach proposed by Salanti et al. [28] which was based on methodology developed by the Grading of Recommendations Assessment, Development and Evaluation (GRADE) Working Groups. Five domains were assessed: study limitations, indi- rectness, inconsistency, imprecision, and publication bias. Then the quality of evidence was divided into four levels: high, moderate, low and very low. Risk of bias assessment The risk of bias in each included CCT was evaluated applying the Cochrane Collaboration’s tool [27] by two reviewers separately (SX Nie, SQ Zhou). The domains for assessment included random sequence generation, allocation concealment, blinding of participants and personnel, blinding of outcome assessment, incomplete outcome data, selective reporting, and other bias. The risk of bias was categorized as low, unclear or high. Disagreements were resolved by a third researcher (W Huang). Inclusion and exclusion criteria Inclusion criteria were: (1) studies with patients undergoing ACL reconstruction with ham- string graft; (2) studies with interventions including  2 femoral fixation techniques; (3) stud- ies exploring at least one of the following outcomes; (4) studies in English; (5) CCTs. The interventions were divided into three categories: (1) CB (Endobutton, Ligament Anchor, Swing Bridge, Tightrope) fixation; (2) CP (Intrafix, Transfix, Rigid Fix, aperture fixa- tion) fixation; (3) IS (Metal Interference Screw, Bioabsorbable Interference Screw). Exclusion criteria were: (1) animal experiments; (2) publications that did not meet the research theme; (3) studies where valid data could not be extracted; (4) conference abstracts, case reports, editorial materials, reviews, and meta-analyses. Data extraction Two independent researchers (SX Nie, SQ Zhou) extracted baseline information from the eli- gible studies. The information included author, year of publication, country, level of evidence, femoral tunnel placing, femoral fixation, graft type, tibial fixation, sample size, age, gender ratio, time from injury to surgery, follow-up time, and outcome measure. A consensus was reached through discussion with a third researcher (W Huang). Characteristics of the included studies Based on the search strategy, 4,522 studies were identified from the four databases. After dupli- cates were removed, 2,421 studies were left. Following that, screening was carried out by read- ing titles and abstracts, and then full texts. Finally, 26 CCTs [14, 16, 18, 29–51] with 1,824 patients were qualified for next analysis. Detailed search process is illustrated in Fig 1. These included trials were published between 2002 and 2020, with 9 trials of CB vs CP [14, 29, 36, 37, 42, 43, 46, 48, 51], 9 of CB vs IS [18, 30–33, 35, 44, 45, 50], and 8 of CP vs IS [16, 34, 38–41, 47, 49]. Follow-up time ranged from 6 months to 60 months. Table 1 exhibits the baseline data of the included trials. The major risk of bias was selection bias from random sequence generation. The overall risk of bias of these studies was low. Risk of bias assessment for the qualified studies is shown in Fig 2. The quality of evidence in pairwise effect estimates ranged from very low to high, and most of pairwise comparisons had high quality of evidence. The overall ranking of femoral fixation methods for KT-1000 assessment, IKDC score A or B, Lachman’ s test, Pivot- shift test, and VAS score had moderate, high, high, high, and low quality of evidence, respec- tively (Table 2). Statistical analysis R 4.0.3 software (R Foundation for Statistical Computing, Vienna, Austria) was employed for the network meta-analysis, and conventional meta-analysis was conducted with Stata 15.1 3 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction software (Stata, College Station, Texas, USA). Odds ratios (ORs) acted as the effect size of cate- gorical outcomes, and standardized mean differences (SMDs) were used as the effect size of continuous outcomes. All estimates of these effect sizes reported were posterior medians with corresponding 95% credibility intervals (CrIs). When 95% CrIs excluded null values, signifi- cant effects of the femoral fixation methods on the different outcomes were identified. For each outcome measure, both fixed effects model and random effects model were initially fitted. Four Markov chains were adopted for every model to set initial values. The number of pre-iter- ations was set to 40,000, and the number of iteration operations was set to 200,000. The final model of each outcome was confirmed for subsequent analysis to attain the relative effects and ranking probabilities of different fixation measures in each outcome. In addition, the network plot, league table, rank probabilities and forest plot of each outcome measure were drawn. Node-split analysis was performed for consistency and inconsistency detection in direct and indirect comparisons when there was a closed loop. The strength of direct and indirect evi- dence was consistent if the difference between the deviance information criteria (DIC) of the consistency and inconsistency detection results was less than 5. P < 0.05 indicated a statisti- cally significant difference. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Network plots of fixation method comparisons Network plots were depicted to reflect comparisons among CB, CP and IS fixation techniques (Fig 3). Five studies provided data for KT-1000 assessment. Direct comparisons were available between CP and IS, and between CP and CB, but there was no direct comparison between IS and CB. Most studies were performed on CP, followed by CB; direct comparison evidence for CP and CB was most abundant. As to IKDC score A or B, 16 CCTs were included. Direct evi- dence on the pairwise comparison of CP, CB and IS was displayed, constituting a closed-loop relationship. Most studies were done on both CP and CB, and on the direct comparison of these two methods. A closed loop was also formed for CP, CB and IS in terms of Lachman’s test which was explored in 5 studies. CP fixation was reported in the majority of the 5 studies, and most evidence for direct comparison was offered on CP and IS. Pivot-shift test was con- ducted in 9 trials. With the direct pairwise comparison of the three techniques, a closed-loop relation came into being. Most of the studies focused on CB, and on the head-to-head compar- ison of CB and IS. Besides, 3 trials were conducted on VAS score. Direct comparisons existed PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 4 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Fig 1. Flow chart for search process. https://doi.org/10.1371/journal.pone.0275097.g001 Fig 1. Flow chart for search process. Fig 1. Flow chart for search process. https://doi.org/10.1371/journal.pone.0275097.g001 https://doi.org/10.1371/journal.pone.0275097.g001 https://doi.org/10.1371/journal.pone.0275097.g001 between CP and IS, and between IS and CB. Most trials investigated IS, followed by CB. Most direct evidence of comparison was available for IS and CB. According to the above, closed loops were formed for IKDC score A or B, Lachman’s test and pivot-shift test, and the results of node-split analysis indicated that the strength of the direct and indirect evidence was consis- tent (Table 3). League tables for fixation methods The efficacies of CP, CB and IS techniques on different outcomes were compared in pairs, as shown in Table 4. As regards KT-1000 assessment, no significant differences were observed between CP and CB (pooled OR = 3.725, 95% CrI = 0.407–55.092), between IS and CB (pooled OR = 2.054, 95% CrI = 0.031–113.409), and between IS and CP (pooled OR = 0.551, 95% CrI = 0.015–10.848). Likewise, the effectivity of these 3 methods were similar in other 4 5 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction PLOS ONE Table 1. Baseline characteristics of the included studies. Author Year Country Level of evidence Femoral tunnel placing Femoral fixation Graft type Tibial fixation Sample size Age, years Sex (male/ female) Time from injury to surgery Follow- up, months Outcome measure CB vs CP Fauno 2005 Denmark I CB STG PLLA IS 46 25 19/27 NA 12 KT-1000 assessment, IKDC score A/B CP Bi IS/SW 41 26 19/22 NA Kuskucu 2008 Turkey II Transtibial- femoral drilling CB STG IS and a staple 24 23.9 (21– 44) 0/24 2–8 m 26.7 (16–36) Lysholm score, IKDC score A/B, Tegner score CP 32 0/32 25.2 (12–36) Baumfeld 2008 USA II Transtibial drilling CB STG Intrafx 26 35.9 ±12.0 NA NA 41.8 ±13.4 KT-1000 assessment, IKDC score A/B, reconstruction failures CP Bio IS 20 36.2 ±11.8 45.2 ±12.6 Ibrahim 2009 Kuwait I Transtibial drilling CB SB and DB STG NA 98 (22– 33) NA 2–3.7 m 29 (25– 38) Pivot-shift test, Lysholm score, IKDC score A/B CP SB STG 102 (21– 31) 2–4 m Price 2010 Australia I Transtibial drilling CB STG Bio IS 11 26.5 (16– 47) NA NA 24 Lachman’s test, IKDC score A/B CP 13 26.3 (16– 48) Sabat 2011 India II Transtibial drilling CB STG Bio IS 30 (20– 40) NA 6 w-2 y 12 Lysholm score, IKDC score CP Eajazi 2013 Iran II CB SB STG IS 33 26.2 (18– 44) NA 14.5 (2– 80) m 24 Lysholm score, reconstruction failures CP 29 23.6 (19– 31) 14.1 (1– 84) m Zehir 2014 Turkey II Transtibial drilling CB STG Bio IS 67 NA NA 13.17 ±8.22 m 12 Lysholm score, IKDC score A/B, Tegner score, KT- 1000 assessment, pivot-shift test CP 51 9.74 ±4.12 m Ibrahim 2015 Kuwait II Transtibial drilling CB DB STG BioIntraFix 32 (22– 32) NA 2–4.2 m 30 Lachman’s test, pivot-shift test, KT- 1000 assessment, Lysholm score, IKDC score A/B CP 34 (21– 34) 2–4.5 m CB vs IS (Continued) Table 1. Baseline characteristics of the included studies. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 6 / 20 Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction PLOS ONE Table 1. (Continued) Author Year Country Level of evidence Femoral tunnel placing Femoral fixation Graft type Tibial fixation Sample size Age, years Sex (male/ female) Time from injury to surgery Follow- up, months Outcome measure IS Delta Screw 30 25.5 (13– 61) 20/10 Capuano 2008 France I CP ST/ STG Milagro 15 30.6 ±9.8 (15– 52) 10/5 16.9 ±14.7 (1–60) m 13.1 ±2.45 IKDC score A/B IS IS 15 32.3 ±9.5 (15– 49) 10/5 20.4 ±22.9 (1–74) m Harilainen (1) 2009 Finland I Transtibial drilling CP DB STG BioScrew/ IntraFix 28 31 (18– 50) 4 m (1 w-10 m) 24 IKDC score A/B IS 29 35 (20– 48) 3.5 m (1 w-35 m) Harilainen (2) CP 25 29 (18– 50) 4 m (1 w-32 m) IKDC score A/B IS 25 32 (18– 49) 3 m (1 w-8.25 y) Stengel 2009 Germany I Transtibial- femoral drilling CP ST/ STG RigidFix 24 31.4 ±12.2 NA NA 24 KT-1000 assessment, IKDC scores, synovitis IS Bio IS 21 26.1 ±10.4 Frosch 2012 Germany II CP ST/ STG Milagro IS 28 28.2 ±8.0 18/10 11.09 ±4.0 w 12.40 ±0.8 Tegner score, KT- 1000 assessment, VAS IS 31 24.6 ±7.2 19/12 14.91 ±3.4 w 12.45 ±1.1 Bjorkman 2014 Finland I Transtibial drilling CP SB STG AO Screw/ SW 25 NA NA NA 60 Lachman’s test, pivot-shift test IS SB ST/ STG 22 Gifstad 2014 Norway II Transtibial drilling CP STG WasherLoc 47 24 (18– 45) NA  6 w 24 KT-1000 assessment IS 46 CB: cortical button; CP: cross-pin; IS: interference screw; SB: single bundle; DB: double bundle; ST: semitendinosus; STG: semitendinosus and gracilis; SW: spiked washer; w: week; m: months; y: years; IKDC: International Knee Documentation Committee; VAS: visual analogue scale CB: cortical button; CP: cross-pin; IS: interference screw; SB: single bundle; DB: double bundle; ST: semitendinosus; STG: semitendinosus and gracilis; SW: spiked washer; w: week; m: months; y: years; IKDC: International Knee Documentation Committee; VAS: visual analogue scale. PLOS ONE Table 1. (Continued) Author Year Country Level of evidence Femoral tunnel placing Femoral fixation Graft type Tibial fixation Sample size Age, years Sex (male/ female) Time from injury to surgery Follow- up, months Outcome measure Buelow 2002 Australia II CB STG Bio IS 28 30.9 (17– 44) NA NA 24 KT-1000 assessment, IKDC score A/B, Cincinnati Knee Score IS 30 30.9 (17– 44) 17/13 Benjamin 2003 USA II CB STG IS 15 22±10 3/12 NA 39±8 (24–50) IKDC scores, KT differences IS 15 27±8 4/11 32±6 (24–40) Ping 2012 China II CB DB STG Bio IS 28 24.3 (18– 38) 17/11 NA 29.5 (12–46) Lachman’s test, pivot-shift test IS 35 25.5 (17– 40) 22/13 28.5 (12–48) Benea 2014 France I CB ST/ STG SutureButton 22 29.3 ±9 NA 25.7±46 m 6 VAS, IKDC score A/B IS 22 Lubowitz 2015 USA II CB STG Arthrex 21 40.2 ±11.9 11/20 NA 24 IKDC score A/B IS 22 41.6 ±9.1 9/18 Boutsiadis 2018 France III CB STG IS 151 31.0 ±10.8 89/62 3.7±1.6 m 25.8±4.3 IKDC score A/B, pivot-shift test IS 121 32.6 ±10.6 64/57 3.4±1.5 m 25.6±2.3 Chiang 2019 China II CB DB STG Cortical screw 28 29.5 ±5.7 26/2 NA 24 IKDC score, KT- 1000 assessment, pivot-shift test IS 29 30.3 ±6.9 28/1 Mayr 2019 Austria II CB STG IS 16 25±6 11/5 12 m 24 IKDC score A/B, pivot-shift test IS 14 29±7 10/4 Yari 2020 USA I CB STG Bio IS 17 37.7 ±5.3 8/9 NA 6 VAS, IKDC score IS 16 36.9 ±6.7 9/7 CP vs IS Harilainen 2005 Finland I CP SB STG Metal IS 26 27 (15– 56) NA 6 m (3 w-13 y) 24 Lachman’s test, pivot-shift test, KT- 1000 assessment, IKDC score A/B IS 30 32 (28– 49) 10 m (4 w-27 y) Rose 2006 Germany I Transtibial drilling CP STG Bone Plug 38 28.5 (15– 47) 22/16 NA 12 IKDC score A/B (Continued) PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 7 / 20 Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction PLOS ONE PLOS ONE Table 2. Summary of our confidence in effect estimates and ranking of femoral fixation methods. Outcomes Comparison Nature of the evidence Confidence Downgrading due to KT-1000 assessment CB vs CP Mixed High - CB vs IS Indirect Low Study limitations1; Indirectness2 CP vs IS Mixed Moderate Study limitations1 Ranking of treatments Moderate Study limitations5 IKDC score A or B CB vs CP Mixed High - CB vs IS Mixed Moderate Imprecision4 CP vs IS Mixed High - Ranking of treatments High - Lachman’ s test CB vs CP Mixed High - CB vs IS Mixed Low Imprecision4; Inconsistency3 CP vs IS Mixed High - Ranking of treatments High - Pivot-shift test CB vs CP Mixed High - CB vs IS Mixed Low Study limitations1; Inconsistency3 CP vs IS Mixed High - Ranking of treatments High - VAS score CB vs CP Indirect Very low Study limitations1; Imprecision4; Indirectness2 CB vs IS Mixed Moderate Inconsistency3 CP vs IS Mixed Low Study limitations1; Imprecision4 Ranking of treatments Low Study limitations1; Imprecision4 Table 2. Summary of our confidence in effect estimates and ranking of femoral fixation methods. 1Dominated by evidence at high or moderate risk of bias. 1Dominated by evidence at high or moderate risk of bias. 2No convincing evidence for the plausibility of the transitivity assumption. 3Predictive intervals for treatment effect include effects that would have different interpretations (there is additionally no convincing evidence for the plausibility of the transitivity assumption). 4Confidence intervals include values favoring either treatment. 560% of the information is from studies at moderate risk of bias. IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross-pin; IS: interference screw. h //d i /10 1371/j l 0275097 002 KDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross-pin; IS: interference screw. VAS score (CP vs CB: pooled SMD = 1.135, 95% CrI = -3.438–6.773; IS vs CB: pooled SMD = 0.862, 95% CrI = -1.829–4.541; IS vs CP: pooled SMD = -0.298, 95% CrI = -4.298– 3.715). Rank probabilities for fixation methods Rank probabilities were illustrated for CP, CB and IS fixation approaches (Tables 5–9). As for KT-1000 assessment, IKDC score A or B, Lachman’s test, VAS score and pivot-shift test, CP had the greatest probability of becoming the best method, and IS may be the suboptimal method in 4 out of 5 outcomes except pivot-shift test. PLOS ONE h //d i /10 1371/j l 0275097 001 outcomes: IKDC score A or B (CP vs CB: pooled OR = 1.838, 95% CrI = 0.868–3.743; IS vs CB: pooled OR = 1.554, 95% CrI = 0.673–3.781; IS vs CP: pooled OR = 0.841, 95% CrI = 0.380– 2.102), Lachman’s test (CP vs CB: pooled OR = 1.511, 95% CrI = 0.523–4.406; IS vs CB: pooled OR = 1.153, 95% CrI = 0.324–4.092; IS vs CP: pooled OR = 0.758, 95% CrI = 0.284–2.104), pivot-shift test (CP vs CB: pooled OR = 1.254, 95% CrI = 0.577–3.203; IS vs CB: pooled OR = 0.564, 95% CrI = 0.253–1.582; IS vs CP: pooled OR = 0.456, 95% CrI = 0.159–1.357), and PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 8 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Fig 2. Risk of bias assessment for the included studies. https://doi.org/10.1371/journal.pone.0275097.g002 pone.0275097 September 22, 2022 9 / 20 Fig 2. Risk of bias assessment for the included studies. https://doi.org/10.1371/journal.pone.0275097.g002 9 / 20 Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Forest plots for fixation methods According to the results of forest plots, CP and CB (CP vs CB: pooled OR = 3.800, 95% CrI = 0.410–58.000) as well as IS and CP (IS vs CP: pooled OR = 0.520, 95% CrI = 0.014– 10.000) exhibited comparable effects concerning KT-1000 assessment. For IKDC score A or B, no statistically significant differences existed between CP and CB (CP vs CB: pooled OR = 2.200, 95% CrI = 0.930–5.900), IS and CB (IS vs CB: pooled OR = 1.000, 95% CrI = 0.280–3.500), and IS and CP (IS vs CP: pooled OR = 1.200, 95% CrI = 0.440–6.200). PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 10 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Consistently, the equivalent effectiveness of CP and CB (CP vs CB: pooled OR = 1.600, 95% CrI = 0.490–5.700), IS and CB (IS vs CB: pooled OR = 0.760, 95% CrI = 0.076–5.900), and IS and CP (IS vs CP: pooled OR = 0.830, 95% CrI = 0.280–2.400) was demonstrated in Lachman’s Fig 3. Network plots of fixation method comparisons for various outcomes. 3A: KT-1000 assessment; 3B: IKDC score A or B; 3C: Lachman’s test; 3D: Pivot-shift test; 3E: VAS score. IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross- pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.g003 ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Fig 3 Net ork plots of fi ation method comparisons for arious outcomes 3A KT 1000 assessment 3B IKDC score A or B 3C Lachman’s test Fig 3. Network plots of fixation method comparisons for various outcomes. 3A: KT-1000 assessment; 3B: IKDC score A or B; 3C: Lachman’s test; 3D: Pivot-shift test; 3E: VAS score. IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross- f Fig 3. Network plots of fixation method comparisons for various outcomes. 3A: KT-1000 assessment; 3B: IKDC score A or B; 3C: Lachman’s test; 3D: Pivot-shift test; 3E: VAS score. IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross- pin; IS: interference screw. PLOS ONE PLOS ONE Table 3. Consistency and inconsistency detection for the outcomes. Outcomes DIC for consistency detection DIC for inconsistency detection Absolute value of ΔDIC IKDC score A or B 49.190 49.138 0.052 Lachman’ s test 13.889 13.938 0.049 Pivot-shift test 13.946 13.969 0.023 IKDC: International Knee Documentation Committee; DIC: deviance information criteria; ΔDIC: difference between the DIC of the consistency and inconsistency detection results. Table 3. Consistency and inconsistency detection for the outcomes. on Committee; DIC: deviance information criteria; ΔDIC: difference between the DIC of the consistency and inconsistency test. CP and CB (CP vs CB: pooled OR = 1.200, 95% CrI = 0.390–3.300), IS and CB (IS vs CB: pooled OR = 0.670, 95% CrI = 0.250–2.700), and IS and CP (IS vs CP: pooled OR = 0.310, 95% CrI = 0.036–1.700) also had similar impacts on pivot-shift test. In terms of VAS score, IS did not significantly differ from CB (IS vs CB: pooled SMD = 0.860, 95% CrI = -1.800–4.500) and CP (IS vs CP: pooled SMD = -0.300, 95% CrI = -4.300–3.700). Three studies reported on Lysholm score, and combined analysis revealed that CB presented similar efficacy to CP (CB vs CP: pooled OR = 1.220, 95% confidence interval (CI) = 0.460–3.240, P = 0.686). When reconstruction failures were taken into consideration, the comprehensive analysis of 2 studies indicated that there was no statistical difference between CB and CP (CB vs CP: pooled OR = 1.010, 95% CI = 0.390–2.670, P = 0.977). Forest plots for fixation methods https://doi.org/10.1371/journal.pone.0275097.g003 https://doi.org/10.1371/journal.pone.0275097.g003 Consistently, the equivalent effectiveness of CP and CB (CP vs CB: pooled OR = 1.600, 95% CrI = 0.490–5.700), IS and CB (IS vs CB: pooled OR = 0.760, 95% CrI = 0.076–5.900), and IS and CP (IS vs CP: pooled OR = 0.830, 95% CrI = 0.280–2.400) was demonstrated in Lachman’s Consistently, the equivalent effectiveness of CP and CB (CP vs CB: pooled OR = 1.600, 95% CrI = 0.490–5.700), IS and CB (IS vs CB: pooled OR = 0.760, 95% CrI = 0.076–5.900), and IS and CP (IS vs CP: pooled OR = 0.830, 95% CrI = 0.280–2.400) was demonstrated in Lachman’s 11 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Fixation methods for single or double bundle ACL reconstruction For KT-1000 assessment, only one study compared CP and IS fixation methods in single bun- dle ACL reconstruction, and no significant difference was found between CP and IS (OR = 0.833, 95% CI = 0.211–3.294, P = 0.795); there was no report on double bundle ACL reconstruction. Regarding IKDC score A or B, CP was shown to have a similar effect to IS in single bundle ACL reconstruction according to a single study (OR = 2.000, 95% CI = 0.525– 7.621, P = 0.310); network meta-analysis was performed for double bundle ACL reconstruc- tion based on 2 studies, and revealed that IS was significantly more effective than CB (pooled Table 4. League tables of fixation methods for various outcomes. KT-1000 assessment CB 3.725 (0.407, 55.092) 2.054 (0.031, 113.409) 1.315 (-0.898, 4.009) CP 0.551 (0.015, 10.848) 0.720 (-3.485, 4.731) 0.596 (-2.384, 4.205) IS IKDC score A or B CB 1.838 (0.868, 3.743) 1.554 (0.673, 3.781) -0.609 (-1.320, 0.142) CP 0.841 (0.380, 2.102) -0.441 (-1.330, 0.396) 0.173 (-0.743, 0.969) IS Lachman’s test CB 1.511 (0.523, 4.406) 1.153 (0.324, 4.092) -0.413 (-1.483, 0.648) CP 0.758 (0.284, 2.104) -0.142 (-1.409, 1.127) 0.277 (-0.744, 1.258) IS Pivot-shift test CB 1.254 (0.577, 3.203) 0.564 (0.253, 1.582) -0.226 (-1.164, 0.550) CP 0.456 (0.159, 1.357) 0.574 (-0.458, 1.373) 0.786 (-0.305, 1.838) IS VAS score CB 1.135 (-3.438, 6.773) 0.862 (-1.829, 4.541) -1.135 (-6.773, 3.438) CP -0.298 (-4.298, 3.715) -0.862 (-4.541, 1.829) 0.298 (-3.715, 4.298) IS IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross- pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t004 IKDC: International Knee Documentation Committee; VAS: visual analogue scale; CB: cortical button; CP: cross- pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t004 12 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction Table 5. Rank probabilities of fixation methods for KT-1000 assessment. [1] [2] [3] CB 0.088500 0.285750 0.625750 CP 0.581900 0.380725 0.037375 IS 0.329600 0.333525 0.336875 CB: cortical button; CP: cross-pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t005 Table 5. Rank probabilities of fixation methods for KT-1000 assessment. Table 6. Rank probabilities of fixation methods for IKDC score A or B. [1] [2] [3] CB 0.022513 0.153988 0.823500 CP 0.653313 0.314863 0.031825 IS 0.324175 0.531150 0.144675 IKDC: International Knee Documentation Committee; CB: cortical button; CP: cross-pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t006 Table 6. Rank probabilities of fixation methods for IKDC score A or B. Table 7. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Fixation methods for single or double bundle ACL reconstruction Rank probabilities of fixation methods for Lachman’s test. [1] [2] [3] CB 0.173313 0.287325 0.539363 CP 0.583563 0.329688 0.086750 IS 0.243125 0.382988 0.373888 CB: cortical button; CP: cross-pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t007 Table 7. Rank probabilities of fixation methods for Lachman’s test. Table 8. Rank probabilities of fixation methods for pivot-shift test. [1] [2] [3] CB 0.257175 0.650113 0.092713 CP 0.705275 0.249663 0.045063 IS 0.037550 0.100225 0.862225 CB: cortical button; CP: cross-pin; IS: interference screw. https://doi.org/10.1371/journal.pone.0275097.t008 Table 8. Rank probabilities of fixation methods for pivot-shift test. Table 9. Rank probabilities of fixation methods for VAS score. [1] [2] [3] CB 0.124785 0.203350 0.671865 CP 0.563155 0.235190 0.201655 IS 0.312060 0.561460 0.126480 VAS: visual analogue scale; CB: cortical button; CP: cross-pin; IS: interference screw. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 13 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction OR = 1.307, 95% CrI = 3.695, 62.929) and CP (pooled OR = 1.180, 95% CrI = 3.254–54.762), and CP was likely to be better than CB according to rank probabilities. Concerning Lachman’s test, 2 studies provided direct evidence for the comparison between CP and IS in single bundle ACL reconstruction, and meta-analysis demonstrated no significant difference between CP and IS (pooled OR = 1.175, 95% CI = 0.463–2.986, P = 0.734). Network meta-analysis with data from 2 trials for double bundle ACL reconstruction illustrated that CP, CB and IS had comparable impacts on Lachman’s test, and rank probabilities indicated that CP had the high- est probability of becoming the optimal method (64.77% probability), and CB was most likely to be the suboptimal method (52.89% probability). As to pivot-shift test, direct evidence from 2 studies on the comparison between CP and IS in single bundle ACL reconstruction exhibited equivalent effectiveness of CP and IS (pooled OR = 2.645, 95% CI = 0.637–10.984, P = 0.181); for double bundle ACL reconstruction, network meta-analysis of 3 trials showed no significant difference among CP, CB and IS, while CP was most likely to be the best fixation method (77.41% probability), and CB was most likely to be the second best method (53.75% probabil- ity). Besides, no studies about VAS score reported the technique used for ACL reconstruction (single bundle or double bundle). Fixation methods when placing the femoral tunnel via transtibial drilling Twelve studies reported the technique used for placing the femoral tunnel, and all of them used transtibial drilling. Among these 12 studies, 3 had KT-1000 assessment, and network meta-analysis exhibited that CP, CB and IS had similar influences on KT-1000 assessment, while CP was most likely to be the optimum fixation method (47.60% probability), and IS was most likely to be the suboptimum method (35.52% probability). Concerning IKDC score A or B, 8 trials provided data for comparisons among CP, CB and IS. It was found that IS was signif- icantly more effective than CB (pooled OR = 1.323, 95% CrI = 1.005–3.732), and IS had the greatest probability of becoming the best method (93.35% probability), and the second best method was most likely CP (85.49% probability). As regards Lachman’s test, 3 studies were included for network meta-analysis. No significant differences were observed among CP, CB and IS; IS was most likely to be the optimal method (53.31% probability), and CP was most likely to be the suboptimal method (51.90% probability). With respect to pivot-shift test, 4 stud- ies were qualified. Consequently, IS was significantly less effective than CB (pooled OR = 0.001, 95% CrI = 4.887×10−18–0.464) and CP (pooled OR = 0.001, 95% CrI = 4.887×10−18–0.441) for pivot-shift test, and CP had the highest likelihood of being the best method (58.87% probabil- ity). Of the 12 studies, none assessed VAS score. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Discussion The above findings reinforce the possibility of CP as the optimum fixation. Apart from the afore-mentioned studies [19, 52–55], the studies of Hu et al [12] and Jiang et al [15] also showed that IS and CB femoral fixations had equivalent impacts on clinical performance to CP femoral fixation for ACL reconstruction with hamstring graft. Similar effects of CP, IS and CB are confirmed using different analytical methods, and more investigations on the comparisons of these three techniques are necessary to validate that CP is most likely to be the best fixation technique. Among the included studies, regarding Tegner score, Kuskucu et al. [43] discovered that among 24 patients receiving CB fixation, 17 improved from level 4 to level 6 or 7, and the other patients remained at level 4 or 5. After CP fixation, 25 of 32 patients improved from level 4 to level 6 or 7, and the rest of patients remained at level 4 or 5. The Tegner score in the CB and CP groups was reported by Zehir et al. [51] to be comparable. Frosch et al. [38] showed that the average Tegner score was 5.83 points (±2.00) for IS fixation and 5.83 points (±1.24) for CP fixation, and no significant difference was found between the two groups. Since the data from the above studies cannot be synthesized, we only described the results of these stud- ies. Besides, merely Buelow et al. [33] studied the Cincinnati Knee Score of patients in the CB and IS groups during a 2-year follow-up period. The CB group increased from preoperative 44 ± 9.8 to 87 ± 8.9, and the IS group elevated from preoperative 46 ± 10.2 to 86 ± 8.5, without a significant difference between the two groups. Of note, Stengel et al. [49] reported 1 out of 28 patients undergoing CP fixation developed synovitis, and 4 out of 26 patients having IS fixa- tion suffered from synovitis, suggesting that patients receiving CP fixation might have a lower rate of adverse events than those with IS fixation in ACL reconstruction. This necessitates more research into adverse event occurrences after the three fixation methods. Discussion The current network meta-analysis found with 26 CCTs of 1,824 patients that CP, CB and IS displayed similar effects on different clinical outcomes in ACL reconstruction with hamstring graft, which was consistent with the findings of previous meta-analyses [52–54] and network meta-analyses [19, 55]. Nevertheless, CP may be more effective than CB and IS for hamstring graft fixation in ACL reconstruction according to rank probabilities analysis; based on this, CP may be prioritized in the femoral fixation of hamstring grafts for ACL reconstruction, so that more satisfactory recovery could be expected. The development of CP for femoral fixation in ACL reconstruction intends to deal with underlying problems linked to IS and CB techniques, with less anteroposterior laxity and suffi- cient mechanical strength [56, 57]. An instrumented side-to-side anterior-posterior laxity dif- ference was prominently reduced by CP versus IS, as reported by Hu and others [12]. This supports our revelation to a certain extent that CP had a higher probability of being better to PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 14 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction IS in fixing hamstring graft for ACL reconstruction, in terms of knee stability, pain, function and physical activities. The possible superiority of CP to IS concerning knee stability may be due to the fact that CP fixation is performed strictly because anchorage looseness is not allowed, while for IS, the looseness relevant to the tunnel wall occurs [49]. A systematic review reported that the failure rates of bioabsorbable IS, metallic IS and CP were 6.1, 3.3 and 1.7%, separately [58], indicating that CP with a higher success rate can be selected before IS. Addi- tionally, compared with CP femoral fixation, IS was associated with a markedly higher risk of ACL revision for patients receiving ACL reconstruction [59]. Furthermore, CP may be more efficacious than CB in femoral fixation for hamstring ACL reconstruction in this paper. A meta-analysis by Lee et al. [60] demonstrated more femoral tunnel widening after applying CB fixation than CP fixation to reconstruct ACL. CB fixation was also in association with more laxity compared with CP [30]. Tunnel widening possibly links to knee laxity and graft failure [61], and consequently requires a staged revision through bone grafting [62], which is not con- ducive to the recovery of patients suffering from torn ACL. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 Discussion Given the high- est likelihood of CP femoral fixation being the optimal method in hamstring graft for ACL reconstruction as regards clinical efficacy, together with safety, surgeons may give priority to CP fixation when performing ACL reconstruction, combined with their experience and profi- ciency as well as the cost of surgery, so that patients could get better rehabilitation under their timely and effective decision-making. With respect to the technique used for ACL reconstruction (single bundle or double bun- dle) and the technique used for placing the femoral tunnel (transtibial or transportal or out- side-in), 8 studies reported the technique used for ACL reconstruction; 12 studies reported the technique used for placing the femoral tunnel, and all of them applied transtibial drilling. Based on the above information, we have assessed the effect of the femoral fixation methods on the outcomes under these reported ACL reconstruction and femoral tunnel placing tech- niques. For pivot-shift test under double bundle ACL reconstruction and KT-1000 assessment under the transtibial drilling technique, CP, CB and IS exerted similar influences, while CP PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 15 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction was most likely to be the optimum fixation method, which was consistent with our main find- ings, indicating that these techniques might have no effects on pivot-shift test under double bundle ACL reconstruction and KT-1000 assessment under transtibial drilling. However, this is just a conjecture, and we cannot determine whether these techniques have effects on the out- comes, because most studies did not report on these techniques. Relevant studies should pro- vide complete information on ACL reconstruction and femoral tunnel placing techniques, so that the impact of these techniques on the outcomes can be assessed and a better femoral fixa- tion method can be offered to patients undergoing ACL reconstruction with hamstring graft for better recovery. Through this network meta-analysis of CCTs, CP fixation was recommended as the first choice to fix hamstring grafts in ACL reconstruction. Nonetheless, certain limitations cannot be ignored. First, the included studies did not provide direct evidence for comparisons among CP, CB and IS on some outcome measures, and there was subjectivity in the outcome evalua- tion. Discussion Besides, this analysis could not determine whether the technique used for ACL recon- struction (single bundle or double bundle) and the technique used for placing the femoral tunnel (transtibial or transportal or outside-in) have effects on the outcomes, since most stud- ies did not report on these techniques. Second, heterogeneity probably from different fixation devices, surgical methods and follow-up time was not addressed. Further, studies in other lan- guages were not included. Third, for KT-1000 assessment, the comparison of CB and IS was based on indirect evidence of low confidence, and for VAS score, the comparison of CB and CP was based on indirect evidence of very low confidence, which may affect the reliability of the comparison results that IS may be better than CB for KT-1000 assessment and CP may be better than CB for VAS score. Future high-quality evidence is warranted to verify these results. S1 Checklist. PRISMA 2020 checklist. (DOCX) S1 Checklist. PRISMA 2020 checklist. (DOCX) S1 Checklist. PRISMA 2020 checklist. (DOCX) Conclusion CP, CB and IS fixations exhibit similar clinical performance, whereas CP fixation has the great- est probability of being more effective than CB and IS for hamstring graft in ACL reconstruc- tion. This study underscores the need for further larger-sample studies of high quality to compare the impacts of these techniques on more clinical outcomes. Supporting information S1 Checklist. PRISMA 2020 checklist. (DOCX) PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 References 1. Moses B, Orchard J, Orchard J. Systematic review: Annual incidence of ACL injury and surgery in vari- ous populations. Res Sports Med. 2012; 20(3–4):157–79. https://doi.org/10.1080/15438627.2012. 680633 PMID: 22742074 2. Whittaker JL, Woodhouse LJ, Nettel-Aguirre A, Emery CA. Outcomes associated with early post-trau- matic osteoarthritis and other negative health consequences 3–10 years following knee joint injury in youth sport. Osteoarthritis Cartilage. 2015; 23(7):1122–9. https://doi.org/10.1016/j.joca.2015.02.021 PMID: 25725392 3. Mouton C, Moksnes H, Janssen R, Fink C, Zaffagnini S, Monllau JC, et al. Preliminary experience of an international orthopaedic registry: the ESSKA Paediatric Anterior Cruciate Ligament Initiative (PAMI) registry. J Exp Orthop. 2021; 8(1):45. https://doi.org/10.1186/s40634-021-00366-7 PMID: 34173077 4. Murray MM. Optimizing outcomes of ACL surgery-Is autograft reconstruction the only reasonable option? J Orthop Res. 2021. https://doi.org/10.1002/jor.25128 PMID: 34191344 5. Pinczewski L, Roe J, Salmon L. Why autologous hamstring tendon reconstruction should now be con- sidered the gold standard for anterior cruciate ligament reconstruction in athletes. Br J Sports Med. 2009; 43(5):325–7. https://doi.org/10.1136/bjsm.2009.058156 PMID: 19224910 6. Domnick C, Garcia P, Raschke MJ, Glasbrenner J, Lodde G, Fink C, et al. Trends and incidences of lig- ament-surgeries and osteotomies of the knee: an analysis of German inpatient records 2005–2013. Arch Orthop Trauma Surg. 2017; 137(7):989–95. https://doi.org/10.1007/s00402-017-2704-0 PMID: 28466182 7. Petersen W, Zantop T. Return to play following ACL reconstruction: survey among experienced arthro- scopic surgeons (AGA instructors). Arch Orthop Trauma Surg. 2013; 133(7):969–77. https://doi.org/10. 1007/s00402-013-1746-1 PMID: 23604790 8. Yasuda K, Tsujino J, Ohkoshi Y, Tanabe Y, Kaneda K. Graft site morbidity with autogenous semitendi- nosus and gracilis tendons. Am J Sports Med. 1995; 23(6):706–14. https://doi.org/10.1177/ 036354659502300613 PMID: 8600739 9. Weimann A, Rodieck M, Zantop T, Hassenpflug J, Petersen W. Primary stability of hamstring graft fixa- tion with biodegradable suspension versus interference screws. Arthroscopy. 2005; 21(3):266–74. https://doi.org/10.1016/j.arthro.2004.10.011 PMID: 15756178 10. Ho¨her J, Livesay GA, Ma CB, Withrow JD, Fu FH, Woo SL. Hamstring graft motion in the femoral bone tunnel when using titanium button/polyester tape fixation. Knee Surg Sports Traumatol Arthrosc. 1999; 7(4):215–9. https://doi.org/10.1007/s001670050151 PMID: 10462210 11. Hagemans FJA, Jonkers FJ, van Dam MJJ, von Gerhardt AL, van der List JP. Clinical and Radiographic Outcomes of Anterior Cruciate Ligament Reconstruction With Hamstring Tendon Graft and Femoral Cortical Button Fixation at Minimum 20-Year Follow-up. Am J Sports Med. 2020; 48(12):2962–9. https://doi.org/10.1177/0363546520951796 PMID: 32941081 12. Hu B, Shen W, Zhou C, Meng J, Wu H, Yan S. Author Contributions Conceptualization: Shixin Nie, Wei Huang. Formal analysis: Shuqing Zhou. Investigation: Shuqing Zhou. Methodology: Shuqing Zhou. PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 16 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction References Reliability of the anterior drawer test, the pivot shift test, and the Lachman test. Clin Orthop Relat Res. 1995;(317):237–42. 22. Ayeni OR, Chahal M, Tran MN, Sprague S. Pivot shift as an outcome measure for ACL reconstruction: a systematic review. Knee Surg Sports Traumatol Arthrosc. 2012; 20(4):767–77. https://doi.org/10. 1007/s00167-011-1860-y PMID: 22218828 23. Kersten P, White PJ, Tennant A. Is the pain visual analogue scale linear and responsive to change? An exploration using Rasch analysis. PloS One. 2014; 9(6):e99485. https://doi.org/10.1371/journal.pone. 0099485 PMID: 24921952 24. Briggs KK, Lysholm J, Tegner Y, Rodkey WG, Kocher MS, Steadman JR. The reliability, validity, and responsiveness of the Lysholm score and Tegner activity scale for anterior cruciate ligament injuries of the knee: 25 years later. Am J Sports Med. 2009; 37(5):890–7. https://doi.org/10.1177/ 0363546508330143 PMID: 19261899 25. Tegner Y, Lysholm J. Rating systems in the evaluation of knee ligament injuries. Clin Orthop Relat Res. 1985;(198):43–9. PMID: 4028566 26. Risberg MA, Holm I, Steen H, Beynnon BD. Sensitivity to changes over time for the IKDC form, the Lysholm score, and the Cincinnati knee score. A prospective study of 120 ACL reconstructed patients with a 2-year follow-up. Knee Surg Sports Traumatol Arthrosc. 1999; 7(3):152–9. https://doi.org/10. 1007/s001670050140 PMID: 10401651 27. Higgins JP, Altman DG, Gøtzsche PC, Ju¨ni P, Moher D, Oxman AD, et al. The Cochrane Collabora- tion’s tool for assessing risk of bias in randomised trials. BMJ. 2011; 343:d5928. https://doi.org/10.1136/ bmj.d5928 PMID: 22008217 28. Salanti G, Del Giovane C, Chaimani A, Caldwell DM, Higgins JP. Evaluating the quality of evidence from a network meta-analysis. PLoS One. 2014 Jul 3; 9(7):e99682. https://doi.org/10.1371/journal. pone.0099682 PMID: 24992266 29. Baumfeld JA, Diduch DR, Rubino LJ, Hart JA, Miller MD, Barr MS, et al. Tunnel widening following ante- rior cruciate ligament reconstruction using hamstring autograft: a comparison between double cross-pin and suspensory graft fixation. Knee Surg Sports Traumatol Arthrosc. 2008; 16(12):1108–13. https://doi. org/10.1007/s00167-008-0606-y PMID: 18791702 30. Benea H, d’Astorg H, Klouche S, Bauer T, Tomoaia G, Hardy P. Pain evaluation after all-inside anterior cruciate ligament reconstruction and short term functional results of a prospective randomized study. Knee. 2014; 21(1):102–6. https://doi.org/10.1016/j.knee.2013.09.006 PMID: 24269603 31. Ma CB, Francis K, Towers J, Irrgang J, Fu FH, Harner CH. Hamstring anterior cruciate ligament recon- struction: a comparison of bioabsorbable interference screw and endobutton-post fixation. Arthroscopy. 2004; 20(2):122–8. https://doi.org/10.1016/j.arthro.2003.11.007 PMID: 14760343 32. Boutsiadis A, Panisset JC, Devitt BM, Mauris F, Barthelemy R, Barth J. References Cross Pin Versus Interference Screw for Femoral Graft Fixation in Hamstring Anterior Cruciate Ligament Reconstruction: A Systematic Review and Meta-anal- ysis of Clinical Outcomes. Arthroscopy. 2018; 34(2):615–23. https://doi.org/10.1016/j.arthro.2017.07. 031 PMID: 29066266 13. Meyer DC, Stalder M, Koch PP, Snedeker JG, Farshad M. Contact pressure on ACL hamstring grafts in the bone tunnel with interference screw fixation—dynamic adaptation under load. Knee. 2012; 19 (5):676–9. https://doi.org/10.1016/j.knee.2011.11.005 PMID: 22197631 14. Ibrahim SA, Abdul Ghafar S, Marwan Y, Mahgoub AM, Al Misfer A, Farouk H, et al. Intratunnel versus extratunnel autologous hamstring double-bundle graft for anterior cruciate ligament reconstruction: a comparison of 2 femoral fixation procedures. Am J Sports Med. 2015; 43(1):161–8. https://doi.org/10. 1177/0363546514554189 PMID: 25349264 15. Jiang H, Ma G, Li Q, Hu Y, Li J, Tang X. Cortical Button Versus Cross-pin Femoral Fixation for Ham- string Anterior Cruciate Ligament Reconstruction: A Meta-analysis of Randomized Controlled Trials. Am J Sports Med. 2018; 46(9):2277–84. https://doi.org/10.1177/0363546517717672 PMID: 28753392 16. Bjo¨rkman P, Sandelin J, Harilainen A. A randomized prospective controlled study with 5-year follow-up of cross-pin femoral fixation versus metal interference screw fixation in anterior cruciate ligament recon- struction. Knee Surg Sports Traumatol Arthrosc. 2015; 23(8):2353–9. https://doi.org/10.1007/s00167- 014-3063-9 PMID: 24832696 17. Lehmann AK, Osada N, Zantop T, Raschke MJ, Petersen W. Femoral bridge stability in double-bundle ACL reconstruction: impact of bridge width and different fixation techniques on the structural properties of the graft/femur complex. Arch Orthop Trauma Surg. 2009; 129(8):1127–32. https://doi.org/10.1007/ s00402-009-0869-x PMID: 19357859 17 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction 18. Lubowitz JH, Schwartzberg R, Smith P. Cortical Suspensory Button Versus Aperture Interference Screw Fixation for Knee Anterior Cruciate Ligament Soft-Tissue Allograft: A Prospective, Randomized Controlled Trial. Arthroscopy. 2015; 31(9):1733–9. https://doi.org/10.1016/j.arthro.2015.03.006 PMID: 25911394 19. Yan L, Li JJ, Zhu Y, Liu H, Liu R, Zhao B, et al. Interference screws are more likely to perform better than cortical button and cross-pin fixation for hamstring autograft in ACL reconstruction: a Bayesian net- work meta-analysis. Knee Surg Sports Traumatol Arthrosc. 2021; 29(6):1850–61. https://doi.org/10. 1007/s00167-020-06231-x PMID: 32813044 20. Irrgang JJ, Anderson AF, Boland AL, Harner CD, Kurosaka M, Neyret P, et al. Development and valida- tion of the international knee documentation committee subjective knee form. Am J Sports Med. 2001; 29(5):600–13. https://doi.org/10.1177/03635465010290051301 PMID: 11573919 21. Kim SJ, Kim HK. References Anterior Laxity at 2 Years After Anterior Cruciate Ligament Reconstruction Is Comparable When Using Adjustable-Loop Suspensory Fixation and Interference Screw Fixation. Am J Sports Med. 2018; 46(10):2366–75. https://doi.org/10. 1177/0363546518784005 PMID: 30015501 33. Buelow JU, Siebold R, Ellermann A. A prospective evaluation of tunnel enlargement in anterior cruciate ligament reconstruction with hamstrings: extracortical versus anatomical fixation. Knee Surg Sports Traumatol Arthrosc. 2002; 10(2):80–5. https://doi.org/10.1007/s00167-001-0267-6 PMID: 11914764 34. Capuano L, Hardy P, Longo UG, Denaro V, Maffulli N. No difference in clinical results between femoral transfixation and bio-interference screw fixation in hamstring tendon ACL reconstruction. A preliminary study. Knee. 2008; 15(3):174–9. 35. Chiang ER, Chen KH, Chih-Chang Lin A, Wang ST, Wu HT, Ma HL, et al. Comparison of Tunnel Enlargement and Clinical Outcome Between Bioabsorbable Interference Screws and Cortical Button- Post Fixation in Arthroscopic Double-Bundle Anterior Cruciate Ligament Reconstruction: A Prospective, Randomized Study With a Minimum Follow-Up of 2 Years. Arthroscopy. 2019; 35(2):544–51. https:// doi.org/10.1016/j.arthro.2018.08.039 PMID: 30712629 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 18 / 20 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction 36. Eajazi A, Madadi F, Madadi F, Boreiri M. Comparison of different methods of femoral fixation anterior cruciate ligament reconstruction. Acta medica Iranica. 2013; 51(7):444–8. PMID: 23945887 37. Fauno P, Kaalund S. Tunnel widening after hamstring anterior cruciate ligament reconstruction is influ- enced by the type of graft fixation used: a prospective randomized study. Arthroscopy. 2005; 21 (11):1337–41. https://doi.org/10.1016/j.arthro.2005.08.023 PMID: 16325084 38. Frosch S, Rittstieg A, Balcarek P, Walde TA, Schu¨ttrumpf JP, Wachowski MM, et al. Bioabsorbable interference screw versus bioabsorbable cross pins: influence of femoral graft fixation on the clinical outcome after ACL reconstruction. Knee Surg Sports Traumatol Arthrosc. 2012; 20(11):2251–6. https:// doi.org/10.1007/s00167-011-1875-4 PMID: 22290125 39. Gifstad T, Drogset JO, Grøntvedt T, Hortemo GS. Femoral fixation of hamstring tendon grafts in ACL reconstructions: the 2-year follow-up results of a prospective randomized controlled study. Knee Surg Sports Traumatol Arthrosc. 2014; 22(9):2153–62. https://doi.org/10.1007/s00167-013-2652-3 PMID: 24005332 40. Harilainen A, Sandelin J, Jansson KA. Cross-pin femoral fixation versus metal interference screw fixa- tion in anterior cruciate ligament reconstruction with hamstring tendons: results of a controlled prospec- tive randomized study with 2-year follow-up. Arthroscopy. 2005; 21(1):25–33. https://doi.org/10.1016/j. arthro.2004.09.013 PMID: 15650663 41. Harilainen A, Sandelin J. A prospective comparison of 3 hamstring ACL fixation devices—Rigidfix, Bio- Screw, and Intrafix—randomized into 4 groups with 2 years of follow-up. Am J Sports Med. 2009; 37 (4):699–706. References https://doi.org/10.1177/0363546508328109 PMID: 19188561 42. Ibrahim SA, Hamido F, Al Misfer AK, Mahgoob A, Ghafar SA, Alhran H. Anterior cruciate ligament reconstruction using autologous hamstring double bundle graft compared with single bundle proce- dures. J Bone Joint Surg Br. 2009; 91(10):1310–5. https://doi.org/10.1302/0301-620X.91B10.21886 PMID: 19794165 43. Kuskucu SM. Comparison of short-term results of bone tunnel enlargement between EndoButton CL and cross-pin fixation systems after chronic anterior cruciate ligament reconstruction with autologous quadrupled hamstring tendons. J Int Med Res. 2008; 36(1):23–30. https://doi.org/10.1177/ 147323000803600104 PMID: 18230264 44. Mayr R, Smekal V, Koidl C, Coppola C, Eichinger M, Rudisch A, et al. ACL reconstruction with adjust- able-length loop cortical button fixation results in less tibial tunnel widening compared with interference screw fixation. Knee Surg Sports Traumatol Arthrosc. 2020; 28(4):1036–44. https://doi.org/10.1007/ s00167-019-05642-9 PMID: 31372680 45. Ping LW, Bin S, Rui Y, Yang S, Zheng ZZ, Yue D. Arthroscopic ACL reconstruction with reverse "Y"- plasty grafts and fixation in the femur with either a bioabsorbable interference screw or an Endobutton. Knee. 2012; 19(2):78–83. https://doi.org/10.1016/j.knee.2010.10.010 PMID: 21159514 46. Price R, Stoney J, Brown G. Prospective randomized comparison of endobutton versus cross-pin femo- ral fixation in hamstring anterior cruciate ligament reconstruction with 2-year follow-up. ANZ J Surg. 2010; 80(3):162–5. https://doi.org/10.1111/j.1445-2197.2009.05128.x PMID: 20575918 47. Rose T, Hepp P, Venus J, Stockmar C, Josten C, Lill H. Prospective randomized clinical comparison of femoral transfixation versus bioscrew fixation in hamstring tendon ACL reconstruction—a preliminary report. Knee Surg Sports Traumatol Arthrosc. 2006; 14(8):730–8. https://doi.org/10.1007/s00167-006- 0034-9 PMID: 16465537 48. Sabat D, Kundu K, Arora S, Kumar V. Tunnel widening after anterior cruciate ligament reconstruction: a prospective randomized computed tomography—based study comparing 2 different femoral fixation methods for hamstring graft. Arthroscopy. 2011; 27(6):776–83. https://doi.org/10.1016/j.arthro.2011. 02.009 PMID: 21624672 49. Stengel D, Casper D, Bauwens K, Ekkernkamp A, Wich M. Bioresorbable pins and interference screws for fixation of hamstring tendon grafts in anterior cruciate ligament reconstruction surgery: a randomized controlled trial. Am J Sports Med. 2009; 37(9):1692–8. https://doi.org/10.1177/0363546509333008 PMID: 19483077 50. Yari SS, El Naga AN, Patel A, Qadeer AA, Shah A. TightRope Versus Biocomposite Interference Screw for Fixation in Allograft ACL Reconstruction: Prospective Evaluation of Osseous Integration and Patient Outcomes. JB JS Open Access. 2020; 5(2):e0057. https://doi.org/10.2106/JBJS.OA.19.00057 PMID: 33123662 51. Zehir S, Zehir R. Suspensory fixation versus novel transverse crosspin for femoral fixation in anterior cruciate ligament reconstruction. Arch Orthop Trauma Surg. 2014; 134(11):1579–85. https://doi.org/10. 1007/s00402-014-2062-0 PMID: 25047162 52. 62. Kraeutler MJ, Welton KL, McCarty EC, Bravman JT. Revision Anterior Cruciate Ligament Reconstruc- tion. J Bone Joint Surg Am. 2017; 99(19):1689–96. https://doi.org/10.2106/JBJS.17.00412 PMID: 28976434 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 References Colvin A, Sharma C, Parides M, Glashow J. What is the best femoral fixation of hamstring autografts in anterior cruciate ligament reconstruction?: a meta-analysis. Clin Orthop Relat Res. 2011; 469(4):1075– 81. https://doi.org/10.1007/s11999-010-1662-4 PMID: 21063817 19 / 20 PLOS ONE | https://doi.org/10.1371/journal.pone.0275097 September 22, 2022 PLOS ONE Femoral fixation methods for hamstring graft in anterior cruciate ligament reconstruction 53. Browning WM 3rd, Kluczynski MA, Curatolo C, Marzo JM. Suspensory Versus Aperture Fixation of a Quadrupled Hamstring Tendon Autograft in Anterior Cruciate Ligament Reconstruction: A Meta-analy- sis. Am J Sports Med. 2017; 45(10):2418–27. https://doi.org/10.1177/0363546516680995 PMID: 28068159 54. Ilahi OA, Nolla JM, Ho DM. Intra-tunnel fixation versus extra-tunnel fixation of hamstring anterior cruci- ate ligament reconstruction: a meta-analysis. J Knee Surg. 2009; 22(2):120–9. https://doi.org/10.1055/ s-0030-1247736 PMID: 19476176 55. Hurley ET, Gianakos AL, Anil U, Strauss EJ, Gonzalez-Lomas G. No difference in outcomes between femoral fixation methods with hamstring autograft in anterior cruciate ligament reconstruction—A net- work meta-analysis. Knee. 2019; 26(2):292–301. https://doi.org/10.1016/j.knee.2019.01.015 PMID: 30773253 56. Marx RG, Spock CR. Complications following hamstring anterior cruciate ligament reconstruction with femoral cross-pin fixation. Arthroscopy. 2005; 21(6):762. https://doi.org/10.1016/j.arthro.2005.04.006 PMID: 15944640 57. Qi W, Liu Y, Xue J, Li H, Wang J, Qu F. Applying Cross-Pin System in Both Femoral and Tibial Fixation in Anterior Cruciate Ligament Reconstruction Using Hamstring Tendons. Arthrosc Tech. 2015; 4(5): e397–402. https://doi.org/10.1016/j.eats.2015.03.018 PMID: 26697293 58. Speziali A, Delcogliano M, Tei M, Placella G, Bartoli M, Menghi A, et al. Fixation techniques for the ante- rior cruciate ligament reconstruction: early follow-up. A systematic review of level I and II therapeutic studies. Musculoskelet Surg. 2014; 98(3):179–87. https://doi.org/10.1007/s12306-014-0338-8 PMID: 25269758 59. Snaebjo¨rnsson T, Hamrin Senorski E, Svantesson E, Westin O, Persson A, Karlsson J, et al. Graft Fixa- tion and Timing of Surgery Are Predictors of Early Anterior Cruciate Ligament Revision: A Cohort Study from the Swedish and Norwegian Knee Ligament Registries Based on 18,425 Patients. JB JS Open Access. 2019; 4(4):e0037. https://doi.org/10.2106/JBJS.OA.19.00037 PMID: 32043061 60. Lee DH, Son DW, Seo YR, Lee IG. Comparison of femoral tunnel widening after anterior cruciate liga- ment reconstruction using cortical button fixation versus transfemoral cross-pin fixation: a systematic review and meta-analysis. Knee Surg Relat Res. 2020; 32(1):11. https://doi.org/10.1186/s43019-020- 0028-9 PMID: 32660647 61. Srinivas DK, Kanthila M, Saya RP, Vidyasagar J. Femoral and Tibial Tunnel Widening following Anterior Cruciate Ligament Reconstruction using Various Modalities of Fixation: A Prospective Observational Study. J Clin Diagn Res. 2016; 10(11):Rc09–rc11. https://doi.org/10.7860/JCDR/2016/22660.8907 PMID: 28050456 62. References Kraeutler MJ, Welton KL, McCarty EC, Bravman JT. Revision Anterior Cruciate Ligament Reconstruc- tion. J Bone Joint Surg Am. 2017; 99(19):1689–96. https://doi.org/10.2106/JBJS.17.00412 PMID: 28976434 20 / 20
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The comparison of clinical and biological characteristics between IDH1 and IDH2 mutations in gliomas
Journal of experimental & clinical cancer research
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* Correspondence: liuyanwei_tiantan@163.com; shizhong_zh@163.com †Equal contributors 2Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, No. 6 TiantanXili, Dongcheng District, Beijing 100050, China 1Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, 253# Gongye Road, Guangzhou, China Full list of author information is available at the end of the article The comparison of clinical and biological characteristics between IDH1 and IDH2 mutations in gliomas Hao-Yuan Wang1,3,5†, Kai Tang2,5†, Ting-Yu Liang4,5†, Wei-Zhong Zhang1,3, Ji-Ye Li4,6, Wen Wang2,5, Hui-Min Hu4,5, Ming-Yang Li4,5, Hui-Qing Wang1,3, Xiao-Zheng He1,3, Zhi-Yuan Zhu1,3, Yan-Wei Liu2,4,5* and Shi-Zhong Zhang1,3* Abstract Background: Mutations in isocitrate dehydrogenase 1 (IDH1) and isocitrate dehydrogenase 2 (IDH2) are frequent in low-grade gliomas and secondary glioblastomas (sGBM). Because they yield the same oncometabolite, D-2-hydroxyglutarate, they are often treated as equivalent and pooled. The objective of this study was to provide insight into the differences between IDH1 and IDH2 mutant gliomas. in low grade gliomas and secondary glioblastomas (sGBM). Because they yield the same oncometabolite, D-2-hydroxyglutarate, they are often treated as equivalent and pooled. The objective of this study was to provide insight into the differences between IDH1 and IDH2 mutant gliomas. Methods: To investigate the different clinical and molecular characterization between IDH1 mutant and IDH2 mutant gliomas, we studied 811 patients with IDH1 mutations, IDH2 mutations and IDH1/2 wild-type. In addition, whole-transcriptome sequencing and DNA methylation data were used to assess the distribution of genetic changes in IDH1 and IDH2 mutant gliomas in a Chinese population-based cohort. Results: Among 811 gliomas in our cohort, 448 cases (55.2 %) harbored an IDH1 mutation, 18 cases (2.2 %) harbored an IDH2 mutation and 345 cases (42.6 %) harbored an IDH1/2 wild-type. We found that IDH1 and IDH2 are mutually exclusive in gliomas, and IDH2 mutations are mutually exclusive with PTEN, P53 and ATRX mutations. Patients with IDH2 mutations had a higher frequency of 1p/19q co-deletion (p < 0.05) than IDH1 mutant patients. In addition, a Gene Set Enrichment Analysis (GSEA) showed that IDH2 mutant gliomas were associated with the oxidative phosphorylation gene set, and the four most representative biological processes for genes commonly altered by hypermethylation in IDH2 mutant gliomas were the regulation of cell proliferation, cell motion, cell migration and response to hypoxia. Patients with IDH2 mutant gliomas exhibited longer Overall survival (OS) (p < 0.05) and longer Progression-free survival (PFS) (p < 0.05) than patients with IDH1/2 wild-type gliomas. However, their OS and PFS did not differ from that of IDH1 mutant patients. Conclusions: Our study revealed an intrinsic distinction between IDH1 and IDH2 mutant gliomas, and these mutations should be considered separately because their differences could have implications for the diagnosis and treatment of IDH1/2 mutant gliomas. Keywords: Glioma, IDH mutation, Whole transcriptome sequencing, DNA methylation analyzes Keywords: Glioma, IDH mutation, Whole transcriptome sequencing, DNA methylation analyzes © 2016 The Author(s). Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 DOI 10.1186/s13046-016-0362-7 Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 DOI 10.1186/s13046-016-0362-7 Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 DOI 10.1186/s13046-016-0362-7 Open Access Open Access Background and a subset of sGBM [8]. In subsequent studies, IDH1 mutations were reported to occur in 70–80 % of WHO grade II or III astrocytomas, oligodendrogliomas, and oli- goastrocytomas, whereas a small group (3–5 %) were found to harbor IDH2 mutations [1]. This pattern con- trasts that observed in AML, which features similar rates of IDH1 (6.6 %) and IDH2 mutations (10.8 %) [9]. More- over, mutations of IDH1 and IDH2 are mutually exclusive in gliomas, and biochemical investigations showed that IDH1 and IDH2 mutations differ in D-2-hydroxyglutarate (D-2HG) production in gliomas [10]. This difference sug- gests that IDH1 and IDH2 mutations may impact different cellular pathways and exert different tumorigenic effects. To investigate the different clinical and molecular characterization between IDH1 mutant and IDH2 mutant gliomas, we studied a cohort of 811 patients consisting 448 IDH1 mutant, 18 IDH2 mutant and 345 IDH1/2 wild-type gliomas. We performed whole-transcriptome sequencing and DNA methylation analyses of the samples obtained from patients. We compared the mutational landscapes of IDH1 and IDH2 mutant gliomas, their clinical associations, overall survival, and progression-free survival. Our aim was to provide insight into the differences between IDH1 and IDH2 mutant gliomas. g Isocitrate dehydrogenase (IDH) enzymes encode the NADP+-dependent isocitrate dehydrogenase, which cata- lyzes the oxidative decarboxylation of isocitrate to form an α-ketoglutarate (α-KG). IDH1 and IDH2 proteins share a high degree of sequence similarity (70 % in humans) and are encoded by distinct genes (IDH1, 2q33 and IDH2, 15q26). Mutations in IDH1 and IDH2, which represent the most frequently mutated metabolic genes in human cancer, are implicated to be mutated in more than 50–80 % of low-grade gliomas and secondary glioblast- omas (sGBM), 10 % of intrahepatic cholangiocarcinoma, 20 % of acute myeloid leukemia (AML), 56 % of chondro- sarcomas, and over 10 % of melanoma cases [1–5]. Although IDH1 and IDH2 are highly similar and catalyze identical reactions, IDH1 is localized in the cytosol and IDH2 is found in the mitochondrial matrix. In addition, the spectrum of cancers and their subtypes are differ- ent. For example, IDH1 mutations are predominant in gliomas, chondrosarcoma, and cholangiocarcinoma, whereas IDH1 mutations and IDH2 mutations are equally common in AML. Despite their different physiological characteristics, most genomic studies of the molecular landscapes in human cancer have fre- quently combined IDH1 mutations and IDH2 muta- tions as a single functional group. Abstract Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Page 2 of 9 Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Methods Glioma, the most common primary brain tumor, is classified as grade I to IV based on histopathological and clinical criteria established by the 2007 World Health Organization (WHO) [6]. WHO grade I gliomas are often curable by surgical resection, whereas WHO grade II or III gliomas are invasive and have a poor prognosis. WHO grade IV tumors (glioblastomas), the most invasive tu- mors, feature a median survival of only 16 months, even after aggressive treatment consisting of surgery, radiation therapy, and chemotherapy [7]. In 2008, the genes encod- ing IDH1 were found to be mutated in low-grade gliomas Gene set enrichment analysis Clinicopathologic data, including gender, age, pathologic diagnosis and the results of molecular analysis were ob- tained. When the cases were classified as secondary GBMs based on biopsy-proven preexisting low-grade gliomas, 29 cases (12.4 %) were secondary GBM and the remainder were primary GBM (205 cases, 87.6 %). To identify the gene sets related to particular biological processes present in IDH-mutant patients, gene expres- sion profiling and a gene set enrichment analysis (GSEA) were performed as described previously [14]. IDH mutation Genomic DNA was isolated from frozen tissues with a QIAamp DNA Mini Kit (Qiagen) according to the manu- facturer’s protocol. The DNA concentration and quality were evaluated with a Nano-Drop ND-1000 spectropho- tometer (NanoDrop Technologies, Houston, TX). The py- rosequencing of IDH1/2 mutations was supported by Gene-tech (Shanghai, China) and performed on a Pyro- Mark Q96 ID System (Qiagen, Valencia, Calif). The primers 5′-GCTTGTGAGTGGATGGGTAAAAC-3′, 5′-Biotin-TT GCCAACATGACTTACTTGATC-3′, for IDH1 and 5′-AT CCTGGGGGGGACTGTCTT-3′, 5′-Biotin-CTCTCCAC CCTGGCCTACCT-3′ for IDH2 were used for PCR ampli- fication, and the primers 5′-TGGATGGGTAAAACCT-3′ for IDH1 and 5′-AGCCCATCACCATTG-3′ for IDH2 were used for pyrosequencing [13]. Statistical analysis Whole transcriptome sequencing of 161 gliomas and DNA methylation profile of 44 glioma samples, were obtained from Chinese Glioma Genome Atlas (CGGA) database (http://www.cgga.org.cn) [11–13]. All these samples were histologically graded according to 2007 WHO classification of tumours of the nervous systems [6]. Written informed consent was obtained from all do- nors. Clinical investigations were performed after ap- proval by the local research ethics committee and in accordance with the ethical principles. Survival distributions were estimated with a Kaplan-Meier survival analysis, and the log-rank test was used to assess the significance of differences between stratified survival groups using the GraphPad Prism 5.0 statistical software. The differences among patients in baseline clinical and molecular features according to IDH1 and IDH2 muta- tional status were tested using the Fisher’s exact and Wilcoxon rank sum tests for categoric and continuous variables, respectively. Gens that were differently meth- ylated between IDH2 mutant and IDH1 mutant tumors were obtained using the standard two-sampled t-test with unequal variance and sample size. To adjust for multiple comparisons, we applied the Benjamini-Hochberg method to control the False Discovery Rate at 5 %. We fur- ther filtered the list of significant genes by retaining those which exhibited at least 1.5-fold difference in gene ex- pression between IDH2 mutant and IDH1 mutant in our final comparisons. Student’s t-test was performed using SPSS 16.0. A two-sided p value < 0.05 was considered significant. Patients and tumor samples p Glioma samples were obtained from 811 patients with gliomas, including 448 IDH1 mutant, 18 IDH2 mutant and 345 IDH1/2 wild-type gliomas, which were composed of 577 low grade (II + III) gliomas, including 193 diffuse astrocytoma, 39 anaplastic astrocytomas, 49 low-grade oligodendrogliomas, 27 anaplastic oligodendrogliomas, 186 oligoastrocytomas, 83 anaplastic oligoastrocyotmas and 234 glioblastomas. These patients underwent surgery and were followed-up at Beijing Tiantan hosipital from 2004 to 2014. Table 1 The summary of the materials analysed in this study Pathological diagnosis WHO grade n = 811 IDH1 mutation No. (%) IDH2 mutation No. (%) IDH mutation total No. (%) Diffuse astrocytoma II 193 138 (71.5) 2 (1.0) 140 (72.5) Anaplastic astrocytoma III 39 14 (35.9) 0 (0) 14 (35.9) Oligodendroglioma II 49 38 (77.6) 3 (6.1) 41 (83.7) Anaplastic oligodendroglioma III 27 19 (70.4) 1 (3.7) 20 (74.1) Oligoastrocytoma II 186 147 (79.0) 9 (4.8) 156 (83.8) Anaplastic oligoastrocytoma III 83 47 (56.6) 1 (1.2) 48 (57.8) Subtotal (grades II and III) 577 403 (69.8) 16 (2.8) 419 (72.6) Primary GBM IV 205 29 (14.1) 1 (0.5) 30 (14.6) Secondary GBM IV 29 16 (55.2) 1 (3.4) 17 (58.6) Subtotal (Glioblastoma) IV 234 45 (19.2) 2 (0.9) 47 (20.1) Total 811 448 (55.2) 18 (2.2) 466 (57.4) Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 3 of 9 Fig. 1 Overview of clinical and molecular characterization of the cohort (n = 811). Each column represents a patient Results Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 5 of 9 Page 5 of 9 Table 3 Molecular characteristics according to IDH mutation in glioma Molecular Characteristic IDH1-Mutated IDH2-Mutated IDH1/IDH2-WT P (IDH1-Mutated VS IDH1/IDH2-WT) P (IDH2-Mutated VS IDH1/IDH2-WT) P (IDH1-Mutated VS IDH2-Mutated) PTEN Mutation 6 0 43 <0.001 0.098 0.605 Wild-type 314 14 218 NA 128 4 84 1p/19q Co-deletion Absent 341 9 307 <0.001 <0.001 <0.05 Present 106 9 34 NA 1 0 1 P53 Mutation 215 0 232 <0.001 0.154 <0.05 Wild-type 115 14 34 NA 118 4 79 ATRX Mutation 13 0 15 0.084 0.638 0.728 Wild-type 107 5 102 NA 328 13 228 IDH2 mutant gliomas exhibit DNA methylation profiles distinct from those of IDH1 mutant gliomas Given the DNA methylation profiles of 3 IDH2 mutant gliomas and 41 IDH1 mutant gliomas, we used stand- ard t-tests to identify differentially methylated regions. The methylation patterns of genes that correlated with IDH2 mutant gliomas are shown in Fig. 3a using a one- dimensional hierarchical clustering analysis. The four most representative biological processes for genes com- monly altered by hypermethylation were the regulation of cell proliferation, cell motion, cell migration and response to hypoxia (Fig. 3b). According to the hypomethylated genes, the three most representative biological processes were ion transport, cell-cell signaling, and cation transport (Fig. 3b). IDH1 mutations are found in 14.1 % (29/205) of pGBM, 55.2 % (16/29) of sGBM and 69.8 % (403/577) of low grade gliomas. Combined IDH1 and IDH2 mutations were found in 14.6 % (30/205) of pGBM, 58.6 % (17/29) of sGBM and 72.6 % (419/577) of low grade gliomas. IDH2 mutant gliomas exhibit DNA methylation profiles distinct from those of IDH1 mutant gliomas As shown in Fig. 1 and Table 2, patients with muta- tions in IDH2 did not differ from IDH1-mutant patients in terms of age, gender, WHO grade, KPS, histologic type and laterality (Table 2). To characterize the mo- lecular features of IDH2 mutant gliomas, we analyzed associations between IDH2 mutations and other muta- tional events. Patients with IDH2 mutations had a higher frequency of 1p/19q co-deletion (p < 0.05) and a lower frequency of P53 mutation (p < 0.05) than IDH1 mutant patients (Table 3). Strikingly, the presence of IDH2 mutations and PTEN mutations, P53 mutation and ATRX mutation did not correlate (Fig. 1 and Table 3). Results Associations of IDH2 mutations with clinical outcome In our cohort, the presence of an IDH2 mutation was associated with a longer overall survival (p < 0.05) and longer progression-free survival (p < 0.05) (Fig. 4a/b) than the presence of the IDH1/2 wild-type gene. However, when considering all patients with IDH2 mutations, the overall survival and time to recurrence did not differ from those of IDH1 mutant patients (Fig. 4a/b). This result illustrates that the effects of IDH2 mutation and IDH1 mutation on clinical prog- nosis were similar. Gene set enrichment analysis for IDH2 mutant patients To gain biologic insight into the potentially significance of IDH2 mutations, we compared the whole-transcriptome se- quencing expression profiles of 5 IDH2 mutant patients with 109 IDH1 mutant patients and 47 IDH1/2 wild-type patients. First, we used a Gene Set Enrichment Analysis (GSEA) to compare the global gene expression profiles of the IDH2 mutant and IDH1 mutant gliomas. The result showed that the oxidative phosphorylation gene set was up- regulated (FDR q-value = 0; Fig. 2a/c). We then compared the whole-transcriptome sequencing expression profiles of the IDH2 mutant and IDH1/2 wild-type gliomas (Fig. 2b). The results showed that the oxidative phosphorylation gene set (FDR q-value < 0.001; Fig. 2d) and hedgehog signaling set were upregulated (FDR q-value < 0.05; Fig. 2e). Results Clinical and molecular characterization of IDH2 mutations Among a total of 811 gliomas, IDH2 mutations were identified in 18 cases (2.2 %) (Table 1). IDH2 mutations were found in 0.5 % of pGBM (1/215), 3.4 % of sGBM (1/29) and 2.8 % (16/577) of low grade gliomas, while Table 2 Clinical characteristics according to IDH mutational status in gliomas Clinical characteristic N = 811 IDH1-Mutated IDH2-Mutated IDH1/IDH2-Wild-type P (IDH1-Mutated VS IDH1/IDH2- Wild-type) P (IDH2-Mutated VS IDH1/ IDH2- Wild-type) P (IDH1-Mutated VS IDH2-Mutated) No. (%) No. (%) No. (%) Age, years <45 423 285 (67.4) 13 (3.1) 125 (29.5) <0.001 <0.05 0.456 ≥45 388 163 (42.0) 5 (1.3) 220 (56.7) Median age, years 39.1 37.3 45.0 <0.001 <0.05 0.456 Range 17.0–66.0 26.0–56.0 9.0–81.0 Gender Male 495 265 (53.5) 11 (2.2) 219 (44.2) 0.113 0.801 0.824 Female 316 186 (58.9) 7 (2.2) 123 (38.9) WHO Grade II + III 577 403 (69.8) 16 (2.8) 158 (27.4) <0.001 <0.001 0.883 IV 234 45 (19.2) 2 (0.9) 187 (79.9) KPS score <80 74 26 (35.1) 2 (2.7) 46 (62.2) <0.001 0.376 0.514 ≥80 253 173 (68.4) 7 (2.8) 73 (28.8) NA 483 248 9 226 Histologic type Oligodendroglioma 76 57 (75.0) 4 (5.3) 15 (19.7) <0.001 <0.001 0.218 Oligoastrocytoma 269 194 (72.1) 10 (3.7) 65 (24.2) Astrocytoma 437 181 (41.4) 3 (0.7) 253 (57.9) sGBM 29 16 (55.2) 1 (3.4) 12 (41.4) Laterality Left 380 211 (55.5) 9 (2.4) 160 (42.1) <0.05 0.891 0.985 Right 366 203 (55.5) 8 (2.2) 155 (42.3) Midline 53 33 (62.3) 1 (1.9) 19 (35.8) NA 12 1 0 11 Table 2 Clinical characteristics according to IDH mutational status in gliomas Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 5 of 9 Wang et al. Discussion Mutations in the IDH1 and IDH2 genes have been found in patients with gliomas and were initially identi- fied in low-grade gliomas and secondary glioblastomas [1]. Strikingly, mutations in IDH1 and IDH2 are mutually exclusive in gliomas. Although the genetic and epigenetic landscapes of IDH1 mutation gliomas have been extensively Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 6 of 9 Fig. 2 Gene Set Enrichment Analysis (GSEA) of overexpressed genes in glioma harboring IDH2 mutations. Each row represents a gene, and each column indicates a glioma with an IDH2 mutation, IDH1 mutation or IDH1/2 wild-type. Red indicates upregulated genes, and blue indicates downregulated genes. a Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1 mutant gliomas. b Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1/2 wild-type gliomas. c one representative plot of GSEA from a. d-e two representative plots of GSEA from (b) Fig. 2 Gene Set Enrichment Analysis (GSEA) of overexpressed genes in glioma harboring IDH2 mutations. Each row represents a gene, and each column indicates a glioma with an IDH2 mutation, IDH1 mutation or IDH1/2 wild-type. Red indicates upregulated genes, and blue indicates downregulated genes. a Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1 mutant gliomas. b Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1/2 wild-type gliomas. c one representative plot of GSEA from a. d-e two representative plots of GSEA from (b) Fig. 2 Gene Set Enrichment Analysis (GSEA) of overexpressed genes in glioma harboring IDH2 mutations. Each row represents a gene, and each column indicates a glioma with an IDH2 mutation, IDH1 mutation or IDH1/2 wild-type. Red indicates upregulated genes, and blue indicates downregulated genes. a Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1 mutant gliomas. b Expression levels of genes annotated in IDH2 mutant gliomas compared to IDH1/2 wild-type gliomas. c one representative plot of GSEA from a. d-e two representative plots of GSEA from (b) IDH2 mutation did not correlate with the presence of PTEN, P53, and ATRX mutations, but a highly significant positive correlation was observed with the presence of a 1p/19q co-deletion: 44.4 % of IDH2 mutation patients har- bored a 1p/19q co-deletion. Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Discussion In malignant glioma, IDH1 mutations are ubiquitous in tumor cells, and IDH1 muta- tions precede secondary and tertiary lesions, suggesting that IDH1 mutations are an early causative event in the studied, whether IDH2 mutation gliomas have unique genetic and epigenetic characteristics that can be used as targets for future intervention is unknown. In this report, we compared the clinical and molecular characteristics of glioma patients harboring IDH1 and IDH2 mutations. g g Like mutations in IDH1, mutations in IDH2 affect a conserved arginine residue (R172) in the substrate-binding site of the IDH2 enzyme. In our cohort, the presence of an Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 7 of 9 Fig. 3 Clustering analysis of DNA methylation in IDH2 mutant gliomas. a The pattern of DNA methylation was associated with IDH2 mutant gliomas using a one-dimensional hierarchical clustering analysis. b Functional enrichment analysis of associated genes, indicating the functional roles of gene sets in different subgroups. Enrichment results for biological processes were obtained from the GO database. The orders of biological processes listed in the histogram are based on the number of targets annotated in the biological process (BP) Fig 3 Clustering analysis of DNA methylation in IDH2 mutant gliomas a Fig. 3 Clustering analysis of DNA methylation in IDH2 mutant gliomas. a The pattern of DNA methylation was associated with IDH2 mutant gliomas using a one-dimensional hierarchical clustering analysis. b Functional enrichment analysis of associated genes, indicating the functional roles of gene sets in different subgroups. Enrichment results for biological processes were obtained from the GO database. The orders of biological processes listed in the histogram are based on the number of targets annotated in the biological process (BP) Fig. 4 The Kaplan–Meier estimates for Overall survival (OS) (a) and Progression-free survival (PFS) (b) indicates that IDH2 mutant gliomas associated with longer overall survival (p = 0.011) and longer progression-free survival (p = 0.011) than IDH1/2 wild-type gliomas. However, the OS and PFS did not significantly differ between IDH1 mutant and IDH2 mutant gliomas Fig. 3 Clustering analysis of DNA methylation in IDH2 mutant gliomas. a The pattern of DNA methylation was associated with IDH2 mutant gliomas using a one-dimensional hierarchical clustering analysis. b Functional enrichment analysis of associated genes, indicating the functional roles of gene sets in different subgroups. Enrichment results for biological processes were obtained from the GO database. Abbreviations CGGA Ch G 11. Bao ZS, Chen HM, Yang MY, Zhang CB, Yu K, Ye WL, et al. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas. Genome Res. 2014;24(11):1765–73. References l 1. De Carli E, Wang X, Puget S. IDH1 and IDH2 mutations in gliomas. N Engl J Med. 2009;360:2248. author reply 2249. 2. Wang P, Dong Q, Zhang C, Kuan PF, Liu Y, Jeck WR, et al. Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas. Oncogene. 2013;32:3091–100. 2. Wang P, Dong Q, Zhang C, Kuan PF, Liu Y, Jeck WR, et al. Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas. Oncogene. 2013;32:3091–100. 3. Marcucci G, Maharry K, Wu YZ, Radmacher MD, Mrozek K, Margeson D, et al. IDH1 and IDH2 gene mutations identify novel molecular subsets within de novo cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study. J Clin Oncol. 2010;28:2348–55. 4. Amary MF, Bacsi K, Maggiani F, Damato S, Halai D, Berisha F, et al. IDH1 and IDH2 mutations are frequent events in central chondrosarcoma and central and periosteal chondromas but not in other mesenchymal tumours. J Pathol. 2011;224:334–43. 4. Amary MF, Bacsi K, Maggiani F, Damato S, Halai D, Berisha F, et al. IDH1 and IDH2 mutations are frequent events in central chondrosarcoma and central and periosteal chondromas but not in other mesenchymal tumours. J Pathol. 2011;224:334–43. 5. Shibata T, Kokubu A, Miyamoto M, Sasajima Y, Yamazaki N. Mutant IDH1 confers an in vivo growth in a melanoma cell line with BRAF mutation. Am J Pathol. 2011;178:1395–402. 6. Louis DN, Ohgaki H, Wiestler OD, Cavenee WK, Burger PC, Jouvet A, et al. The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol. 2007;114:97–109. 6. Louis DN, Ohgaki H, Wiestler OD, Cavenee WK, Burger PC, Jouvet A, et al. The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol. 2007;114:97–109. Authors’ contributions HYW, KT, TYL conceived of the study and draft the manuscript. WZZ, JYL, WW, HMH helped to collect the clinical data of patients. MYL, HQW, XZH, ZYZ helped to performed the statistical analysis. SZZ and YWL participated in its design. All authors read and approved the final manuscript. Conclusion 7. Weller M, Cloughesy T, Perry JR, Wick W. Standards of care for treatment of recurrent glioblastoma–are we there yet. Neuro Oncol. 2013;15:4–27. In conclusion, our results describe the clinical and bio- logical characteristics of IDH1 and IDH2 mutations in gli- omas. Understanding the underlying biology of the differences in outcome observed for IDH1 and IDH2 mu- tant gliomas will be important for future studies and may lead to the development of novel approaches to therapy. 8. Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, et al. An integrated genomic analysis of human glioblastoma multiforme. Science. 2008;321:1807–12. 9. Shen Y, Zhu YM, Fan X, Shi JY, Wang QR, Yan XJ, et al. Gene mutation patterns and their prognostic impact in a cohort of 1185 patients with acute myeloid leukemia. Blood. 2011;118:5593–603. 10. Ward PS, Lu C, Cross JR, Abdel-Wahab O, Levine RL, Schwartz GK, et al. The potential for isocitrate dehydrogenase mutations to produce 2- hydroxyglutarate depends on allele specificity and subcellular compartmentalization. J Biol Chem. 2013;288:3804–15. Discussion The orders of biological processes listed in the histogram are based on the number of targets annotated in the biological process (BP) Fig. 4 The Kaplan–Meier estimates for Overall survival (OS) (a) and Progression-free survival (PFS) (b) indicates that IDH2 mutant gliomas associated with longer overall survival (p = 0.011) and longer progression-free survival (p = 0.011) than IDH1/2 wild-type gliomas. However, the OS and PFS did not significantly differ between IDH1 mutant and IDH2 mutant gliomas Fig. 4 The Kaplan–Meier estimates for Overall survival (OS) (a) and Progression-free survival (PFS) (b) indicates that IDH2 mutant gliomas associated with longer overall survival (p = 0.011) and longer progression-free survival (p = 0.011) than IDH1/2 wild-type gliomas. However, the OS and PFS did not significantly differ between IDH1 mutant and IDH2 mutant gliomas Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Page 8 of 9 Page 8 of 9 Page 8 of 9 genesis of gliomas [15–17]. A pathology study of multiple biopsies from the same patient found that IDH1 muta- tions occurred before the acquisition of P53 mutations and 1p/19q loss of heterozygosity (LOH) [16], suggesting that IDH1 mutations may result in cellular stress that leads to the mutation of P53 and 1p/19q loss. However, IDH2 mutations and PTEN, P53 and ATRX mutations were mutually exclusive, suggesting that the microenvir- onment of IDH2 mutations may not create cellular stress that leads to the other mutations, which needs further re- search to fully elucidate. Abbreviations CGGA: Chinese Glioma Genome Atlas; GSEA: gene set enrichment analysis; IDH1: isocitrate dehydrogenase 1; IDH2: isocitrate dehydrogenase 2; OS: overall survival; PFS: progression-free survival; sGBM: secondary glioblastomas. 8. Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, et al. An integrated genomic analysis of human glioblastoma multiforme. Science. 2008;321:1807–12. Author details 1 1Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, 253# Gongye Road, Guangzhou, China. 2Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, No. 6 TiantanXili, Dongcheng District, Beijing 100050, China. 3The National Key Clinical Specialty. The Engineering Technology Research Center of Education Ministry of China Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China. 4Beijing Neurosurgical Institute, Capital Medical University, Beijing, China. 5Chinese Glioma Cooperative Group (CGCG), Beijing, China. 6Center for Brain Disorders Research, Capital Medical University, Beijing 100069, China. y Tumor cells often take up nutrients in excess of their bioenergetic needs and shunt metabolites into pathways that support tumor progression [18–20]. During cell pro- liferation, tumor cells depend on aerobic glycolysis to meet their bioenergy needs and generate intermediates for macromolecule biosynthesis. One study demonstrated that glioma cells harboring mutant IDH1 may maintain cell proliferation via the glutamate metabolism pathway [21]. In our study, GSEA was performed for IDH2 and IDH1 mutations, yielding enriched gene sets related to oxidative phosphorylation, which is critical to tricarboxylic acid (TCA) cycle, in the IDH2 mutation subset. This find- ing corroborates that of a previous study [22, 23]. IDH2 is localized in the mitochondria and participates in the TCA to produce energy, whereas IDH1 is localized in the cyto- plasm and peroxisomes [24]. Consequently, does energy production in IDH2-mutated gliomas favor oxidative phosphorylation over aerobic glycolysis? These interesting findings should be verified in more cases before accepting them as general characteristics of IDH2-mutated gliomas. Future work should focus on the potential of therapeutic- ally targeting compensatory metabolic pathways in IDH2- mutant gliomas. Received: 24 February 2016 Accepted: 17 May 2016 Received: 24 February 2016 Accepted: 17 May 2016 Competing interests The authors declare that they have no competing interests. 7. Weller M, Cloughesy T, Perry JR, Wick W. Standards of care for treatment of recurrent glioblastoma–are we there yet. Neuro Oncol. 2013;15:4–27. 13. Cai J, Chen J, Zhang W, Yang P, Zhang C, Li M, et al. Loss of ATRX, associated with DNA methylation pattern of chromosome end, impacted biological behaviors of astrocytic tumors. Oncotarget. 2015;6:18105–15. 6. Louis DN, Ohgaki H, Wiestler OD, Cavenee WK, Burger PC, Jouvet A, et al. The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol. 2007;114:97–109. Acknowledgments 12. Zhang W, Yan W, You G, Bao Z, Wang Y, Liu Y, et al. Genome-wide DNA methylation profiling identifies ALDH1A3 promoter methylation as a prognostic predictor in G-CIMP- primary glioblastoma. Cancer Lett. 2013; 328:120–5. This study was funded by the following grants: 1. Guangdong Provincial Clinical Medical Centre for Neurosurgery (No. 2013B020400005). 2. Beijing science and technology plan (No. Z131100006113018). 3. National Natural Science Foundation of China (No. 81371397, 91229121, 81272804, 81071011). 4. National High Technology Research and Development Program (No. 2012AA02A508), International Science and Technology Cooperation Program (No.2012DFA30470). 5. National High Technology Research and Development Program (No. 2012AA02A508). This study was funded by the following grants: 1. Guangdong Provincial Clinical Medical Centre for Neurosurgery (No. 2013B020400005). 2. Beijing science and technology plan (No. Z131100006113018). 3. National Natural Science Foundation of China (No. 81371397, 91229121, 81272804, 81071011). 4. National High Technology Research and Development Program (No. 2012AA02A508), International Science and Technology Cooperation Program (No.2012DFA30470). 5. National High Technology Research and Development Program (No. 2012AA02A508). 13. Cai J, Chen J, Zhang W, Yang P, Zhang C, Li M, et al. Loss of ATRX, associated with DNA methylation pattern of chromosome end, impacted biological behaviors of astrocytic tumors. Oncotarget. 2015;6:18105–15. 14. Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for 14. Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for Page 9 of 9 Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102:15545–50. interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102:15545–50. 15. Lai A, Kharbanda S, Pope WB, Tran A, Solis OE, Peale F, et al. Evidence for sequenced molecular evolution of IDH1 mutant glioblastoma from a distinct cell of origin. J Clin Oncol. 2011;29:4482–90. distinct cell of origin. J Clin Oncol. 2011;29:4482–90. 16. Watanabe T, Nobusawa S, Kleihues P, Ohgaki H. IDH1 mutations are early events in the development of astrocytomas and oligodendrogliomas. Am J Pathol. 2009;174:1149–53. 17. Wakimoto H, Tanaka S, Curry WT, Loebel F, Zhao D, Tateishi K, et al. Targetable signaling pathway mutations are associated with malignant phenotype in IDH-mutant gliomas. Clin Cancer Res. 2014;20:2898–909. 18. Benjamin DI, Cravatt BF, Nomura DK. Global profiling strategies for mapping dysregulated metabolic pathways in cancer. Wang et al. Journal of Experimental & Clinical Cancer Research (2016) 35:86 Acknowledgments Cell Metab. 2012;16:565–77. 19. Qin LS, Jia PF, Zhang ZQ, Zhang SM. ROS-p53-cyclophilin-D signaling mediates salinomycin-induced glioma cell necrosis. J Exp Clin Cancer Res. 2015;34:57. 20. Cheng Z, Wang HZ, Li X, Wu Z, Han Y, Li Y, et al. MicroRNA-184 inhibits cell proliferation and invasion, and specifically targets TNFAIP2 in Glioma. J Exp Clin Cancer Res. 2015;34:27. 21. Seltzer MJ, Bennett BD, Joshi AD, Gao P, Thomas AG, Ferraris DV, et al. Inhibition of glutaminase preferentially slows growth of glioma cells with mutant IDH1. Cancer Res. 2010;70:8981–7. 22. Waitkus MS, Diplas BH, Yan H. Isocitrate dehydrogenase mutations in gliomas. Neuro Oncol. 2016;18(1):16–26. 23. Reitman ZJ, Jin G, Karoly ED, Spasojevic I, Yang J, Kinzler KW, et al. Profiling the effects of isocitrate dehydrogenase 1 and 2 mutations on the cellular metabolome. Proc Natl Acad Sci U S A. 2011;108:3270–5. 24. Xu X, Zhao J, Xu Z, Peng B, Huang Q, Arnold E, et al. Structures of human cytosolic NADP-dependent isocitrate dehydrogenase reveal a novel self- regulatory mechanism of activity. 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Febuxostat, a novel xanthine oxidoreductase inhibitor, improves hypertension and endothelial dysfunction in spontaneously hypertensive rats
Naunyn-Schmiedeberg's archives of pharmacology
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* Takashi Shirakura t.shirakura@teijin.co.jp Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 DOI 10.1007/s00210-016-1239-1 Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 DOI 10.1007/s00210-016-1239-1 ORIGINAL ARTICLE 2 Division of Endocrinology, Diabetes and Metabolism, Hematology, Rheumatology (Second Department of Internal Medicine), Graduate School of Medicine, University of the Ryukyus, Nishihara, Okinawa, Japan 1 Pharmaceutical Development Research Laboratories, Teijin Institute for Bio-Medical Research, Teijin Pharma Ltd., 4-3-2, Asahigaoka, Hino 191-852, Tokyo, Japan Abbreviations Abbreviations ACh Acetylcholine NAD Nicotinamide adenine dinucleotide NO Nitric oxide ROS Reactive oxygen species SBP Systolic blood pressure SHR Spontaneously hypertensive rat SNP Sodium nitroprusside WKY Wistar-Kyoto XDH Xanthine dehydrogenase XO Xanthine oxidase XOR Xanthine oxidoreductase Abbreviations ACh Acetylcholine NAD Nicotinamide adenine dinucleotide NO Nitric oxide ROS Reactive oxygen species SBP Systolic blood pressure SHR Spontaneously hypertensive rat SNP Sodium nitroprusside WKY Wistar-Kyoto XDH Xanthine dehydrogenase XO Xanthine oxidase XOR Xanthine oxidoreductase Abbreviations ACh Acetylcholine NAD Nicotinamide adenine dinucleotide NO Nitric oxide ROS Reactive oxygen species SBP Systolic blood pressure SHR Spontaneously hypertensive rat SNP Sodium nitroprusside WKY Wistar-Kyoto XDH Xanthine dehydrogenase XO Xanthine oxidase XOR Xanthine oxidoreductase Febuxostat, a novel xanthine oxidoreductase inhibitor, improves hypertension and endothelial dysfunction in spontaneously hypertensive rats Takashi Shirakura1 & Johji Nomura1 & Chieko Matsui1 & Tsunefumi Kobayashi1 & Mizuho Tamura1 & Hiroaki Masuzaki2 Received: 11 February 2016 /Accepted: 28 March 2016 /Published online: 20 May 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Xanthine oxidase (XO) is an enzyme responsible for the production of uric acid. XO produces considerable amount of oxidative stress throughout the body. To date, however, its pathophysiologic role in hypertension and endo- thelial dysfunction still remains controversial. To explore the possible involvement of XO-derived oxidative stress in the pathophysiology of vascular dysfunction, by use of a selective XO inhibitor, febuxostat, we investigated the impact of phar- macological inhibition of XO on hypertension and vascular endothelial dysfunction in spontaneously hypertensive rats (SHRs). Sixteen-week-old SHR and normotensive Wistar- Kyoto (WKY) rats were treated with tap water (control) or water containing febuxostat (3 mg/kg/day) for 6 weeks. Systolic blood pressure (SBP) in febuxostat-treated SHR (220±3 mmHg) was significantly (P<0.05) decreased com- pared with the control SHR (236±4 mmHg) while SBP in febuxostat-treated WKY was constant. Acetylcholine- induced endothelium-dependent relaxation in aortas from febuxostat-treated SHR was significantly (P<0.05) improved compared with the control SHR, whereas relaxation in re- sponse to sodium nitroprusside was not changed. Vascular XO activity and tissue nitrotyrosine level, a representative indica- tor of local oxidative stress, were considerably elevated in the control SHR compared with the control WKY, and this incre- ment was abolished by febuxostat. Our results suggest that exaggerated XO activity and resultant increase in oxidative stress in this experimental model contribute to the hyperten- sion and endothelial dysfunction, thereby supporting a notion that pharmacological inhibition of XO is valuable not only for hyperuricemia but also for treating hypertension and related endothelial dysfunction in human clinics. control SHR compared with the control WKY, and this incre- ment was abolished by febuxostat. Our results suggest that exaggerated XO activity and resultant increase in oxidative stress in this experimental model contribute to the hyperten- sion and endothelial dysfunction, thereby supporting a notion that pharmacological inhibition of XO is valuable not only for hyperuricemia but also for treating hypertension and related endothelial dysfunction in human clinics. Keywords Xanthine oxidase . Febuxostat . Endothelial dysfunction . Hypertension Keywords Xanthine oxidase . Febuxostat . Endothelial dysfunction . Hypertension Animals and treatments Because of its ability to generate reactive oxygen species (ROS), the role of XOR has long been investigated in a wide variety of ROS-related diseases (Boueiz et al. 2008). Male SHRs and age-matched Wistar-Kyoto (WKY) rats weighing 200–300 g were purchased from Charles River Japan (Yokohama, Japan) and were maintained under stan- dard conditions until the experiments were done. All studies were performed in accordance with procedures approved by the Animal Ethics Committee of the Teijin Institute for Bio- Medical Research Institute, Teijin Pharma Limited, Tokyo, Japan. Hypertension is a major risk for cardiovascular diseases. A large body of evidence suggests that locally exaggerated ox- idative stress is profoundly involved in the pathophysiology of hypertension (Nickenig and Harrison 2002; Ceriello 2008; Cutler et al. 2008; Grossman 2008). In accordance with this notion, augmented oxidative stress has been implicated in vascular dysfunction of several models of experimental hyper- tension ((Fukui et al. 1997; Kerr et al. 1999; Tanito et al. 2004; Touyz 2004). In particular, endothelial dysfunction is a hall- mark of hypertension (Lockette et al. 1986; Morawietz et al. 2001; Landmesser et al. 2003), which is also evoked by ox- idative stress. As one of underlying mechanisms, it is sug- gested that oxidative stress reduces bioavailability and bioac- tivity of nitric oxide (NO), a potent endothelium-derived relaxing factor (Li et al. 2013). Four groups of rats were used in this study: (1) WKY control rats (WKY-C), (2) febuxostat-treated WKY rats (WKY-Fx), (3) control SHR (SHR-C), and (4) febuxostat- treated SHR (SHR-Fx). WKY-C and SHR-C groups were given tap water. The WKY-Fx and SHR-Fx groups were given febuxostat dissolved in drinking water ad libitum at a concen- tration of 0.03 mg/L. At this concentration, the dose of febuxostat per day calculated by the daily water intake and body weight was approximately 3 mg/kg/day. As a matter of fact, we recently found that single oral administration of febuxostat at 1, 3, and 10 mg/kg to rats showed dose- dependent inhibition of XO activity in plasma and aorta (data not shown). It should be noted that repeated administration of XO inhibitor at high dose in rodents results in death, partly because xanthine calculi caused renal impairment due to inhi- bition of XOD/XDH (Isa et al. 1968). According to this no- tion, oral administration of febuxostat at 10 mg/kg for 28 days caused calculi in 1 of 30 animals (Horiuchi et al. 1999). Blood pressure measurement SBP was measured using a tail-cuff sphygmomanometer (Visitech BP2000, Visitech Systems, Apex, NC). All animals were acclimated for blood pressure measurements 1 week before drug treatment. Materials and methods tissue ischemia and tissue damage (Harrison 2002), it can be converted into an oxidase (xanthine oxidase (XO)) using mo- lecular oxygen as the electron acceptor. Introduction Xanthine oxidoreductase (XOR) catalyzes the oxidation of hypoxanthine to xanthine and on to uric acid, which are the final reactions of purine catabolism in humans. Under phys- iological conditions, the enzyme functions mainly as a dehy- drogenase (XDH) and uses NAD+ as the electron acceptor. Noticeably, under a variety of pathologic conditions such as 832 Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 Animals and treatments In this context, to achieve the maximal inhibition of XO and avoid possible renal damages, we carefully selected 3 mg/kg/day as a dose of febuxostat. The febuxostat treatment was started at 16 weeks of age and carried out for 6 weeks. Systolic blood pressures (SBPs) were measured before and 2, 4, and 6 weeks during the drug treatment. Vascular function, XO activity, and other biochemical parameters were determined at 6 weeks. Based on the notion that XO produces ROS, it is reasonable to speculate that XO would ameliorate hypertension and as- sociated endothelial dysfunction. However, conflicting re- sults have been reported depending on the experimental hy- pertensive models (Tian et al. 2005; Zhang et al. 2005; Yamamoto et al. 2006; Ong et al. 2007; Viel et al. 2008). It also should be noted that most of previous studies used al- lopurinol to attain the pharmacological XO inhibition. Importantly, allopurinol is a classic suicide inhibitor, as its binding to and reduction of the Mo cofactor induce self- oxidation to form oxypurinol, an active inhibitory metabolite. Reduction of the Mo cofactor by allopurinol leads to ROS production (Galbusera et al. 2006). On the other hand, allopu- rinol is known to exert radical scavenging effect due to its chemical structure (Augustin et al. 1994). For these reasons, it seems to be hard to precisely evaluate the pharmacological effect of XO inhibition by allopurinol. In contrast, febuxostat is a novel, selective, and potent XO inhibitor with non-purine structure for treating gout in human clinics. Unlike allopuri- nol, febuxostat does not produce or scavenge ROS by its chemical structure, because it is neither a suicide XO inhibitor nor a radical scavenger (Okamoto et al. 2003). In this sense, febuxostat would be better tool to resolve the issue whether pharmacological XO inhibition reduces blood pressure and improves the endothelial dysfunction in experimental models. To explore the possible involvement of XO-derived ox- idative stress in the pathophysiology of vascular dys- function, we evaluated the impact of febuxostat on hyper- tension and vascular endothelial dysfunction in spontane- ously hypertensive rats (SHRs), representative animal model of human essential or primary hypertension (Zicha and Kunes 1999). Oxidative stress measurement Tissues were weighed and homogenized with 0.05 M potas- sium phosphate buffer, pH 7.4, containing 1 mM EDTA and protease inhibitors. Homogenates were centrifuged at 12, 000 rpm for 15 min at 4 °C, and the supernatants were col- lected and used for assay. The measurement of nitrotyrosine was performed by using a commercially available nitrotyrosine assay kit (Northwest Life Science, CA, USA) according to the manufacturer’s instructions. Systolic blood pressure SBP in the SHR-C group was significantly higher compared to that in the WKY-C group. Febuxostat treatment significant- ly (P<0.05) decreased SBP in the SHRs (236±4 mmHg in SHR-C, 220±3 mmHg in SHR-Fx, Fig. 1), while it did not alter SBP in the WKY rats after 6-week treatment (164 ±7 mmHg in WKY-C, 156±9 mmHg in WKY-Fx, Fig. 1). Following equilibration, the rings were repeatedly exposed to 60 mM KCl, and then, the presence of endothelium was verified by the ability of acetylcholine (ACh, 1×10−6 M) to relax phenylephrine (PE, 1 ×10−7 M)-induced contraction. After washout, endothelium-mediated relaxation was mea- sured as a concentration-response curve to ACh (1×10−10– 1×10−4 M) in rings contracted with the submaximal dose of PE (5×10−7 M). Endothelium-independent relaxation was also measured as a concentration-response curve to sodium nitroprusside (SNP) (1×10−10–1×10−4 M). General conditions of animals The animals were sacrificed at the end of the 6-week study by decapitation under pentobarbital anesthesia. The thoracic aor- ta was isolated carefully and cut into 3-mm-length ring. The ring segments were mounted in organ baths containing 5 mL of Krebs-Henseleit solution aerated with 95 % O2 and 5 % CO2 and warmed at 37 °C. The composition of Krebs- Henseleit solution is as follows (mM): NaCl (119), KCl (4.7), CaCl2 (2.5), MgSO4 (1.2), NaHCO3 (25), KH2PO4 (1.2), and glucose (10); pH7.4. Each ring was connected to a force transducer (FD, NIHON KODEN, Tokyo, Japan) for isometric force recording. The rings were stretched to 2 g of optimal tension and equilibrated for 60 min until a stable baseline tone was obtained. Febuxostat treatment did not alter the body weight in both WKY rats and SHRs. The plasma uric acid levels were similar in WKY-C and SHR-C groups (Table 1). Febuxostat treatment significantly decreased plasma uric acid levels in both WKY rats and SHRs to the same extent (0.9±0.1 mg/dL in WKY-C, 0.5±0.1 mg/dL in WKY-Fx, 1.0±0.1 mg/dL in SHR-C, and 0.5±0.1 mg/dL in SHR-Fx; Table 1). Plasma uric acid level Plasma uric acid levels were determined by an enzymatic method based on the uricase-peroxidase system (PUREAUTO® S CRE-N, Sekisui Medical Co. Ltd., Japan). Vascular oxidative stress To investigate the therapeutic effect of febuxostat on oxidative stress, we examined the tissue nitrotyrosine level. Nitrotyrosine, a marker of nitro-oxidative stress in the thoracic aorta of SHRs, was significantly higher than that of WKY rats (Fig. 3). The treatment with febuxostat lowered nitrotyrosine concentration in both strains (Fig. 3). Xanthine oxidase activity Plasma and tissue XO activities were measured by the pterin- based assay. In brief, frozen tissues were homogenized with potassium phosphate buffer, pH 7.4, containing 1 mM ethyl- enediaminetetraacetic acid (EDTA) and protease inhibitors. The homogenates were centrifuged 12,000 rpm for 15 min at 4 °C, and supernatants were co-incubated with 50-μM Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 833 pterin solution to assay XO activity. After 60-min incubation at 37 °C, fluorometric assays were performed to calculate the production of isoxanthopterin. Activity of purified XO de- rived from buttermilk (Calbiochem) and protein concentration were measured and used to normalize the sample activity. Statistical calculations for significant differences were per- formed by using Student’s t test. Significance was accepted at P<0.05. Vascular and plasma xanthine oxidase activity XO activity in the thoracic aorta of SHRs was significantly higher than that of WKY rats (Fig. 2a). The treatment with febuxostat lowered this activity in both strains (957±214 μU/ mg protein in WKY-C, 463±114 μU/mg protein in WKY-Fx, 2549±427 μU/mg protein in SHR-C, and 805±73 μU/mg protein in SHR-Fx, Fig. 2a). Similarly, the level of XO activity in plasma of SHRs was significantly higher than that of WKY rats (Fig. 2b). Treatment with febuxostat reduced this activity in both strains (80.5±2.2 mU/mL in WKY-C, 19.0±2.5 mU/ mL in WKY-Fx, 113.4 ±6.4 mU/mL in SHR-C, and 31.7 ±2.1 mU/mL in SHR-Fx, Fig. 2b). Improvement in hypertension and endothelial dysfunction Our results showed that the therapeutic dose of febuxostat appropriate for hyperuricemia significantly ameliorated hypertension in SHR. On the other hand, a couple of studies showed that chronic treatment with allopurinol, a classic type of XO inhibitor, failed to lower blood pressure in SHRs (Trachtman et al. 1991; Laakso et al. 1998, 2004; Yamamoto et al. 2006). With respect to the possible mechanisms for the inconsistent results between the two XO inhibitors, a couple of pos- sibilities are raised as follows. First, allopurinol does produce oxidative stress when metabolized to oxypurinol as described above (Galbusera et al. 2006), while febuxostat does not. Second, both allopurinol and oxypurinol showed the limitation to inhibit the endothelial-binding xanthine oxidase (Kelley et al. 2004; Malik et al. 2011). Third, allopurinol has been shown to be more nephrotoxic in SHR than in WKY, thereby masking its beneficial effect on hypertension (Trachtman et al. 1991). These may explain, at least in part, the difference in impact on hypertension of SHR between allopurinol and febuxostat. the thoracic aorta was attenuated in SHR compared to that of WKY rats (P<0.01, Fig. 4a). Febuxostat treatment restored the endothelium-dependent relaxation in comparison to the untreated SHRs (P < 0.05, Fig. 4a). The endothelium- independent relaxation measured using SNP, a direct NO do- nor, was similar in SHRs and WKY rats (Fig. 4b). Febuxostat treatment did not alter the relaxation in response to SNP in both WKY rats and SHRs. the thoracic aorta was attenuated in SHR compared to that of WKY rats (P<0.01, Fig. 4a). Febuxostat treatment restored the endothelium-dependent relaxation in comparison to the untreated SHRs (P < 0.05, Fig. 4a). The endothelium- independent relaxation measured using SNP, a direct NO do- nor, was similar in SHRs and WKY rats (Fig. 4b). Febuxostat treatment did not alter the relaxation in response to SNP in both WKY rats and SHRs. Discussion By using a novel, selective xanthine oxidase inhibitor febuxostat, the present study aimed to investigate the ther- apeutic effects of pharmacological inhibition of XO on hyper- tension and endothelial dysfunction in SHRs. Our data dem- onstrated that the therapeutic dose of febuxostat appropriate for hyperuricemia considerably decreased the SBP, reduced the vascular and plasma XO activity, suppressed the vascular nitrotyrosine level, and improved endothelial dysfunction in SHR. XO inhibitors such as tungsten and allopurinol have been reported to improve endothelial dysfunction in several animal models and human diseases such as atherosclerosis and cor- onary heart disease (Schroder et al. 2006; Dopp et al. 2011; George et al. 2006; Yiginer et al. 2008). Our recent work demonstrated that febuxostat improved endothelial dysfunc- tion also in high-fat diet-induced obese diabetic mice (Masuzaki et al., manuscript submitted). Based on our results in various experimental hypertension models, XO inhibitors may exert favorable effects in several types of endothelial dysfunction. Vascular reactivity Data are expressed as mean±SEM. The responses to ACh and SNP are expressed as percentages of PE contraction. Finally, we evaluated the effect of febuxostat on endothelial function. ACh-induced endothelium-dependent relaxation in Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 834 Table 1 Body weight and plasma uric acid WKY-C WKY-Fx SHR-C SHR-Fx BW (g) 376 ± 5 370 ± 6 384 ± 4 387 ± 4 Uric acid (mg/dL) 0.9 ± 0.1 0.5 ± 0.1** 1.0 ± 0.1NS 0.5 ± 0.1## Values are means ± SEM (n = 9∼10 per group) NS not significant WKY-C vs SHR-C, Student’s t test **P < 0.01 WKY-C vs WKY-Fx, ##P < 0.01 SHR-C vs SHR-Fx Table 1 Body weight and plasma uric acid Mechanism of action of XO inhibition Time (weeks) Systolic blood pressure (mm Hg) 0 2 4 6 300 350 200 150 100 SHR-C SHR-Fx WKY-C WKY-Fx ** * NS Fig. 1 Systolic blood pressure (SBP) in untreated and febuxostat-treated (3 mg/kg/day) spontaneously hypertensive rats and WKY rats. Values are means ± SEM (n = 4∼5 per group). *P < 0.05, **P < 0.01 SHR-C vs SHR-Fx, NS not significant WKY-C vs WKY-Fx, Student’s t test Time (weeks) Systolic blood pressure (mm Hg) 0 2 4 6 300 350 200 150 100 SHR-C SHR-Fx WKY-C WKY-Fx ** * NS In the present study, XO activities in both aorta and plasma from SHRs were significantly elevated as compared to that of WKY rats. Importantly, treatment of febuxostat substan- tially lowered aorta and plasma XO activities in both strains. Circulating XO binds to glycosaminoglycan resi- dues on the surface of endothelium in a partially heparin- reversible manner and subsequently translocates to intra- cellular compartments (Radi et al. 1997; Houston et al. 1999). Although mechanisms whereby plasma XO activity is elevated in SHRs are not yet entirely clarified, it has been reported that XO is released from several organs into systemic circulation in a line of pathophysiology including hepatitis, hemorrhagic shock, sickle cell disease, and is- chemia reperfusion (Yokoyama et al. 1990; Tan et al. 1998; Aslan et al. 2001). SHRs represent a variety of organ dam- ages related to severe hypertension (Liu et al. 2011; Boon Systolic blood pressure Time (weeks) Fig. 1 Systolic blood pressure (SBP) in untreated and febuxostat-treated (3 mg/kg/day) spontaneously hypertensive rats and WKY rats. Values are means ± SEM (n = 4∼5 per group). *P < 0.05, **P < 0.01 SHR-C vs SHR-Fx, NS not significant WKY-C vs WKY-Fx, Student’s t test Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 835 Fig. 2 Xanthine oxidase activity in aorta (a) and plasma (b) obtained from spontaneously hypertensive rats and WKY rats. Values are means ± SEM (n = 6 per group). tP < 0.05, ttP < 0.01 WKY-C vs WKY-Fx, **P < 0.01 WKY-C vs SHR-C, ##P < 0.01 SHR-C vs SHR-Fx, Student’s t test pathophysiological conditions (Pacher et al. 2002a, b, 2005; Szabo et al. 2002a, b, 2004; Ungvari et al. 2005). Hence, suppression of peroxynitrite by febuxostat is also beneficial to ameliorate endothelial dysfunction. et al. 2013). Therefore, XO derived from damaged organs may contribute to the elevation of plasma and vascular XO activities in SHRs. Mechanism of action of XO inhibition Our data demonstrated that endothelial relaxation by ACh was improved in febuxostat-treated SHRs compared with the vehicle-treated SHRs, while the response to SNP in aorta was unaltered. Enhanced ACh-induced relaxation in vascular endothelium by febuxostat is attributed, at least partly, to the increase in NO response, resulting from the scavenge of NO by ROS, which reacts rapidly with NO to form peroxynitrite (Trujillo et al. 1998). To assess the in- volvement of NO scavenge in this experimental paradigm, we measured vascular nitrotyrosine levels. Protein nitrosylation is a representative indicator of peroxynitrite formation in vascular tissues. As expected, SHRs showed significantly elevated nitrotyrosine levels in the aortic ho- mogenate as compared to WKY rats, which were norma- lized by the treatment of febuxostat. Thus, the data suggest that febuxostat attenuates NO scavenge and subsequently increases the availability of NO. Furthermore, peroxynitrite per se induces endothelial and tissue injuries in various It is well documented that elevation of serum uric acid per se is a potent risk for dysfunction of kidney and vas- cular system, resulting in hypertension (Sundstrom et al. 2005; Galbusera et al. 2006; Krishnan et al. 2007; Grayson et al. 2011). In animal models, hyperuricemia in rats leads to increase in blood pressure, while the alleviation of hy- peruricemia with urate-lowering drugs including benzbromarone leads to the reversal of hypertension (Mazzali et al. 2001; Nakagawa et al. 2003; Sanchez- Lozada et al. 2008a, b). In clinical settings, reduction of uric acid with allopurinol in hyperuricemic, hypertensive adolescents did ameliorate blood pressure profile (Feig et al. 2008). In contrast to these findings, the present study used SHRs and the control normotensive WKY rats and compared the results to minimize the possible influence of uric acid-dependent actions, because the serum uric acid level in SHRs is similar to WKY rats (Trachtman et al. 1991; Durante et al. 2010). Treatment of febuxostat equipotently lowers plasma uric acid levels in both WKY rats and SHRs and ameliorated hypertension in SHRs, sug- gesting that the BP-lowering effects of febuxostat are caused by the suppression of ROS production independent of the lowering effect on plasma uric acid. Comparison study using XO inhibitors and other hypouricemic agents such as benzbromarone would be required to test this hypothesis. t Fig. 3 Effect of febuxostat on vascular nitrotyrosine levels in untreated and febuxostat-treated (3 mg/kg/day) spontaneously hypertensive rats and WKY rats. Mechanism of action of XO inhibition Values are means ± SEM (n = 6 per group). tP < 0.05 WKY-C vs WKY-Fx, **P < 0.01 WKY-C vs SHR-C, ##P < 0.01 SHR- C vs SHR-Fx, Student’s t test t Study limitations In the present study, the dose of febuxostat was limited to about 3 mg/kg/day, because the higher dose of febuxostat highly causes xanthine calculi as described (Isa et al. 1968). As a matter of fact, febuxostat at 3 mg/kg/day could not attain the complete inhibition of XO systemically in this study. Therefore, we could not assess the maximal Fig. 3 Effect of febuxostat on vascular nitrotyrosine levels in untreated and febuxostat-treated (3 mg/kg/day) spontaneously hypertensive rats and WKY rats. Values are means ± SEM (n = 6 per group). tP < 0.05 WKY-C vs WKY-Fx, **P < 0.01 WKY-C vs SHR-C, ##P < 0.01 SHR- C vs SHR-Fx, Student’s t test Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 836 0 25 50 75 100 Relative Relaxation (%) SNP WKY-C WKY-Fx SHR-C SHR-Fx Log [SNP(M)] b - -10 -9 -8 -7 -6 -5 -4 -3 11 ACh - -10 -9 -8 -7 -6 -5 -4 -3 0 0 25 25 50 50 75 75 100 100 Log [ACh(M)] Relative Relaxation (%) Relative Relaxation (%) ** # SNP WKY-C WKY-Fx SHR-C SHR-Fx Log [SNP(M)] a b 11 - -10 -9 -8 -7 -6 -5 -4 -3 11 Fig. 4 Concentration-response curves to a acetylcholine and b sodium nitroprusside in aortic rings isolated from untreated and febuxostat- treated spontaneously hypertensive rats and WKY rats. Values are means ± SEM (n = 4∼5 per group). **P < 0.01 WKY-C vs SHR-C, #P < 0.05 vs SHR-C, Student’s t test ACh - -10 -9 -8 -7 -6 -5 -4 -3 0 25 50 75 100 Log [ACh(M)] Relative Relaxation (%) ** # a 11 ACh - -10 -9 -8 -7 -6 -5 -4 -3 0 25 50 75 100 Log [ACh(M)] Relative Relaxation (%) ** # a 11 Fig. 4 Concentration-response curves to a acetylcholine and b sodium nitroprusside in aortic rings isolated from untreated and febuxostat- treated spontaneously hypertensive rats and WKY rats. Values are 0 25 50 75 100 Relative Relaxation (%) SNP WKY-C WKY-Fx SHR-C SHR-Fx Log [SNP(M)] b - -10 -9 -8 -7 -6 -5 -4 -3 11 means ± SEM (n = 4∼5 per group). **P < 0.01 WKY-C vs SHR-C, #P < 0.05 vs SHR-C, Student’s t test a Relative Relaxation (%) means ± SEM (n = 4∼5 per group). **P < 0.01 WKY-C vs SHR-C, #P < 0.05 vs SHR-C, Student’s t test Fig. Compliance with ethical standards Funding This research was supported by Teijin Pharma Limited. Conflict of interest Dr. Masuzaki declares no conflicts of interest. Dr. Masuzaki is supported in part by Grants-in-Aid from the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT) KAKENHI [Grant 24591338, (2012∼2014)] and by Special Account Budget for Education and Research (2011∼2015) granted by the Japan Ministry of Education, Culture, Sports, Science and Technology of Japan. Ethical approval All procedures performed in studies involving ani- mals were in accordance with the ethical standards of the Teijin Institute for Bio-Medical Research Institute, Teijin Pharma Limited, Tokyo, Japan. With respect to the prediction of clinical efficacy of XO inhibition, we should be careful about extrapolating the results in experimental animals to humans. Importantly, unlike humans, almost all animals including rodents have uricase, a urate oxidase enzyme. Although few animal species that mim- ic uric acid metabolism in humans are known (Oda et al. 2002; Bannasch et al. 2008), there seems no available model of hypertension in these species. Therefore, clinical studies are required to verify the effects of XO inhibition on the hypertension and endothelial dysfunction in human pathophysiology. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http:// creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appro- priate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Study limitations 4 Concentration-response curves to a acetylcholine and b sodium nitroprusside in aortic rings isolated from untreated and febuxostat- treated spontaneously hypertensive rats and WKY rats. Values are valuable not only for hyperuricemia but also for treating some forms of hypertension and related endothelial dysfunction in humans. effects of febuxostat on the hypertension and endothelial dysfunction in the current experimental setting. The pres- ent study used SHR as a representative animal model of hypertension and demonstrated the potential anti- hypertensive effects by pharmacological XO inhibition. Recently, Boban et al. reported that circulating xanthine oxidase activity was increased in patients with essential hypertension (Boban et al. 2014), which is consistent with our results that plasma XO activity was considerably ele- vated in SHR. Therefore, XO inhibitor may be beneficial for the treatment of some forms of hypertension in humans. However, there is little information about the relationship between plasma XO activity and other forms of hyperten- sion such as renal hypertension and pulmonary hyperten- sion. In this context, further studies are warranted to clarify the clinical implication of XO inhibition in various types of diseases. References doi:10.1016/j.freeradbiomed.2011.04.004 Galbusera C, Orth P, Fedida D, Spector T (2006) Superoxide radical production by allopurinol and xanthine oxidase. Biochem Pharmacol 71:1747–1752. doi:10.1016/j.bcp.2006.02.008 Med 51:179–184. doi:10.1016/j.freeradbiomed.2011.04.004 Mazzali M, Hughes J, Kim YG, Jefferson JA, Kang DH, Gordon KL, Lan HY, Kivlighn S, Johnson RJ (2001) Elevated uric acid increases blood pressure in the rat by a novel crystal-independent mechanism. Hypertension 38:1101–1106 George J, Carr E, Davies J, Belch JJ, Struthers A (2006) High-dose allopurinol improves endothelial function by profoundly reducing vascular oxidative stress and not by lowering uric acid. Circulation 114:2508–2516 Morawietz H, Weber M, Rueckschloss U, Lauer N, Hacker A, Kojda G (2001) Upregulation of vascular NAD(P)H oxidase subunit gp91phox and impairment of the nitric oxide signal transduction pathway in hypertension. Biochem Biophys Res Commun 285: 1130–1135. doi:10.1006/bbrc.2001.5312 Grayson PC, Kim SY, LaValley M, Choi HK (2011) Hyperuricemia and incident hypertension: a systematic review and meta-analysis. Arthritis Care Res 63:102–110. doi:10.1002/acr.20344 Grossman E (2008) Does increased oxidative stress cause hypertension? Diabetes Care 31(Suppl 2):S185–189. doi:10.2337/dc08-s246 Nakagawa T, Mazzali M, Kang DH, Kanellis J, Watanabe S, Sanchez- Lozada LG, Rodriguez-Iturbe B, Herrera-Acosta J, Johnson RJ (2003) Hyperuricemia causes glomerular hypertrophy in the rat. Am J Nephrol 23:2–7 Harrison R (2002) Structure and function of xanthine oxidoreductase: where are we now? Free Radic Biol Med 33:774–797 Horiuchi H, Ota M, Kobayashi M, Kaneko H, Kasahara Y, Nishimura S, Kondo S, Komoriya K (1999) A comparative study on the hypouricemic activity and potency in renal xanthine calculus forma- tion of two xanthine oxidase/xanthine dehydrogenase inhibitors: TEI-6720 and allopurinol in rats. Res Commun Mol Pathol Pharmacol 104:307–319 Nickenig G, Harrison DG (2002) The AT(1)-type angiotensin receptor in oxidative stress and atherogenesis: part I: oxidative stress and ath- erogenesis. Circulation 105:393–396 Oda M, Satta Y, Takenaka O, Takahata N (2002) Loss of urate oxidase activity in hominoids and its evolutionary implications. Mol Biol Evol 19:640–653 Houston M, Estevez A, Chumley P, Aslan M, Marklund S, Parks DA, Freeman BA (1999) Binding of xanthine oxidase to vascular endo- thelium. Kinetic characterization and oxidative impairment of nitric oxide-dependent signaling. J Biol Chem 274:4985–4994 Okamoto K, Eger BT, Nishino T, Kondo S, Pai EF (2003) An extremely potent inhibitor of xanthine oxidoreductase. Crystal structure of the enzyme-inhibitor complex and mechanism of inhibition. J Biol Chem 278:1848–1855. References doi:10.2337/ dc08-s245 Laakso JT, Teravainen TL, Martelin E, Vaskonen T, Lapatto R (2004) Renal xanthine oxidoreductase activity during development of hy- pertension in spontaneously hypertensive rats. J Hypertens 22: 1333–1340 Cutler JA, Sorlie PD, Wolz M, Thom T, Fields LE, Roccella EJ (2008) Trends in hypertension prevalence, awareness, treatment, and con- trol rates in United States adults between 1988–1994 and 1999– 2 0 0 4 . H y p e r t e n s i o n 5 2 : 8 1 8 – 8 2 7 . d o i : 1 0 . 11 6 1 / HYPERTENSIONAHA.108.113357 Landmesser U, Dikalov S, Price SR, McCann L, Fukai T, Holland SM, Mitch WE, Harrison DG (2003) Oxidation of tetrahydrobiopterin leads to uncoupling of endothelial cell nitric oxide synthase in hy- pertension. J Clin Invest 111:1201–1209. doi:10.1172/JCI14172 Dopp JM, Philippi NR, Marcus NJ, Olson EB, Bird CE, Moran JJ, Mueller SW, Morgan BJ (2011) Xanthine oxidase inhibition atten- uates endothelial dysfunction caused by chronic intermittent hypox- ia in rats. Respir Int Rev Thorac Dis 82:458–467 Li H, Horke S, Forstermann U (2013) Oxidative stress in vascular disease and its pharmacological prevention. Trends Pharmacol Sci 34:313– 319 Durante P, Chavez M, Perez M, Romero F, Rivera F (2010) Effect of uric acid on hypertension progression in spontaneously hypertensive rats. Life Sci 86:957–964. doi:10.1016/j.lfs.2010.05.004 Liu W, Wang W, Song SW, Gu XF, Ma XJ, Su FY, Zhang H, Liu AJ, Su DF (2011) Synergism of telmisartan and amlodipine on blood pres- sure reduction and cardiorenal protection in hypertensive rats. J Cardiovasc Pharmacol 57:308–316. doi:10.1097/FJC. 0b013e3182073e41 Feig DI, Soletsky B, Johnson RJ (2008) Effect of allopurinol on blood pressure of adolescents with newly diagnosed essential hyperten- sion: a randomized trial. JAMA J Am Med Assoc 300:924–932. doi:10.1001/jama.300.8.924 Lockette W, Otsuka Y, Carretero O (1986) The loss of endothelium- dependent vascular relaxation in hypertension. Hypertension 8: II61–66 Fukui T, Ishizaka N, Rajagopalan S, Laursen JB, Capers Q, Taylor WR, Harrison DG, de Leon H, Wilcox JN, Griendling KK (1997) p22phox mRNA expression and NADPH oxidase activity are in- creased in aortas from hypertensive rats. Circ Res 80:45–51 Malik UZ, Hundley NJ, Romero G, Radi R, Freeman BA, Tarpey MM, Kelley EE (2011) Febuxostat inhibition of endothelial-bound XO: implications for targeting vascular ROS production. Free Radic Biol Med 51:179–184. References Aslan M, Ryan TM, Adler B, Townes TM, Parks DA, Thompson JA, Tousson A, Gladwin MT, Patel RP, Tarpey MM, Batinic-Haberle I, White CR, Freeman BA (2001) Oxygen radical inhibition of nitric oxide-dependent vascular function in sickle cell disease. Proc Natl Acad Sci U S A 98:15215–15220. doi:10.1073/pnas.221292098 In conclusion, present study demonstrates that exaggerated XO activity and resultant increase in oxidative stress in SHRs contribute, at least partly, to their hypertension and endothelial dysfunction. This notion was endorsed by the finding that chronic treatment of selective XO inhibitor febuxostat improves a line of vascular phenotypes. Our data suggest that pharmacological inhibition of exaggerated XO may be Augustin AJ, Boker T, Blumenroder SH, Lutz J, Spitznas M (1994) Free radical scavenging and antioxidant activity of allopurinol and oxypurinol in experimental lens-induced uveitis. Invest Ophthalmol Vis Sci 35:3897–3904 Bannasch D, Safra N, Young A, Karmi N, Schaible RS, Ling GV (2008) Mutations in the SLC2A9 gene cause hyperuricosuria and hyperuri- cemia in the dog. PLoS Genet 4:e1000246 837 Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 inhibition by oxypurinol. J Biol Chem 279:37231–37234. doi:10. 1074/jbc.M402077200 Boban M, Kocic G, Radenkovic S, Pavlovic R, Cvetkovic T, Deljanin-Ilic M, Ilic S, Bobana MD, Djindjic B, Stojanovic D, Sokolovic D, Jevtovic-Stoimenov T (2014) Circulating purine compounds, uric acid, and xanthine oxidase/dehydrogenase relationship in essential hypertension and end stage renal disease. Ren Fail 36:613–618 Kerr S, Brosnan MJ, McIntyre M, Reid JL, Dominiczak AF, Hamilton CA (1999) Superoxide anion production is increased in a model of genetic hypertension: role of the endothelium. Hypertension 33: 1353–1358 Boon CM, Ng MH, Choo YM, Mok SL (2013) Super, red palm and palm oleins improve the blood pressure, heart size, aortic media thickness and lipid profile in spontaneously hypertensive rats. PLoS One 8, e55908. doi:10.1371/journal.pone.0055908 Krishnan E, Kwoh CK, Schumacher HR, Kuller L (2007) Hyperuricemia and incidence of hypertension among men without metabolic syn- drome. Hypertension 49:298–303. doi:10.1161/01.HYP. 0000254480.64564.b6 Boueiz A, Damarla M, Hassoun PM (2008) Xanthine oxidoreductase in respiratory and cardiovascular disorders. Am J Physiol Lung Cell Mol Physiol 294:L830–840. doi:10.1152/ajplung.00007.2008 Laakso J, Mervaala E, Himberg JJ, Teravainen TL, Karppanen H, Vapaatalo H, Lapatto R (1998) Increased kidney xanthine oxidore- ductase activity in salt-induced experimental hypertension. Hypertension 32:902–906 Ceriello A (2008) Possible role of oxidative stress in the pathogenesis of hypertension. Diabetes Care 31(Suppl 2):S181–184. References doi:10.1074/jbc.M208307200 Isa M, Hayashi G, Kowa Y (1968) Effects of xanthine oxidase inhibitor, 4-hydroxypyrazolo-(3, 4-d)-pyrimidine(zyloric) on the nucleic acid metabolism and its pharmacological actions. 1. Nihon Yakurigaku Zasshi 64:108–122 Ong SL, Vickers JJ, Zhang Y, McKenzie KU, Walsh CE, Whitworth JA (2007) Role of xanthine oxidase in dexamethasone-induced hy- pertension in rats. Clin Exp Pharmacol Physiol 34:517–519. doi:10. 1111/j.1440-1681.2007.04605.x Kelley EE, Trostchansky A, Rubbo H, Freeman BA, Radi R, Tarpey MM (2004) Binding of xanthine oxidase to glycosaminoglycans limits Pacher P, Liaudet L, Mabley J, Komjati K, Szabo C (2002a) Pharmacologic inhibition of poly(adenosine diphosphate-ribose) 838 Naunyn-Schmiedeberg's Arch Pharmacol (2016) 389:831–838 polymerase may represent a novel therapeutic approach in chronic heart failure. J Am Coll Cardiol 40:1006–1016 Tanito M, Nakamura H, Kwon YW, Teratani A, Masutani H, Shioji K, Kishimoto C, Ohira A, Horie R, Yodoi J (2004) Enhanced oxidative stress and impaired thioredoxin expression in spontaneously hyper- tensive rats. Antioxid Redox Signal 6:89–97. doi:10.1089/ 152308604771978381 Pacher P, Mabley JG, Soriano FG, Liaudet L, Komjati K, Szabo C (2002b) Endothelial dysfunction in aging animals: the role of poly(ADP-ribose) polymerase activation. Br J Pharmacol 135: 1347–1350. doi:10.1038/sj.bjp.0704627 Tian N, Thrasher KD, Gundy PD, Hughson MD, Manning RD Jr (2005) Antioxidant treatment prevents renal damage and dysfunction and reduces arterial pressure in salt-sensitive hypertension. Hypertension 45:934–939. doi:10.1161/01.HYP.0000160404. 08866.5a Pacher P, Schulz R, Liaudet L, Szabo C (2005) Nitrosative stress and pharmacological modulation of heart failure. Trends Pharmacol Sci 26:302–310. doi:10.1016/j.tips.2005.04.003 Radi R, Rubbo H, Bush K, Freeman BA (1997) Xanthine oxidase binding to glycosaminoglycans: kinetics and superoxide dismutase interac- tions of immobilized xanthine oxidase-heparin complexes. Arch Biochem Biophys 339:125–135. doi:10.1006/abbi.1996.9844 Touyz RM (2004) Reactive oxygen species, vascular oxidative stress, and redox signaling in hypertension: what is the clinical significance? Hypertension 44:248–252. doi:10.1161/01.HYP.0000138070. 47616.9d Sanchez-Lozada LG, Tapia E, Bautista-Garcia P, Soto V, Avila-Casado C, Vega-Campos IP, Nakagawa T, Zhao L, Franco M, Johnson RJ (2008a) Effects of febuxostat on metabolic and renal alterations in rats with fructose-induced metabolic syndrome. Am J Physiol Ren Physiol 294:F710–718. doi:10.1152/ajprenal.00454.2007 Trachtman H, Valderrama E, Futterweit S (1991) Nephrotoxicity of allo- purinol is enhanced in experimental hypertension. Hypertension 17: 194–202 Trujillo M, Alvarez MN, Peluffo G, Freeman BA, Radi R (1998) Xanthine oxidase-mediated decomposition of S-nitrosothiols. References J Biol Chem 273:7828–7834 Sanchez-Lozada LG, Tapia E, Soto V, Avila-Casado C, Franco M, Zhao L, Johnson RJ (2008b) Treatment with the xanthine oxidase inhib- itor febuxostat lowers uric acid and alleviates systemic and glomer- ular hypertension in experimental hyperuricaemia. Nephrol, Dial, Transplant Off Publ Eur Dial Transplant Assoc Eur Ren Assoc 23: 1179–1185. doi:10.1093/ndt/gfm783 Ungvari Z, Gupte SA, Recchia FA, Batkai S, Pacher P (2005) Role of oxidative-nitrosative stress and downstream pathways in various forms of cardiomyopathy and heart failure. Curr Vasc Pharmacol 3:221–229 Viel EC, Benkirane K, Javeshghani D, Touyz RM, Schiffrin EL (2008) Xanthine oxidase and mitochondria contribute to vascular superoxide anion generation in DOCA-salt hypertensive rats. Am J Physiol Heart Circ Physiol 295:H281–288. doi:10.1152/ajpheart.00304.2008 Schroder K, Vecchione C, Jung O, Schreiber JG, Shiri-Sverdlov R, van Gorp PJ, Busse R, Brandes RP (2006) Xanthine oxidase inhibitor tungsten prevents the development of atherosclerosis in ApoE knockout mice fed a Western-type diet. Free Radic Biol Med 41: 1353–1360 Yamamoto Y, Ogino K, Igawa G, Matsuura T, Kaetsu Y, Sugihara S, Matsubara K, Miake J, Hamada T, Yoshida A, Igawa O, Yamamoto T, Shigemasa C, Hisatome I (2006) Allopurinol reduces neointimal hyperplasia in the carotid artery ligation model in spon- taneously hypertensive rats. Hypertens Res Off J Jpn Soc Hypertens 29:915–921. doi:10.1291/hypres.29.915 Sundstrom J, Sullivan L, D’Agostino RB, Levy D, Kannel WB, Vasan RS (2005) Relations of serum uric acid to longitudinal blood pres- sure tracking and hypertension incidence. Hypertension 45:28–33. doi:10.1161/01.HYP.0000150784.92944.9a Szabo C, Mabley JG, Moeller SM, Shimanovich R, Pacher P, Virag L, Soriano FG, Van Duzer JH, Williams W, Salzman AL, Groves JT (2002a) Part I: pathogenetic role of peroxynitrite in the development of diabetes and diabetic vascular complications: studies with FP15, a l t t it it d iti t l t M l M d 8 571 580 Yiginer O, Ozcelik F, Inanc T, Aparci M, Ozmen N, Cingozbay BY, Kardesoglu E, Suleymanoglu S, Sener G, Cebeci BS (2008) Allopurinol improves endothelial function and reduces oxidant-in- flammatory enzyme of myeloperoxidase in metabolic syndrome. Clin Res Cardiol Off J Ger Card Soc 97:334–340 Szabo C, Zanchi A, Komjati K, Pacher P, Krolewski AS, Quist WC, LoGerfo FW, Horton ES, Veves A (2002b) Poly(ADP-Ribose) polymerase is activated in subjects at risk of developing type 2 diabetes and is associ- ated with impaired vascular reactivity. References Circulation 106:2680–2686 Yokoyama Y, Beckman JS, Beckman TK, Wheat JK, Cash TG, Freeman BA, Parks DA (1990) Circulating xanthine oxidase: potential me- diator of ischemic injury. Am J Phys 258:G564–570 Zhang Y, Chan MM, Andrews MC, Mori TA, Croft KD, McKenzie KU, Schyvens CG, Whitworth JA (2005) Apocynin but not allopurinol prevents and reverses adrenocorticotropic hormone-induced hyper- tension in the rat. Am J Hypertens 18:910–916. doi:10.1016/j. amjhyper.2005.02.017 Szabo C, Pacher P, Zsengeller Z, Vaslin A, Komjati K, Benko R, Chen M, Mabley JG, Kollai M (2004) Angiotensin II-mediated endothelial dysfunction: role of poly(ADP-ribose) polymerase activation. Mol Med 10:28–35 Tan S, McAdams M, Royall J, Freeman BA, Parks DA (1998) Endothelial injury from a circulating mediator following rat liver ischemia. Free Radic Biol Med 24:427–434 Zicha J, Kunes J (1999) Ontogenetic aspects of hypertension develop- ment: analysis in the rat. Physiol Rev 79:1227–1282
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Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low-Grade Glioma Microenvironment
Frontiers in oncology
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ORIGINAL RESEARCH published: 07 September 2021 doi: 10.3389/fonc.2021.676124 Xiuqin Lu 1†, Chuanyu Li 2†, Wenhao Xu 3†, Yuanyuan Wu 4†, Jian Wang 5, Shuxian Chen 6, Hailiang Zhang 3, Huadong Huang 2*, Haineng Huang 2* and Wangrui Liu 1,2* 1 Department of Nursing and Health Management, Shanghai University of Medicine & Health Sciences, Shanghai, China, 2 Department of Neurosurgery, Affiliated Hospital of Youjiang Medical University for Nationalities, Guangxi, China, 3 Department of Urology, Fudan University Shanghai Cancer Center, Shanghai Medical University, Fudan University, Shanghai, China, 4 Department of Gastroenterology, Naval Medical Center of People’s Liberation Army (PLA) of China, Naval Military Medical University, Shanghai, China, 5 Department of Transplantation, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China, 6 Department of Oncology, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China Keywords: tumor microenvironment, tumor purity, CD3E, low-grade glioma, prognosis, immune infiltrations *Correspondence: Huadong Huang dongdongh@126.com Haineng Huang bsuanghn@163.com Wangrui Liu cowdl@126.com †These authors have contributed equally to this work *Correspondence: Huadong Huang dongdongh@126.com Haineng Huang bsuanghn@163.com Wangrui Liu cowdl@126.com †These authors have contributed equally to this work *Correspondence: Huadong Huang dongdongh@126.com Haineng Huang bsuanghn@163.com Wangrui Liu cowdl@126.com †These authors have contributed equally to this work Specialty section: This article was submitted to Neuro-Oncology and Neurosurgical Oncology, a section of the journal Frontiers in Oncology Specialty section: This article was submitted to Neuro-Oncology and Neurosurgical Oncology, a section of the journal Frontiers in Oncology Received: 04 March 2021 Accepted: 02 July 2021 Published: 07 September 2021 Specialty section: This article was submitted to Neuro-Oncology and Neurosurgical Oncology, a section of the journal Frontiers in Oncology Received: 04 March 2021 Accepted: 02 July 2021 Published: 07 September 2021 Edited by: Haotian Zhao, New York Institute of Technology, United States Reviewed by: Zihang Zeng, Wuhan University, China Wen Yin, Central South University, China Sutatip Pongcharoen, Naresuan University, Thailand *Correspondence: Huadong Huang dongdongh@126.com Haineng Huang bsuanghn@163.com Wangrui Liu cowdl@126.com †These authors have contributed equally to this work Reviewed by: Zihang Zeng, Wuhan University, China Wen Yin, Central South University, China Sutatip Pongcharoen, Naresuan University, Thailand Reviewed by: Zihang Zeng, Wuhan University, China Wen Yin, Central South University, China Sutatip Pongcharoen, Naresuan University, Thailand The tumor microenvironment (TME) contributes to the initiation and progression of many neoplasms. However, the impact of low-grade glioma (LGG) purity on carcinogenesis remains to be elucidated. We selected 509 LGG patients with available genomic and clinical information from the TCGA database. The percentage of tumor infiltrating immune cells and the tumor purity of LGG were evaluated using the ESTIMATE and CIBERSORT algorithms. Stromal-related genes were screened through Cox regression, and protein- protein interaction analyses and survival-related genes were selected in 487 LGG patients from GEO database. Hub genes involved in LGG purity were then identified and functionally annotated using bioinformatics analyses. Prognostic implications were validated in 100 patients from an Asian real-world cohort. Elevated tumor purity burden, immune scores, and stromal scores were significantly associated with poor outcomes and increased grade in LGG patients from the TCGA cohort. In addition, CD3E was selected with the most significant prognostic value (Hazard Ratio=1.552, P<0.001). Differentially expressed genes screened according to CD3E expression were mainly involved in stromal related activities. Additionally, significantly increased CD3E expression was found in 100 LGG samples from the validation cohort compared with adjacent normal brain tissues. High CD3E expression could serve as an independent prognostic indicator for survival of LGG patients and promotes malignant cellular biological behaviors of LGG. In conclusion, tumor purity has a considerable impact on the clinical, genomic, and biological status of LGG. CD3E, the gene for novel membrane immune biomarker deeply affecting tumor purity, may help to evaluate the prognosis and develop individual immunotherapy strategies for LGG patients. Evaluating the ratio of differential tumor purity and CD3E expression levels may provide novel insights into the complex structure of the LGG microenvironment and targeted drug development. Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low-Grade Glioma Microenvironment Xiuqin Lu 1†, Chuanyu Li 2†, Wenhao Xu 3†, Yuanyuan Wu 4†, Jian Wang 5, Shuxian Chen 6, Hailiang Zhang 3, Huadong Huang 2*, Haineng Huang 2* and Wangrui Liu 1,2* BACKGROUND We selected 509 LGG patients from The Cancer Genome Atlas (TCGA) dataset and calculated the percentage of TICs and tumor purity of each LGG tumor through ESTIMATE and CIBERSORT calculation methods. We also calculated the ratio of immune and matrix components and selected the inter- sample screening in the Gene Expression Omnibus (GEO). LGG genes associated with prognosis were identified and the predictive biomarker CD3E was found. The T cell antigen receptor epsilon subunit (CD3E) gene is located on chromosome 11q23.3, composed of nine exons, and is associated with autosomal recessive hereditary early-onset immunodeficiency 18 phenotype, which is a severe combined immunodeficiency variant (27). Moreover, CD3E is overexpressed in certain solid tumors and is associated with immunity (28, 29). Among the differentially expressed genes (DEGs) produced by comparing immunological and matrix components in LGG samples, we determined that CD3E is a potential indicator of TME status changes in LGG. This gene may affect the tumor microenvironment of LGG by regulating T cells, which may be completely different from the tumor microenvironment of other organs outside the skull. The higher the expression of CD3E is, the worse the prognosis of LGG patients is. The treatment and prognosis of glioma are relatively limited because the understanding of immune gene regulation and carcinogenesis is incomplete (1, 2). In the United States, the annual incidence of pediatric low-grade glioma (LGG) is 1.3-2.1 cases per 100,000 people, while adult LGG is more common with an estimated 9.1-12.5 cases per 100,000 people (3, 4). Glioblastoma multiforme (Grade IV) is the second most common primary intracranial tumor, and the most common malignant tumor of the central nervous system. GBM accounts for 15.4% of all primary brain tumors and 45.6% of primary malignant brain tumors. Grade I gliomas are essentially benign and respectable (5). A large number of clinical studies have found that the survival rate of LGG patients is low, and many patients have a sharp decline in survival time from tumor deterioration in the later stage (6). The high recurrence and malignancy rates of LGG are detrimental to patients (7, 8). Investigating approaches to maintain the quality of life of LGG patients while prolonging their overall survival (OS) has become a common focus for clinicians and researchers (9–12). The rapid development of modern bioinformatics and phenotyping has provided great convenience to our research (13–15). Citation: Lu X, Li C, Xu W, Wu Y, Wang J, Chen S, Zhang H, Huang H, Huang H and Liu W (2021) Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low- Grade Glioma Microenvironment. Front. Oncol. 11:676124. doi: 10.3389/fonc.2021.676124 September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 1 Tumor Microenvironment and CD3E in LGG Lu et al. BACKGROUND Recent work has suggested that the tumor microenvironment (TME) can facilitate the development of tumors (16, 17). The interactions between cancer cells, stromal cells, and recruited immune cells promote the invasion and metastasis of a variety of cancers, as well as cell proliferation, anti-apoptosis signals, and evasion of immune surveillance. This significantly impacts the treatment and prognosis of cancer patients (18, 19). The TME is mainly composed of resident stromal cells and recruited immune cells (20), which affect tumor blood vessel growth and tumor proliferation, respectively. Additionally, tumor-infiltrating immune cells (TICs) in the TME can be used to determine patient prognosis (21), and the related immune genes have an impact on cancer patient survival (22, 23). This correlation has led to improvements in immune- based treatment methods to create immune checkpoint inhibitors and identify prognostic biomarkers for tumor patients (24–26). These studies suggest that the various immune responses of the LGG TME may change the purity of the tumor, thereby affecting the invasive and metastatic abilities of LGG. There is a reported strong connection between LGG and the TME. The higher the stromal and immune scores of LGG display, the lower the purity and higher the aggressiveness of the tumor show. Low glioma purity shows a strong immunophenotype and suggests a poor prognosis (27). Thus, clinicians and basic science researchers are required to identify tumor purities that accurately reflect the LGG heterogeneity and complex role of the microenvironment, which may also help to discover novel biomarkers of LGG. Abbreviations: AHYMUN, Affiliated Hospital of YouJiang Medical University for Nationalities; GEO, Gene Expression Omnibus; GO, Gene Ontology; GSEA, Gene Set Enrichment Analysis; HR, hazard ratio; IHC, immunohistochemistry; KEGG, Kyoto Encyclopedia of Genes and Genomes; LGG, Low grade glioma; OS, overall survival; PPI, Protein-protein interaction; TCGA, the Cancer Genome Atlas; TIC, tumor-infiltrating immune cells; TME, tumor microenvironment. Data Collection This study included 509 patients from TCGA (30) database and 487 patients from GEO (30, 31) databases (three datasets, GSE107850 on GPL14951, GSE26576 on GPL6801 and GPL570, GSE20395 on GPL9183, were selected as the second testing cohort for further analysis) two independent testing cohorts. To further improve the clinical value of the study, a total of 100 LGG patients, who underwent surgery in Affiliated Hospital of YouJiang Medical University for Nationalities (AHYMUN, Baise, China) from June 2014 to July 2019, were enrolled in this study. Clinical data of LGG patients that may affect the OS and disease-free survival (DFS) were collected, including age, gender, epilepsy history, capsular invasion Karnofsky score and tumor envelope infiltration. LGG patients with available RNA sequencing data from the Cancer Genome Atlas (TCGA) database (https://tcga-data.nci. nih.gov/tcga/) were consecutively recruited for the analyses from UCSC Xena (http://xena.ucsc.edu/). UCSC Xena is an online exploration tool for public and private, multi-omic and clinical/phenotype data, and provided level 3 data from TCGA databases. The gene expression profile was measured experimentally using the Illumina HiSeq 2000 RNA Sequencing platform by the University of North Carolina TCGA genome characterization center. Single-Cell Datasets Processing and Collection Tumor Immune Single-cell Hub (TISCH, http://tisch.comp- genomics.org/home/) is used to screen for scRNA-seq datasets with detailed cell-type annotation at the single-cell level focusing on tumor microenvironment across different cancers. GSE131928 10X (n = 9, number of cells = 13,553), GSE131928 Smartseq2 (n = 28, number of cells = 7,930), GSE135437 (n = 19, number of cells = 12,559), GSE139448 (n = 3, number of cells = 12,152), GSE141982 (n = 2. Number of cells = 526) and GSE148842 (n = 7, number of cells = 111,397) were enrolled with correlation analysis between CD3E expression and abundance of immune cells infiltrations. Screening for Differential Expressed Genes p Using “LIMMA” (37) in R software, standardize the data and perform differential expression analysis. Put the relevant code into R, and analyze the DEGs in LGG samples and normal brain tissue samples through the limma software package. P value < 0.05 and Log2FC > 1 was set as the threshold for identifying Clinical-related DEGs. Immunohistochemistry Immunohistochemistry streptavidin peroxidase method was used to detect the expression of CD3E in tumor, immune and stromal cells from LGG and adjacent normal tissues (43). Immunostaining of CD3E was performed using a rabbit monoclonal anti-CD3E antibody (1:1000, ab237721, Abcam). Positive or negative staining of a certain protein in one FFPE slide was independently assessed by two experienced clinicians, and determined as follows. The LGG samples were scored according to the degree of cell staining intensity and density. Intensity score: 0, cytoplasmic yellow particles; 1, light brown particles; 2, obvious brown particles; 3, a large number of dark brown particles. Density score (according to the percentage of positive cells): 0, 0%, 1, <10%, 2.11%-50%, 3, 51-80%, 4, 80%. The final IHC score is calculated by multiplying the two scores. Online Public and Real World Cohorts This study included 509 patients from TCGA database and 487 patients from GEO database (GSE107850, GSE60898, GSE26576) as two independent testing cohorts. To further improve the clinical value of the study, a total of 100 LGG patients, who underwent surgery in Affiliated Hospital of YouJiang Medical University for Nationalities (AHYMUN) from June 2014 to July 2019, were enrolled in this study. Clinical data of LGG patients that may affect the OS and disease-free survival (DFS) were collected, including age, gender, epilepsy history, capsular invasion Karnofsky score and tumor envelope infiltration. Tissue samples were collected during surgery and available from AHYMUN tissue bank. IHC staining of CD3E was performed using a mouse monoclonal anti-CD3E antibody (1:800, ab16669, Abcam, USA) in 100 LGG samples. Positive or negative staining of CD3E protein in a FFPE slide was independently evaluated as previously described (36). Cells and Plasmids According to the median of the Immune score and the Stromal score, we grouped high and low samples, so as to screen out the TME related genes that highly involved in heterogeneity of tumor immune environment. The 509 LGG samples in the TCGA database were marked as high or low. Use package limma to conduct differential analysis of gene expression, and generate Stromal related DEGs by comparing high and low score samples. Stromal related DEGs (high/low score group) and false discovery rate < 0.05 with a fold change greater than 1 after log2 conversion were considered significant. We calculated the TIC value in all LGG data by the CIBERSORT method, and the samples with P < 0.05 can be further analyzed. Two human glioma cell lines (N9, N33) were cultured in Dulbecco’s modified Eagle medium: nutrient mixture F-12 (DMEM: F12, 01-172-1ACS, Biological Industries) and 10% fetal bovine serum (FBS), 04-001-1A, Bioindustry). CD3E siRNA duplexes were transfected using Lipofectamine 3000 reagent (Invitrogen, USA) according to the manufacturer’s protocol. Cells were used for further analyses after transfection for 48 h. The sequences of siRNA duplexes are listed below: siRNA1#: 5’-UUCUUCAUUACCAUCUUGCCC-3’, siRNA2#: 5’-UAAUACCACCCAUUUCUUCAU-3’. Western Blot After the specified treatment, the cells were harvested and lysed in RIPA buffer and quantified by the bicinchoninic acid assay kit (Pierce, USA). The total protein was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) under denaturing conditions and transferred to a nitrocellulose filter (NC) membrane. The membrane was incubated with blocking buffer for 2 hours at room temperature and then with the primary antibody anti-CD3E (1:1000, ab237721, Abcam) overnight at 4°C. Then, the protein was visualized using ECL plus western blotting detection reagents (Biosciences) and detected with an enhanced chemiluminescence kit. Tumor Purity Calculation R software (32) (version 4.0.0) was used to estimate the proportion of TME immune cells and stromal cells in each LGG sample. We use the ssGSEA algorithm to calculate ImmuneScore, StromalScore and ESTIMATEScore (33, 34). September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 2 Tumor Microenvironment and CD3E in LGG Lu et al. The CIBERSORT algorithm is used to calculate the proportion of immune cells in LGG (35). The CIBERSORT algorithm is used to calculate the proportion of immune cells in LGG (35). analyze the entire transcriptome of all tumor samples (42), and only genomes with p<0.05 are considered important. Cell Counting Kit‐8 Assay studies focused on the impact of CD3E on survival, GSEA, and correlation with TICs. Functional annotations of neighboring genes and clinical validation of CD3E were performed. Finally, we entered the research conclusions in our own AHYMUN center for clinical cohort study. 100 microliters of N9 and N33 cell suspension (5 × 104) were added to each well of a 96-well plate, with triple wells in each group. The culture plate was placed in the incubator for pre- culture for 24 hours until the cells stick to the culture dish. Then, we add different concentrations of culture medium to the wells for 24 hours, and add normal and high-sugar medium to the culture plate. After 24 hours, 10 ml CCK-8 solution (#CK04; Dojindo, Japan) was added to each well, and then incubate for 2 hours. Statistical Analysis y In this study, R (Version 3.3.2) and RStudio (Version 1.2) were utilized to perform most data analyses, including Cox regression analyses (44), Kaplan-Meier plots (45), risk plots, PPI network and functional annotations. All tests were two-sided and p-value less than 0.05 were taken as significant. The scatter plot was used to represent the differential expression of CD3E in normal and LGG tissues. The primary endpoint, the overall survival of patients who survived specific period of time, which was determined based on the length of time from the date of surgery to the date of death or the date of the last follow-up. Disease-free survival as a secondary endpoint refers to the length of time from the start of curative treatment for which no disease can be found to the date of progression to the date of starting second-line treatment or starting treatment. We combined the corresponding clinical information of TCGA LGG patients with the above calculated scores to determine whether the LGG TME and tumor purity are related to the patient’s clinical characteristics. ImmuneScore positively correlated with high grade LGG (Figures 3A–C, P < 0.001), StromalScore also positively correlated with high grade LGG (Figures 3D–F, P < 0.001), and ESTIMATEScore accompanied with high grade LGG (Figures 3G–I, P < 0.001). These results indicate that tumor purity and the ESTIMATE scores in the TME are related to the deterioration of LGG. The higher the ESTIMATE scores in the TME, the lower the purity of the tumor and the worse the prognosis of LGG patients. Transwell Assay Cell invasion ability was assessed using the Transwell chamber (BD Biosciences). A total of 2 × 105 cells were plated on top of a polycarbonate Transwell filter with 200 mL serum-free medium. The lower compartment is filled with 500 mL of complete medium (1640 + 10% fetal bovine serum). After 24 hours, cells in the upper chamber were removed with cotton swabs, and cells on the underside were fixed with 4% paraformaldehyde for 10 minutes at room temperature. After been washed and air drying, stained cells in four randomly selected fields were photographed and counted under a light microscope (Olympus, Tokyo, Japan). Functional Enrichment Analysis The protein-protein interaction (PPI) network is constructed from the STRING (38) database. All gene interaction networks were drawn by Cytoscape (version 3.8.0.) (39). We performed gene ontology (GO) enrichment analysis of DEGs through R software, and determined the biological processes (BPs), cell components (CCs) and molecular functions (MFs) of each gene (40). We also performed Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis to show enrichment for related genes (41). We use GSEA software (vision 4.0.3) to September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 3 Tumor Microenvironment and CD3E in LGG Lu et al. TME-Related Scores Are Related to Survival of LGG Patients To confirm whether the proportion of cells in the TME and tumor purity can affect the survival time of LGG patients, we calculated ImmuneScore, StromalScore, and ESTIMATEScore and generated a Kaplan-Meier survival curve. The Score was positively associated to the higher the proportion of the corresponding component in the TME. The sum of ImmuneScore and StromalScore is ESTIMATEScore, which also reflects tumor purity. Figure 2 shows how the TME scores are related to overall survival. ImmuneScore (P = 0.003), StromalScore (P < 0.001), and ESTIMATEScore (P = 0.006) values were positively correlated with OS. These results indicate that the prognosis of LGG patients can be inferred based on the estimated matrix score and help to develop a personalized treatment plan. RESULTS We performed univariate Cox regression analysis on stromal related DEGs and LGG patient survival to determine which genes are most high risk for LGG patients and which are low risk (Figure 6C). Finally, we combined the main nodes in the PPI diagram and the top 75 genes ranked by P value to analyze them, and obtained 30 intersecting genes. (Figure 6D). These genes are significantly related to the prognosis of LGG. StromalScore (Figures 5A, B). These 223 stromal related DEGs may play a decisive role in the LGG TME. Through GO enrichment and KEGG analyses, we found that the biological functions of these genes are mainly related to immunity (Figures 5C, D). RESULTS To determine the exact changes in the genetic profiles of immune and matrix components in the TME, we used the two packages “limma” (46) and “pheatmap” (47, 48) for analysis, we set the filter conditions to “fdrFilter = 0.05, logFCfilter = 1.5”, by reading the expression input file, deleting the normal sample, reading the score file, according to the score The median value groups the samples, performs difference analysis, and outputs the differences of all genes, and then screens out genes that affect survival. We compared high- and low-scoring samples based on the median value (Figure 4). We obtained 518 DEGs from StromalScore, which contained 461 upregulated genes and 57 downregulated genes (Figure 4A). We also obtained 297 DEGs through ImmuneScore, with 201 upregulated genes and 96 downregulated genes (Figure 4B). Through a Venn diagram, we determined that 199 upregulated genes with high scores and 19 downregulated genes with low scores were contained in both ImmuneScore and As shown in Figure 1, this work was conducted in three stages. To estimate the proportion of TICs and tumor purity in LGG samples, transcriptome RNA-seq data from 516 patients were downloaded from TCGA, after which ESTIMATE and CIBERSORT algorithms were performed. DEGs shared by ImmuneScore and StromalScore were used to construct a PPI network. Significant hub genes in the PPI network were evaluated using univariate Cox regression cross-analysis. Additionally, we selected a qualified dataset from the GEO database and conducted a differential analysis to obtain clinical-related DEGs. Then, any associations between the DEGs and LGG patient survival rates were evaluated and screened. Next, CD3E was identified and validated as the most relevant gene after combining the two datasets of DEGs. Further September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 4 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. FIGURE 1 | Flowchart of this study. TCGA, the Cancer Genome Atlas; GEO, Gene Expression Omnibus; LGG, low-grade glioma. GURE 1 | Flowchart of this study. TCGA, the Cancer Genome Atlas; GEO, Gene Expression Omnibus; LGG, low-grade glioma. interactions between the genes are shown in Figure 6A. We selected the top 30 genes ranked by the number of nodes and plotted them as a bar graph (Figure 6B). Filtering Clinical-Related DEGs to Identify a Target Gene co-expression (lavender line) and 4.80% terms were in co- localization (deep blue line). We then conducted a biological function enrichment analysis of clinical-related DEGs. The results showed that enrichments of biological processes included positive regulation of voltage-gated potassium channel activity, positive regulation of potassium ion transmembrane transporter activity, and regulation of pri- miRNA transcription by RNA polymerase II (pol II) (Figure 7D); enrichments of cellular components included ion glutamatergic synapse, apical plasma membrane, and apical part of cell (Figure 7E); enrichments of molecular functions included oxidoreductase activity, calmodulin binding, and copper ion binding (Figure 7F). Enrichments in KEGG pathway analysis were glioma, tyrosine metabolism, and citrate cycle (Figure 7G). We used the R language package “limma” (46) to screen the genes that affect survival in three GEO sets (GSE107850, GSE60898, GSE26576). We screened 114 clinical-related DEGs (P < 0.001) that were significantly related to survival from a group of 13,299 genes and compared them with the previous stromal related DEGs to obtain seven genes: CD3E, TLR2, CCR5, CXCL9, CXCL10, FCGR2A, and ITGAL (Figure 6E). We mapped the PPI network for these seven genes (Figure 6F). 78.89% of terms were in co-expression (lavender line), 7.65% of terms were shared protein domains (yellow line), 7.11% of terms were in co-localization (deep blue line), and 7.11% of terms were predicted (khaki line). We also performed GO and KEGG pathway analyses on these seven genes, finding that the genes were related to immune diseases and the inflammatory response (Figure 6G). We correlated the 20 most significantly up-regulated genes and the 20 most significantly down-regulated genes with CD3E. As shown in Figure 7H, red represents a positive correlation and green represents a negative correlation. The deeper of the color indicated the greater the relevance. CD3E was positively correlated with LILRB4, UPK1A, and REM1, and negatively correlated with RIT2, OGDHL, and KCNC2 (Figure 7H). Next, in order to reduce system bias and select multiple cohorts with large samples to increase the rigor of the research, we also screened the clinically relevant genes in the GEO database. We selected a suitable data set from the GEO database for clinical analysis (GSE107850, GSE60898, GSE26576), comparing it with the immune-related genes, based on the hazard ratio (HR) value of each gene and the survival-related P value, we targeted CD3E for further study. Filtering Clinical-Related DEGs to Identify a Target Gene Besides, as shown in Figures S1A, B, we identified 866 up- regulated genes and 256 down-regulated genes based on top 25% high (G1) and low (G2) CD3E expression in total 256 LGG patients from TCGA using Limma R package with |LogFC| > 2, P < 0.05. GO and KEGG enrichment could effectively suggest gene functions and associated high-level genome functional information in Figures S1C, F. In addition of this role of signal transduction in T-cell activation and proliferation, CD3E plays an essential role in correct T-cell development, neutrophil activation involved in immune responses, cell adhesion molecules and extracellular matrix organization, thus reshaping suppressive TME and promoting malignant behaviors of LGG. We divided the dataset into high and low expression groups according to the median CD3E expression value and screened using “log fold change = 0.5, and P < 0.05”. A total of 114 related differential genes were obtained. The 15 genes with the most significant up-regulation and the 11 genes with the most significant down-regulation were selected for further analysis (Table S1), which were visualized with a volcano map (Figure 7A) and heat map (Figure 7B). Identification of Key Stromal Related Genes To further study the underlying mechanisms of the abovementioned genes and determine which were most crucial, we generated a PPI network diagram through String. The September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 5 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C FIGURE 2 | Correlation of scores with the survival of patients with LGG. (A) Kaplan-Meier survival analysis for LGG patients grouped into high or low score in ImmuneScore determined by the comparison with the median, P = 0.003. (B) Kaplan–Meier survival curve for StromalScore, p < 0.001. (C) Survival analysis with Kaplan–Meier method for LGG patients grouped by ESTIMATEScore, P = 0.006. C B A B C A FIGURE 2 | Correlation of scores with the survival of patients with LGG. (A) Kaplan-Meier survival analysis for LGG patients grouped into high or low score in ImmuneScore determined by the comparison with the median, P = 0.003. (B) Kaplan–Meier survival curve for StromalScore, p < 0.001. (C) Survival analysis with Kaplan–Meier method for LGG patients grouped by ESTIMATEScore, P = 0.006. CD3E Expression Is Negatively Related to LGG Patient Survival As illustrated in Figure 7C, gene-gene interactions between clinical-related DEGs were analyzed. 95.20% of terms were in CD3E is an epsilon subunit of the T cell antigen receptor. According to the CD3E expression median value, all LGG September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 6 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D E F G H I FIGURE 3 | Correlation of ImmuneScore and StromalScore with clinicopathological staging characteristics. (A, D, G) Distribution of ImmuneScore, StromalScore, and ESTIMATEScore in age. P = 0.6, 0.067, and 0.32. (B, E, H) Distribution of three kinds of scores in gender. P = 0.31, 0.28, 0.28. (C, F, I) Distribution of scores in grade. P < 0.001. C A B C B A F D E E D E D F G H I H I G H FIGURE 3 | Correlation of ImmuneScore and StromalScore with clinicopathological staging characteristics. (A, D, G) Distribution of ImmuneScore, StromalScore, and ESTIMATEScore in age. P = 0.6, 0.067, and 0.32. (B, E, H) Distribution of three kinds of scores in gender. P = 0.31, 0.28, 0.28. (C, F, I) Distribution of scores in grade. P < 0.001. samples were divided into CD3E high and low expression groups. Analysis of the TCGA data (P = 0.000637; Figure 8A) and GEO data (P < 0.001; Figure 8B) suggested that the survival rate of LGG patients with high CD3E expression was lower than those with low CD3E expression. Interestingly, after a literature review and pan-cancer statistical tests (16, 49), we found that CD3E may have an opposite prognostic effect in gliomas than in most other tumors (Figure 8C). Moreover, it is only in the two head tumors of uveal melanoma and LGG that the higher the expression is, the worse the prognosis is (Figure S2). Finally, we studied the difference in CD3E expression between Grade II and Grade III patients in the TCGA cohort. We found that patients with higher grades had higher expression levels of CD3E and worse prognosis in the clinic (Figure 8D). At the same time, we conducted a subgroup analysis of different clinical characteristics on clinical data to eliminate September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 7 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. CD3E Expression Is Negatively Related to LGG Patient Survival A B IGURE 4 | Heatmaps, Venn plots for DEGs. (A) Heatmap for DEGs generated by comparison of the high score group vs. the low score group in ImmuneScore. ow name of heatmap is the gene name, and column name is the ID of samples which not shown in plot. Differentially expressed genes were determined by Wilcoxon rank sum test with q = 0.05 and fold-change > 1 after log2 transformation as the significance threshold. (B) Heatmap for DEGs in StromalScore, similar with (A). A B C D IGURE 5 | Up-regulated and down-regulated and enrichment analysis of GO and KEGG. (A, B) Venn plots showing common up-regulated and down-regulated EG h d b I S d St lS (C D) GO d KEGG i h t l i f DEG A B FIGURE 4 | Heatmaps, Venn plots for DEGs. (A) Heatmap for DEGs generated by comparison of the high score group vs. the low score group in ImmuneScore. Row name of heatmap is the gene name, and column name is the ID of samples which not shown in plot. Differentially expressed genes were determined by Wilcoxon rank sum test with q = 0.05 and fold-change > 1 after log2 transformation as the significance threshold. (B) Heatmap for DEGs in StromalScore, similar with (A). A B A FIGURE 4 | Heatmaps, Venn plots for DEGs. (A) Heatmap for DEGs generated by comparison of the high score group vs. the low score group in ImmuneScore. Row name of heatmap is the gene name, and column name is the ID of samples which not shown in plot. Differentially expressed genes were determined by Wilcoxon rank sum test with q = 0.05 and fold-change > 1 after log2 transformation as the significance threshold. (B) Heatmap for DEGs in StromalScore, similar with (A). A B C D FIGURE 5 | Up-regulated and down-regulated and enrichment analysis of GO and KEGG. (A, B) Venn plots showing common up-regulated and down-regulated DEGs shared by ImmuneScore and StromalScore. (C, D) GO and KEGG enrichment analysis for DEGs. A D C FIGURE 5 | Up-regulated and down-regulated and enrichment analysis of GO and KEGG. (A, B) Venn plots showing common up-regulated and down-regulated DEGs shared by ImmuneScore and StromalScore. (C, D) GO and KEGG enrichment analysis for DEGs. CD3E Expression Is Negatively Related to LGG Patient Survival September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 8 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D F G E FIGURE 6 | Protein–protein interaction network and univariate COX. (A) Interaction network constructed with String. (B) The top 30 genes ordered by the number of nodes. (C) Univariate COX regression analysis with DEGs was done, listing the top significant factors with P < 0.001. (D) Venn plot showing the common factors shared by nodes in PPI and top significant factors in univariate COX. (E) Venn plot showing the common factors shared by nodes in Stromal related DEGs and Clinical-related DEGs. (F) Interaction network constructed with 7 genes. (G) GO and KEGG pathway analyses on 7 genes. B A A C D E C D E D E C D E D E C C D E E F G G FIGURE 6 | Protein–protein interaction network and univariate COX. (A) Interaction network constructed with String. (B) The top 30 genes ordered by the number of nodes. (C) Univariate COX regression analysis with DEGs was done, listing the top significant factors with P < 0.001. (D) Venn plot showing the common factors shared by nodes in PPI and top significant factors in univariate COX. (E) Venn plot showing the common factors shared by nodes in Stromal related DEGs and Clinical-related DEGs. (F) Interaction network constructed with 7 genes. (G) GO and KEGG pathway analyses on 7 genes. expression was found in astrocytoma samples (n = 194) compared with oligoastrocytoma samples (n = 130, P = 6.43 × 10-4) or oligodendroglioma samples (n = 130, P = 6.4187 × 10-4) (Figure S4). clinical bias. We found that the effect of CD3E is still the same in LGG patients with different clinical characteristics (Figure S3). Then, we explored differential CD3E expression based on the histological subtypes of LGG. Significantly elevated CD3E September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 9 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D E F G H E 7 | Correlation Analyses of Clinical-Related DEGs (A) The volcano map of Clinical-Related DEGs. (B) The heat map of Clinical-Related DEGs. (C) PPI of Related DEGs. co-expression (lavender line), co-localization (deep blue line). (D) The enrichments of biological processes of DEGs. CD3E Expression Is Negatively Related to LGG Patient Survival (E) The enrichments of components of DEGs. (F) The enrichments of molecular functions of DEGs. (G) The enrichments in KEGG pathway of DEGs. (H) The 20 most significantly ated genes and the 20 most significantly down-regulated genes with CD3E. Red color was for positive correlation, and green color represented a negative on. The deeper the color indicated the greater the relevance. C D F D E F F E G G H H H FIGURE 7 | Correlation Analyses of Clinical-Related DEGs (A) The volcano map of Clinical-Related DEGs. (B) The heat map of Clinical-Related DEGs. (C) PPI of Clinical-Related DEGs. co-expression (lavender line), co-localization (deep blue line). (D) The enrichments of biological processes of DEGs. (E) The enrichments of cellular components of DEGs. (F) The enrichments of molecular functions of DEGs. (G) The enrichments in KEGG pathway of DEGs. (H) The 20 most significantly up-regulated genes and the 20 most significantly down-regulated genes with CD3E. Red color was for positive correlation, and green color represented a negative correlation. The deeper the color indicated the greater the relevance. September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 10 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D IGURE 8 | Relationship between CD3E expression and survival of LGG patients (A) Relationship between CD3E expression and survival of LGG patients in the CGA database (P = 0.000637). (B) Relationship between CD3E expression and survival of LGG patients in the GSE database (P < 0.001). (C) CD3E might ave completely opposite prognostic effect of CD3E in gliomas than that of most other tumors. (D) The relationship between CD3E expression and survival of GG patients. B A B A C D D C FIGURE 8 | Relationship between CD3E expression and survival of LGG patients (A) Relationship between CD3E expression and survival of LGG patients in the TCGA database (P = 0.000637). (B) Relationship between CD3E expression and survival of LGG patients in the GSE database (P < 0.001). (C) CD3E might have completely opposite prognostic effect of CD3E in gliomas than that of most other tumors. (D) The relationship between CD3E expression and survival of LGG patients Correlation of CD3E With the Proportion of TICs Correlation of CD3E With the Proportion of TICs correlated with CD3E expression, including M0 macrophages, M1 macrophages, resting mast cells, resting NK cells, CD4+ memory activated T cells, CD8+ T cells, and regulatory T cells. Three kinds of TICs were negatively correlated with CD3E expression, including eosinophils, monocytes, and activated NK cells. Then, we calculated the relationship between the abundance of tumor infiltrating lymphocytes and the expression, copy number, methylation, or mutation of CD3E in LGG (Figure S5). These results suggest that CD3E is related to the immune activity of the TME, thereby affecting the tumor purity of LGG. Correlation of CD3E With the Proportion of TICs We used the CIBERSORT algorithm to analyze the proportion of TICs for 22 immune cells in LGG to further study the correlation between CD3E and the immune microenvironment of LGG. (Figures 9A, B). Considering that CD3E expression is negatively correlated with the survival rate of LGG patients, we performed GSEA analysis on the high expression group. We found that the genes in the CD3E high expression group mainly participated in stromal related activities, such as the B cell receptor signaling pathway, chemokine signaling pathway, and T cell receiver signaling pathway (Figure 9C). Furthermore, CD3E was positively related to glioma and immune cell response. These results suggest that CD3E may be a potential indicator of TME status for LGG. Next, we aimed to investigate predictive role of CD3E expression in predicting responses to immune checkpoint inhibitors of LGG using Tumor Immune Dysfunction and Exclusion (TIDE) algorithm. Interestingly, we found that TIDE score was significantly higher in CD3Ehigh group compared with CD3Elow group in 255 LGG patients (P = 0.001), suggesting poor We found that the expression of CD3E is related to 10 groups of TICs in LGG (Figure 10). Seven kinds of TICs were positively September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 11 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C FIGURE 9 | TIC profile in tumor samples and correlation analysis. (A) Barplot showing the proportion of 22 kinds of TICs in LGG tumor samples. Column names of plot were sample ID. (B) Heatmap showing the correlation between 22 kinds of TICs and numeric in each tiny box indicating the p value of correlation between two kinds of cells. Clinicopathological Features Related to CD3E Expression prognosis of LGG patients with high CD3E expression and the poor tolerance of immune checkpoint inhibitor therapy (Figure S6). To verify CD3E expression in LGG, we performed immunohistochemistry (IHC) (Figures 12A, B). The scatter plot of the IHC scores revealed that CD3E expression increased in LGG tissues in the AHYMUN cohort (P < 0.01). In Table 1, we show that higher CD3E expression correlates with patient age (P = 0.027), grade (P < 0.001), microvascular invasion (P = 0.009), history of epilepsy (P < 0.001), and Karnofsky score (P = 0.002). We believe this indicates that the higher the expression of CD3E in patients, the worse the prognosis. Correlation of CD3E With the Proportion of TICs The shade of each tiny color box represented corresponding correlation value between two cells, and Pearson coefficient was used for significance test. (C) GSEA for samples with high CD3E expression. Lu et al. Tumor Microenvironment and CD3E in LGG A B C B FIGURE 9 | TIC profile in tumor samples and correlation analysis. (A) Barplot showing the proportion of 22 kinds of TICs in LGG tumor samples. Column names of plot were sample ID. (B) Heatmap showing the correlation between 22 kinds of TICs and numeric in each tiny box indicating the p value of correlation between two kinds of cells. The shade of each tiny color box represented corresponding correlation value between two cells, and Pearson coefficient was used for significance test. (C) GSEA for samples with high CD3E expression. Single Cell Analysis of CD3E in Brain Tumors Tofurtherexplorethe mechanismbywhichCD3Epromotestumor immune evasion in brain tissue and LGG, we performed complex bioinformatics work including functional enrichment and GSEA analyses. The results suggested that CD3E is more likely to participate in T cell-regulated immune deficiency as one of its important roles in the formation of the TCR. Next, we enrolled six glioma single-cell sequencing datasets from GEO analysis (GSE131928 10X, GSE131928 Smartseq2, GSE135437, GSE139448, GSE141982, and GSE148842), which suggested significantly elevated CD3E expression in CD8+ T cells, especially the exhaustive T cells. Therefore, we hypothesize that CD3E possibly contributes to an immune evasion mechanism in brain tumors by leading to T cell dysfunction (Figure 11). Cox Regression Analysis We used univariate Cox regression analysis to demonstrate the relationship between CD3E and AHYMUN patients and found that CD3E is not significantly related to age and gender (Figure 12C). In the multivariate model, we also found that patients in the high expression group had worse OS (HR = 3.22; P = 0.001). Moreover, in the AHNTU cohort, the microvascular September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 12 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. B A B C FIGURE 10 | Correlation of TICs proportion with CD3E expression. (A) Violin plot showed the ratio differentiation of 22 kinds of immune cells between LGG tumor samples with low or high CD3E expression relative to the median of CD3E expression level, and Wilcoxon rank sum was used for the significance test. (B) Venn plot displayed ten kinds of TICs correlated with CD3E expression codetermined by difference and correlation tests displayed in violin and scatter plots, respectively. (C) Scatter plot showed the correlation of 14 kinds of TICs proportion with the CD3E expression (P < 0.05). The red line in each plot was fitted linear model indicating the proportion tropism of the immune cell along with CD3E expression, and Pearson coefficient was used for the correlation test. A B C B C FIGURE 10 | Correlation of TICs proportion with CD3E expression. (A) Violin plot showed the ratio differentiation of 22 kinds of immune cells between LGG tumor samples with low or high CD3E expression relative to the median of CD3E expression level, and Wilcoxon rank sum was used for the significance test. (B) Venn plot displayed ten kinds of TICs correlated with CD3E expression codetermined by difference and correlation tests displayed in violin and scatter plots, respectively. (C) Scatter plot showed the correlation of 14 kinds of TICs proportion with the CD3E expression (P < 0.05). The red line in each plot was fitted linear model indicating the proportion tropism of the immune cell along with CD3E expression, and Pearson coefficient was used for the correlation test. invasion (HR = 1.52; P = 0.024), the presence of capsular infiltration (HR = 1.63; P = 0.016), and the Karnofsky scores (ref < 80) (HR = 1.46; P = 0.023) were associated with low OS (Table 2). DISCUSSION Inthisstudy,wefirstscreenedtheimmunegenesrelatedtotheTME in LGG patients from the TCGA database. Next, we screened genes related to the prognosis of LGG patients from GEO. After combining the above genes, we determined CD3E to be the main target gene. Then, we conducted a series of bioinformatics analyses and verified the research results at our own center. We found that CD3E may be an indicator gene of the TME status of LGG patients and, by affecting the TME of LGG, can thereby change the tumor purity and affect the prognosis of patients. Cox Regression Analysis ability of N9 and N33 cell lines was significantly reduced compared with normal genitive control group (Figure 13E). Taken together, down-regulated CD3E expression significantly restrained LGG cells proliferation and invasion capacities, thus may reducing the malignant biological behaviors and aggressive progression of LGG. We found that the patient’s gender and epilepsy history were not related to DFS (Figure 12D). We found through Cox analysis that the high expression of the CD3E gene caused a significant decrease in OS (HR = 4.33; P < 0.001) (Table S1). Grade, capsular infiltration, microvascular invasion, and Karnofsky scores were related to OS (P < 0.05). As seen in Figures 12E, F, the higher the CD3E expression level, the lower the OS and DFS of LGG patients. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells To explore biological malignancy of CD3E in LGG, we used siRNA methods to restrain the expression of CD3E. Western blot showed that CD3E protein expression was markedly decreased after siRNA-CD3E transfection, compared with the negative control group (Figures 13A, B). CCK8 assay showed that the decreased CD3E expression significantly inhibited cell proliferation in N9 and N33 cells (Figures 13C–E). Still, we found that when expression of CD3E was inhibited, the invasion The combination of the cancer cell genotype, its gene expression pattern, and the influence of the TME determines the tumor’s adaptability, evolution, and resistance to treatment (50). In recent years, studies using TCGA and GSE have mapped the genetic picture and overall expression status of numerous September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 13 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D E F FIGURE 11 | Single cell analysis of CD3E in LGG. Six single cell sequencing data sets from geo analysis were used to analyze the expression of cd3e in CD8 + T cells. (A) We quantitatively calculated the positioning and binding of CD3E on various immune cells across the dataset using a heatmap. (B–F) Five single-cell RNA- seq datasets were enrolled to determine the location of CD3E in different cell. A B B B A D D C C C F E F F E E FIGURE 11 | Single cell analysis of CD3E in LGG. Six single cell sequencing data sets from geo analysis were used to analyze the expression of cd3e in CD8 + T cells. (A) We quantitatively calculated the positioning and binding of CD3E on various immune cells across the dataset using a heatmap. (B–F) Five single-cell RNA- seq datasets were enrolled to determine the location of CD3E in different cell. tumors, identified driver mutations, and defined tumor subtypes based on specific transcription profiles (51, 52). samples. The evaluation algorithm proved to be a robust tumor fine prediction algorithm. Previous studies have shown that low tumor purity is associated with poor prognosis in colon cancer, gastric cancer and glioma (27, 61). However, there are few studies on specific genes that affect tumor purity and thus affect LGG. Our research shows that the purity of tumors affected by CD3E plays an important role in predicting the prognosis and genomic status of LGG. Frontiers in Oncology | www.frontiersin.org Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells The higher the expression of CD3E, the lower the purity of LGG tumors, which is associated with enhanced immune escape and poor prognosis, suggesting that patients with low-purity LGG may benefit more from immunotherapy. In order to better understand TME and make better clinical decisions, further research on tumor purity is needed. LGG is a common brain tumor, and the prognosis of patients withWHOgradeIIandIIIisnormallypoor(53).However,surgery, radiation therapy, or chemotherapy (usually using temozolomide) oftencannotimprovetheprognosisandsurvivalofpatients(54,55). The reasons for the lack of progress include the growth of invasive tumors in basic organs, which limits the utility of local therapies. Additionally, the protection of tumor cells by the blood-brain barrier limits the drug concentration, while the blood-tumor barrier protects tumor cells (56). When pursuing immune-based glioblastoma treatment methods, the unique immune environment of the central nervous system needs to be considered (57–59). Therefore, we need to study novel LGG immunotherapy candidates. Here, we began with the transcriptional analysis of LGG data in TCGA and found that the decreased expression of CD3E is closely related to poor prognosis of patients. Therefore, CD3E is a potential prognostic indicator and treatment target in LGG patients. CD3E encodes the polypeptide CD3-ϵ, which together with the CD3-g, -d and -ZETA and T-cell receptor a/b and g/d T cell receptor heterodimer -CD3 complex. The complex plays an important role in coupling antigen recognition to several intracellular signal transduction pathways, so defects in CD3E can lead to immunodeficiency (62). CD3E role as a biological component that is functionally important for T cell receptor signaling for proper immunity. This is why the molecule appeared to be increased and as they proposed that would Yoshihara et al. developed an algorithm for evaluating tumor purity (60), using gene expression data to evaluate the presence of antigen cells and the penetration of immune cells in tumor September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 14 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. A B C D E F FIGURE 12 | The relationship between CD3E gene and LGG prognosis was further verified. (A) IHC on collected LGG tissue. (B) The scatter plot of the IHC scores (P < 0.01). (C, D) Forest plots were used to visualize the univariate Cox regression analysis of OS and DFS in the AHYMUM cohorts. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells TCR-CD3 complex assembly is initiated by the formation of two heterodimers: CD3D/CD3E and CD3G/CD3E. relate to a poorer prognosis. In fact, the more T cells in the tissue would mean that T cell immunity occurs there to act against tumor cells as ones would expect. However, there are many T cell subsets most of which have CD3E as the TCR/CD3 complex component, yet they perform different function ranging from protection (e.g., CD4 and CD8 T cells against viruses and tumors), autoimmune (self-reactive T cells), to those that suppress other T cells (e.g., regulatory T cells). CD3E is a part of the TCR-CD3 complex on the surface of T lymphocytes, and its basic immune function plays a vital role in the adaptive immune response. When antigen-presenting cells activate T cell receptors, TCR-mediated signals are transmitted across the cell membrane through the CD3 chain CD3D, CD3E, CD3G, and CD3Z, thereby activating downstream signaling pathways. In addition to the role of signal transduction in T cell activation, CD3E also plays a vital role in correct T cell development. The TCR-CD3 complex assembly is initiated by forming two heterodimers CD3D/CD3E and CD3G/CD3E. It also participates in the internalization of the TCR-CD3 complex and the down-regulation of the cell surface through the endocytosis sequence present in the cytoplasmic region of CD3E (49, 63). CD3E also participates in proper T cell development. TCR-CD3 complex assembly is initiated by the formation of two heterodimers: CD3D/CD3E and CD3G/CD3E. In LGG patients, the higher the expression of CD3E signified the worse the patient’s survival. It may be attributed to immune cells with high CD3E expression promoting anti-tumor immunity, except regulatory T cells. Similarly, CD3E acts as a T cell receptor. Its high expression in many cancers indicates better clinical results (longer survival), with the lone exception of LGG (65). This may be related to the cause of LGG and the immune environment of the brain, or it may be due to the interconnection between isocitrate dehydrogenase and the TME (66–68). In CD3E knockdown experiments, we found down- regulated CD3E expression significantly restrained LGG cells proliferation and invasion capacities, thereby further reducing the malignant biological behaviors and aggressive progression of LGG, which may be closely related to the functional involvement of CD3E in TME of LGG. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells (E, F) Survival curves showed that LGG patients with elevated CD3E expression levels in the AHYMUN cohort showed poorer OS (P = 0.023) and poorer DFS (P < 0.001). A B C D A C D B D C E F E F E FIGURE 12 | The relationship between CD3E gene and LGG prognosis was further verified. (A) IHC on collected LGG tissue. (B) The scatter plot of the IHC scores (P < 0.01). (C, D) Forest plots were used to visualize the univariate Cox regression analysis of OS and DFS in the AHYMUM cohorts. (E, F) Survival curves showed that LGG patients with elevated CD3E expression levels in the AHYMUN cohort showed poorer OS (P = 0.023) and poorer DFS (P < 0.001). Additionally, CD3E participates in the internalization of TCR- CD3 complexes and cell surface down-regulation by endocytic sequences present in the cytoplasmic region of CD3E (49, 63, 64). The relationship between the abundance of tumor infiltrating lymphocytes and the expression, copy number, methylation, or mutation of CD3E in LGG is shown in Figure S1. relate to a poorer prognosis. In fact, the more T cells in the tissue would mean that T cell immunity occurs there to act against tumor cells as ones would expect. However, there are many T cell subsets most of which have CD3E as the TCR/CD3 complex component, yet they perform different function ranging from protection (e.g., CD4 and CD8 T cells against viruses and tumors), autoimmune (self-reactive T cells), to those that suppress other T cells (e.g., regulatory T cells). CD3E is a part of the TCR-CD3 complex on the surface of T lymphocytes, and its basic immune function plays a vital role in the adaptive immune response. When antigen-presenting cells activate T cell receptors, TCR-mediated signals are transmitted across the cell membrane through the CD3 chain CD3D, CD3E, CD3G, and CD3Z, thereby activating downstream signaling pathways. In addition to the role of signal transduction in T cell activation, CD3E also plays a vital role in correct T cell development. The TCR-CD3 complex assembly is initiated by forming two heterodimers CD3D/CD3E and CD3G/CD3E. It also participates in the internalization of the TCR-CD3 complex and the down-regulation of the cell surface through the endocytosis sequence present in the cytoplasmic region of CD3E (49, 63). CD3E also participates in proper T cell development. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells Studies have shown that combining CD3E antibodies with antibodies that bind to mutant epidermal growth factor receptor variant III can effectively treat mice with gliomas (69). Therefore, CD3E may play a dual role in tumors, September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 15 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. TABLE 2 | Multivariate Cox regression analysis of DFS and OS in AHYMUM cohorts. Covariates OS DFS HR 95% CI P value HR 95% CI P value Grade (ref. G2) 1.97 2.25-3.68 0.043 2.31 1.94-4.02 0.037 Microvascular invasion (ref. Absent) 1.52 1.61-2.54 0.024 1.98 1.73-3.64 0.031 Capsular invasion (ref. Absent) 1.63 2.17-3.21 0.016 1.54 2.31-3.16 0.017 Karnofsky score (ref. >80) 1.46 2.31-3.27 0.023 1.56 1.66-2.64 0.044 CD3E expression (ref. low) 3.32 2.48-9.91 0.001 4.33 2.64-12.21 <0.001 DFS, disease-free survival; OS, overall survival. P value less than 0.05 was considered as statistical significance and marked in bold. TABLE 1 | Clinicopathological characteristics in relation to CD3E expression level in AHYMUM cohort. Characteristics AHYMUN cohort CD3E expression c2 P (N=100) Low IHC score High IHC score (N = 50) (N = 50) N (%) Age 4.889 0.027 <60 years 55 (0.55) 33 (0.60) 22 (0.40) ≥60 years 45 (0.45) 17 (0.38) 28 (0.72) Gender 0.271 0.603 Male 82 (0.82) 40 (0.49) 42 (0.51) Female 18 (0.18) 10 (0.56) 8 (0.44) Grade 14.924 <0.001 G2 69 (0.69) 39 (0.57) 30 (0.43) G3 31 (0.31) 11 (0.35) 20 (0.65) Seizure history 12.148 <0.001 yes 61 (0.61) 39 (0.64) 22 (0.36) no 39 (0.39) 11 (0.28) 28 (0.72) Microvascular invasion 6.828 0.009 Absent 55 (0.55) 34 (0.62) 21 (0.38) Present 45 (0.45) 16 (0.36) 29 (0.64) Capsular invasion 1.961 0.161 Absent 51 (0.51) 29 (0.57) 22 (0.43) Present 49 (0.49) 21 (0.43) 28 (0.57) Karnofsky score 9.180 0.002 ≥80 61 (0.61) 36 (0.59) 21 (0.41) <80 39 (0.39) 14 (0.36) 29 (0.64) IHC, immunohistochemistry; AHYMUN, Affiliated Hospital of YouJiang Medical University for Nationalities. P value less than 0.05 was considered as statistical significance and marked in bold. TABLE 1 | Clinicopathological characteristics in relation to CD3E expression level in AHYMUM cohort. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells Characteristics AHYMUN cohort CD3E expression c2 P (N=100) Low IHC score High IHC score (N = 50) (N = 50) N (%) Age 4.889 0.027 <60 years 55 (0.55) 33 (0.60) 22 (0.40) ≥60 years 45 (0.45) 17 (0.38) 28 (0.72) Gender 0.271 0.603 Male 82 (0.82) 40 (0.49) 42 (0.51) Female 18 (0.18) 10 (0.56) 8 (0.44) Grade 14.924 <0.001 G2 69 (0.69) 39 (0.57) 30 (0.43) G3 31 (0.31) 11 (0.35) 20 (0.65) Seizure history 12.148 <0.001 yes 61 (0.61) 39 (0.64) 22 (0.36) no 39 (0.39) 11 (0.28) 28 (0.72) Microvascular invasion 6.828 0.009 Absent 55 (0.55) 34 (0.62) 21 (0.38) Present 45 (0.45) 16 (0.36) 29 (0.64) Capsular invasion 1.961 0.161 Absent 51 (0.51) 29 (0.57) 22 (0.43) Present 49 (0.49) 21 (0.43) 28 (0.57) Karnofsky score 9.180 0.002 ≥80 61 (0.61) 36 (0.59) 21 (0.41) <80 39 (0.39) 14 (0.36) 29 (0.64) IHC, immunohistochemistry; AHYMUN, Affiliated Hospital of YouJiang Medical University for Nationalities. P value less than 0.05 was considered as statistical significance and marked in bold. TABLE 1 | Clinicopathological characteristics in relation to CD3E expression level in AHYMUM cohort. TABLE 2 | Multivariate Cox regression analysis of DFS and OS in AHYMUM cohorts. Covariates OS DFS HR 95% CI P value HR 95% CI P value Grade (ref. G2) 1.97 2.25-3.68 0.043 2.31 1.94-4.02 0.037 Microvascular invasion (ref. Absent) 1.52 1.61-2.54 0.024 1.98 1.73-3.64 0.031 Capsular invasion (ref. Absent) 1.63 2.17-3.21 0.016 1.54 2.31-3.16 0.017 Karnofsky score (ref. >80) 1.46 2.31-3.27 0.023 1.56 1.66-2.64 0.044 CD3E expression (ref. low) 3.32 2.48-9.91 0.001 4.33 2.64-12.21 <0.001 DFS, disease-free survival; OS, overall survival. P value less than 0.05 was considered as statistical significance and marked in bold. TABLE 2 | Multivariate Cox regression analysis of DFS and OS in AHYMUM cohorts. for OS and DFS of LGG. CD3E normally plays an important role in the formation of the TCR and participates in multiple signaling pathways in T cell-regulated immune deficiency. After a literature review and pan-cancer statistical tests, we found that CD3E may have a completely opposite prognostic effect in gliomas than in most other tumors (Figure 8C), except for Uveal Melanoma (Figure S2) and LGG. In our research, we found that CD3E is highly expressed in T cells. Through bioinformatics and immunohistochemistry studies, we found that CD3E is also highly expressed in LGG. Frontiers in Oncology | www.frontiersin.org Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells (C, D) CCK8 assay showed that the decreased CD3E expression significantly inhibited cell proliferation in N9 N33 cells. (E) Transwell assay showed that when expression of CD3E was inhibited, the invasion ability of N9 and N33 cell lines was significantly reduced. E E FIGURE 13 | Down-regulation of CD3E inhibits cell proliferation and invasion abilities in LGG cells. (A, B) Western blot showed that CD3E protein expression was markedly decreased after siRNA-CD3E transfection. (C, D) CCK8 assay showed that the decreased CD3E expression significantly inhibited cell proliferation in N9 and N33 cells. (E) Transwell assay showed that when expression of CD3E was inhibited, the invasion ability of N9 and N33 cell lines was significantly reduced. cell-mediated anti-tumor immune evasion. The immune system is usually limited to the brain. The activation of various immune cells in LGG makes TME different from other solid tumors. Therefore, we hypothesized that CD3E, as one of the main regulatory elements of the LGG immune microenvironment, may play an important role in LGG immune evasion and the shaping of the immunosuppressive microenvironment. In the previous bioinformatics analysis, we found through single cell analysis of brain tumors that the expression of CD3E is particularly prominent in CD8+ T cells. Therefore, we hypothesized that CD3E may promote the immune evasion mechanism of brain tumors by causing T cell dysfunction in the immune cell population. In subsequent experiments, we found that the higher the expression of CD3E in tumor cells, the stronger the invasion ability of LGG. We know that the cells and molecules in TME are in a process of dynamic changes at any time. Stromal cells and immune cells jointly promote the proliferation, apoptosis, metastasis and immune escape of cancer cells (70); while tumor invasion and infiltration are often time- sensitive, influencing TME all the time. Therefore, we made an audacious hypothesis that the reason why CD3E can be used as an independent molecular marker to test the prognosis of LGG patients is because it affects both immune cells and tumor cells. It can be said that in LGG, CD3E is the key gene for tumor cells and TME to influence each other, and it is the bridge between the two. Further studies would focus on the underlying mechanism of CD3E in immune microenvironment of LGG. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells Therefore, we studied the expression of CD3E in pan-cancer cell lines (Figure S7), and we found that the expression of CD3E in all tumors is not the highest in gliomas. However, in the above studies, we found that the higher the expression of CD3E, the worse the prognosis of LGG, which is completely opposite to tumors such as liver cancer and breast cancer. We considered that CD3E plays an active role in most TMEs and passed It binds to T cell surface receptors in the form of a complex to regulate T either promoting survival or inducing apoptosis. In our Western blot and CCK8 experiments, we found that the higher the expression of CD3E represented the higher the invasion of tumor cells. This is one of the reasons why the higher the expression of CD3E, the worse the survival of LGG patients. In addition, in the TME of glioma, the proliferation of malignant cells is enhanced, the pool of undifferentiated glioma cells increases, and macrophage expression exceeds microglial expression (65–68). Still, it is an interesting question that CD3E may have a completely opposite prognostic effect in gliomas than that in most other tumors. In this study, CD3E was selected because it had the most significant prognostic value (HR=1.552, P<0.001) of LGG. DEGs screened according to CD3E expression were mainly involved in stromal related activities. Additionally, significantly increased CD3E expression was found in 100 LGG samples from a validation cohort compared with adjacent normal brain tissues. High CD3E expression could serve as an independent prognostic indicator September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 16 Tumor Microenvironment and CD3E in LGG Lu et al. A C D B E FIGURE 13 | Down-regulation of CD3E inhibits cell proliferation and invasion abilities in LGG cells. (A, B) Western blot showed that CD3E protein expression was markedly decreased after siRNA-CD3E transfection. (C, D) CCK8 assay showed that the decreased CD3E expression significantly inhibited cell proliferation in N9 and N33 cells. (E) Transwell assay showed that when expression of CD3E was inhibited, the invasion ability of N9 and N33 cell lines was significantly reduced. A C D B C C D D B D D E RE 13 | Down-regulation of CD3E inhibits cell proliferation and invasion abilities in LGG cells. (A, B) Western blot showed that CD3E protein expression was edly decreased after siRNA-CD3E transfection. Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells Our GSEA results also suggested that high CD3E expression enriched stromal related signaling pathways, such as B/T cell receptor signaling pathways and chemokine signaling pathways. These results indicate that CD3E may be involved in the transition of the TME from immune-based to metabolic-based. An increasing number of studies show that CD3E is related to tumor treatment (71–73). Our research also found that the balance between tumor pathways, sugar metabolism, and lactic acid formation can affect the immune status of LGG. Therefore, we suspect that in the development of LGG, the up-regulation of CD3E promotes the decline of tumor purity. Simultaneously, the transition of the TME from immune-based to metabolic-based further promotes the deterioration of LGG. September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 17 Tumor Microenvironment and CD3E in LGG Lu et al. Lu et al. sample size is also small, and they are all Asian patients. We will further expand the samples in the next research. Additionally, we will conduct research on LGG patients in Europe, Africa and other places. The second is that this experiment lacks research on the expression of CD3E in different cell populations in tumor samples. In the next work, we will focus on this direction. The abovementioned studies confirmed that CD3E is not only a potential prognostic factor for LGG patients, but also a driving factor for the TME to transform from an immune state to a metabolic state. In the next study, we intend to study the expression of CD3E in different cell populations in LGG to clarify the cell types that express CD3E, as well as how the expression of CD3E in different cell populations affects TME. We also found that positive regulation of voltage-gated potassium channel activity is related to LGG. MicroRNAs (miRNAs) can reportedly promote the development of invasive nonfunctional pituitary adenomas (74, 75). Current knowledge suggests that voltage-gated potassium channels play a fundamental role in the generation and transmission of action potential (76), but their role in tumors has not been deeply studied. Whether genes can affect the tumor immune microenvironment through action potential is an area of further research. We found that positive regulation of potassium ion transmembrane transporter activity is related to LGG as well, so we can confirm that potassium ions play an important role in LGG. CONCLUSION In conclusion, tumor purity has a considerable impact on clinical, genomic and biological status of LGG. CD3E, novel membrane immune biomarker deeply affecting tumor purity, may help to evaluate the prognosis and develop individual immunotherapy strategies for LGG patients. Evaluating the ratio of different tumor purity and CD3E expression may provide novel insights into the complex structure of the LGG microenvironment and targeted drug development. DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/Supplementary Material. Further inquiries can be directed to the corresponding authors. ETHICS STATEMENT All of the study designs and test procedures were performed in accordance with the Helsinki Declaration II. The Ethics approval and participation consent of this study was approved and agreed by the ethics committee of Affiliated Hospital of Youjiang Medical College for Nationalities (Baise, Guangxi province, China). Down-Regulation of CD3E Inhibits Cell Proliferation and Invasion Abilities in N9 and N33 Cells Previous studies have found that DNA methylation promotes the invasion and development of osteosarcoma through potassium ion transmembrane transporter activity (77). Perhaps DNA methylation is associated with ion channels and the immune microenvironment, and CD3E is a bridge between the three. There are many studies on the regulation of miRNA transcription by RNA pol II and glioma. Some studies have found that overexpression of EGR-1 may participate in the recruitment of RNA pol II to the GDNF promoter in a non- binding manner, and thus is involved in the regulation of GDNF transcription in glioma cells. This regulation depends on histone hyperacetylation of the GDNF promoter (78). Whether CD3E is related to this will be the focus of future investigations. Some studies have found that the ion glutamatergic synapse is associated with medulloblastoma in children (78, 79), while miR-375 also affects the occurrence and development of gastric cancer (80). Therefore, we speculate that CD3E and miRNAs may affect the invasion of glioma through the ion glutamate synapse. Some scientists have found that rotenone sensitive NADH ubiquinone oxidoreductase is a key regulatory step in controlling oxidative phosphorylation during the growth period in rat glioma cells (81). Based on the abovementioned bioinformatics analyses of CD3E-related core genes in LGG, we found that CD3E may be a core gene that can affect the immune microenvironment and tumor purity of LGG in combination with miRNAs, cell respiration, ion channels, and DNA methylation. The role of CD3E in brain tumors is completely different from that of extracranial tumors. This may be because CD3E, as a core gene, regulates the tumor immune microenvironment in a completely different manner than that of extracranial tumors. However, malignant behavior of CD3E in progression of glioma cell was not elucidated in this study. In follow-up research, we could devote ourselves to exploring the biological malignant function of CD3E and its regulatory mechanism on the tumor immune microenvironment in in vitro cell lines, in vivo animals, and large-scale multicenter LGG patients. Overall, we used the ESTIMATE algorithm to determine the TME related genes in LGG by analyzing LGG samples in Frontiers in Oncology | www.frontiersin.org REFERENCES 11. Liu WR, Li CY, Xu WH, Liu XJ, Tang HD, Huang HN. Genome-Wide Analyses of the Prognosis-Related mRNA Alternative Splicing Landscape and Novel Splicing Factors Based on Large-Scale Low Grade Glioma Cohort. Aging (Albany NY) (2020) 12(13):13684–700. doi: 10.18632/aging.103491 1. Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA, et al. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. Cell (2016) 164(3):550–63. doi: 10.1016/ j.cell.2015.12.028 12. Zheng J, Xu W, Liu W, Tang H, Lu J, Yu K, et al. Traditional Chinese Medicine Bu-Shen-Jian-Pi-Fang Attenuates Glycolysis and Immune Escape in Clear Cell Renal Cell Carcinoma: Results Based on Network Pharmacology. Biosci Rep (2021) 41(6). doi: 10.1042/BSR20204421 j 2. Davis ME. Glioblastoma: Overview of Disease and Treatment. Clin J Oncol Nurs (2016) 20(5 Suppl):S2–8. doi: 10.1188/16.CJON.S1.2-8 3. Schwartzbaum JA, Fisher JL, Aldape KD, Wrensch M. Epidemiology and Molecular Pathology of Glioma. Nat Clin Pract Neurol (2006) 2(9):494–503; quiz 1 p following 516. doi: 10.1038/ncpneuro0289 13. Huang S, Wang Y, Zhou Z, Yu Q, Yu Y, Yang Y, et al. Distribution Atlas of COVID-19 Pneumonia on Computed Tomography: A Deep Learning Based Description. Phenomics (2021) 1(2):62–72. doi: 10.1007/s43657-021-00011-4 4. Diwanji TP, Engelman A, Snider JW, Mohindra P. Epidemiology, Diagnosis, and Optimal Management of Glioma in Adolescents and Young Adults. Adolesc Health Med Ther (2017) 8:99–113. doi: 10.2147/AHMT.S53391 14. Li Y, Ma Y, Wang K, Zhang M, Wang Y, Liu X, et al. Using Composite Phenotypes to Reveal Hidden Physiological Heterogeneity in High-Altitude Acclimatization in a Chinese Han Longitudinal Cohort. Phenomics (2021) 1 (1):3–14. doi: 10.1007/s43657-020-00005-8 5. Louis DN, Perry A, Reifenberger G, von Deimling A, Figarella-Branger D, Cavenee WK, et al. The 2016 World Health Organization Classification of Tumors of the Central Nervous System: A Summary. Acta Neuropathol (2016) 131(6):803–20. doi: 10.1007/s00401-016-1545-1 15. Qiu Y, Liu X, Sun Y, Li S, Wei Y, Tian C, et al. In Situ Saturating Mutagenesis Screening Identifies a Functional Genomic Locus That Regulates Ucp1 Expression. Phenomics (2021) 1(1):15–21. doi: 10.1007/s43657-020-00006-7 6. Kesari S, Schiff D, Drappatz J,LaFrankie D,Doherty L, Macklin EA, et al. Phase II Study of Protracted Daily Temozolomide for Low-Grade Gliomas in Adults. Clin Cancer Res (2009) 15(1):330–7. doi: 10.1158/1078-0432.CCR-08-0888 16. WangQ,LiP,WuW.ASystematicAnalysisofImmuneGenesandOverallSurvival inCancerPatients.BMCCancer(2019)19(1):1225.doi:10.1186/s12885-019-6414-6 17. Wood SL, Pernemalm M, Crosbie PA, Whetton AD. The Role of the Tumor- Microenvironment in Lung Cancer-Metastasis and its Relationship to Potential Therapeutic Targets. Cancer Treat Rev (2014) 40(4):558–66. FUNDING Supplementary Figure 1 | The relationship between CD3E expression and survival of UVM patients was shown. Supplementary Figure 1 | The relationship between CD3E expression and survival of UVM patients was shown. This study was supported by grants from: 1. 2020 Guangxi Zhuang Autonomous Region Health Committee self-funded scientific research project, project number 20201558, 2. In 2020, the general project of high-level talent scientific research project of the Affiliated Hospital of Youjiang Medical College for Nationalities (the young and middle-aged backbone talent project), contract number Y202011702, 3. 2021 Guangxi University’s young and middle-aged teachers’ basic research ability improvement project, project number 2021KY0542, and 4. The self-financing project of Guangxi Medicine and Health, project number Z20180200. Supplementary Figure 2 | The differential expression of cd3e was investigated according to the histological subtypes of LGG. The expression of CD3E in astrocytoma (n = 194) was significantly higher than that in oligoastrocytoma (n = 130, P = 6.436000e-04) or oligodendroglioma (n = 130, P = 6.418700e-04). Supplementary Figure 3 | A subgroup analysis of different clinical characteristics on clinical data to eliminate clinical bias was performed. Supplementary Figure 4 | Relations between abundance of tumor-infiltrating lymphocytes and expression, copy number, methylation, or mutation of CD3E. Supplementary Figure 5 | The relationship between the abundance of tumor infiltrating lymphocytes and the expression, copy number, and methylation or mutation of CD3E in LGG was analyzed. AUTHOR CONTRIBUTIONS Overall, we used the ESTIMATE algorithm to determine the TME-related genes in LGG by analyzing LGG samples in TCGA datasets. Through the analysis of LGG samples in GEO, we identified prognostic-related genes in LGG. In our current study, there are still many shortcomings. The first is that the LGG samples we collected are still single-center, the HNH, WL, and CL came up with the design and conception. The data analysis and visualization were conducted by WX, HDH, and XL. YW and WL conducted cell line experiments. The original writing of the draft and its editing were by SC, JW, September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 18 Tumor Microenvironment and CD3E in LGG Lu et al. ACKNOWLEDGMENTS Supplementary Figure 6 | TIDE algorithm to study the effect of CD3E on LGG patients receiving immune checkpoint inhibitor therapy. We thank J. Iacona, Ph.D., from Liwen Bianji, Edanz Editing China (www.liwenbianji.cn/ac), for editing the English text of a draft of this manuscript. We are grateful to all patients for their dedicated participation in the current study as well. Supplementary Figure 7 | The expression distribution of CD3E gene in different tumor tissues was shown. The horizontal axis represented different groups of samples, and the vertical axis represented the expression distribution of the gene. The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2021. 676124/full#supplementary-material The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2021. 676124/full#supplementary-material The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2021. 676124/full#supplementary-material SUPPLEMENTARY MATERIAL WL, and HZ. All authors contributed to the article and approved the submitted version. REFERENCES doi: 10.1016/ j.ctrv.2013.10.001 7. McCormackBM,MillerDC,BudzilovichGN,VoorheesGJ,RansohoffJ.Treatment and Survival of Low-Grade Astrocytoma in Adults–1977-1988. Neurosurgery (1992) 31(4):636–42; discussion 642. doi: 10.1227/00006123-199210000-00004 8. Turkoglu E, Gurer B, Sanli AM, Dolgun H, Gurses L, Oral NA, et al. Clinical Outcome of Surgically Treated Low-Grade Gliomas: A Retrospective Analysis of a Single Institute. Clin Neurol Neurosurg (2013) 115(12):2508–13. doi: 10.1016/j.clineuro.2013.10.010 18. Quail DF, Joyce JA. Microenvironmental Regulation of Tumor Progression and Metastasis. Nat Med (2013) 19(11):1423–37. doi: 10.1038/nm.3394 19. Jangra S, Chaudhary V, Yadav RC, Yadav NR. High-Throughput Phenotyping: A Platform to Accelerate Crop Improvement. Phenomics (2021) 1(2):31–53. doi: 10.1007/s43657-020-00007-6 9. Rathore S, Niazi T, Iftikhar MA, Chaddad A. Glioma Grading Via Analysis of Digital Pathology Images Using Machine Learning. Cancers (Basel) (2020) 12 (3). doi: 10.3390/cancers12030578 20. Bussard KM, Mutkus L, Stumpf K, Gomez-Manzano C, Marini FC. Tumor- Associated Stromal Cells as Key Contributors to the Tumor Microenvironment. Breast Cancer Res (2016) 18(1):84. doi: 10.1186/s13058-016-0740-2 10. Liu W, Xu W, Li C, Xu J, Huang K, Hu R, et al. Network Pharmacological Systems Study of Huang-Lian-Tang in the Treatment of Glioblastoma Multiforme. Oncol Lett (2021) 21(1):18. doi: 10.3892/ol.2020.12279 21. Gajewski TF, Schreiber H, Fu YX. Innate and Adaptive Immune Cells in the Tumor Microenvironment. Nat Immunol (2013) 14(10):1014–22. doi: 10.1038/ni.2703 September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 19 Tumor Microenvironment and CD3E in LGG Lu et al. Fang Yi Xue Za Zhi (2019) 53(3):334–6. doi: 10.3760/cma.j.issn.0253- 9624.2019.03.020 22. Quail DF, Joyce JA. The Microenvironmental Landscape of Brain Tumors. Cancer Cell (2017) 31(3):326–41. doi: 10.1016/j.ccell.2017.02.009 Fang Yi Xue Za Zhi (2019) 53(3):334–6. doi: 10.3760/cma.j.issn.0253- 9624.2019.03.020 23. Roesch S, Rapp C, Dettling S, Herold-Mende C. When Immune Cells Turn Bad- Tumor-Associated Microglia/Macrophages in Glioma. Int J Mol Sci (2018) 19(2). doi: 10.3390/ijms19020436 45. Morris TP, Jarvis CI, Cragg W, Phillips PPJ, Choodari-Oskooei B, Sydes MR. Proposals on Kaplan-Meier Plots in Medical Research and a Survey of Stakeholder Views: Kmunicate. BMJ Open (2019) 9(9):e030215. doi: 10.1136/bmjopen-2019-030215 24. Xu WH, Wu J, Wang J, Wan FN, Wang HK, Cao DL, et al. Screening and Identification of Potential Prognostic Biomarkers in Adrenocortical Carcinoma. Front Genet (2019) 10:821. doi: 10.3389/fgene.2019.00821 46. Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. Limma Powers Differential Expression Analyses for RNA-Sequencing and Microarray Studies. Nucleic Acids Res (2015) 43(7):e47. doi: 10.1093/nar/gkv007 25. REFERENCES Rizvi NA, Mazières J, Planchard D, Stinchcombe TE, Dy GK, Antonia SJ, et al. Activity and Safety of Nivolumab, an anti-PD-1 Immune Checkpoint Inhibitor, for Patients With Advanced, Refractory Squamous Non-Small- Cell Lung Cancer (CheckMate 063): A Phase 2, Single-Arm Trial. Lancet Oncol (2015) 16(3):257–65. doi: 10.1016/s1470-2045(15)70054-9 47. Xu W, Zheng J, Liu W, Tang H, Lu J, Yu K, et al. Traditional Chinese Medicine Bu-Shen-Jian-Pi-Fang Attenuates Glycolysis and Immune Escape in Clear Cell Renal Cell Carcinoma: Results Based on Network Pharmacology. Biosci Rep (2021). doi: 10.1042/bsr20204421 26. Carbone DP, Reck M, Paz-Ares L, Creelan B, Horn L, Steins M, et al. First-Line Nivolumab in Stage IV or Recurrent Non-Small-Cell Lung Cancer. N Engl J Med (2017) 376(25):2415–26. doi: 10.1056/NEJMoa1613493 48. Ni W, Zhang S, Jiang B, Ni R, Xiao M, Lu C, et al. Identification of Cancer- Related Gene Network in Hepatocellular Carcinoma by Combined Bioinformatic Approach and Experimental Validation. Pathol Res Pract (2019) 215(6):152428. doi: 10.1016/j.prp.2019.04.020 27. Zhang C, Cheng W, Ren X, Wang Z, Liu X, Li G, et al. Tumor Purity as an Underlying Key Factor in Glioma. Clin Cancer Res (2017) 23(20):6279–91. doi: 10.1158/1078-0432.CCR-16-2598 49. Barber EK, Dasgupta JD, Schlossman SF, Trevillyan JM, Rudd CE, et al. The CD4 and CD8 Antigens Are Coupled to a Protein-Tyrosine Kinase (p56lck) That Phosphorylates the CD3 Complex. Proc Natl Acad Sci USA (1989) 86 (9):3277–81. doi: 10.1073/pnas.86.9.3277 28. Bacac M, Fauti T, Sam J, Colombetti S, Weinzierl T, Ouaret D, et al. A Novel Carcinoembryonic Antigen T-Cell Bispecific Antibody (Cea TCB) for the Treatment of Solid Tumors. Clin Cancer Res (2016) 22(13):3286–97. doi: 10.1158/1078-0432.CCR-15-1696 50. Kreso A, Dick JE. Evolution of the Cancer Stem Cell Model. Cell Stem Cell (2014) 14(3):275–91. doi: 10.1016/j.stem.2014.02.006 29. Gaffney SG, Perry EB, Chen PM, Greenstein A, Kaech SM, Townsend JP. The Landscape of Novel and Complementary Targets for Immunotherapy: an Analysis of Gene Expression in the Tumor Microenvironment. Oncotarget (2019) 10(44):4532–45. doi: 10.18632/oncotarget.27027 51. Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, et al. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. N Engl J Med (2015) 372(26):2481–98. doi: 10.1056/NEJMoa1402121 52. Lawrence MS, Stojanov P, Mermel CH, Robinson JT, Garraway LA, Golub TR, et al. Discovery and Saturation Analysis of Cancer Genes Across 21 Tumour Types. Nature (2014) 505(7484):495–501. doi: 10.1038/nature12912 30. Ryan M, Wong WC, Brown R, Akbani R, Su X, Broom B, et al. REFERENCES TcgaspliceSeq a Compendium of Alternative mRNA Splicing in Cancer. Nucleic Acids Res (2016) 44(D1):D1018–22. doi: 10.1093/nar/gkv1288 53. Capelle L, Fontaine D, Mandonnet E, Taillandier L, Golmard JL, Bauchet L, et al. Spontaneous and Therapeutic Prognostic Factors in Adult Hemispheric World Health Organization Grade II Gliomas: A Series of 1097 Cases: Clinical Article. J Neurosurg (2013) 118(6):1157–68. doi: 10.3171/2013.1.Jns121 31. Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, et al. Ncbi GEO: Archive for Functional Genomics Data Sets–Update. Nucleic Acids Res (2013) 41(Database issue):D991–5. doi: 10.1093/nar/gks1193 32. Chan BKC. Data Analysis Using R Programming. Adv Exp Med Biol (2018) 1082:47–122. doi: 10.1007/978-3-319-93791-5_2 54. Verburg N, de Witt Hamer PC. State-of-the-Art Imaging for Glioma Surgery. Neurosurg Rev (2021) 44(3):1331–43. doi: 10.1007/s10143-020-01337-9 33. Gentles AJ, Newman AM, Liu CL, Bratman SV, Feng W, Kim D, et al. The Prognostic Landscape of Genes and Infiltrating Immune Cells Across Human Cancers. Nat Med (2015) 21(8):938–45. doi: 10.1038/nm.3909 55. Chang J, Wang Y, Guo R, Guo X, Lu Y, Ma W, et al. The Effect of Operations in Patients With Recurrent Diffuse Low-Grade Glioma: A Qualitative Systematic Review. Clin Neurol Neurosurg (2020) 196:105973. doi: 10.1016/ j.clineuro.2020.105973 34. Chakraborty H, Hossain A. R Package to Estimate Intracluster Correlation Coefficient With Confidence Interval for Binary Data. Comput Methods Programs BioMed (2018) 155:85–92. doi: 10.1016/j.cmpb.2017.10.023 56. Belykh E, Shaffer KV, Lin C, Byvaltsev VA, Preul MC, Chen L. Blood-Brain Barrier, Blood-Brain Tumor Barrier, and Fluorescence-Guided Neurosurgical Oncology: Delivering Optical Labels to Brain Tumors. Front Oncol (2020) 10:739. doi: 10.3389/fonc.2020.00739 35. Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, et al. Robust Enumeration of Cell Subsets From Tissue Expression Profiles. Nat Methods (2015) 12(5):453–7. doi: 10.1038/nmeth.3337 57. Lim M, Xia Y, Bettegowda C, Weller M. Current State of Immunotherapy for Glioblastoma. Nat Rev Clin Oncol (2018) 15(7):422–42. doi: 10.1038/s41571-018- 0003-5 36. Varghese F, Bukhari AB, Malhotra R, De A. Ihc Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. PloS One (2014) 9(5):e96801. doi: 10.1371/journal.pone.0096801 58. McGranahan T, Therkelsen KE, Ahmad S, Nagpal S. Current State of Immunotherapy for Treatment of Glioblastoma. Curr Treat Options Oncol (2019) 20(3):24. doi: 10.1007/s11864-019-0619-4 37. Smyth GK, Michaud J, Scott HS. Use of Within-Array Replicate Spots for Assessing Differential Expression in Microarray Experiments. Bioinformatics (2005) 21(9):2067–75. doi: 10.1093/bioinformatics/bti270 59. REFERENCES Abnormal DNA Methylation may Contribute to the Progression of Osteosarcoma. Mol Med Rep (2018) 17(1):193–9. doi: 10.3892/ mmr.2017.7869 66. Venteicher AS, Tirosh I, Hebert C, Yizhak K, Neftel C, Filbin MG, et al. Decoupling Genetics, Lineages, and Microenvironment in IDH-Mutant Gliomas by Single-Cell RNA-Seq. Science (2017) 355(6332). doi: 10.1126/science.aai8478 78. Zhang BL, Guo TW, Gao LL, Ji GQ, Gu XH, Shao YQ, et al. Egr-1 and RNA Pol II Facilitate Glioma Cell GDNF Transcription Induced by Histone Hyperacetylation in Promoter II. Oncotarget (2017) 8(28):45105–16. doi: 10.18632/oncotarget.15126 67. Zhang Y, Chen K, Sloan SA, Bennett ML, Scholze AR, O'Keeffe S, et al. An RNA-sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex. J Neurosci (2014) 34(36):11929–47. doi: 10.1523/JNEUROSCI.1860-14.2014 79. Huang P, Guo YD, Zhang HW. Identification of Hub Genes in Pediatric Medulloblastoma by Multiple-Microarray Analysis. J Mol Neurosci (2020) 70 (4):522–31. doi: 10.1007/s12031-019-01451-4 68. Matcovitch-NatanO, Winter DR, Giladi A, Vargas Aguilar S, SpinradA, Sarrazin S, et al. Microglia Development Follows a Stepwise Program to Regulate Brain Homeostasis. Science (2016) 353(6301):aad8670. doi: 10.1126/science.aad8670 80. Chen X, Li B, Luo R, Cai S, Zhang C, Cao X. Analysis of the Function of microRNA-375 in Humans Using Bioinformatics. BioMed Rep (2017) 6 (5):561–6. doi: 10.3892/br.2017.889 69. Schaller TH, Snyder DJ, Spasojevic I, Gedeon PC, Sanchez-Perez L, Sampson JH. First in Human Dose Calculation of a Single-Chain Bispecific Antibody Targeting Glioma Using the MABEL Approach. J Immunother Cancer (2020) 8(1). doi: 10.1136/jitc-2019-000213 81. Pasdois P, Deveaud C, Voisin P, Bouchaud V, Rigoulet M, Beauvoit B. Contribution of the Phosphorylable Complex I in the Growth Phase- Dependent Respiration of C6 Glioma Cells In Vitro. J Bioenerg Biomembr (2003) 35(5):439–50. doi: 10.1023/a:1027391831382 70. Fridman WH, Zitvogel L, Sautès-Fridman C, Kroemer G. The Immune Contexture in Cancer Prognosis and Treatment. Nat Rev Clin Oncol (2017) 14(12):717–34. doi: 10.1038/nrclinonc.2017.101 Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. 71. Chen Y, Ma D, Wang X, Fang J, Liu X, Song J, et al. Calnexin Impairs the Antitumor Immunity of CD4(+) and CD8(+) T Cells. Cancer Immunol Res (2019) 7(1):123–35. doi: 10.1158/2326-6066.CIR-18-0124 72. Bacolod MD, Talukdar S, Emdad L, Das SK, Sarkar D, Wang XY, et al. Immune Infiltration, Glioma Stratification, and Therapeutic Implications. Transl Cancer Res (2016) 5(Suppl 4):S652–6. REFERENCES Huang B, Zhang H, Gu L, Ye B, Jian Z, Stary C, et al. Advances in Immunotherapy for Glioblastoma Multiforme. J Immunol Res (2017) 2017:3597613. doi: 10.1155/2017/3597613 38. Zhao C, Sahni S. String Correction Using the Damerau-Levenshtein Distance. BMC Bioinf (2019) 20(Suppl 11):277. doi: 10.1186/s12859-019-2819-0 60. Yoshihara K, Shahmoradgoli M, Martı́nez E, Vegesna R, Kim H, Torres-Garcia W,etal.InferringTumourPurityandStromalandImmuneCellAdmixtureFrom Expression Data. Nat Commun (2013) 4:2612. doi: 10.1038/ncomms3612 39. Wu G, Feng X, Stein L. A Human Functional Protein Interaction Network and Its Application to Cancer Data Analysis. Genome Biol (2010) 11(5):R53. doi: 10.1186/gb-2010-11-5-r53 61. Mao Y, Feng Q, Zheng P, Yang L, Liu T, Xu Y, et al. Low Tumor Purity Is Associated With Poor Prognosis, Heavy Mutation Burden, and Intense Immune Phenotype in Colon Cancer. Cancer Manag Res (2018) 10:3569– 77. doi: 10.2147/CMAR.S171855 40. Gene Ontology Consortium: Going Forward. Nucleic Acids Res (2015) 43 (Database issue):D1049–56. doi: 10.1093/nar/gku1179 41. Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res (2000) 28(1):27–30. doi: 10.1093/nar/28.1.27 62. Fischer A, de Saint Basile G, Le Deist F. CD3 Deficiencies. Curr Opin Allergy Clin Immunol (2005) 5(6):491–5. doi: 10.1097/01.all.0000191886.12645.79 42. Subramanian A, Kuehn H, Gould J, Tamayo P, Mesirov JP. Gsea-P: A Desktop Application for Gene Set Enrichment Analysis. Bioinformatics (2007) 23 (23):3251–3. doi: 10.1093/bioinformatics/btm369 63. Martin-Blanco N, Jiménez Teja D, Bretones G, Borroto A, Caraballo M, Screpanti I, et al. Cd3ϵ Recruits Numb to Promote TCR Degradation. Int Immunol (2016) 28(3):127–37. doi: 10.1093/intimm/dxv060 43. Duerr JS. Immunohistochemistry. Wormbook. (2006). pp. 1–61. doi: 10.1895/ wormbook.1.105.1 64. Borroto A, Lama J, Niedergang F, Dautry-Varsat A, Alarcón B, Alcover A. The CD3 Epsilon Subunit of the TCR Contains Endocytosis Signals. J Immunol (1999) 163(1):25–31. 44. Yu SC, Qi X, Hu YH, Zheng WJ, Wang QQ, Yao HY. Overview of Multivariate Regression Model Analysis and Application. Zhonghua Yu September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 20 Tumor Microenvironment and CD3E in LGG Lu et al. 65. Bacolod MD, Barany F, Pilones K, Fisher PB, de Castro RJ. Pathways- and Epigenetic-Based Assessment of Relative Immune Infiltration in Various Types of Solid Tumors. Adv Cancer Res (2019) 142:107–43. doi: 10.1016/ bs.acr.2019.01.003 76. Kim DM, Nimigean CM. Voltage-Gated Potassium Channels: A Structural Examination of Selectivity and Gating. Cold Spring Harb Perspect Biol (2016) 8 (5). doi: 10.1101/cshperspect.a029231 77. Chen XG, Ma L, Xu JX. September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org REFERENCES doi: 10.21037/tcr.2016.10.69 Publisher’s Note: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher. 73. Berger MF, Mardis ER. The Emerging Clinical Relevance of Genomics in Cancer Medicine. Nat Rev Clin Oncol (2018) 15(6):353–65. doi: 10.1038/ s41571-018-0002-6 74. Wu S, Gu Y, Huang Y, Wong TC, Ding H, Liu T, et al. Novel Biomarkers for Non-Functioning Invasive Pituitary Adenomas Were Identified by Using Analysis of Micrornas Expression Profile. Biochem Genet (2017) 55(3):253– 67. doi: 10.1007/s10528-017-9794-9 Copyright © 2021 Lu, Li, Xu, Wu, Wang, Chen, Zhang, Huang, Huang and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. 75. Xu W, Liu WR, Xu Y, Tian X, Anwaier A, Su JQ, et al. Hexokinase 3 Dysfunction Promotes Tumorigenesis and Immune Escape by Upregulating Monocyte/ Macrophage Infiltration Into the Clear Cell Renal Cell Carcinoma Microenvironment. Int J Biol Sci (2021) 17(9):2205–22. doi: 10.7150/ijbs.58295 September 2021 | Volume 11 | Article 676124 Frontiers in Oncology | www.frontiersin.org 21
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Volume-outcome relationship in rectal cancer surgery
Discover Oncology
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cc-by
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Abstract Potentiation of lower volume surgical units may yield optimal perioperative outcomes. Keywords  Rectal cancer · Volume/outcome · Anastomotic leak L. Siragusa1   · B. Sensi1 · D. Vinci1 · M. Franceschilli1 · C. Pathirannehalage Don1 · G. Bagaglini1 · V. Bellato1 · M. Campanelli1 · G. S. Sica1 Received: 25 February 2021 / Accepted: 2 April 2021 © The Author(s) 2021    OPEN Abstract Introduction  Hospital centralization effect is reported to lower complications and mortality for high risk and complex surgery operations, including colorectal surgery. However, no linear relation between volume and outcome has been demonstrated. Aim of the study was to evaluate the increased surgical volume effect on early outcomes of patient undergoing laparoscopic restorative anterior rectal resection (ARR). Methods  A retrospective analysis of all consecutive patients undergoing ARR with primary anastomosis between Novem- ber 2016 and December 2020 after centralization of rectal cancer cases in an academic Centre. Short-term outcomes are compared to those of patients operated in the same unit during the previous 10 years before service centralization. The primary outcome was estimated anastomotic leak rate. Mean operative time, need of conversion, postoperative use of blood transfusion, radicality, in-hospital stay, number and type of complications, readmission and reoperation rate, mortality and 1-year and stoma persistence rates were evaluated as secondary outcomes. Results  86 patients were operated in the study period and outcomes compared to those of 101 patients operated dur- ing the previous ten years. Difference in volume of surgery was significant between the two periods (p 0.019) and the estimated leak rate was significantly lower in the higher volume unit (p 0.047). Mean operative time, need of conversion, postoperative use of blood transfusion and in-hospital stay (p < 0.05) were also significantly reduced in Group A. C l i Thi d h h hif d hi h l i l i i d d d Results  86 patients were operated in the study period and outcomes compared to those of 101 patients operated dur- ing the previous ten years. Difference in volume of surgery was significant between the two periods (p 0.019) and the estimated leak rate was significantly lower in the higher volume unit (p 0.047). Mean operative time, need of conversion, postoperative use of blood transfusion and in-hospital stay (p < 0.05) were also significantly reduced in Group A. Conclusion  This study suggests that the shift toward higher volume in rectal cancer surgery is associated to decreased anastomotic leak rate. Potentiation of lower volume surgical units may yield optimal perioperative outcomes. postoperative use of blood transfusion and in-hospital stay (p < 0.05) were also significantly reduced in Group A. Conclusion  This study suggests that the shift toward higher volume in rectal cancer surgery is associated to decreased anastomotic leak rate. Discover Oncology Discover Oncology Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 1 3 2.2  Inclusion and exclusion criteria We included all patients aged above 18 years with a diagnosis of a cancer located in the rectum, defined according to the international definition by D’Souza et al. [34], scheduled for anterior rectal resection with primary anastomosis (with or without diverting loop ileostomy). 2.1  Study design and population A single-centre retrospective study evaluating effect of service centralization on the perioperative outcomes of rectal cancer patients’ undergoing surgical resection. A single-centre retrospective study evaluating effect of service centralization on the perioperative outcomes of rectal cancer patients’ undergoing surgical resection. In November 2016, colon and rectal cancer patients referred to our Institution were centralized in a newly designed Minimally Invasive Surgery Unit, under a single surgeon. The study involved all consecutive eligible patients undergoing elective restorative anterior rectal resection (ARR) for rectal cancer between November 2016 and December 2020 in the new unit (Group A). Outcomes for Group A were compared with an historical control group, consisting of all consecutive patients under- going ARR in the same hospital between January 2006 and October 2016 (Group B). Data were extrapolated from a prospectively maintained database, recording continuous and discrete variables regard- ing biometric data, patient-related risk factors, preoperative blood test, tumor characteristics, neoadjuvant therapy, surgical approach, de-functioning stoma and outcomes. During the postoperative period, any complication (intended as any adverse event during the follow-up period) including infective complications, anastomotic leak (“A defect of the intestinal wall at the anastomotic site leading to a communication between the intra- and extraluminal compartments) [30], surgical site infections (SSI, defined according to the Centre for Disease Control and Prevention, CDC/NHNS) [31], pneumonia (clinical symptoms, confirmed by radio- logical examination), ileus, bleeding, was recorded and graded according to Clavien-Dindo classification [32]. A scheduled Enhanced recovery after surgery (ERAS) protocol, based on the 2012 guidelines available at the time [33] was systematically applied during the study period. In the control group no ERAS protocol was formally in place although some items, such as avoidance of nasogastric tube and urinary catheter, early feeding, early mobilization and pre-operative thromboprophylaxis, were commonly applied. 1  Introduction The first article describing a relationship between volume and outcome was reported by Luft et al. in 1979 [1]. Since then, an increasing evidence suggests that a high surgical volume is a critical factor in improving post-operative and long-term outcomes for challenging oncological procedures such as esophagectomy, gastrectomy, pancreatectomy and hepatectomy [2–8]. Therefore, specific policies across several countries have been implemented to provide a better care by centralizing the provision of this procedures in high-volume hospitals [9, 10]. The same is not validated for rectal cancer where conflicting existing evidences make the volume/outcome relation- ship still debatable [11, 12]. Nevertheless, rectal cancer management is particularly challenging requiring a careful preoperative staging and multidisciplinary team discussion, essential to individualize the treatment to the many options available (neoadjuvant radio- chemotherapy, local excisions, surgery and watch and wait strategies) depending on patients, cancer stage and *  L. Siragusa, leandros93@hotmail.it | 1Department of Surgical Science, University Tor Vergata, Viale Oxfo | https://doi.org/10.1007/s12672-021-00406-9 1 3 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Research Discover Oncology (2021) 12:11 Discover Oncology Discover Oncology ( location [13]. In addition, the adoption of new techniques such as laparoscopic and robotic approach and fast-track protocols demonstrates to be safe and effective in guaranteeing equal oncological outcomes and some short-term advantages, with an eye to preserving better quality of life (QOL) [14–20]. location [13]. In addition, the adoption of new techniques such as laparoscopic and robotic approach and fast-track protocols demonstrates to be safe and effective in guaranteeing equal oncological outcomes and some short-term advantages, with an eye to preserving better quality of life (QOL) [14–20]. The narrow pelvis anatomy makes rectal resection a complex surgery and noble structures proximity makes a challenge for surgeons to minimize morbidity while still achieving a good oncological outcome. Thus, morbidity and mortality in rectal cancer are still relatively high with anastomotic leakage remaining the most fearful complication characterized by long lasting clinical consequences, including mortality, significant impact on long-term functional and oncological outcomes and QOL [21–29]. While several authors have already compared low- and high-volume hospitals with conflicting results, the effect of increasing volume in a single institution has not been analyzed yet. Hence, the aim of this single-center study in which is evaluated the effect of surgical volume increase on anastomotic leakage and postoperative outcomes of patient undergoing restorative laparoscopic anterior rectal resection (ARR) for cancer. Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Research 2.6  Ethics This study was conducted according to the international ethical recommendations on clinical research established by the Helsinki Declaration. The study was conducted in accordance with STROBE criteria (htpp://strobe-statement.org) and registered under clinicaltrials.gov: NCT04761536 [36]. 2.4  Endpoints This study’s primary outcome was to evaluate the estimated anastomotic leak rate difference amongst the two groups. Leaks were evaluated according to the grading of anastomotic leakage following anterior resection of the rectum pro- posed by the International Study Group of Rectal Cancer [35]. y y Secondary endpoints were: operative time, use of minimally invasive approaches, conversion to open surgery rate, postoperative use of blood transfusion, oncological radicality, postoperative length of stay (LOS), 30-days postopera- tive complications (as classified by Clavien-Dindo), surgical site infections, pneumonia, ileus, bleeding, reoperation, readmission, mortality and stoma persistence 1-year after surgery. All endpoints were analyzed in both group, A and B. 3.2  Surgery volume The number of procedures performed per year was significantly higher in the period November 2016-December 2020 (Group A) when compared to the period January 2006-October 2016 (Group B) with a mean procedure per year of 22 versus 9 respectively (p 0.019) (Table 2; Fig. 1). 3.1  Study population From January 2006 to December 2020, 203 consecutive patients diagnosed with rectal cancer scheduled for anterior rectal resection at Tor Vergata Hospital in Rome, Italy. Sixteen patients did not meet the inclusion criteria and were excluded from the analysis: five patients were affected by intestinal bowel diseases, one patient was classified at high risk for surgery (ASA 4), four patients had emergency surgery, six patients underwent a rectal resection without primary anastomosis. One-hundred-eighty-seven patients undergoing elective ARR with primary anastomosis were subsequently included in the study analysis: eighty-six operated of ARR between November 2016 and December 2020 and treated following our ERAS protocol (Group A) and one-hundred-one operated of ARR between January 2006 and October 2016 and treated with conventional care. Patient selection is summarized in Table 1. 2.5  Statistical analysis Characteristics were summarized by means of the levels for categorical variables or by means of quantiles for continuous variables. Non-parametric tests were performed for comparisons between groups (Chi-Squared and Fisher Exact test in case of categorical variables, Wilcoxon test in case of continuous variables). Cox-Stuart test was used to test whether the data have an increasing or decreasing trend. Due to large temporal difference between groups A and B, a prediction of “surgical volume” and “leak” for the period 2021–2026 was made using a linear regression model bases on the data obtained in the period 2017–2020. All tests were 2-sided, accepting p < 0.05 as indicating a statistically significant dif- ference and confidence intervals were calculated at 95% level. The analysis was performed using the R software (R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://​www.R-​proje​ct.​org/). 2.3  Exclusion criteria Exclusion criteria were inflammatory bowel disease, acquired or congenital immunodeficiency, preoperative infection, pregnancy, high anesthesiology risk (ASA IV), emergency surgery, presence of synchronous cancers, failure to perform rectal resection and primary anastomosis. :.(123456789 3 | https://doi.org/10.1007/s12672-021-00406-9 3.3  Baseline patient’s characteristic 1   Volume of surgery per year 2 1 10 15 8 18 17 9 4 16 1 20 24 27 15 Restorative ARR per year Table 1   Patients selection Table 1   Patients selection 203 patients eligible for rectal cancer resection Group A (Nov2016-Dec 2020) 86 ARR treated following ERAS protocol Group B (Jan 2006- Oct 2016) 101 ARR following standard care 16 patients excluded 5 IBD 1 ASA4 4 emercency surgery 6 rectal resection without primary anastomosis Table 2   Volume of surgery Hospital Volume 2006–2016, N = 11 2017–2020, N = 4 p-value 0.019 q-value20.093 Procedure per year Mean 9 (7) 22 (5) Minimum, Maximum 1, 18 15, 27 Fig. 1   Volume of surgery per year 2 1 10 15 8 18 17 9 4 16 1 20 24 27 15 Restorative ARR per year 203 patients eligible for rectal cancer resection Table 2   Volume of surgery Hospital Volume 2006–2016, N = 11 2017–2020, N = 4 p-value 0.019 q-value20.093 Procedure per year Mean 9 (7) 22 (5) Minimum, Maximum 1, 18 15, 27 2 1 10 15 8 18 17 9 4 16 1 20 24 27 15 Restorative ARR per year and distant metastasis (M). Preoperative hemoglobin was found to be higher in Group B with a mean of 13.38 ± 2.18 vs 42 ± 2.07 of Group A (p 0.003). Primary tumor extent (T) was significantly higher in Group A versus Group B (p 0.002). elines patients’ characteristics are summarized in Table 3. 1   Volume of surgery per 2 1 10 15 8 18 17 9 4 16 1 20 24 27 15 Restorative ARR per year Restorative ARR per year (N) and distant metastasis (M). Preoperative hemoglobin was found to be higher in Group B with a mean of 13.38 ± 2.18 vs 12.42 ± 2.07 of Group A (p 0.003). Primary tumor extent (T) was significantly higher in Group A versus Group B (p 0.002). Baselines patients’ characteristics are summarized in Table 3. 3.3  Baseline patient’s characteristic The two groups were comparable with respect to age, sex, BMI, comorbidities, ASA score, preoperative albumin, distance from anal verge, neoadjuvant radiotherapy, mesorectal excision, defunctioning temporary stoma, positive lymph nodes (01231 3456789) 3 Research Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 (N) and distant metastasis (M). Preoperative hemoglobin was found to be higher in Group B with a mean of 13.38 ± 2.18 vs 12.42 ± 2.07 of Group A (p 0.003). Primary tumor extent (T) was significantly higher in Group A versus Group B (p 0.002). Baselines patients’ characteristics are summarized in Table 3. 3.4  Outcomes Table 1   Patients selection 203 patients eligible for rectal cancer resection Group A (Nov2016-Dec 2020) 86 ARR treated following ERAS protocol Group B (Jan 2006- Oct 2016) 101 ARR following standard care 16 patients excluded 5 IBD 1 ASA4 4 emercency surgery 6 rectal resection without primary anastomosis Table 2   Volume of surgery Hospital Volume 2006–2016, N = 11 2017–2020, N = 4 p-value 0.019 q-value20.093 Procedure per year Mean 9 (7) 22 (5) Minimum, Maximum 1, 18 15, 27 Fig. 1   Volume of surgery per year 2 1 10 15 8 18 17 9 4 16 1 20 24 27 15 Restorative ARR per year Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology (2021) 12:11 Research Discover Oncology (N) and distant metastasis (M). Preoperative hemoglobin was found to be higher in Group B with a mean of 13.38 ± 2.18 vs 12.42 ± 2.07 of Group A (p 0.003). Primary tumor extent (T) was significantly higher in Group A versus Group B (p 0.002). Baselines patients’ characteristics are summarized in Table 3. 3.4  Outcomes Anastomotic leak was respectively 3.5% in Group A and 8.9% in Group B (p 0.149), higher but non-significant (Fig. 2). However, estimated leak rate (2017–2026) for group A was significantly reduced when compared to group B (p 0.047) Table 1   Patients selection 203 patients eligible for rectal cancer resection Group A (Nov2016-Dec 2020) 86 ARR treated following ERAS protocol Group B (Jan 2006- Oct 2016) 101 ARR following standard care 16 patients excluded 5 IBD 1 ASA4 4 emercency surgery 6 rectal resection without primary anastomosis Table 2   Volume of surgery Hospital Volume 2006–2016, N = 11 2017–2020, N = 4 p-value 0.019 q-value20.093 Procedure per year Mean 9 (7) 22 (5) Minimum, Maximum 1, 18 15, 27 Fig. Vol:.(123456789 1 3 3.4  Outcomes 1 Anastomotic leak was respectively 3.5% in Group A and 8.9% in Group B (p 0.149), higher but non-significant (Fig. 2). However, estimated leak rate (2017–2026) for group A was significantly reduced when compared to group B (p 0.047) (Table 4). Operative time and the use of postoperative blood transfusion were significantly lower in Group A compared to group B: 190.3 ± 63 vs 220.7 ± 70.8 (p 0.002) and 11.6 vs 24.7% (p 0.002). Also, there was a significant higher use of laparoscopy in group A vs group B: 52.3 vs 19.8% (p 0.0002) and a reduction in the conversion to open surgery: 8.1 vs 28.5% (p 0.002). Anastomotic leak was respectively 3.5% in Group A and 8.9% in Group B (p 0.149), higher but non-significant (Fig. 2). However, estimated leak rate (2017–2026) for group A was significantly reduced when compared to group B (p 0.047) (Table 4).i Operative time and the use of postoperative blood transfusion were significantly lower in Group A compared to group B: 190.3 ± 63 vs 220.7 ± 70.8 (p 0.002) and 11.6 vs 24.7% (p 0.002). Also, there was a significant higher use of laparoscopy in group A vs group B: 52.3 vs 19.8% (p 0.0002) and a reduction in the conversion to open surgery: 8.1 vs 28.5% (p 0.002). 3.4  Outcomes Vol:.(123456789 1 3 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology (2021) 12:11 Discover Oncology Parameters Group A (rectal cancer 2017–2020) (n = 86) Group B (rectal cancer 2006– 2016) (n = 101) P Age (mean, SD) 67.3 ± 12.2 67.94 ± 10.8 0.704 Sex % 0.460  Male 46–53.5% 60–59.4% Female 40–46.5% 41–39.6% Preoperative BMI (mean, SD) 25.6 ± 4.6 26,3 ± 4.2 0.278 ASA score % 0.407  1 14–16.2% 20–19.8%  2 38–44.1% 49–48.5%  3 34–39.5% 30–29.7% Morbidity %  Diabetes 6–6.9% 14–13.8% 0.158  Hypertension 38–44.1% 51–50.5% 0.463  Cardiovascular disease 22–25.6% 21–20.8% 0.488  Respiratory disease 13–15.1% 10–9.9% 0.3721 Preoperative albumin (gr/dl) (mean, SD) 3.97 ± 0.51 3.87 ± 0.54 0.197 Preoperative hemoglobin (gr/dl) (mean, SD) 12.42 ± 2.07 13.38 ± 2.18 0.003 Distance from anal verge (cm) (mean, SD) 7.1 ± 2.8 6.7 ± 2.5 0.304 T % 0.002  1 10–11.6% 21–20.8%  2 16–18.6% 17–16.8%  3 39–45.4% 58–57.4%  4a 14–16.3% 4–3.9%  4b 7–8.1% 1–1% N + % 37–43% 36–35.6% 0.367 M + % 13–15.1% 7–6.9% 0.096 Neoadjuvant RT % 21–24.4% 27–26.7% 0.740 Surgical approach %  Laparoscopy % 45–52.3% 20–19.8%  Open 37–43% 73–72.3% 0.0002  Converted 4–4.7% 8–7.9% Mesorectal excision %  TME 60–69.7% 69–68.3% 1  PME 26–30.3% 32–31.7% Defunctioning Stoma % 32–37.3% 38–37.6% 1 Mean and median LOS for group A and B were found to be significantly different: 6.5 ± 3.8 vs 12 ± 10.5 and 5 vs 9 days respectively (p 0.001). 3.4  Outcomes Table 3   Baseline characteristics Parameters Group A (rectal cancer 2017–2020) (n = 86) Group B (rectal cancer 2006– 2016) (n = 101) P Age (mean, SD) 67.3 ± 12.2 67.94 ± 10.8 0.704 Sex % 0.460  Male 46–53.5% 60–59.4% Female 40–46.5% 41–39.6% Preoperative BMI (mean, SD) 25.6 ± 4.6 26,3 ± 4.2 0.278 ASA score % 0.407  1 14–16.2% 20–19.8%  2 38–44.1% 49–48.5%  3 34–39.5% 30–29.7% Morbidity %  Diabetes 6–6.9% 14–13.8% 0.158  Hypertension 38–44.1% 51–50.5% 0.463  Cardiovascular disease 22–25.6% 21–20.8% 0.488  Respiratory disease 13–15.1% 10–9.9% 0.3721 Preoperative albumin (gr/dl) (mean, SD) 3.97 ± 0.51 3.87 ± 0.54 0.197 Preoperative hemoglobin (gr/dl) (mean, SD) 12.42 ± 2.07 13.38 ± 2.18 0.003 Distance from anal verge (cm) (mean, SD) 7.1 ± 2.8 6.7 ± 2.5 0.304 T % 0.002  1 10–11.6% 21–20.8%  2 16–18.6% 17–16.8%  3 39–45.4% 58–57.4%  4a 14–16.3% 4–3.9%  4b 7–8.1% 1–1% N + % 37–43% 36–35.6% 0.367 M + % 13–15.1% 7–6.9% 0.096 Neoadjuvant RT % 21–24.4% 27–26.7% 0.740 Surgical approach %  Laparoscopy % 45–52.3% 20–19.8%  Open 37–43% 73–72.3% 0.0002  Converted 4–4.7% 8–7.9% Mesorectal excision %  TME 60–69.7% 69–68.3% 1  PME 26–30.3% 32–31.7% Defunctioning Stoma % 32–37.3% 38–37.6% 1 Mean and median LOS for group A and B were found to be significantly different: 6.5 ± 3.8 vs 12 ± 10.5 and 5 vs 9 days respectively (p 0.001). No differences were found between Groups in overall postoperative complications, SSI, pneumonia, bleeding, read- mission rate, mortality, 1-year stoma persistence and reoperation rate. No differences were found between Groups in overall postoperative complications, SSI, pneumonia, bleeding, read- mission rate, mortality, 1-year stoma persistence and reoperation rate. Three anastomotic leaks were detected in Group A: one late leak grade B in a patient who already had a protective loop ileostomy fashioned at index operation, was treated conservatively; another early leak grade A was also treated conservatively, whilst the third was a C grade leak requiring reoperation, abdominal lavage and a defunctioning loop colostomy. Both patients have loop ileostomy and colostomy closure after 9 and 33 months respectively. Three anastomotic leaks were detected in Group A: one late leak grade B in a patient who already had a protective loop ileostomy fashioned at index operation, was treated conservatively; another early leak grade A was also treated conservatively, whilst the third was a C grade leak requiring reoperation, abdominal lavage and a defunctioning loop colostomy. 3.4  Outcomes surgery: in two cases the anastomosis was saved and lateral colostomy fashioned; in two cases the rectal stump sutured and an end-colostomy created. Out of the eight patients having a defunctioning stoma, four were never recanalized while the other four after 2, 7, 9 and 12 months. No leak-related mortality was observed in both Groups. y p One patient died (massive bowel ischemia) in Group A and two in Group B (one patient had an haemorrhagic shock and one suffered of heart failure). Outcomes results are summarized in Table 5. 3.4  Outcomes Both patients have loop ileostomy and colostomy closure after 9 and 33 months respectively. In Group B, nine leaks were observed (one grade A, one grade B, seven grade C): two patients with diverting stomas developed leaks grade A and B and were treated conservatively; three patients with early leaks grade C who also had a loop ileostomy, required reoperation, abdominal lavage and drainage. Four patients with grade C leaks also required In Group B, nine leaks were observed (one grade A, one grade B, seven grade C): two patients with diverting stomas developed leaks grade A and B and were treated conservatively; three patients with early leaks grade C who also had a loop ileostomy, required reoperation, abdominal lavage and drainage. Four patients with grade C leaks also required (0121 3456789) 3 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology Research surgery: in two cases the anastomosis was saved and lateral colostomy fashioned; in two cases the rectal stump sutured and an end-colostomy created. Out of the eight patients having a defunctioning stoma, four were never recanalized while the other four after 2, 7, 9 and 12 months. No leak-related mortality was observed in both Groups. One patient died (massive bowel ischemia) in Group A and two in Group B (one patient had an haemorrhagic shock and one suffered of heart failure). Outcomes results are summarized in Table 5. Fig. 2   Ratio leak/year between Groups Table 4   Anastomotic leak prediction Leak Prediction LEAK no LEAK P (0.047) 2006–2016 9 92 2017–2026 7 221 Fig. 2   Ratio leak/year between Groups Table 4   Anastomotic leak prediction Leak Prediction LEAK no LEAK P (0.047) 2006–2016 9 92 2017–2026 7 221 surgery: in two cases the anastomosis was saved and lateral colostomy fashioned; in two cases the rectal stump sutured and an end-colostomy created. Out of the eight patients having a defunctioning stoma, four were never recanalized while the other four after 2, 7, 9 and 12 months. No leak-related mortality was observed in both Groups. surgery: in two cases the anastomosis was saved and lateral colostomy fashioned; in two cases the rectal stump sutured and an end-colostomy created. Out of the eight patients having a defunctioning stoma, four were never recanalized while the other four after 2, 7, 9 and 12 months. No leak-related mortality was observed in both Groups. :.(123456789 3 4  Discussion This study analyzes how anastomotic leak and perioperative outcomes of patients undergoing anterior rectal resection for cancer are influenced by a significant increase in surgical volume at the same institution.i The main result of this study is the demonstration of a significant reduction in estimated anastomotic leak rate fol- lowing ARR possibly due to centralization of service within the same Hospital. A correlation between volume and anastomotic leak rates has been reported in only two other studies in the litera- ture: a metanalysis by Huo et al., including 15,446 patients, demonstrated a significant reduction in anastomotic leak rate for rectal surgery with a HR of 0.75 (CI 95% 0.58–0.97) while, on the contrary, in a Dutch series, anastomotic leak was decreased in low-volume Hospitals for T1-3 rectal cancers [37, 38]. Other two notable studies are the large series by El Amrani et al. and Burns et al. [39, 40]. The former analyzed 45.569 rectal cancer resections performed in France between 2012 and 2016 and could not demonstrate a correlation between volume and anastomotic dehiscence. The latter identi- fied 109.261 patients undergoing colorectal resection and again no significant association between surgical volume and leak was found. Overall the existing literature is inconclusive on this aspect. Our study brings new data in favor of a positive volume-outcome correlation in rectal cancer surgery in a single institu- tion. Between January 2006 and November 2016 five surgeons in three surgical units within the same large, tertiary aca- demic center were operating on rectal cancer patients. In November 2016, a decision to centralize rectal cancer patients to only one surgical unit was taken. The decision was taken after an internal audit, in accordance between surgical units and with full support from the top. The audit served as a baseline assessment and guided further developments. A core team was established, with common perspectives and objectives. Interactions with other specialist units, including Gas- troenterology, Oncology, Radiology and Radiotherapy were strengthened through more frequent, specifically dedicated multi-disciplinary meetings. 4  Discussion Furthermore, in order to increase colorectal cancer case referral to the unit, a closer col- laboration with General Practitioners (GP) was started by seeking out local GPs to inform them and making them active l:.(123456789 3 :.(123456789 3 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology (2021) 12:11 Discover Oncology (20 Research Discover Oncology Table 5   Results of primary and secondary outcomes Parameters Group A (rectal cancer 2017–2020) (n = 86) Group B (rectal cancer 2006– 2016) (n = 101) P Operative Time (min) (mean, SD) 190.3 ± 63 220.7 ± 70.8 0.002 Need for conversion to open % 4/49–8.1% 8/28–28.5% 0.002 Postoperative blood transfusion % 10–11.6% 25–24.7% 0.024 Radicality % 0.552  R1 4–4.7% 7–6.9%  R2 0–0% 0–0% Postoperative length hospital stay (days) 0.001 (mean, SD) (median) 6.5 ± 3.8 5 12 ± 10.5 9 Complications % n patient 17–19.7% 29–28.7% 0.176 Anastomotic leak 3–3.48% 9–8.9% 0.149 Ileus 10–8.6% 19–18.8% 0.228 SSI 6–7% 10–9.9% 0.603 Pneumonia 4–4.6% 7–6.9% 0.552 Bleeding 1–1.2% 5–5% 0.220 Clavien-Dindo % 0.555  0 63–73.3% 62–61.4%  1 4–4.7% 10–9.9%  2 12–13.9% 17–16.8%  3a 3–3.5% 3–3%  3b 3–3.5% 5–5%  4 0–0% 2–2%  5 1–1.2% 2–2% Reoperation rate % 3–3.5% 10–9.9% 0.147 30 days readmission rate % 2–2.3% 3–3% 1 30 days mortality % 1–1.2% 2–2% 1 1-year stoma persistence % 9/33–27.2% 18/43–41.8% 0.231 Table 5   Results of primary and secondary outcomes contributors to the project. Operational preparation and strategic planning helped building strong referral networks and, at the same time, the use of laparoscopy and implementation of enhanced recovery pathways was promoted. contributors to the project. Operational preparation and strategic planning helped building strong referral networks and, at the same time, the use of laparoscopy and implementation of enhanced recovery pathways was promoted. Patients in the two groups were comparable for what concern known risk factors for anastomotic dehiscence, such us diabetes, smoking attitude, etc. [41, 42]. A few confounders may be pointed out but most of them are not expected to influence results significantly. The two cohorts are separated in time and it could be argued that change of practice other than volume might have resulted in the observed results. 4  Discussion First, rectal cancer management is particularly complex in many respects, needing multidisciplinary evaluation, availability of numer- ous treatment options, specialist nurses, teamwork and possibly research facilities [48–50]. Furthermore, it is often a complex procedure requiring highly skilled surgeons to perform meticulous dissection in the narrow space of the pelvis, using minimally invasive techniques. On the other hand, the evidence regarding volume/outcome is still too conflicting to draw a conclusion in favor of centralization [51]. Nevertheless, some evidences in favor of a better outcome in high volume facilities comes from multiple large series and metanalysis. The most relevant finding is a decreased 30-days mortality, which is reported in many series [36, 52, 53]. Overall morbidity is reduced in the series reported by El Amrani et al. [39]; Baek et al. report higher rate of sphincter saving procedures, and Jonker et al. found a higher rate of complete radical resection for T4 cancers [38, 53]. Aquina et al. argues that high volume surgeons in high volume hospitals only obtain the best results [52]. Examples of centralizations in Europe for rectal cancer surgery exists in the Netherlands, Germany, Ireland, Norway, Sweden and Spain [54–58]. Yet, in a Dutch series by Jonker et al., high volume hospitals perform worse than low volume in terms of complica- tions and other equally large series also failed to find any significant differences between low and high-volume centers [11, 38, 59–61]. A big limitation in confronting these studies is the definition of “high volume” as there is no consensus on the cutoff value. Recent UK guidelines specifically on this topic could not define a threshold because evidence is not strong enough to set one, since it would mean to cut out hospitals currently performing fewer procedure without a certain justification [12]. Another aspect is whether the surgeon rather than the center should be the target of centralization. Although some investigators reported better outcome in high volume surgeons, studies so far have shown a high variation in outcomes with mortality ranging from 0 to 7.7% suggesting that high volume per se, not supported by adequate structures and investments, could not be sufficient to improve outcome [61]. 4  Discussion Yet, leak rates after ARR have been reported unchanged throughout the literature for many years and no reproducible significant improvement was introduced in clinical prac- tice between 2006 and 2020, with the possible exception of indocyanine green, which in any case was not used in this series [43, 44]. The two groups, despite being relatively homogeneous, differ in some respects. A fast-track protocol has been implemented in the second time period (resulting in fact in lower LOS) but it has been widely demonstrated that ERAS has no impact on anastomotic leak [19, 20]. The same can be asserted for laparoscopy, which can reduce other postoperative complications such us surgical site infections, but does not affect dehiscence rate [14–16]. Depth of invasion (T stage) was greater in Group A, suggesting a surgery generally more demanding and more prone to complications in Group A, therefore adding value to the results. Finally, patients in Group B tended to have higher preoperative hemoglobin values and a higher need for transfusions, which may be interpreted as an increased intra- post-operative bleeding. This, indeed, may have favored Group A, as acute anemia is a known risk factor for anastomotic fistula [45, 46]. Yet, this may be justified with improved intra and postoperative surgical and anesthesiological manage- ment, referable to increased volume. As Group A spanned a much smaller number of years than Group B, prediction of estimated leak rate for the years 2021–2026 was needed to render the two groups susceptible to (statistically) more appropriate comparison. (01231 3456789) 3 23456789) 3 | https://doi.org/10.1007/s12672-021-00406-9 Research Discover Oncology (2021) 12:11 Research Discover Oncology Anastomotic leakage is a very severe complication after ARR, often treated multidisciplinary with a reported rate up to 13.4% in an early phase and around 20% in the long-term [47]. Generally, mortality rate is low and, in our series, we did not report any leak-related mortality even though it has been reported to be up to 20% in some studies [21, 22, 27, 47]. Besides mortality, anastomotic leak has a significant impact on long-term functional outcome with the risks of sphincterial function loss and an unintended permanent stoma rate around 20% and it has a significant impact in quality of life and costs for health system [23–27]. Rationale in favor of case centralization to high volume centers is based on two consideration. :.(123456789 3 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology (2021) 12:11 | https://doi.org/10.1007/s12672-021-00406-9 Research Furthermore, although being a study on surgical volume, rather than supporting “centralization” of care to pre-existing high volume units, results from this study embrace the possibility of “potentiation” of surgical units already present to optimize results, in line with the current literature. Some limitations to this study are acknowledged by the authors. In particular, the retrospective nature of the study limit reliability of results, the number of patients treated is relatively low representing a potential bias and the single center experience is not easily generalizable to other centers. Oncologic outcomes have not been analyzed in the present study for lack of sufficient follow up for the most recent cohort of patients. Declarations Ethics approval  According to the IRB of Policlinico Tor Vergata, research study conducted retrospectively from data obtained for clinical pur- pose do not need ethical approval. The study was conducted in accordance with STROBE criteria (htpp://strobe-statement.org) and registered under clinicaltrials.gov: NCT04761536. This study was conducted according to the international ethical recommendations on clinical research established by the 1964 Helsinki Declaration. Consent to participate and to publish  Written informed consent was obtained from all subjects involved in the study and no patients can be identified in the present study. Competing interest  The authors declare no conflict of interest. Open Access  This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adapta- tion, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. 5  Conclusion Our study demonstrates that in response to an increased volume of ARR procedures for rectal cancer in a surgical unit, postoperative estimated anastomotic leak rate was significantly reduced despite treatment of more complex cases. Potentiation of existing low/medium volume surgical departments able to provide standard care for rectal cancer, by operational preparation and strategic planning, can yield improved perioperative results. Authors’ contributions  LS and BS wrote the manuscript and made substantial direct equal intellectual contribution. GSS, LS, BS, VB, CPD, DV, GB, MC and MF have contributed to the conception, design, analysis and/or interpretation of data and they made substantial intellectual contribution. GSS critically revised the manuscript. All authors have read and agreed to the published version of the manuscript. Funding  This research didn’t received grants from any founding agency in the public, commercial or not-for-profit sectors. Data availability  Data supporting reported results can be found in the database of Policlinico Tor Vergata (www.​ptvon​line.​it). Data are protected and access availability must be obtained. Code availability  Not applicable. 4  Discussion As a matter of fact, current guidelines recommend treat- ment in centers that can provide standard of care management including multidisciplinary approach (with dedicated oncologists, radiologists, radiation oncologists, endoscopists, surgeons and specialist nurses) but do not make any rec- ommendation regarding hospital volume [13]. Other finding which would testimony on the benefits of volume increase are reduction in LOS, mean operative time, blood transfusion and need of conversion to open surgery. However, giving the retrospective nature of the study and the different time spam in which the two groups of patients were operated, it cannot be clarified whether these results are in effect due to other factors such as the implementation of ERAS and laparoscopy during the years. It is possible that the increase in volume reduces operative time, need for conversion to open surgery and postoperative blood transfu- sions; LOS could be correlated to both ERAS and minimally invasive surgery approach [15, 20, 62–66]. Other secondary outcomes such as postoperative complications, readmission rate, reoperation and mortality rate and 1-year stoma per- sistence were not significant in this study. It is unknown whether this could be due to the low accrual.f gi y Overall, this study seems to add new information on the effect of volume on rectal surgery. To the best of our knowledge, this is the first study evaluating effects of surgical volume in rectal cancer perioperative outcomes within the same Hospital. Therefore, it is pioneering in investigating effects of increasing volume in one depart- ment, rather than comparing different centers with different contexts, in an effort to isolate volume effect and minimize bias due to sample heterogeneity. Most studies in the literature come from population registry studies, involving many different hospitals and many different surgeons within the same Hospital, assembling a heterogeneous jumble of dif- ferent practices in pre-, intra- and post-operative care. Patients in this study represent a homogenous group of patients managed in the same institution with uniform practices regarding protocols of treatment (e.g. neoadjuvant therapy), and postoperative management (e.g. early detection of leak with serial blood tests, CT scan with contrast per rectum, conservative management if possible). This potentially eliminates bias of comparing different situations, as is the case with population registries. :.(123456789 3 :.(123456789 3 References Ashraf SQ, Burns EM, Jani A, Altman S, Young JD, Cunningham C, et al. The economic impact of anastomotic leakage after anterior resec- tions in English NHS hospitals: are we adequately remunerating them? Colorectal Dis. 2013;15(4):e190–8.l g 27. Ashraf SQ, Burns EM, Jani A, Altman S, Young JD, Cunningham C, et al. The economic impact of anastomotic leakage after anterior resec- tions in English NHS hospitals: are we adequately remunerating them? Colorectal Dis. 2013;15(4):e190–8.l 28. Sibio S, Di Giorgio A, D’Ugo S, Palmieri G, Cinelli L, Formica V, Sensi B, Bagaglini G, Di Carlo S, Bellato V, Sica GS. Histotype influences emergency presentation and prognosis in colon cancer surgery. Langenbecks Arch Surg. 2019;404(7):841–51. https://​doi.​org/​10.​1007/​ s00423-​019-​01826-6.i 28. Sibio S, Di Giorgio A, D’Ugo S, Palmieri G, Cinelli L, Formica V, Sensi B, Bagaglini G, Di Carlo S, Bellato V, Sica GS. Histotype influences emergency presentation and prognosis in colon cancer surgery. Langenbecks Arch Surg. 2019;404(7):841–51. https://​doi.​org/​10.​1007/​ s00423-​019-​01826-6. 29. Sica GS, Fiorani C, Stolfi C, Monteleone G, Candi E, Amelio I, Catani V, Sibio S, Divizia A, Tema G, Iaculli E, Gaspari AL. Peritoneal expression of Matrilysin helps identify early post-operative recurrence of colorectal cancer. Oncotarget. 2015;6(15):13402–15. 29. Sica GS, Fiorani C, Stolfi C, Monteleone G, Candi E, Amelio I, Catani V, Sibio S, Divizia A, Tema G, Iaculli E, Gaspari AL. Peritoneal expression of Matrilysin helps identify early post-operative recurrence of colorectal cancer. Oncotarget. 2015;6(15):13402–15. 30. Spinelli A, Anania G, Arezzo A, Berti S, Bianco F, Bianchi PP, De Giuli M, De Nardi P, de Paolis P, Foppa C, Guerrieri M, Marini P, Persiani R, Piazza D, Poggioli G, Pucciarelli S, D’Ugo D, Renzi A, Selvaggi F, Silecchia G, Montorsi M. Italian multi-society modified Delphi consensus on the definition and management of anastomotic leakage in colorectal surgery. Updates Surg. 2020;72(3):781–92. https://​doi.​org/​10.​ 1007/​s13304-​020-​00837-z. 30. Spinelli A, Anania G, Arezzo A, Berti S, Bianco F, Bianchi PP, De Giuli M, De Nardi P, de Paolis P, Foppa C, Guerrieri M, Marini P, Persiani R, Piazza D, Poggioli G, Pucciarelli S, D’Ugo D, Renzi A, Selvaggi F, Silecchia G, Montorsi M. Italian multi-society modified Delphi consensus on the definition and management of anastomotic leakage in colorectal surgery. Updates Surg. 2020;72(3):781–92. https://​doi.​org/​10.​ 1007/​s13304-​020-​00837-z.ii 31. Horan TC, Andrus M, Dudeck MA. CDC/NHSN surveillance definition of health care–associated infection and criteria for specific types of infections in the acute care setting. Am J Infect Control. 2008;36(5):309–32.i 31. References Fast track surgery versus conventional recovery strategies for colorectal surgery. Cochrane Database Syst Rev. 2011. https://​doi.​org/​10.​1002/​14651​858.​CD007​635.​pub2. 19. Spanjersberg WR, Reurings J, Keus F, van Laarhoven CJ. Fast track surgery versus conventional recovery strategies for colorectal surgery. Cochrane Database Syst Rev. 2011. https://​doi.​org/​10.​1002/​14651​858.​CD007​635.​pub2. JK, Cima RR, et al. Outcomes after implementation of a multimodal standard care pathway for laparoscopic colore 2014;101:1023–30. 20. Larson DW, Lovely JK, Cima RR, et al. Outcomes after implementation of a multimodal standard care pathway surgery. Br J Surg. 2014;101:1023–30. g y g 21. Blumetti J, Abcarian H. Management of low colorectal anastomotic leak: Preserving the anastomosis. World J Gastrointest Surg. 2015;7:378–83. y 21. Blumetti J, Abcarian H. Management of low colorectal anastomotic leak: Preserving the anastomosis. World J Gastrointest Surg. 2015;7:378–83. 22. Buchs NC, Gervaz P, Secic M, et al. Incidence, consequences, and risk factors for anastomotic dehiscence after colorectal surgery: a pro- spective monocentric study. Int J Colorectal Dis. 2008;23:265–70. 22. Buchs NC, Gervaz P, Secic M, et al. Incidence, consequences, and risk factors for anastomotic dehiscence after colorectal surgery: a pro- spective monocentric study. Int J Colorectal Dis. 2008;23:265–70.f 23. Wang S, Liu J, Wang S, et al. Adverse effects of anastomotic leakage on local recurrence and survival after curative anterior resection for rectal cancer: a systematic review and meta-analysis. World J Surg. 2017;41(1):277–84. https://​doi.​org/​10.​1007/​s00268-​016-​3761-1. 23. Wang S, Liu J, Wang S, et al. Adverse effects of anastomotic leakage on local recurrence and survival after curative anterior resection for rectal cancer: a systematic review and meta-analysis. World J Surg. 2017;41(1):277–84. https://​doi.​org/​10.​1007/​s00268-​016-​3761-1. 24. Mongin C, Maggiori L, Agostini J, Ferron M, Panis Y. Does anastomotic leakage impair functional results and quality of life after laparoscopic sphincter-saving total mesorectal excision for rectal cancer? A case- matched study. Int J Colorectal Dis. 2014;29(4):459–67. https://​doi.​ org/​10.​1007/​s00384-​014-​1833-y. g y 25. Zhou X, Wang B, Li F, Wang J, Fu W. Risk factors associated with nonclosure of defunctioning stomas after sphinc resection of rectal cancer: a meta-analysis. Dis Colon Rectum. 2017;60(5):544–54. https://​doi.​org/​10.​1097/​DC 26. Hammond J, Lim S, Wan Y, Gao X, Patkar A. The burden of gastrointestinal anastomotic leaks: an evaluation of clinical and economic outcomes. J Gastrointest Surg. 2014;18(6):1176–85. 26. Hammond J, Lim S, Wan Y, Gao X, Patkar A. The burden of gastrointestinal anastomotic leaks: an evaluation of clinical and economic outcomes. J Gastrointest Surg. 2014;18(6):1176–85. g 27. References 1. Luft HS, Bunker JP, Enthoven AC. Should operations be regionalized? The empirical relation between surgical volume and mortality. N Engl J Med. 1979;301(25):1364–9. https://​doi.​org/​10.​1056/​NEJM1​97912​20301​2503. ; p g g 4. Tol JA, van Gulik TM, Busch OR, Gouma DJ. Centralization of highly complex low-volume procedures in upper gastrointestinal surgery. A summary of systematic reviews and meta-analyses. Dig Surg. 2012;29(5):374–83. y y y g g ; ( ) 5. Mo Gooiker GA, van Gijn W, Wouters MW, et al. Systematic review and meta-analysis of the volume-outcome relationship in pancreatic surgery. Br J Surg. 2011;98(4):485–94. (01231 3456789) 3 Research | https://doi.org/10.1007/s12672-021-00406-9 Discover Oncology Discover Oncology (2021) 12:11 6. Biancone L, Onali S, Calabrese C, Petruzziello C, Zorzi F, Condino G, Sica GS, Pallone F. Non-invasive techniques for assessing postoperative recurrence in Crohn’s disease. Dig Liver Dis. 2008;40(2):265–70. https://​doi.​org/​10.​1016/​S1590-​8658(08)​60536-​827. 6. Biancone L, Onali S, Calabrese C, Petruzziello C, Zorzi F, Condino G, Sica GS, Pallone F. Non-invasive techniques f recurrence in Crohn’s disease. Dig Liver Dis. 2008;40(2):265–70. https://​doi.​org/​10.​1016/​S1590-​8658(08)​6053 , Onali S, Calabrese C, Petruzziello C, Zorzi F, Condino G, Sica GS, Pallone F. Non-invasive techniques for assessing po , , , , , , , q g p in Crohn’s disease. Dig Liver Dis. 2008;40(2):265–70. https://​doi.​org/​10.​1016/​S1590-​8658(08)​60536-​827. g p g 7. Sica GS, Iaculli E, Biancone L, Di Carlo S, Scaramuzzo S, Fiorani C, Gentileschi P, Gaspari AL. Comparative study of laparoscopic vs open gastrectomy in gastric cancer management. World J Gastroenterol. 2011;17(41):4602–6. https://​doi.​org/​10.​3748/​wjg.​v17.​i41.​4602. 8. Collaborative EuroSurg. EuroSurg: a new European student-driven research network in surgery. Colorectal Dis. 2016;18(2):214–5. https://​ doi org/10 1111/codi 13260 g p g 7. Sica GS, Iaculli E, Biancone L, Di Carlo S, Scaramuzzo S, Fiorani C, Gentileschi P, Gaspari AL. Comparative study of laparoscopic vs open gastrectomy in gastric cancer management. World J Gastroenterol. 2011;17(41):4602–6. https://​doi.​org/​10.​3748/​wjg.​v17.​i41.​4602. 8. Collaborative EuroSurg. EuroSurg: a new European student-driven research network in surgery. Colorectal Dis. 2016;18(2):214–5. https://​ d i / / di g p g 7. Sica GS, Iaculli E, Biancone L, Di Carlo S, Scaramuzzo S, Fiorani C, Gentileschi P, Gaspari AL. Comparative study of laparoscopic vs open gastrectomy in gastric cancer management. World J Gastroenterol. 2011;17(41):4602–6. https://​doi.​org/​10.​3748/​wjg.​v17.​i41.​4602. g 9. Mole DJ. Parks RW (2012) Centralization of surgery for pancreatic cancer. In: Shrikhande SV, Büchler MW, editors. Surgery of pancreatic cancer: current issues. New Delhi: Elsevier; 2012. g 9. Mole DJ. Parks RW (2012) Centralization of surgery for pancreatic cancer. References In: Shrikhande SV, Büchler MW, editors. Surgery of pancreatic cancer: current issues. New Delhi: Elsevier; 2012. 10. Varagunam M, Hardwick R, Riley S, et al. Changes in volume, clinical practice and outcome after reorganisation of oesophago-gastric cancer care in England: a longitudinal observational study. Eur J Surg Oncol. 2018;44(4):524–31. l h d k l d l 10. Varagunam M, Hardwick R, Riley S, et al. Changes in volume, clinical practice and outcome after reorganisation of oesophago-gastric cancer care in England: a longitudinal observational study. Eur J Surg Oncol. 2018;44(4):524–31. n R, Lodge P, Barkun JS, et al. Toward a consensus on centralization in surgery. Ann Surg. 2018;268(5):712–24. 11. Vonlanthen R, Lodge P, Barkun JS, et al. Toward a consensus on centralization in surgery. Ann Surg. 20 g g y g 12. National Guideline Alliance part of the Royal College of Obstetricians and Gynaecologists (UK). Surgical volumes and outcomes for rectal cancer: colorectal cancer (update): Evidence review F1. London: National Institute for Health and Care Excellence (UK); 2020. y 12. National Guideline Alliance part of the Royal College of Obstetricians and Gynaecologists (UK). Surgical volumes and outcomes for rectal cancer: colorectal cancer (update): Evidence review F1. London: National Institute for Health and Care Excellence (UK); 2020. l k ll f ld l d l h ff h l 12. National Guideline Alliance part of the Royal College of Obstetricians and Gynaecologists (UK). Surgical volumes and outcomes for rectal cancer: colorectal cancer (update): Evidence review F1. London: National Institute for Health and Care Excellence (UK); 2020. 13. Fleissig A, Jenkins V, Catt S, Fallowfield L. Multidisciplinary teams in cancer care: are they effective in the UK? Lancet Oncol. 2006;7(11):935–43. https://​doi.​org/​10.​1016/​S1470-​2045(06)​70940-8. 12. National Guideline Alliance part of the Royal College of Obstetricians and Gynaecologists (UK). Surgical volumes and outcomes for rectal cancer: colorectal cancer (update): Evidence review F1. London: National Institute for Health and Care Excellence (UK); 2020. 13. Fleissig A, Jenkins V, Catt S, Fallowfield L. Multidisciplinary teams in cancer care: are they effective in the UK? Lancet Oncol. 2006;7(11):935–43. https://​doi.​org/​10.​1016/​S1470-​2045(06)​70940-8. 13. Fleissig A, Jenkins V, Catt S, Fallowfield L. Multidisciplinary teams in cancer care: are they effect 2006;7(11):935–43. https://​doi.​org/​10.​1016/​S1470-​2045(06)​70940-8. 13. Fleissig A, Jenkins V, Catt S, Fallowfield L. Multidisciplinary teams in cancer care: are they effective in the UK? Lancet Oncol. 2006;7(11):935–43. https://​doi.​org/​10.​1016/​S1470-​2045(06)​70940-8. 14. Bonjer HJ, Deijen CL, Abis GA, et al. References A randomized trial of laparoscopic versus open surgery for rectal cancer. N Engl J Med. 2015;372:1324–32. 14. Bonjer HJ, Deijen CL, Abis GA, et al. A randomized trial of laparoscopic versus open surgery for rectal cancer. N Engl J Med. 2015;372:1324–32. 15. Van der Pas MH, Haglind E, Cuesta MA, et al.; COlorectal cancer Laparoscopic or Open Resection II (COLOR II) Study Group. Laparo- scopic versus open surgery for rectal cancer (COLOR II): short-term outcomes of a randomised, phase 3 trial. Lancet Oncol 2013; 14: 210–218. 15. Van der Pas MH, Haglind E, Cuesta MA, et al.; COlorectal cancer Laparoscopic or Open Resection II (COLOR II) Study Group. Laparo- scopic versus open surgery for rectal cancer (COLOR II): short-term outcomes of a randomised, phase 3 trial. Lancet Oncol 2013; 14: 210–218. 16. Fleshman J, Branda ME, Sargent DJ, Boller AM, George VV, Abbas MA et al. Disease-free survival and local recurrence for laparoscopic resection compared with open resection of stage II to III rectal cancer: follow-up results of the ACOSOG Z6051 randomized controlled trial. Ann Surg. 2019;269(4):589–95. 16. Fleshman J, Branda ME, Sargent DJ, Boller AM, George VV, Abbas MA et al. Disease-free survival and local recurrence for laparoscopic resection compared with open resection of stage II to III rectal cancer: follow-up results of the ACOSOG Z6051 randomized controlled trial. Ann Surg. 2019;269(4):589–95. g 17. Tesauro M, Guida AM, Siragusa L, Sensi B, Bellato V, Di Daniele N, Divizia A, Franceschilli M, Sica GS. Preoperative immunonutrition vs standard dietary advice in normo-nourished patients undergoing fast-track laparoscopic colorectal surgery. J Clin Med. 2021;10(3):413. https://​doi.​org/​10.​3390/​jcm10​030413. g 17. Tesauro M, Guida AM, Siragusa L, Sensi B, Bellato V, Di Daniele N, Divizia A, Franceschilli M, Sica GS. Preoperative immunonutrition vs standard dietary advice in normo-nourished patients undergoing fast-track laparoscopic colorectal surgery. J Clin Med. 2021;10(3):413. https://​doi.​org/​10.​3390/​jcm10​030413. p g j 18. Sica GS, Campanelli M, Bellato V, Monteleone G. Gastrointestinal cancer surgery and enhanced recovery after surgery (ERAS) during COVID-19 outbreak. Langenbecks Arch Surg. 2020. https://​doi.​org/​10.​1007/​s00423-​020-​01885-0. p g j 18. Sica GS, Campanelli M, Bellato V, Monteleone G. Gastrointestinal cancer surgery and enhanced recovery after surgery (ERAS) during COVID-19 outbreak. Langenbecks Arch Surg. 2020. https://​doi.​org/​10.​1007/​s00423-​020-​01885-0. 19. Spanjersberg WR, Reurings J, Keus F, van Laarhoven CJ. Fast track surgery versus conventiona Cochrane Database Syst Rev. 2011. https://​doi.​org/​10.​1002/​14651​858.​CD007​635.​pub2. 19. Spanjersberg WR, Reurings J, Keus F, van Laarhoven CJ. References 2017;8(3):534–46. g y 38. Jonker FHW, Hagemans JAW, Verhoef C, Burger JWA. The impact of hospital volume on perioperative ou Surg Oncol. 2017;43(10):1894–900. https://​doi.​org/​10.​1016/j.​ejso.​2017.​07.​009. g p g j j 39. El Amrani M, Clement G, Lenne X, et al. The impact of hospital volume and Charlson score on postoperative mortality of proctectomy for rectal cancer: a nationwide study of 45,569 patients. Ann Surg. 2018;268(5):854–60. g p g j j 39. El Amrani M, Clement G, Lenne X, et al. The impact of hospital volume and Charlson score on postoperative mortality of proctectomy for rectal cancer: a nationwide study of 45,569 patients. Ann Surg. 2018;268(5):854–60. g p g j j 39. El Amrani M, Clement G, Lenne X, et al. The impact of hospital volume and Charlson score on postoperative mortality of proctectomy for rectal cancer: a nationwide study of 45,569 patients. Ann Surg. 2018;268(5):854–60. wide study of 45,569 patients. Ann Surg. 2018;268(5):854– 40. Burns EM, Bottle A, Almoudaris AM, et al. Hierarchical multilevel analysis of increased caseload volume and postoperative outcome after elective colorectal surgery. Br J Surg. 2013;100(11):1531–8.i 40. Burns EM, Bottle A, Almoudaris AM, et al. Hierarchical multilevel analysis of increased caseload volume and postoperative outcome after elective colorectal surgery. Br J Surg. 2013;100(11):1531–8.i g y g 41. Mammi C, Pastore D, Lombardo MF, et al. Sildenafil reduces insulin-resistance in human endothelial cells D. PLoS ONE. 2011;6(1):e14542. 42. Bellia A, Rizza S, Galli A, et al. Early vascular and metabolic effects of rosuvastatin compared with simvastatin in patients with type 2 diabetes. D Atherosclerosis. 2010;210(1):199–201. g y g 41. Mammi C, Pastore D, Lombardo MF, et al. Sildenafil reduces insulin-resistance in human endothelial cells D 41. Mammi C, Pastore D, Lombardo MF, et al. Sildenafil reduces insulin-resistance in human endothelial cells D. PLoS ONE. 2011;6(1):e14542. 42. Bellia A, Rizza S, Galli A, et al. Early vascular and metabolic effects of rosuvastatin compared with simvastatin in patients with type 2 diabetes. D Atherosclerosis. 2010;210(1):199–201. 42. Bellia A, Rizza S, Galli A, et al. Early vascular and metabolic effects of rosuvastatin compared with simvastatin in patients with type 2 diabetes. D Atherosclerosis. 2010;210(1):199–201. 43. Simillis C, Lal N, Thoukididou SN, Kontovounisios C, Smith JJ, Hompes R, Adamina M, Tekkis PP. Open versus laparoscopic versus robotic versus transanal mesorectal excision for rectal cancer: a systematic review and network meta-analysis. Ann Surg. 2019;270(1):59–68. https://​doi.​org/​10.​1097/​SLA.​00000​00000​003227.l 43. References Franzè E, Dinallo V, Rizzo A, Di Giovangiulio M, Bevivino G, Stolfi C, Caprioli F, Colantoni A, Ortenzi A, Di Grazia A, Sica G, Sileri P, Rossi P, Monteleone G. Interleukin-34 sustains pro-tumorigenic signals in colon cancer tissue. Oncotarget. 2018;9(3):3432–45.i p g g g 49. Franzè E, Marafini I, De Simone V, Monteleone I, Caprioli F, Colantoni A, Ortenzi A, Crescenzi F, Izzo R, Sica G, Sileri P, Rossi P, Pallone F, Monteleone G. Interleukin-34 induces Cc-chemokine ligand 20 in gut epithelial cells. J Crohns Colitis. 2016;10(1):87–94. https://​doi.​org/​ 10.​1093/​ecco-​jcc/​jjv181. 49. Franzè E, Marafini I, De Simone V, Monteleone I, Caprioli F, Colantoni A, Ortenzi A, Crescenzi F, Izzo R, Sica G, Sileri P, Rossi P, Pallone F, Monteleone G. Interleukin-34 induces Cc-chemokine ligand 20 in gut epithelial cells. J Crohns Colitis. 2016;10(1):87–94. https://​doi.​org/​ 10.​1093/​ecco-​jcc/​jjv181. j jj 50. De Simone V, Ronchetti G, Franzè E, Colantoni A, Ortenzi A, Fantini MC, Rizzo A, Sica GS, Sileri P, Rossi P, MacDonald TT, Pallone F, Monteleone G, Stolfi C. Interleukin-21 sustains inflammatory signals that contribute to sporadic colon tumorigenesis. Oncotarget. 2015;6(12):9908–23. W i KN O M V K h JAM l L l i l f ll i i f l I J C l j jj 50. De Simone V, Ronchetti G, Franzè E, Colantoni A, Ortenzi A, Fantini MC, Rizzo A, Sica GS, Sileri P, Rossi P, MacDonald TT, Pallone F, Monteleone G, Stolfi C. Interleukin-21 sustains inflammatory signals that contribute to sporadic colon tumorigenesis. Oncotarget. 2015;6(12):9908–23. 51. Wanis KN, Ott M, Van Koughnett JAM, et al. Long-term oncological outcomes following emergency resection of colon cancer. Int J Color Dis. 2018;33(11):1525–32. j jj 50. De Simone V, Ronchetti G, Franzè E, Colantoni A, Ortenzi A, Fantini MC, Rizzo A, Sica GS, Sileri P, Rossi P, MacDonald TT, Pallone F, Monteleone G, Stolfi C. Interleukin-21 sustains inflammatory signals that contribute to sporadic colon tumorigenesis. Oncotarget. 2015;6(12):9908–23. 51. Wanis KN, Ott M, Van Koughnett JAM, et al. Long-term oncological outcomes following emergency resection of colon cancer. Int J Color Dis. 2018;33(11):1525–32. 51. Wanis KN, Ott M, Van Koughnett JAM, et al. Long-term oncological outcomes following emergency resect Dis. 2018;33(11):1525–32. 52. Aquina CT, Probst CP, Becerra AZ, et al. High volume improves outcomes: the argument for centralization of rectal cancer surgery. Surgery. 2016;159(3):736–48. 52. Aquina CT, Probst CP, Becerra AZ, et al. High volume improves outcomes: the argument for centralization of rectal cancer surgery. References Horan TC, Andrus M, Dudeck MA. CDC/NHSN surveillance definition of health care–associated infection and criteria for specific types of infections in the acute care setting. Am J Infect Control. 2008;36(5):309–32.i g 32. Dindo D, Demartines N, Clavien PA. Classification of surgical complications: a new proposal with evaluation in a cohort of 6336 patients and results of a survey. Ann Surg. 2004;240(2):205–13. 32. Dindo D, Demartines N, Clavien PA. Classification of surgical complications: a new proposal with evaluation in a cohort of 6336 patients and results of a survey. Ann Surg. 2004;240(2):205–13. y g 33. Gustafsson UO, Scott MJ, Schwenk W, et al. Guidelines for perioperative care in elective colonic surgery: Enhanced Recovery After Surgery (ERAS®) Society recommendations. Clin Nutr. 2012;31(6):783–800. https://​doi.​org/​10.​1016/j.​clnu.​2012.​08.​013.i y g 33. Gustafsson UO, Scott MJ, Schwenk W, et al. Guidelines for perioperative care in elective colonic surgery: Enhanced Recovery After Surgery (ERAS®) Society recommendations. Clin Nutr. 2012;31(6):783–800. https://​doi.​org/​10.​1016/j.​clnu.​2012.​08.​013.i y g j 34. DʼSouza N, De Neree Tot Babberich MPM, D’hoore A et al. Definition of the rectum: an international, exper Surg. 2019;270(6):955-959. doi: https://​doi.​org/​10.​1097/​SLA.​00000​00000​003251.i ee Tot Babberich MPM, D’hoore A et al. Definition of the rectum: an international, expert-based delphi consensus. 955-959. doi: https://​doi.​org/​10.​1097/​SLA.​00000​00000​003251.i g p g 35. Rahbari NN, Weitz J, Hohenberger W, et al. Definition and grading of anastomotic leakage following anterior resection of the rectum: a proposal by the International Study Group of Rectal Cancer. Surgery. 2010;147:339–51. g g 35. Rahbari NN, Weitz J, Hohenberger W, et al. Definition and grading of anastomotic leakage following anterior resection of the rectum: a proposal by the International Study Group of Rectal Cancer. Surgery. 2010;147:339–51. Vol:1 :.(12345678 3 Discover Oncology | https://doi.org/10.1007/s12672-021-00406-9 Research Discover Oncology (2021) 12:11 (2021) 12:11 36. Von Elm E, Altman DG, Egger M, et al. The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies. Bull World Health Organ. 2007;85(11):867–72. https://​doi.​org/​10.​2471/​blt.​07.​045120. 37 Huo YR Phan K Morris DL Liauw W Systematic review and a meta-analysis of hospital and surgeon volume/outcome relationships in 36. Von Elm E, Altman DG, Egger M, et al. The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies. Bull World Health Organ. 2007;85(11):867–72. https://​doi.​org/​10.​2471/​blt.​07.​045120. g p g g p g 37. Huo YR, Phan K, Morris DL, Liauw W. Systematic review and a meta-analysis of hospital and surgeon volume/outcome relationships in colorectal cancer surgery. J Gastrointest Oncol. References Simillis C, Lal N, Thoukididou SN, Kontovounisios C, Smith JJ, Hompes R, Adamina M, Tekkis PP. Open versus laparoscopic versus robotic versus transanal mesorectal excision for rectal cancer: a systematic review and network meta-analysis. Ann Surg. 2019;270(1):59–68. https://​doi.​org/​10.​1097/​SLA.​00000​00000​003227.l p g 44. Song M, Liu J, Xia D, Yao H, Tian G, Chen X, Liu Y, Jiang Y, Li Z. Assessment of intraoperative use of indocyanine green fluorescence imag- ing on the incidence of anastomotic leakage after rectal cancer surgery: a PRISMA-compliant systematic review and meta-analysis. Tech Coloproctol. 2020. https://​doi.​org/​10.​1007/​s10151-​020-​02335-1. 44. Song M, Liu J, Xia D, Yao H, Tian G, Chen X, Liu Y, Jiang Y, Li Z. Assessment of intraoperative use of indocyanine green fluorescence imag- ing on the incidence of anastomotic leakage after rectal cancer surgery: a PRISMA-compliant systematic review and meta-analysis. Tech Coloproctol. 2020. https://​doi.​org/​10.​1007/​s10151-​020-​02335-1. p p g 45. Italian ColoRectal Anastomotic Leakage (iCral) study group. Colorectal surgery in Italy: a snapshot from the iCral study group. Updates Surg. 2019;71(2):339–47. https://​doi.​org/​10.​1007/​s13304-​018-​00612-1. p p g 45. Italian ColoRectal Anastomotic Leakage (iCral) study group. Colorectal surgery in Italy: a snapshot from the iCral study group. Updates Surg. 2019;71(2):339–47. https://​doi.​org/​10.​1007/​s13304-​018-​00612-1. g p g 46. McDermott FD, Heeney A, Kelly ME, Steele RJ, Carlson GL, Winter DC. Systematic review of preoperative, intraoperative and postoperative risk factors for colorectal anastomotic leaks. Br J Surg. 2015;102(5):462–79. https://​doi.​org/​10.​1002/​bjs.​9697. g g 46. McDermott FD, Heeney A, Kelly ME, Steele RJ, Carlson GL, Winter DC. Systematic review of preoperative, intraoperative and postoperative risk factors for colorectal anastomotic leaks. Br J Surg. 2015;102(5):462–79. https://​doi.​org/​10.​1002/​bjs.​9697. 47. Borstlap WAA, Westerduin E, Aukema TS, Bemelman WA, Tanis PJ, Dutch Snapshot Research Group. Anastomotic leakage and chronic presacral sinus formation after low anterior resection: results from a large cross- sectional study. Ann Surg. 2017;266(5):870–7. https://​ doi.​org/​10.​1097/​SLA.​00000​00000​002429. 47. Borstlap WAA, Westerduin E, Aukema TS, Bemelman WA, Tanis PJ, Dutch Snapshot Research Group. Anastomotic leakage and chronic presacral sinus formation after low anterior resection: results from a large cross- sectional study. Ann Surg. 2017;266(5):870–7. https://​ doi.​org/​10.​1097/​SLA.​00000​00000​002429. g 48. Franzè E, Dinallo V, Rizzo A, Di Giovangiulio M, Bevivino G, Stolfi C, Caprioli F, Colantoni A, Ortenzi A, Di Grazia A, Sica G, Sileri P, Rossi P, Monteleone G. Interleukin-34 sustains pro-tumorigenic signals in colon cancer tissue. Oncotarget. 2018;9(3):3432–45. g 48. References Surgery. 2016;159(3):736–48. ; ( ) 53. Baek JH, Alrubaie A, Guzman EA, et al. The association of hospital volume with rectal cancer surgery outcomes. Int J Color Dis. 2013;28(2):191–6. 53. Baek JH, Alrubaie A, Guzman EA, et al. The association of hospital volume with rectal cancer surgery outcomes. Int J Color Dis. 2013;28(2):191–6. 54. Standardization of multidisciplinary cancer care in the Netherlands, SONCOS standardization report 5. 2017;22–26. https://​www.​soncos.​ org/​wpcon​tent/​uploa​ds/​2017/​10/​46SON​COS-​stand​ardis​ation-​report.​pdf. 54. Standardization of multidisciplinary cancer care in the Netherlands, SONCOS standardization report 5. 2017;22–26. https://​www.​soncos.​ org/​wpcon​tent/​uploa​ds/​2017/​10/​46SON​COS-​stand​ardis​ation-​report.​pdf.f 55. Burke JP, Coffey JC, Boyle E, et al. Early outcomes for rectal cancer surgery in the republic of Ireland follo program. Ann Surg Oncol. 2013;20:3414–21.f p g g 56. Jannasch O, Udelnow A, Wolff S, et al. German bowel cancer center: an attempt to improve treatment quality. Gastroenterol Res Pract. 2015;2015:456476. 56. Jannasch O, Udelnow A, Wolff S, et al. German bowel cancer center: an attempt to improve treatment quality. Gastroenterol Res Pract. 2015;2015:456476. ; 57. Khani MH, Smedh K. Centralization of rectal cancer surgery improves long- term survival. Colorectal Dis. 2010;12:874–9. ; 57. Khani MH, Smedh K. Centralization of rectal cancer surgery improves long- term survival. Colorectal Dis. 2 57. Khani MH, Smedh K. Centralization of rectal cancer surgery improves long- term survival. Colorectal Dis. 2010;12:874–9. d h l h l l l l h h l f l d l l d 58. Prades J, Manchon-Walsh P, Sola J, et al. Improving clinical outcomes through centralization of rectal canc mixed-methods assessment. Eur J Public Health. 2016;26:538–42.f 59. van Erning FN, van Steenbergen LN, van den Broek WT, Rutten HJ, Lemmens VE. No difference between lowest and highest volume hospitals in outcome after colorectal cancer surgery in the southern Netherlands. Eur J Surg Oncol. 2013;39(11):1199–206. https://​doi.​ org/​10.​1016/j.​ejso.​2013.​08.​020. 59. van Erning FN, van Steenbergen LN, van den Broek WT, Rutten HJ, Lemmens VE. No difference between lowest and highest volume hospitals in outcome after colorectal cancer surgery in the southern Netherlands. Eur J Surg Oncol. 2013;39(11):1199–206. https://​doi.​ org/​10.​1016/j.​ejso.​2013.​08.​020. g j j 60. Archampong D, Borowski D, Wille-Jørgensen P, Iversen LH. Workload and surgeon’s specialty for outcome after colorectal cancer surgery. Cochrane Database Syst Rev. 2012;3:CD005391. g j j 60. Archampong D, Borowski D, Wille-Jørgensen P, Iversen LH. Workload and surgeon’s specialty for outcome after colorectal cancer surgery. Cochrane Database Syst Rev. 2012;3:CD005391. y 61. Morino M, Spinelli A, Allaix ME. References Volume-outcome relationship in colorectal surgery. In: Montorsi M, editor. Volume-outcome relationship in oncological surgery. Updates in surgery. Cham: Springer; 2021. y 61. Morino M, Spinelli A, Allaix ME. Volume-outcome relationship in colorectal surgery. In: Montorsi M, editor. Volume-outcome relationship in oncological surgery. Updates in surgery. Cham: Springer; 2021. 62. Shah PM, Johnston L, Sarosiek B, et al. Reducing readmissions while shortening length of stay: the positive impact of an enhanced recovery protocol in colorectal surgery. Dis Colon Rectum. 2017;60:219–27. 62. Shah PM, Johnston L, Sarosiek B, et al. Reducing readmissions while shortening length of stay: the positive impact of an enhanced recovery protocol in colorectal surgery. Dis Colon Rectum. 2017;60:219–27. 63. Thiele RH, Rea KM, Turrentine FE, et al. Standardization of care: impact of an enhanced recovery protocol on length of stay, complications, and direct costs after colorectal surgery. J Am Coll Surg. 2015;220:430–43. 64 B G Ri h d L Sh tt A Ch HS A h d d l th f t ft l t l I t J C l 63. Thiele RH, Rea KM, Turrentine FE, et al. Standardization of care: impact of an enhanced recovery protocol on len and direct costs after colorectal surgery. J Am Coll Surg. 2015;220:430–43. 64. Branagan G, Richardson L, Shetty A, Chave HS. An enhanced recovery program reduces length of stay after c Dis. 2010;25:1359–62. 65. Khreiss W, Huebner M, Cima RR, Dozois ER, Chua HK, Pemberton JH, Harmsen WS, Larson DW. Improving conventional recovery with enhanced recovery in minimally invasive surgery for rectal cancer. Dis Colon Rectum. 2014;57(5):557–63. https://​doi.​org/​10.​1097/​DCR.​ 00000​00000​000101. 66. Vlug MS, Wind J, Bemelman WA, et al. Laparoscopy in combination with fast track multimodal management is the best perioperative strategy in patients undergoing colonic surgery (LAFA study). Ann Surg. 2011;254:868–75. 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Two-Way Multiple Relays Channel: Achievable Rate Region and Optimal Resources
Advances in electrical and electronic engineering/Advances in Electrical and Electronic Engineering
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INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES DOI: 10.15598/aeee.v14i3.1646 Abstract. This paper considers a communication model containing two users that exchange their infor- mation with the help of multiple parallel relay nodes. To avoid interference at these common nodes, two users are required to transmit over the different fre- quency bands. Based on this scenario, the achievable rate region is initially derived. Next, an optimization scheme is described to choose the best relays that can be used by each user. Then, two power allocation opti- mization schemes are investigated to allocate the proper average power value to each node. Finally, compar- isons between these two optimization schemes are car- ried out through some numerical examples. niques have been studied. These encoding schemes include Decode-and-Forward (DF) [2] and [3], Partial Decode-and-Forward (PDF) [4] and Amplify-and For- ward (AF) scheme [5] and [6]. For practical purposes, a relay channel with orthogonal channel components was studied in [7], [8] and [9]. The motivation beyond this scheme is that a relay cannot simultaneously receive and transmit over the same frequency band. Recent studies show that a bidirectional relay node may be used to increase the spectrum efficiency. In this channel model, a relay node can be used to help two users in exchanging their information. This Two-Way Relay Channel (TWRC) was extensively addressed in many different scenarios [10], [11], [12], [13], [14], and [15]. For instance, the achievable rate region was considered in [10], [11] and [12], an efficient compute and forward scheme was investigated in [15], and an AF encoding scheme was examined in [5]. Further, performance of this TWRC was studied in [13] and [16] for the case that Orthogonal Frequency Division Mul- tiplexing (OFDM) is employed by both of the users. In addition, TWRC with multiple parallel relays has been investigated from various aspects like beamform- ing [17], and diversity analysis [18] and [19]. Keywords Channel capacity, decode and forward, power allocation, two-way relay channel. Channel capacity, decode and forward, power allocation, two-way relay channel. Two-Way Multiple Relays Channel: Achievable Rate Region and Optimal Resources Zouhair AL-QUDAH 1, Wael Abu SHEHAB 2 1Department of Communication Engineering, College of Engineering, Al-Hussein Bin Talal University, Ma’an 71111, Jordan 2Department of Electrical Engineering, College of Engineering, Al-Hussein Bin Talal University, Ma’an 71111, Jordan qudahz@ahu.edu.jo, waelabushehab@ahu.edu.jo DOI: 10.15598/aeee.v14i3.1646 1. Introduction Relaying has a major role in extending and/or improv- ing the performance of wireless networks. In its sim- plest form, the relay channel, which is mainly com- posed of a source transmitting to its destination with assistance of a relay node, was initially proposed by van der Meulen in his seminal work [1]. Since then, this channel model has been received an extensive in- vestigation in both theory and practice. From an infor- mation theory perspective, the achievable rate of the physically degraded relay channel was studied in [2]. Further, based on the channel’s gain from the source and the relay to the destination, various encoding tech- This paper considers the TWRC with multiple par- allel relays and orthogonal channel components, as shown in Fig. 1. This channel model consists of two users want to exchange their information via the help of multiple parallel relays. This communication sce- nario may model two users want to communicate with the help of common node(s) such as access point(s). In order to avoid interference between the two users’ signals at each relay, the users are required to transmit over channels with different frequency bands. First, the achievable rate region is derived using full DF at all relays. Next, an optimization scheme is described to c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 279 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER D SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES with different frequency bands, to all the relays. Thus, for a given relay, the received signal, YiRj, is given by with different frequency bands, to all the relays. Thus, for a given relay, the received signal, YiRj, is given by select the best two relays to forward the two users’ sig- nals to their destination. Then, based on whether these relays can cooperate to form a Multiple Input Single Output (MISO) channel with each destination or not, two power allocation schemes are distinguished and in- vestigated. These power allocation schemes are used to allocate the optimal power values at both source nodes and the selected relays such as the sum rate is maxi- mized under the fairness constraint. Afterwards, some numerical examples are discussed to show the impor- tance of our theoretical work. YiRj = L X j=1 hiRjXi + ZiRj, (1) (1) where hiRj is the channel gain from user Ui, i ∈{1, 2}, to relay Rj, j ∈[1, L], and L is the number of used relays. Further, the noise signal ZiRj is assumed to be Gaussian noise with 0 mean and variance normalized to 1. Indeed, the average transmit power, Pi, at each source is limited by Fig. 1: TWRC with multiple relays. Different link formats are given to represent channels with different frequency bands. 1 n n X k=1 X2 i,k ≤Pi. (2) (2) In the second step, each relay forward the two users’ signals to their destinations. Since multiple relays can forward each user’s signal, thus, a multiple access chan- nel (MAC) is formed. Therefore, the received signal Yi, i ∈{1, 2}, at each destination is expressed as Fig. 1: TWRC with multiple relays. Different link formats are given to represent channels with different frequency bands. Yi = L X j=1 hRjiXRji + Zi, (3) (3) The rest of this paper is organized as follows. The communication model that we study in this paper is introduced in Section 2. Next, the achievable rate region of the TWRC with multiple relays and orthog- onal channel components is characterized in Section 3. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING Then, for a given user, the best relay to use and the optimum power allocation that maximize the sum rate are investigated in Section 4. Numerical results are presented in Section 5. Finally, we conclude the paper in Section 6. where hRji is the channel gain from a relay Rj to des- tination Ui. In addition, for instance, XRj2, j ∈[1, L], is the signal forwarded to the destination U2 and it is a function of X1, i.e. XRj2 = f(X1), and with average power PRj2 given by 1 n n X k=1 X2 Rj2,k ≤PRj2. (4) (4) 2. TWRC: Channel Model Moreover, the noise signal Zi is assumed to be Gaus- sian noise with 0 mean and variance normalized to 1. Since the BC term is performed over n uses of the chan- nel, and the MAC term is also performed over another n uses of the channel, the transmission from a given source to its destination is performed over 2n uses of the channel. Moreover, the noise signal Zi is assumed to be Gaus- sian noise with 0 mean and variance normalized to 1. Moreover, the noise signal Zi is assumed to be Gaus- sian noise with 0 mean and variance normalized to 1. Since the BC term is performed over n uses of the chan- nel, and the MAC term is also performed over another n uses of the channel, the transmission from a given source to its destination is performed over 2n uses of the channel. In this Section, the communication model, as shown in Fig. 1. is presented. This model consists of two users, which want to exchange their information, and multiple parallel relay nodes. In order to avoid interference between the two user’s signals at each re- lay, the relays are assumed to operate over multiple frequency bands with multi-standards. These relays can decode and then forward the two users’ signals to their destinations. Also, in this case, the relays are assumed to forward the signals over channels with dif- ferent frequency bands. This selection can simplify the transmissions and also optimize the available power be- tween the two users. In addition, data transferring is performed over 2n of the channel uses, In particular, n uses of the channel are consumed in the broadcast phase, and another n uses of the channel are employed in the multiple access phase. In the first step, each user broadcasts (BC) its signal Xi, i ∈{1, 2}, over channels 3. Achievable Rate Region In this Section, the achievable rate region of the TWRC, which is augmented by multiple parallel re- lays, is derived. The transmission is composed of two phases. In the first phase, the users broadcast to the re- lays. Then, in the second phase, the relays forward the decoded messages to their destinations. The achievable rates and the transmission phase are introduced in the following Thm. 1. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 280 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER FORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES Theorem 1. The achievable rate region of the TWRC with multiple parallel relay nodes is given by Theorem 1. The achievable rate region of the TWRC with multiple parallel relay nodes is given by where I(.) is the mutual information, and h(.) is the differential entropy. Remember that the noise variance over all channels is normalized to 1. Also the second user’s signal is received by all the relays. We remind that the relays can receive signals over different fre- quency bands. Thus, in the BC phase, the achievable rate for user U2 can be expressed by R1 = 1 2 max min   L X j=1 C |h1Rj|2P1  , C (A1)  , (5) R2 = 1 2 max min   L X j=1 C |h2Rj|2P2  , C (A2)  , (6) RBC,2 ≤ L X j=1 1 2 log2 1 + |h2Rj|2P2  . (12) (12) where where A1 =   L X j=1 |hRj2| q PRj2   2 = L X j=1 |hRj2|2PRj2 (7) + L X j=1 L X v=j+1 2ρjv|hRj2||hRv2| q PRj2PRv2, A2 =   L X j=1 |hRj1| q PRj1   2 = L X j=1 |hRj1|2PRj1 (8) + L X j=1 L X v=j+1 2ρjv|hRj1||hRv1| q PRj1PRv1, Fig. 2: Broadcast Phase. Different frequency bands are used to transmit to the relays. (7) Fig. 2: Broadcast Phase. Different frequency bands are used to transmit to the relays. (8) At the end of this phase, the relays can decode the users’ signals. Then, in the second phase, the relays can forward each signal to its destination. 3. Achievable Rate Region RBC,1 = I (X1; Y1R1, · · · , Y1RL) = h (Y1R1, · · · , Y1RL) −h (Y1R1, · · · , Y1RL|X1) = h (Y1R1, · · · , Y1RL) −h (Z1R1, · · · , Z1RL) = h (Y1R1, · · · , Y1RL) − L X j=1 h(Z1Rj) (11) ≤ L X j=1 h(Y1Rj) −h(Z1Rj) ≤ L X j=1 1 2 log2 1 + |h1Rj|2P1  , Fig. 3: Multiple Access Phase. Different frequency bands are used to transmit to the destinations. RBC,1 = I (X1; Y1R1, · · · , Y1RL) = h (Y1R1, · · · , Y1RL) −h (Y1R1, · · · , Y1RL|X1) = h (Y1R1, · · · , Y1RL) −h (Z1R1, · · · , Z1RL) = h (Y1R1, · · · , Y1RL) − L X j=1 h(Z1Rj) (11) ≤ L X j=1 h(Y1Rj) −h(Z1Rj) ≤ L X j=1 1 2 log2 1 + |h1Rj|2P1  , (11) Fig. 3: Multiple Access Phase. Different frequency bands are used to transmit to the destinations. Fig. 3: Multiple Access Phase. Different frequency bands are used to transmit to the destinations. 3. Achievable Rate Region Thus, the trans- mission from all relays to a given destination forms a MAC channel, as depicted in Fig. 3. For instance, the achievable rate of DF X1 to its destination U2, in the MAC phase, can be expressed as: E  XRjiXRvi  = ρjv|hRji||hRvi| q PRjiPRvi, (9) C(x) = 1 2 log2 (1 + x) , (10) (9) RMAC,1 = I Y2; XR12, · · · , XRj2  = h (Y2) −h Y2|XR12, · · · , XRj2  = h (Y2) −h (Z2) (13) = 1 2 log2 (1 + A1) , (10) and ρjv is the cross-correlation between the signals for- warded by the relays j and v, respectively. In addition, E[.] denotes the expectation. (13) where A1 is the total signal-to-noise ratio from all re- lays to the destination U2, in the MAC phase, and is already defined in the previous theorem. Moreover, similar results can be obtained from decode and then forward X2 to its destination U1. where A1 is the total signal-to-noise ratio from all re- lays to the destination U2, in the MAC phase, and is already defined in the previous theorem. Moreover, similar results can be obtained from decode and then forward X2 to its destination U1. Proof. The transmission from a given source to its des- tination consists of two phases, the BC phase, and the MAC phase. In the BC phase, as seen in Fig. 2, a source broadcasts its signal into multiple parallel re- lays. This transmission is equivalent to that over par- allel Gaussian channel [20]. Thus, the achievable rate, for user U1, in the BC phase, can be expressed by: RBC,1 = I (X1; Y1R1, · · · , Y1RL) = h (Y1R1, · · · , Y1RL) −h (Y1R1, · · · , Y1RL|X1) = h (Y1R1, · · · , Y1RL) −h (Z1R1, · · · , Z1RL) = h (Y1R1, · · · , Y1RL) − L X j=1 h(Z1Rj) (11) ≤ L X j=1 h(Y1Rj) −h(Z1Rj) ≤ L X j=1 1 2 log2 1 + |h1Rj|2P1  , Fig. 3: Multiple Access Phase. Different frequency bands are used to transmit to the destinations. 4. Optimal Power Allocation Now based on the ability of the relays to cooperate, two transmission schemes are developed. In the case of cooperation, these relays can form a sender with two transmit antennas. Hence, Multiple Input Single Output (MISO) channel with two transmit antennas and one receive antenna is formed. When there is no cooperation, the relays are considered as two separate users transmitting to a given receiver to form a MAC channel. Based on these two cases, the achievable sum rate is studied in the next two Subsections. In this Section, power allocation techniques, which are used to distribute the available total power among the two sources and the relays, are studied. In particular, the power is allocated such that the two users have the same data rate. To understand how this power should be distributed, the transmission phases should be analyzed. For a given user, in the MAC term, the authors in [21] showed that the total available power is given to the node that has the best channel gain with the destination. This means that in decoding and for- warding X1 to its destination, U2, the relay which has the highest channel gain with U2 is selected. This sce- nario is also used to select the relay to contact with U1 in DF X2. Generally, the selected relay to extend the transmission to U1, may not be the same one that has to contact with U2. For instance, in the MAC phase, assume Rg and Rh are the selected relays to forward the signals to U1 and U2, respectively. Since the BC phase and the MAC phase are done over orthogonal time periods, we can easily assume that the channel gain for a given link does not change over 2n uses of the channel i.e., |h1Rg| = |hRg1|. Then, for instance, the selected relay to forward to U1 can be chosen to receive from U1 in the BC phase. Since each user can be in touch with only the selected relay over a given frequency band, the two relays may be used to receive from the two sources in the BC phase and then to DF the signals in the MAC phase, as depicted in Fig. 4. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 281 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES 4.1. Power Optimization in MISO Channel R1 = R2 PT = P1 + P2 + PRh + PRg 0 < P1, P2, PRh, PRg < PT . (14) | 2Rg| 2 | 2Rh| RMISO2 = C P4(|h where P3 + P4 = PRg = relay’s power allocated to maximize RT = R1 + R2 s.t. R1 = R2 PT = P1 + P2 + PRh + PRg 0 < P1, P2, PRh, PRg < PT . (14) RMISO2 = C P4(|hRg1|2 + |hRh1|2) 2  , (21) (21) (14) where P3 + P4 = PRg = PRh, P4 is the part of each relay’s power allocated to transmit XRg1 and XRh1 to c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 282 4.1. Power Optimization in MISO Channel In this Subsection, the achievable sum rate is maxi- mized in the case that the two relays and their destina- tion forms a MISO channel. We start solving this opti- mization problem by noting that the maximum achiev- able rate, over a relay channel, is obtained in the case of RBC = RMISO. Thus, for the user, U1, we may write RBC1 = RMISO1, (15) (15) where RBC1 = C |h1Rg|2P1  + C |h1Rh|2P1  = (16) = C |h1Rg|2P1 + |h1Rh|2P1 + |h1Rg|2|h1Rh|2P 2 1  , RMISO1 = C P3(|hRg2|2 + |hRh2|2) 2  , (17) (17) Fig. 4: TWRC in which the relays that have the best channel gains to the destinations are selected. Rg has the best channel gain with U1, Rh has the best channel with U2. The two sources use different frequencies to communi- cate with the relays. where P3 is the part of each relay’s power allocated to transmit XRg2 and XRh2. Noting that, in the case of cooperative relays, the transmission from the two relays to any destination forms a MISO channel. For example, the capacity of the MISO channel, with two transmit antennas and one receive antenna, from the relays to U2, is given by [22]: CMISO1 = C P3(|hRg2|2 + |hRh2|2) 2  . (18) (18) Fig. 4: TWRC in which the relays that have the best channel gains to the destinations are selected. Rg has the best channel gain with U1, Rh has the best channel with U2. The two sources use different frequencies to communi- cate with the relays. Hence, in Multiple Input Multiple Output (MIMO) channel, equal allocated power to all transmit anten- nas is commonly used. Further, similar result can be obtained for U2. In this case, we may start by choosing Thus, the power allocation among the two users and the selected two relays has an important role of maxi- mizing each user’s rate and also the sum rate. There- fore, the problem of maximizing the sum rate under the fairness constraint is considered. Hence, this opti- mization problem can be formulated as: RBC2 = RMISO2, (19) (19) where where RBC2 = = C |h2Rg|2P2 + |h2Rh|2P2 + |h2Rg|2|h2Rh|2P2  (20) RBC2 = = C |h2Rg|2P2 + |h2Rh|2P2 + |h2Rg|2|h2Rh|2P2  (20) RMISO2 = C P4(|hRg1|2 + |hRh1|2) 2  , (21) (20) maximize RT = R1 + R2 s.t. 4.2. Power Optimization in MAC Channel their destination U1. From Eq. (15) and Eq. (19), it is clear that four unknowns P1, P2, P3, and P4 are avail- able. Thus, two more equations should be obtained to solve this problem. The key to our solution is that R1 = R2, RBC1 = RMISO1 and RBC2 = RMISO2. Thus, we may have In this Subsection, we consider the case that the se- lected relays do not cooperate to forward each user’s signal into its destination. Thus, the channel from the relays to each destination form a MAC one. Thus, for- warding U ′ 1s signal to its destination, by the two relays, is given by: RBC1 = RBC2, (22) (22) RBC1 = RBC2, (22) (22) and and RMISO1 = RMISO2, (23) (23) RMISO1 = RMISO2, RMAC1 = C |hRg2|2PRg2 + |hRh2|2PRh2 +2ρ2|hRg2||hRh2|pPRg2PRh2  . (32) (32) Now by solving Eq. (23), the following is obtained, Now by solving Eq. (23), the following is obtained, P3 = |hRg1|2 + |hRh1|2 |hRg2|2 + |hRh2|2 P4. (24) 4) Similarly, forwarding U ′ 2s signal to its destination is expressed as: ) Similarly, forwarding U ′ 2s signal to its destination is expressed as: Then, by substituting the result from Eq. (24) in Eq. (15) and in Eq. (19), we get Then, by substituting the result from Eq. (24) in Eq. (15) and in Eq. (19), we get RMAC2 = C |hRg1|2PRg1 + |hRh1|2PRh1 +2ρ1|hRg1||hRh1|pPRg1PRh1  . (33) (33) P1 = |hRg2|2 + |hRh2|2 2 P4, P2 = |hRg2|2 + |hRh2|2 2 P4, P1 = |hRg2|2 + |hRh2|2 2 P4, (25) P2 = |hRg2|2 + |hRh2|2 2 P4, (26) (25) Further, we remind that the rates during the BC phase, as derived in the previous Subsection, do not change. and and (26) In this case, an iterative power allocation algorithm is characterized instead of solving a set of equations to get a suboptimal solution, as in the previous Sub- section. Here, an algorithm is characterized to allocate the total power among all nodes such that the sum rate RT is maximized under fairness constraint. respectively. respectively. Finally, by replacing the results from Eq. (24), Eg. (25), and Eq. (26) in PT = P1 + P2 + PRh + PRg, the total available power can be optimally distributed as Algorithm 1 Iterative Power Optimizations. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 282 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER ERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES 4.2. Power Optimization in MAC Channel • In allocating PRg2 and PRh2, the relay which has higher channel gain with the desired destination is given more power than the other relay. In the next Subsection, instead of solving a set of equations again, an iterative algorithm is designed to solve the power allocation problem among all nodes. 4.2. Power Optimization in MAC Channel P4 = 2b 2ab + 4a + 4bPT , (27) P3 = 2a 2ab + 4a + 4bPT , (28) P2 = ab 2ab + 4a + 4bPT , (29) P1 = ab 2ab + 4a + 4bPT , (30) and PRh = PRg = P3 + P4 (31) = a + b ab + 2a + 2bPT ,  Algorithm 1 Iterative Power Optimizations. 1: Initializations: Based on the channel gains, select P1 and P2 such that RBC1 = RBC2. 2: Select PRg2 and PRh2 such that RBC1 = RMAC1. 3: Can we find PRg1 and PRh1 such that RBC2 = RMAC2, PRg = PRg1 + PRg2, and PRh = PRh1 + PRh2, 3.1: If yes, then go to step 4. 3.2: If no, then go to step 1. 4: Save this solution as R∗ T . Can we find another set of values to get higher than R∗ T 4.1: If yes, then go to step 1. 4.2: If no, then go to step 5. 5: Save R∗ T 6: Stop P4 = 2b 2ab + 4a + 4bPT , P3 = 2a 2ab + 4a + 4bPT , P2 = ab 2ab + 4a + 4bPT , P1 = ab 2ab + 4a + 4bPT , (30) (31) where a = |hRg1|2 + |hRh1|2 , and b = |hRg2|2 + |hRh2|2 . In forwarding the signals to their destinations, this solution confirms that more power is allocated to the direction which has the lower channel gain. However, this is a subopti- mal solution since more solutions can be obtained by solving RBC1 = RBC2, RBC1 = RMISO2, and RBC2 = RMISO1. where a = |hRg1|2 + |hRh1|2 , and b = |hRg2|2 + |hRh2|2 . In forwarding the signals to their destinations, this solution confirms that more power is allocated to the direction which has the lower channel gain. However, this is a subopti- mal solution since more solutions can be obtained by solving RBC1 = RBC2, RBC1 = RMISO2, and RBC2 = RMISO1. Remark 1. The following points should be considered when Alg. 1 is implemented. • In allocating P1 and P2, the user which has less channel gains with the relays is given more power such that RBC1 = RBC2 is obtained. • In allocating PRg2 and PRh2, the relay which has higher channel gain with the desired destination is given more power than the other relay. Remark 1. The following points should be considered when Alg. 1 is implemented. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 283 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES 6. In this paper, the TWRC with multiple parallel re- lays has been considered. The achievable rate region has been derived in the case that the transmission is carried over channels with different frequency bands. In addition, the best relays, that can be used to for- ward the signals, have been selected. To allocate the right amount of power to every node, two optimiza- tion problems were considered. Finally, some numer- ical examples were drawn to show the importance of our theoretical work. Fig. 5: Achievable rate of U1 vs. number of used relays for different values of hRi2. 5. Numerical Results Fig. 6: Comparison between the two encoding schemes. This Section presents some numerical examples to show the importance of our theoretical part. Basically, two examples are presented (i) to show the relation between the achievable rate of a given user and number of relays, (ii) to compare between the two developed encoding schemes, and (iii) to compare between the two studied power allocation techniques. Figure 5 shows the achievable rate of U1 as a func- tion of the number of used relays. In this numerical example, the following parameters h1Ri = 2, P1 = 100, and PRi = 100 L , where i ∈[1, L] are used. It clearly shows that the achievable rate increases as the num- ber of relays is so increased. In addition, as number of relays increases beyond a given value such as L = 10, the achievable rate marginally increases. Further, as the channel gain hRi2 increases so does the achievable rate. Fig. 6: Comparison between the two encoding schemes. References [1] MEULEN, V. D. Three-Terminal Communica- tion Channels. Advances in Applied Probability. 1971, vol. 3, iss. 1, pp. 120–154. ISSN 0001-8678. DOI: 10.2307/1426331. Fig. 5: Achievable rate of U1 vs. number of used relays for different values of hRi2. [2] COVER, T. and A. E. GAMAL. Capac- ity theorems for the relay channel. IEEE Transactions on Information Theory. 1979, vol. 25, iss. 5, pp. 572–584. ISSN 0018-9448. DOI: 10.1109/TIT.1979.1056084. Figure 6 shows the achievable rate region of the TWRC in three different cases. This is to compare be- tween the considered (i) two optimization algorithms, and (ii) two forwarding encoding mechanisms. In these examples, h1Rh = hRh1 = 2, h1Rg = hRg1 = 1.2, h2Rh = hRh2 = 1.5, h2Rg = hRg2 = 1.8, and PT = 200 are set. First, In MISO channel, this figure clearly demonstrates that the iterative algorithm has achiev- able rate higher than that obtained by employing the non-optimal analytical solution. This is mainly be- cause the iterative solution gives more chance to select the right power for each node. Secondly, this figure also shows that when the two relays form a MAC channel has achievable region higher than that the MISO case. [3] KRAMER, G., M. GASTPAR and P. GUPTA. Cooperative Strategies and Capacity The- orems for Relay Networks. IEEE Transac- tions on Information Theory. 2005, vol. 51, iss. 9, pp. 3037–3063. ISSN 0018-9448. DOI: 10.1109/TIT.2005.853304. [4] GHABELI, L. and M. R. AREF. Comprehensive partial decoding approach for two-level relay net- works. IET Communications. 2009, vol. 3, iss. 4, pp. 585–596. ISSN 1751-8628. DOI: 10.1049/iet- com.2008.0141. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 284 SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES [5] HU, R., C. HU, J. JIANG, X. XIE and L. SONG. Full-Duplex Mode in Amplify-and-Forward Re- lay Channels: Outage Probability and Ergodic Capacity. International Journal of Antennas and Propagation. 2014, vol. 2014, iss. 1, pp. 1–8. ISSN 1687-5877. DOI: 10.1155/2014/347540. [14] CUI, T., T. HO and J. KLIEWER. Memory- less relay strategies for two-way relay channels. IEEE Transactions on Communications. 2009, vol. 57, iss. 10, pp. 3132–3143. ISSN 0090-6778. DOI: 10.1109/TCOMM.2009.10.080222. [15] WEI, L and W. CHEN. Efficient Compute-and- Forward Network Codes Search for Two-Way Re- lay Channel. IEEE Communications Letters. 2012, vol. 16, iss. 8, pp. 1204–1207. ISSN 1089-7798. DOI: 10.1109/LCOMM.2012.052112.120469. [6] WEN, C. K., K. K. WONG and C. NG. On the Asymptotic Properties of Amplify- and-Forward MIMO Relay Channels. IEEE Transactions on Communications. 2011, vol. 59, iss. 2, pp. 590–602. ISSN 0090-6778. DOI: 10.1109/TCOMM.2011.111710.090516. [16] RATAICZAK, K., K. BAKOWSKI and K. WESOLOWSKI. Two-way relaying for 5G sys- tems: Comparison of network coding and MIMO techniques. In: IEEE Wireless Communication and Networking Conference. Istanbul: IEEE, 2014, pp. 376–381. ISBN 978-1-4799-3083-8. DOI: 10.1109/WCNC.2014.6952037. [7] EL GAMAL, A. and S. ZAHEDI. Capacity of a class of relay channels with orthogonal compo- nents. IEEE Transactions on Information The- ory Society. 2005, vol. 51, iss. 5, pp. 1815–1817. ISSN 0018-9448. DOI: 10.1109/TIT.2005.846438. [17] ZENG, M., R. ZHANG and S. CUI. On Design of Collaborative Beamforming for Two-Way Relay Networks. IEEE Transactions on Signal Process- ing. 2011, vol. 59, iss. 5, pp. 2284–2295. ISSN 1053- 587X. DOI: 10.1109/TSP.2011.2107906. [8] LIANG, Y. and V. V. VEERAVALLI. Gaus- sian Orthogonal Relay Channels: Optimal Re- source Allocation and Capacity. IEEE Trans- actions on Information Theory Society. 2005, vol. 51, iss. 9, pp. 3284–3289. ISSN 0018-9448. DOI: 10.1109/TIT.2005.853305. [18] RAZMI, A., M. ATTARI, E. SOLEIMANI- NASAB and A. GHASEMI. Single and Dual Relay Selection in Two-Way Network-coded Relay Net- works. Wireless Personal Communications. 2015, vol. 83, iss. 1, pp. 99–115. ISSN 0929-6212. DOI: 10.1007/s11277-015-2382-6. [9] SAHIN, O., O. SIMEONE and E. ERKIP. In- terference Channel With an Out-of-Band Relay. IEEE Transactions on Information Theory Soci- ety. 2011, vol. 57, iss. 5, pp. 2746–2764. ISSN 0018- 9448. DOI: 10.1109/TIT.2011.2119710. [19] HGUYEN, H., H. NGUYEN and T. LE- NGOC. c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING Diversity Analysis of Relay Selection Schemes for Two-Way Wireless Relay Net- works. Wireless Personal Communications. 2011, vol. 59, iss. 2, pp. 173–189. ISSN 0929-6212. DOI: 10.1007/s11277-009-9911-0. [10] ZHANG, S., S. C. LIEW, H. WANG and X. LIN. Capacity of Two-Way Relay Channel. In: 4th In- ternational Conference, AccessNets 2009. Hong Kong: Springer, 2010, pp. 219–231. ISBN 978-3- 642-11664-3. DOI: 10.1007/978-3-642-11664-3. [20] COVER, T. M. and J. A. THOMAS. Elements of Information Theory. New York: Wiley, 2006. ISBN 978-0-471-24195-9. [11] RANKOV, B. and A. WITTNEBEN. Achiev- able Rate Regions for the Two-way Relay Channel. In: IEEE International Symposium on Information Theory. Seattle, WA: IEEE, 2006, pp. 1668–1672. ISBN 1-4244-0504-1. DOI: 10.1109/ISIT.2006.261638. [21] PARK, T., J. JANG, O. S. SHIN and K. B. LEE. Transmit power allocation for a downlink two-user interference channel. IEEE Communication Let- ters. 2005, vol. 9, iss. 1, pp. 13–15. ISSN 1089- 7798. DOI: 10.1109/LCOMM.2005.01019. [12] NAM, W., S. Y. CHUNG and Y. H. LEE. Capacity Bounds for Two-Way Relay Chan- nels. In: IEEE International Zurich Sem- inar on Communications. Zurich: IEEE, 2008, pp. 144–147. ISBN 978-1-4244-1682-0. DOI: 10.1109/IZS.2008.4497296. [22] TELATAR, I. E. Capacity of multi-antenna Gaus- sian channels. European Transactions on Telecom- munications. 1999, vol. 10, iss. 6, pp. 585–596. ISSN 2161-3915. DOI: 10.1002/ett.4460100604. [13] HE, F., Y. SUN, L. XIAO and X. CHEN. Capacity Region Bounds and Resource Alloca- tion for Two-Way OFDM Relay Channels. IEEE Transactions on Wireless Communications. 2013, vol. 12, iss. 6, pp. 2904–2917. ISSN 1536-1276. DOI: 10.1109/TWC.2013.042213.121205. About Authors Zouhair AL-QUDAH was born in Irbid, Jordan in 1979. He received the B.Sc. in Telecommunication c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING c⃝2016 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERING 285 INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES VOLUME: 14 | NUMBER: 3 | 2016 | SEPTEMBER INFORMATION AND COMMUNICATION TECHNOLOGIES AND SERVICES Engineering from Yarmouk University, Jordan in 2002, the M.Sc. in Electrical Engineering from Kalmar Uni- versity College, Sweden in 2006, and the Ph.D. degree in Electrical Engineering from Southern Methodist University at Dallas, Texas in 2013. Since September 2013, he has been with Al-Hussein Bin Talal university at Ma’an, Jordan, where he is currently an Assistant Professor. His research interest span various aspects of multi-path fading channels, including Multiuser information theory, interference cancellation tech- niques, and practical coding techniques for Dirty Paper problem. Wael ABU SHEHAB was born in Kuwait in 1972. He received his M.Sc. and Ph.D. degrees in Electronics and Telecommunication Technique from VSB–Technical University of Ostrava, Czech Republic, in 1997 and 2001, respectively. He is currently an Assistant Professor in the Department of Electrical Engineering at Al-Hussein Bin Talal University, Jordan. His field of research spans a wide range of topics including wireless communication, information theory and control systems. 286
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Growth Hormone and Neuronal Hemoglobin in the Brain—Roles in Neuroprotection and Neurodegenerative Diseases
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Keywords: hemoglobin, growth hormone, insulin-like growth factor I, anemia, erythropoietin, ischemia, stroke, neurodegenerative diseases Growth Hormone and Neuronal Hemoglobin in the Brain—Roles in Neuroprotection and Neurodegenerative Diseases Marion Walser 1,2*, Johan Svensson 1,2, Lars Karlsson 3,4, Reza Motalleb 3, Maria Åberg 2,5, H Georg Kuhn 3,6, Jörgen Isgaard 1,2,7 and N David Åberg 1,2 1 Department of Internal Medicine, Institute of Medicine, The Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden, 2 Region Västra Götaland, Sahlgrenska University Hospital, Gothenburg, Sweden, 3 Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden, 4 The Queen Silvia Children’s Hospital, Sahlgrenska University Hospital, Gothenburg, Sweden, 5 School of Public Health and Community Medicine at University of Gothenburg, Gothenburg, Sweden, 6 Institute for Public Health, Charite´ – Universitätsmedizin Berlin, Berlin, Germany, 7 Hunter Medical Research Institute, University of Newcastle, Newcastle, NSW, Australia In recent years, evidence for hemoglobin (Hb) synthesis in both animal and human brains has been accumulating. While circulating Hb originating from cerebral hemorrhage or other conditions is toxic, there is also substantial production of neuronal Hb, which is influenced by conditions such as ischemia and regulated by growth hormone (GH), insulin-like growth factor-I (IGF-I), and other growth factors. In this review, we discuss the possible functions of circulating and brain Hb, mainly the neuronal form, with respect to the neuroprotective activities of GH and IGF-I against ischemia and neurodegenerative diseases. The molecular pathways that link Hb to the GH/IGF-I system are also reviewed, although the limited number of reports on this topic suggests a need for further studies. In summary, GH and/or IGF-I appear to be significant determinants of systemic and local brain Hb concentrations through mediating responses to oxygen and metabolic demand, as part of the neuroprotective effects exerted by GH and IGF-I. The nature and quantity of the latter deserve further exploration in specific experiments. In recent years, evidence for hemoglobin (Hb) synthesis in both animal and human brains has been accumulating. While circulating Hb originating from cerebral hemorrhage or other conditions is toxic, there is also substantial production of neuronal Hb, which is influenced by conditions such as ischemia and regulated by growth hormone (GH), insulin-like growth factor-I (IGF-I), and other growth factors. In this review, we discuss the possible functions of circulating and brain Hb, mainly the neuronal form, with respect to the neuroprotective activities of GH and IGF-I against ischemia and neurodegenerative diseases. The molecular pathways that link Hb to the GH/IGF-I system are also reviewed, although the limited number of reports on this topic suggests a need for further studies. In summary, GH and/or IGF-I appear to be significant determinants of systemic and local brain Hb concentrations through mediating responses to oxygen and metabolic demand, as part of the neuroprotective effects exerted by GH and IGF-I. The nature and quantity of the latter deserve further exploration in specific experiments. Edited by: Riccarda Granata, University of Turin, Italy Reviewed by: Neil James MacLusky, University of Guelph, Canada Ernest Freeman, Kent State University, United States *Correspondence: Marion Walser marion.walser@medic.gu.se Specialty section: This article was submitted to Neuroendocrine Science, a section of the journal Frontiers in Endocrinology Received: 14 September 2020 Accepted: 23 November 2020 Published: 08 January 2021 REVIEW published: 08 January 2021 doi: 10.3389/fendo.2020.606089 REVIEW published: 08 January 2021 doi: 10.3389/fendo.2020.606089 REVIEW published: 08 January 2021 doi: 10.3389/fendo.2020.606089 REVIEW published: 08 January 2021 doi: 10.3389/fendo.2020.606089 INTRODUCTION Walser M, Svensson J, Karlsson L, Motalleb R, Åberg M, Kuhn HG, Isgaard J and Åberg ND (2021) Growth Hormone and Neuronal Hemoglobin in the Brain—Roles in Neuroprotection and Neurodegenerative Diseases. Front. Endocrinol. 11:606089. doi: 10.3389/fendo.2020.606089 It is known that GH and IGF-I are associated with circulating hemoglobin (Hb) levels in health and disease states [for reviews, see (1, 2)]. Recently, it has been discovered that Hb is also locally expressed in the brain (3, 4) [for a review, see (5)], which suggests that the oxygen-binding nature of hemoglobin may have a neuroprotective role in the brain. Although each of these topics have been reviewed previously, a comprehensive review of circulating and local Hb in relation to the neuroprotective and cognitive effects of GH and IGF-I has to the best of our knowledge not been January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org Growth Hormone, Hemoglobin, and the Brain Walser et al. myoglobin (Mb), cytoglobin (Cygb), and neuroglobin (Ngb) [for reviews, see (5, 9)]. With respect to the brain, it is important to note that neuronal Hb (nHb) is present in parallel with the structurally different Ngb, with which it shares 25% protein sequence identity (10). Although the presence of both globins has been demonstrated (11), their relative amounts and the overlaps in their expression profiles are only partly known (11). Unlike Hb, Ngb is not responsive to erythropoietin (EPO). Nevertheless, Ngb appears to have similar neuroprotective functionalities, as it has been shown to correlate with serum IGF-I in hypoxic-ischemic conditions (12). Mammalian Hb is a tetramer of 574 amino acids, presented. Here, we present an updated review of the potential links between these areas of neuroscience, in which we also identify knowledge gaps that warrant further investigation (Figure 1). Hemoglobin Biochemistry and Relationship to Other Globins Hemoglobins are widespread in the biosphere and are found in all kingdoms of organisms, including prokaryotes, fungi, plants, and animals. The ancestral Hb gene existed phylogenetically before the divergence of plants and animals (6). There are at least four different globins in vertebrates (Table 1): Hb, FIGURE 1 | Model of crosstalk between neuronal hemoglobin (nHb), growth hormone (GH), and insulin-like growth factor 1 (IGF-I), and the known relations to brain diseases. With respect to interactions with neuronal Hb (nHb), the green arrows are beneficial, and the red arrows are detrimental pathways. Please, observe that circulating or free HbA has other effects not included in this figure. In general, GH and IGF-I levels within the normal ranges are optimal for the metabolism of oxygen and iron and for the mitochondria, which is beneficial for the brain. With age or for other reasons (e.g., genes, environment), the levels of GH and IGF-I decline, and the metabolism deteriorates leading to lower levels of nHb. This has adverse effects on degenerative brain diseases (AD, PD, MS), although in some aspects nHb may also respond in a manner that slows the disease progression. References for the depicted relationships are given in the main text. FIGURE 1 | Model of crosstalk between neuronal hemoglobin (nHb), growth hormone (GH), and insulin-like growth factor 1 (IGF-I), and the known relations to brain diseases. With respect to interactions with neuronal Hb (nHb), the green arrows are beneficial, and the red arrows are detrimental pathways. Please, observe that circulating or free HbA has other effects not included in this figure. In general, GH and IGF-I levels within the normal ranges are optimal for the metabolism of oxygen and iron and for the mitochondria, which is beneficial for the brain. With age or for other reasons (e.g., genes, environment), the levels of GH and IGF-I decline, and the metabolism deteriorates leading to lower levels of nHb. This has adverse effects on degenerative brain diseases (AD, PD, MS), although in some aspects nHb may also respond in a manner that slows the disease progression. References for the depicted relationships are given in the main text. FIGURE 1 | Model of crosstalk between neuronal hemoglobin (nHb), growth hormone (GH), and insulin-like growth factor 1 (IGF-I), and the known relations to brain diseases. With respect to interactions with neuronal Hb (nHb), the green arrows are beneficial, and the red arrows are detrimental pathways. Hemoglobin Biochemistry and Relationship to Other Globins The heme group contains four pyrrole rings, the nitrogen atoms of which coordinate a central iron atom that binds weakly to oxygen (14). The main function of Hb is to transport oxygen from the lungs to other tissues in the body in exchange for carbon dioxide, which is transported back to the lungs. Molecular oxygen, O2, is essential for cellular respiration in aerobic organisms. Aerobic respiration takes place in the mitochondria of cells and requires oxygen to create adenosine triphosphate (ATP), which provides the energy to drive numerous processes in living cells. However, Hb also functions as a redox enzyme, owing to its ability to bind to hydrogen peroxide (H2O2) (15). In addition, nHb may play a protective role against oxidative and nitrosative stresses by binding nitric oxide (NO), the strongest known ligand of the ferrous heme iron of Hb, with approximately 500,000-times higher affinity than oxygen (16, 17). Although the brain constitutes only ≈2% of bodyweight, it consumes ≈20% of the oxygen in the resting body (18), demonstrating the high energy demand of the brain. Therefore, it is no surprise that Hb is Frontiers in Endocrinology | www.frontiersin.org Hemoglobin Biochemistry and Relationship to Other Globins For RNA normalized expression (NX) see https://www. based map of the human proteome (7). For homology percentages see (8), https://www.ebi.ac.uk/Tools/psa/emboss_matcher/ and https:// References for these relationships are given in main text (section on Hemoglobin biochemistry and relation to other globins). For RNA normalized expression (NX) see https://www. proteinatlas.org/, and Proteomics. Tissue-based map of the human proteome (7). For homology percentages see (8), https://www.ebi.ac.uk/Tools/psa/emboss_matcher/ and https:// www.uniprot.org/. expressed locally in the brain, and it has been attributed numerous functions therein. consisting of two a-globin (Hba; 141 amino acids) subunits and two b-globin (Hbb; 146 amino acids) subunits. Each of these subunits is bound to a heme group (13), ensuring four oxygen- binding groups per tetramer. The tetramer forms HbA (hemoglobin A) in red blood cells and with a different name nHb in the brain, however identical in structure. The heme group contains four pyrrole rings, the nitrogen atoms of which coordinate a central iron atom that binds weakly to oxygen (14). The main function of Hb is to transport oxygen from the lungs to other tissues in the body in exchange for carbon dioxide, which is transported back to the lungs. Molecular oxygen, O2, is essential for cellular respiration in aerobic organisms. Aerobic respiration takes place in the mitochondria of cells and requires oxygen to create adenosine triphosphate (ATP), which provides the energy to drive numerous processes in living cells. However, Hb also functions as a redox enzyme, owing to its ability to bind to hydrogen peroxide (H2O2) (15). In addition, nHb may play a protective role against oxidative and nitrosative stresses by binding nitric oxide (NO), the strongest known ligand of the ferrous heme iron of Hb, with approximately 500,000-times higher affinity than oxygen (16, 17). Although the brain constitutes only ≈2% of bodyweight, it consumes ≈20% of the oxygen in the resting body (18), demonstrating the high energy demand of the brain. Therefore, it is no surprise that Hb is consisting of two a-globin (Hba; 141 amino acids) subunits and two b-globin (Hbb; 146 amino acids) subunits. Each of these subunits is bound to a heme group (13), ensuring four oxygen- binding groups per tetramer. The tetramer forms HbA (hemoglobin A) in red blood cells and with a different name nHb in the brain, however identical in structure. Hemoglobin Biochemistry and Relationship to Other Globins Please, observe that circulating or free HbA has other effects not included in this figure. In general, GH and IGF-I levels within the normal ranges are optimal for the metabolism of oxygen and iron and for the mitochondria, which is beneficial for the brain. With age or for other reasons (e.g., genes, environment), the levels of GH and IGF-I decline, and the metabolism deteriorates leading to lower levels of nHb. This has adverse effects on degenerative brain diseases (AD, PD, MS), although in some aspects nHb may also respond in a manner that slows the disease progression. References for the depicted relationships are given in the main text. January 2021 | Volume 11 | Article 606089 2 Frontiers in Endocrinology | www.frontiersin.org Frontiers in Endocrinology | www.frontiersin.org Growth Hormone, Hemoglobin, and the Brain Walser et al. TABLE 1 | Cell type-specific expression of vertebrate globins in the body and in the brain. Hemoglobin tetramer nHb/HbA Type of globin hemoglobin a hemoglobin b myoglobin cytoglobin neuroglobin Protein abbreviation HBA HBB MB CYGB NGB Transcript abbreviation used in Ms Hba Hbb Mb Cygb Ngb Identity vs Hbb 42% 100% 30% 33% 26% Identity vs Ngb 30% 26% 25% 30% 100% Cell type expression in body cardiac myocytes cardiac myocytes sympathetic nerves smooth muscle cells skeletal muscles skeletal muscles Relative expression in tissues neurons neurons N/A neurons neurons red blood cells 186,1 523,2 heart muscles 366,6 43,4 skeletal muscles 871,2 17,1 smooth muscle 17,6 Olfactory region 5,8 10,8 N/A 5,5 6,4 Cerebral cortex 10 10,7 0,1 11,6 14,2 Hippocampal formation 5,2 17,9 0,2 4,2 1,7 Amygdala 7,1 20,9 0,2 6,2 4,2 Basal ganglia 6,6 21 0,2 8,3 4,8 Thalamus 2,2 3,8 N/A 2,2 0,9 Hypothalamus 5,1 17,4 0,1 11,2 34,5 Midbrain 10,1 31,6 0,2 6,3 2 Pons and medulla 3,3 23,7 N/A 17,7 8 Cerebellum 7,9 6,5 0,1 10,9 1,2 Corpus callosum 3 7,2 N/A 1,5 0,5 Spinal cord 7,9 26,5 0,2 3,5 1,4 References for these relationships are given in main text (section on Hemoglobin biochemistry and relation to other globins). For RNA normalized expression (NX) see https://www. proteinatlas.org/, and Proteomics. Tissue-based map of the human proteome (7). For homology percentages see (8), https://www.ebi.ac.uk/Tools/psa/emboss_matcher/ and https:// www.uniprot.org/. TABLE 1 | Cell type-specific expression of vertebrate globins in the body and in the brain. en in main text (section on Hemoglobin biochemistry and relation to other globins). Local Expression of Hemoglobin in the Brain The presence of Hb-specific transcripts in the brain is a matter of controversy, as contamination by blood may cause false detection of brain Hb expression. Essentially, residual red blood cells in the brain could account for the detection of Hb mRNAs or proteins, which could be erroneously considered to be of parenchymal (non-erythroid) origin, especially in tissues where the capillaries are damaged and red blood cells have dispersed into the parenchyma. This is especially problematic in the case of Hb proteins in the brain, which probably should be attributed mostly to red blood cells. However, since circulating mature erythrocytes do not express mRNA transcripts after the reticulocyte state and the fact that reticulocytes constitute only about 1% of red blood cells, even in non-perfused brains, the presence of Hb transcripts in brain homogenates suggests that they are of parenchymal origin (19). The methodologic problem of red blood cell contamination is practically eliminated in studies of saline-perfused brains, resulting in minimal amounts of residual red blood cells. Further on, histologic techniques have shown specific neuronal and other non- January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 3 Growth Hormone, Hemoglobin, and the Brain Walser et al. synthesized primarily in the liver (30, 31). Furthermore, circulating IGF-I affects the levels of GH through the classic negative feedback loop formed by the hypothalamic-pituitary axis and the liver (26). The secretion levels of GH and IGF-I are highest during adolescence and decline thereafter in an age- related manner (32). erythrocyte expression (4, 20), although the relative amounts of circulating and local Hb in the living brain have to our knowledge not been studied. If local brain nHb constitutes even only 1–5% of the total Hb in the living brain, it could also have relevance for the hemodynamic response in functional imaging studies, which rely on the measurement of oxy- and deoxy-Hb concentrations either indirectly (fMRI-BOLD-signal) or directly (fNIRS-signal) (21). GH exerts its actions via the GH receptor (GHR) (33), which is expressed in virtually every tissue of the body, including the brain (34). From the circulation, GH crosses the blood–brain barrier (BBB) (35, 36), mostly through a process of passive diffusion (37), and binds to the GHR, which is expressed by both neurons and glial cells (38). Local Expression of Hemoglobin in the Brain The dimerization of GHR, which belongs to the type I cytokine receptor family, results in activation of the associated Janus kinase 2 (JAK2) and Src family kinases (34). The activation of JAK2 initiates tyrosine phosphorylation of the signal transducer and activator of transcription 5 (STAT5), the key transcription factor for GH (39). This results in the activation or repression of multiple genes (40), including the stimulation of IGF-I transcription in the liver (30). The EPO receptor (EPO-R) shares homology with the GHR, similarly leading to activation of the JAK2/STAT5 signal transduction pathway (41). It has also been shown that GH induces STAT5 expression in neurons (42), which is of interest with respect to Hb synthesis, as STAT5 activation independently drives erythropoiesis and myelopoiesis, both in vitro and in vivo, in the absence of EPO-signaling via EPO-R or JAK2 (43). Furthermore, experiments have revealed positive correlations between JAK2/STAT5 activation and Hb expression (44). Therefore, STAT5 appears to be a plausible link between GH and the synthesis of the heme portions of Hb, which is known to take place in mitochondria (45). In conclusion, GH appears to act through its key transcription factor STAT5 to enhance nHb expression, although direct evidence for this process is still lacking (Figure 2). Table 1 provides a summary of the central nervous system (CNS) expression of endogenous CNS (non-erythrocyte) Hb. Hb has been found in the rodent and human brains (4, 20) and is expressed in neurons of both young and adult brains (3). Specifically, Hb is expressed in dopaminergic (DA) neurons, and to some degree in cortical and hippocampal astrocytes and mature oligodendrocytes (22). Moreover, in vivo, the expression of the neuronal Hba and Hbb proteins is colocalized in mouse dopaminergic neurons, further indicating that in most cases, the tetrameric Hb structure is intact in the brain. Thus, nHb probably exerts biochemical activities and biological functions similar to those associated with its roles in erythroid cells (23). This has been demonstrated by transfection of a murine DA cell line (MN9D) with a- and b-globin chains, which suggested that Hb expressed in the brain acts as a functional oxygen reservoir in anoxic and hypoxic conditions (22). Furthermore, in cortical pyramidal neurons, Hbb expression has been found to interact with mitochondrial proteins such as ATP synthase and ADP/ ATP translocase (24). These interactions between Hbb and mitochondrial components suggest that Hbb is associated with mitochondrial energetics (24). January 2021 | Volume 11 | Article 606089 Local Expression of Hemoglobin in the Brain Furthermore, nHb, at normal levels, acts as a sensor of the energy status of neurons. In linking the ATP concentration and mitochondrial function to mTOR activity, nHb regulates neurochemical stress responses, autophagy, epigenetic changes, and the neurotransmission of dopamine cells (25). In addition, Hbb overexpression increases the level of H3K4me3, which is a histone marker that regulates the expression of oxidative phosphorylation genes (24), which is in accordance with the finding that nHb can regulate the epigenome of neurons upon exposure to stress (25). Overall, it is now clearly established that Hb is expressed locally throughout the brain, where it acts as an oxygen storage entity and is involved in mitochondrial function. Insulin-Like Growth Factor I—Introduction IGF-I acts through the IGF-I receptor, which is a hetero- tetrameric glycoprotein that belongs to the tyrosine kinase receptor family. Downstream of the receptor, the activation is mediated by its canonical signaling pathways, such as the PI3K/ AKT/mTOR and RAS-RAF-MAP pathways (46). Apart from GH-induced IGF-I production in the liver, which constitutes 75% of the circulating IGF-I (47), IGF-I is also produced locally in tissues, such as the rib growth plate, skeletal and heart muscles (48, 49), and the brain (50). Growth Hormone—Introduction FIGURE 2 | GH and/or IGF-I act as significant determinants of Hb concentrations by adapting adequate levels of Hb to the oxygen demand. STAT5, which is a key transcription factor of GH, is sufficient to allow erythropoiesis and myelopoiesis in vitro and in vivo. The PI3K/AKT/mTOR pathways lie downstream of the IGF-I- receptor. AKT phosphorylation of GATA-1 and its partner FOG-1 coordinates erythroid proliferation and differentiation. HIF-1 induced by IGF-I regulates the supply of oxygen to the cell by creating a balance between oxygen demand and oxygen supply. nHb, Neuronal hemoglobin; GH, growth hormone; IGF-I, insulin-like growth factor 1; STAT5, signal transducer and activator of transcription 5; PI3K/AKT/mTOR, phosphoinositide 3-kinases/protein kinase B/mammalian target of rapamycin; GATA-1, globin transcription factor 1; HIF-1, hypoxia inducible factor 1; FOG-1, friend-of-GATA1. References for the depicted relationships are given in main text. repair (65–67). In addition, the PI3K/AKT/mTOR pathway is known to induce the expression of HIF-1a, which is a transcription factor that acts on endothelial cells, among other cell types, and regulates the supply of oxygen to the cell by ensuring a balance between the oxygen demand and oxygen supply (68). Thus, there is considerable support for the notion that IGF-I is involved in Hb regulation, possibly via interactions with the PI3K/AKT/mTOR signaling pathways and the transcription factors GATA-1 and HIF-1a. activation (53); and 3) the related receptor megalin/LRP2 in the choroid plexus (54). In most studies, the specific route of IGF-I passage through the BBB is not described, nor investigated. One of the most important actions of circulating IGF-I is neuroprotection. For example, in the brains of rats who have suffered ischemic stroke, IGF-I increases neuronal survival via IGF-I receptors (55), thereby improving neurologic functions (46, 56–59). While circulating IGF-I is important, there are also some indications that locally expressed brain IGF-I is independent of peripheral GH, at least in some situations, such as aging (60) and GH deficiency (GHD) induced by hypophysectomy (61). Local brain IGF-I is subject to complex regulation, which to some extent contrasts with the process of peripheral IGF-I signaling in the body. For example, Ames mice, which have a primary deficiency in relation to GH secretion and therefore have lower levels of circulating GH and IGF-I, still have higher levels of IGF- I in the hippocampus (62). Therefore, although peripheral IGF-I signaling is reduced with aging, brain-specific IGF-I signaling may not necessarily be decreased (63). Growth Hormone—Introduction GH is a 191-amino acid, single-chain polypeptide. It is synthesized by and secreted from somatotropic cells of the pituitary gland and stimulates cell growth, reproduction, and regeneration (26). It is well-established that GH promotes postnatal growth and metabolism (for reviews, see (26–28). The secretion of GH is regulated by the balanced release of the two hypothalamic peptides: growth hormone-releasing hormone (GHRH) and growth hormone-inhibiting hormone (GHIH or somatostatin). These, in turn, are influenced by many physiologic stimulators (e.g., physical exercise, nutrition, sleep) and inhibitors (e.g., free fatty acids) (29). Both circulating and locally expressed IGF-I affect various brain functions, probably with overlapping and complementary activities in many respects. Nevertheless, circulating IGF-I is believed to mediate some of the effects of circulating GH on the brain [for a review, see (51)]. One line of evidence for this is the robust increase in IGF-I mRNA and protein levels in several major brain regions early (8 h) after systemic GH administration (35, 36). This is possible because IGF-I crosses the BBB via at least three different transport systems: 1) carrier-mediated uptake through the endothelial walls (52); 2) the classic endocytic receptor low-density lipoprotein receptor-related protein 1 (LRP1), which can be triggered by neuronal GH can act directly on tissues, although many of its effects are mediated by the downstream insulin-like growth factor-I (IGF- I), which is a 70-amino acid polypeptide hormone that is January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 4 Growth Hormone, Hemoglobin, and the Brain Walser et al. FIGURE 2 | GH and/or IGF-I act as significant determinants of Hb concentrations by adapting adequate levels of Hb to the oxygen demand. STAT5, which is a key transcription factor of GH, is sufficient to allow erythropoiesis and myelopoiesis in vitro and in vivo. The PI3K/AKT/mTOR pathways lie downstream of the IGF-I- receptor. AKT phosphorylation of GATA-1 and its partner FOG-1 coordinates erythroid proliferation and differentiation. HIF-1 induced by IGF-I regulates the supply of oxygen to the cell by creating a balance between oxygen demand and oxygen supply. nHb, Neuronal hemoglobin; GH, growth hormone; IGF-I, insulin-like growth factor 1; STAT5, signal transducer and activator of transcription 5; PI3K/AKT/mTOR, phosphoinositide 3-kinases/protein kinase B/mammalian target of rapamycin; GATA-1, globin transcription factor 1; HIF-1, hypoxia inducible factor 1; FOG-1, friend-of-GATA1. References for the depicted relationships are given in main text. Frontiers in Endocrinology | www.frontiersin.org Growth Hormone—Introduction The opposing effects of peripheral and local brain IGF-I signaling have also been demonstrated with respect to glucose metabolism, as a high level of peripheral IGF-I leads to the accumulation of reactive oxygen species and oxidative stress, while high IGF-I levels in the CNS promote renewal and repair (63). January 2021 | Volume 11 | Article 606089 GH/IGF-I and Circulating Hb g It is well established that the level of circulating Hb is regulated mainly by EPO [for a review, see (69)]. Moreover, it has been known for quite some time that GH and/or IGF-I, partly independently of EPO, affect to some extent the amount of blood Hb (70–77). For instance, at the end of a 5-year study of GH replacement therapy in children with GHD, the level of Hb was increased and there was also a positive correlation between the serum concentrations of IGF-I and Hb (78). The Hb- increasing effect of GH in children with GHD appears to be specific for erythropoiesis, since it was shown in another report that there were no effects of GH on white blood cells and platelets, regardless of prior history of anemia (79). In analogy, administration to healthy young adult men of a long-acting GHRH analog, which stimulates GH release into the circulation, induced upregulation of the Hbb protein by 0.5–1.0 log units, corresponding to 7–10 Hb units (80). Moreover, GH and/or IGF-I have been reported to associate with Hb in elderly subjects (81). The various reports of increased Hb following GH administration can be explained by direct stimulatory effects of GH and IGF-I on erythroid cells, in combination with a more generalized indirect effect of GH in facilitating physical activity through increased muscle performance and well-being (82), which in turn enhances general health and Hb production. Conceptually, this may be mediated by the general anabolic effect of GH, which is considered The IGF-I signaling pathway interacts with the EPO signaling pathway for neuroprotection and Hb regulation (Figure 2). Specifically, the IGF-I receptor (IGF-IR) and EPO-R both interact with AKT, which phosphorylates the erythroid-specific transcription factor GATA-1 and its partner FOG-1, which in turn plays a central role in the coordination of erythroid proliferation and differentiation (64). Furthermore, IGF-I acts through the PI3K/AKT/mTOR pathway (65), whereby mTOR plays key roles in identifying nutritional signals, and in promoting cell growth, cell survival, proliferation, and damage January 2021 | Volume 11 | Article 606089 January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 5 Growth Hormone, Hemoglobin, and the Brain Walser et al. to stimulate protein and fat metabolism, which in turn requires increases in oxygen transportation and Hb levels (83). oxygenation of the tissue (93). GH/IGF-I AND VARIOUS BRAIN DISEASES IN RELATION TO HB G / G a d C S p ess o o b Given that endocrine GH and IGF-I stimulate circulating Hb, it is conceivable that they also affect local brain expression of Hb, although the quantity and nature of the expressed induced Hb might be different. In recent years, this possibility has been examined from several perspectives in a number of experimental studies. For example, GH replacement in the GH/IGF-I deficient (Lewis dwarf [dw/dw]) rat robustly increased the transcription levels of Alox15, Hba, and Hbb in the hippocampus (86). The authors of that study imply that this indicates a mechanism through which IGF-I regulates vascular function by decreasing oxidative stress in the brain (87), and they suggest that these effects are mediated by Hb and other globins (86). The notion that GH and/or IGF-I act on brain Hbb is supported by our experiments, in which we observed a substantial decrease in the hippocampal and cortical levels of the Hbb transcript when comparing hypophysectomised (GH- deficient) rats with intact rats, and this effect was noted in both female and male animals (88, 89). Furthermore, GH administration for 6 days to hypophysectomised female rats (90, 91) and male rats (88) robustly (2–4-fold) upregulated the number of Hbb transcripts in the brain. Furthermore, GH administration to the rats for 19 days increased the mRNA levels of Hbb, Alas2, and Alox15. For Hbb and Alas2, the effect size was of a magnitude similar to that seen after 6 days of GH treatment, while Alox15 was not studied in the 6-day experiments (89). Taken together, the different GH administration regimens indicate that the GH effect is not markedly diminished or enhanced over time of administration. For humans, it has also been observed that the level of serum Hbb decreases following pituitary surgery (92). However, the regulation of Alas2 and Alox15 by GH presents a new target of action for GH, since they both have functional links to aerobic metabolism. Specifically, Alas2, which is expressed in the mitochondria of bone marrow cells and red blood cells, and to some degree in the brain (https://www.genecards. org, [Accessed May 26, 2020]), has been shown to be increased by GH/IGF-I and Circulating Hb Alox15, which is expressed in the mitochondria of lung cells and adipocytes, as well as in the brain (https://www.genecards.org, [Accessed May 26, 2020]), has been reported to regulate vascular tone, local blood flow, and blood pressure (94). In addition to the GH administration experiments, we have shown that IGF-I-treatment can increase the expression levels of Hbb, Alas2, and Alox15 (91). IGF-I has also been shown to stimulate erythropoiesis in vivo independently of GH, which means that it could indirectly mediate GH effects on EPO synthesis, erythropoiesis, and Hb regulation. As compared to EPO, which has a substantial and significant effect on Hb levels, the effect of serum IGF-I has been shown to be less-prominent than but still independent of circulating EPO (84). Moreover, it has been suggested that IGF-I is a factor that coordinates red blood cell formation with organ and body growth, and this would account for the adaptation of red blood cell mass to whole body mass (84). From another publication, it can be calculated that an increase of 100 units of serum IGF-I (ng/ml) is associated with an increase of 4.0 units of Hb (g/L) in males and 7.5 units in females (81). A difference in serum IGF-I of 100 ng/ml is rather large considering that the mean serum IGF-I level in middle-aged men and women is in the range of 150–200 ng/ml. The serum IGF-I is also about 100–200 ng/ml higher in young adults than in middle-aged subjects (85). Taken together, these findings indicate definite albeit moderate effects of endocrine GH and IGF-I on circulating Hb. The effects of GH and IGF-I on local brain Hbb expression may be analogous to the endocrine effects on general metabolism requirements, which in turn affect the oxygen demand, and thereby the rate of erythropoiesis (95). Based on these findings, the basal metabolic rate may be lowered after hypophysectomy, with GH restoring the basal metabolism and oxygen consumption, thereby affecting the neuronal oxygen-binding capacity and the levels of vascular-associated transcripts (89, 96). This idea is supported by a study showing that bovine GH- transgenic mice exhibit an increased basal metabolic rate (97). In summary, there is evidence that both GH and IGF-I, independently of EPO, can augment the level of Hb both systemically and locally in the CNS, especially in the case of GH deficiency. Frontiers in Endocrinology | www.frontiersin.org Stroke and Hemoglobin Hb is important in relation to brain injuries in several aspects. The most common brain injuries are ischemic stroke, hemorrhagic stroke, and perinatal asphyxia. Ischemic strokes, regardless of etiology, result in an inadequate blood supply that leads to cell death within the affected tissue [for reviews, see (98–100)]. Ischemic pre- or post-conditioning is an experimental stroke paradigm that can reduce the ischemic injury. Interestingly, ischemic preconditioning to hypoxia in vitro robustly increases nHb expression in neuronal cultures from E-17 rats (101). A plausible explanation for this is that Hb inhibits oxidative stress- induced mitochondrial dysfunction and caspase activation via the protein kinase A, protein kinase C, and mitogen-activated protein (MAP)-kinase signal transduction pathways (102). In contrast to the intracellular expression of Hb, extracellular Hb is highly toxic to the brain and constitutes a mechanism of damage after ischemic stroke, and more profoundly so after hemorrhagic stroke (103). Specifically, free Hb induces the widespread and concentration-dependent death of neocortical neurons in vitro (104, 105). Similarly, intracerebral injections of free Hb or its degradation products, including heme, induce brain injury in vivo (106). While the exact mechanisms are unknown, it appears that extracellular Hb contributes to oxidative stress and iron accumulation in neurons, resulting in a deleterious cycle of heme breakdown, Hb denaturation, and, over time, neurodegeneration (107). Overall, it seems that extracellular free Hb activates deleterious cellular pathways, whereas intracellular Hb is primarily protective (20). In addition, circulating Hb may affect stroke risk, severity, and outcome, presumably through mechanisms other than the January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 6 Growth Hormone, Hemoglobin, and the Brain Walser et al. Hb. For example, among patients with severe TBI, lower levels of Hb are consistently associated with lower survival rates (127) and poor outcomes (128). While anemia frequently occurs after TBI, the associations with outcome and the effects of blood transfusions are rather inconsistent [for a review, see (129)]. Moreover, studies of post-TBI neuroendocrine dysfunction have found that the somatotropic axis (GH and IGF-I) seems to be the most commonly disrupted pituitary hormonal axis, in similarity to prolactin hormone disruption, whereas the thyrotrophic, corticotrophic, and gonadotrophic axes are less-affected (130), suggesting that GHD is linked to anemia. Interestingly, GH replacement has a positive effect on cardiorespiratory fitness in individuals with TBI (131). Stroke and Hemoglobin GH therapy also ameliorates neuropsychological and psychiatric changes 3 years post-TBI (132), and improves disabilities and cognitive impairments in patients with TBI (133). In animal studies, transgenic mice with astrocyte-specific overexpression of IGF-I have exhibited increased neuroprotection against TBI-induced injury in the hippocampus, resulting in reduced motor and cognitive dysfunctions (134). As mentioned above, since IGF-1 may mediate the effects of GH, both GH (or IGF-I) administration paradigms, including acute and long- term treatments, may have significance for TBI outcomes and the Hb levels in the brain. Thus, there are indications that altered Hb levels are part of the recovery response to GH treatment, a topic that warrants exploration in future studies. neuronal expression of Hb. For example, circulating Hb seems to influence stroke risk, since anemia increases the risk of stroke and worsens stroke outcomes (108). Moreover, in acute ischemic stroke, low levels of circulating Hb independently predict short- and long-term mortality (109), correlate inversely with larger stroke volumes (110), and are strongly associated with subsequent decreases in the Hb and hematocrit levels (111). Interestingly, in comparison to anemia, polycytemia with high levels of Hb (≥15 g/L in men, ≥14 g/L in women) has been associated with twice as many cerebral infarctions (112, 113). This is thought to be mediated by increased viscosity of the blood and comorbidities, causing an increased risk of thrombosis (113). Furthermore, once the clot has been formed, it starts to resolve, which in turn causes erythrocyte lysis and the release of free Hb, which leads to an overload of free, toxic iron (103). Although several studies have shown that GH and IGF-I either protect against injury or promote recovery, these effects have not so far been linked to Hb regulation. It has been shown that GH protects the brain against hypoxic-ischemic injuries (HI) in neonatal rodents (114) and increases motor and cognitive recovery in adult rodents (115–117). Furthermore, the positive effects on functional recovery of GH treatment also appear to be present in humans who are suffering from chronic stroke, as shown by the increased amplitude of blood oxygen level-dependent signals in the brain, which are dependent upon the different magnetic properties of oxy- Hb and deoxy-Hb (118). Stroke and Hemoglobin That the effects of systemic GH treatment are mediated by local or endocrine IGF-I with respect to injuries is not clearly elucidated but certainly possible, as the IGF-I system in the brain shows marked changes in response to transient neural injuries. For instance, in asphyxia, there is an increase in the level of Igf1 in glial cells in the region of the injury (119), suggesting that the IGF-I system is involved in neuroprotection. IGF-I administration has been shown to be both neuroprotective (120) and recovery- promoting (121) in studies of experimental ischemic stroke [for a review, see (59)] and the articles (116, 117, 122). However, the role of circulating IGF-I and its associations with functional outcome in human stroke appear to be complex. While high serum levels of IGF-I have been associated with both worse outcomes (123, 124) and greater stroke severities, they are also linked to better long-term recovery (85, 125). These discrepancies can partially be explained or confounded by the fact that the levels of serum IGF-I are lower in aged, malnourished, and/or sedentary subjects (71) and may depend on the post-stroke sampling time-point, as suggested previously (122). Although the absolute levels of serum IGF-I appear to predict functional outcome, post-stroke dynamic changes (decreases) in the levels of serum IGF-I may also be at least as important (122, 126). Some studies have shown a weak-to-moderate correlation between serum IGF-I and Hb (64, 65, 68), a relationship that has not been investigated in other studies (85, 122, 125). That the functional outcome of stroke seems to be dependent upon the status of the GH/IGF-I axis indicates that there is a correlation with Hb, and this aspect deserves further investigation. Alzheimer’s Disease AD is the most common cause of dementia, and the risk of AD is higher when there is a history of brain lesions, such as TBI (136, 137) or stroke [for review, see (138)]. Early clinical symptoms include difficulties in remembering recent events and conversations, and ultimately there are reduced abilities to walk, speak and swallow. The histopathologic hallmarks of AD are the progressive accumulation of beta-amyloid (Ab) peptide plaques outside neurons in the brain, twisted strands (tangles) of tau protein inside neurons (139), and a general hyperphosphorylation of the tau protein (140). Eventually, these changes result in damage to and death of neurons [Alzheimer’s disease facts and figures (141)]. As is the case for AD and brain Hb expression, several studies have indicated a role for Hb in AD. In humans, Hb protein has been detected in the neurons and glial cells of post-mortem AD brains. Furthermore, the level of local Hb protein has been found to be increased in AD brains (142). This indicates that either the upregulation of Hb expression or leakage of Hb from the circulation into the brain parenchyma (due to disruption of the BBB) is involved in AD pathogenesis (142). In animals, Hbb DEGENERATIVE BRAIN DISEASES, HB, AND GH/IGF-I Alterations in cerebral oxygen metabolism have been found to be associated with many of the most common degenerative brain disorders, such as Alzheimer’s disease (AD), Parkinson’s disease (PD), and multiple sclerosis (MS), and the CNS expression of Hbb has been implicated in these diseases (135). January 2021 | Volume 11 | Article 606089 Traumatic Brain Injury Traumatic brain injury (TBI), which is a risk factor for depression, cognitive impairment, and hypopituitarism, entails decreased levels of circulating GH and IGF-I and has links to circulating and brain January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 7 Growth Hormone, Hemoglobin, and the Brain Walser et al. Resistance to IGF-I signaling early in AD could result in a lack of trophic signals, with subsequent degeneration of neurons (157). Post-mortem studies have shown reduced IGF-I gene expression in AD brains (158, 159), and this was accompanied by resistance to signaling through the IGF-I receptor (158, 159). Talbot et al. have confirmed the presence of resistance to IGF-I receptor signaling by demonstrating that in the post-mortem AD brain, the signaling responses to IGF-1 in the IGF-IR/PI3K/AKT/mTOR pathway are strongly attenuated (160). This dysfunction may result in abnormal responses to mTOR activation in the brain, leading to an AD-type pathology, neuronal death, and glial activation (67). is upregulated with normal aging, as well as in a amyloid precursor protein/PS1 transgenic mice (murine model of AD), possibly serving as a compensatory mechanism for hypoxia (143). In addition, when micro-hemorrhaging occurs as the result of aging, TBI or cerebrovascular disease, Hb from red blood cells can bind to the Ab peptide via the iron-containing heme moiety and accelerate its aggregation (143). Furthermore, altered iron metabolism has been observed in the CNS of patients with a variety of neurodegenerative diseases, including AD. The concomitant occurrence of a decrease in local Hb expression in AD and the increased level of free iron, which is highly toxic due to the creation of reactive oxygen species (144), is possibly coincidental, although it indicates the importance of iron metabolism. Epidemiologic studies have suggested strong associations between anemia, decline of cognitive function, and AD, with an inverse relationship noted between Hb and AD (145–147). Moreover, in a large population-based study, it has been shown that low Hb levels are associated with increased long-term risks of dementia (34%) and AD (41%) (148). In human AD, in similarity to the previous experimental findings (54, 152), there also appears to be reduced passage of IGF-I through the BBB, as indicated by the lower CSF/serum IGF-I ratios detected in patients with AD (161, 162). Traumatic Brain Injury Finally, in a recent study of patients with AD, the serum level of IGF-I was associated with the CSF level of Ab, whereas the CSF level of IGF-I was associated with the CSF level of tau (163). These findings are in accordance with the findings in rodents that IGF-I in the serum has the ability to interact with Ab clearance, possibly, at least partly, at the level of the BBB (54, 152), whereas IGF-I in the brain has the ability to affect the intracellular metabolism of tau (153). Ab activates a molecular response pathway that leads to strong downregulation of Hb gene expression in the brain, which could damage cells due to defective oxygen homeostasis (144). Reduced concentrations of the Hb a-chain and b-chain proteins have been detected in neurons with granular or punctuate hyperphosphorylated tau deposits, in AD neurons with tangles in the hippocampus and frontal cortex, and in AD neurons in the amygdala (135). These findings are in line with a report showing significantly lower levels of mean oxygen metabolism in the AD cortex (149). Loss of Hb is specific, as related transcripts, i.e., for Ngb and the EPO receptor, are expressed at normal levels (135). In summary, there is considerable support for the notion that anemia is a risk factor for dementia, including AD, and that leakage of Hb through a defective BBB can result in an overload of toxic iron in patients with AD. Furthermore, in AD, alterations to both the levels and activity of IGF-I have been documented. However, the pathways that connect IGF-I and local Hb have not been explored in detail. Clearly, more research is needed to elucidate whether the pathologic alterations in the Hb and IGF-I systems interact in AD, resulting in aggravated development and accelerated progression of the disease. PI3K/AKT/mTOR signaling could be one of the molecular pathways that link IGF-I and Hb. g p p There are strong indications that IGF-I is of importance in the development and progression of AD. A deficiency of liver- derived circulating IGF-I in mice resulted in debilitated spatial learning and memory (150), as well as reduced exploratory activity (151). In experimental AD, the passage of IGF-I through the BBB has been shown to be reduced (152), while systemic IGF-I infusions increased Ab clearance, thereby reducing the brain level of Ab (152). Frontiers in Endocrinology | www.frontiersin.org Traumatic Brain Injury In a later study, a specific BBB disruption allowing serum IGF-I entrance into the rodent brain was demonstrated, as the choroid plexus receptor megalin/ LRP2 induced IGF-I transport across the BBB and protected against AD, and in AD mice, megalin abundance was decreased (54). Furthermore, IGF-I not only interacts with Ab metabolism and distribution, but also with tau metabolism, as evidenced by the finding that the phosphorylation of tau is markedly increased in the IGF-I-null brain in mice (153). Multiple Sclerosis MS is primarily an inflammatory disorder of the brain and spinal cord, in which focal lymphocytic infiltration leads to damage to myelin and axons. Initially, the inflammation is transient and re- myelination occurs, but this most often does not persist and the result is chronic neurodegeneration and progressive disability [for a review, see (179)]. Interestingly, there are some lines of evidence to suggest a link to Hb expression in the CNS. In a study of eight monozygotic twin pairs discordant for MS (180), >2-fold upregulation of six gene transcripts was detected in mononuclear cells isolated from the peripheral blood, amongst them Hba2 and Hbb, suggesting some role for these genes in MS pathogenesis (180). This is in line with a report showing increased expression of local Hbb protein in the cortex, as well as intense Hb staining in the pyramidal neuronal cell bodies of patients with MS (181). Specifically, in MS, it has been suggested that neuronal Hbb is part of a mechanism linking neuronal energetics with epigenetic changes in the nucleus, providing neuroprotection by supporting neuronal metabolism (24). Dysregulation of Hbb transport into the nuclei of pyramidal neurons in MS has been suggested by the findings that in patients with MS/experimental MS there is a reduction of the histone marker H3K4me3 and downregulation of genes involved in mitochondrial respiration (24). In contrast, free Hb originating from dying erythrocytes is detrimental in MS pathogenesis, as it causes damage to the myelin and BBB (182). In addition, an association between anemia and MS has been described (183). However, the molecular pathways linking local Hb with IGF-I in cases of PD have been scarcely explored, despite there being indirect indications of possible pathways from other studies of IGF-I. The potential involvement of IGF-I is indicated by the fact that A9 dopamine neurons specifically express GATA protein family members, which are the major Hb transcriptional regulators (22, 172), controlled by the IGF-IR through the AKT-pathway (64). In turn, a-synuclein is an essential regulator of IGF-I-mediated AKT activation, and by binding to the kinase domain of AKT it protects against the aggregation of AKT (173). However, when a-synuclein is overexpressed, activated or inactivated, AKT is sequestered and the IGF-I-mediated survival signal is not propagated (173). Moreover, examination of the clinical correlations in PD cohorts has confirmed that the levels of serum IGF-I is increased at PD onset, suggesting a compensatory mechanism. Parkinson’s Disease PD primarily affects movement coordination, with symptoms such as slowness, rigidity, tremor, and changes in gait. Neurobiologically, PD is characterized by chronic and progressive degeneration of dopamine-producing neural cells in the substantia nigra, which are essential for the activation of a circuit that controls movement [for a review, see (164)]. With respect to PD, a key molecule is brain a-synuclein, which is present at high levels and is concentrated in the presynaptic nerve terminals. It is involved in controlling the plasticity of dopamine overflow, synaptic vesicle recycling, storage, and the compartmentalization of neurotransmitters (165). In PD, a- synuclein aggregates into Lewy bodies, the abnormal intracellular inclusions that are the classical pathologic hallmark of the disease (166). As PD progresses, it often results in dementia secondary to the accumulation of Lewy bodies in the cortex or the accumulation of Ab clumps and tau tangles, not unlike the situation in AD [Alzheimer’s disease facts and figures (141)]. It can also be mentioned that PD dementia is closely related to Lewy body dementia, with the clinical features of the latter mainly differing in that its first clinical feature is dementia, with possible later motor impairments [for a review, see (167)]. Also, symptoms like those of PD, verified with neurobehavioral scores, may be observed after In a prospective, population-based study of older persons, low IGF-I status (<9.4 nmol/L) was associated with both lower levels of cognitive ability and a sharper decline in cognition (154). In a case- control study, lower serum IGF-I levels were significantly related to dementia that was clinically diagnosed as AD (155). However, discrepant results have been reported with respect to the serum and cerebrospinal fluid (CSF) levels of IGF-I in patients with AD. It has been postulated that these discrepancies can be explained in terms of resistance to IGF-I action early in AD development (reflected as increased serum IGF-I), followed by IGF-I deficiency when the disease progresses (reflected as lower serum IGF-I) (156). January 2021 | Volume 11 | Article 606089 8 Growth Hormone, Hemoglobin, and the Brain Walser et al. carbon monoxide intoxication which binds to hemoglobin instead of oxygen, possibly acting in a degenerative way (168). Bearing in mind that nHb plays a vital role in maintaining normal mitochondrial functionality in the brain, it is interesting that Hb is normally highly expressed in the A9 dopamine neurons of the substantia nigra (135, 169). Parkinson’s Disease However, in about 80% of neurons with punctuate a-synuclein deposits and in neurons with Lewy bodies in the substantia nigra and the medulla oblongata, there are clear reductions in the concentrations of Hb a-chain and b-chain proteins (135). Furthermore, mitochondrial Hb protein levels decrease with age in the striatum as a result of increased intracellular a-synuclein accumulation and formation of Hb-a- synuclein complexes, which may contribute to a-synuclein-induced mitochondrial dysfunction and increase the risk of PD (170). This results in a reduced translocation of nHb from the cytoplasm to the mitochondria which may contribute to mitochondrial dysfunction and thereby accelerating PD pathogenesis (170, 171). This is in line with a proposed hypothesis, stating that the oxidative damage contributes to the neurodegenerative process in PD via nHB per se (169). Thus, it seems that there are relatively strong links between PD and Hb regulation in the brain. Multiple Sclerosis Furthermore, in women, estrogens seem to confer strong protection against PD via serum and CSF IGF-I (174). In addition, erythropoietin has been shown to have a potential neuroprotective role in the maintenance of dopaminergic neurons in a rat model of PD (175). There are also indications that the GH/IGF-I system is involved in MS. First, the levels of CSF-GH were found to be 2-fold lower in patients with MS (184). In contrast to CSF levels of GH, the serum levels of GH were unchanged, which suggests normal pituitary function and, instead, indicates malfunction of the BBB or in the local production of GH in the brain. The levels of IGF-I in serum and CSF also showed a trend toward divergence (184). Furthermore, MS and higher levels of disability seem to be associated with a reduction in the bioavailability of IGF-I, possibly due to high serum concentrations of IGF-binding protein-3 (185). Taken together, these findings suggest that Hbb dysregulation and GH abnormalities are present in MS, although to our knowledge, comprehensive evidence for a direct linkage between the two factors is still lacking. PD may also be linked to iron deficiency, since overexpression of Hbb in dopamine cell lines alters transcription related to iron metabolism, O2 homeostasis, oxidative phosphorylation, and nitric oxide synthesis (22). Interestingly, both Hbb and Alas2 are upregulated in iron-deficient mice (176), and these were the two most strongly upregulated transcripts in our experiments involving GH and IGF-I supplementation (88, 89). In addition, free ferrous (Fe2+) and ferric (Fe3+) iron species are cytotoxic and have been suggested to enhance oxidative stress, mitochondrial protein dysfunction, a-synuclein aggregation, neuronal cell death (107, 177), and lipid peroxidation (178). Frontiers in Endocrinology | www.frontiersin.org REFERENCES 17. Saha D, Patgaonkar M, Shroff A, Ayyar K, Bashir T, Reddy KVR. Hemoglobin Expression in Nonerythroid Cells: Novel or Ubiquitous? Int J Inflammation (2014) 2014:803237. doi: 10.1155/2014/803237 1. Moghaddas R, Rapaport R. Growth hormone/insulin-like growth factors and hematopoiesis. Neuro Immune Biol (2002) 2:177–86. doi: 10.1016/ S1567-7443(02)80016-3 18. Clarke DD, Sokoloff LFordham University, Bronx, New York. Circulation and energy metabolism in the brain. In: Siegel GJ, editor. Basic Neurochemistry: Molecular, Cellular and Medical Aspects, 6th Ed. Philadelphia: Lippincott-Raven Publishers (1999). p. 637–69. p. 10458. Available at: https://fordham.bepress.com/chem_facultypubs/81. 2. Aron DC. Insulin-like growth factor I and erythropoiesis. Bio Factors (Oxford England) (1992) 3(4):211–6. 3. Ohyagi Y, Yamada T, Goto I. Hemoglobin as a novel protein developmentally regulated in neurons. Brain Res (1994) 635(1-2):323–7. doi: 10.1016/0006-8993(94)91455-9 19. Goh SH, Josleyn M, Lee YT, Danner RL, Gherman RB, Cam MC, et al. The human reticulocyte transcriptome. Physiol Genomics (2007) 30(2):172–8. doi: 10.1152/physiolgenomics.00247.2006 4. Richter F, Meurers BH, Zhu C, Medvedeva VP, Chesselet MF. Neurons express hemoglobin a- and b-chains in rat and human brains. J Comp Neurol (2009) 515(5):538–47. doi: 10.1002/cne.22062 20. He Y, Hua Y, Lee JY, Liu W, Keep RF, Wang MM, et al. Brain Alpha- and Beta-Globin Expression after Intracerebral Hemorrhage. Trans Stroke Res (2010) 1(1):48–56. doi: 10.1007/s12975-009-0004-x 5. Xie L-K, Yang S-H. Brain globins in physiology and pathology. Med Gas Res (2016) 6(3):154–63. doi: 10.4103/2045-9912.191361 21. Sakatani K, Murata Y, Fujiwara N, Hoshino T, Nakamura S, Kano T, et al. Comparison of blood-oxygen-level-dependent functional magnetic resonance imaging and near-infrared spectroscopy recording during functional brain activation in patients with stroke and brain tumors. J Biomed optics (2007) 12(6):062110. doi: 10.1117/1.2823036 6. Hardison RC. A brief history of hemoglobins: Plant, animal, protist, and bacteria. Proc Natl Acad Sci U States A (1996) 93(12):5675–9. doi: 10.1073/ pnas.93.12.5675 7. Uhlén M, Fagerberg L, Hallström BM, Lindskog C, Oksvold P, Mardinoglu A, et al. Proteomics. Tissue-based map of the human proteome. Sci (New York NY) (2015) 347(6220):1260419. doi: 10.1126/science.1260419 22. Biagioli M, Pinto M, Cesselli D, Zaninello M, Lazarevic D, Roncaglia P, et al. Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells. Proc Natl Acad Sci U S A (2009) 106 (36):15454–9. doi: 10.1073/pnas.0813216106 8. Morrill GA, Kostellow AB. Molecular Properties of Globin Channels and Pores: Role of Cholesterol in Ligand Binding and Movement. Front Physiol (2016) 7:360. doi: 10.3389/fphys.2016.00360 23. REFERENCES Russo R, Zucchelli S, Codrich M, Marcuzzi F, Verde C, Gustincich S. Hemoglobin is present as a canonical a2b2 tetramer in dopaminergic neurons. Biochim Biophys Acta - Proteins Proteomics (2013) 1834(9):1939– 43. doi: 10.1016/j.bbapap.2013.05.005 9. Rahaman MM, Straub AC. The emerging roles of somatic globins in cardiovascular redox biology and beyond. Redox Biol (2013) 1:405–10. doi: 10.1016/j.redox.2013.08.001 10. Schelshorn DW, Schneider A, Kuschinsky W, Weber D, Krüger C, Dittgen T, et al. Expression of hemoglobin in rodent neurons. J Cereb Blood Flow Metab (2009) 29(3):585–95. doi: 10.1038/jcbfm.2008.152 24. Brown N, Alkhayer K, Clements R, Singhal N, Gregory R, Azzam S, et al. Neuronal Hemoglobin Expression and Its Relevance to Multiple Sclerosis Neuropathology. J Mol Neurosci (2016) 59(1):1–17. doi: 10.1007/s12031- 015-0711-6 11. Dewilde S, Ebner B, Vinck E, Gilany K, Hankeln T, Burmester T, et al. The nerve hemoglobin of the bivalve mollusc Spisula solidissima: molecular cloning, ligand binding studies, and phylogenetic analysis. J Biol Chem (2006) 281(9):5364–72. doi: 10.1074/jbc.M509486200 25. Codrich M, Bertuzzi M, Russo R, Francescatto M, Espinoza S, Zentilin L, et al. Neuronal hemoglobin affects dopaminergic cells/’ response to stress. Cell Death Dis (2017) 8:e2538. doi: 10.1038/cddis.2016.458 26. Isaksson OG, Eden S, Jansson JO. Mode of action of pituitary growth hormone on target cells. Annu Rev Physiol (1985) 47:483–99. doi: 10.1146/ annurev.ph.47.030185.002411 12. Liu G, Wu HW, Li ZG. Study on the correlation of changes of IGF-1, GH, and NGB levels and NBNA score in neonates with hypoxic ischemic encephalopathy. Eur Rev Med Pharmacol Sci (2018) 22(10):3173–81. doi: 10.26355/eurrev_201805_15078 27. Thorner MOV, Horvath ML, Kovacs EK. The anterior Pituitary. In: Wilson JDF and W D, editors. Williams textbook of endocrinology. Philadelphia: Sauders, W.B (1992). p. 221–310. 13. Hill RJ, Konigsberg W, Guidotti G, Craig LC. The structure of human hemoglobin. I. The separation of the alpha and beta chains and their amino acid composition. J Biol Chem (1962) 237:1549. 28. Vijayakumar A, Novosyadlyy R, Wu Y, Yakar S, LeRoith D. Biological effects of growth hormone on carbohydrate and lipid metabolism. Growth Horm Igf Res (2010) 20(1):1–7. doi: 10.1016/j.ghir.2009.09.002 14. Hosmane NS. Chapter 5 - Ligands and d-Block Metal Complexes. In: Hosmane NS, editor. Advanced Inorganic Chemistry. Boston: Academic Press (2017). p. 75–87. 29. Bartholomew EF, Martini F, Nath JL. Fundamentals of anatomy & physiology. Upper Saddle River, NJ: Pearson Education Inc (2009). 15. Reeder BJ. The redox activity of hemoglobins: from physiologic functions to pathologic mechanisms. ACKNOWLEDGMENTS significantly to the second version. MW, JS, LK, MÅ, RM, GK, JI, and DÅ contributed to manuscript revision, read, and approved the submitted version. All authors contributed to the article and approved the submitted version. The authors wish to thank Dr. Vincent Collins for making corrections to the language of the manuscript. AUTHOR CONTRIBUTIONS MW wrote the first draft of the manuscript. DÅ contributed significantly to the second version. MW, JS, LK, MÅ, RM, GK, JI, and DÅ contributed to manuscript revision, read, and approved the submitted version. All authors contributed to the article and approved the submitted version. FUNDING IGF-I to Hbb and their relationships to neuroprotection. Hopefully, this will lead to improved therapeutic strategies to stimulate recovery in patients after brain injuries, e.g., after stroke, TBI, and neurodegenerative diseases. This study was supported by the Swedish Medical Society (Svenska Läkaresällskapet), grants from the Swedish State under the agreement between the Swedish Government and the County Councils (ALFGBG-719761 and ALFGBG-722371), the Swedish Stroke Association, and Stiftelsen Peter Erikssons Minnesfond. SUMMARY In summary, GH and IGF-I are significant determinants of Hb concentrations, adapting the local nHb and circulating HbA levels to the demand for oxygen. Both local nHb expression in the brain and GH/IGF-I levels influence cardiovascular and neurodegenerative diseases, such as ischemic injury, TBI, AD, PD and MS. There are indications that the connection between GH and Hb may be related to STAT5, and for IGF-I and Hb, this linkage is likely mediated by the PI3K/AKT/mTOR pathway. It will be of interest to investigate further the signaling pathways linking GH/ Overall, reduced local expression of Hb, specifically in mitochondria, together with an altered iron metabolism and the mutual influences of IGF-I and a-synuclein on AKT regulation may have implications for the development of PD. However, further investigations are needed. January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 9 Growth Hormone, Hemoglobin, and the Brain Walser et al. REFERENCES Antioxid Redox Signal (2010) 13(7):1087–123. doi: 10.1089/ars.2009.2974 30. Chia DJ. Minireview: mechanisms of growth hormone-mediated gene regulation. Mol Endocrinol (2014) 28(7):1012–25. doi: 10.1210/me.2014-1099 16. Bellelli A, Brunori M, Miele AE, Panetta G, Vallone B. The allosteric properties of hemoglobin: insights from natural and site directed mutants. Curr Protein Pept Sci (2006) 7(1):17–45. doi: 10.2174/138920306775474121 31. Ohlsson C, Mohan S, Sjogren K, Tivesten A, Isgaard J, Isaksson O, et al. The role of liver-derived insulin-like growth factor-I. Endocr Rev (2009) 30 (5):494–535. doi: 10.1210/er.2009-0010 January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 10 Growth Hormone, Hemoglobin, and the Brain Walser et al. 32. Ashpole NM, Sanders JE, Hodges EL, Yan H, Sonntag WE. Growth hormone, insulin-like growth factor-1 and the aging brain. Exp Gerontol (2015) 68:76–81. doi: 10.1016/j.exger.2014.10.002 52. Armstrong CS, Wuarin L, Ishii DN. Uptake of circulating insulin-like growth factor-I into the cerebrospinal fluid of normal and diabetic rats and normalization of IGF-II mRNA content in diabetic rat brain. J Neurosci Res (2000) 59(5):649–60. doi: 10.1002/(SICI)1097-4547(20000301) 59:5<649::AID-JNR8>3.0.CO;2-W 33. Waters MJ, Hoang HN, Fairlie DP, Pelekanos RA, Brown RJ. New insights into growth hormone action. J Mol Endocrinol (2006) 36(1):1–7. doi: 10.1677/jme.1.01933 53. Nishijima T, Piriz J, Duflot S, Fernandez AM, Gaitan G, Gomez-Pinedo U, et al. Neuronal Activity Drives Localized Blood-Brain-Barrier Transport of Serum Insulin-like Growth Factor-I into the CNS. Neuron (2010) 67(5):834– 46. doi: 10.1016/j.neuron.2010.08.007 34. Brooks AJ, Waters MJ. The growth hormone receptor: mechanism of activation and clinical implications. Nat Rev Endocrinol (2010) 6(9):515– 25. doi: 10.1038/nrendo.2010.123 35. Lopez-Fernandez J, Sanchez-Franco F, Velasco B, Tolon RM, Pazos F, Cacicedo L. Growth hormone induces somatostatin and insulin-like growth factor I gene expression in the cerebral hemispheres of aging rats. Endocrinology (1996) 137(10):4384–91. doi: 10.1210/endo.137.10.8828499 54. Carro E, Spuch C, Trejo JL, Antequera D, Torres-Aleman I. Choroid plexus megalin is involved in neuroprotection by serum insulin-like growth factor I. J Neurosci (2005) 25(47):10884–93. doi: 10.1523/JNEUROSCI.2909-05.2005 55. De Geyter D, De Smedt A, Stoop W, De Keyser J, Kooijman R. Central IGF-I Receptors in the Brain are Instrumental to Neuroprotection by Systemically Injected IGF-I in a Rat Model for Ischemic Stroke. CNS Neurosci Ther (2016) 22(7):611–6. doi: 10.1111/cns.12550 36. Ye P, Umayahara Y, Ritter D, Bunting T, Auman H, Rotwein P, et al. Regulation of insulin-like growth factor I (IGF-I) gene expression in brain of transgenic mice expressing an IGF-I-luciferase fusion gene. Endocrinology (1997) 138(12):5466–75. REFERENCES Endocrinology (2005) 146 (3):1138–44. doi: 10.1210/en.2004-1115 44. Wakao H, Chida D, Damen JE, Krystal G, Miyajima A. A possible involvement of Stat5 in erythropoietin-induced hemoglobin synthesis. Biochem Biophys Res Commun (1997) 234(1):198–205. doi: 10.1006/ bbrc.1997.6486 63. Wrigley S, Arafa D, Tropea D. Insulin-Like Growth Factor 1: At the Crossroads of Brain Development and Aging. Front Cell Neurosci (2017) 11:14(14):1–15. doi: 10.3389/fncel.2017.00014 45. Sano S, Inoue S, Tanabe Y, Sumiya C, Koike S. Significance of Mitochondria for Porphyrin and Heme Biosynthesis. Sci (New York NY) (1959) 129 (3344):275. doi: 10.1126/science.129.3344.275 64. Kadri Z, Lefevre C, Goupille O, Penglong T, Granger-Locatelli M, Fucharoen S, et al. Erythropoietin and IGF-1 signaling synchronize cell proliferation and maturation during erythropoiesis. Genes Dev (2015) 29(24):2603–16. doi: 10.1101/gad.267633.115 46. Dyer AH, Vahdatpour C, Sanfeliu A, Tropea D. The role of Insulin-Like Growth Factor 1 (IGF-1) in brain development, maturation and neuroplasticity. Neuroscience (2016) 325:89–99. doi: 10.1016/j.neuroscience. 2016.03.056 65. Xie Y, Shi X, Sheng K, Han G, Li W, Zhao Q, et al. PI3K/Akt signaling transduction pathway, erythropoiesis and glycolysis in hypoxia (Review). Mol Med Rep (2019) 19(2):783–91. doi: 10.3892/mmr.2018.9713 47. Sjogren K, Liu JL, Blad K, Skrtic S, Vidal O, Wallenius V, et al. Liver-derived insulin-like growth factor I (IGF-I) is the principal source of IGF-I in blood but is not required for postnatal body growth in mice. Proc Natl Acad Sci U S A (1999) 96(12):7088–92. doi: 10.1073/pnas.96.12.7088 66. Knight ZA, Schmidt SF, Birsoy K, Tan K, Friedman JM. A critical role for mTORC1 in erythropoiesis and anemia. Elife (2014) 3:e01913–e. doi: 10.7554/eLife.01913 48. Isgaard J, Moller C, Isaksson OG, Nilsson A, Mathews LS, Norstedt G. Regulation of insulin-like growth factor messenger ribonucleic acid in rat growth plate by growth hormone. Endocrinology (1988) 122(4):1515–20. doi: 10.1210/endo-122-4-1515 67. Yates SC, Zafar A, Hubbard P, Nagy S, Durant S, Bicknell R, et al. Dysfunction of the mTOR pathway is a risk factor for Alzheimer’s disease. Acta Neuropathol Commun (2013) 1:3. doi: 10.1186/2051-5960-1-3 a Neuropathol Commun (2013) 1:3. doi: 10.1186/2051-5960-1-3 49. Isgaard J, Nilsson A, Vikman K, Isaksson OG. Growth hormone regulates the level of insulin-like growth factor-I mRNA in rat skeletal muscle. J Endocrinol (1989) 120(1):107–12. doi: 10.1677/joe.0.1200107 68. Zelzer E, Levy Y, Kahana C, Shilo BZ, Rubinstein M, Cohen B. Insulin induces transcription of target genes through the hypoxia-inducible factor HIF-1alpha/ARNT. EMBO J (1998) 17(17):5085–94. doi: 10.1093/emboj/ 17.17.5085 50. Bondy CA. REFERENCES doi: 10.1210/endo.138.12.5600 56. Guan J, Miller OT, Waugh KM, McCarthy DC, Gluckman PD. Insulin-like growth factor-1 improves somatosensory function and reduces the extent of cortical infarction and ongoing neuronal loss after hypoxia-ischemia in rats. Neuroscience (2001) 105(2):299–306. doi: 10.1016/S0306-4522(01)00145-2 37. Pan W, Yu Y, Cain CM, Nyberg F, Couraud PO, Kastin AJ. Permeation of growth hormone across the blood-brain barrier. Endocrinology (2005) 146 (11):4898–904. doi: 10.1210/en.2005-0587 oscience (2001) 105(2):299–306. doi: 10.1016/S0306-4522(01)0014 38. Lobie PE, Garcia-Aragon J, Lincoln DT, Barnard R, Wilcox JN, Waters MJ. Localization and ontogeny of growth hormone receptor gene expression in the central nervous system. Brain Res Dev Brain Res (1993) 74(2):225–33. doi: 10.1016/0165-3806(93)90008-X 57. Guan J, Bennet L, Gluckman PD, Gunn AJ. Insulin-like growth factor-1 and post-ischemic brain injury. Prog Neurobiol (2003) 70(6):443–62. doi: 10.1016/j.pneurobio.2003.08.002 58. Lin S, Fan LW, Pang Y, Rhodes PG, Mitchell HJ, Cai Z. IGF-1 protects oligodendrocyte progenitor cells and improves neurological functions following cerebral hypoxia-ischemia in the neonatal rat. Brain Res (2005) 1063(1):15–26. doi: 10.1016/j.brainres.2005.09.042 39. Waters MJ. The growth hormone receptor. Growth Horm Igf Res (2016) 28:6–10. doi: 10.1016/j.ghir.2015.06.001 1063(1):15–26. doi: 10.1016/j.brainres.2005.09.042 40. Kopchick JJ. Lessons learned from studies with the growth hormone receptor. Growth Hormone IGF Res (2016) 28:21–5. doi: 10.1016/ j.ghir.2015.06.003 59. Kooijman R, Sarre S, Michotte Y, De Keyser J. Insulin-like growth factor I: a potential neuroprotective compound for the treatment of acute ischemic stroke? Stroke (2009) 40(4):e83–8. doi: 10.1161/strokeaha.108.528356 41. Frank SJ. Receptor dimerization in GH and erythropoietin action–it takes two to tango, but how? Endocrinology (2002) 143(1):2–10. doi: 10.1210/ endo.143.1.8607 60. Sun LY, Al-Regaiey K, Masternak MM, Wang J, Bartke A. Local expression of GH and IGF-1 in the hippocampus of GH-deficient long-lived mice. Neurobiol Aging (2005) 26(6):929–37. doi: 10.1016/j.neurobiolaging. 2004.07.010 42. Furigo IC, Metzger M, Teixeira PD, Soares CR, Donato J Jr. Distribution of growth hormone-responsive cells in the mouse brain. Brain Struct Funct (2017) 222(1):341–63. doi: 10.1007/s00429-016-1221-1 61. Hojvat S, Baker G, Kirsteins L, Lawrence AM. Growth hormone (GH) immunoreactivity in the rodent and primate CNS: distribution, characterization and presence posthypophysectomy. Brain Res (1982) 239 (2):543–57. doi: 10.1016/0006-8993(82)90529-7 43. Grebien F, Kerenyi MA, Kovacic B, Kolbe T, Becker V, Dolznig H, et al. Stat5 activation enables erythropoiesis in the absence of EpoR and Jak2. Blood (2008) 111(9):4511–22. doi: 10.1182/blood-2007-07-102848 62. Sun LY, Evans MS, Hsieh J, Panici J, Bartke A. Increased neurogenesis in dentate gyrus of long-lived Ames dwarf mice. REFERENCES Transient IGF-I gene expression during the maturation of functionally related central projection neurons. J Neurosci (1991) 11 (11):3442–55. doi: 10.1523/jneurosci.11-11-03442.1991 69. Fisher JW. Erythropoietin: physiology and pharmacology update. Exp Biol Med (Maywood NJ) (2003) 228(1):1–14. doi: 10.1177/153537020322800101 51. Åberg ND, Brywe KG, Isgaard J. Aspects of growth hormone and insulin- like growth factor-I related to neuroprotection, regeneration, and functional plasticity in the adult brain. ScientificWorldJournal (2006) 6:53–80. doi: 10.1100/tsw.2006.22 70. Anttila R, Koistinen R, Seppala M, Koistinen H, Siimes MA. Insulin-like growth factor I and insulin-like growth factor binding protein 3 as determinants of blood hemoglobin concentration in healthy subjects. Pediatr Res (1994) 36(6):745–8. doi: 10.1203/00006450-199412000-00011 January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org Growth Hormone, Hemoglobin, and the Brain Walser et al. 71. Duron E, Vidal J-S, Funalot B, Brunel N, Viollet C, Rigaud A-S, et al. Insulin- Like Growth Factor-I, Insulin-Like Growth factor Binding Protein-3 and Blood Hemoglobin Concentration in an Elderly Population. Journals Gerontol: Ser A (2014) 70(7):854–9. doi: 10.1093/gerona/glu200 88. Walser M, Schioler L, Oscarsson J, Aberg MA, Svensson J, Åberg ND, et al. Different modes of GH administration influence gene expression in the male rat brain. J Endocrinol (2014) 222(2):181–90. doi: 10.1530/JOE-14-0223 89. Walser M, Schioler L, Oscarsson J, Aberg MA, Wickelgren R, Svensson J, et al. Mode of GH administration and gene expression in the female rat brain. J Endocrinol (2017) 233(2):187–96. doi: 10.1530/joe-16-0656 72. Koc E, Bideci A, Cinaz P, Unlu M, Atalay Y, Turkyilmaz C. Insulin-like growth factor (IGF)-I and IGF-binding protein-3 in relation to hemoglobin concentration in healthy term infants. J Pediatr Endocrinol Metab JPEM (1997) 10(6):609–13. doi: 10.1515/jpem.1997.10.6.609 90. Walser M, Hansen A, Svensson PA, Jernas M, Oscarsson J, Isgaard J, et al. Peripheral administration of bovine GH regulates the expression of cerebrocortical beta-globin, GABAB receptor 1, and the Lissencephaly-1 protein (LIS-1) in adult hypophysectomized rats. Growth Horm Igf Res (2011) 21(1):16–24. doi: 10.1016/j.ghir.2010.11.002 73. Succurro E, Arturi F, Caruso V, Rudi S, Sciacqua A, Andreozzi F, et al. Low insulin-like growth factor-1 levels are associated with anaemia in adult non- diabetic subjects. Thromb Haemostasis (2011) 105(2):365–70. doi: 10.1160/ th10-06-0379 91. Walser M, Oscarsson J, Aberg MAI, Svensson J, Isgaard J, Aberg ND. Effects of peripheral administration of GH and IGF-I on gene expression in the hippocampus of hypophysectomised rats. Neuro Endocrinol Lett (2019) 39 (7):525–31. 74. REFERENCES Trends Neurosci (1999) 22(9):391–7. doi: 10.1016/s0166- 2236(99)01401-0 99. McCabe C, Arroja MM, Reid E, Macrae IM. Animal models of ischaemic stroke and characterisation of the ischaemic penumbra. Neuropharmacology (2018) 134(Pt B):169–77. doi: 10.1016/j.neuropharm.2017.09.022 80. Sackmann-Sala L, Ding J, Frohman LA, Kopchick JJ. Activation of the GH/ IGF-1 axis by CJC-1295, a long-acting GHRH analog, results in serum protein profile changes in normal adult subjects. Growth Horm Igf Res (2009) 19(6):471–7. doi: 10.1016/j.ghir.2009.03.001 100. Sims NR, Muyderman H. Mitochondria, oxidative metabolism and cell death in stroke. Biochim Biophys Acta (2010) 1802(1):80–91. doi: 10.1016/ j.bbadis.2009.09.003 81. Nilsson-Ehle H, Bengtsson BA, Lindstedt G, Mellstrom D. Insulin-like growth factor-1 is a predictor of blood haemoglobin concentration in 70- yr-old subjects. Eur J Haematol (2005) 74(2):111–6. doi: 10.1111/j.1600- 0609.2004.00374.x 101. He Y, Hua Y, Liu W, Hu H, Keep RF, Xi G. Effects of cerebral ischemia on neuronal hemoglobin. J Cereb Blood Flow Metab (2009) 29(3):596–605. doi: 10.1038/jcbfm.2008.145 82. Sohmiya M, Kato Y. Effect of long-term administration of recombinant human growth hormone (rhGH) on plasma erythropoietin (EPO) and haemoglobin levels in anaemic patients with adult gh deficiency. Clin Endocrinol (2001) 55(6):749–54. doi: 10.1046/j.1365-2265.2001.01417.x 102. Amri F, Ghouili I, Tonon M-C, Amri M, Masmoudi-Kouki O. Hemoglobin- Improved Protection in Cultured Cerebral Cortical Astroglial Cells: Inhibition of Oxidative Stress and Caspase Activation. Front Endocrinol (2017) 8:67. doi: 10.3389/fendo.2017.00067 83. Jepson JH, McGarry EE. Hemopoiesis in pituitary dwarfs treated with human growth hormone and testosterone. Blood (1972) 39(2):229–48. doi: 10.1182/blood.V39.2.238.238 103. Xi G, Keep RF, Hoff JT. Mechanisms of brain injury after intracerebral haemorrhage. Lancet Neurol (2006) 5(1):53–63. doi: 10.1016/s1474-4422(05) 70283-0 84. Kurtz A, Zapf J, Eckardt KU, Clemons G, Froesch ER, Bauer C. Insulin- like growth factor I stimulates erythropoiesis in hypophysectomized rats. Proc Natl Acad Sci U.S.A. (1988) 85(20):7825–9. doi: 10.1073/pnas. 85.20.7825 104. Regan RF, Panter SS. Neurotoxicity of hemoglobin in cortical cell culture. Neurosci Lett (1993) 153(2):219–22. doi: 10.1016/0304-3940(93)90326-G 105. Wang X, Mori T, Sumii T, Lo EH. Hemoglobin-induced cytotoxicity in rat cerebral cortical neurons: caspase activation and oxidative stress. Stroke (2002) 33(7):1882–8. doi: 10.1161/01.STR.0000020121.41527.5D 85. Åberg D, Jood K, Blomstrand C, Jern C, Nilsson M, Isgaard J, et al. Serum IGF-I levels correlate to improvement of functional outcome after ischemic stroke. J Clin Endocrinol Metab (2011) 96(7):E1055–64. doi: 10.1210/ jc.2010-2802 106. Huang FP, Xi G, Keep RF, Hua Y, Nemoianu A, Hoff JT. Brain edema after experimental intracerebral hemorrhage: role of hemoglobin degradation products. REFERENCES Ten Have SM, van der Lely AJ, Lamberts SW. Increase in haemoglobin concentrations in growth hormone deficient adults during human recombinant growth hormone replacement therapy. Clin Endocrinol (Oxf) (1997) 47(5):565–70. doi: 10.1046/j.1365-2265.1997.3241124.x 92. Cruz-Topete D, Christensen B, Sackmann-Sala L, Okada S, Jorgensen JOL, Kopchick JJ. Serum proteome changes in acromegalic patients following transsphenoidal surgery: Novel biomarkers of disease activity. Eur J Endocrinol (2011) 164(2):157–67. doi: 10.1530/EJE-10-0754 75. Soliman AT, De Sanctis V, Yassin M, Adel A. Growth and Growth hormone - Insulin Like Growth Factor -I (GH-IGF-I) Axis in Chronic Anemias. Acta Bio Medica Atenei Parmensis (2017) 88(1):101–11. doi: 10.23750/ abm.v88i1.5744 93. Sadlon TJ, Dell’Oso T, Surinya KH, May BK. Regulation of erythroid 5- aminolevulinate synthase expression during erythropoiesis. Int J Biochem Cell Biol (1999) 31(10):1153–67. doi: 10.1016/S1357-2725(99)00073-4 76. Miniero R, Altomare F, Rubino M, Matarazzo P, Montanari C, Petri A, et al. Effect of recombinant human growth hormone (rhGH) on hemoglobin concentration in children with idiopathic growth hormone deficiency- related anemia. J Pediatr Hematol/Oncol (2012) 34(6):407–11. doi: 10.1097/MPH.0b013e318253f082 94. Chawengsub Y, Gauthier KM, Campbell WB. Role of arachidonic acid lipoxygenase metabolites in the regulation of vascular tone. Am J Physiol Heart Circulatory Physiol (2009) 297(2):H495–507. doi: 10.1152/ ajpheart.00349.2009 77. Vihervuori E, Virtanen M, Koistinen H, Koistinen R, Seppala M, Siimes MA. Hemoglobin level is linked to growth hormone-dependent proteins in short children. Blood (1996) 87(5):2075–81. doi: 10.1182/blood.V87.5.2075. bloodjournal8752075 95. Crafts RC, Meineke HA. The anemia of hypophysectomized animals. Ann N Y Acad Sci (1959) 77:501–17. doi: 10.1111/j.1749-6632.1959.tb36922.x 96. Goodman HM, Grichting G. Growth hormone and lipolysis: a reevaluation. Endocrinology (1983) 113(5):1697–702. doi: 10.1210/endo-113-5-1697 78. Esposito A, Capalbo D, De Martino L, Rezzuto M, Di Mase R, Pignata C, et al. Long-term effects of growth hormone (GH) replacement therapy on hematopoiesis in a large cohort of children with GH deficiency. Endocrine (2016) 53(1):192–8. doi: 10.1007/s12020-015-0781-9 97. Olsson B, Bohlooly YM, Fitzgerald SM, Frick F, Ljungberg A, Ahren B, et al. Bovine growth hormone transgenic mice are resistant to diet-induced obesity but develop hyperphagia, dyslipidemia, and diabetes on a high-fat diet. Endocrinology (2005) 146(2):920–30. doi: 10.1210/en.2004-1232 79. Ciresi A, Piazza G, Radellini S, Guarnotta V, Mineo MG, Giordano C. Growth hormone and hematopoiesis: A retrospective analysis on a large cohort of children with growth hormone deficiency. Growth Horm Igf Res (2018) 42-43:8–13. doi: 10.1016/j.ghir.2018.07.005 98. Dirnagl U, Iadecola C, Moskowitz MA. Pathobiology of ischaemic stroke: an integrated view. REFERENCES Mangiola A, Vigo V, Anile C, De Bonis P, Marziali G, Lofrese G. Role and Importance of IGF-1 in Traumatic Brain Injuries. BioMed Res Int (2015) 2015:736104. doi: 10.1155/2015/736104 112. Kannel WB, Gordon T, Wolf PA, McNamara P. Hemoglobin and the risk of cerebral infarction: the Framingham Study. Stroke (1972) 3(4):409–20. doi: 10.1161/01.str.3.4.409 131. Mossberg KA, Durham WJ, Zgaljardic DJ, Gilkison CR, Danesi CP, Sheffield-Moore M, et al. Functional Changes after Recombinant Human Growth Hormone Replacement in Patients with Chronic Traumatic Brain Injury and Abnormal Growth Hormone Secretion. J Neurotrauma (2017) 34 (4):845–52. doi: 10.1089/neu.2016.4552 113. Hultcrantz M, Modlitba A, Vasan SK, Sjolander A, Rostgaard K, Landgren O, et al. Hemoglobin concentration and risk of arterial and venous thrombosis in 1.5 million Swedish and Danish blood donors. Thromb Res (2020) 186:86– 92. doi: 10.1016/j.thromres.2019.12.011 132. Maric NP, Doknic M, Pavlovic D, Pekic S, Stojanovic M, Jasovic-Gasic M, et al. Psychiatric and neuropsychological changes in growth hormone- deficient patients after traumatic brain injury in response to growth hormone therapy. J Endocrinol Invest (2010) 33(11):770–5. doi: 10.3275/ 704510.1007/BF03350340 114. Gustafson K, Hagberg H, Bengtsson BA, Brantsing C, Isgaard J. Possible protective role of growth hormone in hypoxia-ischemia in neonatal rats. Pediatr Res (1999) 45(3):318–23. doi: 10.1203/00006450-199903000-00005 115. Pathipati P, Surus A, Williams CE, Scheepens A. Delayed and chronic treatment with growth hormone after endothelin-induced stroke in the adult rat. Behav Brain Res (2009) 204(1):93–101. doi: 10.1016/ j.bbr.2009.05.023 133. Devesa J, Reimunde P, Devesa P, Barbera M, Arce V. Growth hormone (GH) and brain trauma. Horm Behav (2013) 63(2):331–44. doi: 10.1016/ j.yhbeh.2012.02.022 116. Ong LK, Chow WZ, TeBay C, Kluge M, Pietrogrande G, Zalewska K, et al. Growth Hormone Improves Cognitive Function After Experimental Stroke. Stroke (2018) 49(5):1257–66. doi: 10.1161/strokeaha.117.020557 134. Madathil SK, Carlson SW, Brelsfoard JM, Ye P, D’Ercole AJ, Saatman KE. Astrocyte-Specific Overexpression of Insulin-Like Growth Factor-1 Protects Hippocampal Neurons and Reduces Behavioral Deficits following Traumatic Brain Injury in Mice. PloS One (2013) 8(6):e67204. doi: 10.1371/ journal.pone.0067204 117. Sanchez-Bezanilla S, Aberg ND, Crock P, Walker FR, Nilsson M, Isgaard J, et al. Growth Hormone Promotes Motor Function after Experimental Stroke and Enhances Recovery-Promoting Mechanisms within the Peri-Infarct Area. Int J Mol Sci (2020) 21(2):1–20. doi: 10.3390/ijms21020606 135. Ferrer I, Gómez A, Carmona M, Huesa G, Porta S, Riera-Codina M, et al. Neuronal hemoglobin is reduced in Alzheimer’s disease, argyrophilic grain disease, Parkinson’s disease, and Dementia with Lewy bodies. REFERENCES J Alzheimer’s Dis (2011) 23(3):537–50. doi: 10.3233/jad-2010-101485 118. Feng X, Li G, Wu W, Xu Y, Lin H, Fan J. Recombinant Human Growth Hormone Ameliorates Cognitive Impairment in Stroke Patients. J Comput Assist Tomogr (2020) 44(2):255–61. doi: 10.1097/rct.0000000000000990 119. Gluckman PD, Guan J, Williams C, Scheepens A, Zhang R, Bennet L, et al. Asphyxial brain injury–the role of the IGF system. Mol Cell Endocrinol (1998) 140(1-2):95–9. doi: 10.1016/S0303-7207(98)00035-5 136. Plassman BL, Havlik RJ, Steffens DC, Helms MJ, Newman TN, Drosdick D, et al. Documented head injury in early adulthood and risk of Alzheimer’s disease and other dementias. Neurology (2000) 55(8):1158–66. doi: 10.1212/ wnl.55.8.1158 120. Sizonenko SV, Sirimanne ES, Williams CE, Gluckman PD. Neuroprotective effects of the N-terminal tripeptide of IGF-1, glycine-proline-glutamate, in the immature rat brain after hypoxic-ischemic injury. Brain Res (2001) 922 (1):42–50. doi: 10.1016/S0006-8993(01)03148-1 137. Sivanandam TM, Thakur MK. Traumatic brain injury: a risk factor for Alzheimer’s disease. Neurosci Biobehav Rev (2012) 36(5):1376–81. doi: 10.1016/j.neubiorev.2012.02.013 121. Zhong J, Zhao L, Du Y, Wei G, Yao WG, Lee WH. Delayed IGF-1 treatment reduced long-term hypoxia-ischemia-induced brain damage and improved behavior recovery of immature rats. Neurol Res (2009) 31(5):483–9. doi: 10.1179/174313208x338133 138. Zhou J, Yu J-T, Wang H-F, Meng X-F, Tan C-C, Wang J, et al. Association between stroke and Alzheimer’s disease: systematic review and meta- analysis. J Alzheimer’s Dis JAD (2015) 43(2):479. doi: 10.3233/JAD-140666 139. Vickers JC, Mitew S, Woodhouse A, Fernandez-Martos CM, Kirkcaldie MT, Canty AJ, et al. Defining the earliest pathological changes of Alzheimer’s disease. Curr Alzheimer Res (2016) 13(3):281–7. doi: 10.2174/ 1567205013666151218150322 122. Aberg ND, Aberg D, Jood K, Nilsson M, Blomstrand C, Kuhn HG, et al. Altered levels of circulating insulin-like growth factor I (IGF-I) following ischemic stroke are associated with outcome - a prospective observational study. BMC Neurol (2018) 18(1):106. doi: 10.1186/s12883-018-1107-3 140. Johansson P, Mattsson N, Hansson O, Wallin A, Johansson JO, Andreasson U, et al. Cerebrospinal fluid biomarkers for Alzheimer’s disease: diagnostic performance in a homogeneous mono-center population. J Alzheimers Dis (2011) 24(3):537–46. doi: 10.3233/jad-2011-101878 123. Denti L, Annoni V, Cattadori E, Salvagnini MA, Visioli S, Merli MF, et al. Insulin-like growth factor 1 as a predictor of ischemic stroke outcome in the elderly. Am J Med (2004) 117(5):312–7. doi: 10.1016/j.amjmed. 2004.02.049 141. 2016 Alzheimer’s disease facts and figures. Alzheimers Dement (2016) 12 (4):459–509. doi: 10.1016/j.jalz.2016.03.001 124. Bondanelli M, Ambrosio MR, Carli A, Bergonzoni A, Bertocchi A, Zatelli MC, et al. REFERENCES J Neurosurg (2002) 96(2):287–93. doi: 10.3171/jns.2002.96.2.0287 86. Yan H, Mitschelen M, Bixler GV, Brucklacher RM, Farley JA, Han S, et al. Circulating insulin-like growth factor (IGF)-1 regulates hippocampal IGF-1 levels and brain gene expression during adolescence. J Endocrinol (2011) 211 (1):27–37. doi: 10.1530/JOE-11-0200 107. Freed J, Chakrabarti L. Defining a role for hemoglobin in Parkinson’s disease. NPJ Parkinson’s Dis (2016) 2:16021. doi: 10.1038/npjparkd.2016.21 108. Barlas RS, Honney K, Loke YK, McCall SJ, Bettencourt-Silva JH, Clark AB, et al. Impact of Hemoglobin Levels and Anemia on Mortality in Acute Stroke: Analysis of UK Regional Registry Data, Systematic Review, and Meta-Analysis. J Am Heart Assoc (2016) 5(8):1–16. doi: 10.1161/ jaha.115.003019 87. Csiszar A, Labinskyy N, Perez V, Recchia FA, Podlutsky A, Mukhopadhyay P, et al. Endothelial function and vascular oxidative stress in long-lived GH/IGF- deficient Ames dwarf mice. Am J Physiol Heart Circulatory Physiol (2008) 295(5):H1882–94. doi: 10.1152/ajpheart.412.2008 January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 12 Growth Hormone, Hemoglobin, and the Brain Walser et al. Stroke Assoc (2016) 25(7):1800–6. doi: 10.1016/j.jstrokecerebrovasdis. 2016.03.054 109. Milionis H, Papavasileiou V, Eskandari A, D’Ambrogio-Remillard S, Ntaios G, Michel P. Anemia on admission predicts short- and long-term outcomes in patients with acute ischemic stroke. Int J Stroke (2015) 10(2):224–30. doi: 10.1111/ijs.12397 Stroke Assoc (2016) 25(7):1800–6. doi: 10.1016/j.jstrokecerebrovasdis. 2016.03.054 127. Baltazar GA, Pate AJ, Panigrahi B, Sharp A, Smith M, Chendrasekhar A. Higher haemoglobin levels and dedicated trauma admission are associated with survival after severe traumatic brain injury. Brain Inj (2015) 29(5):607– 11. doi: 10.3109/02699052.2015.1004558 110. Kimberly WT, Wu O, Arsava EM, Garg P, Ji R, Vangel M, et al. Lower hemoglobin correlates with larger stroke volumes in acute ischemic stroke. Cerebrovasc Dis Extra (2011) 1(1):44–53. doi: 10.1159/000328219 128. Litofsky NS, Martin S, Diaz J, Ge B, Petroski G, Miller DC, et al. The Negative Impact of Anemia in Outcome from Traumatic Brain Injury. World Neurosurg (2016) 90:82–90. doi: 10.1016/j.wneu.2016.02.076 111. Kellert L, Martin E, Sykora M, Bauer H, Gussmann P, Diedler J, et al. Cerebral oxygen transport failure?: Decreasing hemoglobin and hematocrit levels after ischemic stroke predict poor outcome and mortality: Stroke: relevant impact of hemoglobin, hematocrit and transfusion (STRAIGHT) - An observational study. Stroke (2011) 42(10):2832–7. doi: 10.1161/ STROKEAHA.110.606665 129. Travers S, Martin S, Litofsky NS. The effects of anaemia and transfusion on patients with traumatic brain injury: A review. Brain Inj (2016) 30(13- 14):1525–32. doi: 10.1080/02699052.2016.1199907 130. REFERENCES Predictors of pituitary dysfunction in patients surviving ischemic stroke. J Clin Endocrinol Metab (2010) 95(10):4660–8. doi: 10.1210/jc.2010- 0611 142. Wu CW, Liao PC, Yu L, Wang ST, Chen ST, Wu CM, et al. Hemoglobin promotes Abeta oligomer formation and localizes in neurons and amyloid deposits. Neurobiol Dis (2004) 17(3):367–77. doi: 10.1016/j.nbd.2004.08.014 125. Aberg ND, Aberg D, Lagging C, Holmegaard L, Redfors P, Jood K, et al. Association Between Levels of Serum Insulin-like Growth Factor I and Functional Recovery, Mortality, and Recurrent Stroke at a 7-year Follow- up. Exp Clin Endocrinol Diabetes Off J German Soc Endocrinol [and] German Diabetes Association (2020) 128(5):303–10. doi: 10.1055/a-0833-8313 143. Chuang JY, Lee CW, Shih YH, Yang T, Yu L, Kuo YM. Interactions between amyloid-beta and hemoglobin: implications for amyloid plaque formation in Alzheimer’s disease. PloS One (2012) 7(3):e33120. doi: 10.1371/ journal.pone.0033120 144. Vanni S, Zattoni M, Moda F, Giaccone G, Tagliavini F, Haïk S, et al. Hemoglobin mRNA changes in the frontal cortex of patients with neurodegenerative diseases. Front Neurosci (2018) 12:8(JAN):1–12. doi: 10.3389/fnins.2018.00008 126. Mattlage AE, Rippee MA, Sandt J, Billinger SA. Decrease in Insulin-Like Growth Factor-1 and Insulin-Like Growth Factor-1 Ratio in the First Week of Stroke Is Related to Positive Outcomes. J Stroke Cerebrovasc Dis Off J Natl January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 13 Growth Hormone, Hemoglobin, and the Brain Walser et al. 145. Pandav RS, Chandra V, Dodge HH, DeKosky ST, Ganguli M. Hemoglobin Levels and Alzheimer Disease: An Epidemiologic Study in India. Am J Geriatric Psychiatry (2004) 12(5):523–6. doi: 10.1097/00019442-200409000- 00011 163. Horvath A, Salman Z, Quinlan P, Wallin A, Svensson J. Patients with Alzheimer’s Disease Have Increased Levels of Insulin-like Growth Factor-I in Serum but not in Cerebrospinal Fluid. J Alzheimers Dis (2020). doi: 10.3233/ jad-190921 146. Atti AR, Palmer K, Volpato S, Zuliani G, Winblad B, Fratiglioni L. Anaemia increases the risk of dementia in cognitively intact elderly. Neurobiol Aging (2006) 27(2):278–84. doi: 10.1016/j.neurobiolaging.2005.02.007 164. Procaccini C, Santopaolo M, Faicchia D, Colamatteo A, Formisano L, de Candia P, et al. Role of metabolism in neurodegenerative disorders. Metab: Clin Exp (2016) 65(9):1376–90. doi: 10.1016/j.metabol. 2016.05.018 147. Faux NG, Rembach A, Wiley J, Ellis KA, Ames D, Fowler CJ, et al. An anemia of Alzheimer’s disease. Mol Psychiatry (2014) 19(11):1227–34. doi: 10.1038/ mp.2013.178 165. Schweizer L, Mueller L. Chapter 7 - Protein Conformational Dynamics and Signaling in Evolution and Pathophysiology. REFERENCES In: Arey BJ, editor. Biased Signaling in Physiology, Pharmacology and Therapeutics. San Diego: Academic Press (2014). p. 209–49. 148. Wolters FJ, Zonneveld HI, Licher S, Cremers LGM, Ikram MK, Koudstaal PJ, et al. Hemoglobin and anemia in relation to dementia risk and accompanying changes on brain MRI. Neurology (2019) 93(9):e917–e26. doi: 10.1212/wnl.0000000000008003 166. Barbour R, Kling K, Anderson JP, Banducci K, Cole T, Diep L, et al. Red blood cells are the major source of alpha-synuclein in blood. Neuro Degenerative Dis (2008) 5(2):55–9. doi: 10.1159/000112832 149. Ishii K, Kitagaki H, Kono M, Mori E. Decreased medial temporal oxygen metabolism in Alzheimer’s disease shown by PET. J Nuclear Med Off Publication Soc Nuclear Med (1996) 37(7):1159–65. 167. Gomperts SN. Lewy Body Dementias: Dementia With Lewy Bodies and Parkinson Disease Dementia. Continuum (Minneapolis Minn) (2016) 22(2 Dementia):435–63. doi: 10.1212/con.0000000000000309 150. Svensson J, Diez M, Engel J, Wass C, Tivesten A, Jansson JO, et al. Endocrine, liver-derived IGF-I is of importance for spatial learning and memory in old mice. J Endocrinol (2006) 189(3):617–27. doi: 10.1677/ joe.1.06631 168. Sun TK, Chen YY, Huang SH, Hsu SW, Lee CC, Chang WN, et al. Neurotoxicity of carbon monoxide targets caudate-mediated dopaminergic system. Neurotoxicology (2018) 65:272–9. doi: 10.1016/j.neuro. 2017.11.007 151. Svensson J, Soderpalm B, Sjogren K, Engel J, Ohlsson C. Liver-derived IGF-I regulates exploratory activity in old mice. Am J Physiol Endocrinol Metab (2005) 289(3):E466–73. doi: 10.1152/ajpendo.00425.2004 169. Graham J, Hobson D, Ponnampalam A. High affinity hemoglobin and Parkinson’s disease. Med Hypotheses (2014) 83(6):819–21. doi: 10.1016/ j.mehy.2014.10.016 152. Carro E, Trejo JL, Gomez-Isla T, LeRoith D, Torres-Aleman I. Serum insulin-like growth factor I regulates brain amyloid-beta levels. Nat Med (2002) 8(12):1390–7. doi: 10.1038/nm1202-793 170. Yang W, Li X, Li X, Li X, Yu S. Neuronal hemoglobin in mitochondria is reduced by forming a complex with alpha-synuclein in aging monkey brains. Oncotarget (2016) 7(7):7441–54. doi: 10.18632/oncotarget.7046 153. Cheng CM, Tseng V, Wang J, Wang D, Matyakhina L, Bondy CA. Tau is hyperphosphorylated in the insulin-like growth factor-I null brain. Endocrinology (2005) 146(12):5086–91. doi: 10.1210/en.2005- 0063 171. Yang W, Li X, Li X, Yu S. Hemoglobin-a-synuclein complex exhibited age- dependent alterations in the human striatum and peripheral RBCs. Neurosci Lett (2020) 736:135274. doi: 10.1016/j.neulet.2020.135274 154. Dik MG, Pluijm SM, Jonker C, Deeg DJ, Lomecky MZ, Lips P. Insulin- like growth factor I (IGF-I) and cognitive decline in older persons. Neurobiol Aging (2003) 24(4):573–81. doi: 10.1016/s0197-4580(02) 00136-7 172. REFERENCES Katsumura KR, DeVilbiss AW, Pope NJ, Johnson KD, Bresnick EH. Transcriptional mechanisms underlying hemoglobin synthesis. Cold Spring Harbor Perspect Med (2013) 3(9):a015412. doi: 10.1101/ cshperspect.a015412 173. Chung JY, Lee SJ, Lee SH, Jung YS, Ha NC, Seol W, et al. Direct interaction of alpha-synuclein and AKT regulates IGF-1 signaling: implication of Parkinson disease. Neuro-Signals (2011) 19(2):86–96. doi: 10.1159/ 000325028 155. Watanabe T, Miyazaki A, Katagiri T, Yamamoto H, Idei T, Iguchi T. Relationship between serum insulin-like growth factor-1 levels and Alzheimer’s disease and vascular dementia. J Am Geriatr Society (2005) 53 (10):1748–53. doi: 10.1111/j.1532-5415.2005.53524.x 156. Carro E, Torres-Aleman I. The role of insulin and insulin-like growth factor I in the molecular and cellular mechanisms underlying the pathology of Alzheimer’s disease. Eur J Pharmacol (2004) 490(1-3):127–33. doi: 10.1016/j.ejphar.2004.02.050 174. Castilla-Cortazar I, Aguirre GA, Femat-Roldan G, Martin-Estal I, Espinosa L. Is insulin-like growth factor-1 involved in Parkinson’s disease development? J Transl Med (2020) 18(1):70. doi: 10.1186/s12967-020- 02223-0 175. Thomas Tayra J, Kameda M, Yasuhara T, Agari T, Kadota T, Wang F, et al. The neuroprotective and neurorescue effects of carbamylated erythropoietin Fc fusion protein (CEPO-Fc) in a rat model of Parkinson’s disease. Brain Res (2013) 1502:55–70. doi: 10.1016/j.brainres.2013.01.042 157. Fernandez AM, Torres-Aleman I. The many faces of insulin-like peptide signalling in the brain. Nat Rev Neurosci (2012) 13(4):225–39. doi: 10.1038/ nrn3209 158. Rivera EJ, Goldin A, Fulmer N, Tavares R, Wands JR, de la Monte SM. Insulin and insulin-like growth factor expression and function deteriorate with progression of Alzheimer’s disease: link to brain reductions in acetylcholine. J Alzheimers Dis (2005) 8(3):247–68. doi: 10.3233/jad-2005- 8304 176. Jellen LC, Lu L, Wang X, Unger EL, Earley CJ, Allen RP, et al. Iron deficiency alters expression of dopamine-related genes in the ventral midbrain in mice. Neuroscience (2013) 252:13–23. doi: 10.1016/j.neuroscience.2013.07.058 177. Li W, Jiang H, Song N, Xie J. Oxidative stress partially contributes to iron- induced alpha-synuclein aggregation in SK-N-SH cells. Neurotox Res (2011) 19(3):435–42. doi: 10.1007/s12640-010-9187-x 159. Steen E, Terry BM, Rivera EJ, Cannon JL, Neely TR, Tavares R, et al. Impaired insulin and insulin-like growth factor expression and signaling mechanisms in Alzheimer’s disease–is this type 3 diabetes? J Alzheimers Dis (2005) 7(1):63–80. doi: 10.3233/jad-2005-7107 178. Dexter DT, Carayon A, Javoy-Agid F, Agid Y, Wells FR, Daniel SE, et al. Alterations in the levels of iron, ferritin and other trace metals in Parkinson’s disease and other neurodegenerative diseases affecting the basal ganglia. REFERENCES Brain J Neurol (1991) 114(Pt 4):1953–75. doi: 10.1093/brain/114.4.1953 160. Talbot K, Wang H-Y, Kazi H, Han L-Y, Bakshi KP, Stucky A, et al. Demonstrated brain insulin resistance in Alzheimer’s disease patients is associated with IGF-1 resistance, IRS-1 dysregulation, and cognitive decline. J Clin Invest (2012) 122(4):1316–38. doi: 10.1172/JCI59903 179. Compston A, Coles A. Multiple sclerosis. Lancet (2008) 372(9648):1502–17. doi: 10.1016/s0140-6736(08)61620-7 180. Sarkijarvi S, Kuusisto H, Paalavuo R, Levula M, Airla N, Lehtimaki T, et al. Gene expression profiles in Finnish twins with multiple sclerosis. BMC Med Genet (2006) 7:11. doi: 10.1186/1471-2350-7-11 161. Johansson P, Aberg D, Johansson JO, Mattsson N, Hansson O, Ahren B, et al. Serum but not cerebrospinal fluid levels of insulin-like growth factor-I (IGF- I) and IGF-binding protein-3 (IGFBP-3) are increased in Alzheimer’s disease. Psychoneuroendocrinology (2013) 38(9):1729–37. doi: 10.1016/ j.psyneuen.2013.02.006 181. Broadwater L, Pandit A, Clements R, Azzam S, Vadnal J, Sulak M, et al. Analysis of the mitochondrial proteome in multiple sclerosis cortex. Biochim Biophys Acta (2011) 1812(5):630–41. doi: 10.1016/j.bbadis.2011.01.012 162. Trueba-Saiz A, Cavada C, Fernandez AM, Leon T, Gonzalez DA, Fortea Ormaechea J, et al. Loss of serum IGF-I input to the brain as an early biomarker of disease onset in Alzheimer mice. Trans Psychiatry (2013) 3: e330. doi: 10.1038/tp.2013.102 182. Altinoz MA, Ozcan EM, Ince B, Guloksuz S. Hemoglobins as new players in multiple sclerosis: metabolic and immune aspects. Metab Brain Dis (2016) 31 (5):983–92. doi: 10.1007/s11011-016-9845-7 January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 14 Walser et al. Growth Hormone, Hemoglobin, and the Brain 183. Koudriavtseva T, Renna R, Plantone D, Mandoj C, Piattella MC, Giannarelli D. Association between anemia and multiple sclerosis. Eur Neurol (2015) 73(3-4): 233–7. doi: 10.1159/000381212 Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. 184. Poljakovic Z, Zurak N, Brinar V, Korsic M, Basic S, Hajnsek S. Growth hormone and insulin growth factor-I levels in plasma and cerebrospinal fluid of patients with multiple sclerosis. Clin Neurol Neurosurg (2006) 108(3):255– 8. doi: 10.1016/j.clineuro.2005.11.014 Copyright © 2021 Walser, Svensson, Karlsson, Motalleb, Åberg, Kuhn, Isgaard and Åberg. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org REFERENCES The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. 185. Lanzillo R, Di Somma C, Quarantelli M, Ventrella G, Gasperi M, Prinster A, et al. Insulin-like growth factor (IGF)-I and IGF-binding protein-3 serum levels in relapsing-remitting and secondary progressive multiple sclerosis patients. Eur J Neurol (2011) 18(12):1402–6. doi: 10.1111/j.1468-1331.2011.03433.x January 2021 | Volume 11 | Article 606089 Frontiers in Endocrinology | www.frontiersin.org 15
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Thinking too much: How young people experience rumination in the context of loneliness
Journal of community & applied social psychology
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Thinking too much: How young people experience rumination in the context of loneliness Rumi Chloe Yun | Sam Fardghassemi | Hélène Joffe Division of Psychology and Language Sciences, University College London, London, UK Correspondence Rumi Chloe Yun, Division of Psychology and Language Sciences, University College London, London, UK. Email: rumi chloe yun@gmail com R E S E A R C H A R T I C L E R E S E A R C H A R T I C L E Received: 27 October 2021 Revised: 20 April 2022 Accepted: 7 June 2022 DOI: 10.1002/casp.2635 Received: 27 October 2021 Revised: 20 April 2022 Accepted: 7 June 2022 DOI: 10.1002/casp.2635 J Community Appl Soc Psychol. 2022;1–21. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2022 The Authors. Journal of Community & Applied Social Psychology published by John Wiley & Sons Ltd. R E S E A R C H A R T I C L E 1 | INTRODUCTION Loneliness is a universally observed human phenomenon; we are a social species and satisfying social relationships are essential for our mental and physical wellbeing. Conversely, the impairment of these relationships can lead to subjective feelings of loneliness (Andersson, 2010). Loneliness has also been thought to be a result of evolutionary forces: social isolation threatens the health, life and genetic legacy of social species. Thus, loneliness has been theorized to serve an adaptive function against social isolation and its adverse consequences (Cacioppo, Cacioppo, & Boomsma, 2013) by prompting individuals to seek social relationships and connections. The number of people who experience loneliness appears to be growing rapidly (King, 2018), especially in industrialized societies where approxi- mately a third of the population is affected by loneliness (Cacioppo & Cacioppo, 2018), giving credence to the term ‘the loneliness epidemic’. The present study explores a key aspect of loneliness: its link to rumination. It examines this link and deciphers the content of ruminative thoughts experienced during bouts of loneliness in young adults, who are currently one of the loneliest groups in Western countries (Fardghassemi & Joffe, 2021). Loneliness is defined as the emotional distress arising from the perception that one's social needs are not being satisfied by the quality or quantity of one's social relationships (Pinquart & Sorensen, 2010; Wheeler, Reis, & Nezlek, 1983). The subjective nature of loneliness means that individuals can feel lonely not only when they are physically isolated, but even when they are among others with whom they do not feel a strong social connection. Apart from the emotional distress accompanying the experience of loneliness, loneliness is also associated with a number of deleterious effects on physical and mental health. Focusing on mental health, loneliness has been linked to personality disorders and psychoses (De Niro, 1995; Richman & Sokolove, 1992), impaired cognitive performance (Gow, Pattie, Whiteman, Whalley, & Deary, 2007), suicide (Goldsmith, Pellman, Kleinman, & Bunney, 2002), impaired executive control (Hawkley, Thisted, & Cacioppo, 2009) and increased depressive symptoms (Wei, Russell, & Zakalik, 2005). In the face of the rising prevalence of loneliness and its deleterious impacts on mental and physical health (Rico- Uribe et al., 2018), loneliness poses a growing public health problem. This highlights the pressing need to better understand the experience of loneliness so that effective, targeted interventions can be designed to mitigate its adverse consequences. Abstract The recent rise in the prevalence of loneliness, particularly among young adults, coupled with its deleterious effects on wellbeing, makes understanding the issue of pressing con- cern. As most research on loneliness has focused on older adults, this study explored how 48 young adults aged 18–24 subjectively experienced loneliness through free association-based interviews. Participants were sampled from the four most deprived boroughs in London, as area deprivation has been associated with a higher prevalence of loneliness. This facilitates understanding of contributors and consequences of loneliness within this demographic group. In particular, the focus is on rumination arising from loneli- ness; while the link between the two is well-established quantitively, research into rumination and the context of ruminative thoughts in the context of loneliness remains sparse. Thus, this study aimed to understand the subjective experience of rumination in young adults whilst they experi- enced loneliness. Thematic analysis of interviews using ATLAS.ti 9 revealed five themes capturing these experi- ences: ‘temporal experience of rumination’, ‘ruminating life and death’, ‘rumination related to others’, ‘outcomes of rumination’ and ‘coping with loneliness-related rumination’. Based upon knowledge of the nature and content of rumi- nation, further research could devise models of rumination This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2022 The Authors. Journal of Community & Applied Social Psychology published by John Wiley & Sons Ltd. J Community Appl Soc Psychol. 2022;1–21. wileyonlinelibrary.com/journal/casp 1 2 2 2 YUN ET AL. YUN ET AL. and interventions targeted at rumination such as mindful- ness meditation, journaling and engaging in prosocial behav- iour, to mitigate the adverse effects loneliness can have on wellbeing. K E Y W O R D S loneliness, rumination, youth YUN ET AL. 3 conventionally thought to be a problem of old age, younger populations are often assumed to be less lonely due to being more socially connected (Victor & Yang, 2012). conventionally thought to be a problem of old age, younger populations are often assumed to be less lonely due to being more socially connected (Victor & Yang, 2012). While some evidence supports the aforementioned linear model (Lauder, Mummery, Jones, & Caperchione, 2006), more recent research indicates an increasingly complex, non-linear relationship between age and loneliness. Higher rates of loneliness have been reported in young adulthood and old age, with comparatively lower rates in early- to mid-adulthood, giving rise to a U-shaped distribution (Barreto et al., 2020; MacDonald, Wil- lemsen, Boomsma, & Schermer, 2020; Yang & Victor, 2011). Additionally, findings from a recent survey by the Office of National Statistics (2018) further highlighted and renewed interest in the high prevalence of loneliness in young adults, as well as the possible reasons for it. The survey found that young adults aged 16–24 in the United Kingdom experienced loneliness the most relative to other age groups, with 5% reporting experiencing loneliness ‘often’ or ‘always’ and 16% ‘sometimes’. Higher rates of loneliness within this group were associated with a weak sense of belonging to their neighbourhood, having little trust in their neighbours, as well as area deprivation. The high prevalence of loneliness in younger adults within this demographic group is garnering attention. In this age group, individuals tend to experience a myriad of developmental transitions, ranging from biological to social, as they become more independent (Crosnoe, 2000). These transitions may induce instability and emotional distress; having strong social relationships is critical in successfully making these transitions (Umberson & Montez, 2010). Apart from the aforementioned adverse effects on health, loneliness also plays a critical role in the development of young adults. Loneliness has also been found to influence many midlife outcomes such as education and labor mar- ket inclusion (Von Soest, Luhmann, & Gerstorf, 2020), further stressing the need to understand and develop inter- ventions to target loneliness in this demographic group. A number of other factors have been implicated as possible contributors to the higher prevalence of loneliness among young people. These include problematic technology use and adopting maladaptive strategies to cope with loneliness and stress, such as withdrawing from others and obsessing over problems, as opposed to seeking help or working towards resolving situations (Matthews et al., 2019). Other contributing factors include ‘the fear of missing out’ resulting from social media use (Hunt, Marx, Lipson, & Young, 2018) and a lack of social support (Lee & Goldstein, 2015). However, despite the existing literature on individual contributors to loneliness, a holistic understanding of lone- liness in young adults remains underdeveloped. While quantitative research has reliably found loneliness to predict rumination, with rumination mediating the adverse consequences of loneliness on wellbeing, little has been done to explore this relationship in detail or further delve into the content of the ruminative thoughts occurring specifically in the context of loneliness (Vanhalst, Luyckx, Raes, & Goossens, 2012; Zawadzki, Graham, & Gerin, 2013). 1.1 | Loneliness in young adults Research on loneliness has primarily focused on elderly populations. The model of a positive linear relationship between loneliness and age proposes that older individuals are more likely to experience loneliness as a result of not having regu- lar contact with their families, having to stay home due to an increased need for healthcare services, impaired physical functioning or bereavement of loved ones (Hazer & Boylu, 2010). Supporting this, evidence suggests that around 50% of individuals aged over 80 report frequent feelings of loneliness (Pinquart & Sorensen, 2003). Since loneliness is 4 YUN ET AL. YUN ET AL. solving to alleviate one's depressive symptoms. It serves a more adaptive function compared to the brooding compo- nent of rumination, which aligns more with the early RST model of rumination. The brooding component reflects a more passive comparison of an individual's current situation with an unachieved standard. In this revised model, rumination is still linked to depression. However, it is also found to have both adaptive and maladaptive functions in resolving distress, instead of the traditionally maladaptive conceptualization of the early model. Although the RST model of rumination is referred to most widely, a number of other models propose different definitions of rumination. For example, the Self-Regulatory Executive Function model conceptualizes it as recurring thoughts centred on self-referent information as opposed to immediate goal-directed action (Matthews & Wells, 2004), while the Goal Progress Theory refers to rumination as a ‘response to failure to progress satisfactorily towards a goal’ (Watkins, 2008). Other models such as the Stress Reactive Rumination model (Alloy et al., 2000) and the Post-Event Rumination model (Clark & Wells, 1995) conceptualize rumination to be focused on negative infer- ences associated with stressful life events and social interactions respectively. As evident from the above, there appear to be a number of theories of rumination varying in their predictions of the content of ruminative thoughts. However, a common characteristic of these definitions centres on rumination's link to distress and the potential cau- ses and consequences of rumination. 1.2 | Rumination According to Response Styles Theory (RST), the most widely referred-to model of rumination, rumination is a distress response that involves repetitively and passively focusing on symptoms of distress and the possible causes of these symptoms (Nolen-Hoeksema, Wisco, & Lyubomirsky, 2008). Rather than focusing on active problem solving, people who ruminate tend to fixate on the problems they face and their distress without taking action to solve them. In line with this theory, rumination has been associated with a variety of maladaptive cognitive styles (Ciesla & Roberts, 2002) and with depression after controlling for other negative cognitive coping styles (Flett, Madorsky, Hewitt, & Heisel, 2002; Spasojevic & Alloy, 2001). Additionally, it has also been found to mediate the relationship between depression and negative inferential styles (Nolan, Robert, & Gotlib, 1998). While pioneering studies have found evidence suggesting rumination is strongly linked to depression, more recent research on RST has led to further refinement of the theory, giving rise to a two-factor model of rumination (Treynor, Gonzalez, & Nolen-Hoeksema, 2003). The revised model proposes that rumination consists of two compo- nents; reflection and brooding. Reflection consists of introspective thoughts aimed at engaging in cognitive problem 1.4 | Research question How do young people subjectively experience rumination in the context of loneliness? 1.3 | Rumination and loneliness: The present study Regarding rumination in the context of loneliness, a number of quantitative studies have found loneliness to reliably predict rumination in young people (Vanhalst et al., 2012; Zawadzki et al., 2013). Interestingly, in these studies, rumi- nation mediated the adverse effects of loneliness on individual wellbeing via sleep and mood. These studies highlight the complex relationship between loneliness and rumination. While the link between rumination and loneliness has been extensively corroborated quantitatively (Gan, Xie, Duan, Deng, & Yu, 2015), there has been little qualitative research exploring the experience of rumination and the content of ruminative thoughts in the context of loneliness, which may reveal the nuances of the complex relationship between the two. While a number of studies have explored ruminative thoughts in various contexts such as trauma (Speckens, Ehlers, Hackmann, Ruths, & Clark, 2007), friendships (Rose, 2002) and anger episodes (Sukhodolsky, Golub, & Crom- well, 2001), the literature on the content of ruminative thoughts in the context of loneliness remains lacking. Hence, this study aims to qualitatively investigate how young people subjectively experience rumination in the context of loneliness. The findings of this study will provide potential insight into how to devise targeted interven- tions, centred on rumination to mitigate the adverse effects that loneliness can have on individual wellbeing. YUN ET AL. 5 neighbourhood. Participants consented to participate in the study after the details of the study were explained. Participants were recruited via an agency and received compensation for their participation. Ethical approval was granted by ethics board. neighbourhood. Participants consented to participate in the study after the details of the study were explained. Participants were recruited via an agency and received compensation for their participation. Ethical approval was granted by ethics board. 2.2 | Data collection In-depth interviews were conducted at participants' homes or a local venue chosen by them. The interviews were audio-recorded and transcribed verbatim. Interviews utilized the Grid Elaboration Method (Joffe & Elsey, 2014), a free association method targeted at drawing out the naturalistic thoughts and feelings of individuals, whilst minimiz- ing the influence of the interviewer's knowledge and prior assumptions. The interview consisted of two phases. The first phase was designed to elicit a more general experience of lone- liness, while the second phase intended to elicit location-specific loneliness to draw out more specific instances of experienced loneliness. In the first phase, participants were presented with a four-box grid (Appendix A) and asked to write or draw an idea they associated with ‘the experience of loneliness’ in each of the four boxes. Participants were then prompted by the interviewer to elaborate on each box, focusing on one box before moving on to the next. This began with ‘can we talk about what you have put in box 1, please?’ Following this, the interviewer made use of open-ended prompts (e.g., ‘can you tell me more about that?’, ‘how does that make you feel?’) to encourage further elaboration from the participant, taking care to avoid interviewer interference. The flow of the interviews was guided primarily by the interviewee. In the second phase of the interview, participants were presented with a two-box grid (Appendix B) and instructed to write or draw in one a place they felt most socially connected, and in the other, a place they felt loneliest. The partic- ipants were encouraged to elaborate on their responses in a similar manner as in the first interview phase. Following the completion of the interview, demographic data were collected from each participant. 2.3 | Qualitative analysis The transcribed interview data were analysed using ATLAS.ti 9, which facilitated the creation of codes and themes using thematic analysis (Braun & Clarke, 2006). Thematic analysis entails a systematic process of identifying recurring themes across participants. The data is coded by attaching codes to relevant phrases. These codes are grouped into overarching themes. Each theme is well-substantiated by excerpts from the data and described in detail (Strauss & Corbin, 1998). Through this process, inductive codes by the researchers were used to form a coding frame. In accordance with good practice guidelines (Barker & Pistrang, 2005), the coding frame was checked for interrater reliability by an inde- pendent coder in approximately 10% (n = 5) of the interviews. A reliability score of 67.2% was calculated between the researchers and deemed acceptable (O'Connor & Joffe, 2020). Following the resolution of inconsistencies between the researchers, the interviews were coded with reference to the final coding frame. 2.1 | Participants Since the ONS (2018) survey found area deprivation to correlate with loneliness in young people, this study rec- ruited 48 participants (24 males, 24 females) living in the four most deprived boroughs in London: Tower Hamlets, Barking and Dagenham, Newham and Hackney. The ages of participants ranged from 18 to 24 years; participants under 18 were not sampled for ethical reasons. At least five participants of each gender were recruited from each 3 | RESULTS Of the 48 interviewees, 34 (70.8%) referenced rumination. Thematic analysis of the data from these 34 interviewees generated 16 codes, regarding how young people subjectively experienced rumination in the context of loneliness. The codes were organized into five themes; ‘rumination related to others’, ‘temporal experience of rumination’, ‘ruminating life and death’, ‘outcomes of rumination’ and ‘coping with loneliness-related rumination’. The percent- age frequency of their occurrence among interviewees who referenced rumination is summarized in Figure 1. 6 YUN ET AL. 6 Themes Percentage Frequency Ruminaon related to others 64.7% Temporal experience of ruminaon 47.1% Ruminang life and death 14.7% Outcomes of ruminaon 64.7% Coping with loneliness-related ruminaon 52.9% FIGURE 1 Table of percentage frequency of themes FIGURE 2 Thematic map of themes and codes arising in interviews Themes Percentage Frequency Ruminaon related to others 64.7% Temporal experience of ruminaon 47.1% Ruminang life and death 14.7% Outcomes of ruminaon 64.7% Coping with loneliness-related ruminaon 52.9% FIGURE 1 T bl f t f f th FIGURE 1 Table of percentage frequency of themes FIGURE 1 Table of percentage frequency of themes FIGURE 2 Thematic map of themes and codes arising in interviews FIGURE 2 Thematic map of themes and codes arising in interviews FIGURE 2 Thematic map of themes and codes arising in interviews The theme ‘rumination related to others’ described rumination related to other people, followed by ‘temporal experience of rumination’, which explored the temporal nature of rumination. The theme ‘ruminating life and death’ provided insight into existential rumination and rumination regarding death. Finally, the themes ‘outcomes of rumi- nation’ and ‘coping with loneliness-related rumination’ described the impacts of rumination and how individuals coped with rumination. These themes and their codes are summarized in Figure 2. The data were also analysed for possible differences between age subgroups, genders and ethnic groups. No large differences were found between any of these groups. In the following sections, how the codes constitute the theme will be illustrated using network maps, where more prevalent codes are depicted higher relative to the other codes. 3.1 | Theme 1: Rumination related to others A key theme was ‘Rumination Related to Others’; this included ruminating on one's relationships and social interac- tions, both of which often led to ‘why me’ thoughts where interviewees looked introspectively to find reasons for why their social interactions may have played out a certain way or the state of their relationships. The lack of others YUN ET AL. FIGURE 3 Network map of ‘rumination related to others’ theme FIGURE 3 Network map of ‘rumination related to others’ theme to confide in was also closely linked to paranoid or irrational thoughts, as interviewees discussed how being unable to share their thoughts allowed their ruminative thoughts to run rampant. The network map of the theme is illus- trated in Figure 3. to confide in was also closely linked to paranoid or irrational thoughts, as interviewees discussed how being unable to share their thoughts allowed their ruminative thoughts to run rampant. The network map of the theme is illus- trated in Figure 3. When interviewees experienced loneliness, they tended to reflect and ruminate on their support systems and relationships with others around them, particularly, about who they could call on in times of need. …thinking man, just thinking about myself, whatever I've done in my life, who is the friend in my life to guide me, where is the family that I need to support me… (Male, 23, Newham1) Upon ruminating, if individuals felt lacking in their support systems or close friends and relationships, they tended to introspectively ruminate on possible causes. This included whether it was due to their inability to make friends, or whether they had done something to offend others around them. These thoughts, referenced as ‘Why Me' Thoughts’, were highly introspective and self-focused. Interviewees often searched for causes in their own behaviour and actions, rather than looking externally at the intentions and behaviours of others, or environmental factors. I think you end up either asking yourself (a) am I not treating people correctly? Is that why I'm not being treated with the same support that I want to be treated with. (Male, 24, Newham) Similar to ruminating relationships, when individuals had negative social experiences that made them feel lonely, they often ruminated about these experiences and the possible reasons for them playing out in a particular way. As in the case of ruminating relationships, ruminating about one's social interactions also tended to be highly introspective. 8 YUN ET AL. YUN ET AL. 8 …reflecting whilst being lonely can cause you to positively understand people's intentions because with me, I feel, when I, when I feel lonely, I feel like it's the other person not wanting to, to interact with me, but then after reflecting and then becoming a bit more positive, you can find alternative views into why the person acts a way towards you. (Male, 18, Hackney) In contrast, a number of interviewees also revealed that when they felt lonely and did not have other people to share their thoughts with, their ruminative thoughts ran rampant. With no one to “reign in” their thoughts, they felt that their minds conjured up irrational thoughts, often making a situation they were facing appear more daunting than it was. …[when you're lonely] you have irrational thoughts because there's no one there to, to sort of tell you that ‘that's not right’, like I guess the longer it goes on for, the longer you're alone, then the deeper you are sort of thing in like your own mind so you probably start thinking things that aren't true. (Female, 19, Newham) 3.1 | Theme 1: Rumination related to others Like being left out in other like other cases, you would question yourself. Like what doesn't anyon like me? Sort of questions you would ask yourself (Female 18 Hackney) Like being left out in other like other cases, you would question yourself. Like what doesn't anyone like me? Sort of questions you would ask yourself. (Female, 18, Hackney) There were, however, interviewees who reported that ruminating about negative social interactions allowed them to positively reframe an experience. Instead of reflecting introspectively on what they might have done wrong, rumination allowed them to take on a broader perspective. This facilitated reflection and consideration of other pos- sible reasons for the way a social interaction played out, such as the intentions others may have had in those situations. 8 9 In contrast to ruminating on the past, thoughts that occurred when ruminating on the present during experi- ences of loneliness tended to be focused on one's life at present. This could be in terms of one's relationships, daily activities, one's feelings and strikingly, one's present loneliness and the possible causes of it. ‘Why am I, why am I here?’, ‘Why am I not with friends or something like that? (Male, 18, Hackney) Intriguingly, ruminating on the present appeared closely related to the past, with ruminative thoughts often aris- ing from a comparison of one's present circumstances with the past in some manner. As the interviewee quoted below described, such ruminative thoughts can be maladaptive, leading individuals to feel a sense of failure that they have not progressed as they had expected to. …it could be where you are in life, it could be, like, you know what, I expected more, could be reflecting back two years ago where you was and where you are now, and feeling like ‘wow, it's kind of fail, I fell off and you know, getting emotional, tears come out… (Male, 24, Barking and Dagenham) The final facet of the temporal experience of rumination centres around the future. In contrast to ruminative thoughts on the past and present, which appear mostly negative, there are both positive and negative ruminative thoughts on the future. A number of interviewees recognized how ruminating about the future while feeling lonely allowed them to focus on how they were going to approach the future and construct plans. This appears to be a more adaptive form of rumination allowing individuals to think constructively about their future. … it allows you to just think and generate certain ways of how you're gonna sort things out, how you're gonna work towards better things and how you're gonna strategize to kinda move forward. (Male, 23, Newham) In contrast, some interviewees expressed that ruminating about the future had a negative side. The uncertaint one felt towards the future could lead to further rumination and consequently, worry about what the future held. I worry a lot, of like what the future holds and what things are gonna be like, like, are my fam actually gonna be okay, like… just constantly worrying about family and… is my health okay, like am I gonna go down the career path that I want to… (Female, 18, Barking and Dagenham) | Theme 2: Temporal experience of rumination 3.2 Another recurring theme was the temporal nature of rumination. The ruminative thoughts reported by interviewees often involved a temporal element. This included ruminating on the past, the present, or the future (Figure 4). When they experienced loneliness or were physically alone, interviewees expressed a tendency to ruminate about how events that took place in the past could have played out differently, the actions they could have taken at the moment or how their own actions could have affected others There was a particular focus on things that went Another recurring theme was the temporal nature of rumination. The ruminative thoughts reported by interviewees often involved a temporal element. This included ruminating on the past, the present, or the future (Figure 4). When they experienced loneliness or were physically alone, interviewees expressed a tendency to ruminate about how events that took place in the past could have played out differently, the actions they could have taken at the moment, or how their own actions could have affected others. There was a particular focus on things that went wrong or what they might have done wrong, which was associated with feelings of worry and sadness. This was most common in the context of social interactions, as described in the prior theme. Another recurring theme was the temporal nature of rumination. The ruminative thoughts reported by interviewees often involved a temporal element. This included ruminating on the past, the present, or the future (Figure 4). I play scenarios over in my head over and over and over again of how I could have possibly done it or if I am having a disagreement on opinions, I would sit up all night and have gone like, I could have said that or they could have said that more politely, and it's just, it's just a play over of how I could do things differently… (Female, 20, Barking and Dagenham) While most participants focused on things they might have done wrong or things that did not turn out as expected, some described having reflected positively on the past such as reminiscing about the positive aspects of their lives thus far. FIGURE 4 Network map of ‘temporal experience of rumination’ theme FIGURE 4 Network map of ‘temporal experience of rumination’ theme YUN ET AL. YUN ET AL. | Theme 3: Ruminating life and death Another theme that emerged was rumination centred on life and death (Figure 5). When individuals felt lonely, some engaged in rumination about death, mainly of loved ones, particularly, what would happen in the future following their passing. Such thoughts tended to be emotionally distressing and inter- viewees discussed how they often worried about their future following the hypothetical loss of loved ones. This appeared to be exacerbated in those who felt they lacked a strong support system. So like the other night, I was thinking of like my mum and thinking about my future and will she still be here and… and just getting myself worked up, and I worry like a lot. I worry a lot a lot. (Female, 18, Barking and Dagenham) In contrast to thoughts about death, a number of interviewees expressed that they ruminated about life and existence when they were alone. This included thoughts on the meaning of one's life, and the concept of life in a 0 YUN ET AL. 10 FIGURE 5 Network map of ‘life and death’ theme FIGURE 6 Network map of ‘outcomes of rumination’ theme FIGURE 5 Network map of ‘life and death’ theme FIGURE 6 Network map of ‘outcomes of rumination’ theme ‘grander’ sense. Interestingly, many highlighted that they had such thoughts when they were surrounded by nature, such as in parks. Existential thoughts tended to exacerbate feelings of loneliness as individuals reflected on the meaning of their lives and existence at the scale of the seemingly vast world around them. … [in parks] you can reflect on life and on a different way… on its beauty, this nat-, um there's natural- istic element more than social, so then you start reflecting on its beauty and then you start thinking and wondering, or I start thinking and wondering what has, like what was life and what has it become, so then that kind of reflection of a deeper meaning, sometimes you can turn to being, feeling, feeling lonely, just, just because you're in a state of mind where you're just really thinking about life… (Male, 18, Hackney) 3.4 | Theme 4: Outcomes of rumination 3.4 Another facet of the subjective experience of rumination involved the outcomes of rumination (Figure 6). Interviewees reported that the intrusive nature of their ruminative thoughts tended to keep them up at night, affecting the amount of sleep they got. Cause then it stops me from like sleeping a lot as well. Feel like I'm overthinking into the night. There's not like a switch off button… (Female, 22, Newham) 11 from rumination, particularly impaired sleep, was closely tied to mental ill-being. Interviewees described how rumi- nating late into the night exacerbated feelings of worry, depression and other negative emotions. These feelings also arose from rumination in many interviewees independent from physical ill-being. from rumination, particularly impaired sleep, was closely tied to mental ill-being. Interviewees described how rumi- nating late into the night exacerbated feelings of worry, depression and other negative emotions. These feelings also arose from rumination in many interviewees independent from physical ill-being. Like, that was my constant thought and I'd be like up in the middle of the night crying and stuff… (Male, 18, Barking and Dagenham) Like, that was my constant thought and I'd be like up in the middle of the night crying and stuff Like, that was my constant thought and I'd be like up in the middle of the night crying and stuff… (Male 18 Barking and Dagenham) Another prevalent idea that interviewees raised was how rumination during experiences of loneliness could exacerbate their loneliness. In particular, interviewees described how ruminating made them feel consumed and alone with their thoughts, which led to them feeling lonelier. Some also reported feeling like they could not confide in others about their ruminative thoughts for fear of burdening them. This led to them feeling alone in working through their thoughts, which, in turn, exacerbated their loneliness. So, it gets lonely in the sense that you, yourself have to sit there and like get through them… Yeah, because it is a handful and that sort of goes back to the burden thing because it's like… I can't offload lots onto one person, because now that person has all of my thoughts or over-thoughts. (Female, 24, Hackney) Finally, a few interviewees also mentioned how rumination led to a circular loop where they ruminated further about their own ruminative thoughts, leading to self-doubt, loneliness and irrational thoughts. Cause then it stops me from like sleeping a lot as well. Feel like I'm overthinking into the night. There's not like a switch off button… (Female, 22, Newham) In addition to affecting sleep, some interviewees also discussed how they turned to maladaptive eating habits (e.g., comfort eating, not eating at all) to cope with their ruminative thoughts. Interestingly, physical ill-being arising 11 YUN ET AL. 12 12 YUN ET AL. 12 YUN ET AL. Another coping strategy interviewees adopted in response to rumination when they were lonely was positive reframing. When faced with negative thoughts resulting from rumination, some described how they reframed the sit- uation more positively, reflecting on the good in their lives and their thoughts in a more positive and objective man- ner. This prevented them from being consumed by negative thoughts and helped them to think constructively about how they could ease their loneliness or distract themselves from ruminating. Yeah, so why I said positive is like, if I link in a positive way like… you know, my family's there for me, if anything happens, you know, I can share with them and tell them, and in my family I have cousins and other people around me who can help me through it, so yeah. I can discuss it with them. (Female, 19, Tower Hamlets) Finally, a small number of interviewees expressed how being in nature provided a peaceful environment away from others and any worries or negative rumination; this encouraged them to think constructively, notably about their future, allowing them to strategize and make plans, and reflect positively about themselves. …sometimes for example I am feeling a bit upset about something, I would just walk it out [at the park]. I would literally just go for a walk and you are doing something, it's a quiet place and you are kind of just giving yourself time to think to yourself. (Female, 22, Tower Hamlets) However, while being alone in nature promoted adaptive forms of rumination and provided respite from nega- tive thoughts, some recognized that physical isolation from others could also lead one to focus on loneliness or rumi- nate existentially, which could exacerbate loneliness. 3.5 | Theme 5: Coping with loneliness-related rumination The final theme describes the coping mechanisms adopted by young people in relation to their rumination (Figure 7). The most common strategy interviewees tended to employ was the use of distraction. Interviewees shared how distracting themselves with a company, work, school or activities occupied their minds, keeping them from ruminat- ing negatively. Interviewees also acknowledged that the lack of distraction could lead one to ruminate more, exacer- bating feelings of loneliness. … when you're around people you won't have time to sit down and think do you get what I'm trying to say to you so that's why I said that and at uni I'm always around people, at work, I'm constantly around people as well and always around friends. (Female, 24, Barking and Dagenham) FIGURE 7 Network map of ‘coping with loneliness-related rumination’ theme FIGURE 7 Network map of ‘coping with loneliness-related rumination’ theme YUN ET AL. 13 give rise to feelings of inadequacy. This may have been more prevalent within the sample due to the age of the inter- viewees. Cross-cultural research has found that people begin to feel more aware of others and their reactions in social situations in late adolescence to early adulthood (Essau, Sasagawa, Chen, & Sakano, 2010; Takahashi, 1989). This may have contributed towards the observed pattern of self-focused social rumination. Conversely, some inter- viewees reported that negative social rumination prompted them to take a broader, more objective perspective in thinking about their social interactions, contradicting Clark and Well's model. This could reflect adaptive coping in the form of cognitive reappraisal in response to negative social rumination. This highlights a need for a theoretical extension of the model to encompass possible coping mechanisms that individuals employ in social rumination. In addition, this social facet of rumination maps onto Weiss' (1973) typology of emotional and social loneliness. In Weiss' typology, emotional loneliness is proposed to arise from one feeling lacking in emotional attachment and close ties with others, and this appears to align with reported instances where individuals ruminated about their social networks and close relationships when they experience loneliness. Social loneliness, on the other hand, is the- orized to result from feeling a lack of social integration, and this is reflected when people ruminated about past inter- actions that went awry and made them feel out of place and isolated in social settings. The findings support Weiss' typology of emotional and social loneliness and also appear to suggest that different sub-types of loneliness could potentially contribute to different contents in ruminative thoughts. The next novel finding was captured by the theme ‘temporal experience of rumination’. Ruminating the past was strongly related to thinking about past social interactions that had gone awry. In contrast, ruminating on the pre- sent appeared to be focused on where one is in life, one's feelings and, most strikingly, one's present loneliness and the circumstances surrounding it. This observation supports Conway, Csank, Holm, and Blake's (2000) construct, which conceptualizes rumination as repetitively thinking about present distress, and its circumstances. Interestingly, there was a recurring association between ruminating on the past and present in the sample. Spe- cifically, interviewees often ruminated on their present in relation to the past. When they felt they did not meet the goals they had set in the past, interviewees expressed a sense of failure. This echoes Martin, Tesser, and McIntosh's (1993) goal progress model of rumination, which proposes rumination arises from a failure to progress towards important goals, and that information related to important unattained goals remains active in memory longer than attained goals. In line with this, interviewees appeared to ruminate more on goal discrepancies between the past and the present, with no mention of ruminating about attained goals. The greater the discrepancy, the more interviewees appeared to ruminate on it. However, the model also assumes that rumination terminates when individuals attain the goal, make satisfactory progress, or give it up. However, even when interviewees had given up on their past goals, they still ruminated about them, contributing to a sense of failure. This highlights the need for revision of the model to account for instances when rumination of a goal may persist despite an individual having given it up. Lastly, while this study found evidence for a pattern of negative, brooding rumination regarding the future, a key feature in many theories of rumination (Michl, McLaughlin, Shepherd, & Nolen-Hoeksema, 2013), a considerable number of interviewees reported ruminating positively about the future, thinking constructively and strategizing about their future. Positive rumination about the future does not appear to have been studied extensively in the existing literature, yet it appears crucial in moderating the effect of rumination on mental wellbeing. Research has found those who ruminate more hopeful about their future suffer less adverse effects on their mental well-being as a result of rumination (Sun, Tan, Fan, & Tsui, 2014). In conclusion, it appears that the experience of rumination during loneliness in young adults involves a temporal element and while the observations may be largely in line with the cur- rent literature, there is a need to review current theories to account for findings that are not explained by existing models. Indeed, positive rumination needs to be incorporated into current theories. The third and final facet of the experience of rumination was captured by ‘ruminating life and death’. In this theme, interviewees expressed feeling fearful or worried when they ruminated about a future following the hypo- thetical loss of a loved one during experiences of loneliness. 4 | DISCUSSION In this study, 48 participants aged 18–24 residing in London's most deprived boroughs were interviewed on what they associated with the experience of loneliness. The aim of this analysis was to explore the subjective experience of rumination in the context of loneliness and how the two interrelated. Without prompting, 71% of the inter- viewees discussed rumination when sharing their experiences of loneliness. A thematic analysis of the interview data yielded five themes that captured these experiences: ‘rumination related to others’, ‘temporal experience of rumina- tion’, ‘ruminating life and death’, ‘outcomes of rumination’ and ‘coping with loneliness-related rumination’. In line with existing research, the prevalence of rumination in the context of loneliness corroborates quantitative studies finding loneliness to reliably predict rumination in young adults (Vanhalst et al., 2012; Zawadzki et al., 2013). Interviewees were not prompted to speak about rumination, yet the frequency of its emergence suggests it is a key component of the experience of loneliness within the sample; young people who experience loneliness appear to engage in high levels of rumination. In addition, the findings of this study highlighted a recurring association between rumination and ill-being in the context of loneliness, specifically concerning sleep and mood. Some interviewees stated that ruminating kept them up at night, exacerbating negative emotions, and having an adverse effect on wellbeing. Apart from corroborating existing research on the relationship between loneliness and rumination, the analysis also identified three previously unidentified facets of the experience of rumination in the context of loneli- ness in young adults. The first was captured by the theme ‘rumination related to others’. When they felt lonely, interviewees tended to ruminate about their social relationships and past interactions that went awry. They scrutinized their relationships and interactions with a negative, self-focused outlook. This supports Clark and Wells' (1995) social model of rumina- tion, which hypothesises that negative social situations, which can lead to feelings of loneliness, may result in brooding social incidents and relationships with a heavy focus on the past. Such brooding has also been theorized to 13 14 YUN ET AL. YUN ET AL. 14 bereavement has been proposed to be a result of a maladaptive coping strategy (Nolen-Hoeksema, McBride, & Larson, 1997). Future research will need to discern whether the anticipatory rumination of death during experienced loneliness reflects a similar coping strategy, or if it is simply a product of underlying feelings of anxiety and worry that arise in individuals during experiences of loneliness. Anticipatory rumination also appears to map onto existential loneliness, also described as existential suffering (Moustakas, 1961), which includes fear of death and being left alone (Sand & Strang, 2006). While most research into existential loneliness has concentrated on understanding the con- cept itself (Ettema, Derkensen, & Leeuwen, 2010), and tends to focus on the elderly in the context of healthcare, the fact that it was a recurring idea within the sample suggests that more research is needed to explore it, in particular, its possible functions, and how young adults experience it. In contrast to thoughts about death, some interviewees ruminated on the meaning of their existence when they felt lonely. This led some of them to feel disconnected from the world around them, exacerbating their loneliness. This has been identified in the literature as loneliness anxiety (Moustakas, 1961). Moustakas contended that such loneliness may be a product of contemporary living, where urbanization and the increasing competitiveness, self- centredness and materialism of people lead to the loss of the intimate sense of genuine connection to the world and people around them. The findings of this study indicate that both ruminating about death and the meaning of exis- tence form key facets of the experience of rumination in the context of loneliness in young adults. The remaining two themes captured the outcomes of rumination and how individuals coped with loneliness- related rumination. With respect to outcomes, interviewees found the intrusive nature of ruminative thoughts to impair their sleep, which was associated with mental ill-being, exacerbating negative emotions such as sadness, depression and worry. These feelings also arose in many interviewees independent of impaired sleep. These findings, where rumination arising from loneliness appears to be a pathway through which mental ill-being arises, are in line with existing research (Carney, Edinger, Meyer, Lindman, & Istre, 2006; Guastella & Moulds, 2007). While ruminating about death has been studied exten- sively, existing literature focuses primarily on rumination following bereavement and much less on the anticipatory rumination on death observed in the sample (Eisma et al., 2014). The role of ruminating about death following 4.1 In light of the findings, there are certain interventions that may help to tackle rumination, and consequently loneli- ness, in young people. Firstly, mindfulness meditation enables one to bring one's attention to the present moment hence freeing it from dwelling on the past or the future (Baer, 2003). Mindfulness has also been found to help people to develop a non-judgemental attitude towards their experiences (Kabat-Zinn, 1990). Journaling gratitude on a regular basis may also alleviate rumination by counteracting negative thought patterns and consequently diminishing anxiety, depression and loneliness (Bartlett & Arpin, 2019; Iodice, Malouff, & Schutte, 2021; Smyth et al., 2018). For example, in one study, 15 min of online positive affect journaling three times a week for 12 weeks reduced mental distress and increased wellbeing (Smyth et al., 2018). Prosocial behaviour has also been shown to help diminish rumination by improving mindful awareness and attention to the present (Meng & Meng, 2020). Focusing on helping other people in need allows one to disengage from one's own thoughts and emotions and invest one's cognitive resources elsewhere. For example, volunteering for charitable organizations may lend a sense of purpose. An interesting observation from the present study, which is not captured by the existing literature, is how ruminating when lonely can exacerbate loneliness, making individuals feel consumed by their own thoughts. This could also feed into a nega- tive feedback loop (i.e., rumination feeds into further loneliness, exacerbating mental ill-being, and so on). Addition- ally, social rumination featured heavily in the sample, and a part of such thinking involved ruminating on past social interactions (e.g., what went wrong, what could have been done better), which could feed into anxiety concerning future social interactions, or even make individuals hyper-aware of how others may perceive them in social interaction. Finally, with regard to how young adults in the sample coped with loneliness-related rumination, the most com- mon strategy was a distraction. This could include being around friends or immersing themselves in activities that demanded their attention and focus. They reported that distractions kept their mind occupied, preventing them from ruminating and experiencing loneliness. This supports evidence that those who tend to distract themselves as opposed to ruminating observe decreases in depression and anxiety over time (Roelofs et al., 2009). However, dis- traction may not be a long-term solution, as participants also shared that once they were alone and away from dis- tractions, they tended to find themselves ruminating and feeling lonely again. In contrast, another common coping strategy, positive reframing of situations, may work better. More research is needed to explore whether this strategy works. It if does, it may be a more long-term solution to ruminative thinking that exacerbates loneliness than distrac- tions. The final coping strategy that individuals employed was seeking out nature. Some interviewees reported that nature provided respite from ruminating, corroborating existing research on green spaces and rumination (Bratman, Hamilton, Hahn, Daily, & Gross, 2015). However, a small number of interviewees expressed how being in nature prompted existential rumination on life, which made them feel lonelier. This suggests that the effect that green spaces have on rumination could be far more complex than the literature suggests; it could potentially play a dichot- omous role in both facilitating and reducing rumination. Further research will be needed to study the contexts in which facilitation versus reduction prevails. While the findings of this study corroborate existing literature, they also highlight many aspects of rumination that have not been previously explored. For instance, some young people in this study reported ruminating about YUN ET AL. 15 unattained goals despite having given them up, ruminating positively about the future, or ruminating in an anticipa- tory manner about the death of loved ones. Some interviewees in the sample also ruminated existentially, a phenom- enon typically observed in older populations. The study also highlights the dichotomous role played by green space in rumination. The aforementioned findings are not currently accounted for by current models and merit further research. Additionally, the findings of the present study paint a more holistic account of rumination in the context of loneliness, integrating various theories of rumination. unattained goals despite having given them up, ruminating positively about the future, or ruminating in an anticipa- tory manner about the death of loved ones. Some interviewees in the sample also ruminated existentially, a phenom- enon typically observed in older populations. The study also highlights the dichotomous role played by green space in rumination. The aforementioned findings are not currently accounted for by current models and merit further research. Additionally, the findings of the present study paint a more holistic account of rumination in the context of loneliness, integrating various theories of rumination. 4.2 | The relationship between rumination and loneliness Rumination was found to frequently arise in the context of loneliness for a large proportion (71%) of the sample. This supports the findings from quantitative literature in viewing loneliness as giving rise to rumination. Additionally, this study also supports existing literature in that rumination mediated the effect of loneliness on mental and physical ill- being. However, a novel finding from this study was how there might be a bidirectional or even circular relationship between the two. Participants mentioned a circular negative feedback loop, where they reported how loneliness led to rumination, and how ruminating made them feel lonelier, having an adverse impact on their mental wellbeing. The findings also indicated how different types of ruminative thoughts mapped onto different forms of loneliness (e.g., social, emotional and existential), which could suggest that the content of ruminative thoughts may be context- specific, depending on the type of loneliness an individual experiences. 4.1 | Practical implications 4.1 FUNDING INFORMATION This study was supported by funding from the UCL Grand Challenges Environment and Wellbeing initiative (No. 156425). Implications and directions for research Despite the aforementioned limitations, this study contributes to the growing literature exploring loneliness in young adults, specifically the phenomenon of rumination, which appears to be a key component of loneliness. Further research could explore the identified facets of rumination to construct a comprehensive model of rumination in the context of loneliness, particularly in young adults. The facets of rumination could also form a base to design quantita- tive scales assessing ruminative thinking, that could predict loneliness in young adults. With the construction of such quantitative measures, we could further explore and quantify the extent to which different contexts, such as social isolation, may impact rumination in the context of loneliness. YUN ET AL. YUN ET AL. 16 this could arise, in part, from impeded social interactions that result from residing in deprived boroughs. In contrast, we may expect less social rumination, or variations in the content of social rumination, in individuals from less deprived areas. In light of this, care must be taken when interpreting these findings, as the experience of loneliness in young adults may vary with levels of area deprivation (Manstead, 2018). While the sample may not represent the general population, it is a good starting point for studying loneliness in young people, especially in those who are most vulnerable. In addition, as the interviewees were interviewed on their experiences of loneliness, the spontaneous experiences with rumination shared may have been negatively biased as loneliness tends to be associated with negative thoughts (Abeyta, Routledge, & Kaslon, 2020). The nature of how the interviews were conducted may not have captured the full occurrence of more positive forms of rumination that could help young adults cope with negative emotions and thoughts during loneliness. Future research could focus on interviewing young adults specifically on rumination, without the context of loneliness, to explore this facet of rumination in greater detail. DATA AVAILABILITY STATEMENT The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions. ORCID Rumi Chloe Yun https://orcid.org/0000-0002-3479-6591 CONFLICT OF INTEREST The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. ETHICS STATEMENT The studies involving human participants were reviewed and approved by UCL Research Ethics Committee (CEHP/2013/500). Participants provided their written informed consent to participate in this study. 4.3 | Limitations While the findings of this study provide an in-depth exploration of young adults' experience of rumination in the context of loneliness, they must be considered in light of a number of methodological issues. Firstly, the interviewees consisted of young adults from the most deprived boroughs of London, as the ONS (2018) survey found that loneliness in young people correlated with area deprivation. In this study, while participants did not explicitly focus on area deprivation, literature has cited it as a potential impediment to social interactions in neighbourhoods (e.g., poorer quality and access to neighbourhood amenities, feeling unsafe due to crime, less neighbourly trust) and a contributor to area-based loneliness (Victor & Pokhartova, 2020). Participants in this study reported high levels of social rumination, most notably, about their social and support networks or the lack thereof; 17 YUN ET AL. 17 REFERENCES Abeyta, A. A., Routledge, C., & Kaslon, S. (2020). Combating loneliness with nostalgia: Nostalgic feelings attenuate negative thoughts and motivations associated with loneliness. Frontiers in Psychology, 11, 1219. Alloy, L. B., Abramson, L. Y., Hogan, M. E., Whitehouse, W. G., Rose, D. T., Robinson, M. S., … Lapkin, J. B. (2000). The Temple-Wisconsin cognitive vulnerability to depression project: Lifetime history of axis I psychopathology in individuals at high and low cognitive risk for depression. Journal of Abnormal Psychology, 109(3), 403–418. Andersson, L. (2010). Loneliness research and interventions: A review of the literature. Aging & Mental Health, 2(4), 264–274. Baer, R. A. (2003). Mindfulness training as a clinical intervention: A conceptual and empirical review. Clinical Psychology: Sci- ence and Practice, 10(2), 125. Barker, C., & Pistrang, N. (2005). Quality criteria under methodological pluralism: Implications for conducting and evaluating research. American Journal of Community Psychology, 35(3/4), 201–212. Barreto, M., Victor, C., Hammond, C., Eccles, A., Richins, M. T., & Qualter, P. (2020). Loneliness around the world: Age, gen- der, and cultural differences in loneliness. Personality and Individual Differences, 169, 110066. Arpin, S. N. (2019). Gratitude and loneliness: Enhancing health and well-being in older adults. Research on 772–793. Bartlett, M. Y., & Arpin, S. N. (2019). Gratitude and loneliness: Enhancing health and well-being in older ad Aging, 41(8), 772–793. Bratman, G. N., Hamilton, J. P., Hahn, K. S., Daily, G. C., & Gross, J. J. (2015). Nature experience reduces rumination and sub- genual prefrontal cortex activation. Proceedings of the National Academy of Sciences-PNAS, 112(28), 8567–8572. Braun, V., & Clarke, V. (2006). Using thematic analysis in psychology. Qualitative Research in Psychology, 3(2 Braun, V., & Clarke, V. (2006). Using thematic analysis in psychology. Qualitative Research in Psychology, 3(2), 77–101. Cacioppo, J. T., Cacioppo, S., & Boomsma, D. I. (2013). Evolutionary mechanisms for loneliness. Cognition and Emotion, 28(1), 3–21. Cacioppo, J. T., & Cacioppo, S. (2018). The growing problem of loneliness. The Lancet, 391(10119), 426. Carney, C. E., Edinger, J. D., Meyer, B., Lindman, L., & Istre, T. (2006). Symptom-focused rumination and sleep disturbance. Behavioral Sleep Medicine, 4(4), 228–241. Ciesla, J. A., & Roberts, J. E. (2002). Self-directed thought and response to treatment for depression: A preliminary investiga- tion. Journal of Cognitive Psychotherapy, 16, 435–453. rk, D. M., & Wells, A. (1995). A cognitive model. Social Phobia: Diagnosis, Assessment, and Treatment, 69, 102 Conway, M., Csank, P. A. R., Holm, S. L., & Blake, C. ENDNOTE 1 Each quote is followed by the gender, age and borough the interviewee resides in. 18 YUN ET AL. YUN ET AL. 18 Hunt, M. G., Marx, R., Lipson, C., & Young, J. (2018). No more FOMO: Limiting social media decreases loneliness and depres- sion. Journal of Social and Clinical Psychology, 37(10), 751–768. Iodice, J. A., Malouff, J. M., & Schutte, N. S. (2021). The association between gratitude and depression: A meta-analysis. International Journal of Depression and Anxiety, 4, 24. Joffe, H., & Elsey, J. W. B. (2014). Free association in psychology and the grid elaboration method. Review of General Psychol- ogy, 18(3), 173–185. Kabat-Zinn, J. (1990). Full catastrophe living: Using the wisdom of your body and mind to face stress, pain and illness. New York, NY: Delacorte. King, M. (2018). Working to address the loneliness epidemic: Perspective-talking, presence, and self-disclosure. American Journal of Health Promotion, 32(5), 1315–1317. Lauder, W., Mummery, K., Jones, M., & Caperchione, C. (2006). A comparison of health behaviours in lonely and non-lonely populations. Psychology, Health & Medicine, 11(2), 233–245. Lee, C. S., & Goldstein, S. E. (2015). Loneliness, stress, and social support in young adulthood: Does the s matter? Journal of Youth and Adolescence, 45(3), 568–580. MacDonald, K. J., Willemsen, G., Boomsma, D. I., & Schermer, J. A. (2020). Predicting loneliness from where and what people do. Social Sciences, 9(4), 51. Manstead, A. S. (2018). The psychology of social class: How socioeconomic status impacts thought, feelings, and behaviour. British Journal of Social Psychology, 57(2), 267–291. Martin, L. L., Tesser, A., & McIntosh, W. D. (1993). Wanting but not having: The effects of unattained goals on thoughts and feelings (pp. 552–572) Century psychology series: Handbook of mental control. Hoboken, NJ: Prentice Hall Inc. Martin, L. L., Tesser, A., & McIntosh, W. D. (1993). Wanting but not having: The effects of unattained goals on thoughts and Matthews, G., & Wells, A. (2004). Rumination, depression, and metacognition: The S-REF model. In Nature, theory and treat- ment: Depressive rumination (pp. 125–151). Chichester, UK: John Wiley & Sons, Ltd. Matthews, T., Danese, A., Caspi, A., Fisher, H. L., Goldman-Mellor, S., Kepa, A., … Arseneault, L. (2019). Lonely young adults in modern Britain: Findings from an epidemiological cohort study. Psychological Medicine, 49(2), 268–277. Meng, Y., & Meng, G. (2020). Prosocial behavior can moderate the relationship between rumination and mindfulness. Fron- tiers Psychiatry, 11, 289. Michl, L. C., McLaughlin, K. A., Shepherd, K., & Nolen-Hoeksema, S. (2013). Rumination as a mechanism linking stressful life events to symptoms of depression and anxiety. Journal of Abnormal Psychology, 122(2), 339–352. Moustakas, C. E. (1961). Loneliness. Englewood Cliffs, NJ: Prentice Hall. (1961). Loneliness. Englewood Cliffs, NJ: Prentice Hall Nolan, S. A., Robert, J. E., & Gotlib, L. H. (1998). Neuroticism and ruminative response style as predictors of change in depressive symptomatology. Cognitive Therapy and Research, 22, 445–455. Nolen-Hoeksema, S., McBride, A., & Larson, J. (1997). Rumination and psychological distress among bereaved partners. Jour- nal of Personality and Social Psychology, 72(4), 855–862. Nolen-Hoeksema, S., Wisco, B. E., & Lyubomirsky, S. (2008). Rethinking rumination. Perspectives on Psychological Science, 3(5), 400–424. O'Connor, C., & Joffe, H. (2020). Intercoder reliability in qualitative research: Debates and practical guidelines. International Journal of Qualitative Methods, 19, 160940691989922. Office for National Statistics. (2018). Loneliness–what characteristics and circumstances are associated with feeling lonely? Newport, Wales: Office for National Statistics. Newport, Wales: Office for National Statistics. Pinquart, M., & Sorensen, S. (2003). Risk factors for loneliness in adulthood and old age—A meta-analysis. Advances in Psy- chology Research, 19, 111–143. rt, M., & Sorensen, S. (2010). Influences on loneliness in older adults: A meta-analysis. Basic and Applied Socia y, 23(4), 245–266. Pinquart, M., & Sorensen, S. (2010). Influences on loneliness in older adults: A meta-analysis. Basic and Applied Social Psychol- ogy, 23(4), 245–266. Ri h N E & S k l R L (1992) Th i f l bj t t ti d ti i b Sokolove, R. L. (1992). The experience of aloneness, object representation, and evocative memory in bor- eurotic patients. Psychoanalytic Psychology, 9(1), 77–91. Richman, N. E., & Sokolove, R. L. (1992). The experience of aloneness, object representation, and evocative derline and neurotic patients. Psychoanalytic Psychology, 9(1), 77–91. Rico-Uribe, L. A., Caballero, F. F., Martin-Maria, N., Cabello, M., Ayuso-Mateos, J. L., & Miret, M. (2018). Association of lone- liness with all-cause mortality. A Meta-Analysis. PloS One, 13(1), e0190033. Roelofs, J., Rood, L., Meesters, C. M. G., Te Dorsthorst, V., Bögels, S. M., Alloy, L. B., & Nolen-Hoeksema, S. (2009). The influ- ence of rumination and distraction on depressed and anxious mood: A prospective examination of the response styles theory in children and adolescents. European Child & Adolescent Psychiatry, 18(10), 635–642. Rose, A. J. (2002). Co–rumination in the friendships of girls and boys. Child Development, 73(6), 1830–1843 Sand, L., & Strang, P. (2006). REFERENCES K. (2000). On assessing individual differences in rumination on sadness. Journal of Personality Assessment, 75, 404–425. Crosnoe, R. (2000). Friendships in childhood and adolescence: The life course and new directions. Social Psychology Quar- terly, 63(4), 377–391. De Niro, D. A. (1995). Perceived alienation in individuals with Type II schizophrenia. Issues in Mental Health Nursing, 16(3), 185–200. Eisma, M. C., Schut, H. A., Stroebe, M. S., van den Bout, J., Stroebe, W., & Boelen, P. A. (2014). Is rumination after bereave- ment linked with loss avoidance? Evidence from eye-tracking. PLoS One, 9(8)), E104980. Essau, C. A., Sasagawa, S., Chen, J., & Sakano, Y. (2010). Taijin kyofusho and social phobia symptoms in young adults in England and in Japan. Journal of Cross-Cultural Psychology, 43(2), 219–232. Ettema, E. J., Derkensen, L. D., & Leeuwen, E. V. (2010). Existential loneliness and end-of-life care: A systematic review. The- oretical Medicine and Bio-Ethics, 31(2), 141–169. Fardghassemi, S., & Joffe, H. (2021). Young adults' experience of loneliness in London's most deprived areas. Frontiers in Psy- chology, 12, 660791. Flett, G. L., Madorsky, D., Hewitt, P. L., & Heisel, M. J. (2002). Perfectionism cognitions, rumination, and psychological dis- tress. Journal of Rational-Emotive and Cognitive Behavior Therapy, 20, 33–47. Gan, P., Xie, Y., Duan, W., Deng, Q., & Yu, X. (2015). Rumination and loneliness independently predict six-month later depression symptoms among Chinese elderly in nursing homes. PLoS One, 10(9), E0137176. Goldsmith, S. K., Pellman, T. C., Kleinman, A. M., & Bunney, W. E. (2002). Reducing suicide: A national impera DC: National Academy Press. Gow, A. J., Pattie, A., Whiteman, M. C., Whalley, L. J., & Deary, I. J. (2007). Social support and successful aging: Investigating the relationships between lifetime cognitive change and life satisfaction. Journal of Individual Differences, 28(3), 103–115. Guastella, A. J., & Moulds, M. L. (2007). The impact of rumination on sleep quality following a stressful life event. Personality and Individual Differences, 42(6), 1151–1162. Hawkley, L. C., Thisted, R. A., & Cacioppo, J. T. (2009). Loneliness predicts reduced physical activity. Health Psychology, 28(3), 354–363. Hazer, O., & Boylu, A. A. (2010). The examination of the factors affecting the feeling of loneliness of the elderly. Procedia, Social and Behavioral Sciences, 9, 2083–2089. YUN ET AL. 19 Spasojevic, J., & Alloy, L. B. (2001). Rumination as a common mechanism relating depressive risk to depression. Emotion, 1, 25–37. Speckens, A. E. M., Ehlers, A., Hackmann, A., Ruths, F. A., & Clark, D. M. (2007). Intrusive memories and rumination in patients with post-traumatic stress disorder: A phenomenological comparison. Memory, 15(3), 249–257. Strauss, A., & Corbin, J. (1998). Basics of qualitative research: Techniques and procedures for developing grounded theory (p. 2). Thousand Oaks, CA: Sage Publications, Inc. Sukhodolsky, D. G., Golub, A., & Cromwell, E. N. (2001). Development and validation of the anger rumination scale. Personal- ity and Individual Differences, 31(5), 689–700. Sun, H., Tan, Q., Fan, G., & Tsui, Q. (2014). Different effects of rumination on depression: Key role of hope. International Journal of Mental Health Systems, 8, 53. Takahashi, T. (1989). Social phobia syndrome in Japan. Comprehensive Psychiatry, 30, 45–52. Treynor, W., Gonzalez, R., & Nolen-Hoeksema, S. (2003). Rumination reconsidered: A psychometric analysis. Cognitive Ther- apy and Research, 27(3), 247–259. Umberson, D., & Montez, J. K. (2010). Social relationships and health: A flashpoint for health policy. Journal of Health and Social Behavior, 51, 54–66. Vanhalst, J., Luyckx, K., Raes, F., & Goossens, L. (2012). Loneliness and depressive symptoms: The mediating and moderating role of uncontrollable ruminative thoughts. The Journal of Psychology, 146(1–2), 259–276. Victor, C. R., & Pokhartova, J. (2020). Lonely places or lonely people? Investigating the relationship between loneliness and place of residence. BMC Public Health, 20, 778. Victor, C. R., & Yang, K. (2012). The prevalence of loneliness among adults: A case study of the United Kingdom. The Journal of Psychology, 146(1–2), 85–104. Von Soest, T., Luhmann, M., & Gerstorf, D. (2020). The development of loneliness through adolescence a hood: Its nature, correlates, and midlife outcomes. Developmental Psychology, 56(10), 1919–1934. Watkins, E. R. (2008). Constructive and unconstructive repetitive thought. Psychological Bulletin, 134(2), 163 Wei, M., Russell, D. W., & Zakalik, R. A. (2005). Adult attachment, social self-efficacy, self-disclosure, loneliness, and subse- quent depression for freshman college students. Journal of Counselling Psychology, 52(4), 602–614. Weiss, R. S. (1973). The experience of emotional and social isolation. Cambridge: MIT Press. Wheeler, L., Reis, H., & Nezlek, J. B. (1983). Loneliness, social interaction, and sex roles. Journal of Personality and Social Psy- chology, 45(4), 943–953. Yang, K., & Victor, C. (2011). Age and loneliness in 25 European nations. Ageing and Society, 31, 1–21. Zawadzki, M. How to cite this article: Yun, R. C., Fardghassemi, S., & Joffe, H. (2022). Thinking too much: How young people experience rumination in the context of loneliness. Journal of Community & Applied Social Psychology, 1–21. https://doi.org/10.1002/casp.2635 Existential loneliness in a palliative home care setting. Journal of Palliative Medicine, 9(6), 1376– 1387. Smyth, J. M., Johnson, J. A., Auer, B. J., Lehman, E., Talamo, G., & Sciamanna, C. N. (2018). Online positive affect journaling in the improvement of mental distress and well-being in general medical patients with elevated anxiety symptoms: A preliminary randomized controlled trial. JMIR Mental Health, 5(4), e11290. J., Graham, J. E., & Gerin, W. (2013). Rumination and anxiety mediate the effect of loneliness on depressed mood and sleep quality in college students. Health Psychology, 32(2), 212–222. APPENDIX B: INTERVIEW GRID EXPLORING SOCIALLY CONNECTED AND LONELY PLACES APPENDIX B: INTERVIEW GRID EXPLORING SOCIALLY CONNECTED AND LONELY PLACES YUN ET AL. 20 APPENDIX A: INTERVIEW GRID EXPLORING THE EXPERIENCE OF LONELINESS APPENDIX A: INTERVIEW GRID EXPLORING THE EXPERIENCE OF LONELINESS 21 YUN ET AL.
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How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training
Frontiers in psychology
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TYPE Brief Research Report PUBLISHED 18 December 2023 DOI 10.3389/fpsyg.2023.1112919 TYPE Brief Research Report PUBLISHED 18 December 2023 DOI 10.3389/fpsyg.2023.1112919 Julian Valentin Möhring1,2*, Méline Wölfel2,3 and Burkhard Brosig2,3 1Department of Sociology, Faculty of Social and Cultural Sciences, Distance University, Hagen, Germany, 2Department for Child and Family Psychosomatics, Faculty of Medicine, Clinic for General Pediatrics and Neonatology of the University Clinic, Giessen, Germany, 3Horst Eberhard Richter Institute for Psychoanalysis and Psychotherapy, Giessen, Germany Möhring JV, Wölfel M and Brosig B (2023) How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training. Front. Psychol. 14:1112919. doi: 10.3389/fpsyg.2023.1112919 Emerging adulthood without vocational training concerns young people from difficult social backgrounds who are often not adequately reached by therapeutic help. Difficult and traumatic experiences with therapeutic institutions are common to many of these young people in addition to a long lasting, unsatisfying patient-career. Without professional support from the therapeutic field, vocational qualification measures often cannot meet the needs of young people with inner conflicts. A counseling center for people with mental health problems was set up in 2010 as a link between professional support and a therapeutic setting. This article critically examines the importance of counseling for improving the personal situation of participants in vocational qualification measures on a descriptive level. We take a perspective on identity development and defense mechanisms in the thought of Vaillant and Erikson. Both theories focus on the social embeddedness of psychological processes. This theoretical background helps to understand young peoples’ situations and difficulties. The unique setting of the counseling center that aims to match the particular needs of these young people is presented. Thus a low-threshold, destigmatising and flexible setting should provide better access to psychosocial support for participants in vocational qualification measures. Opportunities and limits of the concept are discussed. KEYWORDS psychosocial counseling, emerging adults, vocational training, identity, defense mechanisms How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training OPEN ACCESS EDITED BY Gianluca Castelnuovo, Catholic University of the Sacred Heart, Italy REVIEWED BY MaryJo Burchard, Regent University, United States Serena Giunta, University of Palermo, Italy *CORRESPONDENCE Julian Valentin Möhring julian.moehring@fernuni-hagen.de RECEIVED 30 November 2022 ACCEPTED 27 November 2023 PUBLISHED 18 December 2023 CITATION Möhring JV, Wölfel M and Brosig B (2023) How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training. Front. Psychol. 14:1112919. doi: 10.3389/fpsyg.2023.1112919 COPYRIGHT © 2023 Möhring, Wölfel and Brosig. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. OPEN ACCESS EDITED BY Gianluca Castelnuovo, Catholic University of the Sacred Heart, Italy REVIEWED BY MaryJo Burchard, Regent University, United States Serena Giunta, University of Palermo, Italy *CORRESPONDENCE Julian Valentin Möhring julian.moehring@fernuni-hagen.de RECEIVED 30 November 2022 ACCEPTED 27 November 2023 PUBLISHED 18 December 2023 CITATION Möhring JV, Wölfel M and Brosig B (2023) How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training. Front. Psychol. 14:1112919. doi: 10.3389/fpsyg.2023.1112919 COPYRIGHT © 2023 Möhring, Wölfel and Brosig. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. OPEN ACCESS EDITED BY Gianluca Castelnuovo, Catholic University of the Sacred Heart, Italy REVIEWED BY MaryJo Burchard, Regent University, United States Serena Giunta, University of Palermo, Italy *CORRESPONDENCE Julian Valentin Möhring julian.moehring@fernuni-hagen.de RECEIVED 30 November 2022 ACCEPTED 27 November 2023 PUBLISHED 18 December 2023 CITATION Möhring JV, Wölfel M and Brosig B (2023) How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training. Front. Psychol. 14:1112919. doi: 10.3389/fpsyg.2023.1112919 COPYRIGHT © 2023 Möhring, Wölfel and Brosig. This is an open-access article distributed under the term of the Creative Commons Attribution License (CC BY). frontiersin.org OPEN ACCESS OPEN ACCESS EDITED BY Gianluca Castelnuovo, Catholic University of the Sacred Heart, Italy REVIEWED BY MaryJo Burchard, Regent University, United States Serena Giunta, University of Palermo, Italy *CORRESPONDENCE Julian Valentin Möhring julian.moehring@fernuni-hagen.de Julian Valentin Möhring1,2*, Méline Wölfel2,3 and Julian Valentin Möhring1,2*, Méline Wölfel2,3 and Burkhard Brosig2,3 Julian Valentin Möhring1,2*, Méline Wölfel2,3 and Burkhard Brosig2,3 How to reach people who do not want to be reached: psychosocial counseling for school-dropouts in vocational training The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. 1 Introduction We are not getting anywhere! This statement stood at the beginning of the project to be described here, thus gave the starting signal for considerations on how young people in their emerging adulthood (Arnett, 2004) could be supported in their personal development. The board of a vocational training institute (“Jugendwerkstatt Giessen”) reported increasingly frequent difficulties in the vocational support of these young people. The teaching of technical skills is not successful as the psychological stress of the training participants affects them. The participants are Frontiers in Psychology 01 Möhring et al. 10.3389/fpsyg.2023.1112919 an important framework for psychosocial counseling as a focal therapeutic concept. Arnett (2004) identifies emerging adulthood as a phase that begins after adolescence and the completion of puberty, independence (in many cases moving out of the parental home), and compulsory schooling, but before young adulthood. The clients of the psychosocial counseling are between 18 and 27 years of age, so they are in the stage of the emerging adulthood. However, in view of the clients’ often chronic inner conflicts, which are rooted in the earlier stages of life, the motive of inner consistency emphasized by Erikson with regard to personal development is even more important. an important framework for psychosocial counseling as a focal therapeutic concept. Arnett (2004) identifies emerging adulthood as a phase that begins after adolescence and the completion of puberty, independence (in many cases moving out of the parental home), and compulsory schooling, but before young adulthood. The clients of the psychosocial counseling are between 18 and 27 years of age, so they are in the stage of the emerging adulthood. However, in view of the clients’ often chronic inner conflicts, which are rooted in the earlier stages of life, the motive of inner consistency emphasized by Erikson with regard to personal development is even more important. considered difficult to reach, even though they seem to be in contact with the vocational training center. Many enroll in vocational training just to avoid financial sanctions from the social welfare system. This is the case for those who are dependent on social benefits but remain at home, even though they are capable of working. In summary, even those young people who are reached by a vocational training center remain difficult to reach for educational efforts, such as catching up on schooling. High levels of absenteeism, a lack of health-related self-care, and substance abuse are typical. 1.1 Concept development In the 1970s, a student movement was formed at Giessen University that combined psychoanalytic approaches with neighborhood work in a socially disadvantaged area of the city (cf. Brosig et al., 2017). Various group and individual discussions were offered and supervised by Horst Eberhard Richter, who held the Giessen Chair of Psychosomatics. The concerns of the residents of this neighborhood were discussed in a community center under psychoanalytic supervision. The residents were involved in political and social processes to improve their situation. Thus, important progress has been made on both self-efficacy and neighborhood amenities. In this tradition, the project presented in this article is based on a request from a vocational training institute to a psychosomatic department. The objective of this project is an intervention for young people in transition from school to work. Counseling began in 2010 with one psychosocial counselor and continues today with three counselors. 1 Introduction Behind all of this, a problematic relationship with the family of origin becomes apparent, or a disrupted socialization at home is reported. Psychiatric and psychotherapeutic pre- treatment is often reported as being a traumatic experience: never again. Therefore, the project aims to develop a psychotherapeutic approach that also addresses those who consciously refuse to go through with it, but latently demand it by behaving as they do. In some cases, they can thus make a new attempt and try out a therapeutic setting. p p On the other hand, the work of Vaillant (2012) on a healthy, mature defense shows that mental health, the ability to activate resources and creativity, strengthens the overall work performance in one’s own life. Defense mechanisms refer to innate involuntary regulatory processes that enable individuals to reduce cognitive dissonance and minimize sudden changes in the internal and external environment by altering perception. Defense mechanisms can distort perception of: subject, object, idea, and emotion (Vaillant, 1971). They can also affect the relationship between self and object (Vaillant, 1971). Sigmund and Anna Freud (Freud, 1937) outlined important characteristics of defense mechanisms: they are an important means of conflict and affect management and can be both adaptive and pathological. Immature defenses primarily underlie personality disorders. Skodol and Perry (1993) described the following immature defenses: devaluation, idealization, and omnipotence on a minor perception distortion level; denial, rationalization, projection on a denial level; splitting, projective identification, autistic fantasy on a major distortion level; acting out, hypochondriasis, provocative passive aggression on an action level. In a review of 50 years of research on mental defenses, Vaillant (2012) showed that failure scenarios are associated with immature defenses: development of chronic mental disorders, high burden of physical illness, increased accidents, and even premature death, often by suicide (Vaillant, 1992). This is often associated with occupational failure. The association of low adult social class with immature defensive use appeared to be a result, not a cause, of the immaturity of the defensive style (Vaillant, 1992). The relationship between defense and adult socioeconomic status was empirically demonstrated by Snarey and Vaillant (1985). The study by Plaude and Rašˇcevska (2011) supports the idea that unemployed individuals may have less mature defense mechanisms than employed individuals. Focal therapy and the biographical approach to psychosocial counseling are the subject of the next section. Frontiers in Psychology 1.2 Theoretical background Erikson (1994), in his groundbreaking work on “Identity and the Life Cycle” (1994), emphasizes the close connection between psychological development, its related conflicts, and the individual’s effectiveness in the external social world. He describes stages of identity development and presents results in the acquisition of psychosocial competencies: school graduation, sexual-partner commitment, assuming family roles, and the development of professional competencies are thus inextricably linked and shaped by psychological processing of one’s inner conflict issues. Erikson formulates a concept of the life cycle, which allows to relate present psychological difficulties to a specific phase of life, in which the problems that a client brings to a counseling session usually occur. This concept has been widely accepted, especially regarding the identity-forming phase of adolescence (Marcia, 1966), late adolescence (Blos, 1962), and the differentiation of adolescence and emerging adulthood (Arnett, 2004, Silva, 2013), and thus represents frontiersin.org 2.1 Setting The psychosocial counseling service is aimed at young people in their adolescence and emerging adulthood with problems in the transition from school to work, who are undergoing a one- year qualification measure at a training institute. The counseling concept was developed in collaboration between a clinical unit for family psychosomatics and a professor of rehabilitation pedagogy. The project adopts a conceptual approach that takes an integrated view of the three areas of vocational, psychological and health 02 frontiersin.org frontiersin.org Möhring et al. 10.3389/fpsyg.2023.1112919 10.3389/fpsyg.2023.1112919 Counselors need to point out the limitations of counseling compared to psychotherapy and define the differences with educational goals and support. promotion. When the fields of vocational pedagogy, developmental psychology and medicine are intertwined, individual support services can be initiated and provided on an interdisciplinary basis. The cornerstones of the service are voluntary participation and confidentiality about the content of the counseling sessions, immediate accessibility through multi-professional cooperation and local placement of the service (door to door), and avoidance of stigmatization through the use of a psychosocial oriented service. Participants in this program face barriers to integration into the labor market. For this reason, low thresholds are important for the counseling service. Therefor the counseling room is located inside the vocational training institute and the counselors are available immediately when a participant is willing to take advantage of the counseling service. It now becomes clear what high demands are placed on the counselors. In order to better meet them, the counseling relationships are continuously reviewed within the framework of psychoanalytically oriented case supervision. Counseling is also flanked by on-site supervision at the training institute with a psychoanalyst and all staffmembers who have contact with the client to promote multi-professional networking. In addition, counselors complete in-service therapeutic training at therapeutic institutes. On-site, long-term strategies for the care of adolescents are developed together with the specialized teachers and pedagogical staff. For a better understanding of the counseling process, the article shows two case vignettes that underline the individuality of the biographies of participants in vocational training measures. In the spirit of focal therapy (cf. Balint et al., 2013), the counseling center uses a psychoanalytic approach to help a highly stressed clientele cope emotionally and cognitively with acute personal crises and inner conflicts. In order to promote vocational and personal development, the conflicts brought by the clients are placed at the center of attention (Schnoor, 2011). 2.1 Setting The extent to which the individual’s biography and the associated problems of identity development lead to any difficulties in professional qualification is also continuously explored together. In this way, the holistic development of the client’s identity becomes the focus of psychoanalytic and social therapeutic counseling practice. Obstacles to vocational qualification are understood as expressions of a conflict dynamic. This dynamic often remains unconscious, but is latently effective and places special demands on educational work in vocational training institutions (Förster- Chanda et al., 2013; Förster-Chanda, 2020; Möhring et al., 2021). More detailled information on the focus and process of the counseling can be found in Figure 1. Internal conflicts are addressed using the basic techniques of psychoanalytic therapy, such as understanding transference and countertransference. This makes it possible to uncover conflictual relationship experiences and create complementary ones. 2.2 Process The counseling process is divided into different phases (Figure 1). First, participants in the vocational qualification measure are invited to an initial interview. There, all of them get to know the counseling offer. During this interview, an initial assessment of their psychosocial situation is made. Following the interview, they are asked to participate in an empirical study to assess their health-related quality of life (the results are presented in Schäfer et al., 2020). Following this, they receive an offer for further counseling sessions. If desired, further counseling appointments are arranged, which vary in number and intensity depending on the circumstances of the individual case. These counseling sessions focus on supporting individual clarification processes, clarifying needs, and readiness for further counseling or therapy in a clinical context. If necessary, the clients are further referred to individually tailored therapeutic services. If indicated, there is also the possibility of a quick consultation in the department for child and family psychosomatics as a cooperating center. If the clearing reveals the motivation to seek further therapeutic help, clients may stay in counseling until the start of outpatient or inpatient therapy. In the course of crisis management during counseling, the counselors do not limit themselves to the short-term expansion of individual competencies in order to promote professional development and ensure the success of the qualification measure. They also aim to increase the client’s capacity for self-reflection in the long term. The counseling process emphasizes that the causes of one’s own difficulties are not to be found in one’s own personal dynamics, but that general social factors play an equally important role. The social embedding of clients in family, peer and educational structures is of particular importance in the search for causes of individual conflict situations. Thus, psychoanalytically oriented counseling as a low-frequency crisis intervention is linked to social therapeutic forms of intervention that take into account the social embedding of personal relation problems in macrosocietal conditions (Richter, 1978). Psychosocial counseling can help shape the framework of educational institutions if the connection between individual conflicts and macrosocietal conditions is taken into account. Frontiers in Psychology frontiersin.org 2.3 Clients Due to the conceptual approach of this article, the participants are described with regard to their need of psychosocial support. A basic systematic assessment of their life situation and mental health using quantitative data can be found in Schäfer et al. (2020, 2022). However, there is no sufficient quantitative data to enable a detailed and differentiated description of these aspects. Therefore, information is used that comes from the long term experience of the counselors in the vocational training institute. Subjects of this study are young people in the phase of emerging adulthood, who are in a vocational qualification measure at the “Jugendwerkstatt Giessen” (vocational training institute). The day-to-day vocational orientation in the workshops and the qualification of young people in the life phase of emerging adulthood in the training rooms is aimed at those who find One challenge of the setting is keeping regular appointments with the counselor. This affects the relationship between client and counselor in terms of commitment and a stable framework for counseling sessions. In addition, it is necessary that counselors are clear about what personal issues can be addressed in counseling. 03 Möhring et al. 2.3 Clients 10.3389/fpsyg.2023.1112919 participation month 1 2 3 4 5 6 7 8 9 10 11 12 - clarification of the counseling setting (confidentiality, frequency of counseling sessions, voluntariness, need of orientation) - collection of information about current life situation and biography - monitoring compliance in counseling (motivation for counseling and change, absences in vocational qualification measure) - relationship building (complementary and trusting counseling relationship, experience of containment, availability and reliability) - stabilisation (reassurance through a sense of emotional support and safety in counseling) - identification of the problem focus (main conflicts in the workspace and their link to internalised relationship experiences, link to psychological and psychosomatic symptoms, reflection of the client's complex situation in case supervision among the counselors) - addressing the problem focus (reflection of the relationship dynamics and their impact on the current difficulties through mirroring and clarification; creating awareness among trainers and educators for the client’s main conflicts in supervision; if necessary referral to outpatient or inpatient psychotherapy considering the limits of counseling) - addressing further problems to promote identity development and health (if necessary referral to social or medical support services) - preparing the transition to more advanced settings of education and therapy (if necessary help with the self-assessment of work ability or referral to psychotherapy) initial interview FIGURE 1 Process of counseling. The figure shows the schematic process of counseling during participation in the vocational qualification measure over one year. Starting with the initial interview, various phases of the process are described. Ideally, all elements of the counseling process are pursued, but this is not always possible. - clarification of the counseling setting (confidentiality, frequency of counseling sessions, voluntariness, need of orientation) - clarification of the counseling setting (confidentiality, frequency of counseling sessions, voluntariness, need of orientation) - collection of information about current life situation and biography - monitoring compliance in counseling (motivation for counseling and change, absences in vocational qualification measure) - relationship building (complementary and trusting counseling relationship, experience of containment, availability and reliability) - stabilisation (reassurance through a sense of emotional support and safety in counseling) - addressing further problems to promote identity development and health (if necessary referral to social or medical support services) Process of counseling. The figure shows the schematic process of counseling during participation in the vocational qualification measure over one year. Starting with the initial interview, various phases of the process are described. Frontiers in Psychology frontiersin.org 3.1 Case vignette–Tom lasting several years). The transition from school to work is often a draining challenge, especially for young people with such a biography. As a rule, their educational careers to date have been significantly skewed. A multiple burden of sometimes existential problems is even a condition for participation in the measure. The counselors encounter a wide variety of problems with their clients: neglect, poverty, addiction, school failure, unsecured and/or obstructive housing, early parenthood, psychological and physical suffering, debt and crime. Tom (18) shows a self-confident appearance and has a muscular body. He is humorous and friendly. From the very first encounter it is clear that he is highly sensitive to what he perceives to be unfair. The initial interview is a mere exchange of information. Tom had been assigned to the metal workshop. There he has made good contact with other participants and was enthusiastic about the metal work. A social pedagogue reported to the counselor that conflicts had arisen between him and his instructors. Tom had become very angry when he was prevented from charging his cell phone while an instructor did so as a matter of course. Then he also had difficulty with instructions that he felt were contradictory depending on which instructor gave them to him. The social pedagogue who initiated our first appointment suspected that he was transferring his relationship with his father to the instructor. From 2013 to 2021 a total of 535 participants underwent the vocational qualification measure. Demographic information is shown in Table 1. With regard to participation in initial interviews and counseling, details can only be provided for individual years. This is due to the fact that vocational qualification measures took place over the years and could be started at any time during the year. For example, the initial interview of participants who started the vocational qualification measure at the end of the year might not have taken place until the following year. Furthermore, some participants dropped out of and returned to the vocational training measure, so that initial interviews and counseling could only be offered after a delay. Tom is the third of seven children. His parents have lived apart since childhood and he was growing up in juvenile facilities and alternating with his father, who is an alcoholic and often violent. His younger siblings live with his father. 3.1 Case vignette–Tom There, he takes over the father’s child-rearing responsibilities such as homework supervision, meal preparation, and grocery shopping. Despite several changes of residence, he manages to graduate from secondary school and subsequently he takes part in the vocational qualification program. He likes to come to the workshop frequently and also would like to stay longer to escape the stressful situation and the threat from his father at home. He does not want to turn to youth welfare because he fears that his siblings would have a similarly hard time in the youth welfare facilities. In the course of counseling, it turns out that Tom generally has a hard time tolerating inconsistent or even unfair behavior from adults. After about 3 months in the vocational qualification program, he becomes an apprentice. There he works side by side with his ex-partner. The mixture of mutual private resentment and the desire for support in achieving the training goals overwhelms Tom. With the help of counseling, Tom manages to set boundaries for his father in an argument. From this point on, his father stops physically abusing him. He has moved into a shared apartment and starts training to become a nursing assistant. Understanding Tom’s inner conflict, as evidenced by his conflicts with instructors, and reflecting on difficult decisions in counseling enables Tom’s transition from school to work. Figure 2 shows the percentage of participants in the vocational qualification measure, who appeared for an initial interview, respectively, counseling. Over the years, between 39 and 97% (M = 69.2%; SD = 14.6%) of the participants in the vocational qualification measure took part in the initial interview. It appears that not all of the participants could be reached for an initial interview. Reasons for this were, for example, a start of the vocational qualification measure at the end of a year, early dropout and limited compliance. For a closer look at the participation in the initial interview and counseling, 2019 serves as an example (Table 2). Figure 3 shows the gender distribution of participants in 2019. Due to a lack of data, the gender distributions can only be described and not statistically compared. However, it can be noted that the higher proportion of men in the vocational qualification measure remains even when participating in the initial interview. 3.1 Case vignette–Tom With regard to the existing gender gap in the utilization of psychosocial support services (Rommel et al., 2017), this result shows the importance of the institutional context for the utilization of psychosocial assistance. 2.3 Clients Ideally, all elements of the counseling process are pursued, but this is not always possible. offers. They frequently have psychiatric diagnoses from childhood and adolescence that make them feel stigmatized. As a rule, individual problems extend far beyond the problem of lack of qualification. Participants of the vocational qualification measure attribute their current problems to a particular disadvantage they have suffered since childhood in their social environment, but above all in their family of origin. These problems are often based on negative attachment experiences, which make it difficult for young people to enter into lasting social relationships in the private and vocational spheres (such as training contracts themselves without a training contract at the beginning of a new apprenticeship year or without a qualification at the end of compulsory schooling. The working environment in the majority of workshops is characterized by a high proportion of men. Participants are typically hard to reach for institutions like schools and workplaces. Their current life situations and biographies are most often filled with tensions. Frequently occurring psychosocial conflicts and impaired physical and mental health lead together to an impairment of the ability to work. Due to negative experiences in the past, the affected persons are often suspicious of therapeutic 04 frontiersin.org frontiersin.org Möhring et al. 10.3389/fpsyg.2023.1112919 10.3389/fpsyg.2023.1112919 frontiersin.org 3.2 Case vignette–Carla The total number of registered participants in the vocational qualification measure for each year is shown as a line. The percentage of these participants who appeared for an initial interview is represented by the bars and numbers. The striped areas represent the percentage of participants who took advantage of psychosocial counseling following the initial interview. Participants who took part in the measure in more than one year are counted repeatedly. Vocational qualification measure Initial interview Counseling Referral Number of participants N = 88 n = 60 n = 25 n = 6 Percentage of all participants (%) 68 28 7 The table shows the number of participants in the vocational qualification measure in 2019 who could be reached by the counseling offer (initial interview, counseling, referral). n = 88 n = 60 72% 28% vocational qualification measure 68% 32% initial interview male female FIGURE 3 Gender distribution of participants in 2019. The figure illustrates the gender distribution of participants in 2019. In a total of 88 participants in the vocational qualification measure, 63 were male and 25 female (left side). Of the 60 participants who took part in the initial interview, 41 were men and 19 women (right side). Vocational qualification measure Initial interview Counseling Referral Number of participants N = 88 n = 60 n = 25 n = 6 Percentage of all participants (%) 68 28 7 The table shows the number of participants in the vocational qualification measure in 2019 who could be reached by the counseling offer (initial interview, counseling, referral). n = 88 72% 28% vocational qualification measure n = 60 68% 32% initial interview male female n = 60 FIGURE 3 Gender distribution of participants in 2019. The figure illustrates the gender distribution of participants in 2019. In a total of 88 participants in the vocational qualification measure, 63 were male and 25 female (left side). Of the 60 participants who took part in the initial interview, 41 were men and 19 women (right side). her children again. Due to her drug use, she was no longer able to adequately care for the children and the Youth Welfare Office became aware of her. Seeing the children again is her constant motivation to change. Frontiers in Psychology 3.2 Case vignette–Carla The relationship between counseling and personal development in the school-to-work transition is illustrated by two case-vignettes. Carla (20) wears work clothes, has several piercings and makes an overall well-groomed impression. She is friendly and somewhat reserved. She has a likeable charisma. She initially attends the vocational qualification measure on the basis of the integration agreement with the job center without any real goal. After some time, she takes a liking to the work in the wood workshop and appears more regularly. She also accepts the offer of psychosocial counseling because of the good contact with the counselor. At the beginning, the focus is on her cannabis use. She has high absenteeism and cannot take advantage of the services offered at the vocational training. Her two daughters have been in the care of various foster families for almost three years. She is a frequent visitor there and hopes to one day be able to live with TABLE 1 Demographics of participants. Age [years] Gender [n (%)] N Range M SD Male Female 535 15–31 20.0 2.7 385 (72%) 150 (28%) The total number of participants in the vocational qualification measure from 2013 to 2021, their age and gender are displayed. TABLE 1 Demographics of participants. The total number of participants in the vocational qualification measure from 2013 to 2021, their age and gender are displayed. Frontiers in Psychology 05 frontiersin.org Möhring et al. 10.3389/fpsyg.2023.1112919 FIGURE 2 Participation 2013 to 2021. The total number of registered participants in the vocational qualification measure for each year is shown as a line. The percentage of these participants who appeared for an initial interview is represented by the bars and numbers. The striped areas represent the percentage of participants who took advantage of psychosocial counseling following the initial interview. Participants who took part in the measure in more than one year are counted repeatedly. FIGURE 2 Participation 2013 to 2021. The total number of registered participants in the vocational qualification measure for each year is shown as a line. The percentage of these participants who appeared for an initial interview is represented by the bars and numbers. The striped areas represent the percentage of participants who took advantage of psychosocial counseling following the initial interview. Participants who took part in the measure in more than one year are counted repeatedly. FIGURE 2 Participation 2013 to 2021. frontiersin.org 3.2 Case vignette–Carla However, she has been addicted to drugs for more than ten years and managed to withdraw from harder drugs by attending an addiction clinic shortly before she started working at the vocational training institute. As an adolescent, she was placed in several inpatient psychiatric facilities and survived serious suicidal attempts. She is severely traumatized due to early childhood at the hands of her abusive father. Today, she suffers from being the only one of four children not to have a career and being ridiculed by her siblings for her mental illness, when they would lovingly care for her depressed mother. She uses the counseling situation primarily as a venue for trusting conversations that eventually give her enough confidence to stop her cannabis use. Feelings that had not found a place 06 frontiersin.org Möhring et al. 10.3389/fpsyg.2023.1112919 inside her for years come to the surface. With the help of the counseling sessions, she learns to deal with them and gradually gains more confidence in herself. After almost a year in the vocational qualification program, she finally signs a three-year training contract in a specialist trade. She sees her children regularly at meetings accompanied by the youth welfare office. is important for participants to achieve the skills they need to begin with an apprenticeship. If this aim remains out of reach it is required to counteract the ongoing chronification of their personal problems and inner conflicts. The encounter presented here blurs the lines between psychosocial counseling and political programs of social integration into the labor market. This specificity of the counseling setting is discussed below. The counseling offer has reached about a quarter of the participants in vocational qualification measures over the years. An improvement in opportunities in the school-to-work transition can be demonstrated in many counseling processes. The opportunity for self-reflection, the increase of self-confidence and stability through regular contact with a trusted person, are to be mentioned as direct personal gains through participation in the service. The professional background of the counselors usually counteracts the further consolidation of chronic psychological stress. This is because psychosocial counseling represents a therapeutic approach to mental health problems that have already persisted for a long time in a low-threshold, non-clinical setting. Contact with therapeutic settings is sometimes difficult for clients due to bad experiences in the past. Two thirds of the participants were reached by the initial interview. 3.3 Reflection of the case vignettes While this prevents stigmatizing, it also leaves out opportunities of services that are based on clinical diagnosis. Less than a tenth of the participants could be placed in outpatient or inpatient therapy during counseling. In this case, not only the higher threshold of psychotherapy plays an important role, but also the good relationship with the counselor that develops in the course of counseling. They might understand psychotherapy as a continuation of counseling, which, however, offers more possibilities in dealing with emotional conflicts. • Treatment of mental health problems: Without referral to a clinical setting, clients do not receive clinical diagnosis. While this prevents stigmatizing, it also leaves out opportunities of services that are based on clinical diagnosis. Less than a tenth of the participants could be placed in outpatient or inpatient therapy during counseling. In this case, not only the higher threshold of psychotherapy plays an important role, but also the good relationship with the counselor that develops in the course of counseling. They might understand psychotherapy as a continuation of counseling, which, however, offers more possibilities in dealing with emotional conflicts. • Compromising: Problems at the workshop are addressed in the counseling. Working through these conflicts becomes more difficult because of the proximity and cooperation between the counseling center and the vocational training institute. On the one hand, this has a positive effect on the cooperation between the social pedagogues and the counselors. On the other hand, this may also lead to role diffusion. A lack of protection of the counseling setting • Compromising: Problems at the workshop are addressed in the counseling. Working through these conflicts becomes more difficult because of the proximity and cooperation between the counseling center and the vocational training institute. On the one hand, this has a positive effect on the cooperation between the social pedagogues and the counselors. On the other hand, this may also lead to role diffusion. A lack of protection of the counseling setting Frontiers in Psychology 3.2 Case vignette–Carla The low-threshold offer of psychosocial counseling might be especially important for men, as clinical services in Germany are more often used by women (Rommel et al., 2017). In 2019 65% of the male participants in the vocational qualification measure took part in an initial interview compared to 75% of the female participants. A strength of the project is the opportunity to reach these men from the unprivileged working class milieu. In counseling, destabilization through confrontation with inner conflicts is encountered by the possibility of using a longer period of time (12 months) compared to common counseling services. This time period also allows a deeper understanding of the impact of the mental health problems on transition from school to work in each individual case. On- site multiprofessional cooperation increases the awareness of the issue of mental stress among social pedagogues and instructors. Nevertheless, there are difficulties and limits of the counseling service: frontiersin.org 3.3 Reflection of the case vignettes Vaillant’s (2012) theory on the connection between the prevalence of immature defenses and vocational failure or low social class in adulthood can be illustrated in the presented case vignettes Tom and Carla. Tom uses immature defense mechanisms such as splitting into good and bad, projecting unconscious experiences into current relationship partners, and denying incompatible current perceptions. He seems to maintain a splitted image of his parents as good mother and bad father, to project his threatening and neglecting father image onto instructors and supervisors, and to deny his disfunctional living situation by reporting it in a humorous way. These mechanisms result in a neurotically entangled life situation with the father and siblings, to major problems at school and later to a complicated and difficult path to pursue a professional career. Due to her negative relationship experiences in form of abuse, rejection and devaluation, Carla shows immature defense mechanisms in form of acting out, projection and devaluation of self-image. For example, she uses drugs to suppress overwhelming negative and offending feelings, lacks trust in others and herself, and appears to have introjected the negative image her family ascribes to her. Due to her immature defenses, she falls into a psychologically unstable state, has suicide attempts, loses custody of her children, and has no high school diploma or career path before entering the vocational training institute where she works out her personal path to apprenticeship. The path into the phase of growing up according to Erikson and those who continue to research in his sense certainly describes much of the situation of the two participants. Their attempt to find a stable orientation in their professional lives does not stand on its own, but is connected with the readjustment of their relationship to their families and places of growing up, with the search for a lasting partnership and the completion of puberty, which lead to an increased self-confidence. Nevertheless, unresolved personal trauma in earlier stages of identity development continue to influence the current situation of both clients and mark limits to their personal development. However, this limitation of development is two-sided. The scope for young adults’ personal development depends both on the opportunities afforded them by adult workers and on the institutional environment to which they belong (King, 2022). • Treatment of mental health problems: Without referral to a clinical setting, clients do not receive clinical diagnosis. 4 Discussion: reached by the counseling The title of this section points at the proximity of the described concept of psychosocial counseling for participants in a vocational qualification measure in the life phase of emerging adulthood. It 07 Möhring et al. 10.3389/fpsyg.2023.1112919 10.3389/fpsyg.2023.1112919 5 Conclusion All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication. In the psychosocial counseling at a vocational training institute, individuals with severe mental health problems who are resistant to psychotherapy in a clinical setting, are given an impression of the benefits of psychotherapeutic intervention. The acceptance of the counseling offer as well as the obstacles in referral to psychotherapeutic services show that participants in vocational qualification measures need a low-threshold intervention offer. In a multiprofessional network, insights into the complex nature and dynamics of psychological processes are gained on site, leading to an improvement in the life situation of socially disadvantaged emerging adults. Far more research is needed to understand what offers can reach this lower social class group for psychotherapeutic help. Conflict of interest The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Publisher’s note All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher. Data availability statement The original contributions presented in this study are included in this article/supplementary material, further inquiries can be directed to the corresponding author. Ethics statement occurrs repeatedly because of the proximity. Counselors may be personally involved with instructors and social pedagogues through the shared work context. Also, several clients in one workshop often have the same counselor. It is possible that these circumstances limit clients’ perceived freedom to talk about problems with instructors or participants during counseling, despite the promise of confidentiality. However, due to comparable settings, these difficulties also occur in clinical day-care or inpatient settings. occurrs repeatedly because of the proximity. Counselors may be personally involved with instructors and social pedagogues through the shared work context. Also, several clients in one workshop often have the same counselor. It is possible that these circumstances limit clients’ perceived freedom to talk about problems with instructors or participants during counseling, despite the promise of confidentiality. However, due to comparable settings, these difficulties also occur in clinical day-care or inpatient settings. The studies involving humans were approved by the Ethics Committee at the Department of Medicine at the Justus Liebig University of Giessen. The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent for participation in this study was provided by the participants’ legal guardians/next of kin. Written informed consent was obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article. • Conflicting goals: The counseling sometimes leads to a shift in focus from educational work to psychosocial problems among the clients themselves, but also in the institution. • Conflicting goals: The counseling sometimes leads to a shift in focus from educational work to psychosocial problems among the clients themselves, but also in the institution. References Arnett, J. J. (2004). Emerging adulthood: the winding road from the late teens through the twenties. Oxford: Oxford University Press. Arnett, J. J. (2004). Emerging adulthood: the winding road from the late teens through the twenties. Oxford: Oxford University Press. King, V. (2022). Familie und Generativität. Handbuch Familie. Wiesbaden: Springer. doi: 10.1007/978-3-531-19985-6_54 Balint, M., Balint, E., and Ornstein, P. H. (2013). Focal psychotherapy. An example of applied psychoanalysis. London: Routledge. doi: 10.4324/9781315014043 Marcia, J. (1966). Development and validation of ego-identity status. J. Pers. Soc. Psychol. 3, 551–558. doi: 10.1037/h0023281 Marcia, J. (1966). Development and validation of ego-identity status. J. Pers. Soc. Psychol. 3, 551–558. doi: 10.1037/h0023281 Möhring, J. V., Schäfer, D., and Brosig, B. (2021). Risky transitions. Vocational development between traumatic biography and the search for identity. Adv. Appl. Sociol. 11, 669–694. doi: 10.4236/aasoci.2021.1112056 Blos, P. (1962). Adoleszenz. Eine Psychoanalytische Interpretation. Stuttgart: Klett- Cotta. Blos, P. (1962). Adoleszenz. Eine Psychoanalytische Interpretation. Stuttgart: Klett- Cotta. Brosig, B., Möhring, J., and Müller, K. (2017). “Soziopsychosomatik,” in Psychosomatische Medizin, ed. T. Uexküll (München: Elsevier). doi: 10.1016/B978- 3-437-21833-0.00021-8 Brosig, B., Möhring, J., and Müller, K. (2017). “Soziopsychosomatik,” in Psychosomatische Medizin, ed. T. Uexküll (München: Elsevier). doi: 10.1016/B978- 3-437-21833-0.00021-8 Plaude, A., and Rašˇcevska, M. (2011). The association of cognitive abilities, emotional intelligence, defense mechanisms and coping with employment and unemployment. Baltic J. Psychol. 12, 83–101. doi: 10.1037/e602772012-007 Erikson, E. H. (1994). Identity and the life cycle. New York, NY: WW Norton & company. Erikson, E. H. (1994). Identity and the life cycle. New York, NY: WW Norton & company. Richter, H. E. (1978). “Was ist Sozialtherapie?,” in Engagierte Analysen: Über den Umgang des Menschen mit dem Menschen; Reden, Aufsätze, Essays, ed. Idem (Hamburg: Rowohlt). Förster-Chanda, U. (2020). Jugend im Risiko: Psychosoziale Beratung in der Benachteiligtenförderung. Psychosozial. Usha: Förster-Chanda. doi: 10.30820/9783837977110 Rommel, A., Bretschneider, J., Kroll, L. E., Prütz, F., and Thom, J. (2017). Inanspruchnahme psychiatrischer und psychotherapeutischer Leistungen– Individuelle Determinanten und regionale Unterschiede. J. Health Monit. 2, 3–22. Förster-Chanda, U., Geist, C., Balser, W., Moser, V., and Brosig, B. (2013). “Innere Konflikte und Biografien von Teilnehmern einer Jugendwerkstatt [Inner conflicts and biographies of participants in a youth workshop],” in Psychosoziale Beratung in pädagogischen Handlungsfeldern, ed. H. Schnoor (Gießen: Psychosozial). Förster-Chanda, U., Geist, C., Balser, W., Moser, V., and Brosig, B. (2013). Snarey, J. R., and Vaillant, G. E. (1985). How lower-and working-class youth become middle-class adults: The association between ego defense mechanisms and upward social mobility. Child Dev. 56, 899–910. doi: 10.2307/1130102 Vaillant, G. E. (1992). Ego mechanisms of defense: a guide for clinicans and researchers. Washington, DC: American Psychiatric Pub. Vaillant, G. E. (1971). Theoretical hierarchy of adaptive ego mechanisms: A 30- year follow-up of 30 men selected for psychological health. Arch. Gen. Psychiatry 24, 107–118. doi: 10.1001/archpsyc.1971.01750080011003 Skodol, A. E., and Perry, J. C. (1993). Should an axis for defense mechanisms be included in DSM-IV? Compreh. Psychiatry 34, 108–119. doi: 10.1016/0010-440X(93) 90055-9 References “Innere Konflikte und Biografien von Teilnehmern einer Jugendwerkstatt [Inner conflicts and biographies of participants in a youth workshop],” in Psychosoziale Beratung in pädagogischen Handlungsfeldern, ed. H. Schnoor (Gießen: Psychosozial). Schäfer, D., Möhring, J. V., and Brosig, B. (2020). Hilfen zwischen Schule und Beruf. Eine Evaluation der Bewältigung psychischer Problemlagen. Forum Sozialarbeit Gesundheit 4, 25–28. Freud, A. (1937). The ego and the mechanisms of defense. London: Hogarth. 08 Frontiers in Psychology frontiersin.org Möhring et al. Möhring et al. 10.3389/fpsyg.2023.1112919 Snarey, J. R., and Vaillant, G. E. (1985). How lower-and working-class youth become middle-class adults: The association between ego defense mechanisms and upward social mobility. Child Dev. 56, 899–910. doi: 10.2307/1130102 Schäfer, D., Möhring, J. V., and Brosig, B. (2022). Psychosomatische Belastungen in der beruflichen Qualifizierung. Forum Sozialarbeit Gesundheit 4, 50–53. Schnoor, H. (2011). “Einführung,” in Psychodynamische Beratung: Ein Anwendungsgebiet der Psychoanalyse, ed. Idem (Göttingen: Vandenhoeck & Ruprecht). doi: 10.13109/9783666401701 Schnoor, H. (2011). “Einführung,” in Psychodynamische Beratung: Ein Anwendungsgebiet der Psychoanalyse, ed. Idem (Göttingen: Vandenhoeck & Ruprecht). doi: 10.13109/9783666401701 Vaillant, G. E. (1971). Theoretical hierarchy of adaptive ego mechanisms: A 30- year follow-up of 30 men selected for psychological health. Arch. Gen. Psychiatry 24, 107–118. doi: 10.1001/archpsyc.1971.01750080011003 Silva, J. M. (2013). Coming up Short. Working Class Adulthood in an Age of Uncertainty. Oxford: Oxford University Press. doi: 10.1093/acprof:oso/ 9780199931460.001.0001 Silva, J. M. (2013). Coming up Short. Working Class Adulthood in an Age of Uncertainty. Oxford: Oxford University Press. doi: 10.1093/acprof:oso/ 9780199931460.001.0001 Vaillant, G. E. (1992). Ego mechanisms of defense: a guide for clinicans and researchers. Washington, DC: American Psychiatric Pub. Skodol, A. E., and Perry, J. C. (1993). Should an axis for defense mechanisms be included in DSM-IV? Compreh. Psychiatry 34, 108–119. doi: 10.1016/0010-440X(93) 90055-9 Vaillant, G. E. (2012). Triumphs of experience. In Triumphs of Experience. Cambridge, MA: Harvard University Press. doi: 10.4159/harvard.97806740 67424 09 09 Frontiers in Psychology frontiersin.org
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PENGARUH INTERNET FINANCIAL REPORTING (IFR) DAN TINGKAT PENGUNGKAPAN INFORMASI WEBSITE TERHADAP FREKUENSI PERDAGANGAN SAHAM PADA PERUSAHAAN PERTAMBANGAN YANG TERDAFTAR DI BEI
Jurnal Ilmiah Manajemen dan Bisnis
2,020
cc-by
4,566
Abstrak Pertambangan adalah sebagian atau seluruh kegiatan dalam rangka penelitian, pengelolaan dan pengusahaan mineral atau batubara yang meliputi penyelidikan umum, eksplorasi, studi kelayakan, konstruksi, penambangan, pengolahan dan pemurnian, pengangkutan dan penjualan, serta kegiatan pascatambang. Tujuan penelitian ini adalah untuk mengetahui pengaruh Internet Financial Reporting dan Tingkat Pengungkapan Informasi Website terhadap Frekuensi Perdagangan Saham Perusahaan Pertambangan. Jenis penelitian ini adalah asosiatif kausal yaitu penelitian yang bertujuan untuk menganalisis hubungan antar satu variabel dengan variabel lainnya. Penelitian ini menggunakan pendekatan kuantitatif. Populasi dalam penelitian ini adalah seluruh perusahaan pertambangan yang terdaftar di BEI. Sampel yang digunakan sebanyak 41 perusahaan yang terdaftar di BEI tahun 2016-2018 yang diambil dengan menggunakan beberapa kriteria. Metode analisis data dilakukan dengan regresi linear berganda. Hasil penelitian menunjukkan bahwa Internet Financial Reporting dan Tingkat Pengungkapan Informasi Website berpengaruh secara signifikan terhadap frekuensi perdagangan saham.. p g g p p g g ta Kunci: Internet Financial Reporting, Tingkat Pengungkapan Informasi Website, Frekuensi Perdagangan Saha Kata Kunci: Internet Financial Reporting, Tingkat Pengungkapan Informasi Website, Frekuensi Perdagangan Saham Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayud Program Studi Manajemen, Fakultas Ekonomi Dan Bisnis, Universitas Medan Area, Indonesia Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayud Program Studi Manajemen, Fakultas Ekonomi Dan Bisnis, Universitas Medan Area, Indonesia Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111, DOI: Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111, DOI: Jurnal Ilmiah Manajemen dan Bisnis (JIMBI) Available online http://jurnalmahasiswa.uma.ac.id/index.php/jimbi Diterima: 11 Januari 2020; Disetujui: 11 Februari 2020; Dipublish: 11 Maret 2020 The Effect Of Internet Financial Reporting (IFR) And The Level Of Disclosure Of Website Information On Share Trading Frequency In Mining Companies Listed On The IDX. Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayud Program Studi Manajemen, Fakultas Ekonomi Dan Bisnis, Universitas Medan Area, Indon Abstract Mining is part or all of the activities in the research, management and exploitation of minerals or mining that discusses the investigation, exploration, feasibility study, construction, mining, processing and refining, transportation and sales, as well as post-mining activities. The purpose of this study was to study the effect of Internet Financial Statements and Website Information Disclosure Levels on the Frequency of Mining Company Stock Trading. This type of research is causal associative research that is aimed at analyzing the relationship between one variable with another variable. This research uses quantitative. The population in this study are all companies listed on the IDX. The samples used were 41 companies listed on the Stock Exchange in 2016-2018 taken using several criteria. The method of data analysis is done by multiple linear regression. The results showed that Internet Financial Reporting and Website Information Disclosure Rate were considered significant to the frequency of stock trading. g f f q y f g Keywords: Internet Financial Reporting, Website Information Disclosure Rate, Stock Trading Frequency. How to Cite: Sinaga, I.M. Lubis, Adelina. Prayudi, Ahmad (2020). Pengaruh Internet Financial Reporting (IFR) Dan Tingkat Pengungkapan Informasi Website Terhadap Frekuensi Perdagangan Saham Perusahaan Pertambangan Yang Terdaftar Di BEI. Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111 1 This work is licensed under a Creative Commons Attribution 4.0 *E-mail: ika29misdayantisinaga@gmail.com ISSN (Online) (Online) *E-mail: ika29misdayantisinaga@gmail.com ISSN Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR) Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR) PENDAHULUAN Di era globalisasi sekarang ini, teknologi semakin maju dan berkembang pesat terutama dalam bidang komunikasi dan internet.Perubahan yang ditimbulkan dari adanya perkembangan teknologi membawa dampak terhadap masyarakat dan juga bisnis suatu perusahaan (Mahzura, 2018). Perusahaan yang dapat bersaing dalam kompetisi bisnis adalah perusahaan yang mampu mengimplementasikan teknologi kedalam perusahaannya (Sari, 2020). Dengan menggunakan Internet perusahaan dapat menyajikan informasi keuangan dengan kuantitas yang lebih tinggi, biaya lebih murah dan bisa menjangkau para pemakai secara luas (Hasibuan & Syahrial, 2019). Internet juga dapat digunakan sebagai sarana mengakomodasi perubahan yang dibutuhkan dalam pelaporan perusahaan (Nasution, 2016).dengan adanya internet dapat memudahkan untuk meningkatkan frekuensi pelaporan informasi keuangan kepada publik mengingat kebutuhan akan penyediaan informasi dengan cepat (Rahmadhani, 2019). Kebutuhan informasi oleh pengguna (stakeholder) sangat bermacam-macam, sehingga perubahan pendekatan bisnis dengan penenekanan lebih terhadap kebutuhan stakeholder sangat penting (Sari, 2018). Dimana stakeholder membutuhkan sistem pelaporan yang sangat fleksibel yang dapat memungkinkan mereka memperoleh informasi dengan lebih mudah (Dalimunthe, 2018). Dengan menggunakan internet perusahaan dapat memberikan pelaporan yang fleksibel, relevan dan tepat waktu yang spesifik untuk stakeholder . Dalam beberapa tahun terakhir ini. Internet Financial Reporting (IFR) berkembang sebagai media yang paling cepat untuk menginformasikan hal-hal yang bererkaitan dengan perusahaan. Dimana informasi keuangan yang disajikan dalam IFR telah mencakup laporan keuangan yang komprehensif, termasuk di dalamnya footnotes, bagian laporan keuangan, financial highlights dan ringkasan laporan keuangan.Pemberian sinyal yang dilakukan oleh manajer perusahaan melalui Internet Financial Reporting (IFR) dengan media website akan membuat kepercayaan para investor meningkat untuk dapat menanamkan modalnya di perusahaan tersebut (Rizki, 2020). Ketika kepercayaan investor meningkat maka dengan ini akan menyebabkan permintaan atas saham juga semakin tinggi. Hal ini sinkron dengan teori pasar sekuritas yang diperdagangkan yaitu merupakan cerminan dari semua informasi yang tersedia di pasar. Beberapa perusahaan yang profitable akan mengambil keuntungan dari praktek IFR untuk mencapai transparansi informasi dan untuk mempercepat pengungkapan kabar baik (good news) melalui IFR yang dapat mempengaruhi investor secara positif dalam keputusan investasi. y g p p g p p Peraturan tentang pelaporan keuangan melalui internet di indonesia telah diatur dalam Keputusan Ketua Badan Pengawas Pasar Modal dan Lembaga Keuangan (BAPEPAM-LK) Nomor Kep-431/BL/2012 PASAL 3. Dimana dalam peraturan tersebut telah di informasikan bahwa emiten atau perusahaan publik yang memiliki laman (website) sebelum berlakunya peraturan ini diwajibkan memuat laporan tahunan pada laman (website) tersebut. PENDAHULUAN Bagi emiten atau perusahaan publik yang belum memiliki laman (website), maka dalam jangka waktu 1 (satu) tahun sejak berlakunya peraturan tersebut, emiten atau perusahaan publik yang dimaksud wajib memiliki laman (website) yang memuat laporan tahunan. (Putu Diah dan I Gusti Ayu, 2017). Internet Financial Reporting dan pengungkapan informasi website sebenarnya tidak menjadi suatu kewajiban bagi perusahaan. Hal ini dilakukan secara sukarela oleh perusahaan dengan tujuan agar perkembangan bisnis perusahaan mereka dapat diakses oleh siapapun yang membutuhkan informasi yang diinginkan oleh para pengguna yang tentunya berkaitan dengan perusahaan tersebut. Menurut Lai (dalam Hargyantoro,2010) mengatakan bahwa pertengahan tahun 2000, United State Securities and Exchange Peraturan tentang pelaporan keuangan melalui internet di indonesia telah diatur dalam Keputusan Ketua Badan Pengawas Pasar Modal dan Lembaga Keuangan (BAPEPAM-LK) Nomor Kep-431/BL/2012 PASAL 3. Dimana dalam peraturan tersebut telah di informasikan bahwa emiten atau perusahaan publik yang memiliki laman (website) sebelum berlakunya peraturan ini diwajibkan memuat laporan tahunan pada laman (website) tersebut. Bagi emiten atau perusahaan publik yang belum memiliki laman (website), maka dalam jangka waktu 1 (satu) tahun sejak berlakunya peraturan tersebut, emiten atau perusahaan publik yang dimaksud wajib memiliki laman (website) yang memuat laporan tahunan. (Putu Diah dan I Gusti Ayu, 2017). Internet Financial Reporting dan pengungkapan informasi website sebenarnya tidak menjadi suatu kewajiban bagi perusahaan. Hal ini dilakukan secara sukarela oleh perusahaan dengan tujuan agar perkembangan bisnis perusahaan mereka dapat diakses oleh siapapun yang membutuhkan informasi yang diinginkan oleh para pengguna yang tentunya berkaitan dengan perusahaan tersebut. Menurut Lai (dalam Hargyantoro,2010) mengatakan bahwa pertengahan tahun 2000, United State Securities and Exchange 2 Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111,, Commision (SEC US) membuat pernyataan bahwa semua perusahaan publik direkomendasikan untuk membuat dan memberikan semua informasi legal yang dimandatkan tentang kinerja perusahaan untuk diberikan kepada semua pihak yang berkepentingan di waktu yang sama. Melalui keputusan tersebut diharapkan setiap perusahaan-perusahaan agar segera dapat mengumumkan kepada masyarakat mengenai informasi perusahaan. Mengungkapkan informasi keuangan dan non-keuangan secara sukarela di internet dapat menciptakan transparansi informasi yang tinggi. Hal ini dapat membuat investor dapat lebih cepat bereaksi atau melakukan tindakan terhadap saham perusahaan yang membuat harga saham lebih cepat bergerak secara otomatis mempertinggi frekuensi perdagangan saham. Pemanfaatan website perusahaan sebagai sarana pelaporan informasi pada dasarnya memiliki manfaat yang baik bagi perusahaan. Perusahaan mencoba untuk menumbuhkan kepercayaan bagi stakeholder dengan memberikan informasi yang dapat dipercaya langsung melalui website perusahaan. PENDAHULUAN Tingkat informasi yang dicantumkan dalam website perusahaan diharapkan dapat menarik minat investor lain agar ikut berinvestasi di perusahaan mereka. Namun pemanfaatan dari penggunaan website ini tidak langsung mendorong perusahaan untuk meningkatkan pengungkapan informasi website. Hal ini dibuktikan dari hasil penelitian dari Stein et al., (2013) yang menunjukkan masih banyak perusahaan yang tidak memanfaatkan website perusahaan dalam melakukan pengungkapan laporan keuangan maupun non-keuangan. Tingkat pengungkapan website perusahaan dirasa masih kurang memadai, padahal menurut hasil penelitian Arin et al (2014) tingkat pengungkapan informasi website merupakan salah satu faktor yang mempengaruhi frekuensi perdagangan saham. Frekuensi perdagangan saham Frekuensi perdagangan saham merupakan jumlah transaksi perdagangan, baik jual atau beli, suatu saham perusahaan pertambangan. Data frekuensi perdagangan saham diambil melalui Indonesia Stock Exchange (IDX) Fact. Tingkat Pengungkapan Informasi Website Tingkat Pengungkapan Informasi Website merupakan Bentuk penyampaian informasi untuk dapat mengurangi asimetri informasi dimana di dalam website tersebut terdiri dari profil dasar perusahaan, berita terbaru, item operasional, informasi keuangan, dan informasi saham perusahaan. Dengan metode pengukuran menggunakan skala poin 4 sistem untuk memberikan informasi poin dalam setiap item Rentamg nilai 0-40. Internet Financial Reporting(IFR) Internet Financial Reporting merupakan Pencantuman informasi keuangan perusahaan melalui internet atau website. Dengan metode pengukuran menggunakan Variabel dummy, dimana perusahaan yang menerapkan IFR nilainya “1” sedangkan perusahaan yang tidak menerapkan IFR nilainya “0”. METODE PENELITIAN Jenis penelitian yang digunakan adalah penelitian yang bersifat asosiatif kausal. Menurut sugiyono (2012). Penelitian asosiatif kausal adalah suatu penelitian yang bersifat menanyakan hubungan antara dua variabel atau lebih. Untuk memperoleh data dan informasi yang berkenaan dengan masalah yang diteliti, maka penelitian ini dilakukan dengan mengambil sampel perusahaan Pertambangan yang terdaftar di Bursa Efek Indonesia, dimana data tersebut dapat diakses melalui Indonesia Stock Exchange (IDX) Fact. Populasi dalam penelitian ini adalah seluruh perusahaan pertambangan yang terdaftar di Bursa Efek Indonesia. Sedangkan sampel yang digunakan dalam penelitian 3 ka Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR) adalah 41 perusahaan pertambangan yang terdaftar di BEI periode 2016-2018 yang diambil dengan menggunakan kriteria. 1. Variabel Bebas (X) 1. Variabel Bebas (X) a. X1 : Internet Financial Reporting (IFR) b. X2 : Tingkat Pengungkapan Informasi Website 2. Variabel Terikat (Y) :Frekuensi Perdagangan Saham. : Internet Financial Reporting (IFR) p g ( ) : Tingkat Pengungkapan Informasi Website 2. Variabel Terikat (Y) :Frekuensi Perdagangan Saham. 2. Variabel Terikat (Y) :Frekuensi Perdagangan Saham. Teknik Analisis Data Teknik analis data yang digunakan dalam penelitian ini menggunakan model analisis regresi berganda dengan program SPSS 23 sebagai media menganalisis data. Analisis data untuk pengujian hipotesis ini menggunakan analisis regresi linear berganda untuk menguji ada tidaknya pengaruh variabel independet (Internet financial reporting dan Tingkat pengungkapan informasi website) terhadap variabel terikat (Frekuensi perdagangan saham) yang dinyatakan dalam persamaan sebagai berikut: Keterangan : Keterangan : Y = Frekuensi Perdagangan Saham A = Nilai Konstanta b1, 2, 3 = Nilai Koefisien Regresi X1 = Internet Financial Reporting X2 = Tingkat Pengungkapan Informasi Website e = Standard Error Y=a +b1 X1 + b2 X2 + b3 X3 + e Pengujian Asumsi Klasik 1. Uji Normalitas j Uji Normalitas bertujuan untuk menguji apakah model regresi variabel berdistribusi normal. 2 Uji M l ik li i 2. Uji Multikolinearitas j Uji Multikolinearitas bertujuan untuk menguji apakah di dalam model regresi linear ditemukan adanya korelasi yang tinggi diantara variabel bebas 3. Uji Heteroskedastisitas 3. Uji Heteroskedastisitas 3. Uji Heteroskedastisitas Uji Heteroskedastisitas bertujuan untuk mengetahui kesamaan varian masing- masing variabel independen terhadap variabel dependen Uji Heteroskedastisitas bertujuan untuk mengetahui kesamaan varian masing- masing variabel independen terhadap variabel dependen 4. Uji Autokorelasi j Uji Autokorelasi bertujuan untuk menguji apakah dalam model regresi ada korelasi antara kesalahan pengganggu pada periode t dengan kesalahan pengganggu pada periode t-1 (sebelumnya). METODE PENELITIAN Uji Autokorelasi bertujuan untuk menguji apakah dalam model regresi ada korelasi antara kesalahan pengganggu pada periode t dengan kesalahan pengganggu pada periode t-1 (sebelumnya). Uji t dimaksudkan untuk melihat secara parsial apakah ada pengaruh signifikan dari variabel independen (X) terhadap variabel dependen (Y). Bentuk pengujian ini yaitu Uji t dimaksudkan untuk melihat secara parsial apakah ada pengaruh signifikan dari variabel independen (X) terhadap variabel dependen (Y). Bentuk pengujian ini yaitu - H0 : bi = 0 (variabel independen secara parsial tidak berpengaruh positif dan signifikan terhadap variabel dependen) - Ha : bi ≠ 0 (variabel independen secara parsial berpengaruh positif dan signifikan terhadap variabel dependen). Uji F yaitu untuk mengetahui apakah variabel independen terhadap variabel dependen secara bersama-sama (simultan). Dengan tingkat signifikan α=0,05. Kriteria pengambilan keputusan sebagai berikut : Uji F yaitu untuk mengetahui apakah variabel independen terhadap variabel dependen secara bersama-sama (simultan). Dengan tingkat signifikan α=0,05. Kriteria pengambilan keputusan sebagai berikut : 1. Apabila Fhitung > Ftabel dan tingkat signifikan (α) <0,05 maka secara simultan semua variabel independen berpengaruh signifikan terhadap variabel dependen. 4 Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111,, 2. Apabila Fhitung < Ftabel dan tingkat signifikan (α) >0,05 maka secara simultan semua variabel independen tidak berpengaruh signifikan terhadap variabel dependen. p Uji Koefisien Determinasi (R2 ) Uji Koefisien Determinasi (R ) Koefisien determinasi digunakan untuk menguji seberapa besar peranan variabel dependen untuk menjelaskan variabelitas variabel dependen dalam model regresi. Koefisien determinasi digunakan untuk menguji seberapa besar peranan variabel independen untuk menjelaskan variabelitas variabel dependen dalam model regresi. HASIL PENELITIAN Uji Normalitas Gambar 1 Uji Normalitas HASIL PENELITIAN Uji Normalitas Gambar 1 Uji Normalitas Pada grafik di atas, dapat dilihat bahwa grafik Normal Probability Plot menunjukkan data terdistribusi normal, hal itu terjadi karena data menyebar tepat disekitar garis diagonal dan mengikuti arah garis diagonal. Uji Multikolinearitas Uji Multikolinearitas Tabel 1 Uji Multikolinearitas Coefficientsa Model Collinearity Statistics Tolerance VIF 1 (Constant) IFR 1.000 1.000 TK.INFO 1.000 1.000 Uji Multikolinearitas Tabel 1 Uji Multikolinearitas Coefficientsa Model Collinearity Statistics Tolerance VIF 1 (Constant) IFR 1.000 1.000 TK.INFO 1.000 1.000 a. Dependent Variable: LN_FREKUENSI a. Dependent Variable: LN_FREKUENSI Hasil perhitungan Tolerance menunjukkan tidak ada variabel independen yang memiliki nilai Tolerance kurang dari 0,10 yang berartitidak ada korelasi yang tinggi antara variabel independen Internet financial reporting dan Tingkat pengungkapan informasi website. Uji Heteroskedastisitas j Berdasarkan uji Heteroskedastisitas tidak terdapat pola yang jelas serta titik-titik menyebar diatas dan diangka 0 sumbu Y maka tidak terjadi Heteroskedastisitas. Sehingga dapat diambil kesimpulannya bahwa model regresi dinyatakan baik dan layak untuk digunakan karena tidak terjadi heteroskedastisitas. 5 Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR) Uji Autokorelasi Tabel 2 Uji Autokorelasi Model Summaryb Durbin-Watson 1.348 a. Predictors: (Constant),TK.INFO, IFR b. Dependent Variable: LN_FREKUENSI Berdasarkan Uji Autokorelasi menyatakan nilai Statistic Durbin-Watson yaitu 1,348 nilai Statistic Durbin-Watson tidak lebih kecil dari 1 atau tidak lebih besar dari 3, sehingga dapat disimpulkan bahwa tidak terjadi gejala autokorelasi. Uji Autokorelasi Berdasarkan Uji Autokorelasi menyatakan nilai Statistic Durbin-Watson yaitu 1,348 nilai Statistic Durbin-Watson tidak lebih kecil dari 1 atau tidak lebih besar dari 3, sehingga dapat disimpulkan bahwa tidak terjadi gejala autokorelasi. Berdasarkan Uji Autokorelasi menyatakan nilai Statistic Durbin-Watson yaitu 1,348 nilai Statistic Durbin-Watson tidak lebih kecil dari 1 atau tidak lebih besar dari 3, sehingga dapat disimpulkan bahwa tidak terjadi gejala autokorelasi. Analisis Regresi Linear Berganda Analisis Regresi Linear Berganda Analisis Regresi Linear Berganda Tabel 3 HasilRegresi Linear Berganda Coefficientsa Berdasarkan hasil data diatas diperoleh persamaan Regresi Linear Berganda sebagai berikut : Model Unstandardized Coefficients Standar dized Coefficients T Sig. B Std. Error Beta 1 (Constant) - 20.138 2.275 - 8.850 .000 IFR 1.843 1.102 .108 1.672 .098 TK.INFO 6.803 .593 .740 11.473 .000 a. Dependent Variable: LN_FREKUENSI Tabel 3 HasilRegresi Linear Berganda Coefficientsa Berdasarkan hasil data diatas diperoleh persamaan Regresi Linear Berganda sebagai berikut : FREKUENSI = -20,138 +1,843IFR + 6,803TK.INFO + e FREKUENSI = -20,138 +1,843IFR + 6,803TK.INFO + e FREKUENSI = -20,138 +1,843IFR + 6,803TK.INFO + e FREKUENSI 20,138 1,843IFR 6,803TK.INFO e Berdasarkan persamaan tersebut dapat digambarkan sebagai berikut: Berdasarkan persamaan tersebut dapat digambarkan sebagai berikut: a. Jika variabel independen Internet financial reporting (IFR) dan tingkat pengungkapan informasi website bernilai konstan, maka variabel dependen Frekuensi perdagangan saham perusahaan akan bernilai sebesar- 20,138. a. Jika variabel independen Internet financial reporting (IFR) dan tingkat pengungkapan informasi website bernilai konstan, maka variabel dependen Frekuensi perdagangan saham perusahaan akan bernilai sebesar- 20,138. g g b. Analisis Koefisien Determinasi (R2 ) Pembahasan Variabel Internet financial reporting (IFR) Terhadap Frekuensi Perdagangan Saham Berdasarkan hasil uji t diketahui bahwa Internet financial reporting tidak berpengaruh signifikan terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di Bursa Efek Indonesia tahun 2016-2018 Hasil penelitian ini tidak sejalan dengan hasil penelitian Arin et al., (2014) dan stein et al.,(2014) yang menunjukkan adanya pengaruh positif dan signifikan Internet financial reporting terhadap frekuensi perdagangan saham. Hal bisa saja terjadi karena hampir semua perusahaan di indonesia sudah melakukan praktik IFR dalam melakukan pelaporan keuangan melalui website perusahaan sehingga tidak lagi menjadi faktor yang mempengaruhi frekuensi perdagangan saham. a. Dependent Variable: LN_FREKUENSI Analisis Koefisien Determinasi (R2 ) 7 7 Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR) Tabel 7 Uji Koefisien Determinasi (R2) Model Summaryb Mod el R R Square Adjusted R Square Std. Error of the Estimate 1 .750a .563 .554 1.54442 a. Predictors: (Constant), TK.INFO, IFR b. Dependent Variable: LN_FREKUENSI Tabel 7 Uji Koefisien Determinasi (R2) M d l S b Tabel 7 Hasil uji koefisien determinasi diperoleh R square (R2) sebesar 0,563. Artinya, variasi perubahan frekuensi perdagangan saham dapat dijelaskan oleh variabel Internet financialreporting (IFR) dan tingkat pengungkapan informasi website sebesar 56%, sedangkan sisanya sebesar 44% dipengaruhi oleh faktor lain. a. Dependent Variable: LN_FREKUENSI Jika Koefisien regresi variabel independen (X1) Internet financial reporting (IFR) bernilai positif sebesar 1,843 artinya setiap terjadi penambahan pada variabel independen Internet financial reporting sebesar 1 satuan dengan asumsi variabel lain dianggap konstan, maka akan meningkatkan variabel dependen frekuensi perdagangan saham perusahaan sebesar 1,843. c. Jika koefisien regresi variabel independen (X2) Tingkat pengungkapan informasi website bernilai positif sebesar 6,803 artinya setiap terjadi penambahan pada variabel independen Tingkat pengungkapan informasi website sebesar 1 satuan dengan asumsi variabel lain dianggap konstan, maka akan meningkatkan variabel dependen Frekuensi perdagangan saham perusahaan sebesar 6,803. 6 Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111,, 1. Uji Parsial (Uji t) Tabel 4. Hasil Uji t Coefficientsa Model Unstandardized Coefficients Standardiz ed Coefficients T Sig. B Std. Error Beta 1 (Constant) -20.138 2.275 - 8.850 .000 IFR 1.843 1.102 .108 1.672 .098 TK.INFO 6.803 .593 .740 11.473 .000 a. Dependent Variable: LN_FREKUENSI Berdasarkan hasil uji diatas, maka diketahui pengaruh masing-masing variabel sebagai berikut : Berdasarkan hasil uji diatas, maka diketahui pengaruh masing-masing variabel sebagai berikut : g 1. Variabel Internet financialreporting (X1) frekuensi perdagangan saham (Y) f p g ( ) p g g ( ) Dari tabel Coefficients diperoleh nilai thitung 1,672 sedangkan ttabel 1,65765 dan nilai signifikansi 0,098. Karena nilai t hitung < t tabel dan nilai sig 0,098> 0,05. Artinya internet financial reporting tidak berpengaruh signifikan terhadap frekuensi perdagangan saham. Variabel Tingkat pengungkapan informasi website (X2) terhadap frekuensi perdagangan saham (Y). Dari tabel Coefficients diperoleh nilai thitung 11,473 sedangkan ttabel 1,65765 dan nilai sig 0,000. Karena nilai t hitung > t tabel dan nilai signifikan 0,000 <0,05. Artinya Tingkat pengungkapan informasi website berpengaruh positif dan signifikan terhadap frekuensi perdagangan saham. p p g g 2. Uji Simultan (Uji F) p p g g 2. Uji Simultan (Uji F) 2. Uji Simultan (Uji F) Tabel 6 Hasil Uji F ANOVAa Model Sum of Squares Df Mean Square F Sig. 1 Regression 322.368 2 161.184 67.576 .000b Residual 250.448 105 2.385 Total 572.816 107 a. Dependent Variable: LN_FREKUENSI b. Predictors: (Constant), TK.INFO, IFR Dari hasil perhitungan uji F, nilai Fhitung 67,576 dan nilai Ftabel sebesar 3,07 dan signifikan (sig) 0,000 < 0,05. Artinya Internet financial reporting dan tingkat pengungkapan informasi website berpengaruh secara simultan terhadap Frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016- 2018. Variabel Tingkat Perdagangan Saham Berdasarkan hasil uji t Tingkat pengungkapan informasi website berpengaruh positif dan signifikan terhadap frekuensi perdagangan saham. Hasil penelitian ini sejalan dengan hasil penelitian Hargyantoro (2010) yang menunjukkan adanya pengaruh positif dan signifikan Tingkat pengungkapan informasi website terhadap frekuensi perdagangan saham, berpengaruhnya Tingkat pengungkapan informasi website terhadap frekuensi perdagangan saham ini berarti semakin baik perusahaan dalam memanfaatkan website perusahaan dalam memberikan informasi perusahaan kepada pihak eksternal, maka frekuensi perdagangan saham perusahaan akan meningkat.Variabel Internet financial reporting dan Tingkat pengungkapan informasi website secara simultan Terhadap frekuensi perdagangan saham Berdasarkan hasil Uji simultanInternet financial reporting dan tingkat pengungkapan informasi website berpengaruh secara simultan terhadap Frekuensi perdagangan saham.Hasil penelitian ini sejalan dengan hasil penelitian Kadek Arin Prasasti, 1 I Made Pradana Adiputra, 2 Nyoman Ari Surya Dharmawan yang menunjukkan bahwa Internet financial reporting dan Tingkat pengungkapan informasi website berpengaruh secara simultan terhadap Frekuensi perdagangan saham. Penerapan IFR dalam website perusahaan dengan Tingkat pengungkapan informasi website yang tinggi, akan memicu kenaikan pada frekuensi perdagangan saham perusahaan. semakin banyak permintaan dan penawaran yang berujung pada transaksi oleh investor yang akan memicu kenaikan frekuensi perdagangan saham. SIMPULAN SIMPULAN 8 Jurnal Ilmiah Manajemen dan Bisnis (JIMBI), 1(1) 2020: 106-111,, Berdasarkan analisis data dan pembahasan hasil penelitian yang sudah diuraikan, maka dapat disimpulkan sebagai berikut : Berdasarkan analisis data dan pembahasan hasil penelitian yang sudah diuraikan, maka dapat disimpulkan sebagai berikut : 1 VariabelInternet financial reporting tidak berpengaruh terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016-2018. 1 VariabelInternet financial reporting tidak berpengaruh terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016-2018. 2 Variabel Tingkat pengungkapan informasi website berpengaruh positif dan signifikan terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016-2018. y g 3 Variabel Internet financial reporting dan tingkat pengungkapan informasi website secara simultan berpengaruh terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016-2018. y g 3 Variabel Internet financial reporting dan tingkat pengungkapan informasi website secara simultan berpengaruh terhadap frekuensi perdagangan saham pada perusahaan pertambangan yang terdaftar di BEI tahun 2016-2018. DAFTAR PUSTAKA A O'Brien, J. (2005). Pengantar Sistem Informasi Perspektif Bisnis dan Manajerial. Jakarta: Salemba Empat. Abdillah, M. R. (2015). Pengaruh Kepemilikan Saham dan Kinerja Keuangan Terhadap Pengungkapan Internet Financial Reporting Studi Empiris Pada Perusahaan Manufaktur yang Terdaftar di BEI Tahun 2013. Jurnal Ekonomi dan Bisnis, Vol. 8 No. 2. Ainiyah, M. S. (2015). Pengaruh Internet Financial Reporting, Tingkat Pengungkapan Informasi Website dan Ukuran Perusahaan Terhadap Frekuensi Perdagangan Saham Studi Pada Perusahaan Pertambangan yang Terdaftar di BEI. Buletin Ekonomi, Vol. 13 No. 2. Basuki, d. P. (2017). Analisis Regresi Dalam Penelitian Ekonomi & Bisnis : Dilengkapi Aplikasi SPSS Dan Eview Rajawali Pers. Dita Amelia, L. (2016). Pengaruh Internet Financial Reporting, Ketetapan Waktu Penyampaian Informasi Keuangan Website, Ukuran Perusahaan, dan Profitabilitas Terhadap Abnormal Return Studi Empiris Pada Perusahaan Pertambangan yang Terdaftar di BEI Periode 2012-2014. Jurnal Ilmiah Mahasiswa Ekonomi Akuntansi (JIMEKA) , Vol. 1, No.2 Halaman 210-226. Febri Rahadi, F. R. (2019). Pelaporan Keuangan di Internet dan Pengaruhnya terhadap Aktivitas Perdagangan Saham. Jurnal Manajemen dan Kewirausahaan, Vol. 10 No.01. Ghozali, I. (2011). Aplikasi Analisis Multivariate Dengan Program SPSS. Semarang: Badan Penerbit Universitas Diponegoro. ozali, I. (2013). Aplikasi Analisis Multivariat Dengan Pro Ghozali, I. (2013). Aplikasi Analisis Multivariat Dengan Program Program IBM SPSS.21 Edisi 7. Jakarta: Salemba Empat. Hargyantoro. (2010). Pengaruh Internet Financial Reporting dan Tingkat Pengungkapan Informasi Website terhadap Frekuensi Perdagangan Saham Perusahaan . Skripsi Universitas Diponegoro. Hargyantoro. (2010). Pengaruh Internet Financial Reporting dan Tingkat Pengungkapan Informasi Website terhadap Frekuensi Perdagangan Saham Perusahaan . Skripsi Universitas Diponegoro. Hargyantoro, D. D. (2012). Pengaruh Internet Financial Reporting dan Tingkat Pengungkapan Informasi Website Terhadap Frekuensi Perdagangan Saham Perusahaan. Jurnal Akuntansi Indonesia, Vol. 1 Hal. 11-19. hartono. (2013). Teori Portofolio dan Analisis Investasi. Yogyakarta: Edisi Kedelapan. Hartono, J. (2013). Teori Portofolio dan Analisis Investasi, BPFE. Yogyakarta: Edisi Kedelapan. Indrawati. (2015). Metode Penelitian Manajemen dan Bisnis Konvergensi Teknologi Komunikasi dan Informasi . Bandung: Aditama. Kasmir S (2010) Bank dan Lembaga Keuangan Lainnya Jakarta: Raja Graffindo Pers ( ) j g g f Bandung: Aditama. Kasmir, S. (2010). Bank dan Lembaga Keuangan Lainnya. Jakarta: Raja Graffindo Pers. Kasmir, S. (2010). Bank dan Lembaga Keuangan Lainnya. Jakarta: Raja Graffindo Pers. Kominfo. (2015, February 4). Statistik Pengguna Internet. Retrieved from 2019: Dunia:www.kominfo.com Kominfo. (2019, February 04). from Statistik Pengguna Internet. Retrieved from www.kominfo.com. Kominfo. (2019, February 04). Retrieved. Retrieved from from Statistik Pengguna Internet: http:www.kominfo.com Prasasti, A. d. (2014). djo, S. S. (2018). Etika dalam Bisnis & Profesi Akuntan dan Tata Kelola Perusahaan. Jakarta: Salemba Empat. DAFTAR PUSTAKA Pengaruh Internet Financial Reporting Dan Tingkat Pengungkapan Informasi Website Terhadap Frekuensi Perdagangan Saham Studi Pada Perusahaan Finansial Yang Terdaftar Di BEI Tahun 2008-2012. e-Journal S1 Ak Universitas Pendidikan Ganesha, Volume 2 No: 1. ( y ) gg p Prasasti, A. d. (2014). Pengaruh Internet Financial Reporting Dan Tingkat Pengungkapan Informasi Website Terhadap Frekuensi Perdagangan Saham Studi Pada Perusahaan Finansial Yang Terdaftar Di BEI Tahun 2008-2012. e-Journal S1 Ak Universitas Pendidikan Ganesha, Volume 2 No: 1. Prawoto, B. d. (2017). Analisis Regresi Dalam Penelitian Ekonomi & Bisnis : Dilengkapi Aplikasi SPSS Dan Eviews. Jakarta: Rajawali Pers. Prawoto, B. d. (2017). Analisis Regresi Dalam Penelitian Ekonomi & Bisnis : Dilengkapi Aplikasi SPSS Dan Eviews. Jakarta: Rajawali Pers. Puri, D. R. (2013). Analisis Faktor-Faktor yang Mempengaruhi Indeks Pelaporan Keuangan Melalui Internet. Jurnal Reviuw Akuntansi dan Keuangan, Vol. 3 No. 1 . Puri, D. R. (2013). Analisis Faktor-Faktor yang Mempengaruhi Indeks Pelaporan Keuangan Melalui Internet. Jurnal Reviuw Akuntansi dan Keuangan, Vol. 3 No. 1 . Rahardjo, S. S. (2018). Etika dalam Bisnis & Profesi Akuntan dan Tata Kelola Perusahaan. Jakarta: Salemba Empat. 9 9 Ika Misdayanti Sinaga, Adelina Lubis, Ahmad Prayudi, Pengaruh Internet Financial Reporting (IFR Setyarini, D. (2014). Pengaruh Internet Financial Reporting, Tingkat Pengungkapan dan Ketetapan Waktu Penyampaian Informasi Keuangan Website terhadap Harga Saham. Jurnal Ilmu Manajemen dan Akuntansi Terapan , Vol.5 No.2. p Sugiyono, P. D. (2015). Metode Penelitian dan Pengembangan. Bandung: Alfabeta. p ono, P. D. (2015). Metode Penelitian dan Pengembangan. Bandung: Alfabeta. g y ( ) g g g Susanto, A. (2018). Pengaruh Karakteristik Perusahaan dan Corporate Governance Terhadap Ketetapan Waktu Corporate Internet Reporting. Parsimonia, Vol.5 No.2. Susanto, A. (2018). Pengaruh Karakteristik Perusahaan dan Corp Corporate Internet Reporting. Parsimonia, Vol.5 No.2. Mahzura, T. A. S. (2018). The Analysis of The Influence of Financial Performance, Company Size, Ownership Structure, Leverage and Company Growth on Company Values in Food and Beverage Industry Companies Listed in IDX 2012-2016 Period. International Journal of Public Budgeting, Accounting and Finance, 1(4), 1-12. Sari, W. P. (2020). The Effect of Financial Distress and Growth Opportunities on Accounting Conservatism with Litigation Risk as Moderated Variables in Manufacturing Companies Listed on BEI. Budapest International Research and Critics Institute (BIRCI-Journal): Humanities and Social Sciences, 3(1), 588- 597. Hasibuan, R. P. S., & Syahrial, H. (2019, August). Analysis Of The Implementation Effects Of Accrual-Based Governmental Accounting Standards On The Financial Statement Qualities. DAFTAR PUSTAKA In Proceeding ICOPOID 2019 The 2nd International Conference on Politic of Islamic Development (Vol. 1, No. 1, pp. 18-29). Nasution, I. R. (2016). Analisis Rasio Leverage Terhadap Profitabilitas Pada Perusahaan Otomotif Dan Komponen Yang Terdaftar Di Bursa Efek Indonesia. JURNAL AKUNTANSI DAN BISNIS: Jurnal Program Studi Akuntansi, 2(2). ( ) Rahmadhani, S. N. (2019). PENGARUH MARJIN LABA BERSIH DAN PENGEMBALIAN ATAS EKUITAS TERHADAP HARGA SAHAM PERUSAHAAN INDUSTRI BARANG KONSUMSI. Jurnal Akuntansi dan Bisnis: Jurnal Program studi Akuntansi, 5(2), 170-175. J g , ( ), Sari, W. P. (2018). Pengaruh Rasio Keuangan Terhadap Harga Saham Pada Perusahaan Manufaktur Go Public yang Terdaftar di Bursa Efek Indonesia. Jurnal Ilmiah Skylandsea, 43-52. DALIMUNTHE, M. I. (2018). PENGARUH PERENCANAAN PAJAK TERHADAP MANAJEMEN LABA PADA SUB SEKTOR PERTAMBANGAN LOGAM DAN MINERAL YANG TERDAFTAR DI BURSA EFEK INDONESIA. JURNAL MUTIARA AKUNTANSI, 3(2), 1-16. ( ) Rizki, A. (2020). Meta Analisis: Variasi Penelitian Tingkat Sarjana Mahasiswa Akuntansi Universitas Medan Area. Journal of Education, Humaniora and Social Sciences (JEHSS), 2(3), 673-683. 10
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The high-K calc-alkaline to shoshonitic volcanism of Limnos, Greece: implications for the geodynamic evolution of the northern Aegean
Contributions to mineralogy and petrology
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cc-by
16,810
Abstract Genetic models for the formation of K-rich magmas in subduction-related settings range from partial melting of subduc- tion-affected mantle sources to melting of crustal rocks depending on the local tectonic framework. The Miocene high-K calc-alkaline to shoshonitic rocks of Limnos Island reflect the magmatic activity in the northern Aegean, which migrated southwards in response to trench retreat and the collision of continental terranes in the Hellenic subduction system. New whole rock and mineral data of basaltic andesites, dacites and monzonites from Limnos indicate that the magmas underwent fractional crystallization of olivine, clinopyroxene, amphibole, apatite, and Fe-Ti oxides at 1100 to 700 °C and 0.5 to 0.1 GPa without significant assimilation of crustal rocks during the magma evolution. The strong enrichment of large ion lithophile elements and light rare-earth elements relative to depleted heavy rare earth and high-field strength elements points towards a mantle source that has been extensively hybridized by subducted sedimentary material. New Sr–Nd-Pb isotope data reveal a distinct isotopic composition of the Limnos rocks with high 207Pb/204Pb at low 206Pb/204Pb and 143Nd/144Nd ratios that is likely related to the subduction of the continental crustal succession of the Apulian block which was subducted prior to the onset of magmatism on Limnos. Partial melting models assuming a hybridized mantle source suggest that the primary melts of Limnos formed by melting of a phlogopite pyroxenite at melting degrees of 5 to 10%. Compositional differences between high-K calc-alkaline and shoshonitic magmas are explained by variable melting degrees and varying amounts of sediment supply to the mantle. The magmatic and tectonic evolution of Limnos island is typical for the Oligocene and Miocene vol- canic centres of the migrating western Aegean arc front. Keywords  Radiogenic isotopes · Subduction · Partial melting · Petrogenesis · Shoshonite · Trace element * Leon Gläser GlaeserLeon@gmx.de The high‑K calc‑alkaline to shoshonitic volcanism of Limnos, Greece: implications for the geodynamic evolution of the northern Aegean Leon Gläser1   · Anna Grosche1 · Panagiotis C. Voudouris2 · Karsten M. Haase1 Received: 23 March 2022 / Accepted: 10 July 2022 / Published online: 21 July 2022 © The Author(s) 2022 Received: 23 March 2022 / Accepted: 10 July 2022 / Published online: 21 July 2022 © The Author(s) 2022 1 GeoZentrum Nordbayern, Friedrich-Alexander-Universität (FAU) Erlangen-Nürnberg, Schlossgarten 5, 91054 Erlangen, Germany Communicated by Timothy L. Grove. 2 Faculty of Geology and Geoenvironment, National and Kapodistrian University of Athens, 15784 Athens, Greece Contributions to Mineralogy and Petrology (2022) 177: 73 https://doi.org/10.1007/s00410-022-01940-7 Contributions to Mineralogy and Petrology (2022) 177: 73 https://doi.org/10.1007/s00410-022-01940-7 ORIGINAL PAPER Introduction Other models suggest the formation of K-rich magmas in continental arcs by melting of sedi- ment diapirs or mélanges of sediment with hydrated peri- dotite in the hot region of the mantle wedge (Behn et al. 2011; Marschall and Schumacher 2012). Primitive magmas in some arcs have high-Mg andesitic compositions which could represent melts from mantle peridotite with high water content or mixtures of peridotite with sedimentary mate- rial (Kelemen 1995; Straub et al. 2008). Additionally, many K-rich magmas seem to form after subduction ceased and are thus believed to be ‘post-collisional’ due to melting of metasomatized lithospheric mantle or lower crustal rocks (e.g. Sekine and Wyllie 1983; Foley 1992; Condamine and Médard 2014). However, lithospheric mantle of the upper plate that is not part of the convecting mantle wedge has temperatures < 1100 °C (Perrin et al. 2018). Partial melt- ing of peridotite with such low temperature requires either massive addition of volatiles or the re-heating by hot mantle material, for example, following extension and rifting of the lithosphere causing an ascent of hot asthenosphere. y ) Widespread extension is believed to have commenced in the Rhodope massif in middle Eocene time and from then on progressed southwestwards (Brun et al. 2016). The exten- sion was caused by the southward retreat of the Hellenic trench as a result of slab-rollback, induced by the subduc- tion and accretion of continental blocks (Faccenna and Brun 2008). Paleomagnetic data revealed that the extension fol- lowed a clockwise rotation of the continental blocks open- ing the Aegean Sea (Brun and Sokoutis 2010; van Hins- bergen et al. 2005). Additionally, post-orogenic collapse and crust-mantle delamination may have played a role in the formation of the extensional structures, such as meta- morphic core-complexes and sedimentary basins, that can be observed in the Aegean (Brun et al. 2016; Kydonakis et al. 2015). Slab retreat was accompanied by systematic southward migration of magmatic activity in the western Aegean (e.g. Jolivet et al. 2015) which was suggested to reflect consecutive ascent of mélange diapirs from the slab top (Schaarschmidt et al. 2021a). Alternatively, lithospheric delamination or slab detachment may have been the cause for melt generation causing, for example, calc-alkaline and shoshonitic volcanism in western Anatolia (e.g. Aldanmaz et al. 2000). The early to middle Miocene age of the western Anatolian volcanism correlates with the volcanic activity of Limnos, which could suggest a similar origin. Introduction et al. 1993). Additionally, the composition of the magmas is frequently altered during the ascent through the lithosphere, particularly by reaction with the rocks of the continental crust (e.g. Davidson et al. 2005). Thus, many volcanic rocks along continental subduction zones are andesitic to rhyolitic yielding little evidence for primary mafic magmas from the mantle in their genesis. There is general consensus that most primary magmas at subduction zones are basaltic and form in the asthenospheric mantle wedge by hydrous melting with variable involvement of decompression melting (Kushiro 2007; Schmidt and Jagoutz 2017). Potassium-rich magmas are frequent in both continental and oceanic subduction zones, and magmas in many arcs range from medium- to high-K calc-alkaline to shoshonitic compositions (Wheller et al. 1987; Robert et al. 1992; Sun and Stern 2001). For example, the K-rich magmas in oceanic island arcs like the Marianas or the Sunda-Banda arcs are generally believed to form from the mantle wedge mainly reflecting the addition Magmas with highly variable compositions form along the Earth’s subduction zones reflecting complex processes in the upper mantle of mixing mantle and crustal rocks, of element transport by hydrous material and of partial melting (Miya- shiro 1974; McCulloch and Gamble 1991; Hawkesworth Communicated by Timothy L. Grove. (0121 3456789) 3 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 2 of 20 73  Page 2 of 20 73  P Cretaceous to Eocene, the north-eastward drifting continen- tal blocks of Pelagonia and Apulia collided with Rhodopia and Serbo-Macedonia, which led to the amalgamation with Eurasia (Kydonakis et al. 2015). Its boundaries are marked by two suture zones that formed after the closure of two Neo-Tethyan ocean branches surrounding Pelagonia. The Vardar-Suture-Zone between Pelagonia and the Serbo-Mac- edonian Massif crosses the Aegean Sea south of Limnos and is most likely linked to the Izmir-Ankara Suture (Çelik et al. 2011). The almost parallel running Pindos suture zone extends southeast of the Dinarides into the South Aegean Sea and separates Apulia to the west from Pelagonia to the east (Fig. 1a). However, the exact locations and correlations of these suture zones are still debated (Marroni et al. 2014; Taymaz et al. 2007). of fluids and partial melts from subducted sediments, con- tinental crust and basaltic crust (e.g. Sun and Stern 2001; Elburg et al. 2004). Introduction Thus, Pe- Piper et al. (2009) proposed that upwelling of the astheno- sphere beneath Limnos was a result of slab breakoff and mantle-derived magmas caused partial melting of the lower crust followed by mixing of the different melts. During the upper Miocene the NE-SW extension was further aided by dextral movements along large-scale strike-slip faults, such as the North Anatolian Fault Zone (NAFZ, Fig. 1a) (Armijo et al. 1999; Brun et al. 2016). The crustal thickness beneath the northern Aegean Sea is estimated at 25 to 30 km, but may have been up to 50 km thick prior to the two-stage back-arc extension in the Oligocene/Miocene and again in the Plio-/Pleistocene (Tirel et al. 2004; Sodoudi et al. 2006; Karabulut et al. 2019). Tirel et al. (2004) point out that the The formation of Cenozoic magmas in the Aegean is closely related to the complex tectonic history with alter- nating periods of ocean subduction and collision/subduction of continental fragments from Eocene to present (Menant et al. 2016; Schaarschmidt et al. 2021a). The occurrence of widespread high-K to shoshonitic magmatism during upper Miocene makes it a suitable area to study the origin of K-rich magmas in subduction-related settings. Here, we pro- vide new petrological and geochemical data on the high-K calc-alkaline to shoshonitic volcanic and plutonic rocks from Limnos island that were interpreted to have formed either during or after subduction. The data are used to assess the influence of fractional crystallization and crustal contamina- tion during the magma evolution. We use trace element and new Sr–Nd–Pb isotope data to determine the source com- ponents of the primary melts and to develop a quantitative partial melting model for different mantle lithologies that can be applied to the genesis of K-rich magmas elsewhere. Regional tectonic background The Aegean subduction zone migrated southwards in the past 30 million years due to slab-rollback, that caused extension in the back-arc and arc region (Jolivet and Brun 2010). The Aegean Sea lies within a complex succession of thrusted terranes that have undergone periods of alternat- ing stress regimes as a result of the ongoing convergence between Africa and Eurasia (Fig. 1a). During the Upper 1 3 3 Page 3 of 20  73 Contributions to Mineralogy and Petrology (2022) 177: 73 0  73 (a) Map of the Aegean Sea depicting the main tectonic units of e and western Turkey. (b) Simplified map of Limnos with sam- ations. Samples used for trace element and Sr–Nd–Pb isotope analysis are marked with yellow rims. Extent of the volcanic according to Innocenti et  al. (1994) and Pe-Piper et  al. (2009 locations of faults according to Pavlides et al. (2009) Fig. 1   (a) Map of the Aegean Sea depicting the main tectonic units of Greece and western Turkey. (b) Simplified map of Limnos with sam- ple locations. Samples used for trace element and Sr–Nd–Pb isotope analysis are marked with yellow rims. Extent of the volcanic units according to Innocenti et  al. (1994) and Pe-Piper et  al. (2009) and locations of faults according to Pavlides et al. (2009) 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 4 of 20 crust of the Aegean Sea shows a flat Moho similar to the Basin and Range probably reflecting lower crustal flow. crust of the Aegean Sea shows a flat Moho similar to the Basin and Range probably reflecting lower crustal flow. volcanic rocks indicate ages of 21 to 18 Ma (Innocenti et al. 1994; Pe-Piper et al. 2009). The oldest volcanic products on Limnos belong to the southern Katalakon unit (Fig. 1b), which consists of altered andesitic and dacitic lava domes and hosts the monzonitic intrusion at Cape Fakos. Towards the east, around the Gulf of Moudros, the Katalakon unit is overlain by pyroclastic deposits, dacites, and latites of the Romanou unit, which show the highest potassium contents. Based on age dates, Pe-Piper et al. (2009) suggested that the Romanou unit is older than the northern Katalakon unit. The Myrina unit is located in southwest Limnos, and sepa- rated from the northern Katalakon unit by the NW–SE strik- ing Kaspakas fault (Pavlides et al. 2009). Regional tectonic background It comprises the island’s youngest volcanic domes and lava flows with mainly dacitic compositions. The northern lavas along the coastline have been assigned to the Agios Ioannis subunit by Pe-Piper et al. (2009) due to their transitional compositions in rela- tion to lavas of the two neighbouring Myrina and Katalakon units (Fig. 1b). Whereas Innocenti et al. (2009) suggested an origin of the magmas in the mantle above a subducting slab, Pe-Piper et al. (2009) proposed that the Limnos lavas represent mixtures of a mantle-derived basanitic melt and a partial melt of amphibolite in the lower crust. Sampling and sample preparation For this study, 50 magmatic rock samples were collected and studied at the GeoZentrum Nordbayern (Friedrich- Alexander Universität Erlangen-Nürnberg) with a focus on the geochemical whole rock major and trace element as well as radiogenic isotope composition. The samples mostly consist of lavas from domes and flows as well as from dykes. According to the geological map after Innocenti et al. (1994), the samples represent the three major volcano- stratigraphic units and are distributed over the entire island (Fig. 1b). In addition, three monzonite samples from the southern Fakos intrusion were examined. Geology of Limnos The island of Limnos covers an area of ~ 400 ­km2 in the northern Aegean Sea, southwest of the island of Samothraki (Fig. 1a). Limnos lies in the Thrace Basin and consists of sedimentary and volcanic rocks forming a rugged morphol- ogy in the west, whereas the eastern portion of Limnos is low with a smooth morphology (Fig. 1b). These two parts of the islands are divided by the Kondias–Kotsinas fault zone consisting of a series of NE–SW striking right-lateral strike-slip faults that may have also affected the emplace- ment of magmatic intrusions (Koukouvelas and Aydin 2002; Pavlides et al. 2009). The sediments are mainly sand- and siltstones with ages from Middle Eocene to Lower Miocene representing deep-marine turbidite deposits with occasional tuff layers overlain by continental conglomerates, marls, and mudrocks (Innocenti et al. 1994; Caracciolo et al. 2011). The continental sediments are overlain and intruded by lava flows and domes, subvolcanic rocks, ignimbrites, and volcaniclas- tic deposits. The oldest rocks of the basement comprise a succession of Middle Eocene to Early Oligocene flysch deposits representing a submarine fan in the fore-arc basin of the migrating subduction zone (Maravelis et al. 2016). From the Late Oligocene to the Middle Miocene three N–S- directed compressional tectonic phases occurred during the deposition of the overlying sedimentary units causing fold- ing of the topmost strata and the development of tensional structures (Tranos 2009). This compression affected the subduction dynamics and was probably due to the collision of the Apulian block with the Eurasian Plate which led to uplift, erosion of the folds, and a transition from marine to continental sediments prior to the onset of Early Miocene volcanism on Limnos (Erbil et al. 2021; Innocenti et al. 1994; Tranos 2009). Tectonic reconstructions of the Aegean subduction zone suggest that the Apulian continental block had been accreted and partially subducted by ~ 23 Ma, which was followed by subduction of oceanic lithosphere of the eastern Mediterranean (Ring et al. 2010; Jolivet et al. 2013). Metasedimentary rocks of the lowest tectonic unit of the Cyclades, the Basal Unit, show the peak of high-pressure metamorphism with 0.8 to 1.0 GPa and 350 to 400 °C and ages of 24 to 21 Ma indicating the subduction of thick lay- ers of clastic and carbonate sediments in the Early Miocene (Ring et al. 2001). Whole rock geochemistry Sample blocks of fresh rock material were ultrasonically cleaned in deionized water and dried for 24 h in a drying oven at 60 °C. After crushing of the blocks by a hydraulic press, an agate mill was used to pulverize the samples to grain sizes below 40 µm. The powder was dried for 24 h at 100 °C. Sixteen samples were selected for trace element anal- yses based on their locations and their major element contents to cover a preferably wide range in ­SiO2 and ­K2O. A detailed description of the preparation procedure is given in Schaarschmidt et al. (2021b) and is briefly described here. The trace element concentrations were determined on a Thermo-Fischer X-Series 2 Q-ICP-MS at GZN together with multiple measurements of the basalt standard BHVO-2 (GeoReM; Jochum et al. 2016). All trace elements had an accuracy better than 9% except for Zn (< 17%), Sb (< 46%), Cs (< 28%) and the long- term reproducibility of 2020 (2 s; n = 30) was better than 14% for all trace elements excluding Ni and Cu (< 20%) and Cs (< 40%) (electronic supplement Table S1). Due to the partial dissolution of zircon during digestion of rock powder, the Zr concentration determined by XRF The contents of the major elements (> 0.1 wt.%) were determined by X-ray fluorescence (XRF) using an energy dispersive Spectro Xepos He X-ray fluorescence spec- trometer at GZN. Samples were homogenized to melt discs using lithium-tetraborate ­(Li2B4O7). Loss on igni- tion (LOI) was calculated by determining the weight dif- ference of each sample before and after the ignition in a muffle furnace. Accuracy and precision of the meas- urements were determined by multiple measurements of the international rock standards BR and BE-N for basalts and GA and AC-E for granites (Govindaraju 1994; elec- tronic supplement Table S1). Repeated analyses of the of the number (n) of analysed crystals. Values in brackets are from enclaves. Pressure and temperature estimates of all mineral analyses are visualized in Fig. 1 Table 1   Temperature, pressure, water content and oxygen fugacity calculations based on different models for amphibole (amph), horn- blende (hbl), clinopyroxene (cpx), magnetite/ilmenite (mt/ilm) and plagioclase (plg) compositions. The results are the average values Table 1   Temperature, pressure, water content and oxygen fugacity calculations based on different models for amphibole (amph), horn- blende (hbl), clinopyroxene (cpx), magnetite/ilmenite (mt/ilm) and plagioclase (plg) compositions. Analysis of mineral compositions Polished thin sections of ten samples of both shoshonitic and high-K rocks from variable locations were petrographically examined and the minerals were analysed using the JEOL JXA-8200 Electron Probe Microanalyser at the GeoZentrum Nordbayern (GZN). For the measurement of core and rim compositions of plagioclase, amphibole and clinopyroxene an electron beam of 3 µm diameter with a current of 15 nA and an acceleration voltage of 15 kV was used. Magnet- ite and ilmenite grains were analysed using a 1 µm beam with a beam current of 20 nA and an acceleration voltage Three major volcanic rock units were suggested to occur on Limnos island (Fig. 1b) in addition to a small-scale monzonite intrusion at Cape Fakos; the effusive Katalakon unit, the pyroclastic Romanou unit, and the Myrina unit consisting of the youngest lava domes and occasional flows (Innocenti et al. 1994). Potassium-Ar ages of the Limnos 1 3 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 5 of 20 73 standards BR and BE-N gave an accuracy better than 9% for ­P2O5, better than 6% for ­Na2O and better than 3% for the remaining major elements. The precision of the analy- sis, expressed as the relative standard deviation (RSD, 2 s), was better than 3% for ­Na2O, better than 2% for MgO and ­P2O5, and better than 1% for all other major elements. For the granite standards GA and AC-E, the accuracy was better than 7% for ­Fe2O3 and better than 5% for all other major elements, except for MgO and ­P2O5, which have too low absolute MgO and ­P2O5 contents in the felsic standard material. The relative precision (2 s) was bet- ter than 1% for all major elements save MgO (12%) and ­P2O5 (6%). of 20 kV. The counting times and detection limits of the analysed elements are listed in Schaarschmidt et al. (2021b) and the results of all mineral analyses can be found in the electronic supplement of this work (Table S1). The mineral compositions were used to estimate the pressure–tempera- ture conditions and the volatile content of the magmas dur- ing crystallization by applying different thermobarometric models (Table 1). Results Results For Sr, Nd, and Pb isotope analysis 100–150 mg of rock powder was dissolved and processed following the proce- dure described in Schaarschmidt et al. (2021b). Lead, Sr and Nd was separated from the rock matrix using differ- ent ion exchange columns (Schaarschmidt et al. 2021b). Isotope measurements of Sr and Nd were carried out on a Thermo-Fischer Triton TIMS (thermal ionization mass spectrometer) at GZN. Strontium isotope measurements were corrected for instrumental mass fractionation assum- ing 88Sr/86Sr = 0.1194 and corrected for the contribution of 87Rb to mass 87. Neodymium isotope data were cor- rected for mass fractionation using a 146Nd/144Nd ratio of 0.7219. Samarium interference on masses 144, 148, 150 was corrected by measuring 147Sm. The Sr isotopic ratios have a maximum internal uncertainty of ± 0.000008 (2 s) and were normalized to the NBS987 standard with 87Sr/86Sr = 0.710250 and an average measured value of 0.710276 ± 0.000011 (2 s, n = 3). Likewise, the Nd isotopic ratios (2 s =  ± 0.000005) were normalized to the Erlangen Nd standard with 143Nd/144Nd = 0.511541 and an average value yielding 0.511538 ± 0.000010 (2 s, n = 4). Lead iso- tope measurements were carried out on a Thermo Fisher Neptune multi-collector ICP-MS at GZN using a 207Pb/204Pb double spike to correct for instrumental mass fractionation. The Pb fraction was diluted with 2% ­HNO3 to a concentra- tion of approximately 20 ppb. One part of this solution was spiked in order to obtain a 208Pb/204Pb ratio of about 1. The double spike, with a 207Pb/204Pb ratio of 0.5, was calibrated against a solution of the NBS982 equal atom Pb standard. Spiked and unspiked sample solutions were introduced into the plasma via a Cetac Aridus desolvating nebulizer, and measured in static mode. Interference of 204Hg on mass 204 was corrected by monitoring 202Hg. An exponential frac- tionation correction was applied offline using the iterative method of Compston and Oversby (1969). The correction was typically 4.5‰ per amu. The typical uncertainties of individual analyses are ± 0.0003, ± 0.0003 and ± 0.0007 for 206Pb/204Pb, 207Pb/204Pb and 208Pb/204Pb, respectively. The isotopic ratios were normalized to the NBS981 stand- ard with 206Pb/204Pb = 16.9410, 207Pb/204Pb = 15.4993, and 208Pb/204Pb = 36.7244. Repeated measurements of the NBS981 Pb isotope standard gave average 206Pb/204Pb, 207Pb/204Pb, 208Pb/204Pb ratios of 16.9405 ± 0.0018, 15.4979 ± 0.0010 and 36.7190 ± 0.0032, respectively (2 s). Petrography The Limnos lavas and the monzonite are characterized by a fine- to medium-grained porphyritic texture with a holo- to hypocrystalline groundmass surrounding phenocrysts of plagioclase, quartz, amphibole, biotite and clinopyroxene. The colour of the groundmass varies between greenish light grey to dark brown. Some samples exhibit orientated phenocrysts (LIM-14, LIM-21, LIM-25). Plagioclase is the dominant phase in all samples and mostly has a euhe- dral to subhedral shape and frequently shows a zonation. Quartz is more abundant in samples of the Katalakon unit, whereas clinopyroxene phenocrysts only occur in rocks of the Romanou unit and the Fakos monzonite. The clino- pyroxenes are of light brown to green colour and rarely show growth zoning. The samples contain accessory apa- tite, zircon, magnetite, ilmenite and titanite. The Fakos monzonite (LIM-14) further contains euhedral orientated K-feldspar phenocrysts. Lavas from Katalakon south and Romanou host enclaves of several cm size with a similar mineralogy, but smaller phenocryst size. Most samples went through minor degrees of hydrothermal alteration resulting in partial chloritization of pyroxene and sericiti- zation of feldspar. Vesicles occur in several samples and are filled with calcite. Whole rock geochemistry The results are the average values High-K samples Monzonite Shoshonitic samples LIM-03 LIM-32 LIM-37 LIM-14 LIM-25 LIM-42 Andersen and Lindsley (1985), Lepage (2003), Powell and Powell (1977), Spencer and Lindsley (1981) Tmt/ilm [°C] 860 – – – 890 730 fO2 − 11 – – – − 11 − 14 n 3 – – – 4 4 Mutch et al. (2016) PAl in hbl [GPa] – 0.53 0.34 (0.43) 0.10 – – n – 6 5 10 – – Putirka et al. (2003) Tcpx [°C] – – – 1052 – 1126 (1136) Pcpx [GPa] – – – 0.24 – 0.52 (0.64) n – – – 5 – 10 Ridolfi et al. (2010) Tamph [°C] – 960 ± 20 890 ± 20 760 ± 20 – – Pamph [GPa] – 0.35 ± 0.04 0.21 ± 0.02 0.04 ± 0.01 – – fO2 – − 9.9 ± 0.4 − 10.9 ± 0.4 − 12.0 ± 0.4 – – H2O [wt.%] – 4.6 ± 0.7 4.4 ± 0.5 2.4 ± 0.4 – – n – 19 10 22 – – Waters and Lange (2015) H2O [wt.%] 5.3 ± 0.1 4.3 ± 0.1 6.7 ± 0.1 – 4.0 ± 0.1 4.8 ± 0.1 n 15 20 8 14 18 12 1 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 6 of 20 73  Page 6 of 20 73  P analysis was considered for all interpretations and diagrams. Results The initial isotope ratios of Sr, Nd and Pb were calculated for each sample by assuming an emplacement age of 20 Ma. The results of whole rock major element, trace element and Sr–Nd-Pb isotope analyses can be found in the electronic Major element composition The ­SiO2 contents of the Limnos samples range between 55 and 65 wt.%, i.e. between basaltic andesites and dac- ites, overlapping with data from previous studies (Innocenti et al. 1994; Pe-Piper et al. 2009). About half of the sam- ples can be classified as high-K rocks with the other half belonging to the shoshonitic series (Fig. 3a, Peccerillo and Taylor 1976). All high-K samples follow the calc-alkaline trend of decreasing ­FeOT and MgO contents and increasing alkali contents with increasing ­SiO2 (Fig. 3). The samples have LOI values between 1 and 7 wt.% indicating variable amounts of hydrous minerals and possibly carbonate altera- tion. For example, the dike sample LIM-07 is propylitized suggesting late hydrothermal alteration. However, most of the samples contain hydrous magmatic minerals biotite and amphibole that can probably account for up to 3 wt.% LOI. The lavas generally follow continuous major element trends of increasing ­K2O and decreasing CaO contents with increasing silica (Fig. 3) whereas alteration should cause less systematic variation. Thus, we conclude that the major element composition of samples with LOI < 3 wt.% is not significantly altered, with the possible exception of some samples with anomalous ­K2O, CaO, ­Al2O3 or ­Na2O con- tents (LIM-07, LIM-10, LIM-16, LIM-19, LIM-25, LIM- 37, LIM-45). However, even samples with high LOI do not show anomalous Sr–Nd-Pb isotopic ratios supporting the reliability of the data. Clinopyroxene occurring in two analysed samples (LIM- 14 and LIM-42) has diopside-augite compositions with the monzonite (LIM-14) clinopyroxenes having slightly higher Ca contents. In the lack of glass analysis, the whole rock compositions of the samples were used for the clino- pyroxene-liquid thermobarometer by Putirka et al. (2003). Clinopyroxene records crystallization temperatures around 1052 °C and 1130 °C and pressures of 0.24 GPa and 0.52 GPa for the monzonite (LIM-14) and the shoshonitic lava (LIM-42), respectively (Fig. 2, Table 1). Magnetite–ilmenite pairs were used to estimate the crys- tallization temperature and the oxygen fugacity of the mag- mas. Based on their Fe content and V/Ti ratio only magmatic -0.2 0 0.2 0.4 0.6 0.8 500 600 700 800 900 1000 P (GPa) LIM-37: Amph. in xenoliths LIM-37: Amph.-phenocrysts LIM-32: Amph.-phenocrysts LIM-14: Amph.-phenocrysts LIM- 42: Cpx. Mineral composition Plagioclase is the most abundant mineral in all rocks from Limnos. The An content ranges from a maximum value of 54 (LIM-03) to the lowest value of 21 (LIM-14) with the majority of crystals with An contents between 30 and 50 (andesine). Plagioclase of one shoshonitic sam- ple (LIM-42) is considerably more potassic (Or content 4 to 9) than crystals of the other samples. Within single plagioclase crystals, the An content decreases from the cores toward the rims in all samples and profiles across individual grains show normal zoning patterns (LIM-03, LIM-37, LIM-42) but also few irregularly zoned grains with more sodic cores in LIM-14. The An contents and the whole rock compositions of each sample were used for the plagioclase-liquid hygrometer by Waters and Lange (2015) to calculate the water content of the melt, ranging from 4.0 to 4.8 wt.% in shoshonitic samples and from 4.3 to 6.7 wt.% in high-K samples (Table 1). Amphibole in samples LIM-14 and LIM-37 largely classifies as Mg-hornblende besides some crystals of tsch- ermakitic compositions with higher Mg and Si contents in 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 7 of 20  7 73 sample LIM-37 (Leake et al. 1997). The thermobarometric model by Ridolfi et al. (2010) was applied to calculate the temperature, pressure, water content and oxygen fugacity of the samples (Table 1). The amphiboles yield crystal- lization conditions of 0.15 to 0.40 GPa at 900 to 960 °C for the high-K lavas and ~ 0.04 GPa at 760 °C for the mon- zonite (Fig. 2, Table 1). The calculated water contents differ slightly compared to the results of the plagioclase hygrometer, but also record the lowest ­H2O contents for the monzonite (Table 1). The calculated oxygen fugacity log fO2 ranges from -12 (LIM-14) to -10 (LIM-32), which corresponds to a ΔFMQ of + 2 (relative to the fayalite- magnetite-quartz buffer). The geobarometer of Mutch et al. (2016) for granitic rocks depends only on the Al content of the amphiboles and yields slightly higher pressures for all three samples (Table 1). and no re-equilibrated magnetites were taken into account (Wen et al. 2017). The remaining mineral pairs provide approximations of the temperature and oxygen fugacity, which correspond to FMQ + 2 at 730 to 890 °C for the sho- shonitic and high-K lavas. The values overlap with previous data from Methana (Schönhofen et al. Mineral composition 2020) and Nisyros (Seymour and Lalonde 1991) at the SAVA, but are higher than the values observed at Santorini (FMQ to FMQ + 1; Fabbro et al. 2013). Major element composition in xenolith LIM-03: Mgt-ilm 0 0.2 0.4 0.6 0.8 1 400 600 800 1000 1200 1400 T (°C) LIM-37 (enclave) LIM-37 (phenocrysts) LIM-32 LIM-14 LIM-42 (enclave) LIM-42 LIM-25 LIM-03 HKCA Amph Monzonite Amph Cpx Cpx Shoshonitic Mgt-ilm Mgt-ilm Al in hbl Al in hbl P (GPa) Fig. 2   Results of the geothermobarometry calculations for high-K calc alkaline (HKCA), shoshonitic and monzonite samples. Al in hbl: Al-in-hornblende barometer after Mutch et al. (2016). Amph: amphi- bole thermobarometer after Ridolfi et al. (2010). Cpx: clinopyroxene thermobarometer after Putirka et  al. (2003). Mgt-ilm: thermometer for magnetite–ilmenite pairs after Andersen and Lindsley (1985), Lepage (2003), Powell and Powell (1977) and Spencer and Lindsley (1981) -0.2 0 0.2 0.4 0.6 0.8 500 600 700 800 900 1000 P (GPa) LIM-37: Amph. in xenoliths LIM-37: Amph.-phenocrysts LIM-32: Amph.-phenocrysts LIM-14: Amph.-phenocrysts LIM- 42: Cpx. in xenolith LIM-03: Mgt-ilm 0 0.2 0.4 0.6 0.8 1 400 600 800 1000 1200 1400 T (°C) LIM-37 (enclave) LIM-37 (phenocrysts) LIM-32 LIM-14 LIM-42 (enclave) LIM-42 LIM-25 LIM-03 HKCA Amph Monzonite Amph Cpx Cpx Shoshonitic Mgt-ilm Mgt-ilm Al in hbl Al in hbl P (GPa) The rocks of the southern Katalakon unit, the adjacent Fakos monzonite and the Romanou unit mainly belong to the shoshonitic series, whereas the Katalakon north and Myrina units follow the high-K trend. Based on the pub- lished age record, this suggests a general evolution from shoshonitic to high-K calc-alkaline magmatism with time (Innocenti et al. 1994; Pe-Piper et al 2009). The major element variations of the Limnos magma series (Fig. 3) are compared to published data from Limnos (Pe-Piper et al. 2009; Fornadel et al. 2012) and similar magmatic rocks from the neighbouring islands Lesbos and Samo- thraki (Pe-Piper and Piper 1992; Pe-Piper et al. 2014; Vlahou et al. 2006) and the South Aegean Volcanic Arc (SAVA; Bailey et al. 2009; Büttner et al. 2005; Elburg et al. 2014, 2018; Elburg and Smet 2020; Fabbro et al. Fig. 2   Results of the geothermobarometry calculations for high-K calc alkaline (HKCA), shoshonitic and monzonite samples. Al in hbl: Al-in-hornblende barometer after Mutch et al. (2016). Amph: amphi- bole thermobarometer after Ridolfi et al. (2010). Cpx: clinopyroxene thermobarometer after Putirka et  al. (2003). Trace element composition The analysed samples from Limnos are compared to sho- shonitic rocks from Lesbos (Pe-Piper et al. 2014) and Samothraki (Vlahou et al. 2006) in a MORB-normalized incompatible element diagram (Sun and McDonough 1989; Fig. 4). The magmas from Limnos, Lesbos and Samothraki all show similar element patterns charac- terized by strong enrichments of Pb and the large ion lithophile elements (LILE) Cs, Rb and Ba compared to a depletion in the high field strength elements (HFSE) Nb, Ta, Zr and Ti. Yet, the shoshonitic samples are slightly more enriched in both element groups compared to high- K samples (Fig. 4). Uranium and Th are greatly enriched in all rocks, but the shoshonitic rocks show a slightly lower Th/U ratio than the high-K calc-alkaline samples, whereas the monzonites exhibit the highest Th/U ratios. All samples are enriched in the light rare earth elements (LREE) and gradually decrease in their contents towards the heavy rare earth elements (HREE), resulting in flat HREE patterns (Fig. 4). The samples further show a small negative Eu anomaly. One shoshonitic sample (LIM-45) has a stronger enrichment in middle and heavy REE. The Limnos magmas show the same correlation of increas- ing La/Sm and decreasing Ba/Th with ­SiO2 as observed throughout the Aegean (Fig. 5a,b). However, the magmas of Limnos, Lesbos and Samothraki reach much higher La/Sm ratios compared to the SAVA. Within the samples of Limnos, the monzonites and many of the shoshonitic lavas have higher intermediate REE (Sm to Tb) contents, lower Ba/Th and higher Th/Nd than the high-K samples, whereas Nb/Zr shows no consistent variation among the magma series (Fig. 5b–d). The age-corrected Sr, Nd and Pb isotope ratios of the Lim- nos magmas exhibit some of the highest 87Sr/86Sr and low- est 143Nd/144Nd and 206Pb/204Pb ratios (Fig. 6a,b) observed in Aegean magmatic rocks and resemble the magmas from Lesbos (Pe-Piper et al. 2014) and Samothraki (Vlahou et al. 2006). In contrast to the younger volcanic rocks of the SAVA (Bailey et al. 2009; Büttner et al. 2005; Elburg et al. 2018; Elburg and Smet 2020; Pe-Piper and Piper 1994), the Lim- nos magmas have higher 207Pb/204Pb and 208Pb/204Pb at lower 206Pb/204Pb (Fig. 6c,d). The majority of the Limnos magmas shows a relatively narrow range of Sr, Nd and Pb isotope ratios, that does not show any variation with increasing ­SiO2 content (Fig. 5e,f). However, three samples show a distinctly different isotope composition. Major element composition Mgt-ilm: thermometer for magnetite–ilmenite pairs after Andersen and Lindsley (1985), Lepage (2003), Powell and Powell (1977) and Spencer and Lindsley (1981) 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 8 of 20 73  Page 8 of 20 (a) Silica vs. ­K2O diagram with the classification of the mag- series after Peccerillo and Taylor (1976). (b–f) Silica content major elements (as analysed). Samples of this work are plotted side previously published data of rocks from Limnos (Pe-Piper 2009), Samothraki (Vlahou et al. 2006), Lesbos (Pe-Piper and Piper 1992; Pe-Piper et al. 2014) and the South Aegean volcan (SAVA; Bailey et al. 2009; Büttner et al. 2005; Elburg et al. 2018; Elburg and Smet 2020; Fabbro et  al. 2013; Innocenti 1981; Kirchenbaur et  al. 2012; Nicholls 1971; Pe-Piper and 1994) Piper 1992; Pe-Piper et al. 2014) and the South Aegean volcanic arc (SAVA; Bailey et al. 2009; Büttner et al. 2005; Elburg et al. 2014, 2018; Elburg and Smet 2020; Fabbro et  al. 2013; Innocenti et  al. 1981; Kirchenbaur et  al. 2012; Nicholls 1971; Pe-Piper and Piper 1994) Fig. 3   (a) Silica vs. ­K2O diagram with the classification of the mag- matic series after Peccerillo and Taylor (1976). (b–f) Silica content vs. major elements (as analysed). Samples of this work are plotted alongside previously published data of rocks from Limnos (Pe-Piper et al. 2009), Samothraki (Vlahou et al. 2006), Lesbos (Pe-Piper and 2013; Innocenti et al. 1981; Kirchenbaur et al. 2012; Nicholls 1971; Pe-Piper and Piper 1994). Overall, our results are consistent with the data of previous studies, but cover a larger range of ­SiO2 especially at low ­SiO2 contents. Magmas from Lesbos and Samothraki have a larger range of ­SiO2 (50 to 72 wt.%) than rocks from Lim- nos, but follow the same trends. The shoshonitic rocks and monzonites exhibit slightly lower ­Al2O3 and higher ­P2O5 contents than the high-K calc-alkaline samples, while all other major element contents show no major differences between the two series. 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 9 of 20  73 of 20  73 Fig. 4   Multi-element diagram normalized to MORB (Sun and McDonough 1989). The trace elements are sorted by incom- patibility in descending order. Zr contents have been deter- mined by XRF, all others by ICP-MS. The range of magmas from Lesbos (Pe-Piper et al. 2014) and Samothraki (Vlahou et al. Major element composition 2006) is shown in grey 0.01 0.10 1.00 10.00 100.00 1000.00 10000.00 Cs Rb Ba Th U K Nb Ta La Ce Pb Pr Sr Nd Sample/N-MORB 0.01 0.10 1.00 10.00 100.00 1000.00 10000.00 Cs Rb Ba Th U K Nb Ta La Ce Pb Pr Sr Nd Zr Sm Eu Ti Y Yb N / elp m a S - B R O M Lesbos and Samothraki Limnos: HKCA Limnos: Shoshonitic Limnos: Monzonite Lu Dy Trace element composition One high-K andesite from the Romanou unit has lower Pb isotope ratios, but higher 143Nd/144Nd, while two dacites from the Myrina unit have lower 87Sr/86Sr and 207Pb/204Pb, but higher 143Nd/144Nd and 206Pb/204Pb ratios (Fig. 6). Fractional crystallization processes affecting the Limnos magmas Variable partial melting of crus- tal rocks and mixing with mantle-derived magmas would have caused significant changes in composition between andesites and dacites (e.g. Deschamps et al., 2017). The geothermometric calculations indicate that the samples record a large temperature range between 1130° and 700 °C (Fig. 2, Table 1) in agreement with conditions for extensive fractionation. The decrease in CaO and MgO with ­SiO2 can be attributed to the fractionation of clinopyroxene, spinel and olivine at temperatures above 1000 °C and pressures of at least 0.5 GPa. Normal zoning patterns of plagioclase ranging from An54 to An20 in andesitic to dacitic lavas also reflect decreasing CaO contents during fractional crystal- lization. However, some of the variation of the bulk rock and mineral compositions may be due to magma mixing of closely related melts, which can also explain the abun- dance of subhedral plagioclase. The constant ­Al2O3, Sr and Eu contents with increasing ­SiO2 indicate that plagioclase c d e 0 2 50 55 60 65 70 75 0 50 50 55 60 65 70 75 0.0 0.4 0.8 1.2 1.6 2.0 2.4 50 55 60 65 70 75 Th/Nd 0.00 0.05 0.10 0.15 0.20 50 55 60 65 70 75 Nb/Zr 0.702 0.704 0.706 0.708 0.710 0.712 50 55 60 65 70 75 (87Sr/86Sr)i SiO2 (wt.%) 18.4 18.5 18.6 18.7 18.8 18.9 19.0 50 55 60 65 70 75 (206Pb/204Pb)i SiO2 (wt.%) f Fig. 5   (a–d) Incompatible element ratios vs. ­SiO2. Nb/Zr ratios have been calculated using the Zr concentrations determined by XRF. (e,f) Initial 87Sr/86Sr and 206Pb/204Pb isotope ratios vs. ­SiO2. Compara- tive data sets as in Fig. 3 with additional data sets from the Rhodope (Marchev et al. 2004) and Maronia-Leptokaria (Perkins et al. 2018; Schaarschmidt et al. 2021b) Fig. 5   (a–d) Incompatible element ratios vs. ­SiO2. Nb/Zr ratios have been calculated using the Zr concentrations determined by XRF. (e,f) Initial 87Sr/86Sr and 206Pb/204Pb isotope ratios vs. ­SiO2. Compara- tive data sets as in Fig. 3 with additional data sets from the Rhodope (Marchev et al. 2004) and Maronia-Leptokaria (Perkins et al. 2018; Schaarschmidt et al. 2021b) and olivine at temperatures above 1000 °C and pressures of at least 0.5 GPa. Normal zoning patterns of plagioclase ranging from An54 to An20 in andesitic to dacitic lavas also reflect decreasing CaO contents during fractional crystal- lization. Fractional crystallization processes affecting the Limnos magmas The compositional trends of the magmatic rocks of Limnos resemble those of the SAVA lavas (Fig. 3) and probably reflect fractional crystallization, which has been suggested previously (Innocenti et al. 1994; Pe-Piper et al. 2009). The andesitic and dacitic rocks have similar radiogenic isotope and Nb/Zr ratios implying that they have closely 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 10 of 20 73  Page 10 of 20 73  Page 1 a c d e 0 2 4 6 8 10 50 55 60 65 70 75 (La/Sm)N 0 50 100 150 200 250 50 55 60 65 70 75 Ba/Th Rhodope Maronia-Leptokaria Limnos (this study; publ.) HKCA Shoshonitic Monzonite Aegean magmas (publ.) Samothraki Lesbos SAVA b 0.0 0.4 0.8 1.2 1.6 2.0 2.4 50 55 60 65 70 75 Th/Nd 0.00 0.05 0.10 0.15 0.20 50 55 60 65 70 75 Nb/Zr 0.702 0.704 0.706 0.708 0.710 0.712 50 55 60 65 70 75 (87Sr/86Sr)i SiO2 (wt.%) 18.4 18.5 18.6 18.7 18.8 18.9 19.0 50 55 60 65 70 75 (206Pb/204Pb)i SiO2 (wt.%) f ed sources (Fig. 5d–f). Variable partial melting of crus- ocks and mixing with mantle-derived magmas would caused significant changes in composition between and olivine at temperatures above 1000 °C and pres of at least 0.5 GPa. Normal zoning patterns of plagio ranging from An54 to An20 in andesitic to dacitic lavas a c d e 0 2 4 6 8 10 50 55 60 65 70 75 (La/Sm)N 0 50 100 150 200 250 50 55 60 65 70 75 Ba/Th Rhodope Maronia-Leptokaria Limnos (this study; publ.) HKCA Shoshonitic Monzonite Aegean magmas (publ.) Samothraki Lesbos SAVA b 0.0 0.4 0.8 1.2 1.6 2.0 2.4 50 55 60 65 70 75 Th/Nd 0.00 0.05 0.10 0.15 0.20 50 55 60 65 70 75 Nb/Zr 0.702 0.704 0.706 0.708 0.710 0.712 50 55 60 65 70 75 (87Sr/86Sr)i SiO2 (wt.%) 18.4 18.5 18.6 18.7 18.8 18.9 19.0 50 55 60 65 70 75 (206Pb/204Pb)i SiO2 (wt.%) f  (a–d) Incompatible element ratios vs. ­SiO2. Nb/Zr ratios have calculated using the Zr concentrations determined by XRF. (e,f) l 87Sr/86Sr and 206Pb/204Pb isotope ratios vs. ­SiO2. Compara- tive data sets as in Fig. 3 with additional data sets from the Rh (Marchev et al. 2004) and Maronia-Leptokaria (Perkins et al. Schaarschmidt et al. 2021b) related sources (Fig. 5d–f). Fractional crystallization processes affecting the Limnos magmas 2005) 1% 3% 2% 1% 3% 2% 0.5120 0.5124 0.5128 0.5132 0.702 0.704 0.706 0.708 0.710 0.712 (143Nd/144Nd)i (87Sr/86Sr)i DMM IOS 2 IOS 3 a 2 1% 2% 3% 5% 10% 0.5120 0.5124 0.5128 0.5132 18.2 18.4 18.6 18.8 19.0 19.2 (143Nd/144Nd)i (206Pb/204Pb)i DMM IOS 3 ? b b ( Sr/ Sr)i 0.5% 1% 2% 15.60 15.64 15.68 15.72 15.76 18.2 18.4 18.6 18.8 19.0 19.2 (207Pb/204Pb)i (206Pb/204Pb)i IOS 3 c (208Pb/204Pb) ~20 Ma ? HKCA Limnos (this study; publ.) Shoshonitic Monzonite Rhodope Aegean magmas (publ.) Aegean basement (publ.) Maronia-Leptokaria Samothraki Lesbos SAVA E. Rhodope gneiss Serbo-Macedonian m. Ios gneiss Cycladic m. Nile fan sediments d ( )i 0.5% 1% 2% 5% 38.4 38.6 38.8 39.0 39.2 39.4 18.2 18.4 18.6 18.8 19.0 19.2 (208Pb/204Pb)i (206Pb/204Pb)i IOS 3 d Fig. 6   (a–d) Initial radiogenic isotope ratios of Sr, Nd and Pb. For comparison, literature data of Limnos (Pe-Piper et al. 2009), Aegean basement rocks (Eastern Rhodope gneisses: Bonev et al. 2010; Serbo- Macedonian metamafics: Bonev et al. 2012 and Frei 1995; Cycladic metamafics: Stouraiti et al. 2017), Aegean magmas (Lesbos: Pe-Piper et al. 2014; Maronia: Schaarschmidt et al. 2021b; Rhodope: Marchev et  al. 2004; Samothraki: Vlahou et  al. 2006; SAVA: Bailey et  al. 2009, Büttner et al. 2005, Elburg et al. 2018, Elburg and Smet 2020, Pe-Piper and Piper 1994) and Nile fan sediments (Klaver et al. 2015) are shown. Initial isotope ratios for basement samples were calcu- lated for an age of 20 Ma. Mixing lines are shown between depleted MORB mantle (DMM: Workman and Hart 2005) and Ios gneiss (Büttner et al. 2005) crystallization and fractionation of olivine, clinopyroxene, amphibole, biotite, apatite and magnetite/ilmenite, whereas plagioclase fractionation is not observed during the early magma evolution. Mixing between related magmas within the two different magmatic series may have also contributed to the observed variation. is not continuously fractionating from the melts probably due to high water contents which suppresses the crystal- lization of plagioclase during the early stage of fractiona- tion (Almeev et al. 2012). Amphibole fractionation is indi- cated by decreasing FeO, MgO, Sc and Y concentrations. Ratios of light REE and middle/heavy REE also correlate positively with the ­SiO2 content (Fig. 5a), which can be explained by fractional crystallization of amphibole and/or clinopyroxene. Fractional crystallization processes affecting the Limnos magmas However, some of the variation of the bulk rock and mineral compositions may be due to magma mixing of closely related melts, which can also explain the abun- dance of subhedral plagioclase. The constant ­Al2O3, Sr and Eu contents with increasing ­SiO2 indicate that plagioclase related sources (Fig. 5d–f). Variable partial melting of crus- tal rocks and mixing with mantle-derived magmas would have caused significant changes in composition between andesites and dacites (e.g. Deschamps et al., 2017). The geothermometric calculations indicate that the samples record a large temperature range between 1130° and 700 °C (Fig. 2, Table 1) in agreement with conditions for extensive fractionation. The decrease in CaO and MgO with ­SiO2 can be attributed to the fractionation of clinopyroxene, spinel 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 11 of 20  73 HKCA Limnos (this study; publ.) Shoshonitic Monzonite Rhodope Aegean magmas (publ.) Aegean basement (publ.) Maronia-Leptokaria Samothraki Lesbos SAVA E. Rhodope gneiss Serbo-Macedonian m. Ios gneiss Cycladic m. Nile fan sediments d 1% 3% 2% 1% 3% 2% 0.5120 0.5124 0.5128 0.5132 0.702 0.704 0.706 0.708 0.710 0.712 (143Nd/144Nd)i (87Sr/86Sr)i DMM IOS 2 IOS 3 a 1% 2% 3% 5% 10% 0.5120 0.5124 0.5128 0.5132 18.2 18.4 18.6 18.8 19.0 19.2 (143Nd/144Nd)i (206Pb/204Pb)i DMM IOS 3 ? b 0.5% 1% 2% 15.60 15.64 15.68 15.72 15.76 18.2 18.4 18.6 18.8 19.0 19.2 (207Pb/204Pb)i (206Pb/204Pb)i IOS 3 c 0.5% 1% 2% 5% 38.4 38.6 38.8 39.0 39.2 39.4 18.2 18.4 18.6 18.8 19.0 19.2 (208Pb/204Pb)i (206Pb/204Pb)i IOS 3 ~20 Ma ? Fig. 6   (a–d) Initial radiogenic isotope ratios of Sr, Nd and Pb. For comparison, literature data of Limnos (Pe-Piper et al. 2009), Aegean basement rocks (Eastern Rhodope gneisses: Bonev et al. 2010; Serbo- Macedonian metamafics: Bonev et al. 2012 and Frei 1995; Cycladic metamafics: Stouraiti et al. 2017), Aegean magmas (Lesbos: Pe-Piper et al. 2014; Maronia: Schaarschmidt et al. 2021b; Rhodope: Marchev et  al. 2004; Samothraki: Vlahou et  al. 2006; SAVA: Bailey et  al. 2009, Büttner et al. 2005, Elburg et al. 2018, Elburg and Smet 2020, Pe-Piper and Piper 1994) and Nile fan sediments (Klaver et al. 2015) are shown. Initial isotope ratios for basement samples were calcu- lated for an age of 20 Ma. Mixing lines are shown between depleted MORB mantle (DMM: Workman and Hart 2005) and Ios gneiss (Büttner et al. Fractional crystallization processes affecting the Limnos magmas Addition- ally, the monzonites and many of the shoshonitic rocks have lower Ba/Th and higher Th/Nd and Nb/Yb compared to the high-K lavas (Fig. 5b,c) which implies different parental magmas for the magma series. High Th/Nd and Th/La ratios in magmatic rocks are often attributed to sediment subduc- tion (Plank 1993, 2005), but the increasing Th/Nd and (La/ Sm)N probably reflect the fractionation of amphibole which has very low Th/Nd < 0.1 and low (La/Sm)N < 1 (Tiepolo et al. 2000; Schönhofen et al. 2020). An increasing Th/Nd by fractional crystallization is also in agreement with the constant 143Nd/144Nd (Fig. 5c), whereas assimilation would lead to changing Nd isotope ratios. We conclude that the shoshonitic and the high-K calc-alkaline rocks on Limnos have different parental magmas causing different crystal fractionation processes and liquid lines of descent. Origin of the Limnos parental melts All magmatic rocks of Limnos are characterized by high Cs, Rb and Ba, while Nb and Ta show negative anomalies com- pared to N-MORB (Fig. 4), which is typical for a magma source that has been enriched by subduction components, for example, represented by lavas of the Aegean arc (Inno- centi et al. (1994); Pe-Piper et al. (2009). The high Mg# (100*Mg/(Mg + Fe) > 60) in the basaltic andesites, the high Mg and Cr contents (Pe-Piper et al. 2009) and calculated eruption temperatures > 1100 °C, as well as the high water contents of ~ 5 wt.% in the lavas (Table 1) suggest a hydrous mantle origin of the parental melts (e.g. Arnaud et al. 1992). The enrichment of the mantle beneath Limnos causing high ratios of (La/Sm)N (> 4.5), Ba/Th (< 100), Th/Nb (~ 2.4), and 87Sr/86Sr require an influence of subducted sediments (Global Subducting Sediment: e.g. La/Sm ~ 5.0, Plank and Langmuir 1998) rather than fluids released from altered oceanic crust (Ba/Th ~ 600 to 2300 (< 1000 °C), Carter et al. 2015; Elliott 2003). Due to the complex history of the Aegean subduction system, it is challenging to identify the subducted units that affected the Limnos magmas at their time of formation. The magmatic activity on Limnos at 21 to 18 Ma (Pe-Piper et al. 2009) directly follows the partial accretion and subduction of the Apulian continental block after the closure of the Pindos ocean, as recorded by high- P metamorphic ages of 25 to 20 Ma for metamorphosed units of the Tripolitza and Ionian Blocks (Ring and Layer 2003; Ring et al. 2010). The isotope composition of northern Aegean magmatic rocks shows a shift from high 143Nd/144Nd and 206Pb/204Pb ratios (18.7 to 18.8) for ~ 30 Ma old mag- mas at Maronia-Leptokaria and in the Rhodope massif to lower 143Nd/144Nd and 206Pb/204Pb (18.5. to 18.6), but higher 207Pb/204Pb and 208Pb/204Pb ratios for the ~ 20 Ma old mag- mas at Limnos and Lesbos (Fig. 6c, dark arrow). We suggest that this variation of the Nd and Pb isotopes reflects the change from subduction of the Pindos oceanic crust overlain by pelagic or flysch sediments to subduction of the Apulian continental crust with Variscan basement overlain by Mes- ozoic–Cenozoic limestones, evaporites, pelagic sediments and flysch sediments (Sotiropoulos et al. 2003; Jolivet and Fractional crystallization processes affecting the Limnos magmas Fe-Ti oxide fractionation causes continuously decreasing FeO and ­TiO2 contents which is in accordance with the relatively oxidizing conditions (FMQ + 2) calcu- lated for magnetite-ilmenite pairs and amphiboles at ~ 900 to 730 °C. Apatite fractionation is reflected by decreasing ­P2O5 contents with increasing silica. Thus, the variation of major elements of the Limnos magmatic rocks is due to the Innocenti et al. (1994) suggested that the variations in ­K2O and other incompatible elements between high-K and shoshonitic lavas at Limnos reflect crystal fractiona- tion processes at varying crustal depths from one parental magma. According to this model, fractionation of olivine, pyroxene, plagioclase, and magnetite at high pressures led to the formation of shoshonitic magmas, whereas fractionation of plagioclase, clinopyroxene, and magnetite at low pres- sures generated high-K melts. Geobarometric calculations 1 3 1 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 12 of 20 73  Page 12 of 20 73 (e.g. Büttner et al. 2005; Stouraiti et al. 2010; Bonev et al. 2012). Additionally, the Th/Nd and (La/Sm)N of the Lim- nos samples are also constant with variable ­SiO2 (Fig. 5c,d), but much higher than MORB (e.g. Th/Nd > 0.4 compared to 0.02 in N-MORB, Hofmann 1988), suggesting the contribu- tion of partial melts from sediments to the primitive mag- mas. We conclude that the Limnos magmas are affected by a partial melt from a sedimentary end-member rather than by one from an amphibolitic source, but that this sediment component caused enrichment of the Limnos parental melts in the mantle rather than in the crust. for clinopyroxene of the shoshonitic sample LIM-42 gave crystallization pressures of ~ 0.5 GPa which is similar to the pressures of the high-K samples (0.2 to 0.5 GPa for amphi- bole) and corresponds to a maximum crystallization depth of 18 km. The shoshonitic monzonite sample LIM-14 yields lower pressures of ~ 0.2 GPa for clinopyroxene and < 0.1 GPa for amphibole, which corresponds to a crystalliza- tion depth of ~ 5 km and an intrusion depth of ~ 2 km (Cas and Simmons 2018). Hence, these results do not support a model of systematically different pressures of crystalliza- tion for shoshonitic and high-K magmas. Rather, the lavas show variable pressures probably reflecting different magma stagnation levels and the monzonite represents a shoshonitic magma batch that crystallized in the upper crust. Potential crustal assimilation in the Limnos magmas Thus, we suggest that the Ios gneiss represents a suitable end-member for the metasediments of the Apulian block that were subducted and caused the partial melting of the Limnos magmas in the mantle. 1 3 b c 0 500 1000 1500 2000 2500 3000 18.2 18.4 18.6 18.8 19.0 19.2 K/La IOS 3 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 18.2 18.4 18.6 18.8 19.0 19.2 Rb/Ba IOS 3 0.0 0.2 0.4 0.6 0.8 1.0 18.2 18.4 18.6 18.8 19.0 19.2 Nb/La (206Pb/204Pb)i IOS 3 HKCA Limnos (this study) Shoshonitic Monzonite Rhodope Aegean magmas (publ.) Aegean basement (publ.) Maronia-Leptokaria Lesbos SAVA Ios gneiss Cycladic metamafics Nile fan sediments a Fig. 7   (a–c) Initial 206Pb/204Pb isotope ratios vs. trace element ratios. Trends within the Limnos magmas show decreasing 206Pb/204Pb cor- relating with decreasing K/La, Rb/Ba and Nb/La ratios. Data sets of Aegean magmas (as in Fig. 5), Cycladic basement rocks (Büttner et al. 2005; Stouraiti et al. 2017) and Nile fan sediments (Klaver et al. 2015) are shown for comparison The Pb isotopes of Limnos rocks as well as those from Lesbos and Maronia-Leptokaria trend towards low 206Pb/204Pb ratios (Fig. 6c, small arrows). Decreasing 206Pb/204Pb ratios correlate with decreasing K/La, Rb/Ba, Nb/La (Fig. 7a–c) and P/Nd ratios within the Limnos sam- ples. Especially the younger high-K lavas of the Myrina and northern Katalakon units show lower Rb and Nb concentra- tions and low 206Pb/204Pb ratios. The decreasing Nb/La ratios (Fig. 7c) and Nb concentrations at decreasing 206Pb/204Pb ratios exclude the influence of an enriched mantle compo- nent. It rather points towards a crustal component with low Rb, Th, K, Zr, and Nb concentrations (Fig. 7) that affected the source of the high-K Limnos magmas. Unradiogenic Pb and Hf isotopes have been observed for coarse-grained sediments at the African shelf (Klaver et al. 2015) or in the forearc of the Lesser Antilles (Carpentier et al. 2009) due to higher portions of detrital zircon. The Quaternary Nile fan sediments from the African shelf (Klaver et al. 2015) have lower K/La ratios (~ 130), LILE and LREE contents than the Limnos magmas (K/La ~ 500), which could explain some but not all of the decreasing element concentrations (Fig. 7). Nb/La Fig. 7   (a–c) Initial 206Pb/204Pb isotope ratios vs. trace element ratios. Trends within the Limnos magmas show decreasing 206Pb/204Pb cor- relating with decreasing K/La, Rb/Ba and Nb/La ratios. Potential crustal assimilation in the Limnos magmas The formation of shoshonitic magmas was suggested to be due to assimilation processes within the crust (e.g. Feeley and Cosca 2003), or to re-melting of lower crustal metaba- salts by ascending basanitic magmas (Pe-Piper et al. 2009). We do not observe metamorphic xenoliths that would record assimilation of crustal rocks during the magma ascent. Metabasaltic rocks of the Cyclades, e.g. Samos, Paros and Naxos (Stouraiti et al. 2017), have too low Sr and Pb and too high Nd isotope ratios in order to be possible contami- nants of the Limnos magmas. The metamorphic units of the Serbo-Macedonian massif have too high 143Nd/144Nd and 206Pb/204Pb (Bonev et al. 2012; Frei 1995) to represent a possible mixing end-member for the Limnos lavas (Fig. 6b). However, a sedimentary component is required to achieve the high incompatible element concentrations, the high Th/ Nd and (La/Sm)N, and high Pb-isotope ratios in the Limnos lavas (Spandler et al. 2007; Campbell et al. 2014). The con- stant Sr, Nd and Pb isotope ratios of the majority of Limnos rocks, including those with LOI > 5%, with increasing ­SiO2 contents (Fig. 5e,f) do not indicate assimilation of conti- nental crustal material which typically has 87Sr/86Sr > 0.710 3 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 13 of 20  73 Page 13 of 20  73 73 Brun 2010). Triassic to Oligocene limestones and evapo- rites have 87Sr/86Sr between 0.7068 and 0.7080 (e.g. Burke et al. 1982) and thus cannot cause the initial 87Sr/86Sr up to 0.7094 of the Limnos magmas. Therefore, we suggest that clastic sediments, such as arkosic sandstones and pelites derived from Variscan basement (Pe-Piper et al. 2021) are a more likely end-member in the source of the Limnos mag- mas. Due to the lack of trace element and Pb isotope data of sediments of the Apulian block, we cannot prove whether these sediments caused the shift towards low 143Nd/144Nd and 206Pb/204Pb but high 207Pb/204Pb. However, published Pb isotope ratios of Cycladic basement units record low 143Nd/144Nd and 206Pb/204Pb with high 207Pb/204Pb ratios for metasedimentary gneisses from Ios (Büttner et al. 2005). Since the Ios gneiss underlies the Cycladic Blueschist Unit (Thomson et al. 2009) we speculate that it might resemble the subducted sediments of Apulia or the Variscan basement of which they were derived. Calculated mixing lines of aver- age depleted mantle (i.e. Potential crustal assimilation in the Limnos magmas DMM: depleted MORB mantle; Workman and Hart, 2005) with bulk Ios gneiss can roughly reproduce the Sr, Nd, and maximum Pb isotope ratios of the Limnos magmas (Fig. 6). The Pb isotopes require mix- ing of 1 to 2% Ios gneiss (IOS 3, Fig. 6c,d), whereas the Nd isotopes require mixing of 4 to 6% Ios gneiss (IOS 2, Büttner et al. 2005; Fig. 6b). However, the curvature of the mixing lines is also strongly affected by the Pb, Sr and Nd fractionation during the slab-to-mantle transfer, e.g. during sediment melting (e.g. Elliott 2003; Spandler et al. 2007). Thus, we suggest that the Ios gneiss represents a suitable end-member for the metasediments of the Apulian block that were subducted and caused the partial melting of the Limnos magmas in the mantle. Brun 2010). Triassic to Oligocene limestones and evapo- rites have 87Sr/86Sr between 0.7068 and 0.7080 (e.g. Burke et al. 1982) and thus cannot cause the initial 87Sr/86Sr up to 0.7094 of the Limnos magmas. Therefore, we suggest that clastic sediments, such as arkosic sandstones and pelites derived from Variscan basement (Pe-Piper et al. 2021) are a more likely end-member in the source of the Limnos mag- mas. Due to the lack of trace element and Pb isotope data of sediments of the Apulian block, we cannot prove whether these sediments caused the shift towards low 143Nd/144Nd and 206Pb/204Pb but high 207Pb/204Pb. However, published Pb isotope ratios of Cycladic basement units record low 143Nd/144Nd and 206Pb/204Pb with high 207Pb/204Pb ratios for metasedimentary gneisses from Ios (Büttner et al. 2005). Since the Ios gneiss underlies the Cycladic Blueschist Unit (Thomson et al. 2009) we speculate that it might resemble the subducted sediments of Apulia or the Variscan basement of which they were derived. Calculated mixing lines of aver- age depleted mantle (i.e. DMM: depleted MORB mantle; Workman and Hart, 2005) with bulk Ios gneiss can roughly reproduce the Sr, Nd, and maximum Pb isotope ratios of the Limnos magmas (Fig. 6). The Pb isotopes require mix- ing of 1 to 2% Ios gneiss (IOS 3, Fig. 6c,d), whereas the Nd isotopes require mixing of 4 to 6% Ios gneiss (IOS 2, Büttner et al. 2005; Fig. 6b). However, the curvature of the mixing lines is also strongly affected by the Pb, Sr and Nd fractionation during the slab-to-mantle transfer, e.g. during sediment melting (e.g. Elliott 2003; Spandler et al. 2007). Melting model for the Limnos parental melts 0.49phl + 0.56 opx + 0.47 cpx + 0.05 sp = 0.58 ol + 1.00 melt Experiments of Sekine and Wyllie (1983) simulated the reaction of granitic melt derived from sediments with man- tle peridotite under P–T conditions reached in subduction zones. Their results suggest that hybrid reaction zones form in the mantle wedge that are characterized by orthopyrox- ene- and clinopyroxene-rich veins in the absence of olivine. Garnet, quartz and phlogopite might form as well, the latter being an important supplier of potassium to partial melts (Sekine and Wyllie 1983). More recent reaction experi- ments of sediment melt and dunite confirmed the formation of phlogopite-pyroxenites and K-rich magmas under P–T conditions of a subduction zone (1 GPa, < 1000 °C; Förster et al. 2019). Geochemical characteristics of western Ana- tolian volcanics resemble those of Limnos and were inter- preted to be generated by melting of phlogopite-rich veins in subduction-metasomatized lithospheric mantle (Dilek and Altunkaynak 2010). Condamine and Médard (2014) also emphasized the importance of phlogopite for the generation of potassic magmas. The presence of residual phlogopite in the mantle is supported by low Ba/Rb, K/La, and high Rb/Sr ratios (Furman and Graham 1999) which we observe in the Limnos lavas (Fig. 7). Low CaO/Al2O3 (~ 0.29) and low con- tents of CaO (~ 4.5 wt.%) and Sc (~ 14 µg/g) in the Limnos samples can also be related to a phlogopite-bearing mantle source (Miller et al. 1999). Based on these findings we sug- gest that the source rock of the Limnos primary magmas was dominated by orthopyroxene, clinopyroxene and phlogopite. Melt contributions from surrounding peridotite can be con- sidered relatively small, because of the much lower solidus temperature of pyroxenite at pressures < 1 GPa and with lit- tle involvement of released volatiles (Lambart et al. 2016). (phl = phlogopite; opx = orthopyroxene; cpx = clinopyrox- ene; sp = spinel; ol = olivine). Since olivine is consumed during the reaction between sediment melt and peridotite, the modified melt reaction for an olivine-free phlogopite-pyroxenite would be: 0.31phl + 0.36 opx + 0.30 cpx + 0.03 sp = 1.00 melt. Small amounts of spinel (~ 1%) are negligible for the modelling due to their low distribution coefficients but have been included nevertheless as spinel is likely to occur as a minor or accessory mineral in mantle rocks at moderate pressures (~ 1 GPa). Potential crustal assimilation in the Limnos magmas Data sets of Aegean magmas (as in Fig. 5), Cycladic basement rocks (Büttner et al. 2005; Stouraiti et al. 2017) and Nile fan sediments (Klaver et al. 2015) are shown for comparison 1 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 14 of 20 73  Page 14 of 20 73 gneiss (Büttner et al. 2005) or a sediment melt derived from melting experiments of a metapelitic starting material (Her- mann and Rubatto 2009; run C-1578 at 900 °C, 3.5 GPa and 6% ­H2O added). The resulting REE compositions were used for modelling non-modal batch melting at variable degrees of melting (Fig. 8, dashed lines). The partition coefficients used for the melting model are presented in Table 2. Com- paring the REE ratios of the intermediate Limnos magmas (< 60 wt.% ­SiO2) to the modelled compositions allows us to estimate the degree of partial melting and the influence of different source rock mineralogies (Fig. 8). Therefore the K/La variation in the Limnos magmas may be explained by a mixture of clastic sediments, such as arkoses and pelites (high K/La, low 143Nd/144Nd), and more lime- stone-rich sediments (low K/La, higher 143Nd/144Nd) derived from the subducted Apulian slab. We conclude that subduc- tion of the Apulian sedimentary sequence and its interaction with the mantle wedge controlled the incompatible element composition and the Sr, Nd, and Pb isotope composition of the parental Limnos magmas. Interaction of mantle with slab-derived sediments or partial melts from the sediments generated a heterogenous source that gave rise to the high-K calc-alkaline and shoshonitic magmas. f Condamine and Médard (2014) suggested the following melt reaction for a phlogopite-lherzolite above 1075 °C: Melting model for the Limnos parental melts The REE concentrations of the Lim- nos magmas can be modelled by assuming the following composition for the hybridized mantle rock: 5% phl, 20% cpx, 74% opx, 1% sp (Fig. 8a). According to this model, the samples of Limnos require about 5 to 10% partial melt- ing after mixing of DMM with either 10 to 20% of bulk Ios gneiss (Fig. 8a) or 2 to 5% of experimental sediment melt (Fig. 8b). The melting behaviour of this phlogopite- pyroxenite is compared to other typical mantle lithologies in Fig. 8b–d. Melting of spinel peridotite (Fig. 8c) shows similar melting curves to the phlogopite pyroxenite (Fig. 8a) but requires pretty low melting degrees < 4%. A garnet peri- dotite source may provide suitable Sm/Yb ratios even at low amounts of sedimentary material in the mixture (< 5%) but fails to reproduce the high La/Sm ratios of the Limnos mag- mas (Fig. 8d). We conclude that the REE contents of Limnos can be explained by 5 to 10% partial melting of a pyroxenite containing 5% phlogopite. Most of the intermediate shoshonitic magmas of Limnos (< 60 wt.% ­SiO2) differ from the high-K samples in hav- ing slightly higher middle REE concentrations and Sm/Yb ratios. A higher amount of sedimentary material could lead to a higher amount of phlogopite involved during partial melting, which at the same time increased the K content in the melt. Higher Nb/Yb, Th/Nd, Sm/Yb ratios and higher concentrations of Cs, Rb, Zr and U in most of the shosho- nitic compared to the high-K magmas (Fig. 5) indicate that both, a variable input of sedimentary material and variable We use REE modelling to test a potential melting regime of the Limnos magmas by comparing variable mixing end- members and source mineralogies (Fig. 8). The composi- tion of the hybridized mantle source for the melt modelling was determined by mixing DMM (Workman and Hart 2005) with up to 20% of sedimentary material (Fig. 8, solid lines). Melting model for the Limnos parental melts (d) Garnet peridotite: DMM- sediment melt mixture 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (Sm/Yb)N Phl-pyroxenite: 5% phl, 20% cpx, 74% opx, 1% sp 0.31phl + 0.30cpx + 0.36opx + 0.03sp = 1.00melt DMM Ios 10% 5% 5% Ios 10% Ios 20% Ios a 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 Phl-pyroxenite: 5% phl, 20% cpx, 74% opx, 1% sp 0.31phl + 0.30cpx + 0.36opx + 0.03sp = 1.00melt DMM SM 10% 5% 10% SM 5% SM 2% SM b 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (Sm/Yb)N (La/Sm)N Sp-peridotite: 3% sp, 12% cpx, 27% opx, 58% ol 0.13sp + 0.5cpx + 0.27opx + 0.10ol = 1.00melt SM 5% SM 10% SM 2% SM DMM 10% 5% 3% c 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (La/Sm)N Gt-peridotite: 5% gt, 10% cpx, 30% opx, 55% ol 0.50gt + 0.40cpx + 0.05opx + 0.05ol = 1.00melt DMM SM 5% SM 0.5% SM 5% 10% 1% SM d Rhodope Maronia-Leptokaria Limnos (this study; publ.) HKCA Shoshonitic Monzonite Aegean magmas (publ.) Samothraki Lesbos SAVA d Fig. 8   Chondrite normalized La/Sm vs. Sm/Yb ratios for Limnos and Aegean magmas with ­SiO2 < 60 wt.%. For references see Fig. 5. Melting curves are shown for different potential source rock mixtures of depleted MORB mantle (DMM, Workman and Hart 2005) and a crustal slab component (Ios gneiss or sediment melt (SM), bold lines) at variable partial melting degrees (dashed lines). The modal amounts of the minerals in the source and involved in the melting is given in the box. Abbr.: phl = phlogopite, cpx = clinopyroxene, opx = orthopy- roxene, sp = spinel, gt = garnet, ol = olivine (a) Phlogopite pyroxenite: DMM-Ios gneiss mixture; melt reaction modified after Condamine and Médard (2014). (b) Phlogopite pyroxenite: DMM-sediment melt mixture. (c) Spinel peridotite: DMM-sediment melt mixture; melt reaction after Thirlwall et  al. (1994). (d) Garnet peridotite: DMM- sediment melt mixture Myrina (Pe-Piper et al. 2009). Whereas the previous melting model of the Limnos magmas assumed a source of metaba- saltic amphibolite (Pe-Piper et al. (2009), our new model suggests a pyroxenitic source that can explain the high Sr/Y and Sr concentrations in Limnos samples (~ 1000 µg/g), i.e. Melting model for the Limnos parental melts partial melting of a plagioclase-free source (Castillo 2012). This new model is in agreement with the massive subduction of sedimentary material at the time of magmatic activity on Limnos. Myrina (Pe-Piper et al. 2009). Whereas the previous melting model of the Limnos magmas assumed a source of metaba- saltic amphibolite (Pe-Piper et al. (2009), our new model suggests a pyroxenitic source that can explain the high Sr/Y and Sr concentrations in Limnos samples (~ 1000 µg/g), i.e. partial melting of a plagioclase-free source (Castillo 2012). This new model is in agreement with the massive subduction of sedimentary material at the time of magmatic activity on Limnos. melting degrees controlled the formation of shoshonitic vs. high-K magmas. This is in accordance with models from the Maronia-Leptokaria high-K calc-alkaline to shoshonitic rocks where it is believed that variable source enrichment by subducted sediments caused lower water contents and lower degrees of melting at higher temperatures for shoshonitic relative to high-K calc-alkaline magmas (Perkins et al. 2018; Schaarschmidt et al. 2021b). This agrees with lower water contents estimated in the Limnos shoshonitic compared to the high-K lavas (Table 1). Yet, in contrast to the Maro- nia–Leptokaria magmas, magmatism at Limnos evolves with time from dominantly shoshonitic magmatism at south- ern Katalakon and Romanou (22.3 ± 0.7 Ma) to younger (21–18 Ma) high-K magmatism at northern Katalakon and Melting model for the Limnos parental melts As sedimentary mixing endmember we use either bulk Ios 3 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 15 of 20  73 Page 15 of 20  73 73 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 15 of 20  73 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (Sm/Yb)N Phl-pyroxenite: 5% phl, 20% cpx, 74% opx, 1% sp 0.31phl + 0.30cpx + 0.36opx + 0.03sp = 1.00melt DMM Ios 10% 5% 5% Ios 10% Ios 20% Ios a 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 Phl-pyroxenite: 5% phl, 20% cpx, 74% opx, 1% sp 0.31phl + 0.30cpx + 0.36opx + 0.03sp = 1.00melt DMM SM 10% 5% 10% SM 5% SM 2% SM b 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (Sm/Yb)N (La/Sm)N Sp-peridotite: 3% sp, 12% cpx, 27% opx, 58% ol 0.13sp + 0.5cpx + 0.27opx + 0.10ol = 1.00melt SM 5% SM 10% SM 2% SM DMM 10% 5% 3% c 0 2 4 6 8 10 12 0 2 4 6 8 10 12 14 (La/Sm)N Gt-peridotite: 5% gt, 10% cpx, 30% opx, 55% ol 0.50gt + 0.40cpx + 0.05opx + 0.05ol = 1.00melt DMM SM 5% SM 0.5% SM 5% 10% 1% SM d Rhodope Maronia-Leptokaria Limnos (this study; publ.) HKCA Shoshonitic Monzonite Aegean magmas (publ.) Samothraki Lesbos SAVA Fig. 8   Chondrite normalized La/Sm vs. Sm/Yb ratios for Limnos and Aegean magmas with ­SiO2 < 60 wt.%. For references see Fig. 5. Melting curves are shown for different potential source rock mixtures of depleted MORB mantle (DMM, Workman and Hart 2005) and a crustal slab component (Ios gneiss or sediment melt (SM), bold lines) at variable partial melting degrees (dashed lines). The modal amounts of the minerals in the source and involved in the melting is given in the box. Abbr.: phl = phlogopite, cpx = clinopyroxene, opx = orthopy- roxene, sp = spinel, gt = garnet, ol = olivine (a) Phlogopite pyroxenite: DMM-Ios gneiss mixture; melt reaction modified after Condamine and Médard (2014). (b) Phlogopite pyroxenite: DMM-sediment melt mixture. (c) Spinel peridotite: DMM-sediment melt mixture; melt reaction after Thirlwall et  al. (1994). Tectonic framework of the Limnos magmatic system Limnos largely consists of Eocene to Oli- gocene clastic flysch sediments representing deposits of an accretionary wedge in the fore-arc region of the Oligocene magmatic arc situated in the Rhodopes (Görür and Okay 1996; Maravelis et al. 2016). The Limnos volcanic rocks largely rest on marine clastic sediments of the Late Oligo- cene to Early Miocene Ifestia Unit that show an erosional top and are overlain by the continental Therma Unit implying rapid uplift (Innocenti et al. 2009). An interpretation of the fault systems on Limnos indicates that this uplift is prob- ably due to Middle Oligocene to Early Miocene collision between Apulia and Eurasia (Innocenti et al. 1994; Tranos 2009). Thus, the setting of the Limnos magmatic activity in the Oligocene closely resembled that of the presently active SAVA with rapid vertical movements due to changes in the dynamics of the fore-arc and arc region of the migrating subduction zone. Tectonic reconstructions also suggest that the active volcanic arc was close to the Limnos region 23 million years ago (Faccenna et al. 2014). Seismic data show an unusually thick lithosphere of possibly 150 km beneath the northern Aegean (Sodoudi et al. 2006), i.e. there is no indication of asthenospheric upwelling and lithospheric thin- ning beneath Limnos. Furthermore, the isotopic and trace element composition of the Limnos magmas reveals melting of a heterogeneous, hydrous mantle source that was affected by slab-derived crustal components. We conclude that the magmatism of Limnos reflects partial melting above the sub- ducting slab and its southward-directed rollback that caused migration of the magmatic activity (Innocenti et al. 1994; Schaarschmidt et al. 2021a). Tectonic framework of the Limnos magmatic system The formation of the Miocene Limnos magmas has been related on one hand to the subduction at the southwards 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 16 of 20 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 16 of 20 Table 2   Selected partition coefficients for clinopyroxene (cpx), orthopyroxene (opx), olivine (ol), garnet (gt) and spinel (sp) used for the modelling of equilibrium melting a McDade et al. (2003a) b Fujimaki et al. (1984) c Stracke et al. (2003) d McDade et al. (2003b) e Johnson (1998) Dcpx Dopx Dol Dphl Dgt Dsp Phl-pyroxenite La 0.043a 0.003a – 0.0413b – 0.0006c Sm 0.363a 0.021a – 0.0255b – 0.001c Yb 0.543a 0.164a – 0.0484b – 0.0045c Gt-peridotite La 0.043a 0.003a 0.0000082d – 0.001e – Sm 0.363a 0.021a 0.00086d – 0.25e – Yb 0.543a 0.164a 0.036d – 6.6e – Sp-peridotite La 0.071d 0.0008d 0.0000082d – – 0.0006c Sm 0.459d 0.0251d 0.00032d – – 0.001c Yb 0.76d 0.168d 0.0096d – – 0.0045c migrating Aegean volcanic arc (Innocenti et al. 1994), and on the other hand to post-orogenic slab detachment and asthenospheric upwelling (Pe-Piper et al. 2009). Thus, the tectonic situation of the Limnos region at the time of mag- matic activity needs to be considered to understand the cause of partial melting. Limnos largely consists of Eocene to Oli- gocene clastic flysch sediments representing deposits of an accretionary wedge in the fore-arc region of the Oligocene magmatic arc situated in the Rhodopes (Görür and Okay 1996; Maravelis et al. 2016). The Limnos volcanic rocks largely rest on marine clastic sediments of the Late Oligo- cene to Early Miocene Ifestia Unit that show an erosional top and are overlain by the continental Therma Unit implying rapid uplift (Innocenti et al. 2009). An interpretation of the fault systems on Limnos indicates that this uplift is prob- ably due to Middle Oligocene to Early Miocene collision between Apulia and Eurasia (Innocenti et al. 1994; Tranos 2009). Thus, the setting of the Limnos magmatic activity in the Oligocene closely resembled that of the presently active SAVA with rapid vertical movements due to changes in the dynamics of the fore-arc and arc region of the migrating subduction zone. Tectonic reconstructions also suggest that the active volcanic arc was close to the Limnos region 23 million years ago (Faccenna et al. 2014). Tectonic framework of the Limnos magmatic system Seismic data show an unusually thick lithosphere of possibly 150 km beneath the northern Aegean (Sodoudi et al. 2006), i.e. there is no indication of asthenospheric upwelling and lithospheric thin- ning beneath Limnos. Furthermore, the isotopic and trace element composition of the Limnos magmas reveals melting of a heterogeneous, hydrous mantle source that was affected by slab-derived crustal components. We conclude that the magmatism of Limnos reflects partial melting above the sub- ducting slab and its southward-directed rollback that caused migration of the magmatic activity (Innocenti et al. 1994; Schaarschmidt et al. 2021a). The tectonic models of the Aegean subduction zone sug- gest accretion and partial subduction of continental blocks belonging to the Apulian block during Oligocene and a change to subduction of the oceanic lithosphere of the east- ern Mediterranean ~ 23 Ma ago (Ring et al. 2010; Jolivet et al. 2013). Thus, at the time of magma formation beneath Limnos between 22 and 18 Ma, significant volumes of con- tinental crustal material of the Apulia block were already subducted and have likely affected the mantle wedge caus- ing the extreme isotopic compositions of Upper Miocene Aegean magmas. The processes at the Oligocene–Miocene North Aegean arc may have resembled those occurring at the Banda Arc where parts of the Australian continental lithosphere are subducted causing extreme element enrich- ments in arc magmas (e.g. Elburg et al. 2005), whereas other lithospheric parts are accreted (Harris 2011). Additionally, the subduction of the continental lithospheric blocks causes uplift in the Banda Arc (Harris 2011) which is consistent with the uplift observed in the sediment succession of Lim- nos prior to and during the magmatic activity (Innocenti et al. 1994). We conclude that the magmatic and tectonic evolution of Limnos can be explained by the subduction of continental material of the Apulian block and we present the first comprehensive model for the geologic processes in this part of the northern Aegean. migrating Aegean volcanic arc (Innocenti et al. 1994), and on the other hand to post-orogenic slab detachment and asthenospheric upwelling (Pe-Piper et al. 2009). Thus, the tectonic situation of the Limnos region at the time of mag- matic activity needs to be considered to understand the cause of partial melting. References Aldanmaz E, Pearce JA, Thirlwall MF, Mitchell JG (2000) Petrogenetic evolution of late Cenozoic post-collision volcanism in western anatolia, Turkey. J Volcanol Geoth Res 102:67–95 anatolia, Turkey. J Volcanol Geoth Res 102:67–95 Almeev R, Holtz F, Koepke J, Parat F (2012) Experimental calibration of the effect of H2O on plagioclase crystallization in basaltic melt at 200 MPa. Am Miner 97:1234–1240i Andersen DJ, Lindsley DH (1985) New (and final) models for the Ti- magnetite/ilmenite geothermometer and oxygen barometer. Am Geophys Union 66(18):416 Armijo R, Meyer B, Hubert A, Barka A (1999) Westward propagation of the north Anatolian fault into the northern Aegean: timing and kinematics. Geology 27:267–270 Arnaud NO, Vidal P, Tapponier P, Matte P, Deng WM (1992) The high K20 volcanism of northwestern Tibet: geochemistry and tectonic implications. Earth Planet Sci Lett 111:351–367 Bailey JC, Jensen ES, Hansen A, Kann AD, Kann K (2009) Forma- tion of heterogeneous magmatic series beneath North Santorini, South Aegean island arc. Lithos 110:20–36 Behn MD, Kelemen PB, Hirth G, Hacker BR, Massonne HJ (2011) Diapirs as the source of the sediment signature in arc lavas. Nat Geosci 4:641–646 Bonev N, Moritz R, Márton I, Chiaradia M, Marchev P (2010) Geo- chemistry, tectonics and crustal evolution of basement rocks in the Eastern Rhodope Massif, Bulgaria. Int Geol Rev 52:269–297 Eastern Rhodope Massif, Bulgaria. Int Geol Rev 52:269–29 Bonev N, Dilek Y, Hanchar JM, Bogdanov K, Klain L (2012) Nd– Sr–Pb isotopic composition and mantle sources of Triassic rift units in the Serbo-Macedonian and the western Rhodope massifs (Bulgaria–Greece). Geol Mag 149(1):146–152l Supplementary Information  The online version contains supplemen- tary material available at https://​doi.​org/​10.​1007/​s00410-​022-​01940-7. Brun JP, Sokoutis D (2010) 45 my of Aegean crust and mantle flow driven by trench retreat. Geology 38(9):815–818 Acknowledgements  We thank M. Hertel for her help with the sam- ple preparation process and the XRF analysis and M. Regelous for the measurements of trace elements and isotope ratios by ICPMS and TIMS. We gratefully acknowledge the constructive reviews by G. Pe- Piper and an anonymous reviewer that considerably improved the qual- ity of this work. Brun JP, Faccenna C, Gueydan F, Sokoutis D, Philippon M, Kydonakis K, Gorini C (2016) The two-stage Aegean extension, from local- ized to distributed, a result of slab rollback acceleration. Can J Earth Sci 53(11):1142–1157 Burke WH, Denison RE, Hetherington EA, Koepnick RB, Nelson HF, Otto JB (1982) Variation of seawater 87Sr/86Sr throughout Phan- erozoic time. References Geology 10:516–519 Funding  Open Access funding enabled and organized by Projekt DEAL. Büttner A, Kleinhanns IC, Rufer D, Hunziker JC, Villa IM (2005) Magma generation at the easternmost section of the Hellenic arc: Hf, Nd, Pb and Sr isotope geochemistry of Nisyros and Yali volcanoes. Lithos 83:29–46 Conclusions The high-K calc-alkaline to shoshonitic trachyandesites and the Fakos monzonite are genetically related and underwent fractional crystallization at temperatures of 1100 to 700 °C and pressures around 0.5 to 0.1 GPa with no detectable crustal contamination. Mixing of different related magma batches can have also affected the composition of the lavas. 1 3 3 Page 17 of 20  73 of 20  73 Contributions to Mineralogy and Petrology (2022) 177: 73 The radiogenic isotope and incompatible element composi- tions of the Limnos magmatic rocks indicate the input of a continental sediment component to the depleted mantle wedge, and this component changed from that previously observed in older rocks from the northern Aegean. We sug- gest that Mesozoic–Cenozoic sediments of the Apulian block contributed to the source and controlled the trace element and isotope signature of the parental magmas, in accordance with upper Miocene ages of the high-pressure metamorphism of the respective units. This highlights the change of sedimentary input into the Aegean subduction zone between 30 and 20 million years ago. The subducted sedimentary component interacted with the mantle rock to form enriched phlogopite-pyroxenite veins at the expense of olivine. Partial melting of this phlogopite-pyroxenite source at degrees of 5 to 10% and varying sediment input into the mantle cause variations between high-K and shoshonitic rocks on Limnos. The magmatic rocks of Limnos indicate that both the melting processes in the mantle wedge and the complex variation of subducted oceanic and continen- tal units in the migrating Aegean arc caused considerable changes in magma composition. Declarations Lithos 48:237–262 p p y Condamine P, Médard E (2014) Experimental melting of phlogopite- bearing mantle at 1 GPa: implications for potassic magmatism. Earth Planet Sci Lett 397:80–92 Görür N, Okay AI (1996) A fore-arc origin for the Thrace Basin, NW Turkey. Geol Rundsch 85:662–668 Davidson JP, Hora JM, Garrson J, Dungan MA (2005) Crustal forensics in arc magmas. J Volcanol Geoth Res 140:157–170 Govindaraju K (1994) Compilation of working values and sam- ple description for 383 geostandards. Geostandard Newslett 18:1–158 Deschamps F, Duchene S, de Sigoyer J, Bosse V, Benoit M, Van- derhaege O (2017) Coeval mantle-derived and crust-derived magmas forming two neighbouring plutons in the Songpan Ganze accretionary orogenic wedge (SW China). J Petrol 58(11):2221–2256 Harris M (2011) The accretion of lower oceanic crust. Dissertation, University of Southampton Hawkesworth CJ, Gallagher K, Hergt JM, McDermott F (1993) Mantle and slab contributions in arc magmas. Ann Rev Earth Planet Sci 21:175–204 Dilek Y, Altunkynak S (2010) Geochemistry of Neogene-Quaternary alkaline volcanism in western Anatolia, Turkey, and implications for the Aegean mantle. Int Geol Rev 52:631–655 Hermann J, Rubatto D (2009) Accessory phase control on the trace element signature of sediment melts in subduction zones. Chem Geol 265:512–526f Elburg MA, Smet I (2020) Geochemistry of lavas from aegina and poros (Aegean Arc, Greece): distinguishing upper crustal con- tamination and source contamination in the Saronic Gulf area. Lithos 358–359:105416 Hofmann AW (1988) Chemical differentiation of the earth: the rela- tionship between mantle continental crust, and oceanic crust. Earth Planet Sci Lett 90:297–314 Elburg MA, van Bergen MJ, Foden JD (2004) Subducted upper and lower continental crust contributes to magmatism in the collision sector of the Sunda-Banda arc, Indonesia. Geology 32:41–44 Innocenti F, Manetti P, Peccerillo A, Poli G (1981) South Aegean vol- canic arc: geochemical variations and geotectonic implications. Bull Volcanologique 44(3):377–391 Elburg MA, Foden JD, van Bergen MJ, Zulkarnain I (2005) Australia and Indonesia in collision: geochemical sources of magmatism. J Volcanol Geoth Res 140(1–3):25–47l Innocenti F, Manetti P, Mazzuoli R, Pertusati P, Fytikas M, Kolios N (1994) The geology and geodynamic significance of the Island of Limnos, North Aegean Sea, Greece. Neues Jb Geol 11:661–691 Elburg MA, Smet I, De Pelsmaeker E (2014) Influence of source materials and fractionating assemblage on magmatism along the Aegean Arc, and implications for crustal growth. Declarations Campbell IH, Stepanov AS, Liang HY, Allen CM, Norman MD, Zhang YQ, Xie YW (2014) The origin of shoshonites: new insights from the Tertiary high-potassium intrusions of eastern Tibet. Contrib Miner Petrol 167:983 Conflict of interests  Funding of the project was provided by the Ge- oZentrum Nordbayern which is gratefully acknowledged. The authors have no relevant financial or non-financial interests to disclose. Caracciolo L, Critelli S, Innocenti F, Kolios N, Manetti P (2011) Unrav- elling provenance from Eocene-Oligocene sandstones of the Thrace Basin, North-east Greece. Sedimentology 58:1988–2011 Open Access  This article is licensed under a Creative Commons Attri- bution 4.0 International License, which permits use, sharing, adapta- tion, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. Carpentier M, Chauvel C, Maury RC, Mattielli N (2009) The “zircon effect” as recorded by the chemical and Hf isotopic composi- tions of lesser antilles forearc sediments. Earth Planet Sci Lett 287(1–2):86–99 Carter LB, Skora S, Blundy JD, De Hoog JCM, Elliott T (2015) An experimental study of trace element fluxes from subducted oce- anic crust. J Petrol 56(8):1585–1606f Cas RA, Simmons J (2018) Why deep-water eruptions are so different from subaerial eruptions. Front Earth Sci 6:198 Castillo PR (2012) Adakite petrogenesis. Lithos 134–135:304–316 Ö Ö Çelik ÖF, Marzoli A, Marschik R, Chiaradia M, Neubauer F, Öz İ (2011) Early–middle Jurassic intra-oceanic subduction in the İzmir-Ankara-Erzincan Ocean, northern Turkey. Tectonophys- ics 509(1–2):120–134 1 3 73  Page 18 of 20 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Pa 73 Compston W, Oversby VM (1969) Lead isotopic analysis using a dou- ble spike. J Geophys Res 74(17):4338–4348 Furman T, Graham D (1999) Erosion of lithospheric mantle beneath the East African Rift system: geochemical evidence from the Kivu volcanic province. Declarations Geol Soc Lond Spec Publ 385(1):137 Innocenti F, Manetti P, Mazzuoli R, Pertusati P, Fytikas M, Kolios N et al (2009) Geological map (scale 1:50,000) of limnos island (Greece): explanatory notes. Acta Vulcanol 21(1–2):123–134 Jochum KP, Weis U, Schwager B, Stoll B, Wilson SA, Haug GH et al (2016) Reference values following ISO guidelines for fre- quently requested rock reference materials. Geostand Geoanal Res 40(3):333–350fi Elburg MA, Smet I, Van den Haute P, Vanhaecke F, Klaver M, Andersen T (2018) Extreme isotopic variation documents exten- sional tectonics in arc magmas from Methana, Greece. Lithos 318–319:386–398 Johnson KT (1998) Experimental determination of partition coeffi- cients for rare earth and high-field-strength elements between clinopyroxene, garnet, and basaltic melt at high pressures. Con- trib Miner Petrol 133:60–68 Elliott T (2003) Tracers of the slab. Geophys Monogr Ser 238:23–45 Ü Erbil Ü, Okay AI, Hakyemez A (2021) Late oligocene-early miocene shortening in the Thrace Basin, northern Aegean. Int J Earth Sci 110(6):1921–1936 Jolivet L, Brun JP (2010) Cenozoic geodynamic evolution of the Aegean. Int J Earth Sci 99:109–138 Fabbro G, Druitt TH, Scaillet S (2013) Evolution of the crustal magma plumbing system during the build-up to the 22-ka caldera-form- ing eruption of Santorini (Greece). Bull Volcanol 75(12):1–22 Jolivet L, Faccenna C, Huet B, Labrousse L, Le Pourhiet L (2013) Aegean tectonics: strain localisation, slab tearing and trench retreat. Tectonophys Elsevier 597–598:1–33 Faccenna C, Brun JP (2008) Exhumation of high-pressure rocks driven by slab-rollback. Earth Planet Sci Lett 272:1–7 Jolivet L, Menant A, Sternai P, Rabillard A, Arbaret L, Augier R (2015) The geological signature of a slab tear below the Aegean. Tec- tonophysics 659:166–182 Faccenna C, Becker TW, Auer L, Billi A, Boschi L, Brun JP et al (2014) Mantle dynamics in the Mediterranean. Rev Geophys 52(3):283–332 Karabulut H, Paul A, Özbakir AD, Ergün T, Sentürk S (2019) A new crustal model of the Anatolia-Aegean domain: evidence for the dominant role of isostasy in the support of the Anatolian plateau. Geophys J Int 218:57–73 Feeley TC, Cosca MA (2003) Time vs. composition trends of magma- tism at sunlight volcano, Absaroka volcanic province. Wyoming Geol Soc Am Bull 115:714–728 Foley SF (1992) Vein-plus-wall-rock melting mechanisms in the lithosphere and the origin of potassic alkaline magmas. Lithos 28(3–6):435–453 Kelemen PB (1995) Genesis of high Mg# andesites and the continental crust. Declarations Lithos 184–187:281–299 Lepage LD (2003) ILMAT: an excel worksheet for ilmenite–magnetite geothermometry and geobarometry. Comp Geosci 29(5):673–678 Pe-Piper G, Piper DJ, Bourli N, Zelilidis A (2021) Evolution of sedi- mentary basins as recorded in silica concretions: an example from the Ionian Zone. Western Greece Miner 11:763 Maravelis AG, Boutelier D, Catuneanu O, Seymour KS, Zelilidis A (2016) A review of tectonics and sedimentation in a forearc set- ting: hellenic Thrace Basin, North Aegean Sea and Northern Greece. Tectonophysics 674:1–19 Perkins R, Cooper F, Condon D, Tattitch B, Naden J (2018) Post-col- lisional cenozoic extension in the northern Aegean: the high-K to shoshonitic intrusive rocks of the Maronia Magmatic Cor- ridor, northeastern Greece. Lithosphere 10:582–601 Marchev P, Raicheva R, Downes H, Vaselli O, Chiaradia M, Moritz R (2004) Compositional diversity of Eocene-Oligocene basaltic magmatism in the Eastern Rhodopes, SE Bulgaria: implications for genesis and tectonic setting. Tectonophysics 393:301–328i Perrin A, Goes S, Prytulak J, Rondenay S, Davies DR (2018) Mantle wedge temperatures and their potential relation to volcanic arc location. Earth Planet Sci Lett 501:67–77 Plank T (2005) Constraints from Thorium/Lanthanum on sediment recycling at subduction zones and the evolution of the conti- nents. J Petrol 46(5):921–944 Marroni M, Frassi C, Göncüoglu MC, Di Vincenzo G, Pandolfi L, Rebay G et al (2014) Late Jurassic amphibolite-facies metamor- phism in the Intra-Pontide Suture Zone (Turkey): an eastward extension of the Vardar Ocean from the Balkans into Anatolia? J Geol Soc 171:605–608 Plank T, Langmuir CH (1998) The chemical composition of subducting sediment and its consequences for the crust and mantle. Chem Geol 145:325–394 Marschall HR, Schumacher JC (2012) Arc magmas sourced from mélange diapirs in subduction zones. Nat Geosci 5:862–867 Plank T (1993) Mantle melting and crustal recycling in subduction zones. Dissertation, Columbia University, New York McCulloch MT, Gamble JA (1991) Geochemical and geodynamical constraints on subduction zone magmatism. Earth Planet Sci Lett 102(3–4):358–374 Powell R, Powell M (1977) Geothermometry and oxygen barometry using coexisting iron-titanium oxides: a reappraisal. Mineral Mag 41(318):257–263 McDade P, Blundy JD, Wood BJ (2003a) Trace element partitioning between mantle wedge peridotite and hydrous MgO-rich melt. Am Miner 88:1825–1831 Putirka KD, Mikaelian H, Ryerson F, Shaw H (2003) New clinopyrox- ene-liquid thermobarometers for mafic, evolved, and volatile- bearing lava compositions, with applications to lavas from Tibet and the Snake River Plain. Declarations Idaho Am Miner 88(10):1542–1554i McDade P, Blundy JD, Wood BJ (2003b) Trace element partitioning on the Tinaquillo Lherzolite solidus at 1.5 GPa. Phys Earth Planet in 139:129–147 the Snake River Plain. Idaho Am Miner 88(10):1542–155i Ridolfi F, Renzulli A, Puerini M (2010) Stability and chemical equi- librium of amphibole in calc-alkaline magmas: an overview, new thermobarometric formulations and application to subduction- related volcanoes. Contrib Miner Petrol 160:45–66 Menant A, Jolivet L, Vrielynck B (2016) Kinematic reconstruc- tions and magmatic evolution illuminating crustal and mantle dynamics of the eastern Mediterranean region since the late Cretaceous. Tectonophysics 675:103–140 Ring U, Layer PW (2003) High-pressure metamorphism in the Aegean, eastern Mediterranean: underplating and exhumation from the Late Cretaceous until the Miocene to Recent above the retreating Hellenic subduction zone. Tectonics 22(3):1022 Miller C, Schuster R, Klötzli U, Frank W, Purtscheller F (1999) Post-collisional potassic and ultrapotassic magmatism in SW Tibet: Geochemical and Sr–Nd–Pb–O isotopic constraints for mantle source characteristics and petrogenesis. J Petrol 40(9):1399–1424 Ring U, Layer PW, Reischmann T (2001) Miocene high-pressure metamorphism in the Cyclades and Crete, Aegean Sea, Greece: evidence for large-magnitude displacement on the Cretan detach- ment. Geology 29(5):395–398 Miyashiro A (1974) Volcanic rock series in island arcs and active continental margins. Am J Sci 274:321–355 Ring U, Glodny J, Will TM, Thomson SN (2010) The Hellenic subduc- tion system: High-pressure metamorphism, exhumation, normal faulting, and large-scale extension. Ann Rev Earth Planet Sci 38:45–76 Mutch EJ, Blundy JD, Tattitch BC, Cooper FJ, Brooker RA (2016) An experimental study of amphibole stability in low-pressure granitic magmas and a revised Al-in-hornblende geobarometer. Contrib Miner Petrol 171:85 Robert U, Foden J, Varne R (1992) The Dodecanese Province, SE Aegean: a model for tectonic control on potassic magmatism. Lithos 28:241–260 Nicholls IA (1971) Petrology of santorini volcano, Cyclades. Greece J Petrol 12(1):67–119 Pavlides S, Tsapanos T, Zouros N, Sboras S, Koravos G, Chatzipetros A (2009) Using active fault data for assessing seismic hazard: A case study from NE Aegean Sea, Greece. In: Earthq Geo- tech Eng Satell Conf, 17th Int Conf Soil Mech Geotech Eng, Alexandria, Egypt 1–14 Schaarschmidt A, Haase KM, Voudouris PC, Melfos V, Klemd R (2021a) Migration of arc magmatism above mantle wedge dia- pirs with variable sediment contribution in the Aegean. Geochem Geophys Geosyst 22(6):1–21 Peccerillo A, Taylor SR (1976) Geochemistry of the Eocene calc- alkaline volcanic rocks in the Kastamonu area, northern Tur- key. Declarations Contrib Miner Petrol 120(1):1–19 Kirchenbaur M, Münker C, Schuth S, Garbe-Schönberg D (2012) Tec- tonomagmatic constraints on the sources of Eastern Mediterra- nean K-rich lavas. J Petrol 53(1):27–65 Fornadel AP, Voudouris PC, Spry PG, Melfos V (2012) Mineralogical, stable isotope, and fluid inclusion studies of spatially related por- phyry Cu and epithermal Au-Te mineralization, Fakos Peninsula, Limnos Island, Greece. Miner Petrol 105:85–111 Klaver M, Djuly T, de Graaf S (2015) Temporal and spatial varia- tions in provenance of Eastern Mediterranean Sea sediments: implications for Aegean and Aeolian arc volcanism. Geochim Cosmochim Acta 153:149–168 Förster MW, Prelevic D, Buhre S, Mertz-Kraus R, Foley SF (2019) An experimental study of the role of partial melts of sediments ver- sus mantle melts in the sources of potassic magmatism. J Asian Earth Sci 177:76–88 Koukouvelas IK, Aydin A (2002) Fault structure and related basins of the North Aegean Sea and its surroundings. Tectonics 21:5 Frei R (1995) Evolution of mineralizing fluid in the porphyry copper system of the Skouries deposit, Northeast Chalkidiki (Greece); evidence from combined Pb-Sr and stable isotope data. Econ Geol 90(4):746–762fi Kushiro I (2007) Origin of magmas in subduction zones: a review of experimental studies. Proc Jpn Acad Ser B 83:1–15 Kydonakis K, Brun JP, Sokoutis D (2015) North Aegean core com- plexes, the gravity spreading of a thrust wedge. J Geophys Res: Solid Earth 120:595–616 Fujimaki H, Tatsumoto M, Aoki KI (1984) Partition coefficients of Hf, Zr, and REE between phenocrysts and groundmasses. J Geophys Res 89:662–672 Lambart S, Baker MB, Stolper EM (2016) The role of pyroxen- ite in basalt genesis: Melt-PX, a melting parameterization for 1 3 Contributions to Mineralogy and Petrology (2022) 177: 73 Page 19 of 20 73 mantle pyroxenites between 0.9 and 5 GPa. J Geophys Res 121(8):5708–5735 Pe-Piper G, Piper D, Kokouvelas I, Dolansky L, Kokkalas S (2009) Postorogenic shoshonitic rocks and their origin by melting underplated basalts: The Miocene of Limnos, Greece. Geol Soc Am Bull 121:39–54 Leake BE, Woolley AR, Arps CE, Birch WD, Gilbert MC, Grice J et al (1997) Nomenclature of amphiboles: report of the subcommitte on amphiboles of the International Mineralogical Association, Commission on New Minerals and Mineral Names. Am Min 82:1019–1037 Pe-Piper G, Zhang Y, Piper DJ, Prelevic D (2014) Relationship of Mediterranean type lamproites to large shoshonite volcanoes, Miocene of Lesbos, NE Aegean Sea. Declarations Contrib Miner Petrol 58:63–81 Schaarschmidt A, Klemd R, Regelous M, Voudouris P, Melfos V, Haase KM (2021b) The formation of shoshonitic magma and its relationship to porphyry-type mineralisation: the Maronia pluton in NE Greece. Lithos 380–381:105911 Pe-Piper G, Piper DJ (1992) Geochemical variation with time in the Cenozoic high-K volcanic rocks of the island of Lesbos, Greece: significance for shoshonite petrogenesis. J Volcanol Geoth Res 53:371–387 Schmidt MW, Jagoutz O (2017) The global systematics of primitive arc melts. Geochem Geophys Geosyst 18(8):2817–2854 Schönhofen MV, Haase KM, Beier C, Woelki D, Regelous M (2020) Chemical evolution of calc-alkaline magmas during the ascent through continental crust: constraints from Methana. Aegean Arc J Petrol 61(3):1–30 Pe-Piper G, Piper DJ (1994) Miocene magnesian andesites and dac- ites, Evia, Greece: adakites associated with subducting slab detachment and extension. Lithos 31:125–140 1 3 73  Page 20 of 20 Contributions to Mineralogy and Petrology (2022) 177: 73 73  Page 20 of 20 73 isotope geochemistry of tertiary basalts. NE Greenland J Petrol 35(3):839–879 Sekine T, Wyllie PJ (1983) Experimental simulation of mantle hybridi- zation in subduction zones. J Geol 91:511–528 Seymour KS, Lalonde A (1991) Monitoring oxygen fugacity conditions in pre-, syn- and postcaldera magma chamber of Nisyros volcano, Aegean island arc, Greece. J Volcanol Geoth Res 46:231–240 Thomson SN, Ring U, Brichau S, Glodny J, Thomas M (2009) Tim- ing and nature of formation of the Ios metamorphic core com- plex, southern Cyclades, Greece. Geol Soc Lond Spec Publ 321:139–167 g Sodoudi F, Kind R, Hatzfeld D, Priestley K, Hanka W, Wylegalla K et al (2006) Lithospheric structure of the Aegean obtained from P and S receiver functions. J Geophys Res 111:B12307 Tiepolo M, Vannucci R, Bottazzi P, Oberti R (2000) Partitioning of rare earth elements, Y, Th, U, and Pb between pargasite, kaersutite, and basanite to trachyte melts: Implications for percolated and veined mantle. Geochem Geophys Geosyst 1:8 Sotiropoulos S, Kamperls E, Triantaphyllou M (2003) Thrust sequences in the central part of the external hellenides. Geol Mag 140(6):661–668 Tirel C, Gueydan F, Tiberi C, Brun JP (2004) Aegean crustal thickness inferred from gravity inversion. Geodyn Implic Earth Planet Sci Lett 228(3–4):267–280 g Spandler C, Mavrogenes J, Hermann J (2007) Experimental constraints on element mobility from subducted sediments using high-P syn- thetic fluid/melt inclusions. Chem Geol 239:228–249 Tranos M (2009) Faulting of Lemnos Island; a mirror of faulting of the North Aegean Trough (Northern Greece). Declarations Tectonophysics 467(1–4):72–88 l Spencer KJ, Lindsley DH (1981) A solution model for coexisting iron- titanium oxides. Am Miner 66(11–12):1189–1201 van Hinsbergen DJ, Langereis CG, Meulenkamp JE (2005) Revision of the timing, magnitude and distribution of Neogene rotations in the western Aegean region. Tectonophysics 396(1–2):1–34i Stouraiti C, Mitropoulos P, Tarney J, Barreiro B, McGrath AM, Bal- tatzis E (2010) Geochemistry and petrogenesis of late Miocene granitoids, Cyclades, southern Aegean: nature of source compo- nents. Lithos 114:337–352 Vlahou M, Christofides G, Eleftheriadis G, Pinarelli L, Koroneos A (2006) Tertiary volcanic rocks from Samothraki island (north Aegean, Greece): Sr and Nd isotope constraints on their evolu- tion. Geol Soc Am, Special Papers 409:283–304 Stouraiti C, Pantziris I, Vasilatos C, Kanellopoulos C, Mitropoulos P, Pomonis P et al (2017) Ophiolitic remnants from the upper and intermediate structural unit of the Attic-Cycladic Crystalline Belt (Aegean, Greece): fingerprinting geochemical affinities of magmatic precursors. Geosciences 7(1):14 Waters LE, Lange RA (2015) An updated calibration of the plagi- oclase-liquid hygrometer-thermometer applicable to basalts through rhyolites. A Miner 100:2172–2184 Stracke A, Zindler A, Salters VJ, McKenzie D, Blichert-Toft J, Albarède F, Grönvold K (2003) Theistareykir revisited. Geochem Geophys Geosyst 4(2):8507 Wen G, Li JW, Hofstra AH, Koenig AE, Lowers HA, Adams D (2017) Hydrothermal reequilibration of igneous magnetite in altered granitic plutons and its implications for magnetite classification schemes: Insights from the Handan-Xingtai iron district, North China Craton. Geochim Cosmochim Acta 213:255–270 Straub SM, LaGatta AB, Martin-Del Pozzo AL, Langmuir CH (2008) Evidence from high-Ni olivines for a hybridized peridotite/ pyroxenite source for orogenic andesites from the central Mexi- can Volcanic Belt. Geochem Geophys Geosyst 9(3):Q03007 Wheller GE, Varne R, Foden JD, Abbott MJ (1987) Geochemistry of quaternary volcanics in the Sunda-Banda arc, Indonesia, and three-component genesis of island-arc basaltic magmas. J Vol- canol Geoth Res 32(1–3):137–160 Sun SS, McDonough WF (1989) Chemical and isotopic systemat- ics of oceanic basalts: implications for mantle composition and processes. In: Saunders AD, Norry MJ (eds.), Magmatism in the ocean basins, Geol Soc London, Special Publications 42:313–345 Workman R, Hart S (2005) Major and trace element composition of the depleted MORB mantle (DMM). Earth Planet Sci Lett 23:53–72 Sun CH, Stern RJ (2001) Genesis of Mariana shoshonites: contribu- tion of the subduction component. J Geophys Res 106:589–608 Publisher's Note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Declarations Taymaz T, Yilmaz Y, Dilek Y (2007) The geodynamics of the Aegean and Anatolia. Geol Soc Lond Spec Publ 291:1–16 Thirlwall MF, Upton BG, Jenkins C (1994) Interaction between continental lithosphere and the Iceland plume: Sr-Nd-Pb 1 3 3
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(vooraanvraag niet-WMO verklaring) Onderzoeksprotocol (vooraanvraag niet-WMO verklaring) Onderzoeksprotocol Pagina 1 van 10 (vooraanvraag niet-WMO verklaring) Algemene gegevens Titel COPIED-STUDIE Cognitieve obstakels & Omwegen bij Parkinson: Informatieverwerkingstips voor Elke Dag Een onderzoek naar compensatiestrategieën vanuit patiëntperspectief Datum 1 oktober 2020 Versienummer Indiener Dr. Ingrid Sturkenboom Coördinerende onderzoeker Dr. Ingrid Sturkenboom (Radboudumc), Dr. Esther Steultjens (HAN) Hoofdonderzoeker(s) Drs. Marina Noordegraaf , Verbeeldingskr8, gastmedewerkster Radboudumc Opdrachtgever (verrichter) Radboudumc Onderzoekgegevens Rationale Een aanzienlijk deel van mensen met parkinson heeft last van obstakels in het cognitief functioneren, vaak al voor de diagnose. Denk daarbij aan problemen met aandacht en concentratie, geheugen, snelheid van denken en handelen, overzicht houden en planning, prikkelverwerking en het uitvoeren van (dubbel)taken. Onderzoek en behandeling richten zich vooralsnog voornamelijk op de - meer zichtbare - motorische symptomen. Aandacht voor cognitieve symptomen groeit weliswaar, maar dat leidt nog niet tot wetenschappelijk onderbouwde, praktisch toepasbare hulpmiddelen Algemene gegevens Titel COPIED-STUDIE Cognitieve obstakels & Omwegen bij Parkinson: Informatieverwerkingstips voor Elke Dag Een onderzoek naar compensatiestrategieën vanuit patiëntperspectief Datum 1 oktober 2020 Versienummer Indiener Dr. Ingrid Sturkenboom Coördinerende onderzoeker Dr. Ingrid Sturkenboom (Radboudumc), Dr. Esther Steultjens (HAN) Hoofdonderzoeker(s) Drs. Marina Noordegraaf , Verbeeldingskr8, gastmedewerkster Radboudumc Opdrachtgever (verrichter) Radboudumc Onderzoekgegevens Rationale Een aanzienlijk deel van mensen met parkinson heeft last van obstakels in het cognitief functioneren, vaak al voor de diagnose. Denk daarbij aan problemen met aandacht en concentratie, geheugen, snelheid van denken en handelen, overzicht houden en planning, prikkelverwerking en het uitvoeren van (dubbel)taken. Onderzoek en behandeling richten zich vooralsnog voornamelijk op de - meer zichtbare - motorische symptomen. Aandacht voor cognitieve symptomen groeit weliswaar, maar dat leidt nog niet tot wetenschappelijk onderbouwde, praktisch toepasbare hulpmiddelen Onderzoekgegevens Onderzoeksprotocol COPIED studie – sept 2020 voor de cognitieve obstakels die patiënten in het dagelijkse leven ervaren. In de tussentijd zijn mensen met parkinson zelf ontzettend creatief in het vinden van omwegen waardoor ze hun dagelijkse activiteiten toch uit kunnen voeren. Het zijn deze omwegen die de onderzoekers van de COPIED*-studie gaan ophalen. Eerst wordt een indeling gemaakt van de obstakels en omwegen die al zijn verzameld tijdens de training ‘Parkinson? Houd je aandacht erbij!’ van de Parkinson Vereniging. Dat gebeurt aan de hand met een wetenschappelijk getoetst model voor informatieverwerking (het PRPP-model). Vervolgens scherpt het onderzoeksteam de aard van de obstakels en omwegen aan met een aantal groepsbijeenkomsten en een enquête. Dan volgt de vertaalslag naar een zelfhulptool en gaat de doelgroep er ook echt mee aan de slag. (vooraanvraag niet-WMO verklaring) Onderzoeksprotocol Nadat de onderzoekers hebben gevraagd wat er goed en minder goed werkt, volgt een verbeterslag. Tot slot zetten ze de uiteindelijke zelfhulptool zo breed mogelijk uit onder patiënten en hun omgeving, die met de tool de tips van medepatiënten en hun naasten kunnen gebruiken. Doel Inventariseren en visualiseren van - door patiënten en hun partners werkzaam geachte – omwegen voor het hanteren van cognitieve obstakels bij parkinson. Met dit ontwerpgerichte, toegepaste onderzoek willen we de collectieve wijsheid van patiënten en hun partners in hun dagelijkse omgang met de cognitieve obstakels die de ziekte van Parkinson met zich mee kan brengen, zichtbaar maken en benutten. Dat doen we door de strategieën die patiënten zelf gebruiken te verzamelen, te ordenen en te delen. Het uiteindelijke doel is dat er een zelfhulptool beschikbaar komt die gebruikt kan worden door mensen met parkinson en hun omgeving om cognitieve obstakels te bespreken en te omzeilen. Subdoelstellingen zijn: I. Een verdiepende inventarisatie van cognitieve obstakels en omwegen bij het verwerken van informatie bij mensen met de ziekte voor de cognitieve obstakels die patiënten in het dagelijkse leven ervaren. In de tussentijd zijn mensen met parkinson zelf ontzettend creatief in het vinden van omwegen waardoor ze hun dagelijkse activiteiten toch uit kunnen voeren. Het zijn deze omwegen die de onderzoekers van de COPIED*-studie gaan ophalen. Eerst wordt een indeling gemaakt van de obstakels en omwegen die al zijn verzameld tijdens de training ‘Parkinson? Houd je aandacht erbij!’ van de Parkinson Vereniging. Dat gebeurt aan de hand met een wetenschappelijk getoetst model voor informatieverwerking (het PRPP-model). Vervolgens scherpt het onderzoeksteam de aard van de obstakels en omwegen aan met een aantal groepsbijeenkomsten en een enquête. Dan volgt de vertaalslag naar een zelfhulptool en gaat de doelgroep er ook echt mee aan de slag. Nadat de onderzoekers hebben gevraagd wat er goed en minder goed werkt, volgt een verbeterslag. Tot slot zetten ze de uiteindelijke zelfhulptool zo breed mogelijk uit onder patiënten en hun omgeving, die met de tool de tips van medepatiënten en hun naasten kunnen gebruiken. Subdoelstellingen zijn: Pagina 2 van 10 Onderzoeksprotocol COPIED studie – sept 2020 van Parkinson. II. Koppelen van de gevonden omwegen aan wetenschappelijke theorieën over dagelijks functioneren en het inzetten van cognitieve strategieën. III. Ontwikkelen en implementeren van een wetenschappelijk onderbouwde zelfhulptool met omwegen voor cognitieve obstakels bij parkinson. (vooraanvraag niet-WMO verklaring) Onderzoeksprotocol Studie design Ontwerpgericht (toegepast) wetenschappelijk Fase I: Verdiepen (Kwartaal 1, 2020) Tijdens twee focusgroepbijeenkomsten worden de reeds opgehaalde cognitieve obstakels en omwegen verdiept. We halen niet alleen input op over de ervaren obstakels en omwegen zelf, maar ook over het proces om deze boven tafel te krijgen. We willen weten hoe we – in de inventariserende enquête die daarop volgt - zo gericht mogelijk vragen kunnen stellen die aansluiten bij de dagelijkse situatie van de patiënt. Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Met een online inventariserende enquête onderzoeken we of de geïnventariseerde obstakels, symptoomversterkers en omwegen herkenbaar zijn voor een grotere groep mensen met parkinson. De enquête bestaat deels uit gesloten vragen waarbij patiënten en hun naasten aangeven in welke mate ze een obstakel en omweg herkennen (kwantitatieve data). Daarnaast vragen wij middels open vragen om toelichting en verdiepende informatie (kwalitatieve data). Naast de enquête sturen we de onderzoeksdeelnemers een korte - voor de ziekte van Parkinson gevalideerde - functionele vragenlijst: De PD-CFRS (Parkinson’s Disease-Cognitive Functional Rating Scale). Deze vragenlijst meet relevante functionele veranderingen gerelateerd aan milde cognitieve stoornissen bij parkinson. Hiermee kunnen wij de populatie beschrijven. Tijdens twee focusgroepbijeenkomsten worden de reeds opgehaalde cognitieve obstakels en omwegen verdiept. We halen niet alleen input op over de ervaren obstakels en omwegen zelf, maar ook over het proces om deze boven tafel te krijgen. We willen weten hoe we – in de inventariserende enquête die daarop volgt - zo gericht mogelijk vragen kunnen stellen die aansluiten bij de dagelijkse situatie van de patiënt. Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Met een online inventariserende enquête onderzoeken we of de geïnventariseerde obstakels, symptoomversterkers en omwegen herkenbaar zijn voor een grotere groep mensen met parkinson. De enquête bestaat deels uit gesloten vragen waarbij patiënten en hun naasten aangeven in welke mate ze een obstakel en omweg herkennen (kwantitatieve data). Daarnaast vragen wij middels open vragen om toelichting en verdiepende informatie (kwalitatieve data). Naast de enquête sturen we de onderzoeksdeelnemers een korte - voor de ziekte van Parkinson gevalideerde - functionele vragenlijst: De PD-CFRS (Parkinson’s Disease-Cognitive Functional Rating Scale). Deze vragenlijst meet relevante functionele veranderingen gerelateerd aan milde cognitieve stoornissen bij parkinson. Hiermee kunnen wij de populatie beschrijven. Pagina 3 van 10 Pagina 3 van 10 Onderzoeksprotocol COPIED studie – sept 2020 P i 4 10 Fase 3: Zelfhulptool ontwikkelen en evalueren (Kwartaal 3 en 4, 2020) Met de resultaten uit de focusgroep bijeenkomst en enquête wordt een zelfhulptool ontwikkeld. Afhankelijk van de onderzoeksresultaten kan deze bijvoorbeeld de vorm aannemen van een poster, kwartet, waaier, app. Het gebruik en de bruikbaarheid van de zelfhulptool wordt na een testperiode van 2 maanden bij een kleine groep gebruikers vastgesteld via semigestructureerde interviews . Fase 4: Implementatie (Kwartaal 1, 2021) Bijstellen en implementeren van de zelfhulptool Met de resultaten uit stap 4 wordt de zelfhulptool waar nodig bijgesteld. Studie populatie Mensen met parkinson en hun partners. Bij de werving streven we naar voldoende diversiteit (geslacht, leeftijdsgroep, culturele achtergrond, patiënt/partner, aard en ernst van de ervaren beperkingen). In fase 1: Verdiepen gaan we per focusgroep uit van 6 mensen met parkinson en 2 partners/belangrijke anderen. Inclusiecriteria Inclusiecriteria zijn: - een zelfgerapporteerde diagnose (idiopathische) ziekte van Parkinson of een betrokken volwassen naaste partner van iemand met parkinson. - ervaren cognitieve beperkingen bij het dagelijks functioneren Voor Fase 1: Verdiepen, geldt nog een extra inclusiecriterium: Bereid en in staat om te reizen naar en deel te nemen aan een bijeenkomst van twee uur. Informed consent tijdens inclusie Fase 1: Verdiepen. De betrokken personen ontvangen een informatiebrief voor deelname aan de focusgroepbijeenkomst. Deze nemen ze ondertekend mee naar de bijeenkomst. De deelnemer behoudt een exemplaar van de getekende toestemmingsverklaring. Fase 3: Zelfhulptool ontwikkelen en evalueren (Kwartaal 3 en 4, 2020) Met de resultaten uit de focusgroep bijeenkomst en enquête wordt een zelfhulptool ontwikkeld. Afhankelijk van de onderzoeksresultaten kan deze bijvoorbeeld de vorm aannemen van een poster, kwartet, waaier, app. Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Het gebruik en de bruikbaarheid van de zelfhulptool wordt na een testperiode van 2 maanden bij een kleine groep gebruikers vastgesteld via semigestructureerde interviews . Onderzoeksprotocol COPIED studie – sept 2020 Fase 2: Verifiëren en prioriteren. De inventariserende enquête wordt digitaal afgenomen. Tijdens de introductie van de enquête worden respondenten duidelijk geïnformeerd over de inhoud van het onderzoek en hun rechten en wordt hen om toestemming gevraagd om de data te verzamelen, te analyseren en geanonimiseerd te delen. Door de enquête in te vullen, stemmen ze hiermee in. Fase 3: Zelfhulptool ontwikkelen en evalueren. De betrokken personen ontvangen een informatiebrief en toestemmingsformulier welke ondertekend teruggestuurd moet worden. De deelnemer behoudt een exemplaar van de getekende toestemmingsverklaring. Exclusiecriteria Exclusiecriteria zijn: Voor Fase 1: Verdiepen is het exclusiecriterium als volgt: Mensen die aanwezig waren bij de extra ‘omwegen bijeenkomst’ tijdens de najaarseditie van 2019 van de cursus ‘Parkinson? Houd je aandacht erbij!’ van de Parkinson Vereniging. Voor alle fasen: niet in staat (in het Nederlands) te communiceren. Aantal proefpersonen/ sample grootte Fase 1: Verdiepen Er worden twee focusgroepbijeenkomsten (2 x n =8) gehouden. Gezien de informatie die al verzameld is in het voortraject voorafgaan aan deze studie, verwachten we met n = 16 het punt van verzadiging te bereiken. Per focusgroep doen n=6 mensen met parkinson en n=2 partners/belangrijke anderen mee. Fase 2: Verifiëren en prioriteren De inventariserende enquête wordt in Nederland en Vlaanderen uitgezet via verschillende kanalen. Het streefgetal is 250 deelnemers. We verwachten zeker dat dit haalbaar is gezien de resultaten van een andere recente enquête bij mensen met parkinson die in korte tijd Fase 2: Verifiëren en prioriteren. De inventariserende enquête wordt digitaal afgenomen. Tijdens de introductie van de enquête worden respondenten duidelijk geïnformeerd over de inhoud van het onderzoek en hun rechten en wordt hen om toestemming gevraagd om de data te verzamelen, te analyseren en geanonimiseerd te delen. Door de enquête in te vullen, stemmen ze hiermee in. Pagina 5 van 10 door 800 mensen was ingevuld. Fase 3: Zelfhulptool ontwikkelen en evalueren De tool wordt - met een duidelijke instructie voor gebruik - uitgezet onder n = 15 (15 patiënten en zo mogelijk hun naasten). We verwachten met 15 gebruikers het punt van verzadiging te bereiken (Guest, 2016). Werving proefpersonen De werving vindt plaats via de Parkinson Vereniging, de Vlaamse Parkinson Liga, het netwerk van de klankbordgroep en ParkinsonNext. Interventie Fase 1: Verdiepen. Twee focusgroepbijeenkomsten. Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Fase 2: Verifiëren en prioriteren. Inventariserende enquête. Fase 3: Zelfhulptool ontwikkelen en evalueren. Gebruik van de zelfhulptool thuis gevolgd door een semigestructureerd interview. Standaardzorg / Standaardbehandeling Deze interventie maakt nog geen deel uit van de standaardzorg. Wel draagt dit onderzoek bij aan meer kennis over gepersonaliseerde interventiemogelijkheden bij cognitieve problemen als gevolg van parkinson. Het is de bedoeling dat de te ontwikkelen zelfhulptool de eigen regie en het zelfmanagement van de persoon met parkinson en zijn/haar omgeving op een praktische manier ondersteunt. De tool is behulpzaam voor patiënten zelf, bij gesprekken tussen patiënten en naasten onderling en ook bij gesprekken tussen patiënten, naasten en zorgprofessionals over (para)medische behandelingen op cognitief gebied. Aan de hand van de tool kunnen patiënten hun voorkeuren en verwachtingen over cognitieve strategieën delen met zorgprofessionals. Omdat de omwegen gekoppeld zijn aan de methodiek die ergotherapeuten zelf gebruiken, wordt het makkelijker om de gezamenlijke uitgangspunten helder te krijgen. Zorgprofessionals worden via de tool ondersteund en gestimuleerd om werkwijzen te gebruiken die aansluiten bij de ervaringen van de door 800 mensen was ingevuld. Onderzoeksprotocol COPIED studie – sept 2020 patiënt. Om de tool voor deze doelen in te zetten, is er bij de implementatie niet alleen aandacht voor het in gebruik nemen van de zelfhulptool door patiënten zelf, maar ook door zorgverleners, de Parkinson Vereniging en door zorgnetwerken zoals ParkinsonNet. Binnen dit project zijn de hiervoor relevante partners vertegenwoordigd in het projectteam en de klankbordgroep Studie parameters Fase 1: Verdiepen en Fase 2: Verifiëren en prioriteren. Fase 1 en 2 leiden tot een geprioriteerd overzicht van obstakels en omwegen. Welke obstakels doen er het meeste toe? Welke strategieën om de obstakels te omzeilen zijn het meest behulpzaam? Fase 3: Zelfhulptool ontwikkelen en evalueren. De studieparameters zijn het gebruik van de zelfhulptool (o.a. hoe vaak is deze gebruikt, welke delen worden voornamelijk gebruikt) en de bruikbaarheid ervan (o.a. wat is het ervaren nut, hoe begrijpelijk is de tool, wat vinden de deelnemers van de vorm) bij het bespreken en inzetten van omwegen bij cognitieve obstakels tijdens het dagelijks handelen. Analyses Fase 1: Verdiepen De bijeenkomst wordt opgenomen (audio) en er wordt een gepseudonimiseerd transcript gemaakt van de delen die relevant zijn voor de onderzoeksvraag. Het transcript en de feedback van de observatoren worden gecodeerd naar categorie van genoemde obstakels/omwegen. Het coderen gebeurt door de hoofdonderzoeker en de onderzoeksassistent, onafhankelijk van elkaar. Fase 2: Verifiëren en prioriteren (Kwartaal 2, 2020) Vervolgens bespreken zij de codering tot er overeenstemming is. Fase 2: Verifiëren en prioriteren Na de sluitingstermijn van de enquête worden de kwantitatieve data beschrijvend geanalyseerd met behulp van SPSS. De kwalitatieve data worden thematisch geanalyseerd naar type cognitief obstakel/omweg en waar passend gekoppeld aan theorieën van toegepaste cognitie/ De bijeenkomst wordt opgenomen (audio) en er wordt een gepseudonimiseerd transcript gemaakt van de delen die relevant zijn voor de onderzoeksvraag. Het transcript en de feedback van de observatoren worden gecodeerd naar categorie van genoemde obstakels/omwegen. Het coderen gebeurt door de hoofdonderzoeker en de onderzoeksassistent, onafhankelijk van elkaar. Vervolgens bespreken zij de codering tot er overeenstemming is. Fase 2: Verifiëren en prioriteren Fase 2: Verifiëren en prioriteren Na de sluitingstermijn van de enquête worden de kwantitatieve data beschrijvend geanalyseerd met behulp van SPSS. De kwalitatieve data worden thematisch geanalyseerd naar type cognitief obstakel/omweg en waar passend gekoppeld aan theorieën van toegepaste cognitie/ informatieverwerking. Het coderen en categoriseren gebeurt door de Pagina 7 van 10 Onderzoeksprotocol COPIED studie – sept 2020 P i 8 10 hoofdonderzoeker en de onderzoeksassistent, onafhankelijk van elkaar. Vervolgens bespreken zij de uitkomsten tot er overeenstemming is. Fase 3: Zelfhulptool ontwikkelen en evalueren. De interviews worden opgenomen (audio) en er worden gepseudonimiseerde transcripten gemaakt van de delen die relevant zijn voor de onderzoeksvraag. De kwalitatieve data worden thematisch inductief geanalyseerd door de data te coderen en categoriseren (Hsieh, 2005; van Staa, 2010). Dit gebeurt door de hoofdonderzoeker en onderzoeksassistent afzonderlijk, waarna ze gezamenlijk tot consensus komen. De kwantitatieve data worden beschrijvend geanalyseerd. Voor data-analyse wordt als hulpmiddel Atlas.ti gebruikt. Belasting voor de proefpersoon Fase 1: Verdiepen. Focusgroepbijeenkomst van 2 uur, op locatie waarbij we de dan geldende Corona-regels vanzelfsprekend in acht nemen. Fase 2: Verifiëren en prioriteren. Inventariserende enquête van maximaal 20 minuten. Fase 3: Zelfhulptool ontwikkelen en evalueren. Gebruik van de zelfhulptool thuis (twee maanden lang, minimaal 1 x per week gedurende minimaal vijf minuten), gevolgd door een semigestructureerd interview van maximaal een uur, in principe bij de deelnemers thuis of online indien de deelnemer dat wenst of wegens Corona noodzakelijk is. Risico voor de proefpersoon Geen Voordelen deelname aan het onderzoek Er wordt serieus gekeken naar de eigen inbreng en die inbreng wordt (niet tot de persoon herleidbaar) verwerkt in een zelfhulptool. Deelnemers zien zo een stukje van hun eigen input terug in de zelfhulptool, welke na het onderzoek geïmplementeerd wordt voor gebruik door patiënten en zorgverleners. hoofdonderzoeker en de onderzoeksassistent, onafhankelijk van elkaar. Vervolgens bespreken zij de uitkomsten tot er overeenstemming is. Fase 3: Zelfhulptool ontwikkelen en evalueren. De interviews worden opgenomen (audio) en er worden gepseudonimiseerde transcripten gemaakt van de delen die relevant zijn voor de onderzoeksvraag. De kwalitatieve data worden thematisch inductief geanalyseerd door de data te coderen en categoriseren (Hsieh, 2005; van Staa, 2010). Dit gebeurt door de hoofdonderzoeker en onderzoeksassistent afzonderlijk, waarna ze gezamenlijk tot consensus komen. De kwantitatieve data worden beschrijvend geanalyseerd. Pagina 8 van 10 Onderzoeksprotocol COPIED studie – sept 2020 Nadelen deelname aan het onderzoek Mogelijk is het confronterend om met de eigen cognitieve obstakels geconfronteerd te worden. Fase 2: Verifiëren en prioriteren Pagina 9 van 10 Onderzoeksprotocol COPIED studie – sept 2020 De getekende toestemmingsverklaringen worden door de hoofdonderzoeker gedigitaliseerd, waarna de papieren versies vernietigd worden. De deelnemers worden genoteerd op het identificatielog (studienummer wordt toegekend), zodat de rest van de gegevens gecodeerd verzameld kan worden. Het identificatielog is alleen toegankelijk voor de onderzoekers Marina Noordegraaf en Ingrid Sturkenboom. De overige onderzoeksgegevens staan gescheiden van het identificatie log. Data delen: Ook na anonimisatie bestaat de mogelijkheid dat een interview/gesprekspassage – door indirect identificeerbare data - herleid kan worden tot een persoon. Dat komt omdat er tijdens de focusgroepbijeenkomsten en semigestructureerde interviews de diepte in wordt gegaan en de mogelijkheid bestaat dat er dan dingen uitgewisseld worden die kunnen leiden tot de identificatie van een persoon. De transcripten van de focusgroepbijeenkomsten en semigestructureerde interviews zullen daarom gedeeld worden in restricted access via DANS EASY (https://easy.dans.knaw.nl/ui/home) of een andere geschikte data repository. De enquête data worden geheel geanonimiseerd gedeeld in open access via dezelfde repository. Beide manieren leiden tot FAIR data (Findable, Accessible, Interoperable, Reusable). Publicatiebeleid en amendementen Over dit onderzoek zal verslag worden gedaan via de Parkinson Vereniging, de blog van de hoofonderzoeker alsmede in de wetenschappelijke literatuur. De data worden gepubliceerd als FAIR data. Overige punten van belang voor de METc De getekende toestemmingsverklaringen worden door de hoofdonderzoeker gedigitaliseerd, waarna de papieren versies vernietigd worden. De deelnemers worden genoteerd op het identificatielog (studienummer wordt toegekend), zodat de rest van de gegevens gecodeerd verzameld kan worden. Het identificatielog is alleen toegankelijk voor de onderzoekers Marina Noordegraaf en Ingrid Sturkenboom. De overige onderzoeksgegevens staan gescheiden van het identificatie log. Fase 2: Verifiëren en prioriteren Vergoeding voor de proefpersoon Fase 1. Verdiepen De deelnemers aan de focusgroepen krijgen indien van toepassing reiskostenvergoeding en versnaperingen tijdens de bijeenkomst. Fase 2: Verifiëren en prioriteren. Nvt Fase 3. Zelfhulptool ontwikkelen en evalueren. De mensen die de zelfhulptool testen, krijgen een nader te bepalen attentie. Administratieve aspecten Data verzameling: In totaal zijn er drie verschillende methoden van data verzameling: de focusgroepbijeenkomst, de inventariserende enquête en het semigestructureerde interview. Data opslag, privacy en data veiligheid: Data van de focusgroepbijeenkomsten en semigestructureerde interviews wordt opgenomen via een mp3-opnameapparaat met een verbinding met een laptop met toegang tot het beveiligde netwerk van de Radboudumc (VMWare Horizon Client). De opname wordt direct na elke focusgroepbijeenkomst en interview direct doorgesluisd naar een gedeelde netwerkschijf, in een submap van de map RAW data, te weten ‘Focusgroep data’ en ‘Interview data’. Deze mappen zijn versleuteld. De opname op het opnameapparaat zelf wordt direct na de bijeenkomst/het interview gewist. De laptop zelf is beveiligd tegen ongeautoriseerde toegang met BitLocker. Vervolgens worden de data getranscribeerd en geanonimiseerd waarna de opnames zelf worden vernietigd. De enquête wordt uitgezet met een beveiligde tool. De enquête wordt ontworpen volgens de principes van privacy by design. Er wordt niet gevraagd naar tot de persoon herleidbare gegevens die er niet toe doen voor de onderzoeksvragen. De data worden opgeslagen in de gedeelde netwerkschijf in de map RAW data, submap ‘Enquête data’. Data van de focusgroepbijeenkomsten en semigestructureerde interviews wordt opgenomen via een mp3-opnameapparaat met een verbinding met een laptop met toegang tot het beveiligde netwerk van de Radboudumc (VMWare Horizon Client). De opname wordt direct na elke focusgroepbijeenkomst en interview direct doorgesluisd naar een gedeelde netwerkschijf, in een submap van de map RAW data, te weten ‘Focusgroep data’ en ‘Interview data’. Deze mappen zijn versleuteld. De opname op het opnameapparaat zelf wordt direct na de bijeenkomst/het interview gewist. De laptop zelf is beveiligd tegen ongeautoriseerde toegang met BitLocker. Vervolgens worden de data getranscribeerd en geanonimiseerd waarna de opnames zelf worden vernietigd. De enquête wordt uitgezet met een beveiligde tool. De enquête wordt ontworpen volgens de principes van privacy by design. Er wordt niet gevraagd naar tot de persoon herleidbare gegevens die er niet toe doen voor de onderzoeksvragen. De data worden opgeslagen in de gedeelde netwerkschijf in de map RAW data, submap ‘Enquête data’. Onderzoeksprotocol COPIED studie – sept 2020 Data delen: Ook na anonimisatie bestaat de mogelijkheid dat een interview/gesprekspassage – door indirect identificeerbare data - herleid kan worden tot een persoon. Dat komt omdat er tijdens de focusgroepbijeenkomsten en semigestructureerde interviews de diepte in wordt gegaan en de mogelijkheid bestaat dat er dan dingen uitgewisseld worden die kunnen leiden tot de identificatie van een persoon. De transcripten van de focusgroepbijeenkomsten en semigestructureerde interviews zullen daarom gedeeld worden in restricted access via DANS EASY (https://easy.dans.knaw.nl/ui/home) of een andere geschikte data repository. De enquête data worden geheel geanonimiseerd gedeeld in open access via dezelfde repository. Beide manieren leiden tot FAIR data (Findable, Accessible, Interoperable, Reusable). Publicatiebeleid en amendementen Over dit onderzoek zal verslag worden gedaan via de Parkinson Vereniging, de blog van de hoofonderzoeker alsmede in de wetenschappelijke literatuur. De data worden gepubliceerd als FAIR data. Overige punten van belang voor de METc Ook na anonimisatie bestaat de mogelijkheid dat een interview/gesprekspassage – door indirect identificeerbare data - herleid kan worden tot een persoon. Dat komt omdat er tijdens de focusgroepbijeenkomsten en semigestructureerde interviews de diepte in wordt gegaan en de mogelijkheid bestaat dat er dan dingen uitgewisseld worden die kunnen leiden tot de identificatie van een persoon. De transcripten van de focusgroepbijeenkomsten en semigestructureerde interviews zullen daarom gedeeld worden in restricted access via DANS EASY (https://easy.dans.knaw.nl/ui/home) of een andere geschikte data repository. De enquête data worden geheel geanonimiseerd gedeeld in open access via dezelfde repository. Beide manieren leiden tot FAIR data (Findable, Accessible, Interoperable, Reusable). Pagina 10 van 10 Onderzoeksprotocol COPIED studie – sept 2020
https://openalex.org/W2915932846
https://europepmc.org/articles/pmc6408997?pdf=render
English
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Glucagon-Like Peptide-1 Receptor Agonist Protects Dorsal Root Ganglion Neurons against Oxidative Insult
Journal of diabetes research
2,019
cc-by
7,939
Received 15 August 2018; Revised 23 November 2018; Accepted 30 December 2018; Published 21 February 2019 Guest Editor: Julia M. dos Santos Copyright © 2019 Mohammad Sarif Mohiuddin et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Objective. Diabetic polyneuropathy (DPN) is one of the most prevalent diabetic complications. We previously demonstrated that exendin-4 (Ex4), a glucagon-like peptide-1 receptor agonist (GLP-1RA), has beneficial effects in animal models of DPN. We hypothesized that GLP-1 signaling would protect neurons of the peripheral nervous system from oxidative insult in DPN. Here, the therapeutic potential of GLP-1RAs on DPN was investigated in depth using the cellular oxidative insult model applied to the dorsal root ganglion (DRG) neuronal cell line. Research Design and Methods. Immortalized DRG neuronal 50B11 cells were cultured with and without hydrogen peroxide in the presence or absence of Ex4 or GLP-1(7-37). Cytotoxicity and viability were determined using a lactate dehydrogenase assay and MTS (3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2- (4-sulfophenyl)-2H-tetrazolium inner salt), respectively. Antioxidant enzyme activity was evaluated using a superoxide dismutase assay. Alteration of neuronal characteristics of 50B11 cells induced by GLP-1RAs was evaluated with immunocytochemistry utilizing antibodies for transient receptor potential vanilloid subfamily member 1, substance P, and calcitonin gene-related peptide. Cell proliferation and apoptosis were also examined by ethynyl deoxyuridine incorporation assay and APOPercentage dye, respectively. The neurite projection ratio induced by treatment with GLP-1RAs was counted. Intracellular activation of adenylate cyclase/cyclic adenosine monophosphate (cAMP) signaling was also quantified after treatment with GLP-1RAs. Results. Neither Ex4 nor GLP-1(7-37) demonstrated cytotoxicity in the cells. An MTS assay revealed that GLP-1RAs amended impaired cell viability induced by oxidative insult in 50B11 cells. GLP-1RAs activated superoxide dismutase. GLP-1RAs induced no alteration of the distribution pattern in neuronal markers. Ex4 rescued the cells from oxidative insult-induced apoptosis. GLP-1RAs suppressed proliferation and promoted neurite projections. No GLP-1RAs induced an accumulation of cAMP. Conclusions. Our findings indicate that GLP-1RAs have neuroprotective potential which is achieved by their direct actions on DRG neurons. Beneficial effects of GLP-1RAs on DPN could be related to these direct actions on DRG neurons. Hindawi Journal of Diabetes Research Volume 2019, Article ID 9426014, 10 pages https://doi.org/10.1155/2019/9426014 Hindawi Journal of Diabetes Research Volume 2019, Article ID 9426014, 10 pages https://doi.org/10.1155/2019/9426014 Mohammad Sarif Mohiuddin,1 Tatsuhito Himeno ,1 Rieko Inoue,1 Emiri Miura-Yura,1 Yuichiro Yamada,1 Hiromi Nakai-Shimoda,1 Saeko Asano,1 Makoto Kato,1 Mikio Motegi,1 Masaki Kondo,1 Yusuke Seino,2 Shin Tsunekawa,1 Yoshiro Kato,1 Atsushi Suzuki,2 Keiko Naruse ,3 Koichi Kato,4 Jiro Nakamura,1 and Hideki Kamiya 1 Mohammad Sarif Mohiuddin,1 Tatsuhito Himeno ,1 Rieko Inoue,1 Emiri Miura-Yura,1 Yuichiro Yamada,1 Hiromi Nakai-Shimoda,1 Saeko Asano,1 Makoto Kato,1 Mikio Motegi,1 Masaki Kondo,1 Yusuke Seino,2 Shin Tsunekawa,1 Yoshiro Kato,1 Atsushi Suzuki,2 Keiko Naruse ,3 Koichi Kato,4 Jiro Nakamura,1 and Hideki Kamiya 1 1Division of Diabetes, Department of Internal Medicine, Aichi Medical University School of Medicine, Nagakute, Japan 2Division of Endocrinology and Metabolism, Department of Internal Medicine, Fujita Health University School of Medicine, Toyoake, Aichi, Japan Division of Diabetes, Department of Internal Medicine, Aichi Medical University School of Medicine, Nagakute, Japan 2Division of Endocrinology and Metabolism, Department of Internal Medicine, Fujita Health University School of Medicine, Toyoake, Aichi, Japan 3Department of Internal Medicine, Aichi Gakuin University School of Dentistry, Nagoya, Japan 4Department of Medicine, Aichi Gakuin University School of Pharmacy, Nagoya, Japan 3Department of Internal Medicine, Aichi Gakuin University School of Dentistry, Nagoya, Japan 4Department of Medicine, Aichi Gakuin University School of Pharmacy, Nagoya, Japan orrespondence should be addressed to Hideki Kamiya; hkamiya@aichi-med-u.ac.jp Correspondence should be addressed to Hideki Kamiya; hkamiya@aichi-med-u.ac.jp Received 15 August 2018; Revised 23 November 2018; Accepted 30 December 2018; Published 21 February 2019 Received 15 August 2018; Revised 23 November 2018; Accepted 30 December 2018; Published 21 February 2019 1. Introduction complications and causes nontraumatic amputations of lower limbs [1]. Due to the lack of therapies to address the etiology of neurodegeneration in the peripheral nervous sys- tem (PNS) of diabetic patients, glucose-lowering therapy is Among many significant diabetic complications, diabetic polyneuropathy (DPN) is one of the most prevalent Journal of Diabetes Research 2 37°C under 5% CO2 in media consisting of Neurobasal™ medium supplemented with 5% fetal bovine serum, 2 mM L-glutamine, and B-27 supplement. 50B11 cells were kept in uncoated plastic tissue culture dishes and regularly passaged once a week with a 1 : 10-1 : 20 split ratio. For each experiment as described in the sections, cells were treated with Ex4 (0.1 nM, 1 nM, 10 nM, and 100 nM), human GLP-1(7-37) (1 nM, 10nM), or 10 μM forskolin. Oxidative insult was induced by hydrogen peroxide (0.01 mM, 0.05 mM, and 0.1 mM). the only effective therapy to prevent the onset and progres- sion of DPN [2]. In the current study, we investigated the beneficial effects of glucagon-like peptide-1 (GLP-1) signal- ing in neurons of the PNS using an in vitro model of DPN. GLP-1, an incretin hormone which lowers blood glucose levels through enhancement of glucose-stimulated insulin secretion (GSIS), also has pleiotropic effects. In nervous sys- tems, GLP-1 has a regulatory effect on food intake through the intermediary of the vagus nerve and the central nervous system (CNS) [3–7]. It is known that GLP-1 activates adenyl- ate cyclase and employs cAMP as a second messenger to enhance GSIS in pancreatic beta cells [8, 9]. The cAMP sig- naling has been proven to stimulate neurite outgrowth [10, 11] and antagonize apoptosis of PNS neurons or PC12 cells [12]. In some kinds of nonneural cells including pancreatic beta cells and cardiomyocytes, antiapoptotic effects of GLP-1 receptor agonists (GLP-1RAs) have been also shown [13–16]. Additionally, it has been reported that activation of GLP-1 signaling modified cell fate and differentiation in pancreatic beta cells [17, 18]. GLP-1 signaling induced in vivo reprogramming of pancreatic exocrine cells into beta cells [17] and in vitro differentiation of human embryonic stem cells into insulin-producing cells [19]. 2.2. Cell Cytotoxicity Assay. Cells were seeded into 96-well plates at a density of 1 × 104 cells/well in 100 μl medium. Cell cytotoxicity was assessed using lactate dehydrogenase (LDH) assay (Cytotoxicity LDH Assay Kit-WST, Dojindo Laborato- ries, Mashiki, Japan) following the manufacturer’s instruc- tions. 1. Introduction The absorbance at 490 nm was measured on a microplate reader (VersaMax, Molecular Devices, Sunnyvale, CA, USA). Cytotoxicity was calculated by the following for- mula: cytotoxicity % = sample OD – low control OD / high control OD – low control OD × 100 (OD: optical den- sity). Each OD value was calculated by subtracting the back- ground value from each absorbance value. Previously, we reported the beneficial effects of exendin-4 (Ex4) (also known as exenatide), a GLP-1RA, in the PNS of diabetic mice [20]. In that prior study, we indicated the improvement of DPN using an in vivo model but the mech- anism of the favorable effects on the PNS has not yet been identified. Although we have proven that the elongation of neurite outgrowth using a tissue culture system of mouse dorsal root ganglion (DRG) was accelerated by supplementa- tion of Ex4 or GLP-1, detailed effects of GLP-1RAs in the DRG should be still elucidated. 2.3. Immunocytochemistry. To exclude the possibility of alter- ation in neuronal characteristics by GLP-1RAs which might induce a reprogramming of cell fate, the characteristics as a sensory neuronal cell were evaluated with the distribution of neuronal markers: transient receptor potential vanilloid subfamily member 1 (TRPV1), substance P, and calcitonin gene-related peptide (CGRP). After a 36-hour culture with or without 100 nM Ex4 or 10 nM GLP-1, DRG cells were fixed with 4% paraformaldehyde for 15 minutes. The cells were blocked with 1% bovine serum albumin, and the follow- ing primary antibodies were applied at 4°C overnight: rabbit polyclonal anti-TRPV1 antibody (1 : 200; Neuromics, North- field, MN, USA), goat polyclonal anti-substance P antibody (1 : 200; Santa Cruz, Santa Cruz, CA, USA), and goat poly- clonal anti-CGRP antibody (1 : 200; Santa Cruz). After wash- ing, the following secondary antibodies were loaded for 1 hour at room temperature in a dark box: Alexa Fluor™ 594-coupled goat anti-rabbit IgG antibody (1 : 500) or Alexa Fluor™488-coupled donkey anti-goat antibody (1 : 500). Images were captured by a charge-coupled device (CCD) camera using a fluorescence microscope (IX73, Olympus Optical, Tokyo, Japan). Among various mechanisms of pathogenesis in DPN, chronic inflammation followed by oxidative stress has been highlighted by several researchers [21, 22]. For instance, cyclooxygenase-2-deficient mice were protected from dysfunction of the PNS in experimental diabetes [23]. 1. Introduction Given that oxidative stress due to various biological pathways, including chronic low-grade inflammation, has been suggested as a pathogenesis and a therapeutic target of DPN [21, 24, 25], we attempted to provide oxidative stress in our culture system. However, it remains to be clarified which factor is crucial in the pathology of DPN, e.g., glucotoxicity, insulin resistance, or lipotoxicity [21]. Therefore, we provided oxidative insult by hydrogen per- oxide, which is a widely used oxidant in experimental set- tings and converts into the stronger oxidant hydroxyl radical, in the cell culture system of the DRG neuron cell line to reproduce DPN pathology in this study. 2.4. Cell Viability Assay. To elucidate the effects of GLP-1RAs in DRG neurons under oxidative stress, cell viability of DRG neurons cultured with or without hydrogen peroxide in the presence or absence of GLP-1RAs was assessed. A 3-(4,5- dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenenyl)-2-(4- sulfophenyl)-2H-tetrazolium inner salt (MTS) assay, which correlated mitochondrial activity, was employed to measure cell viability in DRG neurons. Cells were seeded into 96-well plates at a density of 1 × 104 cells/well in 100 μl medium. Cell viability was determined 24 hours after treatment using the CellTiter96™AQueous One Solution Cell Proliferation Assay (Promega Corporation, Madison, WI, USA), which employed 2. Materials and Methods Unless noted otherwise, all reagents and materials were pur- chased from Thermo Fisher Scientific (Waltham, MA, USA). 2.1. Cell Culture. The DRG neuronal cell line (50B11) estab- lished and kindly provided by Dr. A. Höke (Johns Hopkins University, Baltimore, MD, USA) [26] was incubated at Journal of Diabetes Research 3 tetrazolium compound MTS, according to the manufacturer’s protocol.Theabsorbance at490 nmwasmeasuredonamicro- plate reader (VersaMax). Cells were seeded into 6-well plates at a density of 5 × 105 cells/well. The media were aspirated 20 or 120 minutes after exposure to test substances, and 250 μl of 0.1 N HCl was introduced. After 20 minutes incubation at room temperature, cells were scraped and centrifuged. The supernatants were stored at -80°C until the time of mea- surement. For the experiment with 120-minute exposure to test substances, the medium contained 0.5 mM 3-isobu- tyl-1-methyl xanthine (IBMX), a phosphodiesterase inhibi- tor, to inhibit cAMP degradation. 2.5. Superoxide Dismutase- (SOD-) Like Activity. To evaluate antioxidant activity, SOD-like activity was measured using an SOD-like assay kit (Dojindo Inc., Kumamoto, Japan) according to the manufacturer’s instructions [27]. Equal amounts of protein, as determined using a bicinchoninic acid protein assay (Wako Pure Chemical Inc., Osaka, Japan), were applied. Cells were seeded into 96-well plates at a den- sity of 1 × 104 cells/well in 100 μl medium. After 24hours, cells were supplemented with GLP-1RAs (10 nM GLP-1, 100 nM Ex4) or left untouched. After 12 hours of treatment with/without GLP-1RAs, the media were replaced with media containing 0.1 mM hydrogen peroxide. SOD-like activity was determined 30 minutes after the exposure with hydrogen peroxide. 2.10. Statistical Analysis. All the group values were expressed as means ± standard deviation. Data are representative of at least three independent experiments. The normality of distri- bution was tested by the Kolmogorov-Smirnov test using R version 3.4.3 (http://www.r-project.org/, Vienna, Austria,). Statistical analyses were made by Student’s t-test or one- way ANOVA with the Bonferroni correction for multiple comparisons using StatView version 5.0 (SAS Institute, Cary, NC). The threshold of statistical significance was taken as a value of p < 0 05. All analyses were performed by personnel unaware of the identities of culture conditions. 2.6. Apoptosis Assay. For the apoptosis assay, 50B11 cells were seeded into 24-well plates at a density of 5 × 104 cells/- well. Apoptosis was induced by 0.1 mM hydrogen peroxide. 2. Materials and Methods The degree of apoptosis was assessed using the APOPercen- tage assay (Biocolor, Belfast, Northern Ireland, UK), which was performed according to the manufacturer’s instructions. The APOPercentage assay is a dye uptake assay, which stains only the apoptotic cells with a purple dye [28]. Apoptotic cells were assessed after a 3-hour exposure to hydrogen per- oxide with or without GLP-1RAs (GLP-1, Ex4) and forskolin. Absorption was measured at 550 nm using a microplate reader (VersaMax). 3. Results 3.1. No Cytotoxicity Was Introduced by GLP-1RAs in DRG Neurons. There was no significant cytotoxicity induced after 24 hour exposure to Ex4 (0.1 mM, 1 nM, 10nM, or 100 nM) or GLP-1 (1 nM, 10 nM) (absorbance at 490 nm: control 0 449 ± 0 023, 0.1 nM Ex4 0 414 ± 0 027, 1 nM Ex4 0 355 ± 0 020, 10 nM Ex4 0 433 ± 0 129, 100 nM Ex4 0 444 ± 0 034, 1 nM GLP-1 0 408 ± 0 064, and 10 nM GLP-1 0 424 ± 0 046) (Figure 1). Neurons were also exposed to an ade- nylate cyclase activator, forskolin. The treatment with 10 μM forskolin did not induce any significant difference in cytotoxicity (10 μM forskolin 0 371 ± 0 029). 2.7. Cell Proliferation Assay. An ethynyl deoxyuridine (EdU) incorporation assay was performed using the Click-iT Plus EdU Proliferation Kit (Life Technologies Inc., Gaithersburg, MD). Cells were treated with 10 μM EdU for 24 hours, then harvested, and fixed with 4% paraformaldehyde for 20 minutes. For EdU detection, cells were incubated with Alexa Fluor™488 Azide for 15 minutes and then counter stained with 4′,6-diamidino-2-phenylindole (DAPI) [29, 30]. The rate of proliferating cells was determined by the number of EdU-incorporating cells divided by that of DAPI-positive cells. 3.2. Sensory Neuronal Characteristics in Protein Marker Expressions Were Not Affected by GLP-1RAs. Ex4 or GLP-1 (data not shown) induced no evident changes in the distribu- tion pattern of these sensory neuronal markers compared with neurons without those treatments (Figure 2). 3.3. Cell Viability Was Enhanced in DRG Neurons Cultured with GLP-1RAs. The cell viability of DRG neurons treated with 0.1 mM hydrogen peroxide for 4 hours was signifi- cantly decreased compared with that of cells cultured with no hydrogen peroxide (control 100 ± 8 1%, 0.1 mM hydro- gen peroxide 54 3 ± 2 1, p < 0 01) (Figure 3). However, the treatment with Ex4 or GLP-1 significantly ameliorated cell viability compared with cells with no treatment (0.1 nM Ex4 85 1 ± 13 3, 1 nM Ex4 86 0 ± 6 4, 10 nM Ex4 86 9 ± 6 5, 100 nM Ex4 87 5 ± 3 2, 1 nM GLP-1 94 3 ± 11 7, and 10 nM GLP-1 92 6 ± 2 9). 3. Results The supplementation with 10 μM forskolin also inhibited the decrease of cell viability (84 5 ± 2 6, p < 0 005). 3.3. Cell Viability Was Enhanced in DRG Neurons Cultured with GLP-1RAs. The cell viability of DRG neurons treated with 0.1 mM hydrogen peroxide for 4 hours was signifi- cantly decreased compared with that of cells cultured with no hydrogen peroxide (control 100 ± 8 1%, 0.1 mM hydro- gen peroxide 54 3 ± 2 1, p < 0 01) (Figure 3). However, the treatment with Ex4 or GLP-1 significantly ameliorated cell viability compared with cells with no treatment (0.1 nM Ex4 85 1 ± 13 3, 1 nM Ex4 86 0 ± 6 4, 10 nM Ex4 86 9 ± 6 5, 100 nM Ex4 87 5 ± 3 2, 1 nM GLP-1 94 3 ± 11 7, and 10 nM GLP-1 92 6 ± 2 9). The supplementation with 10 μM forskolin also inhibited the decrease of cell viability (84 5 ± 2 6, p < 0 005). 2.8. Neurite Outgrowth Assay in 50B11 Cells. As it has been verified that the 50B11 neuronal cell line can elongate neur- ites by stimulation with forskolin, the neurite outgrowth induced by GLP-1RAs was also examined to afford collateral evidence of the neuroregenerative ability in DRG neurons. 50B11 cells were plated into 6-well plates at a density of 1 × 104 cells/well. Twenty-four hours after the passage of the cells, cells were unexposed or exposed to the indicated com- pounds for 24 h. Images of the cells were captured by a contrast-phase microscope equipped with a CCD camera and counted for neurite outgrowth which was defined as a process equal to or greater than cell bodies in length [31]. 3.4. SOD-Like Activity Increased in the Sensory Neurons Supplemented with GLP-1RAs. Following exposure to oxida- tive insult with hydrogen peroxide, SOD-like activity 2.9. Cyclic Adenosine Monophosphate (cAMP) Assay. Cellular cAMP production was measured using an enzyme immuno- assay kit (Cayman Chemical, Ann Arbor, MI, USA) [32, 33]. 0.6 0.5 0.4 0.3 0.2 0.1 0.1 0 1 10 10 100 1 Ctrl Exendin-4 GLP-1 Fskln Arbitrary unit (absorbance at 490 nm) Figure 1: Cell cytotoxicity of GLP-1 receptor agonists (GLP-1RAs) in dorsal root ganglion (DRG) neurons. Cytotoxicity was determined 24 hours after treatment with GLP-1RAs or forskolin using LDH assay. 3. Results No significant difference was detected between neurons treated with GLP-1RAs or forskolin and those without treatment (control). Concentrations of GLP-1RAs; exendin-4: 0.1, 1, 10, and 100 nM; GLP-1: 1, 10 nM. Ctrl: control; Fskln: forskolin; error bar: standard deviation. n = 3 in each group. 4 Journal of Diabetes Research 0.6 0.5 0.4 0.3 0.2 0.1 0.1 0 1 10 10 100 1 Ctrl Exendin-4 GLP-1 Fskln Arbitrary unit (absorbance at 490 nm) Figure 1: Cell cytotoxicity of GLP-1 receptor agonists (GLP-1RAs) in dorsal root ganglion (DRG) neurons. Cytotoxicity was determined 24 h ft t t t ith GLP 1RA f k li i LDH N i ifi t diff d t t d b t t t d ith 4 Journal of Diabetes Research Journal of Diabetes Research Figure 1: Cell cytotoxicity of GLP-1 receptor agonists (GLP-1RAs) in dorsal root ganglion (DRG) neurons. Cytotoxicity was determined 24 hours after treatment with GLP-1RAs or forskolin using LDH assay. No significant difference was detected between neurons treated with GLP-1RAs or forskolin and those without treatment (control). Concentrations of GLP-1RAs; exendin-4: 0.1, 1, 10, and 100 nM; GLP-1: 1, 10 nM. Ctrl: control; Fskln: forskolin; error bar: standard deviation. n = 3 in each group. Control (a) TRPV1 (b) Substance P (c) CGRP Exendin-4 (a) TRPV1 (b) Substance P Figure 2: Distribution of sensory neuronal markers in the dorsal root ganglion (DRG) neuron cell line treated with exendin-4. Pictures on the left side are neurons without any treatment. Pictures on the right side are neurons treated with 100 nM exendin-4 for 36 hours. TRPV1: red (a), substance P: green (b), CGRP: green: DAPI (c), scale 100 μm. (b) Substance P (c) CGRP (b) Substance P (c) CGRP (c) CGRP Figure 2: Distribution of sensory neuronal markers in the dorsal root ganglion (DRG) neuron cell line treated with exendin-4. Pictures on the left side are neurons without any treatment. Pictures on the right side are neurons treated with 100 nM exendin-4 for 36 hours. TRPV1: red (a), substance P: green (b), CGRP: green: DAPI (c), scale 100 μm. 3. Results 5 5 Journal of Diabetes Research 120 100 80 60 40 20 0 Cell viability (%) 0.1 1 10 10 100 1 Ctrl Exendin-4 (nM) GLP-1 (nM) Forskolin ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎ # H2O2 (-) 0.01 nM H2O2 0.1 nM H2O2 Figure 3: Cell viability in dorsal root ganglion (DRG) neurons treated with GLP-1 receptor agonists. Cell viability was quantified using 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenenyl)-2-(4-sulfophenyl)-2H-tetrazolium inner salt (MTS). Although hydrogen peroxide (H2O2) significantly decreased the cell viability of DRG neurons, GLP-1 receptor agonists, exendin-4 and GLP-1, and forskolin, an activator of adenylate cyclase, prevent the reduction of cell viability induced by H2O2. White bar: no supplementation of H2O2; hatched bar: 0.01 mM H2O2; filled bar: 0.1 mM H2O2; Ctrl: control; H2O2: hydrogen peroxide; #p < 0 01 versus control without H2O2; ∗p < 0 05 versus control with 0.1 mM H2O2; ∗∗p < 0 005 versus control with 0.1 mM H2O2; error bar: standard deviation. n = 3 in each group. 120 100 80 60 40 20 0 Cell viability (%) 0.1 1 10 10 100 1 Ctrl Exendin-4 (nM) GLP-1 (nM) Forskolin ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎⁎ ⁎ # Figure 3: Cell viability in dorsal root ganglion (DRG) neurons treated with GLP-1 receptor agonists. Cell viability was quantified using 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenenyl)-2-(4-sulfophenyl)-2H-tetrazolium inner salt (MTS). Although hydrogen peroxide (H2O2) significantly decreased the cell viability of DRG neurons, GLP-1 receptor agonists, exendin-4 and GLP-1, and forskolin, an activator of adenylate cyclase, prevent the reduction of cell viability induced by H2O2. White bar: no supplementation of H2O2; hatched bar: 0.01 mM H2O2; filled bar: 0.1 mM H2O2; Ctrl: control; H2O2: hydrogen peroxide; #p < 0 01 versus control without H2O2; ∗p < 0 05 versus control with 0.1 mM H2O2; ∗∗p < 0 005 versus control with 0.1 mM H2O2; error bar: standard deviation. n = 3 in each group. increased in neurons supplemented with GLP-1 or Ex4 (cells with no hydrogen peroxide 40 4 ± 6 7%, 10 nM GLP-1 with 0.1 mM hydrogen peroxide 54 3 ± 5 8, and 100 nM Ex4 with 0.1 mM hydrogen peroxide 59 9 ± 8 4, p < 0 001 versus cells with no hydrogen peroxide in each GLP-1RA-supplemented group) (Figure 4). 3.8. The Adenylate Cyclase/cAMP Pathway Was Not Activated by GLP-1RAs in DRG Neurons. Cyclic AMP levels after stimulation with GLP-1RAs and forskolin were determined. 3. Results After 20 minutes of stimulation with 10 μM for- skolin, cAMP had accumulated in the neurons (control: 5 3 ± 0 3 pmol/ml, 10 μM forskolin: 234 5 ± 6 3, p < 0 0001) (Figure 8). However, no accumulation of cAMP was detected in the neurons treated with Ex4 and GLP-1 (10 nM GLP-1: 3 3 ± 0 4, 100 nM Ex4: 4 0 ± 0 4). Longer exposure to GLP- 1RAs supplemented with a phosphodiesterase inhibitor also generated no significant cAMP accumulation (Supplemental figure available here). 3.5. Apoptosis Was Prevented in the Neurons Supplemented with Ex4. Apoptosis evoked by 0.1 mM hydrogen peroxide was detected using the APOPercentage assay (Figure 5). The degree of apoptosis was significantly decreased in the neurons supplemented with 100 nM Ex4 (absorbance at 550 nm: control 0 304 ± 0 017, 100 nM Ex4 0 250 ± 0 014, p < 0 0001) and 10 μM forskolin (0 199 ± 0 016, p < 0 0001). However, GLP-1 produced no significant change in the apo- ptosis assay (0 299 ± 0 03, p = 0 623). 3.7. Neurite Outgrowth Was Induced with GLP-1RAs. The percentage of neurons with neurite(s) increased in the neu- rons cultured with Ex4 or GLP-1 compared with the control (control 8 7%±5 1%, 100 nM Ex4 28 2 ± 4 0, and 10 nM GLP-1 23 3 ± 6 5, p < 0 0001 for both cases versus control) (Figure 7). 4. Discussion Proliferation rate assessed by EdU assay revealed that both GLP-1 receptor agonists, exendin-4 and GLP-1, suppressed proliferation of DRG neurons. Ctrl: control; Ex-4: cells supplemented with 100 nM exendin-4; GLP-1: cells supplemented with 10 nM GLP-1; ∗p < 0 05 versus control; error bar: standard deviation. n = 9 in each group. Ctrl GLP-1 Ex-4 70 60 40 80 20 0 ⁎ ⁎ Forskolin Ratio of EdU positive neurons (%) v mM H2O2 Figure 4: Superoxide dismutase- (SOD-) like activity in dorsal root ganglion (DRG) neurons treated with glucagon-like peptide- 1 (GLP-1) receptor agonists. Oxidative insult induced by 30- minute treatment with 0.1 mM hydrogen peroxide increased SOD-like activity in the neurons supplemented with 10 nM GLP- 1 or 100 nM exendin-4. ∗p < 0 001 versus no treated cell with H2O2. H2O2: hydrogen peroxide; Ctrl: control; GLP-1: cells supplemented with 10 nM GLP-1; Ex-4: cells supplemented with 100 nM exendin-4. Error bar means standard deviation. n = 6 or 7 in each group. Figure 6: Proliferation rate of dorsal root ganglion (DRG) neurons treated with GLP-1 receptor agonists. Proliferation rate assessed by EdU assay revealed that both GLP-1 receptor agonists, exendin-4 and GLP-1, suppressed proliferation of DRG neurons. Ctrl: control; Ex-4: cells supplemented with 100 nM exendin-4; GLP-1: cells supplemented with 10 nM GLP-1; ∗p < 0 05 versus control; error bar: standard deviation. n = 9 in each group. by activation of the adenylate cyclase/cAMP pathway, no evi- dent accumulation of intracellular cAMP was generated by stimuli with GLP-1RAs. ⁎ PC GLP-1 Ex-4 Forskolin 0.1 mM H2O2 0.3 0.2 0.1 0 ⁎ ⁎ Arbitrary unit (absorbance at 550 nm) H2O2 (-) Figure 5: Apoptosis in dorsal root ganglion (DRG) neurons treated with exendin-4. Apoptosis induced by 3-hour treatment with 0.1 mM hydrogen peroxide was partially inhibited in the neurons supplemented with 100 nM exendin-4 or 10 μM forskolin. ∗p < 0 05 versus control; H2O2: hydrogen peroxide; PC: positive control of apoptosis; GLP-1: glucagon-like peptide-1; Ex-4: exendin-4. Error bar means standard deviation. n = 8 in each group. ⁎ PC GLP-1 Ex-4 Forskolin 0.1 mM H2O2 0.3 0.2 0.1 0 ⁎ ⁎ Arbitrary unit (absorbance at 550 nm) H2O2 (-) GLP-1RAs have previously been shown to promote neur- ite outgrowth in PC12 cells, a rat pheochromocytoma cell type [36, 37]. However, no report has investigated the direct pharmacological function of GLP-1RAs in the cells of the PNS, e.g. 4. Discussion In this decade, drug development targeting GLP-1 signaling has been considered as a prospective therapy of type 2 diabe- tes. A novel GLP-1RA semaglutide which can be orally administered would accelerate popularization of GLP-1RAs in clinical settings [34]. Furthermore, the neuroprotective effects of Ex4 have been already proven in one clinical trial of Parkinson’s disease [35]. Therefore, if the neuroprotective effects of GLP-1RAs are accepted amongst the scientific com- munity, a drug repositioning strategy of GLP-1RAs targeting other diseases will be promising, especially in diabetic com- plications including DPN. 3.6. Cell Proliferation Was Suppressed by GLP-1RAs. The EdU incorporation assay revealed a decrease of proliferation rate of neurons cultured with 10 nM GLP-1 or 100 nM Ex4 (control 87 7%±5 6%, GLP-1 75 5 ± 10 4, and Ex4 74 1 ± 14 4) (Figure 6). However, forskolin had no significant effect on the proliferation rate (forskolin: 86 9 ± 6 2). 3.7. Neurite Outgrowth Was Induced with GLP-1RAs. The percentage of neurons with neurite(s) increased in the neu- rons cultured with Ex4 or GLP-1 compared with the control (control 8 7%±5 1%, 100 nM Ex4 28 2 ± 4 0, and 10 nM GLP-1 23 3 ± 6 5, p < 0 0001 for both cases versus control) (Figure 7). In the current study, we investigated the neuroprotective effects of GLP-1RAs in the DRG neuronal cell line. First, we examined the neurotoxicity of GLP-1RAs in the DRG neu- rons. Second, we examined the effect of GLP-1RA on cell 6 6 Journal of Diabetes Research Ctrl GLP-1 Ex-4 v mM H2O2 70 60 50 40 30 20 10 0 SOD-like activity (%) ⁎ ⁎ H2O2 (-) Ctrl GLP-1 Ex-4 70 60 40 80 20 0 ⁎ ⁎ Forskolin Ratio of EdU positive neurons (%) Figure 6: Proliferation rate of dorsal root ganglion (DRG) neurons treated with GLP-1 receptor agonists. Proliferation rate assessed by EdU assay revealed that both GLP-1 receptor agonists, exendin-4 and GLP-1, suppressed proliferation of DRG neurons. Ctrl: control; Ex-4: cells supplemented with 100 nM exendin-4; GLP-1: cells supplemented with 10 nM GLP-1; ∗p < 0 05 versus control; error bar: standard deviation. n = 9 in each group. Ctrl GLP-1 Ex-4 70 60 40 80 20 0 ⁎ ⁎ Forskolin Ratio of EdU positive neurons (%) Figure 6: Proliferation rate of dorsal root ganglion (DRG) neurons treated with GLP-1 receptor agonists. 4. Discussion DRG neurons, Schwann cells, vascular endothelial cells in peripheral nerves. Some research studies, including our previous study, have already reported in vivo beneficial effects of GLP-1RAs in the disorders of the PNS [20, 38]. The current study would support these beneficial effects through verification of the direct effects of GLP-1RAs on DRG neurons. A number of DPN pathogenesis mechanisms have been postulated in experimental studies, including the polyol pathway, advanced glycation end products, poly ADP- ribose polymerase, the protein kinase C pathway, and oxida- tive stress [39, 40]. In the current study, we chose oxidative stress to represent an in vitro DPN model. To verify the novel in vitro experimental system for investigation of DPN, we confirmed the characteristics of a 50B11 cell line as DRG neurons and induced oxidative insult on the cell line. After the confirmation of no cytotoxicity of GLP-1RAs and forsko- lin in 50B11, we evaluated the neuronal characteristics of the cells. The markers of a primary sensory neuron including TRPV1, substance P, and CGRP were expressed in 50B11 even after the treatment with GLP-1RAs. Furthermore, we successfully performed the neurite outgrowth assay, which is accepted as one of the crucial neuronal assays in a sympathetic-like neuron cell line PC12 [31]. As oxidative stress is one of the primary factors according to the prevailing views of DPN pathogenesis [39], we attempted to produce the pathogenesis utilizing hydrogen peroxide in the neuronal 0.1 mM H2O2 Figure 5: Apoptosis in dorsal root ganglion (DRG) neurons treated with exendin-4. Apoptosis induced by 3-hour treatment with 0.1 mM hydrogen peroxide was partially inhibited in the neurons supplemented with 100 nM exendin-4 or 10 μM forskolin. ∗p < 0 05 versus control; H2O2: hydrogen peroxide; PC: positive control of apoptosis; GLP-1: glucagon-like peptide-1; Ex-4: exendin-4. Error bar means standard deviation. n = 8 in each group. viability, antioxidant enzyme activity, and apoptosis in the DRG neurons. We confirmed enhanced cell viability, increased activity of antioxidant enzyme SOD, and inhibition of apoptosis with GLP-1RA supplementation. We then dem- onstrated that treatment with GLP-1RAs reduced cell prolif- eration and promoted neurite outgrowth of DRG neurons. Although these significant changes were seemed to be evoked 7 Journal of Diabetes Research Ctrl GLP-1 Ex-4 30 10 20 0 ⁎⁎ ⁎⁎ ⁎⁎ Forskolin Ratio of neurite-positive neurons (%) Figure 7: Neurite outgrowth of dorsal root ganglion (DRG) neurons. 4. Discussion The ratio of neurite-positive neurons increased in cells supplemented with GLP-1 receptor agonists, exendin-4 and GLP- 1, as well as cells which were supplemented with forskolin. Ctrl: control; Ex-4: cells supplemented with 100 nM exendin-4; GLP-1: cells supplemented with 10 nM GLP-1; forskolin: cells supplemented with 10 nM forskolin; ∗∗p < 0 001 versus control; error bar: standard deviation.n = 9or15ineachgroup. Ctrl GLP-1 Ex-4 30 10 20 0 ⁎⁎ ⁎⁎ ⁎⁎ Forskolin Ratio of neurite-positive neurons (%) significance of each oxidation mechanism derived from glu- cose, proteins, or lipids is unclear in the pathogenesis of DPN. Therefore, we utilized hydrogen peroxide, which is considered to be one of the most important reactive oxygen species because it crosses membranes and yields hydroxyl radicals via Fenton reaction in cells [42], as an oxidative insult-mimicking oxidative stress in DPN. As a result, hydro- gen peroxide provoked an increase of antioxidant SOD in 50B11 cells. These experiments verified our experimental system as a novel approach to investigate DPN. However, we must recognize some limitations of our study. As it is known that the incretin/adenylate cyclase/- cAMP pathway is critical for insulin secretion in pancreatic beta cells [43] and neuroprotective effect in the CNS neurons [9], we compared pharmacological effects of GLP-1RAs with those of forskolin, an activator of adenylate cyclase, in DRG neurons. We proved the antiapoptotic effect of Ex4 and for- skolin and the decrease of cell proliferation by GLP-1RAs. These findings were consistent with the previous report in which liraglutide, another GLP-1RA, potentiated cell viability and prevented apoptosis viacAMPsignaling inSH-SY5Yneu- roblastoma cells [44]. Furthermore, neurite outgrowth was induced by GLP-1RAs and forskolin. Given that background, these changes appear to indicate the activation of intracellular adenylatecyclase/cAMPsignalingbyGLP-1RAsaswellasfor- skolin. However, unexpectedly, cAMP accumulation was not evident in the neurons cultured with GLP-1RAs for 20 or 120 minutes. This unexpected finding could be caused by the experimental limitation that our cAMP measurement kit was able to examine only the endpoint accumulation of cAMP. The activation of adenylate cyclase induced by GLP-1RAs might be more transient than we expected. Therefore, in the future,wewouldliketomeasurecAMPaccumulationutilizing a real-time detection system. Figure 7: Neurite outgrowth of dorsal root ganglion (DRG) neurons. The ratio of neurite-positive neurons increased in cells supplemented with GLP-1 receptor agonists, exendin-4 and GLP- 1, as well as cells which were supplemented with forskolin. 4. Discussion Ctrl: control; Ex-4: cells supplemented with 100 nM exendin-4; GLP-1: cells supplemented with 10 nM GLP-1; forskolin: cells supplemented with 10 nM forskolin; ∗∗p < 0 001 versus control; error bar: standard deviation.n = 9or15ineachgroup. Ctrl GLP-1 Ex-4 250 5 15 10 0 ⁎⁎ Forskolin 200 Concentration of cAMP (pmol/ml) Figure 8: Intracellular cyclic adenylate monophosphate (cAMP) accumulation in neurons treated with GLP-1 receptor agonists. The cAMP accumulation was measured 20 minutes after exposure to 100 nM exendin-4, 10 nM GLP-1, or 10 μM forskolin. Both GLP-1 receptor agonists, exendin-4 and GLP-1, provoked no significant cAMP accumulation. Ex-4: cells supplemented with 100 nM exendin-4; ∗∗p < 0 001 versus control; error bar: standard deviation. n = 5 or 6 in each group. Ctrl GLP-1 Ex-4 250 5 15 10 0 ⁎⁎ Forskolin 200 Concentration of cAMP (pmol/ml) Furthermore, we should consider scrutinizing other sig- naling pathways which have been reported to be initiated by GLP-1RAs. It is known that p44/42 mitogen-activated protein kinase (also called ERK1/2) can be also activated by GLP-1 in pancreatic beta cells [45]. It is also shown that the antiapoptotic effect of GLP-1 is mediated by ERK1/2 activa- tion in beta cells [46]. Therefore, the antiapoptotic effect shown in the current study might be mediated by activation of ERK1/2 signaling. Another limitation is the immortalization of the neurons. As the DRG neuronal cell line 50B11 cells are immortalized neurons, the differences between nonproliferative neurons collected from mammalians and the genetically engineered neurons should be taken into account. It was reported that an activation of phosphoinositide-3-kinase (PI3K) induced by GLP-1 in the beta cell line accelerated mitosis of the cells [47]. However, in this study, EdU incorporation was decreased by administration of GLP-1RAs. To address this conflict, in the future, we would clarify the involvement of PI3K signaling in sensory neurons [45, 46, 48]. Forskolin Figure 8: Intracellular cyclic adenylate monophosphate (cAMP) accumulation in neurons treated with GLP-1 receptor agonists. The cAMP accumulation was measured 20 minutes after exposure to 100 nM exendin-4, 10 nM GLP-1, or 10 μM forskolin. Both GLP-1 receptor agonists, exendin-4 and GLP-1, provoked no significant cAMP accumulation. Ex-4: cells supplemented with 100 nM exendin-4; ∗∗p < 0 001 versus control; error bar: standard deviation. n = 5 or 6 in each group. 5. Conclusions cell culture. Although, in clinical settings, several factors including dyslipidemia, hyperglycemia, hypertension, and smoking are considered to be risk factors of DPN [41], the This study is the first report to investigate the neuroprotec- tive effects of GLP-1RAs on DRG neurons. The beneficial Journal of Diabetes Research 8 receptor agonists and a cAMP/cGMP-phosphodiesterase inhibitor. (Supplementary Materials) receptor agonists and a cAMP/cGMP-phosphodiesterase inhibitor. (Supplementary Materials) receptor agonists and a cAMP/cGMP-phosphodiesterase inhibitor. (Supplementary Materials) effects of GLP-1RAs in DPN might be attributable to the direct neuroprotective effects of GLP-1RAs on DRG neurons through protection from cellular oxidative insult. Acknowledgments This research was supported in part by the Grant-in-Aid for Scientific Research (15H06720) from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) and Grants for Young Researchers from the Japan Association for Diabetes Education and Care. TH was sup- ported by the Manpei Suzuki Diabetes Foundation, Japan Diabetes Foundation, and Aichi Medical University Aikei- kai. The authors wish to acknowledge helpful comments and discussions from Prof. Eva L. Feldman. The authors would like to thank Prof. A. Höke for kindly providing 50B11 neuronal cells and Crystal Pacut, Carey Backus, and John M. Hayes for preparing the cell culture system using the 50B11 neuronal cell line. [11] M. G. Sabbir and P. Fernyhough, “Muscarinic receptor antag- onists activate ERK-CREB signaling to augment neurite outgrowth of adult sensory neurons,” Neuropharmacology, vol. 143, pp. 268–281, 2018. [12] N. K. Huang, Y. W. Lin, C. L. Huang, R. O. Messing, and Y. Chern, “Activation of protein kinase A and atypical protein kinase C by A(2A) adenosine receptors antagonizes apoptosis due to serum deprivation in PC12 cells,” The Journal of Biolog- ical Chemistry, vol. 276, no. 17, pp. 13838–13846, 2001. [13] X. M. Wu, Q. Y. Ou, W. Zhao, J. Liu, and H. Zhang, “The GLP- 1 analogue liraglutide protects cardiomyocytes from high glucose-induced apoptosis by activating the Epac-1/Akt path- way,” Experimental and Clinical Endocrinology & Diabetes, vol. 122, no. 10, pp. 608–614, 2014. Conflicts of Interest [9] M. Kawatani, Y. Yamada, and M. Kawatani, “Glucagon-like peptide-1 (GLP-1) action in the mouse area postrema neu- rons,” Peptides, vol. 107, pp. 68–74, 2018. The authors declare that there is no conflict of interest regarding the publication of this paper. [10] A. Piiper, I. Dikic, M. P. Lutz et al., “Cyclic AMP induces trans- activation of the receptors for epidermal growth factor and nerve growth factor, thereby modulating activation of MAP kinase, Akt, and neurite outgrowth in PC12 cells,” The Journal of Biological Chemistry, vol. 277, no. 46, pp. 43623–43630, 2002. Data Availability [8] X. Xu, J. Chen, L. Hu et al., “Liraglutide regulates the viability of pancreatic α-cells and pancreatic β-cells through cAMP-PKA signal pathway,” Life Sciences, vol. 195, pp. 87– 94, 2018. The whole data used to support the findings of this study are available from the corresponding author upon request. References g p At the same time, we successfully verified the novel in vitro experimental system for investigation of DPN. [1] J. R. Singleton and A. G. Smith, “The diabetic neuropathies: practical and rational therapy,” Seminars in Neurology, vol. 32, no. 3, pp. 196–203, 2012. Abbreviations cAMP: Cyclic adenosine monophosphate CCD: Charge-coupled device CGRP: Calcitonin gene-related peptide CNS: Central nervous system DAPI: 4′,6-Diamidino-2-phenylindole DRG: Dorsal root ganglion DPN: Diabetic polyneuropathy EdU: Ethynyl deoxyuridine Ex4: Exendin-4 GLP-1: Glucagon-like peptide-1 GLP-1RA: GLP-1 receptor agonist GSIS: Glucose-stimulated insulin secretion IBMX: 3-Isobutyl-1-methyl xanthine LDH: Lactate dehydrogenase MTS: 3-(4,5-Dimethylthiazol-2-yl)-5-(3- carboxymethoxyphenenyl)-2-(4-sulfophenyl)- 2H-tetrazolium inner salt PNS: Peripheral nervous system SOD: Superoxide dismutase TRPV1: Transient receptor potential vanilloid subfamily member 1. [2] S. Genuth, “Insights from the diabetes control and complica- tions trial/epidemiology of diabetes interventions and compli- cations study on the use of intensive glycemic treatment to reduce the risk of complications of type 1 diabetes,” Endocrine Practice, vol. 12, Supplement 1, pp. 34–41, 2006. [3] D. Yabe, Y. Seino, and Y. Seino, “Incretin concept revised: the origin of the insulinotropic function of glucagon-like peptide- 1 - the gut, the islets or both?,” Journal of Diabetes Investiga- tion, vol. 9, no. 1, pp. 21–24, 2018. [4] E. K. Williams, R. B. Chang, D. E. Strochlic, B. D. Umans, B. B. Lowell, and S. D. Liberles, “Sensory neurons that detect stretch and nutrients in the digestive system,” Cell, vol. 166, no. 1, pp. 209–221, 2016. [5] Y. Li, S. Chigurupati, H. W. Holloway et al., “Exendin-4 ame- liorates motor neuron degeneration in cellular and animal models of amyotrophic lateral sclerosis,” PLoS One, vol. 7, no. 2, article e32008, 2012. [6] S. Yamane and N. Inagaki, “Regulation of glucagon-like peptide-1 sensitivity by gut microbiota dysbiosis,” Journal of Diabetes Investigation, vol. 9, no. 2, pp. 262–264, 2018. [7] T. Okawa, H. Kamiya, T. Himeno et al., “Sensory and motor physiological functions are impaired in gastric inhibitory poly- peptide receptor-deficient mice,” Journal of Diabetes Investiga- tion, vol. 5, no. 1, pp. 31–37, 2014. Supplementary Materials Zhu et al., “Glucagon like peptide- 1-directed human embryonic stem cells differentiation into insulin-producing cells via hedgehog, cAMP, and PI3K path- ways,” Pancreas, vol. 39, no. 3, pp. 315–322, 2010. [34] M. Davies, T. R. Pieber, M. L. Hartoft-Nielsen, O. K. H. Han- sen, S. Jabbour, and J. Rosenstock, “Effect of oral semaglutide compared with placebo and subcutaneous semaglutide on gly- cemic control in patients with type 2 diabetes: a randomized clinical trial,” JAMA, vol. 318, no. 15, pp. 1460–1470, 2017. [20] T. Himeno, H. Kamiya, K. Naruse et al., “Beneficial effects of exendin-4 on experimental polyneuropathy in diabetic mice,” Diabetes, vol. 60, no. 9, pp. 2397–2406, 2011. [35] D. Athauda, K. Maclagan, S. S. Skene et al., “Exenatide once weekly versus placebo in Parkinson's disease: a randomised, double-blind, placebo-controlled trial,” The Lancet, vol. 390, no. 10103, pp. 1664–1675, 2017. [21] R. Pop-Busui, L. Ang, C. Holmes, K. Gallagher, and E. L. Feld- man, “Inflammation as a therapeutic target for diabetic neu- ropathies,” Current Diabetes Reports, vol. 16, no. 3, p. 29, 2016. [36] R. Kimura, M. Okouchi, H. Fujioka et al., “Glucagon-like peptide-1 (GLP-1) protects against methylglyoxal-induced PC12 cell apoptosis through the PI3K/Akt/mTOR/GCLc/re- dox signaling pathway,” Neuroscience, vol. 162, no. 4, pp. 1212–1219, 2009. [22] E. Akude, E. Zherebitskaya, S. K. R. Chowdhury, D. R. Smith, R. T. Dobrowsky, and P. Fernyhough, “Diminished superoxide generation is associated with respiratory chain dysfunction and changes in the mitochondrial proteome of sensory neu- rons from diabetic rats,” Diabetes, vol. 60, no. 1, pp. 288–297, 2011. [37] T. Perry, D. K. Lahiri, D. Chen et al., “A novel neurotrophic property of glucagon-like peptide 1: a promoter of nerve growth factor-mediated differentiation in PC12 cells,” Journal of Pharmacology and Experimental Therapeutics, vol. 300, no. 3, pp. 958–966, 2002. [23] A. P. Kellogg, T. D. Wiggin, D. D. Larkin, J. M. Hayes, M. J. Stevens, and R. Pop-Busui, “Protective effects of cycloo xygenase-2 gene inactivation against peripheral nerve dysfunc- tion and intraepidermal nerve fiber loss in experimental diabe- tes,” Diabetes, vol. 56, no. 12, pp. 2997–3005, 2007. [38] T. Perry, H. W. Holloway, A. Weerasuriya et al., “Evidence of GLP-1-mediated neuroprotection in an animal model of pyridoxine-induced peripheral sensory neuropathy,” Experi- mental Neurology, vol. 203, no. 2, pp. 293–301, 2007. [24] L. M. Hinder, C. Figueroa-Romero, C. Supplementary Materials Supplemental figure: intracellular cyclic adenylate monopho- sphate (cAMP) accumulation in neurons treated with GLP-1 [14] C. Wang, Q. Li, W. Wang et al., “GLP-1 contributes to increases in PGC-1α expression by downregulating miR-23a Journal of Diabetes Research 9 induced by oxidative stress,” Neurochemical Research, vol. 37, no. 8, pp. 1631–1638, 2012. to reduce apoptosis,” Biochemical and Biophysical Research Communications, vol. 466, no. 1, pp. 33–39, 2015. [29] A. Salic and T. J. Mitchison, “A chemical method for fast and sensitive detection of DNA synthesis in vivo,” Proceedings of the National Academy of Sciences of the United States of Amer- ica, vol. 105, no. 7, pp. 2415–2420, 2008. [15] Y. Zhao, H. Li, F. Fang et al., “Geniposide improves repeated restraint stress-induced depression-like behavior in mice by ameliorating neuronal apoptosis via regulating GLP-1R/AKT signaling pathway,” Neuroscience Letters, vol. 676, pp. 19–26, 2018. [30] A. Moutal, L. S. Villa, S. K. Yeon et al., “CRMP2 phosphoryla- tion drives glioblastoma cell proliferation,” Molecular Neuro- biology, vol. 55, no. 5, pp. 4403–4416, 2018. [16] K. Kapodistria, E. P. Tsilibary, E. Kotsopoulou, P. Moustardas, and P. Kitsiou, “Liraglutide, a human glucagon-like peptide-1 analogue, stimulates AKT-dependent survival signalling and inhibits pancreatic β-cell apoptosis,” Journal of Cellular and Molecular Medicine, vol. 22, no. 6, pp. 2970–2980, 2018. [31] N. M. Radio, J. M. Breier, T. J. Shafer, and W. R. Mundy, “Assessment of chemical effects on neurite outgrowth in PC12 cells using high content screening,” Toxicological Sci- ences, vol. 105, no. 1, pp. 106–118, 2008. [17] S. Sasaki, T. Miyatsuka, T. A. Matsuoka et al., “Activation of GLP-1 and gastrin signalling induces in vivo reprogramming of pancreatic exocrine cells into beta cells in mice,” Diabetolo- gia, vol. 58, no. 11, pp. 2582–2591, 2015. [32] P. Pradelles, J. Grassi, D. Chabardes, and N. Guiso, “Enzyme immunoassays of adenosine cyclic 3′,5′-monophosphate and guanosine cyclic 3′,5′-monophosphate using acetylcholinester- ase,” Analytical Chemistry, vol. 61, no. 5, pp. 447–453, 1989. [18] A. Suzuki, H. Nakauchi, and H. Taniguchi, “Glucagon-like peptide 1 (1-37) converts intestinal epithelial cells into insulin-producing cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 9, pp. 5034–5039, 2003. [33] T. Iwai, S. Ito, K. Tanimitsu, S. Udagawa, and J. I. Oka, “Glu- cagon-like peptide-1 inhibits LPS-induced IL-1β production in cultured rat astrocytes,” Neuroscience Research, vol. 55, no. 4, pp. 352–360, 2006. [19] H. Hui, Y. G. Tang, L. Supplementary Materials Pacut et al., “Long-- chain acyl coenzyme A synthetase 1 overexpression in primary cultured Schwann cells prevents long chain fatty acid-induced oxidative stress and mitochondrial dysfunction,” Antioxidants & Redox Signaling, vol. 21, no. 4, pp. 588–600, 2014. [39] R. Pop-Busui, A. J. M. Boulton, E. L. Feldman et al., “Diabetic neuropathy: a position statement by the American Diabetes Association,” Diabetes Care, vol. 40, no. 1, pp. 136–154, 2017. [25] M. Kobayashi and D. W. Zochodne, “Diabetic neuropathy and the sensory neuron: new aspects of pathogenesis and their treatment implications,” Journal of Diabetes Investigation, vol. 9, no. 6, pp. 1239–1254, 2018. [40] S. Sifuentes-Franco, F. P. Pacheco-Moisés, A. D. Rodríguez-- Carrizalez, and A. G. Miranda-Díaz, “The role of oxidative stress, mitochondrial function, and autophagy in diabetic polyneuropathy,” Journal Diabetes Research, vol. 2017, article 1673081, 15 pages, 2017. [26] W. Chen, R. Mi, N. Haughey, M. Oz, and A. Hoke, “Immortal- ization and characterization of a nociceptive dorsal root ganglion sensory neuronal line,” Journal of the Peripheral Ner- vous System, vol. 12, no. 2, pp. 121–130, 2007. [41] B. C. Callaghan, H. T. Cheng, C. L. Stables, A. L. Smith, and E. L. Feldman, “Diabetic neuropathy: clinical manifestations and current treatments,” Lancet Neurology, vol. 11, no. 6, pp. 521–534, 2012. [27] A. V. Peskin and C. C. Winterbourn, “A microtiter plate assay for superoxide dismutase using a water-soluble tetrazolium salt (WST-1),” Clinica Chimica Acta, vol. 293, no. 1-2, pp. 157–166, 2000. [42] J. A. Imlay, S. M. Chin, and S. Linn, “Toxic DNA damage by hydrogen peroxide through the Fenton reaction in vivo and in vitro,” Science, vol. 240, no. 4852, pp. 640–642, 1988. [43] M. Iwasaki, K. Minami, T. Shibasaki, T. Miki, J. I. Miyazaki, and S. Seino, “Establishment of new clonal pancreatic β-cell [28] A. C. Uguz and M. Naziroglu, “Effects of selenium on calcium signaling and apoptosis in rat dorsal root ganglion neurons Journal of Diabetes Research 10 lines (MIN6-K) useful for study of incretin/cyclic adenosine monophosphate signaling,” Journal of Diabetes Investigation, vol. 1, no. 4, pp. 137–142, 2010. [44] Y. Li, M. Bader, I. Tamargo et al., “Liraglutide is neurotrophic and neuroprotective in neuronal cultures and mitigates mild traumatic brain injury in mice,” Journal of Neurochemistry, vol. 135, no. 6, pp. 1203–1217, 2015. [45] D. Arnette, T. B. Gibson, M. C. Supplementary Materials Lawrence et al., “Regulation of ERK1 and ERK2 by glucose and peptide hormones in pancre- atic beta cells,” The Journal of Biological Chemistry, vol. 278, no. 35, pp. 32517–32525, 2003. [46] J. Quoyer, C. Longuet, C. Broca et al., “GLP-1 mediates antia- poptotic effect by phosphorylating Bad through a beta-arrestin 1-mediated ERK1/2 activation in pancreatic beta-cells,” The Journal of Biological Chemistry, vol. 285, no. 3, pp. 1989– 2002, 2010. [47] J. Buteau, R. Roduit, S. Susini, and M. Prentki, “Glucagon-like peptide-1 promotes DNA synthesis, activates phos- phatidylinositol 3-kinase and increases transcription factor pancreatic and duodenal homeobox gene 1 (PDX-1) DNA binding activity in beta (INS-1)-cells,” Diabetologia, vol. 42, no. 7, pp. 856–864, 1999. [48] S. Park, X. Dong, T. L. Fisher et al., “Exendin-4 uses Irs2 sig- naling to mediate pancreatic β cell growth and function,” Jour- nal of Biological Chemistry, vol. 281, no. 2, pp. 1159–1168, 2006.
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Triterpenoids from Gymnema sylvestre and Their Pharmacological Activities
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Molecules 2014, 19, 10956-10981; doi:10.3390/molecules190810956 molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Triterpenoids from Gymnema sylvestre and Their Pharmacological Activities † Giovanni Di Fabio 1, Valeria Romanucci 1, Anna De Marco 2 and Armando Zarrelli 1,* 1 Department of Chemical Sciences, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mails: difabio@unina.it (G.D.F.); valeria.romanucci@unina.it (V.R.) 2 Department of Biology, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mail: anna.demarco@unina.it † In honour of Professor Lucio Previtera’s 70th birthday. * Author to whom correspondence should be addressed; E-Mail: zarrelli@unina.it; Tel.: +39-081-674472; Fax: +39-081-674393. Received: 13 May 2014; in revised form: 3 July 2014 / Accepted: 4 July 2014 / Published: 28 July 2014 OPEN ACCESS Molecules 2014, 19, 10956-10981; doi:10.3390/molecules190810956 Review Giovanni Di Fabio 1, Valeria Romanucci 1, Anna De Marco 2 and Armando Zarrelli 1,* ovanni Di Fabio 1, Valeria Romanucci 1, Anna De Marco 2 and Armando Zarrelli 1,* 1 Department of Chemical Sciences, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mails: difabio@unina.it (G.D.F.); valeria.romanucci@unina.it (V.R.) 1 Department of Chemical Sciences, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mails: difabio@unina.it (G.D.F.); valeria.romanucci@unina.it (V.R.) 2 Department of Biology, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mail: anna.demarco@unina.it 2 Department of Biology, University Federico II, Complesso Universitario Monte S. Angelo, Via Cintia 4, IT-80126 Napoli, Italy; E-Mail: anna.demarco@unina.it † In honour of Professor Lucio Previtera’s 70th birthday. 1. Introduction: Medicinal Plants and Their Secondary Metabolites Plants form an important part of our diet, and plant constituents and their nutritional value have been intensively studied for decades. In addition to primary metabolites (carbohydrates, lipids and amino acids), plants are able to synthesise a wide variety of compounds referred to as secondary metabolites. These are defined as compounds that do not have a well-recognised role in the essential processes of the plant but play an important role in the interactions of the plant with the environment [1]. Despite the term “secondary”, these compounds confer selective advantages to plant species by suppressing the growth of weeds; providing protection from predators, pathogens and abiotic stress; attracting pollinators, providing benefits with respect to animals and microorganisms; and serving as signals in interactions with other plants [2–8]. In addition, they play a role at the cellular level as growth regulators, modulators of gene expression and signal transducers [9]. Because plants are estimated to produce over 200,000 metabolites [10], research into new natural substances that can be used in the pharmaceutical, agrochemical and agro-industrial production of drugs, biopesticides, and food additives has grown in recent years. The yield of these compounds is often low (less than 1% dry weight) and depends greatly on the physiological and developmental stage of the plant [11]. Of the more than 400,000 species of plants, the phytochemicals of only a small percentage have been studied, and of these phytochemicals, only a small percentage has been examined for their biological properties because this research is complex and expensive. Two-thirds of medicinal plants are collected from the wild, but in Europe, only approximately 10% of plants used for commercial purposes are cultivated [12]. Currently one fourth of all prescribed pharmaceuticals in industrialised countries contains compounds that are directly or indirectly, via semi-synthesis, derived from plants. Furthermore, 11% of the 252 drugs considered as basic and essential by WHO are exclusively derived from flowering plants [13]. The global market for plant-derived drugs has been estimated to be approximately 30.69 billion USD annually over the last decade, and phytochemicals such as terpenes and steroids represent the most significant fraction with estimated annual sales of 12.4 billion USD [14]. Higher plants are rich source of bioactive constituents or phyto-pharmaceuticals used in the pharmaceutical industry. Many of these pharmaceuticals are still in use today, and often, useful synthetic substitutes have been found that possess the same efficacy and pharmacological specificity [15]. † In honour of Professor Lucio Previtera’s 70th birthday. † In honour of Professor Lucio Previtera’s 70th birthday. * Author to whom correspondence should be addressed; E-Mail: zarrelli@unina.it; Tel.: +39-081-674472; Fax: +39-081-674393. * Author to whom correspondence should be addressed; E-Mail: zarrelli@unina.it; Tel.: +39-081-674472; Fax: +39-081-674393. Received: 13 May 2014; in revised form: 3 July 2014 / Accepted: 4 July 2014 / Published: 28 July 2014 Abstract: Because plants are estimated to produce over 200,000 metabolites, research into new natural substances that can be used in the pharmaceutical, agrochemical and agro-industrial production of drugs, biopesticides and food additives has grown in recent years. The global market for plant-derived drugs over the last decade has been estimated to be approximately 30.69 billion USD. A relevant specific example of a plant that is very interesting for its numerous pharmacological properties, which include antidiabetic, anticarcinogenic, and neuroprotective effects is Gymnema sylvestre, used as a medicinal plant in Asia for thousands of years. Its properties are attributed to triterpenoidic saponins. In light of the considerable interest generated in the chemistry and pharmacological properties of G. sylvestre triterpenes and their analogues, we have undertaken this review in an effort to summarise the available literature on these promising bioactive natural products. The review will detail studies on the isolation, chemistry and bioactivity of the triterpenoids, which are presented in the tables. In particular the triterpenoids oxidised at C-23; their isolation, distribution in different parts of the plant, and their NMR spectral data; their names and physico-chemical characterisation; and the biological properties associated with these compounds, with a focus on their potential chemotherapeutic applications. Molecules 2014, 19 Molecules 2014, 19 Molecules 2014, 19 10957 Keywords: Gymnema sylvestre; triterpenoids; oleanes; pharmacological activities; phytochemistry 1.1. Terpenes and Terpenoids Among the many biologically active substances of plant origin, a great deal of attention has been paid to terpenes, which are composed of isoprene subunits. More than 30,000 terpenes have been isolated thus far [17]. Terpenes are classified as mono-, sesqui-, di-, ses-, tri-, and tetraterpenes according to the number of isoprenoid units. The carbon skeleton may be acyclic, or they may possess mono-, bi-, tri-, tetra-, and pentacyclic structures [18–24]. Terpenes are of widespread and can be found in all organisms, both prokaryotic and eukaryotic. However, most bioactive terpenes have been detected in higher plants. Whereas mono- and sesquiterpenes are predominantly found in essential plant oils, the higher terpenes, including triterpenes, are found in balsams and resins [25,26]. Triterpenoids in their free form (sapogenins), bound to glycosides (saponins) or acetylated are particularly important and are ubiquitous throughout the plant kingdom; both in vitro and in vivo studies have shown that they also have important biological functions. Because of their relatively complex structures, terpenoids are usually referred to by trivial names instead of using systematic IUPAC nomenclature. 1. Introduction: Medicinal Plants and Their Secondary Metabolites In addition to the field of pharmacology, secondary metabolites from plant extracts can also be used in the agrochemical sector. The recent interest in chemical to be used as defences for agricultural crops with less impact on the environment from operators in the sector and consumers has stimulated research into the isolation of new molecules of natural origin for use as biopesticides [9]. Over 60% of cancer drugs and 66% of antimicrobial compounds on the market today (including antibacterial, antifungal and antiviral compounds) are natural products or are derived from them [16]. Despite the difficulties associated with the study and isolation of phytochemicals, they have the advantage of greater efficacy than synthetic drugs for some diseases and a lower incidence of side Molecules 2014, 19 10958 effects. Additionally, a large percentage of the world’s population has no access to conventional pharmacological treatments. The different reasons mentioned above describe a situation in which research has ample space to improve and simplify extraction protocols and increase the levels of metabolites in plants of interest, through classical techniques of genetic improvement or innovative biotechnological approaches aimed at modifying biosynthetic pathways, in addition to testing substances already isolated for the widest possible spectrum of biological activities. 2. Triterpenoids from Gymnema sylvestre and Their Pharmacological Activities The triterpenoidic saponins also act against insect pests by forming an insoluble complex with cholesterol, which is the precursor in the biosynthesis of the hormone ecdysone. Because cholesterol is the only source of sterols for the majority of the insects and a main energy supply, the cholesterol linked to saponins cannot be used, which leads to insect death [29]. A relevant specific example of a plant that is very interesting for its numerous pharmacological properties, which include antidiabetic, anticarcinogenic, and neuroprotective effects is Gymnema sylvestre, used as a medicinal plant in Asia for thousands of years. Its properties are attributed to triterpenoidic saponins. In light of the considerable interest generated in the chemistry and pharmacological properties of G. sylvestre triterpenes and their analogues, we have undertaken this review in an effort to summarise the available literature on these promising bioactive natural products. The review will detail studies on the isolation, chemistry and bioactivity of the triterpenoids, which are presented in the following tables: triterpenoids oxidised at C-23 (Table 1 and Figure 1); their isolation, distribution in different parts of the plant, and their NMR spectral data (Table 2); their names and physico-chemical characterisation (Tables 3 and 4, respectively); and, finally, the biological properties associated with these compounds, with a focus on their potential chemotherapeutic applications (Table 5). 1.2. Classification of Terpenoids and Their Biological Effects Based on the number of sugars present, saponins are classified as monodesmosides, with a single saccharide chain generally linked to C-3; bidesmosides, with two sugar chains linked to C-3 and C-28; and tridesmosides, with three saccharide chains. The sugars can be linear or branched; the most widespread saccharides in triterpenoid saponins are D-glucose, D-galactose, L-arabinose, L-rhamnose, D-xylose, D-fucose and glucuronic acid [27]. The biological effects of such terpenoids are very different, and can be summarised as follows: antitumor, antiviral, antidiabetic, anti-inflammatory, hepatoprotective, analgesic, antimicrobial, antimycotic, virostatic, immunomodulatory, and tonic activities [17]. A few compounds, such as corosolic acid, a dietary supplement against diabetes, are already on the market, and several others are in clinical trials or are to be launched soon. Many triterpenes exhibit significant biological activity, but several triterpenoids possess haemolytic and cytostatic properties that restrict their pharmaceutical use. To overcome these limitations and to expand the range of usable triterpenes, transformation of the compound by chemical or biotechnological techniques is possible. They are also of extreme interest to the agrochemical field because they are involved in the defence mechanisms of plants. Their biological activities are mainly related to interactions with cell membranes. The main mechanism of action of saponins against fungi appears to be related to their ability to form complexes with sterols in fungal membranes by altering the membrane integrity [28]. Molecules 2014, 19 Molecules 2014, 19 10959 Biological Effects of Triterpenoids Diabetes mellitus (DM) is a disease caused by a deficiency or diminished effectiveness of endogenous insulin. It is characterised by hyperglycaemia, deranged metabolism and sequelae predominantly affecting the vasculature. There are two main types of diabetes mellitus: Type 1, in which the body does not produce sufficient insulin; Type 2, due to the resistance to the insulin, often initially with normal or increased levels of circulating insulin. In the UK, there were 2.9 million people with diabetes in 2011. It is estimated that 5 million people will have diabetes in the UK by 2025. It is also estimated that there are approximately 850,000 people who have undiagnosed diabetes. The average prevalence of diabetes in the UK is 4.45% of the population, but there are variations between countries and regions. The proportion of people with diabetes increases with age. However, the incidence of diabetes is increasing in all age groups. Type 1 diabetes is increasing in children (especially those < 5 years of age), and type 2 diabetes is increasing, particularly in black and minority ethnic groups. In general, the prevalence of diabetes mellitus and its percentages in different populations is almost the same throughout the world. Compounds 1−12, 15−20, 39−43 were tested for their antisweet activity. The antisweet activity was tested on a group of volunteers who held a solution of the tested compounds (5 mL of the specific compounds solution in 0.01 M NaHCO3) in their mouth for 3 min, spat, and rinsed with distilled water. The subjects were directed to taste 10 sucrose solutions from 0.1 to 1.0 M. The activity of the compound tested was expressed at the maximum concentration of a sucrose solution whose sweetness was suppressed completely. 0.5 mM of a solution of gymnemic acids I (1) and II (2) led a complete suppression of sweetness induced by 0.4 mM sucrose. More precisely, application of a 1 mM solution of 1 and 2 orally led to a complete suppression of sweetness induced by 0.2 and 0.4 M sucrose, Molecules 2014, 19 10960 respectively [30]. A 1.0 mM solution of gymnemic acids III (3), IV (4), V (5) and VI (6) led to a complete suppression of sweetness induced by 0.4 mM sucrose [31,32]. The difference between the structures of gymnemic acid III and gymnemic acid IV is only the absence or presence of a double bond in the acyl group. Kurihara et al. Biological Effects of Triterpenoids [33] have suggested that the acyl groups might play an important role in the generation of the antisweet activity. However, it seems that acyl groups only increase the antisweet activity, but are not essential [34]. A 0.5 mM solution of gymnemic acids VIII (8), IX (9) and X (10) leads to a complete suppression of the sweet taste of 0.2 M sucrose. The results are similar to those for gymnemic acids III and IV, which are acylated at C21 [35]. In general, it has been found that the antisweet activity of these saponins decreases with the decreasing number of acyl groups. In fact, a 0.5 mM solution of each of the gymnemic acids XI (11) and XII (12), as with gymnemic acids I and II, are able to suppress the perception of sweetness due to 0.4 M sucrose. The results suggest the antisweet activity of a triterpenes is directly proportional to the number of acyl groups present in the molecule [35]. A 0.5 M solution of gymnemic acids XV (15), XVI (16), XVII (17), and XVIII (18) completely suppressed the sweet taste of 0.4 M sucrose, showing the same activity of gymnemic acids I and II [36]. Gymnemic acid VII (7), prosapogenin (20) and gymnemagenin (19) were not active at all [30–32]. In particular, gymnemic acid IV is a multidirectional antihyperglycaemic agent with antisweet activity [31], glucose uptake inhibitory activity, and gut glycosidase inhibitory action [37]. Moreover, the blood glucose lowering effect of gymnemic acid IV was higher than glibenclamide, which was used as a control in streptozotocin-diabetic mice [29]. Most of these pharmacological effects may synergistically contribute to alleviating type 2 diabetes-related symptoms. Thus, gymnemic acid IV may be used as a prophylactic against diabetes through its different mechanisms of action [38]. A 1.0 mM solution of compounds 41–43 completely reduced the perceived sweetness of 0.1 M sucrose; these results correspond to half of the activity of gymnemic acids I−VI. Compounds 39 and 40 were not active [34]. The literature suggests that the pharmacological effects of G. sylvestre extract or its mixture of triterpenoids occur through mechanisms such as modulation of incretin activity, stimulation of insulin secretion and release, regeneration of β-endocrinocyte Langerhans islets, activation of enzymes responsible for glucose utilisation, reduction of glucose and fatty acid assimilation in the small intestine, and interference with the sensation of sweetness. Molecules 2014, 19 Molecules 2014, 19 10961 was correlated with the hypoglycaemic effect was observed in experimental animals with an experimental form of immunodependent DM during a study of G. sylvestre activity. In Russia, tests of mixtures consisting of G. sylvestre extracts of various purities (certified preparations of G. sylvestre dry extracts) in various concentrations in combination with extracts that intensify the antioxidant effect (grape stem) and possess immunomodulating and regenerative properties are underway. More than 30 different combinations have been investigated in detail in vitro and in vivo. Considering these facts, it is obvious that G. sylvestre is a source of biologically active substances. The very broad spectrum of pharmacological activity for G. sylvestre indicates that the use of its extract or its components at various doses and in various combinations improves the condition of latent forms of DM (prediabetes), treats insulin-independent DM, prolongs the action of hypoglycaemic preparations, and regenerates β-cells for insulin-dependent and insulin-independent DM [45]. Despite the results of these studies, only a few metabolites of G. sylvestre have been tested for their effects on glucose uptake. Among them, gymnemosaponin V (43) and gymnemic acids I-IV increase the amount of insulin in blood plasma in mice with streptozotocin-induced DM after their administration [35,38]. The presence of these compounds, but perhaps not only them, could explain that, when G. sylvestre extract was used for 21 days after streptozotocin intoxication, it reliably reduced the levels of glucose and HbAlc in blood plasma, increased the insulin content, and normalised the concentration of high-density lipoproteins (HDL) [28]. The inhibitory activity of some triterpene glycosides was examined to determine their impact on the increase in serum glucose level in oral glucose-loaded rats. Gymnemoside-b (33) and gymnemic acids III, V, and VII were found to exhibit slight inhibitory activity towards the increase of glucose absorption after a single administration of 100 mg/kg, but gymnemic acid I and gymnemasaponin, lacked this activity at the same dose. Although the above compounds are included in one of three categories (acylated polyhydroxyoleanane 3-O-glucuronide) of glucose absorption inhibitors, their activity is much less than that of their analogues [46]. Gymnemic acids II and III showed potent inhibitory activities on glucose uptake, which were almost equivalent to those of oleanolic acid-3-O-glucuronide and Escin Ia. Gymnemoside-f (37), gymnemic acid IV and gymnemasapoin V were also found to inhibit glucose uptake, while gymenomosides-c (34), -d (35), and -e (36) lacked this activity. Biological Effects of Triterpenoids It is known that hormones that regulate the formation and secretion of hormones by pancreas islets are activated in response to the entry of food into the intestine. Release of specific and well-known gastrointestinal hormones (GIP) into the portal vein in response to the intraduodenal administration of D-glucose in the presence of G. sylvestre extract enriched in gymnemic acids/triterpenoids by inhibitors of certain proposed glucose sensors and transporters in the intestinal lumen has been studied experimentally [39]. Intraduodenal administration of D-glucose caused a dose-dependent increase in the concentration of portal immunoreactive GIP. This suggests that the extract of G. sylvestre leaves or its constituents increases GIP secretion by endocrine k-cells in the small intestine [40]. The literature suggests that the hypoglycaemic activity of G. sylvestre is due to stimulating the release of insulin (and possibly the regeneration of Langerhans islet β-cells) and enzymes responsible for glucose utilisation and inhibition of glucose absorption in the bowel [27,41–43]. This means that the hypertrophy of β-endocrinocytes most likely occurs due to the effect of G. sylvestre on the increased secretion of GIP [44]. An autogenic hormone in the blood that Molecules 2014, 19 10962 In recent years interest in cancer prevention has grown steadily and urgently, therefore it would be particularly important to identify molecules that are able to prevent or avoid the processes of carcinogenesis due to substances of which substantially we can’t do without or can’t avoid in our daily life. Several anti-inflammatory substances are well known to inhibit the action of tumour promoters in the mouse skin carcinogenesis. The compound 46 was found to inhibit the inflammatory reaction induced by tumour promoters. This anti-inflammatory activity may play an important role in the mechanism of antitumor promotion as it has already been demonstrated [48,49]. The effects of compound 46 on the growth of HepG2 cells were measured. Its inhibitory effect was remarkably effective (ID50 was 25 µM) as it induced apoptosis at high dose, and with a dose-dependent manner [50,51]. Moreover, the application of antitumor-promoting triterpenoids is highly promising for protection against tumour formation, and many triterpenoids were tested in vitro and in vivo against the action of tumour promoter, 12-O-tetradecanoylphorbol 13-acetate (TPA) induced Epstein-Barr virus (EBV) activation in Raji cells. Recently, ursolic and oleanolic acids have been reported to be inhibitors of TPA and the dose responses of the acids were very similar to those of the antitumor promoters, such as retinoic and glycyrrhetinic acids and their analogues [51,52]. Thus some glycyrrhetinic acid-related compounds were found to be inhibitors of tumour promoter-induced phenomenon in vitro. Among these compounds, the compound 46 also proved to have in vivo antitumor-promoting activity in mouse skin tumour formation induced by 7,12-dimethylbenz[a]anthracene plus tumor promoters TPA [50]. Although its mechanism is unknown, the modulation of phospholipid metabolism appeared to be a very interesting aspect was proved that the inhibitory potency of the triterpenoids for the TPA-enhanced phospholipid synthesis is closely associated with their antitumor-promoting activity. Finally, a sulforhodamine B bioassay was used to determine the cytotoxicity of compound 44. Its cytotoxic activity against four cultured human tumour cells was examined in vitro. The tumour cell lines were A549 (non small cell lung adenocarcinoma), SK-OV-3 (ovarian cancer cells), SK-MEL-2 (skin melanoma), and HCT15 (colon cancer cells) [53,54]. Doxorubicin was used as the positive control. The tested compound was essentially no cytotoxic [55]. A crude extract o mixture of compounds used in traditional medicine frequently contains components that have mutually opposing pharmacological activities beneficial for a specific disease. Molecules 2014, 19 Gymnemic acids II and III showed no effect on the serum glucose levels in oral glucose-loaded rats. They exhibited potent inhibitory activity towards glucose uptake in rat small intestine fragments [37]. Gymnemic acid V is normally considered to inhibit glucose absorption in the small intestine at a concentration of 100 mg/kg. The inhibitory effect is particularly marked after 2 h of administration, with values that are quite comparable in absolute terms to those of elatosides, escins, and senegasaponins, which were used as controls. Gymnemic acid I shows an effect almost 50% higher than that of the control after 2 h despite appearing to be less active after 30 min and 1 h. A very similar effect that is only slightly smaller than the control or gymnemic acid V was demonstrated for gymnemic acid VII and gymnemosides-a (32) and -b (33). In order of decreasing activity up to a value of approximately 30% of the control were gymnemic acid II, IV, gymnemasaponins IV and V, gymnesaponin II (40) and gymnemic acid III. However, no apparent structure-activity relationship was observed [47]. Molecules 2014, 19 Molecules 2014, 19 The higher potency of a crude drug is probably due to a synergistic effect among its component compounds, even though the activity of each compound is weak when used alone. This does not mean that it is not relevant to define a complete picture of the activities or biological properties of each compound. To identify a particular compound or a mixture of those with remarkable properties we should be able to deal with infusions or extracts that may have a different composition for an infinite number of reasons (location and/or harvesting season of the plant, particularly plant species, manner and time of extraction or partial purification etc.). Furthermore, the identification of one or of a few molecules suitable for the purpose would allow us to synthesize them, with a process as much as economically or timely convenient and to obtain pure products or well-defined composition. Molecules 2014, 19 Molecules 2014, 19 10963 Table 1. Common name and relative substituents of triterpenes with olean-12-ene skeleton. No. Molecules 2014, 19 Common Name R1 R2 R3 R4 R5 R6 1 Gymnemic acid I/3-O-β-D-Glucuronopyranosyl-21-O- tigloyl-28-O-acetyl gymnemagenin GlcA H OH OAc OH OTig 2 Gymnemic acid II/3-O-β-D-Glucuronopyranosyl-21-[S(+)-2- methyl-butyloyl]-28-O-acetyl gymnemagenin GlcA H OH OAc OH OMba 3 Gymnemic acid III/3-O-β-D-Glucuronopyranosyl-21-[S(+)- 2-methyl-butyloyl]-gymnemagenin GlcA H OH OH OH OMba 4 Gymnemic acid IV/3-O-β-D-Glucuronopyranosyl-21-O- tigloyl-gymnemagenin GlcA H OH OH OH OTig 5 Gymnemic acid V/3-O-β-D-Glucuronopyranosyl-21,22-bis- tigloyl gymnemagenin GlcA H OH OH OTig OTig 6 Gymnemic acid VI/3-O-[β-D-Glucuronopyranosyl(1→3)-β- D-glucuronopyranosyl]-21-O-tigloyl gymnemagenin A H OH OH OH OTig 7 Gymnemic acid VII/3-O-β-D- Glucuronopyranosylgymnestrogenin GlcA H OH OH H OH 8 Gymnemic acid VIII B H OH OH OH OMba 9 Gymnemic acid IX B H OH OH OH OTig 10 Gymnemic acid X/3-O-β-D-Glucuronopyranosyl-28-O- acethyl gymnemagenin GlcA H OH OAc OH OH 11 Gymnemic acid XI/3-O-β-D-Glucuronopyranosyl-21,28-bis- O-tigloyl gymnemagenin GlcA H OH OTig OH OTig 12 Gymnemic acid XII/3-O-β-D-Glucuronopyranosyl (1→3)- O-β-D-glucopyranosyl-21-O-tigloyl-28-O-acetyl gymnemagenin A H OH OAc OH OTig 13 Gymnemic acid XIII GlcA H OH OMba OH OH 14 Gymnemic acid XIV GlcA H OH OTig OH OH 15 Gymnemic acid XV/3-O-β-D-Glucuronopiranosyl-21-O-2- methylbutyryl-22-O-2-methylcrotonoylgymnemagenin GlcA H OH OH OTig OMba 16 Gymnemic acid XVI/3-O-β-D-Glucuronopiranosyl 16,22-O- bis-2-methylcrotonoylgymnemagenin GlcA H Tig OH OTig OH 17 Gymnemic acid XVII/3-O-β-D-Glucuronopiranosyl-21-O- benzoyl gymnemagenin GlcA H OH OH OH OBz 18 Gymnemic acid XVIII/3-O-β-D-Glucuronopiranosyl-28-O- benzoyl gymnemagenin GlcA H OH OBz OH OH 19 Gymnemagenin/3β,16β,21β,22α,23,28-hexahydroxyolean- 12-ene H H OH OH OH OH 20 Prosapogenin/3-O-β-D-Glucuronopyranosyl gymnemagenin GlcA H OH OH OH OH 21 12-Oleanene-3β,16β,23,28-tetrol/23- Hydroxylongispinogenin H H OH OH H H 22 3,16,23,28-O-Tetraacetyl 3β,16β,23,28-tetrahydroxyolean- 12-ene OAc OAc OAc OAc H H 23 21-O-(2S)-Methylbutanoyl 3β,16β,21β,22α,23,28- hexahydroxyolean-12-ene H H OH OH OH OMba 24 28-O-acetyl 21-O-(2S)-methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean-12-ene H H OH OAc OH OMba 25 3,16,22,23,28-O-Pentaacetyl 21-O-(2S)-methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean-12-ene OAc OAc OAc OAc OAc OMba 26 21-O-Tigloyl 3β,16β,21β,22α,23,28-hexahydroxyolean-12- ene H H OH OH OH OTig 27 Gymnemanol/3β,16β,22α,23,28-pentahydroxyolean-12-en H H OH OH OH H Molecules 2014, 19 10964 Table 1. Cont. Table 1. Cont. No. For partial structures Glc, GlcA, A, B, C, and D see Figure 1. Molecules 2014, 19 Common Name R1 R2 R3 R4 R5 R6 28 Gymnemasin A/3-O-[β-D-Gluconopyranosyl(1→3)-β- D-glucuronopyranosyl]-22-O-tigloyl gymnemanol A H OH OH OTig H 29 Gymnemasin B/3-O-[β-D-Gluconopyranosyl(1→3)-β- D-glucuronopyranosyl]-gymnemanol A H OH OH OH H 30 Gymnemasin C/3-O-β-D-glucuronopyranosyl-22- tigloyl gymnemanol GlcA H OH OH OTig H 31 Gymnemasin D/3-O-β-D- glucuronopyranosylgymnemanol GlcA H OH OH OH H 32 Gymnemoside-a/21-O-Tigloyl-22-O- acetylgymnemagenin 3-O-β-D-glucupyranosiduronic acid GlcA H OH OH OAc OTig 33 Gymnemoside-b/16-O-Acetyl-21-O-tigloyl- gymnemagenin 3-O-β-D-glucupyranosiduronic acid GlcA H OAc OH OH OTig 34 Gymnemoside-c/21-O-Benzoyl-28-O- acetylgymnemagenin 3-O-β-D-glucupyranosiduronic acid GlcA H OH OAc OH OBz 35 Gymnemoside-d/23-O-[β-D-Xylopyranosyl (1→6)-β- D-glucopyranosyl (1→6)-β-D-glucopyranosyl] gymnestrogenin H D OH OH H OH 36 Gymnemoside-e/23-O-[β-D-Xylopyranosyl(1→6)-β- D-glucopyranosyl (1→6)-β-D-glucopyranosyl]-28-O- [β-D-glucopyranosyl(1→6)-β-D-glucopyranosy] 23- hydroxylongispinogenin H D OH C H H 37 Gymnemoside-f/23-O-[β-D-Xylopyranosyl(1→6)-β- D-glucopyranosyl (1→6)-β-D-glucopyranosyl]-28-O- [9-D-glucopyranosyl (1→6)-β-D-glucopyarnosyl] 3β,16β,23,28-tetrahydroxyolean-18-ene See Figure 2 38 23-O-[β-D-Glucopyranosyl (1→6)-β-D- glucopyranosyl]-oleanene-3β,16β,23,28-tetrol/(+)-28- O-Desglucosylgymnemasaponin IV H C OH OH H H 39 Gymnemasaponin I H H OH Glc H H 40 Gymnemasaponin II H Glc OH Glc H H 41 Gymnemasaponin III H Glc OH C H H 42 Gymnemasaponin IV H C OH Glc H H 43 Gymnemasaponin V H C OH C H H 44 Gymnestrogenin/3β,16β,21β,23,28- Pentahydroxyolean-12-ene H H OH OH H OH 45 3β,16α,23,28-Tetrahydroxyolean-12-ene See Figure 2 46 3β,23,28-Trihydroxyolean-12-ene H H H OH H H 47 3β,16β,21β,23-Tetrahydroxyolean-12-ene See Figure 2 48 3β,16β,21β,23,28-Pentahydroxyolean-12-ene H H OH OH H OH 49 3β,16β,21α,23,28-Pentahydroxyolean-12-ene See Figure 2 50 3β,16β,23,28-Tetrahydroxyolean-13(18)-ene See Figure 2 51 16β,23,28-Trihydroxyolean-12-en-3-one See Figure 2 52 16β,21β,23,28-Tetrahydroxyolean-12-en-3-one See Figure 2 53 16β,21β,22α,23,28-Pentahydroxyolean-12-en-3-one For partial structures Glc, GlcA, A, B, C, and D see Figure 1. 965 Bz O O OH O HO OH O O HO Glc Glc 6 1 6 B D sylvestre O Mba S O HO HO O HOH2C O O OH HOOC O HO 3 1 Bz vestre Mba S O OH O 3 OH ylvestre Mba S l t Mba S O HO O 6 m G. s O OH O Glc O O OH OH2C O O OH HOOC O HO Glc GlcA 3 1 O HO HO OH Xyl 1 A R3 R5 R6 21 22 28 30 lated charides and substituents of triterpenoids f R4 O E Tig C Gl Glc R3 R5 22 28 ted arides and substitu R4 966 Chemical structures of compounds 37, 45, 47, 49–53. HO OH 3 16 23 28 OH OH 12 13 Compound 45 HO OH 3 16 23 28 OH 12 13 R1 R2 Compound 47 R1 = β-OH R2 = H Compound 49 R1 = α-OH R2 = OH Compound 50 R1 = H R2 = OH OH 28 R1 Compound 51 R1 = H R2 = H Compound 52 R1 = OH R2 = H Compound 53 R1 = H R2 = OH OH R2 49–53. HO OH 3 16 23 28 OH 12 13 R R Compound 47 R1 = β-OH R2 = H Compound 49 R1 = α-OH R2 = OH Compound 50 R1 = H R2 = OH 49–53. HO OH 3 16 23 28 OH 12 13 R R Compound 47 R1 = β-OH R2 = H Compound 49 R1 = α-OH R2 = OH Compound 50 R1 = H R2 = OH HO HO HO OH 3 16 23 28 OH 12 13 Compound 45 H 8 R1 Compound 51 R1 = H R2 = H Compound 52 R1 = OH R2 = H Compound 53 R1 = H R2 = O OH R2 nd C Molecules 2014, 19 Molecules 2014, 19 10967 Table 2. Isolation and distribution of triterpenes in the different parts of the plants and their NMR spectral data. No. Part of the Plant Extract Ref. Aspect Solvents of NMR Spectra 1H-NMR 13C-NMR Ref. 1 Leaves H2O CH3OH [31] [46] / C5D5N C5D5N [31,35] 2 Leaves H2O CH3OH [31] [46] / C5D5N C5D5N [31] 3 Leaves H2O CH3OH [31] [46] Colourless powder C5D5N C5D5N [30,31,56] 4 Leaves H2O CH3OH [31] [46] Colourless powder C5D5N C5D5N [30,31,56] 5 Leaves H2O CH3OH [32,46] Colourless powder C5D5N C5D5N [32,56] 6 Leaves H2O [32] / C5D5N C5D5N [32] 7 Leaves Leaves H2O CH3OH [32,46] / C5D5N C5D5N [32] 8 Leaves H2O [56] Colourless powder C5D5N+D2O C5D5N+D2O [56] 9 Leaves H2O [56] Colourless powder C5D5N+D2O C5D5N+D2O [56] 10 Leaves H2O:EtOH (2:3) [35] Amorphous white powder C5D5N C5D5N [35] 11 Leaves H2O:EtOH (2:3) [35] Amorphous white powder C5D5N C5D5N [35] 12 Leaves H2O:EtOH (2:3) [35] Amorphous white powder C5D5N C5D5N [35] 13 Leaves H2O:EtOH (2:3) [35] Amorphous powder C5D5N C5D5N [35] 14 Leaves H2O:EtOH (2:3) [35] Amorphous powder C5D5N C5D5N [35] 15 Leaves H2O:EtOH (2:3) [36] Amorphous white powder C5D5N C5D5N [36] 16 Leaves H2O:EtOH (2:3) [36] Amorphous white powder C5D5N C5D5N [36] 17 Leaves H2O:EtOH (2:3) [36] Amorphous white powder C5D5N C5D5N [36] 18 Leaves H2O:EtOH (2:3) [36] Amorphous white powder C5D5N C5D5N [36] 19 Leaves Microwave [51] [32] / C5D5N C5D5N CDCl3+CD3OD [31,56] [57] By synthesis 20 By synthesis [32] / C5D5N C5D5N CD3OD [31,56] [57] 21 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] Molecules 2014, 19 10968 Table 2. Cont. No. Part of the Plant Extract Ref. Aspect Solvents of NMR Spectra 1H-NMR 13C-NMR Ref. 22 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] 23 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] 24 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] 25 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] 26 Aerial parts CH2Cl2 [58] Amorphous powder CD3OD CD3OD [58] 27 By synthesis [59] Micro-needles C5D5N C5D5N [59] 28 Leaves H2O:EtOH (1:1) [59] Amorphous powder C5D5N C5D5N [59] 29 Leaves H2O:EtOH (1:1) [59] Amorphous powder C5D5N C5D5N [59] 30 Leaves H2O:EtOH (1:1) [59] Amorphous powder C5D5N C5D5N [59] 31 Leaves H2O:EtOH (1:1) [59] Amorphous powder C5D5N C5D5N [59] 32 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [46] 33 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [46] 34 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [37] 35 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [37] 36 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [37] 37 Leaves CH3OH [46] Colourless fine crystals C5D5N C5D5N [37] 38 By synthesis [34] / C5D5N C5D5N [34] 39 Leaves H2O:EtOH (1:1) [34] / C5D5N C5D5N [34] 40 Leaves CH3OH H2O:EtOH (1:1) [46] [34] / C5D5N C5D5N [34] 41 Leaves H2O:EtOH (1:1) [34] / C5D5N C5D5N [34] 42 Leaves CH3OH H2O:EtOH (1:1) [46] [34] / C5D5N C5D5N [34] 43 Leaves CH3OH H2O:EtOH (1:1) [46] [34] / C5D5N C5D5N [34] 44 Aerial parts H2O [32,60] / C5D5N C5D5N [32] By synthesis 45 Aerial parts H2O [57] Amorphous powder CD3OD CDCl3 CD3OD CDCl3 [58] [61] 46 Aerial parts CH2Cl2 [60] / CDCl3 CDCl3 [62] 47 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] 48 Aerial parts CH2Cl2 [60] / C5D5N C5D5N [32] 49 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] 50 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] 51 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] 52 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] 53 Aerial parts CH2Cl2 [60] Amorphous powder CD3OD CD3OD [60] Molecules 2014, 19 Molecules 2014, 19 10969 Table 3. Systematic names and physico-chemical characterization of triterpenes-1. Table 3. Systematic names and physico-chemical characterization of triterpenes-1. No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 1 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-16,22,23- trihydroxy-21-[[(2E)-2-methyl-1-oxo-2-buten- 1-yl]oxy]olean-12-en-3-yl 122,168- 40-5 C43H66O14 806.97 211–212 [31] 2 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-16,22,23- trihydroxy-21-[(2S)-2-methyl-1- oxobutoxy]olean-12-en-3-yl 122,144- 48-3 C43H68O14 808.99 212–213 [31] 3 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[(2S)-2-methyl-1-oxobutoxy]olean-12-en-3- yl 122,074- 65-1 C41H66O13 766.95 219–221 218–219 [56] [31] 4 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[[(2E)-2-methyl-1-oxo-2-buten-1- yl]oxy]olean-12-en-3-yl 121,903- 96-6 C41H64O13 764.94 229–231 210–221 [56] [31] 5 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,23,28-trihydroxy- 21,22-bis[[(2E)-2-methyl-1-oxo-2-butenyl]- oxy]olean-12-en-3-yl 121,903- 99-9 C46H70O14 847.04 214–216 202–203 [56] [32] 6 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[[(2E)-2-methyl-1-oxo-2-butenyl]oxy]olean- 12-en-3-yl 3-O-β-D-glucopyranosyl 121,903- 98-8 C47H74O18 927.08 225–226 [32] 7 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β)-16,21,23,28- tetrahydroxyolean-12-en-3-yl 121,903- 97-7 C36H58O11 666.84 222–223 [32] 8 β-D-Glucopyranosiduronic acid, [3β,4α,16β,21β(S),22α]-16,22,23,28- tetrahydroxy-21-(2-methyl-1-oxobutoxy)olean- 12-en-3-yl 3-O-β-D-arabino-hexopyranos-2- ulos-1-yl 131,653- 19-5 C47H74O18 927.08 218–220 [56] 9 β-D-Glucopyranosiduronic acid, [3β,4α,16β,21β(E),22α]-16,22,23,28- tetrahydroxy-21-[(2-methyl-1-oxo-2- butenyl)oxy]-olean-12-en-3-yl 3-O-β-D- arabino-hexopyranos-2-ulos-1-yl 131,653- 20-8 C47H72O18 925.06 222–224 [56] 10 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)- 16,21,22,23-tetrahydroxyolean-12-en-3-yl 147,934- 05-2 C38H60O13 724.86 210–212 [35] Table 3. Systematic names and physico-chemical characterization of triterpenes-1. No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 1 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-16,22,23- trihydroxy-21-[[(2E)-2-methyl-1-oxo-2-buten- 1-yl]oxy]olean-12-en-3-yl 122,168- 40-5 C43H66O14 806.97 211–212 [31] 2 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-16,22,23- trihydroxy-21-[(2S)-2-methyl-1- oxobutoxy]olean-12-en-3-yl 122,144- 48-3 C43H68O14 808.99 212–213 [31] 3 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[(2S)-2-methyl-1-oxobutoxy]olean-12-en-3- yl 122,074- 65-1 C41H66O13 766.95 219–221 218–219 [56] [31] 4 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[[(2E)-2-methyl-1-oxo-2-buten-1- yl]oxy]olean-12-en-3-yl 121,903- 96-6 C41H64O13 764.94 229–231 210–221 [56] [31] 5 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,23,28-trihydroxy- 21,22-bis[[(2E)-2-methyl-1-oxo-2-butenyl]- oxy]olean-12-en-3-yl 121,903- 99-9 C46H70O14 847.04 214–216 202–203 [56] [32] 6 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23,28-tetrahydroxy- 21-[[(2E)-2-methyl-1-oxo-2-butenyl]oxy]olean- 12-en-3-yl 3-O-β-D-glucopyranosyl 121,903- 98-8 C47H74O18 927.08 225–226 [32] 7 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β)-16,21,23,28- tetrahydroxyolean-12-en-3-yl 121,903- 97-7 C36H58O11 666.84 222–223 [32] 8 β-D-Glucopyranosiduronic acid, [3β,4α,16β,21β(S),22α]-16,22,23,28- tetrahydroxy-21-(2-methyl-1-oxobutoxy)olean- 12-en-3-yl 3-O-β-D-arabino-hexopyranos-2- ulos-1-yl 131,653- 19-5 C47H74O18 927.08 218–220 [56] 9 β-D-Glucopyranosiduronic acid, [3β,4α,16β,21β(E),22α]-16,22,23,28- tetrahydroxy-21-[(2-methyl-1-oxo-2- butenyl)oxy]-olean-12-en-3-yl 3-O-β-D- arabino-hexopyranos-2-ulos-1-yl 131,653- 20-8 C47H72O18 925.06 222–224 [56] 10 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)- 16,21,22,23-tetrahydroxyolean-12-en-3-yl 147,934- 05-2 C38H60O13 724.86 210–212 [35] 10 10 Molecules 2014, 19 10970 Table 3. Cont. No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 11 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23-trihydroxy- 21,28-bis[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]-olean-12-en-3-yl 147,899-35-2 C46H70O14 847.04 190–192 [35] 12 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)- 16,22,23-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-butenyl]oxy]olean-12-en-3-yl 3-O-β- D-glucopyranosyl 147,899-36-3 C49H76O19 968.50 209–211 [35] 13 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,21,22,23- tetrahydroxy-28-[(2S)-2-methyl-1- oxobutoxy]olean-12-en-3-yl 155,023-61-3 C41H66O13 766.95 185–187 [35] 14 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,21,22,23- tetrahydroxy-28-[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 155,023-62-4 C41H64O13 764.94 194–196 [35] 15 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,23,28-trihydroxy- 22-[[(2E)-2-methyl-1-oxo-2-butenyl]oxy]- 21-(2-methyl-1-oxobutoxy)olean-12-en-3- yl 154,977-74-9 C46H72O14 849.06 / / 16 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-21,23,28-trihydroxy- 16,22-bis[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 154,977-75-0 C46H70O14 847.04 203–205 [36] 17 Gymnemic acid XVII/β-D- Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-21-(benzoyloxy)- 16,22,23,28-tetrahydroxyolean-12-en-3-yl 154,977-76-1 C43H62O13 786.94 211–213 [36] 18 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(benzoyloxy)- 16,21,22,23-tetrahydroxyolean-12-en-3-yl 154,977-77-2 C43H62O13 786.94 201–203 [36] 19 Olean-12-ene-3,16,21,22,23,28-hexol, (3β,4α,16β,21β,22α) 22,467-07-8 C30H50O6 506.71 313–314 >300 328–335 [32,35] [56] [63] 20 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-3,16,21,22,23,28- hexahydroxyolean-12-en-3-yl 50,647-08-0 C36H58O11 666.84 230–231 [32,35] 21 3β,16β,23,28-Tetrahydroxyolean-12-ene 42,483-24-9 C30H50O4 474.72 / [58] No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 11 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,22,23-trihydroxy- 21,28-bis[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]-olean-12-en-3-yl 147,899-35-2 C46H70O14 847.04 190–192 [35] 12 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)- 16,22,23-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-butenyl]oxy]olean-12-en-3-yl 3-O-β- D-glucopyranosyl 147,899-36-3 C49H76O19 968.50 209–211 [35] 13 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,21,22,23- tetrahydroxy-28-[(2S)-2-methyl-1- oxobutoxy]olean-12-en-3-yl 155,023-61-3 C41H66O13 766.95 185–187 [35] 14 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,21,22,23- tetrahydroxy-28-[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 155,023-62-4 C41H64O13 764.94 194–196 [35] 15 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16,23,28-trihydroxy- 22-[[(2E)-2-methyl-1-oxo-2-butenyl]oxy]- 21-(2-methyl-1-oxobutoxy)olean-12-en-3- yl 154,977-74-9 C46H72O14 849.06 / / 16 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-21,23,28-trihydroxy- 16,22-bis[[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 154,977-75-0 C46H70O14 847.04 203–205 [36] 17 Gymnemic acid XVII/β-D- Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-21-(benzoyloxy)- 16,22,23,28-tetrahydroxyolean-12-en-3-yl 154,977-76-1 C43H62O13 786.94 211–213 [36] 18 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(benzoyloxy)- 16,21,22,23-tetrahydroxyolean-12-en-3-yl 154,977-77-2 C43H62O13 786.94 201–203 [36] 19 Olean-12-ene-3,16,21,22,23,28-hexol, (3β,4α,16β,21β,22α) 22,467-07-8 C30H50O6 506.71 313–314 >300 328–335 [32,35] [56] [63] 20 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-3,16,21,22,23,28- hexahydroxyolean-12-en-3-yl 50,647-08-0 C36H58O11 666.84 230–231 [32,35] 21 3β,16β,23,28-Tetrahydroxyolean-12-ene 42,483-24-9 C30H50O4 474.72 / [58] No. Molecules 2014, 19 10971 Table 3. Cont. Table 3. Cont. No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 22 3,16,23,28-O-Tetraacetyl 3β,16β,23,28- tetrahydroxyolean-12-ene / C38H59O7 627.87 / [58] 23 21-O-(2S)-Methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean- 12-ene / C35H59O7 591.84 / [58] 24 28-O-Acetyl 21-O-(2S)-methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean- 12-ene / C37H61O7 617.88 / [58] 25 3,16,22,23,28-O-Pentaacetyl 21-O-(2S)- methylbutanoyl 3β,16β,21β,22α,23,28- hexahydroxyolean-12-ene / C45H68O11 785.01 / [58] 26 21-O-Tigloyl 3β,16β,21β,22α,23,28- hexahydroxyolean-12-ene / C35H57O6 573.82 / [58] 27 Olean-12-ene-3,16,22,23,28-pentol, (3β,4α,16β,22α) 174,324- 52-8 C30H50O5 490.72 284–285 [59] 28 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,23,28-trihydroxy-22- [[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 3-O-β-D- glucopyranosyl 174,324- 49-3 C47H74O17 910.49 215–217 [59] 29 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,22,23,28- tetrahydroxyolean-12-en-3-yl 3-O-β-D- glucopyranosyl 174,324- 48-2 C42H68O16 828.45 221–222 [59] 30 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,23,28-trihydroxy-22- [[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 174,324- 50-6 C41H64O12 748.44 212–214 [59] 31 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,22,23,28- tetrahydroxyolean-12-en-3-yl 174,324- 51-7 C36H58O11 666.40 220–221 [59] 32 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-22-(acetyloxy)- 16,23,28-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-buten-1-yl]oxy]olean-12-en-3-yl 175,033- 15-5 C43H66O14 806.98 207.0–208.5 [46] 33 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16-(acetyloxy)- 22,23,28-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-buten-1-yl]oxy]olean-12-en-3-yl 174,232- 51-0 C43H66O14 806.98 211.5–213.0 [46] 34 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-21- (benzoyloxy)-16,22,23-trihydroxyolean-12- en-3-yl 199,618- 65-0 C45H64O14 828.98 211.5–213.0 [37] 35 β-D-Glucopyranoside, (3β,4α,16β,21β)- 3,16,21,28-tetrahydroxyolean-12-en-23-yl O-β-D-xylopyranosyl-(1→6)-O-β-D- glucopyranosyl-(1→6)-β-D-glucopyranosyl 199,618- 66-1 C47H78O19 947.11 219.1–221.0 [37] No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. 22 3,16,23,28-O-Tetraacetyl 3β,16β,23,28- tetrahydroxyolean-12-ene / C38H59O7 627.87 / [58] 23 21-O-(2S)-Methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean- 12-ene / C35H59O7 591.84 / [58] 24 28-O-Acetyl 21-O-(2S)-methylbutanoyl 3β,16β,21β,22α,23,28-hexahydroxyolean- 12-ene / C37H61O7 617.88 / [58] 25 3,16,22,23,28-O-Pentaacetyl 21-O-(2S)- methylbutanoyl 3β,16β,21β,22α,23,28- hexahydroxyolean-12-ene / C45H68O11 785.01 / [58] 26 21-O-Tigloyl 3β,16β,21β,22α,23,28- hexahydroxyolean-12-ene / C35H57O6 573.82 / [58] 27 Olean-12-ene-3,16,22,23,28-pentol, (3β,4α,16β,22α) 174,324- 52-8 C30H50O5 490.72 284–285 [59] 28 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,23,28-trihydroxy-22- [[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 3-O-β-D- glucopyranosyl 174,324- 49-3 C47H74O17 910.49 215–217 [59] 29 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,22,23,28- tetrahydroxyolean-12-en-3-yl 3-O-β-D- glucopyranosyl 174,324- 48-2 C42H68O16 828.45 221–222 [59] 30 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,23,28-trihydroxy-22- [[(2E)-2-methyl-1-oxo-2- butenyl]oxy]olean-12-en-3-yl 174,324- 50-6 C41H64O12 748.44 212–214 [59] 31 β-D-Glucopyranosiduronic acid, (3β,4α,16β,22α)-16,22,23,28- tetrahydroxyolean-12-en-3-yl 174,324- 51-7 C36H58O11 666.40 220–221 [59] 32 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-22-(acetyloxy)- 16,23,28-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-buten-1-yl]oxy]olean-12-en-3-yl 175,033- 15-5 C43H66O14 806.98 207.0–208.5 [46] 33 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-16-(acetyloxy)- 22,23,28-trihydroxy-21-[[(2E)-2-methyl-1- oxo-2-buten-1-yl]oxy]olean-12-en-3-yl 174,232- 51-0 C43H66O14 806.98 211.5–213.0 [46] 34 β-D-Glucopyranosiduronic acid, (3β,4α,16β,21β,22α)-28-(acetyloxy)-21- (benzoyloxy)-16,22,23-trihydroxyolean-12- en-3-yl 199,618- 65-0 C45H64O14 828.98 211.5–213.0 [37] 35 β-D-Glucopyranoside, (3β,4α,16β,21β)- 3,16,21,28-tetrahydroxyolean-12-en-23-yl O-β-D-xylopyranosyl-(1→6)-O-β-D- glucopyranosyl-(1→6)-β-D-glucopyranosyl 199,618- 66-1 C47H78O19 947.11 219.1–221.0 [37] 29 Molecules 2014, 19 10972 Table 3. Cont. Table 3. Cont. No. Systematic Name CAS Molecular Formula Molecular Weight Melting Point °C Ref. MS Analysis 1 / 2 / 3 / 4 / 5 / FAB(+): 892 [M + 2Na]+ 6 FAB(+): 972 [M + 2Na]+ 7 FAB(+): 712 [M + 2Na]+ 8 HR-FAB(+): 949.4818 [M + Na]+ 9 HR-FAB(+): 947.4681 [M + Na]+ 10 FAB(−): 723[M − H]− 11 FAB(−): 845 [M − H]− 12 FAB(−): 967 [M − H]− 13 FAB(−): 765 [M − H]− 14 FAB(−): 763 [M − H]− 15 FAB(−): 847 [M − H]−, 747 [M − H − C5H8O2]−, 745 [M − H − C5H10O2]−, 645 [M − H − C5H8O2-C5H10O2]− 16 FAB(−): 845 [M − H]−, 745 [M − H − C5H8O2]−, 645 [M – H − 2C5H8O2]− 17 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 18 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 19 FAB(+): 529 [M + Na]+ FAB(+): 506 [M]+, 488 [M − H2O]+ HR-ESI-MS: 507.3678 [M + H]+ 20 FAB(+): 705 [M + Na]+ 728 [M + 2Na]+ 21 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ FAB(+): 497 [M + Na]+ 22 HR-ESI-MS: 643.4204 [M + H]+ Table 4. Physico-chemical characterization of triterpenes-2. No. MS Analysis IR υmax, cm−l [α]D (c, MeOH) Ref. 1 / / +36.7° (2.4) [31] 2 / / +36.3° (1.5) [31] 3 / 3400 (OH), 1715 (C=O) +9.6° (0.39) [56] 4 / 3400 (OH), 1700 (C=O) +7.4° (0.21) [56] 5 / FAB(+): 892 [M + 2Na]+ 3400 (OH), 1700 (C=O) / +3.3° (0.30) +2.2° (3.6) [56] [32] 6 FAB(+): 972 [M + 2Na]+ / +11.7° (1.1) [32] 7 FAB(+): 712 [M + 2Na]+ / +9.6° (5.7) [32] 8 HR-FAB(+): 949.4818 [M + Na]+ 3450 (OH), 1730 (C=O) +17.3° (0.74) [56] 9 HR-FAB(+): 947.4681 [M + Na]+ 3400 (OH), 1730 (C=O), 1700 (C=O) +11.4° (0.70) [56] 10 FAB(−): 723[M − H]− 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +14.9° (2.3) [35] 11 FAB(−): 845 [M − H]− 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +1.7° (5.3) [35] 12 FAB(−): 967 [M − H]− 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +11.7° (3.6) [35] 13 FAB(−): 765 [M − H]− 3400 (OH), 1720 (C=O), 1600 (C=C), 1040 (OH) +21.5° (3.5) [35,36 14 FAB(−): 763 [M − H]− 3380 (OH), 1705 (C=O), 1605 (C=C), 1060 (OH). +7.6° (1.8) [35,36 15 FAB(−): 847 [M − H]−, 747 [M − H − C5H8O2]−, 745 [M − H − C5H10O2]−, 645 [M − H − C5H8O2-C5H10O2]− 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +7.2° (1.52) [36] 16 FAB(−): 845 [M − H]−, 745 [M − H − C5H8O2]−, 645 [M – H − 2C5H8O2]− 3380 (OH), 1740 (C=O), 1650 (C=C), 1050 (OH) −6.8° (2.96) [36] 17 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 3450 (OH), 1700 (C=O), 1720 (C=O), 1605(C=C), 1060 (OH) +7.1° (2.96) [36] 18 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 3400 (OH), 1700 (C=O), 1650 (C=C), 1040 (OH) +6.4° (1.71) [36] 19 FAB(+): 529 [M + Na]+ FAB(+): 506 [M]+, 488 [M − H2O]+ HR-ESI-MS: 507.3678 [M + H]+ / / 3328, 1111, 1089, 1037 +53.5° (1.8) +53.9° (0.75) −1.2° (0.19) [32,35 [56] [58] 20 FAB(+): 705 [M + Na]+ 728 [M + 2Na]+ / / +8.4° (1.8) +8.4° (1.8) [35] [32] 21 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ FAB(+): 497 [M + Na]+ 3345, 1132, 1077, 1038 −0.67° (0.22) +32.0° (2.8) [58] [34,61 22 HR-ESI-MS: 643.4204 [M + H]+ 3333, 1758, 1754, 1117, 1091, 1033 +50.0° (0.23) [58] Table 4. Physico-chemical characterization of triterpenes-2. Table 4. Physico chemical characterization of triterpenes 2. No. MS Analysis IR υmax, cm−l [α]D (c, MeOH) Ref. 1 / / +36.7° (2.4) [31] 2 / / +36.3° (1.5) [31] 3 / 3400 (OH), 1715 (C=O) +9.6° (0.39) [56] 4 / 3400 (OH), 1700 (C=O) +7.4° (0.21) [56] 5 / FAB(+): 892 [M + 2Na]+ 3400 (OH), 1700 (C=O) / +3.3° (0.30) +2.2° (3.6) [56] [32] 6 FAB(+): 972 [M + 2Na]+ / +11.7° (1.1) [32] 7 FAB(+): 712 [M + 2Na]+ / +9.6° (5.7) [32] 8 HR-FAB(+): 949.4818 [M + Na]+ 3450 (OH), 1730 (C=O) +17.3° (0.74) [56] 9 HR-FAB(+): 947.4681 [M + Na]+ 3400 (OH), 1730 (C=O), 1700 (C=O) +11.4° (0.70) [56] 10 FAB(−): 723[M − H]− 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +14.9° (2.3) [35] 11 FAB(−): 845 [M − H]− 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +1.7° (5.3) [35] 12 FAB(−): 967 [M − H]− 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +11.7° (3.6) [35] 13 FAB(−): 765 [M − H]− 3400 (OH), 1720 (C=O), 1600 (C=C), 1040 (OH) +21.5° (3.5) [35,36] 14 FAB(−): 763 [M − H]− 3380 (OH), 1705 (C=O), 1605 (C=C), 1060 (OH). +7.6° (1.8) [35,36] 15 FAB(−): 847 [M − H]−, 747 [M − H − C5H8O2]−, 745 [M − H − C5H10O2]−, 645 [M − H − C5H8O2-C5H10O2]− 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +7.2° (1.52) [36] 16 FAB(−): 845 [M − H]−, 745 [M − H − C5H8O2]−, 645 [M – H − 2C5H8O2]− 3380 (OH), 1740 (C=O), 1650 (C=C), 1050 (OH) −6.8° (2.96) [36] 17 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 3450 (OH), 1700 (C=O), 1720 (C=O), 1605(C=C), 1060 (OH) +7.1° (2.96) [36] 18 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 3400 (OH), 1700 (C=O), 1650 (C=C), 1040 (OH) +6.4° (1.71) [36] 19 FAB(+): 529 [M + Na]+ FAB(+): 506 [M]+, 488 [M − H2O]+ HR-ESI-MS: 507.3678 [M + H]+ / / 3328, 1111, 1089, 1037 +53.5° (1.8) +53.9° (0.75) −1.2° (0.19) [32,35] [56] [58] 20 FAB(+): 705 [M + Na]+ 728 [M + 2Na]+ / / +8.4° (1.8) +8.4° (1.8) [35] [32] 21 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ FAB(+): 497 [M + Na]+ 3345, 1132, 1077, 1038 −0.67° (0.22) +32.0° (2.8) [58] [34,61] characterization of triterpenes 2. IR υmax, cm−l [α]D (c, MeOH) Ref. 36 β-D-Glucopyranoside, (3β,4α,16β)-3,16- dihydroxy-23-[(O-β-D-xylopyranosyl- (1→6)-O-β-D-glucopyranosyl-(1→6)-β-D- glucopyranosyl)oxy]olean-12-en-28-yl 6- O-β-D-glucopyranosyl 199,618- 67-2 C59H98O28 1255.39 202.8– 204.1 [37] 37 β-D-Glucopyranoside, (3β,4α,16β)-3,16- dihydroxy-23-[(O-β-D-xylopyranosyl- (1→6)-O-β-D-glucopyranosyl-(1→6)-β-D- glucopyranosyl)oxy]olean-18-en-28-yl 6- O-β-D-glucopyranosyl 199,618- 68-3 C59H98O28 1255.39 201.3– 203.2 [37] 38 β-D-Glucopyranoside, (3β,4α,16β)-3,16,28- trihydroxyolean-12-en-23-yl 6-O-β-D- glucopyranosyl 133,629- 85-3 C42H70O14 799.00 173–175 [34] 39 β-D-Glucopyranoside,(3β,4α,16β)-3,16,23- trihydroxyolean-12-en-28-yl 133,629- 80-8 C36H60O9 636.86 184–185 [34] 40 β-D-Glucopyranoside, (3β,4α,16β)-3,16- dihydroxyolean-12-ene-23,28-diyl bis 133,629- 81-9 C42H70O14 799.00 190–192 [34] 41 β-D-Glucopyranoside, (3β,4α,16β)-23-(β-D- glucopyranosyloxy)-3,16-dihydroxyolean- 12-en-28-yl 6-O-β-D-glucopyranosyl 133,629- 82-0 C48H80O19 961.14 203–205 [34] 42 β-D-Glucopyranoside, (3β,4α,16β)-28-(β-D- glucopyranosyloxy)-3,16-dihydroxyolean- 12-en-23-yl 6-O-β-D-glucopyranosyl 133,629- 83-1 C48H80O19 961.14 201–203 [34] 43 β-D-Glucopyranoside, (3β,4α,16β)-3,16- dihydroxyolean-12-ene-23,28-diyl bis[6-O- β-D-glucopyranosyl] 133,629- 84-2 C54H90O24 1123.28 186–188 [34,37] 44 Olean-12-ene-3,16,21,23,28-pentol, (3β,4α,16β,21β) 19,942-02- 0 C30H50O5 490.72 290–291 [32] 45 Olean-12-ene-3,16,23,28-tetrol, (3β,4α,16β) 23,887-98- 1 C30H50O4 474.72 [64] 46 (3β-Olean-12-ene-3,23,28-triol 35,043-82- 4 C30H50O3 458.72 / [62] 47 (3β,16β,21β-Olean-12-ene-3,16,21,23-tetrol 1,447,214- 81-4 C30H50O4 474.72 / [62] 48 (3β,16β,21β-Olean-12-ene-3,16,21,23,28- pentol 42,483-24- 9 C30H50O4 474.72 / [62] 49 (3β,16β,21α-Olean-12-ene-3,16,21,23,28- pentol 1,447,214- 84-7 C30H50O5 490.72 / [62] 50 (3β,16β-Olean-13(18)-ene-3,16,23,28-tetrol 26,540-63- 6 C30H50O4 474.72 / [62] 51 16β,23,28-Tetrahydroxyolean-12-en-3-one 1,447,214- 87-0 C30H48O4 472.70 / [62] 52 16β,21β,23,28-Tetrahydroxyolean-12-en-3- one 1,447,214- 89-2 C30H48O5 488.70 / [62] 53 16 β,22α,23,28-Tetrahydroxyolean-12-en- 3-one 1,447,214- 91-6 C30H48O5 488.70 / [62] No. [62] Molecules 2014, 19 Molecules 2014, 19 10973 Molecules 2014, 19 Table 4. Physico-chemic No. MS Analysis 1 / 2 / 3 / 4 / 5 / FAB(+): 892 [M + 2Na]+ 6 FAB(+): 972 [M + 2Na]+ 7 FAB(+): 712 [M + 2Na]+ 8 HR-FAB(+): 949.4818 [M + Na]+ 9 HR-FAB(+): 947.4681 [M + Na]+ 10 FAB(−): 723[M − H]− 11 FAB(−): 845 [M − H]− 12 FAB(−): 967 [M − H]− 13 FAB(−): 765 [M − H]− 14 FAB(−): 763 [M − H]− 15 FAB(−): 847 [M − H]−, 747 [M − H − C5H8O2]−, 745 [M − H − C5H10O2]−, 645 [M − H − C5H8O2-C5H10O2]− 16 FAB(−): 845 [M − H]−, 745 [M − H − C5H8O2]−, 645 [M – H − 2C5H8O2]− 17 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 18 FAB(−): 785 [M − H]−, 663 [M − H − C7H6O2]− 19 FAB(+): 529 [M + Na]+ FAB(+): 506 [M]+, 488 [M − H2O]+ HR-ESI-MS: 507.3678 [M + H]+ 20 FAB(+): 705 [M + Na]+ 728 [M + 2Na]+ 21 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ FAB(+): 497 [M + Na]+ 22 HR-ESI-MS: 643.4204 [M + H]+ Table 4. Physico-chemic No. / +36.7° (2.4) [31] / +36.3° (1.5) [31] 3400 (OH), 1715 (C=O) +9.6° (0.39) [56] 3400 (OH), 1700 (C=O) +7.4° (0.21) [56] 3400 (OH), 1700 (C=O) / +3.3° (0.30) +2.2° (3.6) [56] [32] / +11.7° (1.1) [32] / +9.6° (5.7) [32] 3450 (OH), 1730 (C=O) +17.3° (0.74) [56] 3400 (OH), 1730 (C=O), 1700 (C=O) +11.4° (0.70) [56] 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +14.9° (2.3) [35] 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +1.7° (5.3) [35] 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +11.7° (3.6) [35] 3400 (OH), 1720 (C=O), 1600 (C=C), 1040 (OH) +21.5° (3.5) [35,36] 3380 (OH), 1705 (C=O), 1605 (C=C), 1060 (OH). +7.6° (1.8) [35,36] 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +7.2° (1.52) [36] 3380 (OH), 1740 (C=O), 1650 (C=C), 1050 (OH) −6.8° (2.96) [36] 3450 (OH), 1700 (C=O), 1720 (C=O), 1605(C=C), 1060 (OH) +7.1° (2.96) [36] 3400 (OH), 1700 (C=O), 1650 (C=C), 1040 (OH) +6.4° (1.71) [36] / / 3328, 1111, 1089, 1037 +53.5° (1.8) +53.9° (0.75) −1.2° (0.19) [32,35] [56] [58] / / +8.4° (1.8) +8.4° (1.8) [35] [32] 3345, 1132, 1077, 1038 −0.67° (0.22) +32.0° (2.8) [58] [34,61] 3333, 1758, 1754, 1117, 1091, 1033 +50.0° (0.23) [58] IR υmax, cm−l [α]D (c, MeOH) Ref. / +36.7° (2.4) [31] / +36.3° (1.5) [31] 3400 (OH), 1715 (C=O) +9.6° (0.39) [56] 3400 (OH), 1700 (C=O) +7.4° (0.21) [56] 3400 (OH), 1700 (C=O) / +3.3° (0.30) +2.2° (3.6) [56] [32] / +11.7° (1.1) [32] / +9.6° (5.7) [32] 3450 (OH), 1730 (C=O) +17.3° (0.74) [56] 3400 (OH), 1730 (C=O), 1700 (C=O) +11.4° (0.70) [56] 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +14.9° (2.3) [35] 3400 (OH), 1740 (C=O), 1610 (C=C), 1040 (OH) +1.7° (5.3) [35] 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +11.7° (3.6) [35] 3400 (OH), 1720 (C=O), 1600 (C=C), 1040 (OH) +21.5° (3.5) [35,36] 3380 (OH), 1705 (C=O), 1605 (C=C), 1060 (OH). FAB(−): 1253 [M − H]− 3431, 1044 −8.9° (0.1) [37] 38 FAB(+): 821 [M + Na]+ / +12.1° (1.1) [34,61] 39 FAB(+): 659 [M + Na]+ / +9.3° (3.5) [34,61] 40 FAB(+): 821 [M + Na]+ / +1.9° (2.6) [34,61] 41 FAB(+): 983 [M + Na]+ / −11.6° (1.1) [34,61] 42 FAB(+): 98 3[M + Na]+ / −1.1° (1.9) [34,61] 43 FAB(+): 1145 [M + Na]+ / −6.2°(1.9) [34,61] 44 FAB(+): 712 [M+2Na]+ / +53.1° (2.4) [32] 45 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ 3333, 1758, 1754, 1117, 1091, 1033 −0.67° (0.22) [36] 46 HR-FAB(+): 481.3720 [M + Na]+ 3344, 2930, 2857, 1725, 1459, 756 / [62] Table 4. Cont. No. MS Analysis IR υmax, cm−l [α]D (c, MeOH) Ref. 23 HR-ESI-MS: 591.4254 [M + H]+ 3370, 1747, 1118, 1096, 1046 +3.5° (0.21) [58] 24 HR-ESI-MS: 633.4360 [M + H]+ 3352, 1746, 1113, 1091, 1041 +16.5° (0.2 ) [58] 25 HR-ESI-MS: 801.4782 [M + H]+ 3355, 1764, 1750, 1113, 1090, 1042 +2.5° (0.21) [58] 26 HR-ESI-MS: 589.4099 [M + H]+ 3352, 17,252, 1113, 1093, 1041 +3.5° (0.22) [58] 27 EI: 490 [M]+, 472 [M − H2O]+, 454 [M − 2H2O]+ 441 [M − H2O − CH2OH]+, 436 [M − 3H2O]+ 3350 (OH) +51.5° (1.0) [59] 28 FAB(+): 933 [M + Na]+. FAB(−): 909 [M − H]− 3400 (OH), 1715 (C=O), 1600 (C=C) +15° (1.5) [59] 29 FAB(−): 827 [M − H]− 3420 (OH), 1710 (C=O) +18.5° (1.0) [59] 30 FAB(−): 747 [M − H]− 3410 (OH), 1715 (C=O) +12.5° (1.0) [59] 31 FAB(−): 665 [M − H]− 3425 (OH),1715 (C=O) +8° (0.9) [59] 32 HR-FAB(−): 805.4385 [M − H]− HR-FAB(+): 829.4430 [M − Na]+ 3453, 1721, 1649, 1040 +4.7° (0.1) [46] 33 HR-FAB(−): 805.4404 [M − H]− HR-FAB(+): 829.4428 [M − Na]+ 3445, 1718, 1649, 1044 +6.6° (0.1) [46] 34 HR-FAB(+): 829.4360 [M + Na]+ FAB(+): 851 [M + Na]+. FAB(−): 827 [M − H]− 3445, 1718, 1649, 1044 +6.6° (0.1) [37] 35 HR-FAB(+): 969.5050 [M + Na]+ FAB(+): 991 [M + 2Na − H]+, 969 [M + Na]+. FAB(−): 945 [M − H]− 3410, 1044 +13.4° (0.1) [37] 36 HR-FAB(−): 1253.6154 [M − H]−, FAB(+): 1277 [M + Na]+. FAB(−): 1253 [M − H]− 3410, 1044 +14.8° (0.1) [37] 37 HR-FAB(−): 1253.6167 [M − H]− FAB(+): 1277 [M + Na]+. +7.6° (1.8) [35,36] 3400 (OH), 1740 (C=O), 1720 (C=O), 1610 (C=C), 1040 (OH) +7.2° (1.52) [36] 3380 (OH), 1740 (C=O), 1650 (C=C), 1050 (OH) −6.8° (2.96) [36] 3450 (OH), 1700 (C=O), 1720 (C=O), 1605(C=C), 1060 (OH) +7.1° (2.96) [36] 3400 (OH), 1700 (C=O), 1650 (C=C), 1040 (OH) +6.4° (1.71) [36] / / 3328, 1111, 1089, 1037 +53.5° (1.8) +53.9° (0.75) −1.2° (0.19) [32,35] [56] [58] / / +8.4° (1.8) +8.4° (1.8) [35] [32] 3345, 1132, 1077, 1038 −0.67° (0.22) +32.0° (2.8) [58] [34,61] 3333, 1758, 1754, 1117, 1091, 1033 +50.0° (0.23) [58] Molecules 2014, 19 10974 Table 4. Cont. No. MS Analysis IR υmax, cm−l [α]D (c, MeOH) Ref. 23 HR-ESI-MS: 591.4254 [M + H]+ 3370, 1747, 1118, 1096, 1046 +3.5° (0.21) [58] 24 HR-ESI-MS: 633.4360 [M + H]+ 3352, 1746, 1113, 1091, 1041 +16.5° (0.2 ) [58] 25 HR-ESI-MS: 801.4782 [M + H]+ 3355, 1764, 1750, 1113, 1090, 1042 +2.5° (0.21) [58] 26 HR-ESI-MS: 589.4099 [M + H]+ 3352, 17,252, 1113, 1093, 1041 +3.5° (0.22) [58] 27 EI: 490 [M]+, 472 [M − H2O]+, 454 [M − 2H2O]+ 441 [M − H2O − CH2OH]+, 436 [M − 3H2O]+ 3350 (OH) +51.5° (1.0) [59] 28 FAB(+): 933 [M + Na]+. FAB(−): 909 [M − H]− 3400 (OH), 1715 (C=O), 1600 (C=C) +15° (1.5) [59] 29 FAB(−): 827 [M − H]− 3420 (OH), 1710 (C=O) +18.5° (1.0) [59] 30 FAB(−): 747 [M − H]− 3410 (OH), 1715 (C=O) +12.5° (1.0) [59] 31 FAB(−): 665 [M − H]− 3425 (OH),1715 (C=O) +8° (0.9) [59] 32 HR-FAB(−): 805.4385 [M − H]− HR-FAB(+): 829.4430 [M − Na]+ 3453, 1721, 1649, 1040 +4.7° (0.1) [46] 33 HR-FAB(−): 805.4404 [M − H]− HR-FAB(+): 829.4428 [M − Na]+ 3445, 1718, 1649, 1044 +6.6° (0.1) [46] 34 HR-FAB(+): 829.4360 [M + Na]+ FAB(+): 851 [M + Na]+. FAB(−): 827 [M − H]− 3445, 1718, 1649, 1044 +6.6° (0.1) [37] 35 HR-FAB(+): 969.5050 [M + Na]+ FAB(+): 991 [M + 2Na − H]+, 969 [M + Na]+. FAB(−): 945 [M − H]− 3410, 1044 +13.4° (0.1) [37] 36 HR-FAB(−): 1253.6154 [M − H]−, FAB(+): 1277 [M + Na]+. FAB(−): 1253 [M − H]− 3410, 1044 +14.8° (0.1) [37] 37 HR-FAB(−): 1253.6167 [M − H]− FAB(+): 1277 [M + Na]+. FAB(−): 1253 [M − H]− 3431, 1044 −8.9° (0.1) [37] 38 FAB(+): 821 [M + Na]+ / +12.1° (1.1) [34,61] 39 FAB(+): 659 [M + Na]+ / +9.3° (3.5) [34,61] 40 FAB(+): 821 [M + Na]+ / +1.9° (2.6) [34,61] 41 FAB(+): 983 [M + Na]+ / −11.6° (1.1) [34,61] 42 FAB(+): 98 3[M + Na]+ / −1.1° (1.9) [34,61] 43 FAB(+): 1145 [M + Na]+ / −6.2°(1.9) [34,61] 44 FAB(+): 712 [M+2Na]+ / +53.1° (2.4) [32] 45 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3780 [M + H]+ 3333, 1758, 1754, 1117, 1091, 1033 −0.67° (0.22) [36] 46 HR-FAB(+): 481.3720 [M + Na]+ 3344, 2930, 2857, 1725, 1459, 756 / [62] [62] 46 Molecules 2014, 19 10975 Table 4. Cont. No. MS Analysis IR υmax, cm−l [α]D (c, MeOH) Ref. 47 ESI-MS: 475.2 [M + H]+. HR-ESI-MS: 475.3769 [M + H]+ 3347, 1130, 1080, 1035 +20.5° (0.27) [60] 48 / / +53.1° (2.4) [32] 49 ESI-MS: 491.4 [M + H]+. HR-ESI-MS: 491.3728 [M + H]+ 3330, 1115, 1095, 1035 +32.3° (0.23) [60] 50 ESI-MS: 475.5 [M + H]+. HR-ESI-MS: 475.3745 [M + H]+ 3334, 1112, 1087, 1034 −1.2° (0.19) [60] 51 ESI-MS: 473.2 [M + H]+. HR-ESI-MS: 473.3620 [M + H]+ 3376, 1722, 1118, 1090, 1045 +25.5° (0.21) [60] 52 ESI-MS: 489.2 [M + H]+. HR-ESI-MS: 489.3563 [M + H]+ 3350, 1724, 1118, 1090, 1045 +26.5° (0.22) [60] 53 ESI-MS: 505.3 [M + H]+. HR-ESI-MS: 505.3500 [M + H]+ 30, 1723, 1128, 1080, 1050 +23.1° (0.27) [60] Table 5. Biological properties associated with the triterpenes with a focus on their potential chemotherapeutic applications Table 5. Biological properties associated with the triterpenes with a focus on their potential chemotherapeutic applications. No. Activity Ref. 1 Antisweet activity Glucose uptake in rat small intestinal fragment Increase of serum glucose level in oral glucose-loaded rats Anti-hyperglycemic activity [31,35,38] [37,38] [46,47] [38] 2 Antisweet activity Glucose uptake in rat small intestinal fragment Increase of serum glucose level in oral glucose-loaded rats Anti-hyperglycemic activity [31,35,38] [37,38] [46,47] [38] 3 Antisweet activity Glucose uptake in rat small intestinal fragment Increase of serum glucose level in oral glucose-loaded rats Anti-hyperglycemic activity [30,31,35,38] [37,38] [46,47] [38] 4 Antisweet activity Glucose uptake in rat small intestinal fragment Increase of serum glucose level in oral glucose-loaded rats Anti-hyperglycemic activity Gut glycosidase inhibition [30,31,35,38] [37,38] [46,47] [38,65] [38] 5 Antisweet activity Increase of serum glucose level in oral glucose-loaded rats Anti-hyperglycemic activity Glucose uptake in rat small intestinal fragment [32,38] [46,47,65] [38] [38] 6 Antisweet activity [32] 7 Antisweet activity Increase of serum glucose level in oral glucose-loaded rats [32] [46,47] 10 Antisweet activity [35] 11 Antisweet activity [35] 10976 Molecules 2014, 19 Molecules 2014, 19 Table 5. Cont. Table 5. Cont. No. Activity Ref. 12 Antisweet activity [35] 13 Antisweet activity [35] 14 Antisweet activity [35] 15 Antisweet activity [36] 16 Antisweet activity [36] 17 Antisweet activity [36] 18 Antisweet activity [36] 19 Antisweet activity [31] Pharmacokinetic study: determination of gymnemagenin in rat plasma using HPLC-MS/MS [66] 20 Antisweet activity [31] 27 Inhibition of the 11β-hydroxysteroid dehydrogenase type 1 [63,66] 28 Hypoglycemic and antihyperglycemic effect in rats [61] 29 Hypoglycemic and antihyperglycemic effect in rats [61] 30 Hypoglycemic and antihyperglycemic effect in rats [61] 31 Hypoglycemic and antihyperglycemic effect in rats [61] 32 Increase of serum glucose level in oral glucose-loaded rats [46,47] 33 Increase of serum glucose level in oral glucose-loaded rats [46,47] 34 Glucose uptake in rat small intestinal fragment [37] 35 Glucose uptake in rat small intestinal fragment [37] 36 Glucose uptake in rat small intestinal fragment [37] 37 Glucose uptake in rat small intestinal fragment [37] 39 Antisweet activity [34] 40 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [46,47] 41 Antisweet activity [34] 42 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [46,47] 43 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [37,47,59] 44 Inhibitory effects on human tumor cell lines (A549, SK-OV-3, SK- MEL-2, and HCT15) in vitro using the sulforhodamine B (SRB) assay [55] 46 In vivo antitumor-promoting activity in mouse skin tumor [50] Inhibition of the tumor-promoting action of 12-O- tetradecanoylphorbol 13-acetate [48,49] Inhibition of phospholipid synthesis by 12-O-tetradecanoylphorbol-13- acetate [67] In vitro in human uterus cancer cells Anti-inflammatory activity and also to inhibit liver carcinogenesis and tumor growth [51] No. Activity Ref. Molecules 2014, 19 Molecules 2014, 19 Molecules 2014, 19 10977 3. Conclusions The market of natural substances is very attractive for its economic impact, which, on the other hand grows continuously. Research into new natural substances that can be used in the pharmaceutical, agrochemical and agro-industrial production of drugs, biopesticides and food additives has grown in recent years. Gymnema sylvestre is a relevant specific example of a plant very interesting for its numerous pharmacological properties, which include antidiabetic, anticarcinogenic, and neuroprotective effects, used as a medicinal plant in Asia for thousands of years. Its properties are attributed to triterpenoidic saponins. In light of the considerable interest generated in the chemistry and pharmacological properties of G. sylvestre triterpenes and their analogues, this review summarises the available literature on these promising bioactive natural products. The review shows the results about the isolation, chemistry and bioactivity of the triterpenoids oxidised at C-23, which are schematically presented in few tables, in particular, their isolation, distribution in different parts of the plant, and their NMR spectral data; their names and physico-chemical characterisation; and the biological properties associated with these compounds, with a focus on their potential chemotherapeutic applications. Acknowledgments This study was supported by AIPRAS Onlus (Associazione Italiana per la Promozione delle Ricerche sull’Ambiente e la Salute umana). Author Contributions All authors contributed to the draft of the article and approved the final manuscript Conflicts of Interest The authors declare no conflict of interest. The authors declare no conflict of interest. 12 Antisweet activity [35] 13 Antisweet activity [35] 14 Antisweet activity [35] 15 Antisweet activity [36] 16 Antisweet activity [36] 17 Antisweet activity [36] 18 Antisweet activity [36] 19 Antisweet activity [31] Pharmacokinetic study: determination of gymnemagenin in rat plasma using HPLC-MS/MS [66] 20 Antisweet activity [31] 27 Inhibition of the 11β-hydroxysteroid dehydrogenase type 1 [63,66] 28 Hypoglycemic and antihyperglycemic effect in rats [61] 29 Hypoglycemic and antihyperglycemic effect in rats [61] 30 Hypoglycemic and antihyperglycemic effect in rats [61] 31 Hypoglycemic and antihyperglycemic effect in rats [61] 32 Increase of serum glucose level in oral glucose-loaded rats [46,47] 33 Increase of serum glucose level in oral glucose-loaded rats [46,47] 34 Glucose uptake in rat small intestinal fragment [37] 35 Glucose uptake in rat small intestinal fragment [37] 36 Glucose uptake in rat small intestinal fragment [37] 37 Glucose uptake in rat small intestinal fragment [37] 39 Antisweet activity [34] 40 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [46,47] 41 Antisweet activity [34] 42 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [46,47] 43 Antisweet activity Glucose uptake in rat small intestinal fragment [34] [37,47,59] 44 Inhibitory effects on human tumor cell lines (A549, SK-OV-3, SK- MEL-2, and HCT15) in vitro using the sulforhodamine B (SRB) assay [55] 46 In vivo antitumor-promoting activity in mouse skin tumor [50] Inhibition of the tumor-promoting action of 12-O- tetradecanoylphorbol 13-acetate [48,49] Inhibition of phospholipid synthesis by 12-O-tetradecanoylphorbol-13- acetate [67] In vitro in human uterus cancer cells Anti-inflammatory activity and also to inhibit liver carcinogenesis and tumor growth [51] [51] Molecules 2014, 19 Molecules 2014, 19 10978 8. Liu, A.G.; Cui, Y.; Zhu, Y.D.; Gao, W.; Kong, C.H.; Xu, X.H. Allelochemicals and mechanism of weed-suppressing activity from allelopathic rice. In Proceedings of the International Forum on Green Chemical Science & Engineering and Process Systems Engineering, Tianjin, China, 8–10 October 2006; pp. 546–549. 9. Kaufman, P.B.; Cseke, L.J.; Warber, S.; Duke, J.A.; Brielmann, H.L. Natural Products from Plants; CRC Press: Boca Raton, FL, USA 1999. 9. Kaufman, P.B.; Cseke, L.J.; Warber, S.; Duke, J.A.; Brielmann, H.L. Natural Products from Plants; CRC Press: Boca Raton, FL, USA 1999. 10. Fiehn, O. Metabolomics-the link between genotypes and phenotypes. Plant Mol. Biol. 2002, 48, 155–171. 11. Dixon, R.A. Natural products and plant disease resistance. Nature 2001, 411, 843–847. 12. Canter, P.H.; Thomas, H.; Ernst, E. Bringing medicinal plants into cultivation: Opportunities and challenges for biotechnology. Trends Biotechnol. 2005, 23, 180–185. 13. Rates, S.M.K. Plants as sources of drugs. Toxicon 2001, 39, 603–613. 14. Raskin, I.; Ribnicky, D.M.; Komarnytsky, S.; Ilic, N.; Poulev, A.; Borisjuk, N.; Brinker, A.; Moreno, D.A.; Ripoll, C.; Yakoby, N.; et al. Plants and human health in the twenty-first century. Trends Biotechnol. 2002, 20, 522–531. 15. Balandrin, M.F.; Klocke, J.A. Medicinal, Aromatic and Industrial Materials from Plants. In Biotechnology in Agriculture and Forestry; Springer Verlag: Berlin, Germany, 1981; Volume 40, pp. 1–35. 16. Newman, D.J.; Cragg, G.M. Natural products as sources of new drugs over the last 25 years. J. Nat. Prod. 2008, 70, 461–477. 17. Dzubak, P.; Hajduch, M.; Vydra, D.; Hustova, A.; Kvasnica, M.; Biedermann, D.; Markova, L.; Urban, M.; Sarek, A. Pharmacological activities of natural triterpenoids and their therapeutic implications. J. Nat. Prod. Rep. 2006, 23, 394–411. 18. Dewick, P.M. Medicinal Natural Products, 3rd Ed.; John Wiley & Sons Ltd: Chichester, West Sussex, UK, 2009; p. 187. 19. Breitmaier, E. Terpenes; Wiley-VCH, Weinheim, Germany, 2006. 20. Gills, P.M., Jr. Revised section F: Natural products and related compounds. Pure Appl. Chem. 1999, 71, 587–593. 21. Fraga, B.M. Natural sesquiterpenoids. Nat. Prod. Rep. 2008, 25, 1180–1209. 22. Hanson, J.R. Diterpenoids. Nat. Prod. Rep. 2007, 24, 1332–1341. 23. Connolly, J.D.; Hill, R.A. Triterpenoids. Nat. Prod. Rep. 2008, 25, 794–830. 24. Lois, L.M.; Campos, N.; Putra, S.R.; Danielsen, K.; Rohmer, M.; Boronat, A. Cloning and characterization of a gene from Escherichia coli encoding and transketolase-like enzyme that catalyze the synthesis of ᴅ-1-deoxyxylulose 5-phosphate, a common precursor for isoprenoid, thiamin and pyridoxol biosynthesis. Proc. Natl. Acad. References 1. Oksman-Caldentey, K.M.; Inze, D. Plant cell factories in the post-genomic era: New ways to produce designer secondary metabolites. Trends Plant Sci. 2004, 9, 433–440. 1. Oksman-Caldentey, K.M.; Inze, D. Plant cell factories in the post-genomic era: New ways to produce designer secondary metabolites. Trends Plant Sci. 2004, 9, 433–440. 2. Duradeva, N.; Pichersky, E. Metabolic engineering of plant volatiles. Curr. Opin. Biotech. 2008, 19, 1–9. 2. Duradeva, N.; Pichersky, E. Metabolic engineering of plant volatiles. Curr. Opin. Biotech. 2008, 19, 1–9. 3. Picman, J.; Picman, A.K. Autotoxicity in Parthenium hysterophorus and its possible role in control of germination. Biochem. Sys. Ecol. 1984, 12, 287–292. 3. Picman, J.; Picman, A.K. Autotoxicity in Parthenium hysterophorus and its possible role in control of germination. Biochem. Sys. Ecol. 1984, 12, 287–292. 4. Inderjit; Keating, K.I. Allelopathy: Principles, procedures, processes, and promises for biological control. Adv. Agron. 1999, 67, 141–231. 4. Inderjit; Keating, K.I. Allelopathy: Principles, procedures, processes, and promises for biological control. Adv. Agron. 1999, 67, 141–231. 5. Montesinos, E. Development, registration and commercialization of microbial pesticides for plant protection. Int. Microbiol. 2003, 6, 245–252. 5. Montesinos, E. Development, registration and commercialization of microbial pesticides for plant protection. Int. Microbiol. 2003, 6, 245–252. 6. Dayan, F.E.; Duke, S.O. Biobased herbicides. In Proceedings of the 233rd ACS National Meeting, Chicago, IL, USA, 25–29 March 2007; AGRO-200. 6. Dayan, F.E.; Duke, S.O. Biobased herbicides. In Proceedings of the 233rd ACS National Meeting, Chicago, IL, USA, 25–29 March 2007; AGRO-200. 7. Macias, F.A.; Molinillo, J.M.G.; Varela, R.M.; Galindo, J.C.G. Allelopathy—a natural alternative for weed control. Pest Manag. Sci. 2007, 63, 327–348. 7. Macias, F.A.; Molinillo, J.M.G.; Varela, R.M.; Galindo, J.C.G. Allelopathy—a natural alternative for weed control. Pest Manag. Sci. 2007, 63, 327–348. Molecules 2014, 19 Sci. USA 1998, 95, 2015–2110. 25. Gildemeister, E.; Hoffmann, F. In Die ätherischen Öle, 4th ed.; Akademie Verlag: Berlin, Germany, 1960; pp. 1–7. 26. Sandermann, W. Naturharze, Terpentinöl, Tallöl; Springer Verlag: Berlin, Germany 27. Osbourn, A.E. Saponin and olant defence-a soap story. Trends Plant Sci. 1996, 1, 4–9. 28. Osbourn, A.E. Preformed antimicrobial compound and plant defense against fungal attack. Plant Cell 1996, 8, 1821–1831. Molecules 2014, 19 10979 29. Harmatha, J. Chemo-ecological role spirostanol saponins in the interaction between plants and insect. In Saponins in Food, Feedstuffs and Medicinal Plants; Olezsek, W., Marston, A., Eds.; Kluwer Academic: Dordrecht, The Netherlands, 2000. 30. Yoshikawa, K.; Nakagawa, M.; Yamamoto, R.; Arihara, S.; Matsuura, K. Studies on taste modifiers. II. Purification and structure determination of gymnemic acids, antisweet active principle from Gymnema sylvestre leaves. Tetrahedron Lett. 1989, 30, 1547–1550. 31. Yoshikawa, K.; Amimoto, K.; Arihara, S.; Matsuura, K. Structure studies of new antisweet constituents from Gymnema sylvestre. Tetrahedron Lett. 1989, 30, 1103–1106. 32. Kazujo, Y.; Kayoko, A.; Shigenobu, A.; Kouji, M. Gymenmic acids V, VI and VII from Gur-ma, the leaves of Gymnema sylvestre R. Br. Chem. Pharm. Bull. 1989, 37, 852–854. 33. Kurihara, K. Inhibition of cyclic 3',5'-nucleotide phosphodiesterase in bovine taste papillae by bitter taste stimuli. Febs Lett. 1972, 27, 279–281. 34. Yoshikawa, K.; Arihara, S.; Matsuura, K. A new type of antisweet principles occurring in Gymnema sylvestre. Tetrahedron Lett. 1991, 32, 789–792. 35. Yoshikawa, K.; Nakagawa, M.; Yamamoto, R.; Arihara, S.; Matsuura, K. Antisweet natural products. V. Structures of gymnemic acids VIII-XII from Gymnema sylvestre R. Br. Chem. Pharm. Bull. 1992, 40, 1779–1782. 36. Yoshikawa, K.; Kondo, Y.; Arihara, S.; Matsuura, K. Antisweet natural products. IX. Structures of gymnemic acids XV-XVIII from Gymnema sylvestre R. Br. Chem. Pharm. Bull. 1993, 41, 1730–1732. 37. Masuyuki, Y.; Toshiyuki, M.; Hisashi, M. Medicinal foodstuffs. X. Structures of new triterpene glycosides, Gymnemosides-c, -d, -e, and -f, from the leaves of Gymnema sylvestre R. Br.: Influence of Gymnema glycosides on glucose uptake in rat small intestinal fragmentes. Chem. Pharm. Bull. 1997, 45, 2034–2038. 38. Kimura, I.; Zasshi, Y. Medical benefits of using natural compounds and their derivatives having multiple pharmacological actions. Actions 2006, 126, 133–143. 39. Henkel, T.; Brunne, R.M.; Muller, H.M.; Reichel, F. Statistical investigation into the structural complementary of natural products and synthetic compound. Angew. Chem. Int. 1999, 38, 643–647. 40. Eggersdofer, M. Terpenes. 45. Stocklin, W. Gymnemagenin, vermutliche struktur Glykoside und Aglykone, 289. Mitteilung. Helv. Chim. Acta 1967, 50, 491–503. Molecules 2014, 19 In Ullmann’s Encyclopedia of Industrial Chemistry, Electronic Release; Wiley-VCH, Weinheim, Germany, 2005. 41. Duke, S.O.; Romagni, J.G.; Dayan, F.E. Natural products as sources for new mechanisms of herbicidal action. Crop Prot. 2000, 19, 583–589. 42. Catchpole, O.J.; von Kamp, J.C.; Grey, J.B. Extraction of squalene from shark liver oil in a packed column using supercritical carbon dioxide. Ind. Eng. Chem. Res. 1997, 36, 4318–4324. 43. Pietsch, A.; Jaeger, P. Concentration of squalene from shark liver oil by short-path distillation. Eur. J. Lipid. Sci. Technol. 2007, 109, 1077–1082. 44. Eisenreich, W.; Rohdich, F.; Bacher, A. Deoxyxylulose phosphate pathway to terpenoids. Trends Plant Sci. 2001, 6, 78–84. 45. Stocklin, W. Gymnemagenin, vermutliche struktur Glykoside und Aglykone, 289. Mitteilung. Helv. Chim. Acta 1967, 50, 491–503. Molecules 2014, 19 10980 46. Yoshikawa, M.; Murakami, T.; Kadoya, M.; Li, Y.; Murakami, N.; Yamahara, J.; Matsuda, H. Medicinal foodstuffs. IX. The inhibitors of glucose absorption from the leaves of Gymnema sylvestre R. Br. (Asclepiadaceae): Structures of gymnemosides a and b. Chem. Pharm. Bull. 1997, 45, 1671–1676. 46. Yoshikawa, M.; Murakami, T.; Kadoya, M.; Li, Y.; Murakami, N.; Yamahara, J.; Matsuda, H. Medicinal foodstuffs. IX. The inhibitors of glucose absorption from the leaves of Gymnema sylvestre R. Br. (Asclepiadaceae): Structures of gymnemosides a and b. Chem. Pharm. Bull. 1997, 45, 1671–1676. 47. Murakami, N.; Murakami, T.; Kadoya, M.; Matsuda, H.; Yamahara, J.; Yoshikawa, M. New hypoglycemic constituents in “gymnemic acid” from Gymnema sylvestre. Chem. Pharm. Bull. 1996, 44, 469–471. 48. Nishino, H.; Nishino, A.; Takayasu, J.; Hasegawa, T.; Iwashima, A.; Hirabayashi, K.; Iwata, S.; Shibata, S. Inhibition of the tumor-promoting action of 12-O-tetradecanoylphorbol 13-acetate by some oleanane-type triterpenoid compounds. Cancer Res. 1988, 48, 5210–5521. 49. Shibata, S. Antitumor-promoting and anti-inflammatory activities of licorice principles and their modified compounds. In ACS Symposium Series Food Phytochemicals for Cancer Prevention II; American Chemical Society: Washington, DC, USA, 1994; Volume 547, pp. 308–321. 50. Nishino, H.; Shibata, S.; Hirabayashi, K.; Iwata, S. Antitumor-promoting activity of glycyrrhetinic acid-related compounds. Kyoto-Furitsu Ika Daigaku Zasshi 1986, 95, 1563–1566. 51. Satomi, Y.; Nishino, H.; Shibata, S. Glycyrrhetinic and related compounds induce G1 arrest and apoptosis in human hepatocellular carcinoma HepG2. Anticancer Res. 2005, 25, 4043–4047. 52. Ohigashi, H.; Takamura, H.; Koshimizu, H.; Tokuda, H.; Ito, Y. Search for possible antitumor promoters by inhibition of 12-O-tetradecanoylphorbol-13-acetate-induced Epstein-Barr virus activation. Ursolic acid and oleanolic acid from an anti-inflammatory. Cancer Lett. 1986, 30, 143–151. 53. Molecules 2014, 19 Lee, J.S.; Yoo, H.S.; Suh, Y.G.; Jung, J.K.; Kim J.W. Structure-activity relationship of pentacylic triterpene esters from Uncaria rhynchophylla as inhibitors of phospholipase Cγ1. Planta Med. 2008, 74, 1481–1487. 54. Skehan, P.; Stroreng, R.; Scudiero, D.; Monks, A.; Mcmahon, J.; Vistica, D.; Warren, J.T.; Bokesch, H.; Kenney, S.; Boyd, M.R. New colorimetric cytotoxicity assay for anticancer-drug screening. J. Nat. Cancer 1990, 82, 1107–1112. 55. Lee, I.K.; Choi, S.U.; Lee, K.R. Triterpene saponins from Pleurospermum kamtschaticum and their biological activity. Chem. Pharm. Bull. 2012, 60, 1011–1018. 56. Liu, H.M.; Kiuchi, F.; Tsuda, Y. Isolation and structure elucidation of gymnemic acids, antisweet principles of Gymnema sylvestre. Chem. Pharm. Bull. 1992, 40, 1366–1375. 57. Yoshisuke, T.; Fumiyuki, K.; Hong-Min, L. Establishment of the structure of gymenmagenin by X-ray analysis and the structure of deacylgymnemic acid. Tetrahedron Lett. 1989, 30, 361–362. 58. Zarrelli, A.; Ladhari, A.; Haouala, R.; di Fabio, G.; Previtera, L.; DellaGreca, M. New acylated oleane and lupane triterpenes from Gymnema sylvestre. Helv. Chim. Acta 2013, 96, 2200–2206. 59. Sahu, N.P.; Mahato, S.B.; Sarkar, S.K.; Poddar, G. Triterpenoid saponins from Gymnema sylvestre. Phytochemistry 1996, 41, 1181–1185. 60. Zarrelli, A.; Della Greca, M.; Ladhari, A.; Haouala, R.; Previtera, L. New Triterpenes from Gymnema sylvestre. Helv. Chim. Acta 2013, 96, 1036–1045. 61. Sarkar, S.K. Potential Hypoglycemic and Antihyperglycemic Triterpenold Saponins from Gymnema sylvestre. In Proceedings of 210th ACS National Meeting, Chicago, IL, USA, August 1995; In Book of Abstracts; AGFD-239. Molecules 2014, 19 10981 62. García-Granados, A.; Lopez, P.E.; Melguizo, E.; Parra, A.; Simeo, Y. Remote hydroxylation of methyl groups by regioselective cyclopalladation. Partial synthesis of hyptatic acid-A. J. Org. Chem. 2007, 72, 3500–3509. 62. García-Granados, A.; Lopez, P.E.; Melguizo, E.; Parra, A.; Simeo, Y. Remote hydroxylation of methyl groups by regioselective cyclopalladation. Partial synthesis of hyptatic acid-A. J. Org. Chem. 2007, 72, 3500–3509. 63. Spasov, A.A.; Samokhina, M.P.; Bulanov, A.E. Medicinal plants antidiabetic properties of Gymnema sylvestre (a review). Pharm. Chem. J. 2008, 42, 29–31. 64. Ye, W.C.; Liu, X.; Zhao, S.X.; Che, C.T. Triterpenes from Gymnema sylvestre growing in China. Biochem. Syst. Ecol. 2001, 29, 1193–1195. 65. Sugihara, Y.; Nojima, H.; Matsuda, H.; Murakami, T.; Yoshikawa, M.; Kimura, I. Antihyperglycemic effects of gymnemic acid IV, a compound derived from Gymnema sylvestre leaves in streptozotocin-diabetic mice. J. Asian Nat. Prod. Res. 2000, 2, 321–327. 66. Maser, E.; Blum, A. Selektiver Inhibitor der 11β-Hydroxysteroid Dehydrogenase. DE 102004040690 A1, 2 March 2006. 67. © 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). Molecules 2014, 19 Shibata, S.; Nishino, H.; Hirabayashi, K.; Iwata, S. Epicarcinogen Inhibitors Containing Oleanane Triterpenes. JP 63057519 A, 12 March 1988. © 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). © 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). © 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
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Pengaruh Kompensasi, Motivasi Terhadap Kinerja Pegawai Melalui Variabel Intervening Kepuasan Kerja Dan Perspektif Maqashid Syariah Pada RSUD Dr. Pirngadi Kota Medan
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Pengaruh Kompensasi, Motivasi Terhadap Kinerja Pegawai Melalui Variabel Intervening Kepuasan Kerja dan Perspektif Maqashid Syariah Pada RSUD Dr. Pirngadi Kota Medan Nurhidayanti1), Azhari Akmal Tarigan2), Syukri Albani Nasution3) 1,2,3 Program Pascasarjana Ekonomi Syariah, UIN Sumatera Utara *Email korespondensi: nurynurhidayantii@gmail.com Available at https://jurnal.stie-aas.ac.id/index.php/jie Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2995-3002 DOI: http://dx.doi.org/10.29040/jiei.v8i3.6781 DOI: http://dx.doi.org/10.29040/jiei.v8i3.6781 DOI: http://dx.doi.org/10.29040/jiei.v8i3.6781 Abstract Performance or performance is a description of the level of achievement of the implementation of a program of activities or policies in realizing the goals, objectives, vision and mission of the organization as outlined through the strategic planning of an organization. Employee performance is the result of work in quality and quantity achieved by an employee in carrying out his duties in accordance with with the responsibilities assigned to him. The purpose of this study was to determine the direct and indirect effects of compensation, motivation, job satisfaction on performance at RSUD Dr. Pirngadi Medan City. This research method uses a quantitative approach with path analysis and uses the SPSS version 20.0 program. This study uses a questionnaire with a sample of 100 respondents. The results of this study indicate that the compensation variable, motivation, on job satisfaction through performance is 54.5% and the remaining 45.5% is influenced by other variables. While the compensation variable, motivation on job satisfaction is 55.7% and the remaining 44.3% is influenced by other variables. intervention at RSUD Dr. Pirngadi Medan City with 95% confidence level and 5% error rate. Maqashid al-shari'ah can be interpreted as God's goal as shari' in establishing an integrated law for his servants. The essence of maqashid al-syari'ah is to realize goodness while avoiding evil or attracting benefits (maslahah). Keywords: Compensation, Motivation, Job Satisfaction, Performance, Maqashid Syariah Saran sitasi: Nurhidayanti., Tarigan, A. A., & Nasution, S. A. (2022). Pengaruh Kompensasi, Motivasi Terhadap Kinerja Pegawai Melalui Variabel Intervening Kepuasan Kerja dan Perspektif Maqashid Syariah Pada RSUD Dr. Pirngadi Kota Medan. Jurnal Ilmiah Ekonomi Islam, 8(03), 2995-3002. doi: http://dx.doi.org/10.29040/jiei.v8i3.6781 Saran sitasi: Nurhidayanti., Tarigan, A. A., & Nasution, S. A. (2022). Pengaruh Kompensasi, Motivasi Terhadap Kinerja Pegawai Melalui Variabel Intervening Kepuasan Kerja dan Perspektif Maqashid Syariah Pada RSUD Dr. Pirngadi Kota Medan. Jurnal Ilmiah Ekonomi Islam, 8(03), 2995-3002. doi: http://dx.doi.org/10.29040/jiei.v8i3.6781 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2996 Keberadaan sumber daya manusia merupakan hal yang tidak terpisahkan dalam sebuah perusahaan, baik perusahaan dalam skala besar maupun kecil. Sumber daya manusia yang ada di dalam perusahaan menjadi saling terkait dengan setiap bagian perusahaan dan memiliki peran yang sangat penting untuk keberlangsungan eksistensi perusahaan. Perusahaan jasa juga tidak terlepas dari usaha untuk selalu meningkatkan kinerja karyawan.Peningkatan kinerja karyawan secara terus menerus juga di terapkan pada organisasi yang bergerak di bidang jasa seperti rumah sakit. Rumah sakit selalu dituntut untuk memberikan pelayanan optimal kepada pasien dan meningkatkan serta mempertahankan kinerja karyawan agar selalu baik. Mengingat kinerja karyawan tidak selalu mengalami kenaikan, ada kalanya kinerja karyawan juga mengalami penurunan. (Dimas dan Rini, 2015) Disamping itu, menurut Nurul R, masih ada beberapa pegawai yang dibebani tugas ganda karena keterbatasan sumber daya yang dimiliki sehingga banyak pegawai yang masih merangkap jabatan dan tugas. Banyaknya tugas dan tanggung jawab yang diberikan kepada pegawai menyebabkan hasil yang dicapai menjadi kurang maksimal karena pegawai hanya mempunyai waktu yang sedikit untuk menyelesaikan banyak tugas. Belum dilaksanakannya job description yang sudah dibuat secara maksimal oleh pegawai rumah sakit akan berdampak pada hasil penilaian kinerja sebagai bahan evaluasi bagi manajemen rumah sakit. Perlu dilakukan upaya untuk memotivasi serta memberikan kompensasi pegawai agar mampu melaksanakan tugasnya dengan baik sesuai job description yang sudah ditetapkan. Apabila ini tidak dilakukan maka akan berdampak pada penurunan kualitas kerja serta menurunnya kualitas pelayanan kesehatan yang selamaini sudah cukup baik. Upaya memotivasi dan memberikan kompensasi dilakukan untuk meningkatkan prestasi kerja karyawan sesuai dengan tugasnya masing-masing. Salah satu pelayanan jasa yang bergerak dibidang kesehatan yang ada di Provinsi Sumatera Utara adalah RSUD Dr. Pirngadi Kota Medan. Menurut Frans, selaku pegawai di Instalasi Sistem Informasi Rumah Sakit Dr. Pirngadi Kota Medan, para pegawai pada umumnya belum menunjukkan kinerja yang optimal, hal ini masih sangat banyak yang perlu ditingkatkan dari segi kinerja pegawai yang ada di rumah sakit. Dikarenakan masih seringnya pegawai yang melalaikan kedisiplinan waktu, seperti tidak tepat waktu saat datang, atau hanya absen saja, namun mereka para pegawai memiliki loyalitas tinggi dan saling tolong-menolong. Uraian latar belakang masalah diatas menjadi dasar penulis tertarik meneliti kinerja pegawai dengan kajian yang lebih kompleks dan mendalam dengan judul “Analisis Kinerja Pegawai Ditinjau Dari Perspektif Maqasid Syariah Di RSUD Dr. Pirngadi Kota Medan” 1. PENDAHULUAN sumber saya manusia yang memiliki kinerja yang tinggi. Keberhasilan suatu organisasi ditentukan oleh sejauh mana tujuan organisasi yang telah direncanakan dapat dicapai baik organisasi pemerintah maupun swasta. Untuk mencapai tujuan tersebut keterlibatan berbagai unsur dalam organisasi sangat penting, diantaranya unsur sumber daya manusia. Organisasi dituntut untuk dapat mengelola sumber daya manusia. Walaupun didukung oleh sarana dan prasarana yang baik namun tidak didukung oleh sumber daya manusia maka kegiatan dalam sebuah organisasi tidak akan berjalan dengan baik. Sumber daya manusia merupakan penentu keberhasilan dalam sebuah organisasi. Organisasi membutuhkan sumber daya manusia yang mampu bekerja lebih baik dan lebih cepat sehingga diperlukan Kinerja (prestasi kerja) merupakan gambaran pencapaian pelaksanaan (achievement) suatu program kegiatan perencanaan strategis dan operasional organisasi (efforts) oleh seseorang atau kelompok orang dalam suatu organisasi. Kinerja tenaga kesehatan merupakan masalah yang sangat penting untuk dikaji dalam rangka mempertahankan dan meningkatkan pembangunan kesehatan. Kajian mengenai kinerja memberikan kejelasan faktor-faktor yang berpengaruh terhadap kinerja individu dan organisasi. (Maiyulia Fitri, 2017) Untuk mencapai kinerja yang lebih baik perusahaan harus dapat mengelola sumber daya yang ada. Pengelolaan sumber daya manusia yang baik menjadi hal penting untuk terus ditingkatkan. Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2996 3.1. Hasil Penelitian Pada penelitian ini, peneliti menggunakan analisis uji asumsi klasik yang dilakukan terdiri dari uji normalitas, uji multikolinearitas, dan uji heteroskedasitas. Uji Heteroskedasitas yang sesuai dengan kondisi/situasi/perasaan yang dialami langsung oleh responden. Selanjutnya data sekunder sebagai alat pendukung penelitian ini bersumber dari berbagai literatur seperti jurnal-jurnal, buku-buku yang relevan, maupun berita online yang mendukung fakta. Uji Heterokedasitas bertujuan untuk menguji apakah terjadi kesamaan varians dan residul satu pengamatan ke pengamatan yang lain. Dengan hasil Uji Heterokedasitas (I) Kepuasan Kerja dan Uji Heterokedasitas (II) Kinerja g j ( ) p Kerja dan Uji Heterokedasitas (II) Kinerja Dengan hasil Uji Normalitas (I) Kepuasan Kerja dan Uji Normalitas (II) Kinerja Jurnal Ilmiah Ekonomi Islam, Uji Normalitas Uji ini dilakukan saat belum melakukan analisis sebenarnya. Dengan menggunakan program SPSS versi 20. Model regresi dikatakan baik jika memiliki distribusi normal atau mendekati normal. Uji ini terlihat dari grafik histogram. Data berdistribusi normal apabila bentuk kurva sisi kiri dan kanannya hamper menyerupai lonceng yang sempurna dan kemiringan kurvanya cenderung seimbang. Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 sebenarnya. Dengan menggunakan program SPSS versi 20. Model regresi dikatakan baik jika memiliki distribusi normal atau mendekati normal. Uji ini terlihat dari grafik histogram. Data berdistribusi normal apabila bentuk kurva sisi kiri dan kanannya hamper menyerupai lonceng yang sempurna dan kemiringan kurvanya cenderung seimbang. Dengan hasil Uji Normalitas (I) Kepuasan Kerja dan Uji Normalitas (II) Kinerja Uji Multikolinearitas Hasil Uji Multikolinearitas pada penelitian ini dapat dilihat sebagai berikut: Dengan hasil Uji Normalitas (I) Kepuasan Kerja dan Uji Normalitas (II) Kinerja 2. METODE Jenis penelitian yang akan dilakukan pada penelitian iniadalah deskripsi kuantitatif. Deskripsi kuantitatif adalah penelitian yang menggunakan data- data dan angka-angka yang telah diperoleh dari sumber data lalu hasil temuan dideskripsikan secara sistematik, faktual dan akurat mengenai fakta-fakta dan sifat-sifat suatu objek sehingga mendapatkan suatu gambaran yang jelas dari temuan penelitian. Adapun lokasi penelitian yang peneliti lakukan adalah pegawai RSUD Dr. Pirngadi Kota Medan yang berada di Jl. Prof. HM. Yamin Sh No. 47, Perintis, Kec. Medan Timur, Kota Medan, Sumatera Utara. Waktu penelitian adalah Januari 2022 –Mei 2022. Populasi yang menjadi objek penelitian ini memiliki kriteria: 1. Pegawai non medis yang ada di rumah sakit pringadi. Jumlah pegawai yang ada di Rumah Sakit Pringadi dengan kriteria tersebut adalah 1793 pegawai. Sumber data penelitian bersumber dari data primer dan skunder. Data primer penelitian ini diperoleh dari respon/jawaban dari pertanyaan-pertanyaan kuesioner Kondisi tersebut terjadi tentu saja bukan tanpa sebab. Paling tidak ada faktor/variabel yang potensial mempengaruhi hal itu seperti motivasi kerja dan kompensasi. Motivasi kerja sebagai ekspresi dari dorongan, keinginan, dan tingkat kesediaan seseorang untuk memenuhi kebutuhan dan mencapai tujuan tertentu dengan sebaik-baiknya. Motivasi akan mendorong karyawan untuk melakukan pekerjaan dengan sebaik-baiknya sesuai standar, berkualitas tinggi, dan tepat waktu, yang kemudian menghasilkan kinerja yang optimal (George, J.M. dan Jones, 2005). Pernyataan ini diperkuat dengan adanya penelitian yang dilakukan oleh Rahmayanti bahwa motivasi yang tinggi dapat memberikan dampak positif bagi kinerja karyawan karena tanpa motivasi yang tinggi dapat memberikan dampak positif bagi kinerja karyawan karena tanpa motivasi yang baik dari karyawan akan sulit untuk perusahaan mencapai hasil yang optimal. (Rahmayanti,2015) Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2997 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2997 Uji Multikolinearitas Hasil Uji Multikolinearitas pada penelitian ini dapat dilihat sebagai berikut: Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2998 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2998 yang diberikan sesuai dengan keinginan pegawai baik yang berbentuk kompensasi financial maupun kompensasi non financial maka akan muncul kepuasan kerja pada pegawai. Oleh karena itu kompensasi merupakan variabel yang penting untuk diperhatikan dalam memprediksi kepuasan kerja. Penelitian ini sesuai dengan penelitian yang dilakukan oleh Akmal dan Tamimi, yang menunjukkan pengaruh kompesasi terhadap kinerja (Akmal dan Tamimi, 201). Penelitian ini mendukung teori yang dikemukakan Hasibuan yang menyatakan bahwa salah satu tujuan pemberian kompensasi adalah sebagai kepuasan kerja. Dari hasil tersebut terdapat nilai tolerance pada masing-masing variabel yakni: kompensasi sebesar 0,755, motivasi sebesar 0,699, kepuasan kerja sebesar 0,690, dan nilai VIF yakni kompensasi sebesar 1,325, motivasi 1,325 dan kepuasan kerja 1.450 lebih kecil dari 10. Dengan begitu dapat disimpilkan antar variabel tidak terjadi multikolinearitas. Hasil analisis Koefisien Determinasi pada penelitian ini adalah sebagai berikut: 3.2.2. Pengaruh Motivasi (X2) terhadap Kepuasan Kerja (Z) Pada tabel tersebut terlihat nilai korelasinya atau yang disimbolkan dengan R sebesar 0.545 dan besarnya pesentase atau koefisien determinan (R square) antara pengaruh variabel bebas (kompensasi, motivasi, kepuasan kerja) sebesar 0.297 atau 29.7% pengaruh kompensasi motivasi dan kepuasan kerja terhadap kinerja pegawai dalam konteks maqashid syariah di RSUD Dr. Pirngadi kota Medan. Hasil penelitian menunjukkan bahwa motivasi berpengaruh signifikan terhadap kepuasan kerja (0.000 < 0.05) dan thitung lebih besar dari ttabel (4.124 > 1.660), maka kesimpulannya adalah Ho ditolak Ha diterima. Berdasarkan hasil uji hipotesis terbukti bahwa motivasi memiliki pengaruh positif dan signifikan terhadap kepuasan kerja. Artinya semakin baik motivasi yang diberikan kepada pegawai maka kepuasan kerja pegawai akan semakin meningkat. Pada penelitian ini motivasi dilihat dari lima ringkat kebutuhana yaitu fisiologis, rasa aman, sosial, penghargaan, dan aktualisasi diri. Kebutuhan sosial, rasa aman, serta kebutuhan fisologis menjadi pengukur tertinggi motivasi pegawai, terutama suasana kekeluargaan dalam bekerja, fasilitas transportasi ke tempat kerja seerta diberikannya uang kehadiran dan tunjangan kinerja berdampak pada kepuasan kerja pegawai. Kondisi ini ditunjukkan dengan tingginya tingkat kepuasan kerja pegawai terutama terkait dengan pekerjaannya itu sendiri dan pembayaran serta kemampuan berkomunikasi, bekerjasama, ketepatan waktu dan ketelitian dalam menyelesaikan pekerjaan. Semakin baik suasana kekeluargaan dalam bekerja, fasilitas transportasi serta uang kehadiran dan tunjangan kinerja yang diberikan organisasi menyebabkan semakin puas pegawai terhadap pekerjaannya saat ini serta semakin meningkatnya kinerja pegawai baik dari segi kualitas dan kuantitas. Hasil penelitian ini mendukung penelitian yang dilakukan oleh Brahmasari yang menyatakan bahwa motivasi berpengaruh terhadap kepuasan kerja. Pengaruh Langsung Pengaruh tidak Langsung Pengaruh tidak Langsung (Y) Hasil penelitian menunjukkan bahwa motivasi berpengaruh signifikan terhadap kinerja (0.000 < 0.05) dan thitung lebih besar dari ttabel (4.230 > 1.660), maka kesimpulannya adalah Ho ditolak Ha diterima. Motivasi pada dasarnya dapat mendorong karyawan untuk berbuat semaksimal mungkin dalam melaksanakan tugasnya karena meyakini bahwa dengan keberhasilan organisasi mencapai tujuan dan berbagai sasarannya. Kepentingan pribadi pada anggota organisasi tersebut akan terpelihara. Hasil penelitian ini mendukung pendapat Sedarmayanti yang menyatakan bahwa motivasi merupakan kesediaan mengeluarkan tingkat upah tinggi ke arah tujuan organisasi yang dikondisikan oleh kemampuan upaya untuk memenuhi kebutuhan individual. Bila seseorang termotivasi, ia akan mencoba kuat. Kebutuhan sesuatu keadaan internal tampak menarik. Motivasi merupakan timbulnya perilaku yang mengarah pada tujuan tertentu dengan penuh komitmen sampai tercapainya tujuan yang dimaksudkan. Berdasarkan hasil analisis menunjukkan bahwa motivasi berpengaruh signifikan terhadap kinerja pegawai. Motivasi merupakan variabel penting dimana motiavsi perlu mendapat perhatian yang besar pula bagi organisasi dalam peningkatan kinerja pegawainya. Dalam hal ini, semakin kuat dorongan atau motivasi dan semangat akan semakin tinggi kinerjanya. Mangkunegara menyatakan faktor yang mempengaruhi kinerja adalah motivasi, sesua dengan penelitian (Sugiharjo dan Aldata, 2018). motivasi kerja berpengaruh signifikan terhadap kinerja karyawan. 3.2.3. Pengaruh Kepuasan Kerja (Z) terhadap Kinerja (Y) semakin rendah kinerja pegawai tersebut. Hal ini dapat menyebabkan pegawai berpindah tempat keperusahaan lain. Sedangkan jika diberikan kompensasi yang semakin meningkat, pegawai tersebut akan terus memberikan kinerja yang semakin meningkat di perusahaan tersebut tanpa berpindah ke perusahaan lain. Berdasarkan hasil analisa menunjukkan, kompensasi berpengaruh positif dan signifikan terhadap kinerja. Hasil ini menunjukkan bahwa dengan kebijakan pemberian kompensasi yang tepat dan diterima oleh pegawai maka akan meningkatkan kinerja pegawai RSUD Dr. Pirngadi Kota Medan. Hasil penelitian menunjukkan bahwa kepuasan kerja tidak berpengaruh signifikan terhadap kinerja (0.370 > 0.05) dan thitung lebih kecil dari ttabel (-0.901 < 1.660), maka kesimpulannya adalah Ho diterima Ha ditolak. Berkaitan dengan kerangka teori yang terlihat bahwa faktor-faktor kepuasan kerja yang meliputi gaji memadai, jaminan kesejahteraa karyawan, jaminan sosial, macam-macam tunjangan, pekerjaan yang menantang, kondisi kerja yang mendukung, rekan kerja mendukung promosi dan sebagainya tidak memiliki pengaruh terhadap kinerja pegawai pada RSUD Dr. Pirngadi Kota Medan. Walaupun demikian, penelitian ini memiliki kesamaan dengan hasil penelitian dari Mira et al. yang membuktikan bahwa kepuasan kerja memiliki hubungan positif namun hubungannya tidak terlalu kuat. Selain itu hasil penelitian Nabawi menunjukkan bahwa kepuasan kerja tidak berpengaruh secara signifikan terhadap kinerja pegawai. Hal ini kemungkinan disebabkan oleh tingginya nilai konstanta (nilai a) dan rendahnya nilai koefisien kepuasan kerja. 3.2. Pembahasan Hasil penelitian menunjukkan bahwa kompensasi berpengaruh signifikan terhadap kepuasan kerja (0.004 < 0.05) dan thitung lebih besar dari ttabel (2.936 > 1.660), maka kesimpulannya adalah Ho ditolak Ha diterima. Dengan adanya kompensasi Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 2999 3.2.3. Pengaruh Kepuasan Kerja (Z) terhadap Kinerja (Y) Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 3.2.6. Hubungan Maqashid Syariah terhadap Kinerja (Y) ditambahkan menjadi tujuh maqashid syariah, yaitu menjaga sosial dan menjaga lingkungan. Perkembangan masyarakat dan terdapat fenomena pengabdian bahkan sudah bersifat merusak lingkungan dan keadaan masyarakat, terdapat gagasan memperluas maqashid al-syariah dengan memelihara lingkungan (hifz albiah) dan memelihara sosial. Mulawarman, dkk, 2018) Konsep Indeks Maqashid Syariah, terdapat tiga tujuan syariah yang diambil dari konsep maqasid syariah, yaitu: (1) Tahzibul Fardi (Mendidik Individu), (2) Iqamah al Adl (Menegakkan keadilan), (3) Maslahah (Kepentingan publik). Namun pada perkembangan pemikiran kontemporer, saat ini terdapat pendapat mengenai maqashid syariah yang Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 terdapat pendapat mengenai maqashid syariah yang No Instrument Analisis Dengan Indikator Kinerja Alasan Maqashid Syariah Analisa 1 Disiplin/ Tepat waktu Hifdz Ad-din Hifdz al- mal Hukum Islam mengajarkan kita untuk melakukan pekerjaan sesuai dengan ketentuan yang berlaku. Berlaku adillah engkau dalam setiap keadaan seperti yang terkandung dalam Alquran Surah An-Nahl ayat 90 yang berbunyi: ِقُ رْ بٰى وَ يَنْهٰ ى عَ ن ْ اِ حْ سَ انِ وَ اِ يْتَ اۤئِ ذِ ى ال ْ عَ دْ لِ وَ ال ْ مُ رُ بِال ْ ۞ اِ نَّ اّٰلله َ يَأ رِ وَ ا َ مُ نْك ْ فَ حْ شَ اۤءِ وَ ال ْ ال َرُ وْ ن َّ ك َ مْ تَذ ُ ك َّ عَ ل َ مْ ل ُ بَغْ يِ يَعِ ظُ ك ْ ل ٩٠ Artinya: Sesungguhnya Allah menyuruh (kamu) berlaku Adil dan berbuat kebajikan, memberikan bantuan kepada kerabat, dan Dia melarang (melakukan) perbuatan keji, kemungkaran, dan permusuhan. Dia memberi pengajaran kepadamu agar kamu dapat mengambil pelajaran. Untuk itu pegawai yang menerapkan kedisiplinan dalam bekerja akan mendapatkan pengaruh positif seperti menerima reward/ naik gaji, mampu mempertahankan pekerjaan agar tidak dipecat, naik pangkat apabila pegawai tersebut mampu untuk melakukan pekerjaan dengan dengan baik sesuai dengan aturan yang berlaku. 3.2.6. Hubungan Maqashid Syariah terhadap Kinerja (Y) 2 Tanggung Jawab Hifdz Ad- din Karena dalam Islam diajarkan tentang bekerja penuh dengan tanggung jawab seperti yang terkandung dalam Alquran Surah At-Taubah Ayat 105 yang berbunyi: ى ٰ َۗ وَ سَ تُرَ دُّ وْ نَ اِ ل مُ ؤْ مِ نُوْ نَ ْ هٗ وَ ال ُ مْ وَ رَ سُ وْ ل ُ ك َ وْ ا فَ سَ يَرَ ى اّٰلله ُ عَ مَ ل ُ وَ قُ لِ اعْ مَ ل َۚ َوْ ن ُ نْتُمْ تَعْ مَ ل ُ مْ بِمَا ك ُ غَ يْبِ وَ الشَّ هَ ادَ ةِ فَ يُنَب ِئُك ْ عٰلِمِ ال ١٠٥ Artinya: Dan katakanlah, “Bekerjalah kamu maka Allah akan melihat pekerjaanmu, begitu juga Rasul-Nya dan orang-orang mukmin, dan kamu akan dikembalikan kepada (Allah) yang mengetahui yang gaib dan yang nyata, lalu diberitakan-Nya kepada kamu apa yang telah kamu kerjakan. Tanggung jawab terhadap sebuah pekerjaan adalah kesadaran akan kewajiban pegawai untuk melaksanakan pekerjaan terkait dengan tugas pokok dan fungsi yang diberikan kepada pegawainya. 3 Inisiatif Hifdz al-aql Pegawai memiliki kreatifitas yang berkaitan dengan daya fikir dalam bentuk ide untuk suatu tujuan organisasi. Setiap inisiatif sebaiknya mendapat perhatian atau tanggapan positif dari atasan. Bila atasan (X1) terhadap Hasil penelitian menunjukkan bahwa kompensasi berpengaruh signifikan terhadap kinerja (0.010 < 0.05) dan thitung lebih besar dari ttabel (2.634 > 1.660), maka kesimpulannya adalah Ho ditolak Ha diterima. Kompensasi merupakan imbalan dari perusahaan untuk diberikan kepada pegawai atas jasanya dalam melakukan tugas dan tanggung jawab. Tujuannya ialah untuk menciptakan kesadaran bersama dalam bekerja diantara pegawai agar dapat sama dengan perusahaan. Perusahaan juga berharap dengan adanya pemberian kompensasi, pegawai bisa melakukan dan menghasilkan pekerjaan yang lebih baik sehingga menciptakan kinerja yang baik juga. Kompensasi berupa gaji, insentif, bonus, tunjangan, pekerjaan dan lingkungan pekerjaan adalah faktor penting untuk mempengaruhi meningkatnya suatu kinerja pegawai. Semakin besar kompensasi yang diberikan kepada pegawai, semakin tinggi pula usaha para pegawai untuk meningkatkan kinerjanya. Begitupun sebaliknya, apabila kompensasi yang diberikan kepada pegawai semakin rendah bahkan dibawah rata- rata yang telah ditetapan dalam hukum, maka akan Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 3000 Analisa Hukum Islam mengajarkan kita untuk melakukan pekerjaan sesuai dengan ketentuan yang berlaku. Berlaku adillah engkau dalam setiap keadaan seperti yang terkandung dalam Alquran Surah An-Nahl ayat 90 yang berbunyi: لَََّٰ٠ ِقُ رْ بٰى وَ يَنْهٰ ى عَ ن ْ اِ حْ سَ انِ وَ اِ يْتَ اۤئِ ذِ ى ال ْ عَ دْ لِ وَ ال ْ مُ رُ بِال ْ ۞ اِ نَّ اّٰلله َ يَأ رِ وَ ا َ مُ نْك ْ فَ حْ شَ اۤءِ وَ ال ْ ال َرُ وْ ن َّ ك َ مْ تَذ ُ ك َّ عَ ل َ مْ ل ُ بَغْ يِ يَعِ ظُ ك ْ ل ٩٠ ِ٠ Artinya: Sesungguhnya Allah menyuruh (kamu) berlaku Adil dan berbuat kebajikan, memberikan bantuan kepada kerabat, dan Dia melarang (melakukan) perbuatan keji, kemungkaran, dan permusuhan. Dia memberi pengajaran kepadamu agar kamu dapat mengambil pelajaran. Untuk itu pegawai yang menerapkan kedisiplinan dalam bekerja akan mendapatkan pengaruh positif seperti menerima reward/ naik gaji, mampu mempertahankan pekerjaan agar tidak dipecat, naik pangkat apabila pegawai tersebut mampu untuk melakukan pekerjaan dengan dengan baik sesuai dengan aturan yang berlaku. ُ Karena dalam Islam diajarkan tentang bekerja penuh dengan tanggung jawab seperti yang terkandung dalam Alquran Surah At-Taubah Ayat 105 yang berbunyi: ُۗلَّٰۚ٠٥ ى ٰ َۗ وَ سَ تُرَ دُّ وْ نَ اِ ل مُ ؤْ مِ نُوْ نَ ْ هٗ وَ ال ُ مْ وَ رَ سُ وْ ل ُ ك َ وْ ا فَ سَ يَرَ ى اّٰلله ُ عَ مَ ل ُ وَ قُ لِ اعْ مَ ل َۚ َوْ ن ُ نْتُمْ تَعْ مَ ل ُ مْ بِمَا ك ُ غَ يْبِ وَ الشَّ هَ ادَ ةِ فَ يُنَب ِئُك ْ عٰلِمِ ال ١٠٥ Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Analisa Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 No Analisis Dengan Indikator Kinerja Maqashid Syariah Analisa selalu menjegal inisiatif pegawai maka organisasi akan kehilangan energy atau daya dorong untuk. Agama kita adalah agama berpikir, di dalam agama kita, kita sering dilatih untuk berfikir. Dalam Al-quran terdapat lebih dari 640 ayat yang mendorong manusia untuk berpikir. Oleh karena itu kita, diperintahkan oleh Syari’at untuk menggunakan akal pikiran kita. Allah telah mengistimewakan manusia dibandingkan dengan makhluk lainya dengan adanya akal dan kecerdasan yang tinggi. seperti yang terkandung dalam Alquran Surah Ali Imran Ayat 65 yang berbunyi: َكِ تٰبِ لِم ْ ال َ هْ ل َ يٰٓا ا َّ اِ ل ُ ج ِ يْل ْ اِ ن ْ تِ التَّوْ رٰ ىةُ وَ ال َ نْزِ ل ُ حَ اۤجُّ وْ نَ فِيْ ْٓ اِ بْرٰ هِ يْمَ وَ مَ آْ ا ُ ت َوْ ن ُ ا تَعْ قِ ل َ فَ ل َ مِ نْ ْۢ بَعْ دِ ه َۗ ا ٦٥ Artinya: wahai ahli kitab ! Mengapa kamu berbantah-bantahan tentang Ibrahim, padahal Taurat dan Injil diturunkan setelah dia (Ibrahim) Apakah kamu tidak mengerti? Berkenaan dengan kebiasaan berpikir tertib, agama dipandang oleh sementara orang mempunyai peranan terhadap rendahnya kreativitas manusia. Agama dipandang sangat menekankan ketaatan seseorang kepada norma-norma. Sehingga, karena kebiasaan berpikir dan bertindak berdasarkan norma-norma itulah semangat atau niatan untuk berkreasi menjadi terhambat. Pandangan ini dinilai oleh pendapat lain sebagai pandangan yang tidak mengenal esensi agama. Menurut pendapat terakhir ini, agama diciptakan Tuhan agar kehidupan manusia menjadi lebih baik. Islam misalnya, dilahirkan agar menjadi petunjuk bagi alam semesta (rahmatan lil ‘alamin). 4 Kualitas Kerja Hifdz al-aql Berkaitan dengan kemampuan pegawai untuk menunjukkan hasil kerja yang ditinjau dari segi kerapian kerja dan ketelitian kerja atau tingkat kesalahan dalam menyelesaikan pekerjaan.seperti yang terkandung dalam Alquran Surah Ash- Sharh Ayat 7 yang berbunyi: ْۙ ْتَ فَ انْصَ ب ْ فَ اِذَ ا فَ رَ غ ٧ Artinya : Maka apabila engkau telah selesai (dari sesuatu urusan), tetaplah bekerja keras (untuk urusan yang lain). Dia menyebutkan yang pertama, “Jika engkau telah selesai dari urusan akhiratmu maka fokuslah dan seriuslah untuk ibadah selanjutnya.” Dan banyak perkataan salaf akan hal ini, di antaranya: 1. Jika engkau telah selesai dari sholat maka seriuslah untuk berdoa 2. Jika engkau telah selesai dari tasyahhud maka berdoalah untuk dunia dan akhiratmu 3. Jika engkau telah selesai dari mendakwahkan risalah maka tegaklah untuk berjihad 4. Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 seperti yang terkandung dalam Alquran Surah Ali Imran Ayat 65 yang berbunyi: َكِ تٰبِ لِم ْ ال َ هْ ل َ يٰٓا ا َّ اِ ل ُ ج ِ يْل ْ اِ ن ْ تِ التَّوْ رٰ ىةُ وَ ال َ نْزِ ل ُ حَ اۤجُّ وْ نَ فِيْ ْٓ اِ بْرٰ هِ يْمَ وَ مَ آْ ا ُ ت َوْ ن ُ ا تَعْ قِ ل َ فَ ل َ مِ نْ ْۢ بَعْ دِ ه َۗ ا ٦٥ Artinya: wahai ahli kitab ! Mengapa kamu berbantah-bantahan tentang Ibrahim, padahal Taurat dan Injil diturunkan setelah dia (Ibrahim) Apakah kamu tidak mengerti? Berkenaan dengan kebiasaan berpikir tertib, agama dipandang oleh sementara orang mempunyai peranan terhadap rendahnya kreativitas manusia. Agama dipandang sangat menekankan ketaatan seseorang kepada norma-norma. Sehingga, karena kebiasaan berpikir dan bertindak berdasarkan norma-norma itulah semangat atau niatan untuk berkreasi menjadi terhambat. Pandangan ini dinilai oleh pendapat lain sebagai pandangan yang tidak mengenal esensi agama. Menurut pendapat terakhir ini, agama diciptakan Tuhan agar kehidupan manusia menjadi lebih baik. Islam misalnya, dilahirkan agar menjadi petunjuk bagi alam semesta (rahmatan lil ‘alamin). 4 Kualitas Kerja Hifdz al-aql Berkaitan dengan kemampuan pegawai untuk menunjukkan hasil kerja yang ditinjau dari segi kerapian kerja dan ketelitian kerja atau tingkat kesalahan dalam menyelesaikan pekerjaan.seperti yang terkandung dalam Alquran Surah Ash- Sharh Ayat 7 yang berbunyi: ْۙ ْتَ فَ انْصَ ب ْ فَ اِذَ ا فَ رَ غ ٧ Artinya : Maka apabila engkau telah selesai (dari sesuatu urusan), tetaplah bekerja keras (untuk urusan yang lain). Dia menyebutkan yang pertama, “Jika engkau telah selesai dari urusan akhiratmu maka fokuslah dan seriuslah untuk ibadah selanjutnya.” Dan banyak perkataan salaf akan hal ini, di antaranya: 1. Jika engkau telah selesai dari sholat maka seriuslah untuk berdoa 2. Jika engkau telah selesai dari tasyahhud maka berdoalah untuk dunia dan akhiratmu 3. Jika engkau telah selesai dari mendakwahkan risalah maka tegaklah untuk berjihad 4 Jika engkau telah selesai dari perkara perkara yang wajib maka Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 3001 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 3 No Instrument Analisis Dengan Indikator Kinerja Alasan Maqashid Syariah Anali selalu menjegal inisiatif pegawai m energy atau daya dorong untuk. Agama kita adalah agama berpikir, dilatih untuk berfikir. Dalam Al-quran mendorong manusia untuk berpikir. O oleh Syari’at untuk menggunakan mengistimewakan manusia dibandi dengan adanya akal dan kecerdasan y seperti yang terkandung dalam Alqur berbunyi: ا َّ اِ ل ُ ج ِ يْل ْ اِ ن ْ تِ التَّوْ رٰ ىةُ وَ ال َ نْزِ ل ُ ه يْمَ وَ مَ آْ ا Artinya: wahai ahli kitab ! Meng tentang Ibrahim, padahal Taurat d (Ibrahim) Apakah kamu tidak menger Berkenaan dengan kebiasaan berpik sementara orang mempunyai perana manusia. Agama dipandang sangat kepada norma-norma. Sehingga, k bertindak berdasarkan norma-norma i berkreasi menjadi terhambat. Pandan sebagai pandangan yang tidak me pendapat terakhir ini, agama diciptaka menjadi lebih baik. Islam misalnya, d bagi alam semesta (rahmatan lil ‘alam 4 Kualitas Kerja Hifdz al-aql Berkaitan dengan kemampuan pegaw yang ditinjau dari segi kerapian kerja kesalahan dalam menyelesaikan pe dalam Alquran Surah Ash- Sharh Ay Artinya : Maka apabila engkau tela tetaplah bekerja keras (untuk urusan Dia menyebutkan yang pertama, “Jik akhiratmu maka fokuslah dan seriusla banyak perkataan salaf akan hal ini, d 1. Jika engkau telah selesai dari sholat m 2. Jika engkau telah selesai dari tasyah dan akhiratmu 3. Jika engkau telah selesai dari menda untuk berjihad 4 Jika engkau telah selesai dari per , ( ), , No Instrument Analisis Dengan Indikator Kinerja Alasan Maqashid Syariah Analisa selalu menjegal inisiatif pegawai maka organisasi akan kehilangan energy atau daya dorong untuk. Agama kita adalah agama berpikir, di dalam agama kita, kita sering dilatih untuk berfikir. Dalam Al-quran terdapat lebih dari 640 ayat yang mendorong manusia untuk berpikir. Oleh karena itu kita, diperintahkan oleh Syari’at untuk menggunakan akal pikiran kita. Allah telah mengistimewakan manusia dibandingkan dengan makhluk lainya dengan adanya akal dan kecerdasan yang tinggi. Analisa Jika engkau telah selesai dari perkara-perkara yang wajib maka tegaklah untuk melaksanakan perkara-perkara yang sunnah 5 Kuantitas Kerja Hifdz al-aql Berkaitan dengan kemampuan pegawai dalam menyelesaikan jumlah atau hasil pekerjaan yang dapat diselesaikan dalam suatu periode Agama kita adalah agama berpikir, di dalam agama kita, kita sering dilatih untuk berfikir. Dalam Al-quran terdapat lebih dari 640 ayat yang mendorong manusia untuk berpikir. Oleh karena itu kita, diperintahkan oleh Syari’at untuk menggunakan akal pikiran kita. Allah telah mengistimewakan manusia dibandingkan dengan makhluk lainya dengan adanya akal dan kecerdasan yang tinggi. ََُٓٓٓ seperti yang terkandung dalam Alquran Surah Ali Imran Ayat 65 yang berbunyi: ََُٓٓٓۗۢ٥ ۗۢ٥ Artinya: wahai ahli kitab ! Mengapa kamu berbantah-bantahan tentang Ibrahim, padahal Taurat dan Injil diturunkan setelah dia (Ibrahim) Apakah kamu tidak mengerti? Berkenaan dengan kebiasaan berpikir tertib, agama dipandang oleh sementara orang mempunyai peranan terhadap rendahnya kreativitas manusia. Agama dipandang sangat menekankan ketaatan seseorang kepada norma-norma. Sehingga, karena kebiasaan berpikir dan bertindak berdasarkan norma-norma itulah semangat atau niatan untuk berkreasi menjadi terhambat. Pandangan ini dinilai oleh pendapat lain sebagai pandangan yang tidak mengenal esensi agama. Menurut pendapat terakhir ini, agama diciptakan Tuhan agar kehidupan manusia menjadi lebih baik. Islam misalnya, dilahirkan agar menjadi petunjuk bagi alam semesta (rahmatan lil ‘alamin). ْۙ ْتَ فَ انْصَ ب ْ فَ اِذَ ا فَ رَ غ ٧ فَ اِذَ ا ف ۙ Artinya : Maka apabila engkau telah selesai (dari sesuatu urusan), tetaplah bekerja keras (untuk urusan yang lain). Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 3002 Jurnal Ilmiah Ekonomi Islam, 8(03), 2022, 3002 No Instrument Analisis Dengan Indikator Kinerja Alasan Maqashid Syariah Analisa Hifdz al- nafs tertentu.seperti yang terkandung dalam Alquran Surah An- Nahl 97 yang berbunyi: َۚ ًِبَة نُحْ يِيَنَّهٗ حَ يٰوةً طَ ي َ نْثٰى وَ هُ وَ مُ ؤْ مِ نٌ فَ ل ُ وْ ا َ رٍ ا َ صَ الِ حًا م ِ نْ ذَك َ مَ نْ عَ مِ ل َوْ ن ُ انُوْا يَعْ مَ ل َ حْ سَ نِ مَ ا ك َ جْ رَ هُ مْ بِا َ نَجْ زِ يَنَّهُ مْ ا َ وَ ل ٩٧ Artinya: barang siapa mengerjakan kebajikan, baik laki-laki maupun perempuan dalam keadaan beriman, maka pasti akan kami berikan kepadanya kehidupan yang baik dan akan kami beri balasan dengan pahala yang lebih baik dari apa yang telah mereka kerjakan. 4. KESIMPULAN 4. KESIMPULAN George, J.M. & Jones, G.R. 2(005)Understanding and managingorganizational behavior (4th ed.). (New Jersey: Upper Saddle Rive. Berdasarkan hasil dari pengujian dan analisis. Peneliti menemukan bahwa secara parsial lingkungan sosial tidak berpengaruh langsung terhadap kompensasi, motivasi, dan kepuasan kerja berpengaruh secara langsung terhadap kinerja. Selanjutnya kompensasi tidak berpengaruh langsung terhadap kinerja sedangkan untuk motivasi, dan kepuasan kerja berpengaruh langsung terhadap kinerja. Maqashid al-syari’ah dapat diartikan sebagai tujuan Allah sebagai shari’ dalam menetapkan hukum yang terintegrasi terhadap hambanya. Inti dari maqashid al-syari’ah adalah untuk mewujudkan kebaikan sekaligus menghindarkan keburukan atau menarik manfaat (maslahah), dalam hal ini terciptanya kebaikan diantara pegawai di RSUD Pringadi Medan. Mingka, A. (2013). Maqashid Syariah Dalam Ekonomi dan Keuangan Syariah. Jakarta: Iqtishad Publishing. Mudayana, A. A. (2020). Pengaruh motivasi dan beban kerja terhadap kinerja karyawan di Rumah Sakit Nur Hidayah Bantul. Kes Mas: Jurnal Fakultas Kesehatan Masyarakat Universitas Ahmad Daulan, 4(2), 24851. Mulawarman, A. D., Kamayanti, A., Manzilati, A., Djalaluddin, A., Sonhaji, S., Tumirin, T., ... & Nurindrasari, D. (2018). Akuntansi syariah untuk rumah sakit teori, prinsip, dan praktik Nasution, M. S. A., & Nasution, R. H. (2020). Filsafat hukum & maqashid syariah. Prenada Media. Rahmayanti, (2014) Pengaruh motivasi kerja terhadap kinerja karyawan pada CV. Putra Kaltim Samarinda.Journal Ilmu Administrasi Bisnis Vol.2 No. (2): 215-229. 2014. Analisa tertentu.seperti yang terkandung dalam Alquran Surah An- Nahl 97 yang berbunyi: ََۚ٧ ًِبَة نُحْ يِيَنَّهٗ حَ يٰوةً طَ ي َ نْثٰى وَ هُ وَ مُ ؤْ مِ نٌ فَ ل ُ وْ ا َ رٍ ا َ صَ الِ حًا م ِ نْ ذَك َ مَ نْ عَ مِ ل َوْ ن ُ انُوْا يَعْ مَ ل َ حْ سَ نِ مَ ا ك َ جْ رَ هُ مْ بِا َ نَجْ زِ يَنَّهُ مْ ا َ وَ ل ٩٧ 5. UCAPAN TERIMA KASIH Penelitian ini dapat dilaksanakan dengan baik berkat abntuan dari berbagai pihak, untuk itu peneliti mengucapkan terima kasih kepada Dosen Pembimbing, Kepala Program Studi, Pihak yang telah memberikan kerjasama yang baik dalam penelitian ini. Rahmayanti,, A., & Tamini, I. (2015). Pengaruh Kompensasi Terhadap Kepuasan Kerja Karyawan Gayamakmur Mobil Medan. Jurnal Bis-A: Jurnal Bisnis Administrasi, 4(2), 59-68. Sugiharjo, R. J., & Aldata, F. (2018). Pengaruh Beban Kerja Dan Motivasi Kerja Terhadap Kinerja Karyawan Bpjs Ketenagakerjaan Cabang Salemba. Jurnal Ilmiah Manajemen Bisnis, 4(1), 128-137. Analisa Dengan itu di dalam dunia kerja seorang pegawai harus bekerja dengan baik dan ikhlas, supaya mendapatkan balasan yang baik pula sesuai dengan kinerja yang telah mereka lakukan. 6. REFERENSI Bawono, D. C., & Nugraheni, R. (2015). Analisis Pengaruh Pemberian Insentif, Kepemimpian dan Beban Kerja Terhadap Kinerja Perawat (Studi pada Perawat Ruang RSUD Kota Semarang) (Doctoral dissertation, Fakultas Ekonomika dan Bisnis). Jurnal Ilmiah Ekonomi Islam, ISSN: 2477-6157; E-ISSN 2579-6534
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Molecular and Cellular Mechanisms of the Age-Dependency of Opioid Analgesia and Tolerance
Molecular pain
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cc-by
12,075
* Correspondence: pumchhyg@yahoo.com.cn 4Department of Anesthesia, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, No.1 Shuaifuyuan Str., Wangfujing Ave., Dongcheng District, Beijing 100730, China Full list of author information is available at the end of the article Molecular and cellular mechanisms of the age-dependency of opioid analgesia and tolerance Jing Zhao1, Xin Xin1, Guo-xi Xie2, Pamela Pierce Palmer3 and Yu-guang Huang1,4* © 2012 Zhao et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract The age-dependency of opioid analgesia and tolerance has been noticed in both clinical observation and laboratory studies. Evidence shows that many molecular and cellular events that play essential roles in opioid analgesia and tolerance are actually age-dependent. For example, the expression and functions of endogenous opioid peptides, multiple types of opioid receptors, G protein subunits that couple to opioid receptors, and regulators of G protein signaling (RGS proteins) change with development and age. Other signaling systems that are critical to opioid tolerance development, such as N-methyl-D-aspartic acid (NMDA) receptors, also undergo age-related changes. It is plausible that the age-dependent expression and functions of molecules within and related to the opioid signaling pathways, as well as age-dependent cellular activity such as agonist-induced opioid receptor internalization and desensitization, eventually lead to significant age-dependent changes in opioid analgesia and tolerance development. Keywords: Molecular and cellular mechanisms, Age-dependency, Opioid tolerance Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 MOLECULAR PAIN Open Access Background systemic. In addition, several physiological factors, such as age, sex, and genetic variations, can directly or indir- ectly affect the analgesic effectiveness and tolerance de- velopment of opioid drugs. Opioid drugs, such as morphine, are commonly used analgesics that are effective for treating most acute and chronic pain conditions. However, prolonged and repeti- tive opioid treatment can have side effects and result in a significant reduction or even complete loss of the anal- gesic effect (i.e. tolerance). Thus, although opioid anal- gesia remains a powerful means of pain therapy, opioid tolerance has become a major clinical problem for many patients who receive daily opioids for pain conditions. Tolerance is also a long-standing problem in the basic pharmacology of opioids. Opioid drug research and de- velopment has yet to produce potent and type-selective opioid agents that do not cause tolerance because we still have a poor understanding of the mechanisms by which opioid analgesia occurs and opioid tolerance develops. Recently, age-specific opioid therapy for pain, as well as the relationship between opioid tolerance and aging, has drawn considerable attention and renewed interest. It is well known that age-related processes (including early development and aging) play essential roles in the expression and function of many genes and in the devel- opment and function of many cells, tissues, and whole organisms. Studies also suggest that age is a determinant of opioid analgesia and tolerance in human beings, ani- mals, and individual cells. The bases of such age-depend- ency are as complicated and poorly understood as the mechanisms of opioid analgesia and tolerance them- selves, and they involve multiple levels. The mechanisms of opioid analgesia and tolerance are complicated, involving numerous molecules and cells, as well as many reactions and processes. These mechanisms act in concert across multiple levels: molecular, cellular, neuronal interaction and network, hormonal, and This review discusses recent evidence supporting the concept that opioid analgesia and tolerance are age- dependent. It also explores the molecular and cellular mechanisms that underlie this phenomenon. Age-dependent opioid analgesia and tolerance in laboratory animals R f h b l d Rats of varying ages have been evaluated in single-dose studies to determine the effects of age on opioid pharma- cokinetics and analgesic efficacy [10]. There also have been studies of opioid tolerance in prenatal and early postnatal animals [11-13]. Both types of studies have suggested that opioid tolerance is age-dependent, yet no study has systematically evaluated the rate of opioid tol- erance development across an animal’s lifespan, from early adolescence to advanced maturity. An early study suggested that morphine tolerance after repeated daily administration occurred more rapidly in young rats; however, the oldest rats used in that study were 12 weeks old [14]. In a study of daily morphine administration in rats ranging in age from 3 weeks to 1 year, the time to onset of tolerance increased dramatically as the rats aged. This effect could not be explained by age-related changes in the pharmacokinetics of morphine, suggesting that cellular and molecular mechanisms of opioid recep- tor signal transduction may be involved [15]. Opioid escalation can occur for a variety of reasons, in- cluding underlying disease progression, addiction, and pharmacologic tolerance. There are diagnostic tools to identify disease progression, and there are guidelines to identify and manage pain patients who might be drug- seeking or have a history of substance abuse [7]. How- ever, there are not yet any guidelines to identify patients who may be poor candidates for long-term opioid treat- ment because they are prone to rapid opioid tolerance development that would make long-term pain relief un- sustainable. Furthermore, there are currently no drugs available to delay opioid tolerance. Therefore, the prob- lem is two-fold. We need to identify important clinical parameters that affect opioid tolerance development and, in turn, find ways to use this information to pinpoint ef- fective therapeutic targets for future drug development. Age could be an important member of this set of parameters. Conflicting evidence exists concerning whether toler- ance develops to opiate-induced antinociception during the first 2 postnatal weeks. Tolerance to the antinocicep- tive effects of morphine does develop in rats within 15 days after birth, but it is masked by the rapid prolif- eration of opiate receptors, which simultaneously en- hance the antinociceptive potency of morphine [16]. Age-dependent opioid analgesia and tolerance in patients with pain A study by Moulin et al [9] showed that a group of 46 patients with chronic nonneuropathic pain and an aver- age age of 40 years had to take up to 60 mg oral mor- phine twice a day to get sustainable pain relief. These doses were much higher than those used in patients aged 60 years and older. For many years, studies have shown that age significantly influences the dosing and analgesic effects of commonly used opioid drugs [1,2]. In recent years, there has been a significant increase in the use of daily opioids to treat chronic nonmalignant pain [3]. There continues to be some debate as to whether daily opioid use results in sustainable pain relief for chronic nonmalignant pain conditions [4]. Clinical studies of long-term opioid ad- ministration show that although it can produce pro- longed pain relief in many patients, some patients with nonmalignant pain require escalating doses of opioids over time to maintain opioid efficacy [5,6], suggesting that opioid tolerance development is indeed a clinical problem. Age-dependent opioid analgesia and tolerance Results from many clinical observations and laboratory studies strongly support the notion that age is an Page 2 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 important factor affecting opioid analgesia. Recent clin- ical and laboratory data indicate that age also affects the development rate of opioid tolerance. patients less than 50 years old and patients older than 60 years. Significant differences were found; older patients, regardless of gender or type of pain, escalated their opioid use significantly less than younger patients over the 2-year treatment period. Age-dependent opioid effects in cells d d d ff h l p g y Pharmacological, biochemical, and molecular cloning studies have revealed that there are four different types of opioid receptors: the δ, μ, κ, and opioid receptor-like 1 (ORL1) receptors. They all belong to the G protein– coupled, seven-transmembrane receptor superfamily (GPCR) and share significant sequence homology (more than 60% identical at the amino-acid level) [28]. The δ, μ, and κ types are considered the classical opioid recep- tors because they are the selective binding sites for com- monly-used opioid drugs and mediate typical opioid effects that can be reversed by the specific “pure” opioid antagonist naloxone. In contrast, the ORL1 receptor mediates atypical dual (opioid and anti-opioid) effects that cannot be reversed by naloxone. Thus, the ORL1 re- ceptor can be seen as a divergent and atypical member of the opioid receptor family. The selectivity of the four types of opioid receptors for different endogenous opioid peptides and exogenous opioid drugs is summarized in Table 2. Age-dependent opioid effects have also been observed in cultured neuronal cells. A recent study showed that dorsal root ganglion (DRG) neurons cultured from 10-month-old rats were more sensitive to long-term morphine treatment than neurons from 3-month-old rats; in the neurons from the older rats, lower doses of morphine (10 times lower) and a shorter treatment period (33% shorter) were suffi- cient to induce significant increases in the immunoreactiv- ity of calcitonin gene-related peptide and substance P [24]. Although the relationship between this age-dependent sensitivity to chronic morphine in cultured DRG neurons and the rate of morphine tolerance development in whole animals is unknown, the impact of aging on the effects of opioids is apparent and significant. Age-dependent opioid analgesia and tolerance in laboratory animals R f h b l d These results indicate that con- tinuous administration of fentanyl via an osmotic mini- pump can render normal neonatal rats tolerant to and physically dependent on fentanyl within 72 hours [22]. Opioid receptor signal transduction pathways Decades of opioid research have led to the magnificent discovery of endogenous opioid peptides and multiple opioid receptors, which play the primary and essential roles in opioid action. In humans and other mammals, there exist at least four families of endogenous opioid peptides. The members of each family are formed from one of four large precursor proteins: prepro-opiomelano- cortin, prepro-enkephalin, preprodynorphin, and prepro- nociceptin. Through processes of cleavage by specific peptidases and post-translational modification, a dozen active opioid peptides are derived from the precursors (Table 1). These endogenous opioid peptides play import- ant roles in mediating and modulating the analgesic effect of and tolerance to opioids administered exogenously. Recently, Zissen et al [23] examined the development of opioid tolerance by intermittent injection or continu- ous infusion of morphine in postnatal 5- to 8- and 19- to 21-day-old rats and found that different dosages and de- livery schedules affected morphine tolerance in an age- dependent manner. These findings suggest that the dose and frequency of opioid administration interact with age in determining the development of tolerance. Age-dependent opioid analgesia and tolerance in laboratory animals R f h b l d The dose–response curve for morphine-induced antinocicep- tion in 9-day-old rat pups pretreated with morphine (20 mg/kg) over 4 days is shifted to the right, showing that repeated morphine administration can produce tol- erance within the first 2 weeks after birth. It is widely observed in pain management that younger patients seem to develop opioid tolerance more rapidly than older patients. Although there have been numerous studies of the effects of age on the pharmacokinetics of opioids, potential age-related changes in clinical pharma- codynamic tolerance to long-term opioids has never been studied. Rather, the majority of clinical studies have examined patients aged 18–80 years as a single group, with the mean age usually in the 50- to 60-year range. Likewise, it has been shown that 2-week-old rats de- velop tolerance to continuous subcutaneous morphine infusion within 72 hours [17]. Other studies have shown that opioid tolerance develops within 8–10 days in young adult rats [18,19]. However, there is some debate as to how early a neonatal rat can develop opioid tolerance (e.g. 9 versus 15 days after birth) [16,20]. To determine whether opioid dose escalation and long-term pain relief with extended opioid treatment dif- fers significantly among patients in different age groups, a recent retrospective study examined patients treated for an extended period with long-acting opioids for non- malignant pain [8]. Opioid dose escalation and visual analog scale (VAS) scores were compared between Results from a study by Laferrière et al [21] indicated that postnatal development did not affect the potency of Page 3 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 underlying opioid analgesia and tolerance (Figure 2). Some of these effects are described below. fentanyl in 6- to 9-day-old rats. The fentanyl pump– implanted animals were observed to develop tolerance to fentanyl, and this tolerance was not affected by gender, developmental changes, fentanyl distribution, or changes in fentanyl metabolism. These results indicate that con- tinuous administration of fentanyl via an osmotic mini- pump can render normal neonatal rats tolerant to and physically dependent on fentanyl within 72 hours [22]. fentanyl in 6- to 9-day-old rats. The fentanyl pump– implanted animals were observed to develop tolerance to fentanyl, and this tolerance was not affected by gender, developmental changes, fentanyl distribution, or changes in fentanyl metabolism. Molecular and cellular mechanisms of the age- dependency of opioid analgesia and tolerance Mechanisms of opioid tolerance at the molecular and cellular levels are complex. Many of them require a modification of the expression and functions of signaling molecules [25-27]. To explore the molecular and cellular bases of the age-dependency of opioid analgesia and tol- erance, we must first have a comprehensive understand- ing of opioid receptor signaling systems (Figure 1), as well as up-to-date knowledge of the mechanisms of opi- oid tolerance at the molecular and cellular levels. Opioid receptors of all four types are coupled to the inhibitory G protein Gi or Go, which is in turn regulated by RGS proteins. The analgesic effect of opioid agonists is attributed to signal transduction through the G pro- tein-mediated second messenger system initiated by the binding of agonist to opioid receptor. Once an opioid agonist binds to its specific receptor, the conformation of the opioid receptor changes, and the coupled Gi/o pro- tein is subsequently activated. The Gα subunit switches from a GDP-bound inactive state to a GTP-bound active state and dissociates from the Gßγ subunits. Activated G subunits then interact with downstream effectors, which further amplify the signal initiated by the opioid agonist and opioid receptor. Those downstream actions include the inhibition of adenylyl cyclase (AC) to reduce the pro- duction of cyclic AMP (cAMP), the opening of potassium channels, the inhibition of calcium channels, and the Having this knowledge enables us to address two im- portant questions. First, what role does age play in the mechanisms of opioid analgesia and tolerance? Second, how do the development, growth, and aging processes affect the molecular and cellular events described in the previous section? In response to the first question, evidence shows that de- velopment and aging have a significant impact on almost every aspect of the molecular and cellular mechanisms Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Page 4 of 12 Page 4 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Figure 1 Opioid receptor signaling pathway. All four types of opioid receptor are coupled to the inhibitory G protein Gi or Go, which in turn is regulated by RGS proteins. The analgesic effect of opioid agonists is attributed to the signal transduction through the G protein–mediated second messenger system initiated by the binding of an agonist to an opioid receptor. Molecular and cellular mechanisms of the age- dependency of opioid analgesia and tolerance Once an opioid agonist binds to its specific receptor, the conformation of the opioid receptor changes, and the coupled Gi/o protein is subsequently activated. The Gα subunit switches from a GDP-bound inactive state to a GTP-bound active state and dissociates from the Gßγ subunits. Activated G subunits then interact with downstream effectors, which further amplify the signal initiated by the opioid agonist and opioid receptor. Those downstream actions include the inhibition of adenylyl cyclase (AC) to reduce the production of cyclic AMP (cAMP), the opening of potassium channels, the inhibition of calcium channels, and the activation of mitogen-activated protein kinase (MAPK) and other kinases. Figure 1 Opioid receptor signaling pathway. All four types of opioid receptor are coupled to the inhibitory G protein Gi or Go, which in turn is regulated by RGS proteins. The analgesic effect of opioid agonists is attributed to the signal transduction through the G protein–mediated second messenger system initiated by the binding of an agonist to an opioid receptor. Once an opioid agonist binds to its specific receptor, the conformation of the opioid receptor changes, and the coupled Gi/o protein is subsequently activated. The Gα subunit switches from a GDP-bound inactive state to a GTP-bound active state and dissociates from the Gßγ subunits. Activated G subunits then interact with downstream effectors, which further amplify the signal initiated by the opioid agonist and opioid receptor. Those downstream actions include the inhibition of adenylyl cyclase (AC) to reduce the production of cyclic AMP (cAMP), the opening of potassium channels, the inhibition of calcium channels, and the activation of mitogen-activated protein kinase (MAPK) and other kinases. Figure 1 Opioid receptor signaling pathway. All four types of opioid receptor are coupled to the inhibitory G protein Gi or Go, which in turn is regulated by RGS proteins. The analgesic effect of opioid agonists is attributed to the signal transduction through the G protein–mediated second messenger system initiated by the binding of an agonist to an opioid receptor. Once an opioid agonist binds to its specific receptor, the conformation of the opioid receptor changes, and the coupled Gi/o protein is subsequently activated. The Gα subunit switches from a GDP-bound inactive state to a GTP-bound active state and dissociates from the Gßγ subunits. Activated G subunits then interact with downstream effectors, which further amplify the signal initiated by the opioid agonist and opioid receptor. Molecular and cellular mechanisms of the age- dependency of opioid analgesia and tolerance Those downstream actions include the inhibition of adenylyl cyclase (AC) to reduce the production of cyclic AMP (cAMP), the opening of potassium channels, the inhibition of calcium channels, and the activation of mitogen-activated protein kinase (MAPK) and other kinases. Figure 1 Opioid receptor signaling pathway. All four typ Age-dependent expression and function of endogenous opioid peptides and multiple opioid receptors Page 5 of 12 Page 5 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/ Zhao et al. Molecular Pain 2012, 10:38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 http://www.molecularpain.com/content/10/1/38 Figure 2 Molecular and cellular mechanisms of the age-dependency of opioid analgesia and tolerance. Mechanisms of opioid analgesia and tolerance at the molecular and cellular levels are complex, and many of them require a modification of the expression and functions of signaling molecules. Aging has a significant impact on almost every aspect of the opioid receptor signaling systems that underlie opioid analgesia and tolerance. ①Endogenous opioid peptides and opioid receptors are differentially expressed in different developmental stages, and aging is associated with changes in the number and/or affinity of opioid receptors and opioid receptor-like 1 (ORL1). ②The expression of β-arrestin, which plays a prominent part in opioid receptor desensitization, is determined by neural differentiation and aging. The increased expression of β- arrestin is accompanied by a parallel increase in G protein-coupled receptor kinase (GRK) expression during prenatal development. ③The phosphorylation of opioid receptors by GRK and the binding of β-arrestin initiate the internalization of the ligand-bound receptors. The internalization of epidermal growth factor (EGF) receptors and interleukin 2 (IL2) receptors and clathrin-associated endocytosis are age-dependent, which implies that the same might be also true for opioid receptor systems. ④Aging affects the expression and function of the N-methyl-D- aspartic acid (NMDA) receptor and its subunits—calmodulin (CaM) and protein kinase C (PKC) and its various isoforms—as well as other neuropeptides known to have anti-opioid effects. ⑤The expression, regulation, and function of specific G protein signaling (RGS) members are affected by age during embryonic development and neuronal differentiation. ⑥Development and aging differentially regulate G protein- mediated adenylate cyclase (AC) signaling. The activities of AC, guanylate cyclase (GC), cyclic AMP (cAMP), phosphodiesterase, and cyclic GMP (cGMP) phosphodiesterase in the frontal cortex and cerebellum show age-related changes. Figure 2 Molecular and cellular mechanisms of the age-dependency of opioid analgesia and tolerance. Mechanisms of opioid analgesia and tolerance at the molecular and cellular levels are complex, and many of them require a modification of the expression and functions of signaling molecules. Aging has a significant impact on almost every aspect of the opioid receptor signaling systems that underlie opioid analgesia and tolerance. Age-dependent expression and function of endogenous opioid peptides and multiple opioid receptors ①Endogenous opioid peptides and opioid receptors are differentially expressed in different developmental stages, and aging is associated with changes in the number and/or affinity of opioid receptors and opioid receptor-like 1 (ORL1). ②The expression of β-arrestin, which plays a prominent part in opioid receptor desensitization, is determined by neural differentiation and aging. The increased expression of β- arrestin is accompanied by a parallel increase in G protein-coupled receptor kinase (GRK) expression during prenatal development. ③The phosphorylation of opioid receptors by GRK and the binding of β-arrestin initiate the internalization of the ligand-bound receptors. The internalization of epidermal growth factor (EGF) receptors and interleukin 2 (IL2) receptors and clathrin-associated endocytosis are age-dependent, which implies that the same might be also true for opioid receptor systems. ④Aging affects the expression and function of the N-methyl-D- aspartic acid (NMDA) receptor and its subunits—calmodulin (CaM) and protein kinase C (PKC) and its various isoforms—as well as other neuropeptides known to have anti-opioid effects. ⑤The expression, regulation, and function of specific G protein signaling (RGS) members are affected by age during embryonic development and neuronal differentiation. ⑥Development and aging differentially regulate G protein- mediated adenylate cyclase (AC) signaling. The activities of AC, guanylate cyclase (GC), cyclic AMP (cAMP), phosphodiesterase, and cyclic GMP (cGMP) phosphodiesterase in the frontal cortex and cerebellum show age-related changes. A large body of evidence has shown that development and age have a significant impact on the expression and functional activities of opioid receptors and ORL1. Table 3 summarizes the major findings. over the first few postnatal weeks of life. Another group found that aging is associated with an increased affinity (decreased dissociation constant Kd) of the μ opioid recep- tors without a significant effect on the number of μ recep- tors [38]. However, controversy exists, as the study from Bardo et al [39] shows that an alteration in the opiate system during development does not necessarily produce a con- comitant alteration in the behavioral efficacy of mor- phine. This conclusion was drawn from the finding that the long-term administration of morphine did not alter the ligand binding of opioid receptors in certain areas of the brain in rats 1 to 21 days of age. Age-dependent expression and function of endogenous opioid peptides and multiple opioid receptors activation of mitogen-activated protein kinase (MAPK) and other kinases. Age-dependent expression and function of endogenous opioid peptides and multiple opioid receptors opioid peptides and multiple opioid receptors It has been well documented that the expression and dis- tribution of the endogenous opioid peptides—prepro- enkephalin, prepro-endorphin, preprodynorphin, and pre- pronociceptin—are age-related [32,33]. It has also been shown that opioid receptors and ORL1 are differentially expressed in different developmental stages and ages [34,35]. During the postnatal preweaning period, there is a progressive increase in the number of μ receptors in the whole brain, and this increase is correlated with an in- crease in the antinociceptive efficacy of morphine (14/4). Studies by Rahman et al [36]. showed that the numbers of μ, δ, and κ opioid receptor binding sites in the spinal cord increase from 0 postnatal days, reach a peak at 7 postnatal days, and then progressively decrease, reaching adult levels at 56 postnatal days. Zhang and Pasternak [37] reported that high-affinity κ opioid receptor binding sites in the spinal cord increase three-fold from 2 postnatal days to 14 postnatal days; the majority of this increase occurs on or around 5 postnatal days. These findings indicate that there are parallel changes in the numbers and/or affinity of opi- oid receptors and the strength of opioid-induced analgesia The agonist-bound opioid receptor goes through intern- alization for signaling and recycling itself. Opioid receptor internalization is assisted by RGS proteins [29]. The ter- mination of opioid signaling results from the hydrolysis of GTP by a GTPase; this process is accelerated by specific RGS proteins, which return the Gα subunit to its GDP- bound inactive form. The processes of internalization, re- cycling, and inactivation resets opioid receptors and G proteins, readying them to transduce the next signal when another opioid agonist binds to the receptor. Evidence shows that all four types of opioid receptor are involved in opioid analgesia and tolerance. Each of the four types of opioid agonist produces analgesia (or hyperalgesia in the case of nociceptin) and tolerance by binding to its re- spective receptor. In addition, the multiple types of opioid receptors interact with each other to enhance or attenuate opioid analgesia and tolerance. For example, studies have shown that morphine analgesia is greatly enhanced by acti- vation of δ or κ opioid receptors [30] and that the ORL1 agonist nociceptin/orphanin FQ attenuates morphine anal- gesia and accelerates morphine tolerance [31]. Effect of age on opioid receptor phosphorylation and desensitization in the development of opioid tolerance of opioid tolerance [40]. Continued exposure to an agon- ist leads to the phosphorylation of opioid receptors by G protein–coupled receptor kinases (GRKs). The phos- phorylated receptor is then bound by β-arrestin, a mem- ber of the arrestin family that can recognize both GRK phosphorylation sites on the receptor and the activated conformation of the receptor. The phosphorylation of the opioid receptor and the binding of β-arrestin result in the uncoupling of the opioid receptor from G proteins, which leads to a desensitization of the opioid receptor and a reduction of opioid agonist’s efficacy [41]. Among the members of the arrestin family, β-arrestin 1 (i.e. arrestin 2) and β-arrestin 2 (i.e. arrestin 3) contribute to the regulation of the majority of GPCRs. Long-term morphine treatment of cells that express μ-opioid receptor (MOR) leads to the attenuation of β-arrestin 1 and β- arrestin 2, which subsequently desensitize the activated The expression of arrestin 2, which plays a prominent part in opioid receptor desensitization, is determined by neural differentiation and aging. A study performed in rat embryos detected a steady increase in arrestin 2 expression during prenatal development. At early stages of prenatal development, the concentrations of the two arrestin iso- forms are similar. The increase in arrestin 2 is accompan- ied by a parallel increase in GRK5 expression, whereas the expression of other GRK subtypes changes very little [45]. Among the members of the arrestin family, β-arrestin 1 (i.e. arrestin 2) and β-arrestin 2 (i.e. arrestin 3) contribute to the regulation of the majority of GPCRs. Long-term morphine treatment of cells that express μ-opioid receptor (MOR) leads to the attenuation of β-arrestin 1 and β- arrestin 2, which subsequently desensitize the activated Effect of age on opioid receptor phosphorylation and desensitization in the development of opioid tolerance The binding of an agonist to an opioid receptor induces two events: the activation of the opioid signal transduc- tion pathway and the modulation (including but not lim- ited to phosphorylation and desensitization) of the opioid receptor itself. Opioid receptor phosphorylation and desensitization have been linked to the development Page 6 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Table 1 Endogenous opioid peptides and their precursors Opioid Peptide Precursor β-Endorphin Pro-opiomelanocortin Met-enkephalin Pro-enkephalin Leu-enkephalin Pro-enkephalin Octapeptide Pro-enkephalin Heptapeptide Pro-enkephalin Dynorphin 1-8 Pro-dynorphin Dynorphin 1-17 Pro-dynorphin α-Neoendorphin Pro-dynorphin β-Neoendorphin Pro-dynorphin Nociceptin Prepro-nociceptin Bocistatin Prepro-nociceptin Table 1 Endogenous opioid peptides and their precursors Opioid Peptide Precursor receptors and facilitate the internalization of inactivated receptors and the recycling of resensitized receptors back to the cell surface [42]. Our understanding of these effects, along with some other research findings, strongly suggest that GRK and arrestin play essential roles in the processes underlying MOR desensitization, which may contribute to the development of opioid tolerance. The immunodensities of GRK2, GRK6, and β-arrestin 2 in the prefrontal cortex were found to be significantly lower in opiate addicts than in controls [43]. This finding indicates that opioid tolerance is associated with a down- regulation of brain MOR and a regulation of GRK 2/6 and β-arrestin 2. It is generally believed that the efficiency of GPCR sig- naling correlates with the concentration of receptors, G- proteins, and effectors, whereas the rate of receptor desensitization correlates with the concentration of rele- vant GRKs and arrestins. GRK2 and GRK6 play import- ant roles in the phosphorylation of G proteins and in the regulation of opioid receptors. In human prefrontal cor- tex, the immunodensities of GRK2/6 and β-arrestin 2 ap- pear to decline significantly with aging (i.e. between the ages of 16–87 y) [44]. of opioid tolerance [40]. Continued exposure to an agon- ist leads to the phosphorylation of opioid receptors by G protein–coupled receptor kinases (GRKs). The phos- phorylated receptor is then bound by β-arrestin, a mem- ber of the arrestin family that can recognize both GRK phosphorylation sites on the receptor and the activated conformation of the receptor. The phosphorylation of the opioid receptor and the binding of β-arrestin result in the uncoupling of the opioid receptor from G proteins, which leads to a desensitization of the opioid receptor and a reduction of opioid agonist’s efficacy [41]. Effects of age on opioid receptor internalization in opioid tolerance Table 2 Selectivity of Opioid receptors to the Endogenous Opioid Peptides and Exogenous Opioid Drugs Opioid receptor Endogenous opioid peptides Opioid drugs Μ-receptor β-endorphin morphine enkephalin fentanyl sufentanil D-Ala2,MePhe4,Gly-ol5 (DAMGO) δ-receptor Met-enkephalin deltorphin Leu-enkephalin [D-Pen2,D-Pen5] enkephalin (DPDPE) κ-receptor dynorphin A ethylketocyclazocine (EKC) dynorphin B buprenorphine pentazocine U 50,488 ORL1-receptor nociceptin None Table 2 Selectivity of Opioid receptors to the Endogenous Opioid Peptides and Exogenous Opioid Drugs It is believed that the number of functional opioid receptors on the cell membrane surface determines the magnitude of an opioid’s effects, including analgesia. An orthodox hypoth- esis is that binding with an agonist induces opioid receptor internalization and downregulation, which reduce the num- ber of available opioid receptors on the cell surface and, therefore, reduce the effect of the opioid agonist and facili- tate the development of tolerance. This notion has been supported by plentiful data on opioid tolerance [46-48]. However, some recent studies have offered a revised conception of the relationship between opioid receptor internalization and opioid tolerance. This new model suggests that the opioid receptor internalization actually prevents or delays the development of opioid tolerance, and that the effectiveness with which opioid agonists in- duce μ opioid–receptor internalization is inversely pro- portional to their potency to induce tolerance. In vitro data show that morphine is inefficient in inducing μ opi- oid–receptor internalization but is potent in producing Page 7 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Table 3 Classification of RGS proteins S bf il M b Table 3 Classification of RGS proteins Table 3 Classification of RGS proteins Subfamily Members Common features outside of RGS domain RZ (or A) string GAIP/RGS19, RGSZ1/RGS20, RGSZ2/RGS17, Ret-RGS1 N-terminal cysteine R4 (or B) RGS1, RGS2, RGS3, RGS4, RGS5, RGS8, RGS13, RGS16, RGS18 without specified domains or just an N-terminal amphipathic helix R7 (or C) RGS6, RGS7, RGS9, RGS11 a GGL (G-like) domain and a DEP domain R12 (or D) RGS10, RGS12, RGS14 may contain PDZ, PTB, or RBD domains RA (or E) axin, conductin GSK binding, ß-catenin binding, PP2A homology, and dimerization domains GEF (or F) p115-RhoGEF, PDZ-RhoGEF, LARG DH and PH domains GRK (or G) GRK1, GRK2, GRK3, GRK4, GRK5, GRK6, GRK7 G-protein receptor kinase domain and PH domain Common features outside of RGS domain N-terminal cysteine G-protein receptor kinase domain and PH domain tolerance. Effects of age on opioid receptor internalization in opioid tolerance In contrast, the selective μ agonist DAMGO induces μ receptor internalization efficiently and does not produce tolerance readily [49]. central nervous system [55-57]. The interaction involves intracellular second messengers that mediate opioid ac- tion, leading to analgesia and the development of toler- ance. MOR activation initiates multiple cellular signaling cascades that result in protein kinase C (PKC) γ-subtype translocation [58] and the inhibition of Ca2+ channels [59]. In contrast, NMDA receptor activation is associated with PKC activation and an increase in intracellular Ca2 + [60]. NMDA receptors attenuate opioid receptor func- tion by facilitating Ca2+ entry and PKC phosphorylation of the Giα2 protein, resulting in opioid receptor–G pro- tein uncoupling [61]. The phosphorylation of opioid receptors by GRK and the binding of β-arrestin initiate the internalization of the ligand-bound receptors and a subsequent recycling of the receptors back to the cell surface (80% of interna- lized receptors are recycled from endosomes to the plasma membrane by dephosphorylation). These findings strongly support the idea that receptor internalization reduces tolerance in vivo by facilitating the recycling and resensitization of receptors. However, this model is still in a very early stage of devel- opment, and there are several facts that appear to contra- dict it. For one, the timings of in vitro opioid receptor internalization and in vivo opioid tolerance development are not correlated at all. Furthermore, it has become clear that the potency of a given opioid agonist to induce μ opi- oid–receptor internalization is not a fixed property; in- stead, it is tissue-specific and cell-type–dependent. Recent studies show that morphine, the most inefficient inducer of μ opioid receptor internalization in in vitro cell expres- sion systems, can actually induce the rapid internalization of a significant portion of μ opioid receptors in striatum neuronal cells [50] and in mouse periaqueductal grey mat- ter (PAG) neurons [51]. Uncoupling of the MOR–G protein, rather than recep- tor internalization, has been implicated as a mechanism for tolerance to morphine [62]. Inhibition of NMDA receptors, which prevents or reduces MOR–G protein uncoupling, may enhance opioid analgesia and delay the development of tolerance [63,64]. In addition to NMDA receptors, other anti-opioid systems have been discovered [65]. Several neuropep- tides, including cholecystokinin (CCK), neuropeptide FF (NPFF), and nociceptin (orphanin FQ), have a pharmacological effect that negatively modulates the opioid system. Effects of age on opioid receptor internalization in opioid tolerance Prolactin-releasing peptide (PrRP) has recently been identified as the natural agonist of GPR10, which was previously considered an orphan receptor. This study identified the PrRP-GPR10 sys- tem as a potent negative modulator of the opioid sys- tem, so the PrRP-GPR10 system may be involved in the development of opioid tolerance and dependence. Opioid receptor internalization is one of the most im- portant events in opioid tolerance. Although there is no direct evidence that the internalization of opioid recep- tors is affected by age, some studies have shown that the ligand-induced internalization of epidermal growth factor (EGF) and interleukin 2 (IL2) receptors and cla- thrin-associated endocytosis are age-dependent [52-54]. From this evidence, one could infer that internalization might also occur in opioid receptor systems. Neurokinins and calcitonin gene-related peptide (CGRP) are expressed in primary sensory afferents and have thus been proposed to play important roles in noci- ceptive sensation. Menard et al [66] investigated the ex- pression of CGRP and its receptors in the dorsal horn of the spinal cord during the development of tolerance to continuous intrathecal administration of morphine. In animals that developed opioid tolerance, there was a sig- nificant increase in CGRP-like immunostaining and a de- crease (30-45%) in [125I]human CGRP α binding in the laminae I, II, and III of the dorsal horn of the spinal Age-related differential expression and function of G proteins and RGS proteins in opioid tolerance RGS proteins are a family of cellular proteins that con- tain a homologous RGS domain of approximately 120 amino acids in length. RGS proteins include GTPase-ac- celerating protein (GAP) activity within their characteris- tic RGS domain and various other receptor signaling- related properties of their other functional domains. Multiple RGS proteins have been shown to negatively regulate G protein–mediated opioid signaling, facilitate opioid receptor desensitization and internalization, and affect the rate at which opioid tolerance develops [71]. RGS proteins specifically interact with Gα subunits and enhance the intrinsic GTPase activity of Gα to accelerate GTP hydrolysis, thereby facilitating the switch of Gα from a GTP-bound active state to a GDP-bound inactive state. It was not until recently that RGS proteins were recognized as key players in opioid signaling and toler- ance. An increasing number of studies show that specific RGS proteins, especially GAIP/RGS19, RGS2, RGS4, RGS8, and RGS9-2, play crucial roles in opioid receptor signaling and opioid tolerance (Table 4) [72]. They not only inactivate G protein, which terminates opioid ac- tion, but also function as active components in opioid receptor desensitization, internalization, recycling, and degradation [73]. The morphine tolerance observed in newborn rats may be mediated by metabotropic glutamate receptors (mGluRs), because mGluRs are coupled to various second messengers, including Ca2+ cascades. The AMPA receptor may also activate the Ca2+-dependent second messenger systems in neural circuits involved in opiate tolerance in newborn rats. A study showed that treatment with the se- lective AMPA receptor antagonist NBQX or the group II mGluR agonist DCG-IV effectively suppressed the expres- sion of morphine-induced tolerance and dependence in infant rats. These effects were not age-dependent [68]. Spinal glutamate, nitric oxide, cyclooxygenase (COX), and prostaglandin-related systems are all known to be acti- vated by opioid-related analgesia. The enzymatic activity of COX, and to a lesser extent nitric oxide, also contributes to the development of spinal morphine tolerance. Other neuropeptides known to have anti-opioid effects (CGRP, substance P [SP], neuropeptide Y [NPY], galanin) have also been shown to have age-dependent expression and activ- ities. One study showed that CGRP-like immunoreactivity was significantly increased in the primary afferents of the spinal dorsal horn during the development of morphine tolerance [24]. Effect of age on the expression and function of NMDA receptor and other proteins that play important roles in opioid tolerance It has been demonstrated that MOR and NMDA are colocalized in individual neurons in many areas of the Page 8 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 cord. These changes suggest that CGRP may play a role in the development of opioid tolerance. morphine exposure. The greater sensitivity of morphine- mediated CGRP and SP induction in cultured DRG neu- rons from older rats suggests that morphine tolerance may be more likely to develop in the elderly. In addition, Powell et al [67] discovered that in rats that were given repeated doses of morphine, coadminis- tration of SR140333—a selective substance P receptor (neurokinin-1) antagonist—augmented the acute effects of morphine, prevented morphine tolerance, and reversed established tolerance. These findings suggest that the activity of neurokinin also contributes to the in- duction of opioid analgesic tolerance. Calmodulin (CaM) plays an important role in opioid receptor signaling. Age-induced changes in the CaM sys- tem were observed by Hoskins et al [69]. These observa- tions included the following differences: First, CaM levels were lowest in young rats, higher in old rats, and highest in mature rats. Second, Ca2+-Mg2+ ATPase activ- ity was progressively higher in young, mature, and old rats. Third, particulate protein kinase activity was pro- gressively lower in young, mature, and old rats. g Development and aging differentially regulate the ex- pression and function of the NMDA receptor and its subu- nits [44]. A study showed that NMDA antagonist was not effective in blocking the development of morphine toler- ance in 7-day-old rats, was partially effective in 14-day-old rats, and was fully effective in 21-day-old or older rats [68]. These data suggest that there is a transition age, around the second postnatal week in the rat, at which NMDA receptors begin to play a role in the development of morphine tolerance. One possible explanation for opi- oid tolerance in newborn rats is that other mechanisms, such as NO production, activate the intracellular Ca2+ re- lease and evoke the Ca2+-dependent second messenger system. A second possibility is that channels besides the NMDA receptors allow significant Ca2+ production in the infant CNS, thereby facilitating opiate action. Development and aging differentially regulate the ex- pression and function of PKC and its various isoforms, as well as other protein kinases [70]. Effect of age on the expression and function of NMDA receptor and other proteins that play important roles in opioid tolerance Taken together, these findings make it plausible to hypothesize that age- dependent changes in the expression and function of the major factors are the molecular and cellular bases of age-dependent opioid analgesia and tolerance. Age-related differential expression and function of G proteins and RGS proteins in opioid tolerance Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Table 4 Effect of age on the expression and functional properties of multiple opioid recep Opioid receptor type Animal models and experimental means Observed age-dependent receptors μ DAMGO and dihydromorphine binding assays in brains of mice of various ages Bmax values and selectivity f a function of age DAMGO binding with light and heavy membranes of rat brain The subcellular distribution o DAMGO binding in the spinal cord of rats of different ages The Kd value for DAMGO is s than in the young and matu of spinal opioid receptors fo Effect of opioid agonists on warm water–stimulated tail-withdrawal in young (3 months) and old (24 months) male rats Old male rats are more sens opioids than young ones; th sensitivity are most apparent higher nociceptive intensitie EM ICC with rat caudate-putamen nucleus The developmental expressio asymmetric synapse formatio δ Quantitative autoradiography with opioid receptor binding in guinea pig brain With age, opioid receptor de and increases in the neocort EM ICC with rat caudate-putamen nucleus Opioid receptor expression g adulthood and correlates wit Agonists DSLET and DPDPE used to stimulate high-affinity GTPase activity in young (4 weeks) and old (16 weeks) guinea pig striatal membranes Agonists can stimulate high- membranes from old guinea indicating age-dependent op coupling κ Quantitative autoradiography with κ opioid receptor binding in guinea pig brain Expression of opioid recepto IP injection of selective κ opioid agonist U50,488 H in young (6–8 weeks) and old (21–22 months) mice Qualitative sex differences in dependent on age Tested effect of opioid agonists on the warm water- stimulated tail-withdrawal in young (3 months) and old (21 months) male rats Aged male rats are more sen antinociceptive effects of op ORL1 In situ hybridization and autoradiography with human, rat, and mouse brains Differential expression of OR brains IP, intraperitoneal Table 4 Effect of age on the expression and functional properties of multiple opioid receptors Opioid receptor type Animal models and experimental means Observed age-dependent express receptors μ DAMGO and dihydromorphine binding assays in brains of mice of various ages Bmax values and selectivity for -sele a function of age DAMGO binding with light and heavy membranes of rat brain The subcellular distribution of opioid DAMGO binding in the spinal cord of rats of different ages The Kd value for DAMGO is significa than in the young and mature rats, of spinal opioid receptors for DAMG Effect of opioid agonists on warm water–stimulated tail-withdrawal in young (3 months) and old (24 months) male rats Old male rats are more sensitive to t opioids than young ones; the age-re sensitivity are most apparent when higher nociceptive intensities are tes EM ICC with rat caudate-putamen nucleus The developmental expression of op asymmetric synapse formation δ Quantitative autoradiography with opioid receptor binding in guinea pig brain With age, opioid receptor density de and increases in the neocortex EM ICC with rat caudate-putamen nucleus Opioid receptor expression gradually adulthood and correlates with synap Agonists DSLET and DPDPE used to stimulate high-affinity GTPase activity in young (4 weeks) and old (16 weeks) guinea pig striatal membranes Agonists can stimulate high-affinity G membranes from old guinea pigs bu indicating age-dependent opioid rec coupling κ Quantitative autoradiography with κ opioid receptor binding in guinea pig brain Expression of opioid receptors decre IP injection of selective κ opioid agonist U50,488 H in young (6–8 weeks) and old (21–22 months) mice Qualitative sex differences in opioid dependent on age Tested effect of opioid agonists on the warm water- stimulated tail-withdrawal in young (3 months) and old (21 months) male rats Aged male rats are more sensitive th antinociceptive effects of opioid ago ORL1 In situ hybridization and autoradiography with human, rat, and mouse brains Differential expression of ORL1 foun brains IP, intraperitoneal Table 4 Effect of age on the expression and functional properties of multiple opioid receptors Opioid receptor type Animal models and experimental means Observed age-dependent express receptors Observed age-dependent expression and activities of opioid receptors Observed age-dependent expression and activities of opioid receptors Bmax values and selectivity for -selective opioid ligands change as a function of age The subcellular distribution of opioid receptors changes with age The subcellular distribution of opioid receptors changes with age The Kd value for DAMGO is significantly higher in the aged rats than in the young and mature rats, indicating a decreased affinity of spinal opioid receptors for DAMGO Old male rats are more sensitive to the antinociceptive effects of opioids than young ones; the age-related differences in opioid sensitivity are most apparent when lower-efficacy opioids and higher nociceptive intensities are tested With age, opioid receptor density decreases in the globus pallidus and increases in the neocortex Opioid receptor expression gradually increases from birth to adulthood and correlates with synapse formation Agonists can stimulate high-affinity GTPase activity in striatal membranes from old guinea pigs but not from young ones, indicating age-dependent opioid receptor-G protein functional coupling Qualitative sex differences in opioid analgesia in the mice are dependent on age Aged male rats are more sensitive than young ones to the antinociceptive effects of opioid agonists Differential expression of ORL1 found in developing and adult brains Differential expression of ORL1 found in developing and adult brains IP, intraperitoneal Interestingly, the alternative splicing pattern of RGS9 is regulated by development and age. Age-related differential expression and function of G proteins and RGS proteins in opioid tolerance In addition, DRG neurons cultured from 10-month-old rats were more sensitive to morphine treat- ment, in that lower concentrations and shorter treatment periods could induce apparent increases in the number of CGRP-and SP-IR neurons, suggesting that aging plays a role in the responsiveness of DRG neurons to repeated The expression and activities of inhibitory G proteins that are coupled to opioid receptors are also age- dependent [74]. Development and aging differentially regulate G protein-mediated AC signaling; the activities of adenylate cyclase, guanylate cyclase, cyclic AMP phospho- diesterase, and cyclic GMP phosphodiesterase in the frontal cortex and cerebellum show age-related changes Page 9 of 12 Page 9 of 12 Zhao et al. Authors’ contributions ZJ d f h ZJ conceived of the review and drafted the manuscript. XX participated in the design of the figures and helped to draft the manuscript. XGX and PP participated in the design of the review and helped to revise the manuscript. HYG helped to revise the manuscript. All authors have read and approved the final manuscript. Author details 1 1Department of Anesthesia, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China. 2Department of Anesthesiology and Perioperative Care, University of California, San Francisco, CA 94143, USA. 3Department of Anesthesiology and Perioperative Care, University of California, San Francisco, CA 94143, USA. 4Department of Anesthesia, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, No.1 Shuaifuyuan Str., Wangfujing Ave., Dongcheng District, Beijing 100730, China. Competing interests N f h h h None of the authors has any financial or scientific conflicts of interest with regard to the research described in this manuscript. Conclusions Age is an important physiological factor that influences opioid drug action. The subject of opioid tolerance and aging has drawn great attention and interest. To under- stand the molecular mechanisms of the age-dependency of opioid tolerance is important for both basic scientific research and clinical practice. A thorough investigation of the patterns of tolerance induced by various type-se- lective opioids, as well as the differential expression and functions (including internalization) of multiple opioid receptors during opioid tolerance development, in ani- mals of different ages may lead to new insights into the pharmaceutical application of type-selective opioid drugs for improving opioid analgesia and delaying tolerance occurrence in chronic pain therapy. In addition to pro- viding novel insights into the best opioid agonists to use in various age groups of patients to avoid rapid tolerance development, further defining the concept of age- dependent tolerance will help to educate physicians who treat with chronic pain patients of different ages. Cur- rently, little attention is paid to the age of the patient when clinicians decide whether to prescribe daily opioids to patients with nonmalignant pain conditions. Upfront discussions of the appropriate dosing of opioids in young patients for chronic pain conditions can greatly benefit from published data regarding the age-dependent mechanisms of opioid tolerance. In addition, the appar- ent age-dependency of opioid analgesia and tolerance suggests that age should be included as a parameter in studies of opioid analgesia and tolerance. Received: 30 November 2011 Accepted: 9 May 2012 Published: 21 May 2012 Received: 30 November 2011 Accepted: 9 May 2012 Published: 21 May 2012 Age-related differential expression and function of G proteins and RGS proteins in opioid tolerance During embryonic and early postnatal development, two RGS9 transcripts of ap- proximately 1.4 kb and 1.8 kb are detected in whole brain. After postnatal day 10, the expression of 1.8-kb transcript increases progressively until adulthood and becomes con- centrated in the striatum, while 1.4-kb transcript expres- sion gradually decreases to undetectable levels [80]. Recently, immunochemical staining with specific RGS9 antibody RGS9 proteins (predominantly RGS9-2, as the observed distributions showed) were found to be differen- tially expressed in the nervous system, notably in the noci- ceptive system, of young and old rats, which may shed light on the mechanisms of age-dependent opioid anal- gesia and tolerance [81]. The functions and activities of RGS proteins may also be age-dependent. It is reported that RGS1 can significantly increase GABAergic agonist- stimulated GTPase activity in the cerebral cortex of 90- day-old rats but cannot do so in 12-day-old rats [82]. These findings strongly support the hypothesis that age plays an important part in RGS expression and function. during morphine treatment. Such changes are not due to any age-related changes in the pharmacokinetics of mor- phine [75]. The importance of development and age in determining the expression and function of RGS genes and proteins has just begun to draw attention. Recent studies show that the expression, regulation, and function of specific RGS members are indeed affected by development and age. During embryonic development and neuronal differenti- ation, the expression of RGS4 occurs in a highly dynamic and transient manner in a small set of peripheral and cen- tral neuronal precursor cells, and it is regulated by the neural type-specific transcription factor Phox2b [76]. However, in the developing postnatal brain, RGS4 expres- sion increases in the deep neuronal layers of the neocortex, the CA1/2 area of the hippocampus, and the cerebellum [77]. In the adult brain, RGS4 continues its dense expres- sion in the neocortex, thalamus, and cerebellum, but not in the hippocampus. The expressions of RGS2 and RGS7 are differentially regulated in the embryonic, early postna- tal, and adult brain in a region-specific manner [77-79]. Page 10 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Age-related differences in opioid pharmacokinetics One important issue regarding the age-dependence of opi- oid tolerance and recovery is the difference in opioid drug metabolism (pharmacokinetics) between younger and older individuals. It has been well established that the rates of me- tabolism, blood–brain transport, and clearance of opioids in different age groups of animals and humans differ signifi- cantly [89-91]. These differences substantially affect the in vivo pharmacological effects of opioids. However, several studies have demonstrated that the development of toler- ance to the analgesic and hyperthermic effects of morphine is not related to its pharmacokinetics in serum but may be related to the modification of opioid receptor signal trans- duction pathways in the CNS [92,93]. Abbreviations RGS proteins also play roles in regulating neuronal de- velopment, cell proliferation, differentiation, and plasti- city [83-86]. In addition, the expression of certain RGS proteins is found to be modulated by some age-related diseases, such as Parkinson's and Alzheimer's diseases [87,88]. Such age-associated changes in RGS protein ex- pression may in turn alter the effects of opioids. RGS: regulators of G protein signaling; NMDA: N-methyl-D-aspartic acid; VAS: visual analog scale; DRG: dorsal root ganglion; ORL1: opioid receptor-like 1; GPCR: G protein-coupled, seven-transmembrane receptor superfamily; AC: adenylyl cyclase; cAMP: cyclic AMP; MAPK: mitogen-activated protein kinase; GRKs: G protein-coupled receptor kinases; MOR: μ-opioid receptor; PAG: periaqueductal grey matter; EGF: epidermal growth factor; IL2: interleukin 2; PKC: protein kinase C; CCK: cholecystokinin; NPFF: neuropeptide FF; PrRP: prolactin-releasing peptide; COX: cyclooxygenase; CGRP: calcitonin gene-related peptide; mGluRs: metabotropic glutamate receptors; NPY: neuropeptide Y; SP: substance P; GAP: GTPase-accelerating protein. References 1. Vigano A, Bruera E, Suarez-Almazor ME: Age, pain intensity, and opioid dose in patients with advanced cancer. Cancer 1998, 83:1244–1250. 1. Vigano A, Bruera E, Suarez-Almazor ME: Age, pain intensity, and opioid dose in patients with advanced cancer. Cancer 1998, 83:1244–1250. 2. Hall S, Gallagher RM, Gracely E, Knowlton C, Wescules D: The terminal cancer patient: effects of age, gender, and primary tumor site on opioid dose. Pain Med 2003, 4:125–134. 3. Clark JD: Chronic pain prevalence and analgesic prescribing in a general medical population. J Pain Symptom Manage 2002, 23:131–137. S SR O i id h f h i i f 3. Clark JD: Chronic pain prevalence and analgesic prescribing in a general medical population. J Pain Symptom Manage 2002, 23:131–137. 4. Savage SR: Opioid therapy of chronic pain: assessment of consequences. Acta Anaesthesiol Scand 1999, 43:909–917. 4. Savage SR: Opioid therapy of chronic pain: assessment of consequences. Acta Anaesthesiol Scand 1999, 43:909–917. 5. Paice JA, Penn RD, Shott S: Intraspinal morphine for chronic pain: a retrospective, multicenter study. J Pain Symptom Manage 1996, 11:71–80. 6. Mystakidou K, Parpa E, Tsilika E, Mavromati A, Smyrniotis V, Georgaki S, Vlahos L: Long-term management of noncancer pain with transdermal therapeutic system-fentanyl. J Pain 2003, 4:298–306. 7. Robinson RC, Gatchel RJ, Polatin P, Deschner M, Noe C, Gajraj N: Screening for problematic prescription opioid use. Clin J Pain 2001, 17:220–228. 8. Buntin-Mushock C, Phillip L, Moriyama K, Palmer PP: Age-dependent opioid escalation in chronic pain patients. Anesth Analg 2005, 100:1740–1745. 5. Paice JA, Penn RD, Shott S: Intraspinal morphine for chronic pain: a retrospective, multicenter study. J Pain Symptom Manage 1996, 11:71–80. 6. Mystakidou K, Parpa E, Tsilika E, Mavromati A, Smyrniotis V, Georgaki S, Vlahos L: Long-term management of noncancer pain with transdermal therapeutic system-fentanyl. J Pain 2003, 4:298–306. 5. Paice JA, Penn RD, Shott S: Intraspinal morphine for chronic pain: a retrospective, multicenter study. J Pain Symptom Manage 1996, 11:71–80. 6. Mystakidou K, Parpa E, Tsilika E, Mavromati A, Smyrniotis V, Georgaki S, Vlahos L: Long-term management of noncancer pain with transdermal therapeutic system-fentanyl. J Pain 2003, 4:298–306. 7. Robinson RC, Gatchel RJ, Polatin P, Deschner M, Noe C, Gajraj N: Screening for problematic prescription opioid use. Clin J Pain 2001, 17:220–228. 8. Buntin-Mushock C, Phillip L, Moriyama K, Palmer PP: Age-dependent opioid escalation in chronic pain patients. Anesth Analg 2005, 100:1740–1745. 6. Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Bhargava HN, Gulati A: Down-regulation of brain and spinal cord mu- opiate receptors in morphine tolerant-dependent rats. Eur J Pharmacol 1990, 190:305–311. 22. Thornton SR, Smith FL: Characterization of neonatal rat fentanyl tolerance and dependence. J Pharmacol Exp Ther 1997, 281:514–521. 47. Bernstein MA, Welch SP: mu-Opioid receptor down-regulation and cAMP- dependent protein kinase phosphorylation in a mouse model of chronic morphine tolerance. Brain Res Mol Brain Res 1998, 55:237–242. 23. Zissen MH, Zhang G, McKelvy A, Propst JT, Kendig JJ, Sweitzer SM: Tolerance, opioid-induced allodynia and withdrawal associated allodynia in infant and young rats. Neuroscience 2007, 144:247–262. 48. Stafford K, Gomes AB, Shen J, Yoburn BC: mu-Opioid receptor downregulation contributes to opioid tolerance in vivo. Pharmacol Biochem Behav 2001, 69:233–237. 24. Ma W, Zheng WH, Kar S, Quirion R: Morphine treatment induced calcitonin gene-related peptide and substance P increases in cultured dorsal root ganglion neurons. Neuroscience 2000, 99:529–539. 49. Koch T, Widera A, Bartzsch K, Schulz S, Brandenburg LO, Wundrack N, Beyer A, Grecksch G, Hollt V: Receptor endocytosis counteracts the development of opioid tolerance. Mol Pharmacol 2005, 67:280–287. 25. Przewlocki R: Opioid abuse and brain gene expression. Eur J Pharmacol 2004, 500:331–349. 50. Haberstock-Debic H, Kim KA, Yu YJ, von Zastrow M: Morphine promotes rapid, arrestin-dependent endocytosis of mu-opioid receptors in striatal neurons. J Neurosci 2005, 25:7847–7857. 26. Ammon-Treiber S, Hollt V: Morphine-induced changes of gene expression in the brain. Addict Biol 2005, 10:81–89. 51. Rodriguez-Munoz M, de la Torre-Madrid E, Gaitan G, Sanchez-Blazquez P, Garzon J: RGS14 prevents morphine from internalizing Mu-opioid receptors in periaqueductal gray neurons. Cell Signal 2007, 19:2558–2571. 27. Bagley EE, Chieng BC, Christie MJ, Connor M: Opioid tolerance in periaqueductal gray neurons isolated from mice chronically treated with morphine. Br J Pharmacol 2005, 146:68–76. 28. Przewlocki R, Przewlocka B: Opioids in neuropathic pain. Curr Pharm Des 2005, 11:3013–3025. 52. Hara H, Tanaka T, Negoro S, Deguchi Y, Nishio S, Saiki O, Kishimoto S: Age- related changes of expression of IL-2 receptor subunits and kinetics of IL-2 internalization in T cells after mitogenic stimulation. Mech Ageing Dev 1988, 45:167–175. 29. Hepler JR: Emerging roles for RGS proteins in cell signalling. Trends Pharmacol Sci 1999, 20:376–382. 30. Wang D, Sun X, Bohn LM, Sadee W: Opioid receptor homo- and heterodimerization in living cells by quantitative bioluminescence resonance energy transfer. Mol Pharmacol 2005, 67:2173–2184. 53. Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 14. Nozaki M, Akera T, Lee CY, Brody TM: The effects of age on the development of tolerance to and physical dependence on morphine in rats. J Pharmacol Exp Ther 1975, 192:506–512. 40. Pitcher JA, Freedman NJ, Lefkowitz RJ: G protein-coupled receptor kinases. Annu Rev Biochem 1998, 67:653–692. 14. Nozaki M, Akera T, Lee CY, Brody TM: The effects of age on the 41. Ferguson SS, Barak LS, Zhang J, Caron MG: G-protein-coupled receptor regulation: role of G-protein-coupled receptor kinases and arrestins. Can J Physiol Pharmacol 1996, 74:1095–1110. 15. Wang Y, Mitchell J, Moriyama K, Kim KJ, Sharma M, Xie GX, Palm 15. Wang Y, Mitchell J, Moriyama K, Kim KJ, Sharma M, Xie GX, Palmer PP: Age-dependent morphine tolerance development in the rat. Anesth Analg 2005, 100:1733–1739. 42. Luttrell LM, Lefkowitz RJ: The role of beta-arrestins in the termination and transduction of G-protein-coupled receptor signals. J Cell Sci 2002, 115:455–465. 16. Van Praag H, Frenk H: Evidence for opiate tolerance in newborn rats. Brain Res Dev Brain Res 1991, 60:99–102. 17. Thornton SR, Wang AF, Smith FL: Characterization of neonatal rat morphine tolerance and dependence. Eur J Pharmacol 1997, 340:161–167. 43. Ferrer-Alcon M, La Harpe R, Garcia-Sevilla JA: Decreased immunodensities of micro-opioid receptors, receptor kinases GRK 2/6 and beta-arrestin-2 in postmortem brains of opiate addicts. Brain Res Mol Brain Res 2004, 121:114–122. 18. Trujillo KA, Akil H: Inhibition of morphine tolerance and dependence by the NMDA receptor antagonist MK-801. Science 1991, 251:85–87. j y the NMDA receptor antagonist MK-801. Science 1991, 251:85–87. 44. Ontl T, Xing Y, Bai L, Kennedy E, Nelson S, Wakeman M, Magnusson K: Development and aging of N-methyl-D-aspartate receptor expression in the prefrontal/frontal cortex of mice. Neuroscience 2004, 123:467–479. 19. Fan GH, Wang LZ, Qiu HC, Ma L, Pei G: Inhibition of calcium/calmodulin- dependent protein kinase II in rat hippocampus attenuates morphine tolerance and dependence. Mol Pharmacol 1999, 56:39–45. p 20. Fanselow MS, Cramer CP: The ontogeny of opiate tolerance and withdrawal in infant rats. Pharmacol Biochem Behav 1988, 31:431–438. p 45. Gurevich EV, Benovic JL, Gurevich VV: Arrestin2 expression selectively increases during neural differentiation. J Neurochem 2004, 91:1404–1416. 21. Laferriere A, Colin-Durand J, Moss IR: Ontogeny of respiratory sensitivity and tolerance to the mu-opioid agonist fentanyl in rat. Brain Res Dev Brain Res 2005, 156:210–217. 46. Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Liu L, Turner JR, Yu Y, Khan AJ, Jaszewski R, Fligiel SE, Majumdar AP: Differential expression of EGFR during early reparative phase of the gastric mucosa between young and aged rats. Am J Physiol 1998, 275: G943–950. 31. Lutfy K, Hossain SM, Khaliq I, Maidment NT: Orphanin FQ/nociceptin attenuates the development of morphine tolerance in rats. Br J Pharmacol 2001, 134:529–534. 54. Blanpied TA, Scott DB, Ehlers MD: Age-related regulation of dendritic endocytosis associated with altered clathrin dynamics. Neurobiol Aging 2003, 24:1095–1104. 32. De Vries TJ, Jonker AJ, Voorn P, Mulder AH, Schoffelmeer AN: Adaptive changes in rat striatal preproenkephalin expression and dopamine- opioid interactions upon chronic haloperidol treatment during different developmental stages. Brain Res Dev Brain Res 1994, 78:175–181. 55. Gracy KN, Svingos AL, Pickel VM: Dual ultrastructural localization of mu-opioid receptors and NMDA-type glutamate receptors in the shell of the rat nucleus accumbens. J Neurosci 1997, 17:4839–4848. 33. Tseng LF, Collins KA, Wang Q: Differential ontogenesis of thermal and mechanical antinociception induced by morphine and beta-endorphin. Eur J Pharmacol 1995, 277:71–76. 56. Wang H, Gracy KN, Pickel VM: Mu-opioid and NMDA-type glutamate receptors are often colocalized in spiny neurons within patches of the caudate-putamen nucleus. J Comp Neurol 1999, 412:132–146. 34. Volterra A, Brunello N, Restani P, Galli CL, Racagni G: Ontogenetic studies on mu, delta and kappa opioid receptors in rat brain. Pharmacol Res Commun 1986, 18:979–990. 57. Commons KG, van Bockstaele EJ, Pfaff DW: Frequent colocalization of mu opioid and NMDA-type glutamate receptors at postsynaptic sites in periaqueductal gray neurons. J Comp Neurol 1999, 408:549–559. 35. Hoskins DL, Gordon TL, Crisp T: The effects of aging on mu and delta opioid receptors in the spinal cord of Fischer-344 rats. Brain Res 1998, 791:299–302. 58. Mao J, Mayer DJ: Spinal cord neuroplasticity following repeated opioid exposure and its relation to pathological pain. Ann N Y Acad Sci 2001, 933:175–184. 36. Rahman W, Dashwood MR, Fitzgerald M, Aynsley-Green A, Dickenson AH: Postnatal development of multiple opioid receptors in the spinal cord and development of spinal morphine analgesia. Brain Res Dev Brain Res 1998, 108:239–254. 59. Taddese A, Nah SY, McCleskey EW: Selective opioid inhibition of small nociceptive neurons. Science 1995, 270:1366–1369. nociceptive neurons. Science 1995, 270:1366–1369. 60. Nishizuka Y: Intracellular signaling by hydrolysis of phospholipids and activation of protein kinase C. Science 1992, 258:607–614. 60. References Mystakidou K, Parpa E, Tsilika E, Mavromati A, Smyrniotis V, Georgaki S, Vlahos L: Long-term management of noncancer pain with transdermal therapeutic system-fentanyl. J Pain 2003, 4:298–306. 7. Robinson RC, Gatchel RJ, Polatin P, Deschner M, Noe C, Gajraj N: Screening for problematic prescription opioid use. Clin J Pain 2001, 17:220–228. 8. Buntin-Mushock C, Phillip L, Moriyama K, Palmer PP: Age-dependent opioid escalation in chronic pain patients. Anesth Analg 2005, 100:1740–1745. 9. Moulin DE, Iezzi A, Amireh R, Sharpe WK, Boyd D, Merskey H: Randomised trial of oral morphine for chronic non-cancer pain. Lancet 1996, 347:143–147. 9. Moulin DE, Iezzi A, Amireh R, Sharpe WK, Boyd D, Merskey H: Randomised trial of oral morphine for chronic non-cancer pain. Lancet 1996, 347:143–147. 10. Jourdan D, Pickering G, Marchand F, Gaulier JM, Alliot J, Eschalier A: Impact of ageing on the antinociceptive effect of reference analgesics in the Lou/c rat. Br J Pharmacol 2002, 137:813–820. 10. Jourdan D, Pickering G, Marchand F, Gaulier JM, Alliot J, Eschalier A: Impact of ageing on the antinociceptive effect of reference analgesics in the Lou/c rat. Br J Pharmacol 2002, 137:813–820. 11. O'Callaghan JP, Holtzman SG: Prenatal administration of morphine to the rat: tolerance to the analgesic effect of morphine in the offspring. J Pharmacol Exp Ther 1976, 197:533–544. 12. Windh RT, Little PJ, Kuhn CM: The ontogeny of mu opiate tolerance and dependence in the rat: antinociceptive and biochemical studies. J Pharmacol Exp Ther 1995, 273:1361–1374. 13. Zhu H, Barr GA: Ontogeny of NMDA receptor-mediated morphine tolerance in the postnatal rat. Pain 2003, 104:437–447. 13. Zhu H, Barr GA: Ontogeny of NMDA receptor-mediated morphine tolerance in the postnatal rat. Pain 2003, 104:437–447. Page 11 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 87. Tekumalla PK, Calon F, Rahman Z, Birdi S, Rajput AH, Hornykiewicz O, Di Paolo T, Bedard PJ, Nestler EJ: Elevated levels of DeltaFosB and RGS9 in striatum in Parkinson's disease. Biol Psychiatry 2001, 50:813–816. 64. Ruscheweyh R, Ikeda H, Heinke B, Sandkuhler J: Distinctive membrane and discharge properties of rat spinal lamina I projection neurones in vitro. J Physiol 2004, 555:527–543. 65. Ueda H, Inoue M, Mizuno K: New approaches to study the development of morphine tolerance and dependence. Life Sci 2003, 74:313–320. 88. Muma NA, Mariyappa R, Williams K, Lee JM: Differences in regional and subcellular localization of G(q/11) and RGS4 protein levels in Alzheimer's disease: correlation with muscarinic M1 receptor binding parameters. Synapse 2003, 47:58–65. 66. Menard DP, van Rossum D, Kar S, Jolicoeur FB, Jhamandas K, Quirion R: Tolerance to the antinociceptive properties of morphine in the rat spinal cord: alteration of calcitonin gene-related peptide-like immunostaining and receptor binding sites. J Pharmacol Exp Ther 1995, 273:887–894. 89. Van Crugten JT, Somogyi AA, Nation RL, Reynolds G: The effect of old age on the disposition and antinociceptive response of morphine and morphine-6 beta-glucuronide in the rat. Pain 1997, 71:199–205. 67. Powell KJ, Quirion R, Jhamandas K: Inhibition of neurokinin-1-substance P receptor and prostanoid activity prevents and reverses the development of morphine tolerance in vivo and the morphine-induced increase in CGRP expression in cultured dorsal root ganglion neurons. Eur J Neurosci 2003, 18:1572–1583. 90. Minto CF, Schnider TW, Egan TD, Youngs E, Lemmens HJ, Gambus PL, Billard V, Hoke JF, Moore KH, Hermann DJ, Muir KT, Mandema JW, Shafer SL: Influence of age and gender on the pharmacokinetics and pharmacodynamics of remifentanil. I. Model development. Anesthesiology 1997, 86:10–23. 68. Zhu H, Barr GA: Opiate withdrawal during development: are NMDA receptors indispensable?. Trends Pharmacol Sci 2001, 22:404–408. 91. Bouwmeester NJ, Anderson BJ, Tibboel D, Holford NH: Developmental pharmacokinetics of morphine and its metabolites in neonates, infants and young children. Br J Anaesth 2004, 92:208–217. 69. Hoskins B, Ho IK, Meydrech EF: Effects of aging and morphine administration on calmodulin and calmodulin-regulated enzymes in striata of mice. J Neurochem 1985, 44:1069–1073. 92. Bhargava HN, Villar VM, Rahmani NH, Larsen AK: Studies on the possible role of pharmacokinetics in the development of tolerance to morphine in the rat. Gen Pharmacol 1992, 23:1199–1204. 70. Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Pascale A, Govoni S, Battaini F: Age-related alteration of PKC, a key enzyme in memory processes: physiological and pathological examples. Mol Neurobiol 1998, 16:49–62. 93. Gardell LR, King T, Ossipov MH, Rice KC, Lai J, Vanderah TW, Porreca F: Opioid receptor-mediated hyperalgesia and antinociceptive tolerance induced by sustained opiate delivery. Neurosci Lett 2006, 396:44–49. 71. Ross EM, Wilkie TM: GTPase-activating proteins for heterotrimeric G proteins: regulators of G protein signaling (RGS) and RGS-like proteins. Annu Rev Biochem 2000, 69:795–827. 72. Xie GX, Palmer PP: RGS proteins: new players in the field of opioid signaling and tolerance mechanisms. Anesth Analg 2005, 100:1034–1042. doi:10.1186/1744-8069-8-38 Cite this article as: Zhao et al.: Molecular and cellular mechanisms of the age-dependency of opioid analgesia and tolerance. Molecular Pain 2012 10:38. 73. Singleton MA, Rosen JI, Fisher DM: Pharmacokinetics of fentanyl in the elderly. Br J Anaesth 1988, 60:619–622. 74. Ihnatovych I, Novotny J, Haugvicova R, Bourova L, Mares P, Svoboda P: Ontogenetic development of the G protein-mediated adenylyl cyclase signalling in rat brain. Brain Res Dev Brain Res 2002, 133:69–75. 75. Burton CK, Ho IK, Hoskins B: Evidence for involvement of cyclic GMP phosphodiesterase in morphine tolerance. J Pharmacol Exp Ther 1990, 252:104–111. 76. Grillet N, Dubreuil V, Dufour HD, Brunet JF: Dynamic expression of RGS4 in the developing nervous system and regulation by the neural type- specific transcription factor Phox2b. J Neurosci 2003, 23:10613–10621. 77. Ingi T, Aoki Y: Expression of RGS2, RGS4 and RGS7 in the developing postnatal brain. Eur J Neurosci 2002, 15:929–936. 78. Gold SJ, Ni YG, Dohlman HG, Nestler EJ: Regulators of G-protein signaling (RGS) proteins: region-specific expression of nine subtypes in rat brain. J Neurosci 1997, 17:8024–8037. 79. Wilson LD, Ross SA, Lepore DA, Wada T, Penninger JM, Thomas PQ: Developmentally regulated expression of the regulator of G-protein signaling gene 2 (Rgs2) in the embryonic mouse pituitary. Gene Expr Patterns 2005, 5:305–311. 80. Thomas EA, Danielson PE, Sutcliffe JG: RGS9: a regulator of G-protein signalling with specific expression in rat and mouse striatum. J Neurosci Res 1998, 52:118–124. 81. Kim KJ, Moriyama K, Han KR, Sharma M, Han X, Xie GX, Palmer PP: Differential expression of the regulator of G protein signaling RGS9 protein in nociceptive pathways of different age rats. Brain Res Dev Brain Res 2005, 160:28–39. 82. Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Nishizuka Y: Intracellular signaling by hydrolysis of phospholipids and activation of protein kinase C. Science 1992, 258:607–614. 37. Zhang AZ, Pasternak GW: Ontogeny of opioid pharmacology and receptors: high and low affinity site differences. Eur J Pharmacol 1981, 73:29–40. activation of protein kinase C. Science 1992, 258:607–614. 61. Fan GH, Zhao J, Wu YL, Lou LG, Zhang Z, Jing Q, Ma L, Pei G: N-Methyl-D- aspartate attenuates opioid receptor-mediated G protein activation and this process involves protein kinase C. Mol Pharmacol 1998, 53:684–690. 38. Hoskins B, Ho IK: Age-induced differentiation of morphine's effect on cyclic nucleotide metabolism. Neurobiol Aging 1987, 8:473–476. 62. Kieffer BL, Evans CJ: Opioid tolerance-in search of the holy grail. Cell 2002 108:587–590. 39. Bardo MT, Bhatnagar RK, Gebhart GF: Differential effects of chronic morphine and naloxone on opiate receptors, monoamines, and morphine-induced behaviors in preweanling rats. Brain Res 1982, 256:139–147. 63. Nicoll RA, Malenka RC: Expression mechanisms underlying NMDA receptor-dependent long-term potentiation. Ann N Y Acad Sci 1999, 868:515–525. Page 12 of 12 Zhao et al. Molecular Pain 2012, 10:38 http://www.molecularpain.com/content/10/1/38 Stohr J, Bourova L, Hejnova L, Ihnatovych I, Novotny J, Svoboda P: Increased baclofen-stimulated G protein coupling and deactivation in rat brain cortex during development. Brain Res Dev Brain Res 2004, 151:67–73. Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit 83. Yu JH, Wieser J, Adams TH: The Aspergillus FlbA RGS domain protein antagonizes G protein signaling to block proliferation and allow development. EMBO J 1996, 15:5184–5190. Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: 84. Ingi T, Krumins AM, Chidiac P, Brothers GM, Chung S, Snow BE, Barnes CA, Lanahan AA, Siderovski DP, Ross EM, Gilman AG, Worley PF: Dynamic regulation of RGS2 suggests a novel mechanism in G-protein signaling and neuronal plasticity. J Neurosci 1998, 18:7178–7188. • Convenient online submission 85. Granderath S, Stollewerk A, Greig S, Goodman CS, O'Kane CJ, Klambt C: loco encodes an RGS protein required for Drosophila glial differentiation. Development 1999, 126:1781–1791. 86. Wu C, Zeng Q, Blumer KJ, Muslin AJ: RGS proteins inhibit Xwnt-8 signaling in Xenopus embryonic development. Development 2000, 127:2773–2784. 86. Wu C, Zeng Q, Blumer KJ, Muslin AJ: RGS proteins inhibit Xwnt-8 signaling in Xenopus embryonic development. Development 2000, 127:2773–2784.
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The Great Flare of 2021 November 19 on AD Leonis
Astronomy & astrophysics
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1. Introduction has an effective temperature of Teff= 3414 ± 100 K and a radius of R∗= 0.426 ± 0.049 R⊙(Houdebine et al. 2016). Its rotation period of 2.23+0.36 −0.27 d (measured on the MOST light curve; Hunt-Walker et al. 2012) and its X-ray luminosity of log LX [erg s−1] = 28.8 (Robrade & Schmitt 2005) place the star in the saturated regime of the rotation-activity relation, where the X-ray emission level does not depend on rotation. For M dwarfs, the spin-down and associated diminishing of activity last up to ∼1 Gyr (Magaudda et al. 2020; Johnstone et al. 2021). Therefore it is difficult to place an age constraint on AD Leo. While it appears to be a typical M dwarf star based on its rotation and X-ray emission level, it is certainly one of the most frequently studied stars in the northern hemisphere. Contemporaneous multiwavelength data during flares are crucial for understanding the physics of the flare process. Prominent characteristics expected from the standard solar flare scenario (the so-called CSHKP model) include a time lag between diag- nostics for the impulsive and the gradual phase (see, e.g., Benz 2002) and a relation between nonthermal and thermal emission, the so-called Neupert effect (Neupert 1968), which was occasionally observed in large stellar flares as a corre- spondence between the profile of the radio luminosity and the time-derivative of the X-ray luminosity (e.g., Güdel et al. 2002; Osten et al. 2007). Its extraordinary brightness originates in its favorable sky position. It has caused AD Leo to become the prototype for M-type dwarf stars, which account for ∼75% of the stars in the Galaxy (e.g., Chabrier 2001). The number of planets known to orbit such stars has been estimated to be very high, especially for low-mass planets, which are the most suitable candidates for being habitable (Dressing & Charbonneau 2013; Sabotta et al. 2021). An entire space mission is dedicated to the discovery of planets around M dwarfs, the Transiting Exoplanet Survey Satel- lite (TESS; Ricker et al. 2014). Stellar flares are also known to be a major driver for the evolution of planet atmospheres (e.g., Owen et al. 2020). How- ever, most exoplanet systems are too distant for a detailed char- acterization of the high-energy (X-ray and UV) emission of the host star. The Great Flare of 2021 November 19 on AD Leonis Simultaneous XMM-Newton and TESS observations B. Stelzer1,2, M. Caramazza1, S. Raetz1, C. Argiroffi2,3, and M. Coffaro1 1 Institut für Astronomie & Astrophysik, Eberhard-Karls-Universität Tübingen, Sand 1, 72076 Tübingen, Germany e-mail: stelzer@astro.uni-tuebingen.de g 2 INAF – Osservatorio Astronomico di Palermo, Piazza del Parlamento 1, 90134 Palermo, Italy 3 Dipartimento di Fisica e Chimica, Università degli Studi di Palermo, Piazza del Parlamento 1, 90134 Palermo, Italy Received 30 July 2022 / Accepted 13 September 2022 Received 30 July 2022 / Accepted 13 September 2022 ABSTRACT We present a detailed analysis of a superflare on the active M dwarf star AD Leonis. The event presents a rare case of a stellar flare that was simultaneously observed in X-rays (with XMM-Newton) and in the optical (with the Transiting Exoplanet Survey Satellite, TESS). The radiated energy in the 0.2−12 keV X-ray band (1.26±0.01×1033 erg) and the bolometric value (EF,bol = 5.57±0.03×1033 erg) place this event at the lower end of the superflare class. The exceptional photon statistics deriving from the proximity of AD Leo has enabled measurements in the 1−8 Å GOES band for the peak flux (X1445 class) and integrated energy (EF,GOES = 4.30 ± 0.05 × 1032 erg), which enables a direct comparison with data on flares from our Sun. From extrapolations of empirical relations for solar flares, we estimate that a proton flux of at least 105 cm−2 s−1 sr−1 accompanied the radiative output. With a time lag of 300 s between the peak of the TESS white-light flare and the GOES band flare peak as well as a clear Neupert effect, this event follows the standard (solar) flare scenario very closely. Time-resolved spectroscopy during the X-ray flare reveals, in addition to the time evolution of plasma temperature and emission measure, a temporary increase in electron density and elemental abundances, and a loop that extends into the corona by 13% of the stellar radius (4 × 109 cm). Independent estimates of the footprint area of the flare from TESS and XMM- Newton data suggest a high temperature of the optical flare (25 000 K), but we consider it more likely that the optical and X-ray flare areas represent physically distinct regions in the atmosphere of AD Leo. Key words. stars: flare – stars: activity – stars: rotation – stars: coronae – stars: individual: AD Leo – X-rays: stars pen Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This article is published in open access under the Subscribe-to-Open model. Subscribe to A&A to support open access publication. A&A 667, L9 (2022) https://doi.org/10.1051/0004-6361/202244642 c⃝B. Stelzer et al. 2022 A&A 667, L9 (2022) https://doi.org/10.1051/0004-6361/202244642 c⃝B. Stelzer et al. 2022 A&A 667, L9 (2022) https://doi.org/10.1051/0004-6361/202244642 c⃝B. Stelzer et al. 2022 Astronomy & Astrophysics LETTER TO THE EDITOR 1. Introduction Therefore, models for the effects of stellar irra- diation on planets are often based on the observed properties of individual well-known flare stars. Most notably, a proto- typical flare on AD Leo, the so-called ‘Great Flare of 1985’ (Hawley & Pettersen 1991), has been the basis for seminal work on the impact of stellar variability on planetary chemistry (Segura et al. 2010; Tilley et al. 2019). Using the observed UV spectrum of the 1985 AD Leo flare, Venot et al. (2016) simulated the effect of stellar flares onto exo- planet spectra and found that the stellar flare radiation can induce AD Leo is an M-type main-sequence star (SpT M3.5) at a distance of 4.966 ± 0.002 pc (Gaia Collaboration 2020). It L9, page 1 of 9 A&A 667, L9 (2022) Fig. 1. Light curves of the superflare. Top panel: XMM-Newton EPIC/pn count rate in 0.2−12 keV (red) and in the GOES band (1.5−12.4 keV; green). The binning adapted to the TESS light curve in fast cadence (20 s) is shown in the bottom panel (black circles), where it is overlaid with the time derivative of the X-ray luminosity (open diamonds). The thick dashed vertical line marks the time of the peak of the flare flux in the TESS light curve, and the dash-dotted lines mark the boundaries of the intervals used for the time-resolved spectral analysis of the X-ray data. For a better display of the main flare phase, a cut has been set to the abscissa values such that the tail of the flare is not shown. irreversible changes in the chemical composition of hot plan- ets; see also Chen et al. (2021). The X-ray component of the flare was not considered in these studies as no contemporane- ous data were taken in that energy band for the 1985 flare of AD Leo. However, X-ray photons penetrate deeper into the plan- etary atmosphere and have been shown to drive ionization and chemistry in gaseous exoplanets at layers inaccessible to UV radiation (see Locci et al. 2022, and references therein). AD Leo itself has been reported from a radial velocity study to host a hot-Jupiter planet (Tuomi et al. 2018), but the signal was later attributed to stellar activity (Carleo et al. 2020). y The studies discussed above have pointed out the impor- tance of considering that flares are repetitive events. 1. Introduction However, flare rates are poorly constrained in the crucial high-energy XUV band. While the planet transit search satellites Kepler and TESS have provided high-quality optical light curves for numer- ous flare stars, no instruments are available that are suitable for a systematic monitoring of X-ray and UV flares. This also hampers the full characterization of the dynamics and energy output of flares, which requires their simultaneous detection in different wavebands. That this is a difficult task can be assessed from the study of Namekata et al. (2020), for example, which was dedicated to optical and X-ray monitoring of AD Leo. In 8.5 observation nights, only one small flare was observed jointly in X-rays with NICER (Arzoumanian et al. 2014) and optical instruments. Fig. 1. Light curves of the superflare. Top panel: XMM-Newton EPIC/pn Fig. 1. Light curves of the superflare. Top panel: XMM-Newton EPIC/pn count rate in 0.2−12 keV (red) and in the GOES band (1.5−12.4 keV; green). The binning adapted to the TESS light curve in fast cadence (20 s) is shown in the bottom panel (black circles), where it is overlaid with the time derivative of the X-ray luminosity (open diamonds). The thick dashed vertical line marks the time of the peak of the flare flux in the TESS light curve, and the dash-dotted lines mark the boundaries of the intervals used for the time-resolved spectral analysis of the X-ray data. For a better display of the main flare phase, a cut has been set to the abscissa values such that the tail of the flare is not shown. This article is dedicated to the characterization of a large flare on AD Leo that was observed during a recent pointing of the X-ray satellite XMM-Newton. We detected the optical counter- part of this flare in the TESS light curve. In both wavebands the flare energy is above 1033 erg, the lower bound for the radiative energy release that defines a socalled superflare (Schaefer et al. 2000). for the GOES band (1−8 Å). In the XMM-Newton broad band, it displays a roughly linear (about 340 s long) rise phase, followed by a plateau (lasting about 400 s). The subsequent decay can be described by an exponential followed by a linear phase. 2.1.1. X-ray spectral analysis We divided the flare from the start of its rise (2021-11- 19 05:48:50.816 UTC) to the end of the exponential phase (2021-11-19 07:08:50.816 UTC) into time intervals of about 10 000 EPIC/pn counts each. The 17 time bins obtained this way have different duration, but roughly the same photon statistics. We extracted an EPIC/pn spectrum from each of the 17 intervals and subtracted the out-of-time events. ( p pp ) In Fig. 1 we present the simultaneous X-ray and optical light curves of the superflare together with the time derivative of the X-ray luminosity. In the remainder of this section, we describe how we extracted physical parameters from the X-ray and optical data of the flare. Our goal of constraining the physical conditions in the corona of AD Leo during the flare requires an accurate assess- ment of the underlying quiescent, that is, nonflaring, X-ray emis- sion. To this end, we identified all flare-free parts of the EPIC/pn light curve and combined them into one spectrum. We used this quiescent spectrum as background for the study of the spectral evolution during the X-ray flare. In this way, we obtained a series of flare-only spectra. 1. Introduction We determined the transition between the exponential and the linear phase by fitting a decaying exponential function to the decreas- ing part of the light curve, starting with the first four bins after the end of the peak phase and successively adding data points until the minimum of χ2 red was reached. In this way we determine the exponential decay timescale to τexp = 724 ± 8 s. The subsequent linear phase lasts for the remaining roughly 6 ks until the end of the observation. 2. Analysis of the superflare On November 18/19, 2021, AD Leo was observed for 86 ks with XMM-Newton through Director’s Discretionary Time. Due to the proximity of the bright star γ Leo (V = 1.98 mag), located about 4.8′ southeast of AD Leo, the X-ray pointing was performed in small window mode for the prime instrument EPIC, and the Optical Monitor had to be kept in closed position. The data reduction for EPIC/pn has been carried out with a standard pro- cedure that is described in Appendix A. At the end of the observation, the count rate was still above the preflare level, suggesting that the underlying quiescent corona changed slightly during the flare. Despite this prolonged tail, the initial fast decay of the X-ray light curve indicates a short-duration event, hence likely occurring in a compact coro- nal structure. The roughly one-day-long XMM-Newton observation is fully covered with TESS Sector 45, which covered the time span from November 6 to December 2, 2021. The most evident feature is a huge flare toward the end of the XMM-Newton exposure, which has a counterpart in the TESS data. The optical flare is barely vis- ible in the TESS PDCSAP light curve and in the averaged target pixel file (TPF) available at the Barbara A. Mikulski Archive for Space Telescopes (MAST) Portal because of the high noise level induced by γ Leo. We therefore had to perform a customized data reduction (explained in Appendix B) to reduce the noise. 2.1. X-ray data The time profile of the X-ray flare is shown in the top panel of Fig. 1 for the broad XMM-Newton energy band (0.2−12 keV) and L9, page 2 of 9 B. Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis B. Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis Fig. 2. Time evolution throughout the superflare for parameters derived from the XMM-Newton and TESS data. Upper panel: flaring plasma temperature and EM. Middle panel: flaring plasma abundances and electron density. The abundances of all elements are tied to the Fe abun- dance using the ratios determined for the quiescent state from the RGS spectrum that are listed in Table C.1. Lower panel: thermal energy in the flaring plasma, compared with the total radiated energy in the X-ray and optical bands. The spectrum of each of the 17 individual time slices of the flare was fitted in XSPEC v 12.11.1 (Arnaud 1996) with a two- temperature vapec model. To avoid an excessive number of free parameters, we tied the abundances of all elements (X) to that of iron according to the ratio AX/AFe determined for the quiescent state. The remaining elements considered in vapec (He, Ca, Al, and Ni), which have no significant emission lines in the spectral range examined, were fixed to the solar values. Because low- resolution X-ray spectra are notoriously affected by degeneracies between abundances and emission measure (EM), we derived the abundances of the quiescent emission of AD Leo from the high- resolution RGS spectrum that was extracted from the same time intervals as the quiescent EPIC/pn spectrum. We used the APED database (Smith et al. 2001) and the updated solar abundance table of Asplund et al. (2009). The full EM distribution analy- sis of the RGS data will be explained elsewhere. In Table C.1 we report the abundances obtained from the quiescent RGS spec- trum because their ratios were used to restrict the spectral model for the flare state, as explained above. Free fit parameters for the 17 EPIC/pn flare spectra were thus the two temperatures and two EM and the abundance of Fe. The best-fit results are listed in Table C.2, where we also report the EM-weighted average tem- perature and the total EM for each time interval. 2.1. X-ray data The resulting time evolution of the spectral parameters dur- ing the flare (EM-weighted average temperature T, sum of the EM of the two components EMtot, and iron abundance) is shown in Fig. 2. By definition of the spectral model, the variation of Fe includes the variation of the abundances of the other elements. Figure 2 shows that in the tail of the exponential decay phase, the flare Fe abundance falls below the quiescent value. This likely indicates a change of the underlying quiescent corona that is manifest also in the elevated count rate after the flare (see Fig. 1). This will be investigated in a future work. Fig. 2. Time evolution throughout the superflare for parameters derived from the XMM-Newton and TESS data. Upper panel: flaring plasma temperature and EM. Middle panel: flaring plasma abundances and electron density. The abundances of all elements are tied to the Fe abun- dance using the ratios determined for the quiescent state from the RGS spectrum that are listed in Table C.1. Lower panel: thermal energy in the flaring plasma, compared with the total radiated energy in the X-ray and optical bands. The top panel of Fig. 2 shows that the peak temperature is reached before the peak of the EM, as expected if the enhanced X-ray radiation is caused by a heating event. Second, the tem- perature rapidly drops at nearly constant EM (the plateau at the maximum in the light curve). At the onset of the decrease of the EM, the temperature has already decayed to about half its peak value. Integrating over the fluxes in the 17 time slices, we deter- mined the flare energy. For the GOES band, we found (4.30 ± 0.05) × 1032 erg (see also Table 1), and for the XMM-Newton X-ray band (0.2−12 keV), we found EF,XMM = (1.26 ± 0.01) × 1033 erg. of the flare (log Tpeak = 7.57 ± 0.05 K), we can estimate the loop semi-length. After the first rapid temperature decay at constant EM, the log T vs. log n evolution first displays a joint decrease of both quantities, followed by a minor reheating event. In the first phase of the decay (red points in Fig. 3), the flaring emission is still significantly higher than that of the background corona. 2.1. X-ray data This means that the inferred quantities are not significantly affected by the changes occurring in the underlying corona, which is not accounted for in our analysis. We therefore inferred the slope ζ by fitting only the first decay phase, and we obtained ζ = 0.8±0.6. We note, however, that when the whole decay path is included in the fit (blue points and blue line in Fig. 3), a slope of 0.4 ± 0.2 is obtained, which is comprised within the errors in the value obtained for the reduced time-span. The loop semi- length obtained with the equations of Reale et al. (2004), where the procedure calibrated for the EPIC/pn detector was derived, is then L ≈4 × 109 cm. The equation that yields the loop length was derived by Reale et al. (1997) under a series of assumptions involving the loop geometry (see the beginning of this section) and heating (exponentially decaying). Therefore, the value of L and all other quantities we derive in the following from this parameter are order-of-magnitude estimates. 2.2.2. Flare analysis We validated four flare candidates in the full light curves. They include the X-ray superflare that was clearly detected in the TESS light curve (see the bottom panel of Fig. 1). In Table 1 we provide all relevant flare properties for the superflare determined by our algorithm, namely the duration (∆t, the time between the first and last flare point), the relative peak flare amplitude (Apeak, the continuum flux level subtracted from the flux of the peak), the absolute peak flare amplitude (∆L, multiplying Apeak by the quiescent stellar luminosity), and the equivalent dura- tion (ED, integral under the flare). Following Davenport (2016), we calculated the flare energy, EF, by multiplying the ED with the quiescent stellar luminosity of AD Leo in the TESS band, which we determined from the TESS magnitude of AD Leo (T = 7.036) to be Lqui,T = 2.4 × 1031 erg s−1. This value is consistent within 5% with the luminosity that we obtain when we use AD Leo’s effective temperature and radius and integrate the blackbody function taking the TESS filter transmission into account. Assuming for the optical flare a blackbody emission at a constant temperature of 9000 K (as is typically observed for solar White-Light Flares, WLFs, Kretzschmar 2011), we can constrain the emitting area (assumed to be variable) to match the observed amplitude of the TESS light curve, LF,T(t)/Lqui,T. We found a maximum value for the area of 8.4 × 1019 cm2. Multi- plying this by the flare surface flux yields the bolometric flare g p After estimating the loop volume together with the detailed evolution of its T and EMtot during the flare, we have the unique opportunity of probing the physical conditions of the flaring plasma during the flare evolution. First, we can infer the evolu- tion of the flaring plasma density ne, obtained as √EM/(0.83V) (Fig. 2, middle panel). We can also compute the evolution of the total thermal energy Eth = (3/2)(ne + nH) V kBT of the flar- ing plasma (Fig. 2, lower panel). In addition, the knowledge of plasma density and temperature allows us to probe the pres- sure experienced by the flaring plasma, that is, Pgas = (ne + nH)kBT. 2.1.2. Physical conditions of the X-ray flare Time evolution of the mean temperature and EM associated with the flare. The red line represents a linear least-squares fit to this first phase of the flare decay (when the flaring emission is still much higher than the slightly variable background corona). The blue line is the fit to the whole exponential decay. 2.1.2. Physical conditions of the X-ray flare The time-resolved spectroscopy during the flare decay can be used to determine the semi-length, L, of the flaring loop, making use of the prescription of Reale et al. (1997), who have per- formed hydrodynamic simulations to predict the X-ray spectral signature of decaying flare loops. Assuming that the flaring structure has a constant volume (V) with a uniform cross section (S ) and that the loop has a half-torus shape (hence its volume is V = 2 · S · L), we can infer its semi-length by inspect- ing the evolution of plasma temperature and density during the decay phase. The hypothesis of constant volume implies that the plasma density, n, is proportional to √ EM. The slope, ζ, of the trajectory traced by the flaring plasma in the log T ver- sus log n space, shown in Fig. 3, then allows us to infer the amount of heat released into the loop during the decay. Com- bining this with the observed exponential decay time inferred from the light curve (724 ± 8 s) and the temperature at the peak If the plasma density is known, combining it with the loop length the volume and cross-section of the flaring loop can L9, page 3 of 9 L9, page 3 of 9 A&A 667, L9 (2022) A&A 667 Fig. 3. Time evolution of the mean temperature and EM associated with the flare. The red line represents a linear least-squares fit to this first phase of the flare decay (when the flaring emission is still much higher than the slightly variable background corona). The blue line is the fit to the whole exponential decay. Table 1. Parameters of the superflare extracted from the optical and X- ray light curves. Parameter [unit] TESS XMM-Newton (a) tpeak [BJD-2459537] 0.7444 0.7479 ∆t [min] 6.67 ± 0.67 ≈82.0 Apeak 0.259 ± 0.006 – log ∆L [erg s−1] 30.79 ± 0.03 29.66 ± 0.02 ED [s] 44.9 ± 0.3 – EF [erg] (1.06 ± 0.05) × 1033 (4.30 ± 0.05) × 1032 Notes. (a)Values are for the GOES band from the start of the rise phase to the end of the exponential phase. Notes. (a)Values are for the GOES band from the start of the rise phase to the end of the exponential phase. Notes. (a)Values are for the GOES band from the start of the rise phase to the end of the exponential phase. Fig. 3. 2.2.1. Analysis of the rotation signal A detailed description and a graphical illustration of our period search on AD Leo can be found in Appendix D. We found a rota- tion period of 2.194 ± 0.004, which is consistent with the period found by Hunt-Walker et al. (2012). The half-amplitude of the rotation signal is 0.00217 ± 0.00007. We estimated the spot cov- erage of AD Leo using the relations given by Notsu et al. (2019). With their Eq. (4), which they deduced from Berdyugina (2005), the spot temperature, Tspot, was computed from AD Leo’s effec- tive temperature. With the computed value of Tspot = 2955 K, we found with Eq. (3) of Notsu et al. (2019) a spot filling factor of Aspot/Astar ≈1.0%, where Aspot is the spotted area and Astar is the total surface area of the star. 2.2. Optical data We searched for the rotational signal and for flares in the TESS light curve. Hereby, we followed our previous work, Stelzer et al. (2016) and Raetz et al. (2020), on data from the K2 mission, and Magaudda et al. (2022, period search adapted for TESS data) and Stelzer et al. (2022, flare search on TESS data). be determined from the assumptions on the geometry and the definition of the EM. The electron density can be estimated from the high-resolution RGS spectrum, making use of the ratio of forbidden and intercombination lines of He-like triplets (Gabriel & Jordan 1969). To this end, we extracted an RGS spectrum considering the entire exponential flare duration (i.e., the time span that encompasses all the 17 intervals used for the EPIC/pn time-resolved analysis). Details on the RGS anal- ysis will be provided in a forthcoming paper. For the purpose of the current work, we subtracted the RGS spectrum of the quiescent phase from the RGS flare spectrum to inspect the strongest triplets, those of Ovii and Neix. The significant emis- sion observed in the triplets for this net flare-phase RGS spec- trum confirms that even if their formation temperatures are quite low (∼2 and ∼4 MK respectively), the flaring plasma signifi- cantly contributes to the emission in these lines. The Ovii and Neix triplets indicate electron densities ne of 5+3 −2 × 1010 and 8+10 −7 × 1011 cm−3. To evaluate the geometric loop parameters, we considered the ne value of 8 × 1011 cm−3 because the higher for- mation temperature of Neix suggests that it probes the flaring plasma density better than the cooler Ovii. By averaging the EMtot values of the 17 time intervals we find the total EM of the entire flare, (1.83 ± 0.03) × 1052 cm−3. Combining the elec- tron density with this value and with the loop semi-length, and assuming nH/ne = 0.83 (proper for typical coronal temperatures and chemical compositions), we derive a volume of 3×1028 cm3 and a cross section S ≈5 × 1018 cm2 for the flaring loop. 3. Discussion The energy of the November 2021 flare on AD Leo exceeds the canonical threshold for a superflare, 1033 erg, in both the TESS and the XMM-Newton band. It was stronger by a factor 30 than the largest solar flare observed to date, the Sepember 1859 Carrington event, which was of GOES class X45 (Hudson 2021), while for the AD Leo superflare, we measure a peak flux in the 1−8 Å band of (1.38 ± 0.03) × 10−10 erg cm−2 s−1, cor- responding to an X1445 event on the GOES flux scale. It is a small event when compared with the largest superflares reported from main-sequence stars in the optical band, however (e.g., Schaefer et al. 2000; Maehara et al. 2012). In X-rays, on the other hand, observations of giant flares have mostly been lim- ited to pre-main-sequence objects or interacting binaries (e.g., Preibisch et al. 1995; Grosso et al. 1997; Pandey & Singh 2012; Getman & Feigelson 2021). Fig. 4. Empirical relation of WLF energy and GOES flux for solar flares and power-law fits performed by Namekata et al. (2017) on them using a linear regression method and a linear regression bisector method (solid and dashed lines). The red line is our fit including the AD Leo superflare, which yields in the double logarithmic form (log EWLF = a + b · log FGOES), a slope b = 1.150 ± 0.005, and an axis-offset of a = 34.711 ± 0.007, where the uncertainties are the standard deviations of the fit. g The time profile of the event on AD Leo in November 2021 is similar to the profile of a standard solar flare, where optical emission, associated with the energy deposited by nonthermal high-energy particles in the lower layers of the stellar atmosphere, precedestheX-rayemissionpeakbecauseofthesubsequentchro- mospheric evaporation (see, e.g., Castellanos Durán & Kleint 2020). The brightness peak in the optical is observed about 300 s before the X-ray maximum in the GOES band. The optical light curve is strongly peaked, while the X-ray maximum is a plateau that transitions into an exponential decay, followed by a slow lin- ear decrease. The chromospheric evaporation scenario (see, e.g., Benz 2017) is further corroborated by the increase in density and elemental abundances that is observed during the flare, which also provides new constraints on the metal depletion in coro- nal plasma. 3. Discussion The higher abundance of the flaring (Fe/Fe⊙∼0.9) compared to the quiescent plasma (Fe/Fe⊙∼0.3) clearly proves that the quiescent corona is metal depleted with respect to the chromospheric material, which shows its higher metallicity in the X-rays during the initial phases of the flare. For the first time, we constrained the timescales of coronal metal depletion through the rapid decrease (in a few 100 s) in the elemental abundances after the chromospheric evaporation event. inferred from the optical flare might embrace both the horizon- tal extent and vertical structuring of the flaring loop footpoints. The TESS light curve displays a fairly regular sine-like rota- tional modulation (Fig. D.1). This means that at the epoch of the observation, AD Leo’s photosphere may have been domi- nated by a single spot group. The flare occurred at phase 0.78 of the rotational signal, with phase 0.0 corresponding to the min- imum flux. This means the flare took place when the spotted part of the photosphere was located near the limb. If the flare was indeed spatially connected to the spot, as is typically seen in solar flares (e.g., Toriumi & Wang 2019), we had a lateral view onto the loop structure. We speculate that in such a geometry, the high observed flare area inferred from the TESS data can be accounted for if the optical flare region had a significant vertical extent. Figure 4 shows that the AD Leo superflare is consistent with the extrapolation of the power-law relation between white-light energy and GOES peak flux derived for the solar flare sample of Namekata et al. (2017). The inclusion of AD Leo increases the range of values by several orders of magnitude, and allows, in contrary to Namekata et al.’s study, which was based solely on solar flares, to constrain the power-law relation. p p In absence of data in the radio band, the WLF seen with TESS can be taken as a proxy for the nonthermal component because in the standard flare scenario (e.g., Benz 2017), it is produced by the bombardment of lower atmospheric layers with (nonthermal) electrons from the magnetic reconnection site. We have calculated the evolution of the time derivative of LX, shown as open diamonds in the bottom panel of Fig. 1, from the fluxes measured in the 17 time bins representing the exponential flare phase. 2.2.2. Flare analysis Because this plasma is magnetically confined, the high- est value of Pgas provides a lower limit for the magnetic pressure, Pmag,min = B2/(8π), which in turn implies a minimum magnetic field strength (B) of 500 G and a minimum magnetic energy for the flaring loop of Emag,min = Pmag,min · V = 4 × 1032 erg (also plotted in the lower panel of Fig. 2). L9, page 4 of 9 B. Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis Fig. 4. Empirical relation of WLF energy and GOES flux for solar flares and power-law fits performed by Namekata et al. (2017) on them using a linear regression method and a linear regression bisector method (solid and dashed lines). The red line is our fit including the AD Leo superflare, which yields in the double logarithmic form (log EWLF = a + b · log FGOES), a slope b = 1.150 ± 0.005, and an axis-offset of a = 34.711 ± 0.007, where the uncertainties are the standard deviations of the fit. luminosity (LF,bol = 3.1 × 1031 erg s−1), and integration over the flare light curve gives the bolometric energy radiated by the flare (EF,bol = (5.57 ± 0.03) × 1033 erg). 3. Discussion The behavior follows that of the WLF, demonstrating the presence of the Neupert effect. In the empirical relation of flare duration (tF) and energy (EF), the AD Leo WLF is placed among the smallest Kepler superflares on solar-type (i.e., G-type main-sequence) stars observed with similar cadence, that is, Kepler one-minute light curves (Namekata et al. 2017). The theoretical scaling laws pre- sented by these authors predict the magnetic field strength and coronal loop length for a given tF and EF. For AD Leo, B ∼ 100−200 G is found, which is somewhat lower than the value we measured from the X-ray data (Bmin ≈500 G). This is consistent with the finding by Namekata et al. (2017) who showed by com- parison to resolved solar flares that the scaling laws underpre- dict the field strength. The loop length obtained for the AD Leo superflare from the scaling laws is ≈1010 cm, which is about a factor two larger than the value derived from the X-ray analysis. Th i i l fl h h h l ( The TESS and XMM-Newton data have provided indepen- dent estimates for the surface coverage of the flare footprint. The time-averaged area of the optical flare, determined from the changing amplitude of the TESS light curve, is larger than the X-ray based area by about a factor of seven. A temperature of 25 000 K for the optical flare would reconcile this discrepancy. However, it is likely that the two measurements probe different emitting regions. The X-ray emission, produced by optically thin plasma, provides the cross-section of the coronal part of the loop, while the optical emission originates from the opti- cally thick lower layers of the flaring structure. Hence, the area The energetic particle flux that reaches the planet (see, e.g., Tilley et al. 2019) is of the utmost importance for evaluating the impact of stellar flares on planets. For the Sun-Earth system, cal- ibrations between the flux of protons with energy >10 MeV (Ip) L9, page 5 of 9 L9, page 5 of 9 L9, page 5 of 9 A&A 667, L9 (2022) and the X-ray flux in the GOES band at the flare peak were recently updated by Herbst et al. (2019). We estimate a proton flux of Ip ∼0.1 × 106 cm−2 s−1 sr−1 (from Eq. (4) of Herbst et al. Conf. Ser., 9143, 914320 Robrade, J., & Schmitt, J. H. M. M. 2005, A&A, 435, 1073 abotta, S., Schlecker, M., Chaturvedi, P., et al. 2021, A&A, 653, A Acknowledgements. We wish to thank the anonymous referee. M. Caramazza is supported by the Bundesministerium für Wirtschaft und Energie through the Deutsches Zentrum für Luft- und Raumfahrt e.V. (DLR) under grant number FKZ 50 OR 2105. This research made use of observations obtained with XMM- Newton, an ESA science mission with instruments and contributions directly funded by ESA Member States and NASA. This paper includes data collected by the TESS mission, which are publicly available from the Mikulski Archive for Space Telescopes (MAST). Funding for the TESS mission is provided by NASA’s Science Mission directorate. Schaefer, B. E., King, J. R., & Deliyannis, C. P. 2000, ApJ, 529, 1026 Segura, A., Walkowicz, L. M., Meadows, V., Kasting, J., & Hawley, S. 2010, Astrobiology, 10, 751 Smith, R. K., Brickhouse, N. S., Liedahl, D. A., & Raymond, J. C. 2001, ApJ, 556, L91 Stelzer, B., Damasso, M., Scholz, A., & Matt, S. P. 2016, MNRAS, 463, 1844 Stelzer, B., Bogner, M., Magaudda, E., & Raetz, S. 2022, A&A, 665, A30 Stelzer, B., Damasso, M., Scholz, A., & Matt, S. P. 2016, MNRAS, 463, 1844 Stelzer, B., Bogner, M., Magaudda, E., & Raetz, S. 2022, A&A, 665, A30 g g Tilley, M. A., Segura, A., Meadows, V., Hawley, S., & Davenport, J. 2019, Astrobiology, 19, 64 Toriumi, S., & Wang, H. 2019, Liv. Rev. Sol. Phys., 16, 3 Toriumi, S., & Wang, H. 2019, Liv. Rev. Sol. Phys., 16, 3 Tuomi, M., Jones, H. R. A., Barnes, J. R., et al. 2018, AJ, 15 3. Discussion (2019)) and Ip ∼20.1 × 106 cm−2 s−1 sr−1 (from their Eq. (5)) for the X-ray superflare of AD Leo. An even larger possible range is obtained when the uncertainties of the solar empirical rela- tions are folded in. Herbst et al. (2019) presented several stel- lar flares overlaid on the extrapolated solar relation between Ip and GOES flux, including Kepler superflares, and UV events on some benchmark M dwarfs. However, we stress that none of these events has an actual measurement of the X-ray peak flux, and the GOES class for all of them has been estimated using empirical relations to transform observed fluxes at lower wave- lengths into the X-ray band, which introduces significant addi- tional uncertainties. Arzoumanian, Z., Gendreau, K. C., Baker, C. L., et al. 2014, in Space Telescopes and Instrumentation 2014: Ultraviolet to Gamma Ray, eds. T. Takahashi, J. W. A. den Herder, & M. Bautz, SPIE Conf. Ser., 9144, 914420 Asplund, M., Grevesse, N., Sauval, A. J., & Scott, P. 2009, ARA&A, 47, 481 Benz, A. 2002, Plasma Astrophysics, 2nd edn. (Dordrecht: Kluwer Academ J. W. A. den Herder, & M. Bautz, SPIE Conf. Ser., 9144, 914420 , , , , Asplund, M., Grevesse, N., Sauval, A. J., & Scott, P. 2009, ARA&A, 47, 481 Benz, A. 2002, Plasma Astrophysics, 2nd edn. (Dordrecht: Kluwer Academic Berdyugina, S. V. 2005, Liv. Rev. Sol. Phys., 2, 8 Carleo, I., Malavolta, L., Lanza, A. F., et al. 2020, A&A, 638, A5 Carleo, I., Malavolta, L., Lanza, A. F., et al. 2020, A&A, 638, A5 Castellanos Durán, J. S., & Kleint, L. 2020, ApJ, 904, 96 Chabrier, G. 2001, ApJ, 554, 1274 Davenport, J. R. A. 2016, ApJ, 829, 23 Dressing, C. D., & Charbonneau, D. 2013, ApJ, 767, Gabriel, A. H., & Jordan, C. 1969, MNRAS, 145, 241 , , , , , , Gaia Collaboration 2020, VizieR Online Data Catalog: I/350 Gaia Collaboration 2020, VizieR Online Data Catalog Getman, K. V., & Feigelson, E. D. 2021, ApJ, 916, 32 Gilliland, R. L., & Fisher, R. 1985, PASP, 97, 285 , , , , , , Grosso, N., Montmerle, T., Feigelson, E. D., et al. 1997, Nature, 387, 56 Grosso, N., Montmerle, T., Feigelson, E. D., et al. 1997, Nature, 387, 56 Güdel, M., Audard, M., Smith, K. W., et al. 2002, ApJ, 577, 371 Hawley, S. L., & Pettersen, B. R. 1991, ApJ, 378, 725 Arnaud, K. A. 1996, in Astronomical Data Analysis Software and Systems V, eds. G. H. Jacoby, & J. Barnes, ASP Conf. Ser., 101, 17 4. Conclusions y p Herbst, K., Papaioannou, A., Banjac, S., & Heber, B. 2019, A&A, 621, A67 Houdebine, E. R., Mullan, D. J., Paletou, F., & Gebran, M. 2016, ApJ, 822, 97 Hudson, H. S. 2021, ARA&A, 59 The high-cadence simultaneous coverage throughout the full event in the optical and X-ray band makes this superflare on AD Leo a special calibrator for stellar flare physics and the stel- lar input to exoplanet atmospheres. The exceptionelly good sig- nal at high energies enables evaluating the flare energetics in the GOES band, which provides the rare possibility of quan- tifying the relation of stellar X-ray superflares and the much larger data base of solar flares. The AD Leo flare exceeds the largest solar flare, the Carrington event, by a factor of 30 in peak X-ray flux and by a factor of 14 in energy. Stellar flares with energies up to about 1037 erg have been reported in the lit- erature. However, in most cases, the radiative output in the X- ray band was estimated from empirical relations with optical or UV flare diagnostics, which are subject to order-of-magnitude uncertainties. The parameters inferred in such an indirect way are correspondingly ill determined. With its simultaneous WLF and GOES band measurements, we were able to verify that the energetics of the AD Leo flare, and therefore likely that of other stellar superflares, constitute a scaled-up version of solar flares. We also derived the soft proton flux that is expected to be asso- ciated with the event, which may be helpful for future exoplanet studies. Hunt-Walker, N. M., Hilton, E. J., Kowalski, A. F., Hawley, S. L., & Matthews, J M 2012 PASP 124 545 J. M. 2012, PASP, 124, 545 Johnstone, C. P., Bartel, M., & Güdel, M. 2021, A&A, 649, A96 Kretzschmar, M. 2011, A&A, 530, A84 Locci, D., Petralia, A., Micela, G., et al. 2022, PSJ, 3, 1 occ , ., et a a, ., ce a, G., et a . 0 , SJ, 3, Maehara, H., Shibayama, T., Notsu, S., et al. 2012, Nature, 485, 478 Maehara, H., Shibayama, T., Notsu, S., et al. 2012, Nature, 485, 478 y Magaudda, E., Stelzer, B., Covey, K. R., et al. 2020, A&A, 638, A20 Magaudda, E., Stelzer, B., Raetz, S., et al. 2022, A&A, 661, A29 Namekata, K., Sakaue, T., Watanabe, K., et al. eupert, W. M. 1968, ApJ, 153, L59 Neupert, W. M. 1968, ApJ, 153, L59 Notsu, Y., Maehara, H., Honda, S., et al. 2019, ApJ, 876, 58 Notsu, Y., Maehara, H., Honda, S., et al. 2019, ApJ, 876, 58 Osten, R. A., Drake, S., Tueller, J., et al. 2007, ApJ, 654, 1052 Osten, R. A., Drake, S., Tueller, J., et al. 2007, ApJ, 654, 1052 Osten, R. A., Drake, S., Tueller, J., et al. 2007, ApJ, 654, 1052 , , , , , , , p , , Owen, J. E., Shaikhislamov, I. F., Lammer, H., Fossati, L., & Khodachenko, Owen, J. E., Shaikhislamov, I. F., Lammer, H., Fossati, L., Owen, J. E., Shaikhislamov, I. F., Lammer, H., Fossati, L., & Khodachenko, M. L. 2020, Space Sci. Rev., 216, 129 , , , , , , , , M. L. 2020, Space Sci. Rev., 216, 129 M. L. 2020, Space Sci. Rev., 216, 129 Pandey, J. C., & Singh, K. P. 2012, MNRAS, 419, 1219 Preibisch, T., Neuhaeuser, R., & Alcala, J. M. 1995, A&A, 304, L13 Raetz, S., Stelzer, B., Damasso, M., & Scholz, A. 2020, A&A, 637, A22 Reale, F., Micela, G., Peres, G., Betta, R., & Serio, S. 1997, Mem. Soc. Astron. Ital., 68, 1103 Reale, F., Güdel, M., Peres, G., & Audard, M. 2004, A&A, 416, 733 Ricker, G. R., Winn, J. N., Vanderspek, R., et al. 2014, in Space Telescopes and Instrumentation 2014: Optical, Infrared, and Millimeter Wave, eds. J. Oschmann, M. Jacobus, M. Clampin, G. G. Fazio, & H. A. MacEwen, SPIE Conf. Ser., 9143, 914320 4. Conclusions 2017, ApJ, 851, 91 Namekata, K., Maehara, H., Sasaki, R., et al. 2020, PASJ, 72, 68 Appendix A: XMM-Newton EPIC/pn data extraction from the light-curve extraction. As a second step, we fit a Gaus- sian to the flux in that column and removed the flux of γ Leo from the second most contaminated pixel, the pixel above the most contaminated pixel. With this procedure, we obtained a light curve with a lower noise level, which decreased the stan- dard deviation of the normalized light curve from 0.053 to 0.033. We have analysed the XMM-Newton observation using the Sci- ence Analysis Software (SAS) version 19.1.0 developed for the satellite. By examining the high-energy events (≥10 keV) across the full EPIC/pn detector, which are representative of the over- all background, we verified that the observation was not seri- ously affected by solar particle background. We filtered the data for pixel patterns (0 ≤pattern ≤12), quality flag (flag = 0), and events channels (200 ≤PI ≤15000). Source detec- tion was performed in three energy bands: 0.2 −0.5 keV (S), 0.5 −1.0 keV (M), and 1.0 −2.0 keV (H), after the out-of-time events were removed. For the spectral and temporal analysis, we allowed only pixel patterns with flag ≤4. We defined a circu- lar photon extraction region with a radius of 30′′ centered on the EPIC/pn source position. The background was extracted from an adjacent circular region with a radius of 45′′. The background subtraction of the light curve was carried out with the SAS task epiclccorr, which also corrects for instrumental effects. We then corrected the photon arrival times for barycenter motion using the SAS tool barycen. TESS assigns a quality flag to all measurements. We removed all flagged data points except for those called impulsive outlier and cosmic ray in collateral data (bits 10 and 11) while extracting the light curve. The final light curve has 92839 data points in two segments that are separated by the usual data down- link gap (the so-called low-altitude housekeeping operations, LAHO). We applied a detrending to our cleaned light curve by removing a third-order polynomial from the two light-curve seg- ments individually. Then the light curve was normalized. Fig. B.1. Single frame of the TESS target pixel file with the pipeline mask shown as a dashed red line. The so-called bleed trail of γ Leo contaminates the flux of AD Leo. The graph on the right shows the pro- jection of the pixel column with the strongest contamination (shown as the green line in the TPF). Appendix A: XMM-Newton EPIC/pn data extraction We applied our own light-curve extraction using a customized mask (solid yellow line) and corrected the flux level of the second strongest contaminated pixel (see text). References Tuomi, M., Jones, H. R. A., Barnes, J. R., et al. 2018, AJ, 155, Venot, O., Rocchetto, M., Carl, S., Roshni Hashim, A., & Decin, L. 2016, ApJ, 830, 77 Z h i M & K M 2009 A&A 496 577 Arnaud, K. A. 1996, in Astronomical Data Analysis Software and Systems V, eds. G. H. Jacoby, & J. Barnes, ASP Conf. Ser., 101, 17 Zechmeister, M., & Kürster, M. 2009, A&A, 496, 577 L9, page 6 of 9 B. Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis Appendix B: TESS data reduction Here we show how we obtained a light curve with a lower noise level than the PDCSAP light curve by removing the contribution of γ Leo from the flux in the pixels that we identified as the most contaminated pixels. We analyzed the fast cadence TESS light curve to obtain the best possible time resolution. An evaluation of the individual frames of the TPF showed that the contamination is strongest close to the so-called bleed trail of the saturated star γ Leo, which extends to the pixel col- umn of the TESS pipeline mask for AD Leo. We examined the contamination of the TPF by γ Leo by monitoring the flux level of all pixels in that column for each frame of the TPF. Based on this inspection, we removed the flux of the most contaminated pixel (the lower right pixel of the pipeline mask; see Fig. B.1) Fig. B.1. Single frame of the TESS target pixel file with the pipeline mask shown as a dashed red line. The so-called bleed trail of γ Leo contaminates the flux of AD Leo. The graph on the right shows the pro- jection of the pixel column with the strongest contamination (shown as the green line in the TPF). We applied our own light-curve extraction using a customized mask (solid yellow line) and corrected the flux level of the second strongest contaminated pixel (see text). L9, page 7 of 9 A&A 667, L9 (2022) the RGS spectrum (Table C.1) and the evolution of the spectral parameters throughout the exponential flare phase obtained from the EPIC/pn spectra in time slices of roughly equal photon statis- tics (Table C.2) as explained in Sect. 2.1.1. 1 Fortran Version v2.3.01, released 2011-09-13 by Mathias Zechmeister Appendix C: Parameters from the spectral analysis of XMM-Newton data Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis B. Stelzer et al.: The Great Flare of 2021 November 19 on AD Leonis Appendix C: Parameters from the spectral analysis of XMM-Newton data We provide the elemental abundances for the quiescent corona of AD Leo during the XMM-Newton observation derived from Table C.1. Coronal abundances derived from the quiescent RGS spectrum with respect to the solar photospheric abundances from Asplund et al. (2009) and first ionization potential. Table C.1. Coronal abundances derived from the quiescent RGS spectrum with respect to the solar photospheric abundances from Asplund et al. (2009) and first ionization potential. Element AX/AX,⊙ FIP C 1.03+0.73 −0.13 11.3 N 1.36+0.38 −0.14 14.5 O 0.99+0.27 −0.04 13.6 Ne 1.76+0.60 −0.09 21.6 Mg 0.21+0.13 −0.13 7.6 Si 0.66+0.30 −0.63 8.2 S 0.48+0.33 −0.41 10.4 Ar 0.73+1.12 −0.66 15.8 Fe 0.33+0.11 −0.02 7.9 Table C.2. Best-fit parameters of the time-resolved X-ray spectral analysis of the EPIC/pn data throughout the exponential phase of the flare. Table C.2. Best-fit parameters of the time-resolved X-ray spectral analysis of the EPIC/pn data throughout the expone Table C.2. Best-fit parameters of the time-resolved X-ray spectral analysis of the EPIC/pn data throughout the exponential phase of the flare. int. ta mid log T b 1 (K) log T b 2 (K) log EMb 1 (cm−3) log EMb 2 (cm−3) Fe/Fec ⊙ log T d mean (K) log EMe tot (cm−3) 1 0.745 7.00±0.02 7.58±0.02 51.35±0.08 52.24±0.02 0.84±0.13 7.54±0.05 52.30±0.02 2 0.747 7.02±0.01 7.60±0.02 51.62±0.07 52.59±0.02 0.93±0.12 7.57±0.05 52.63±0.02 3 0.748 7.00±0.02 7.53±0.02 51.69±0.07 52.60±0.02 0.90±0.11 7.50±0.05 52.65±0.02 4 0.749 6.98±0.02 7.47±0.02 51.68±0.06 52.59±0.02 0.84±0.09 7.43±0.05 52.64±0.02 5 0.750 7.00±0.01 7.39±0.02 51.99±0.06 52.56±0.02 0.58±0.06 7.33±0.05 52.66±0.02 6 0.752 6.96±0.01 7.38±0.02 52.02±0.05 52.53±0.02 0.49±0.05 7.31±0.05 52.64±0.02 7 0.753 6.97±0.01 7.36±0.02 52.07±0.05 52.43±0.02 0.40±0.04 7.28±0.06 52.59±0.02 8 0.755 6.94±0.01 7.31±0.02 51.93±0.05 52.33±0.02 0.46±0.05 7.23±0.06 52.47±0.02 9 0.757 6.95±0.01 7.33±0.02 51.90±0.05 52.27±0.02 0.37±0.04 7.24±0.06 52.42±0.02 10 0.760 6.94±0.01 7.31±0.02 51.94±0.05 52.19±0.02 0.27±0.03 7.21±0.06 52.38±0.02 11 0.762 6.94±0.02 7.33±0.02 51.75±0.05 52.12±0.02 0.33±0.04 7.25±0.06 52.27±0.02 12 0.766 6.99±0.01 7.38±0.03 51.88±0.06 51.91±0.03 0.27±0.04 7.24±0.06 52.20±0.03 13 0.770 6.98±0.01 7.34±0.04 51.81±0.06 51.77±0.04 0.26±0.03 7.19±0.07 52.10±0.04 14 0.775 6.99±0.01 7.40±0.05 51.82±0.06 51.70±0.05 0.18±0.03 7.21±0.08 52.07±0.04 15 0.780 6.97±0.02 7.32±0.03 51.73±0.06 51.74±0.04 0.15±0.02 7.18±0.07 52.03±0.04 16 0.786 6.91±0.03 7.22±0.02 51.59±0.06 51.80±0.03 0.16±0.02 7.13±0.07 52.01±0.03 17 0.794 6.94±0.01 7.26±0.02 51.63±0.04 51.69±0.03 0.18±0.02 7.14±0.06 51.96±0.03 Notes. a Time since BJD = 2459537. b Results of the 2T fit. c Fe abundance. d EM-weighted average temperature. e Total EM. meters of the time-resolved X-ray spectral analysis of the EPIC/pn data throughout the exponential phase of the flare. L9, page 8 of 9 B. Appendix D: Period search on the TESS light curve methods. The result of our period search is shown in Fig. D.1. Through visual inspection, we selected the best-fitting period. For the TESS Sector 45 light curve of AD Leo analyzed in this work, the GLS and the sine fitting resulted in periods that are consistent with each other and with values from the literature (see Sect. 2.2.1), while the ACF did not show an unambiguous periodic pattern and hence failed to identify the rotation period (see Fig. D.1). We thus adopted the average of the GLS and sine- fitting period, Prot = 2.194±0.004. The error was calculated with the formulas given by Gilliland & Fisher (1985). Following our previous work that we cited in Sect. 2.2, we used three methods to search for the rotation period of AD Leo: We computed the generalized Lomb-Scargle periodogram (GLS; Zechmeister & Kürster 2009), we determined the autocorrela- tion function (ACF), and finally, we fit the light curve with a sine function. The GLS implementation we used1 can only pro- cess up to 10000 data points. Therefore, we had to bin the light curve by a factor of ten to a resolution of 200 s. The light curve was then phase-folded with the period found with each of the Fig. D.1. Results of the three period-search methods (GLS, ACF, and sine-fitting) for AD Leo observed in TESS Sector 45. The top panels show the light curve phase-folded with the periods obtained with the different methods. The bottom panel shows the GLS periodogram, the ACF, and the original detrended light curve with the sine fit. Fig. D.1. Results of the three period-search methods (GLS, ACF, and sine-fitting) for AD Leo observed in TESS Sector 45. The top panels show the light curve phase-folded with the periods obtained with the different methods. The bottom panel shows the GLS periodogram, the ACF, and the original detrended light curve with the sine fit. L9, page 9 of 9
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Neutrophils as a Therapeutic Target in Cancer
Frontiers in immunology
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Neutrophils as a Therapeutic Target in Cancer Zvi Granot* Department of Developmental Biology and Cancer Research, The Institute for Medical Research Israel-Canada, The Hebrew University-Hadassah Medical School, Jerusalem, Israel Neutrophils are the most abundant population of white blood cells in the human circulation. They are terminally differentiated myeloid cells which were traditionally associated with fighting infections and inflammatory processes. While this perception of neutrophils is still widely prevalent, in the past decade it has become clear that neutrophils also play a critical role in tumor growth and progression. The unique tumor microenvironment, consisting of the non-malignant stroma that surrounds tumor cells, is shaped by numerous cues emanating from both tumor cells and stromal cells which support the growing tumor. Various immune cells, including neutrophils, make up a significant proportion of the tumor stroma. Immune cells exist for the protection of the host against various threats including the detection and elimination of cancerous cells. However, in the context of cancer immune cells are often coerced into a tumor supportive phenotype. This is also the case for neutrophils, which are often described to possess tumor promoting properties and to associate with poorer prognosis. The fact that neutrophils may contribute to tumor growth and progression suggests they may be targets for anti-cancer therapies. This review discusses the various functions neutrophils may play in cancer and the possibility of targeting these functions as a novel mode of immunotherapy. DISTINCT NEUTROPHIL SUBSETS OR A FUNCTIONAL SPECTRUM? *Correspondence: Zvi Granot zvikag@ekmd.huji.ac.il Neutrophils are phagocytes which play a key role in protection of the host against microbial infections as well as taking a critical part in inflammatory processes. In the context of cancer, neutrophils were also shown to play other, non-conventional roles, and may either promote (1, 2) or limit tumor growth (3–5). The conflicting reports regarding neutrophil function in cancer suggest that like other cells of the immune system, neutrophils may be divided into distinct subsets. However, until recently neutrophils were viewed as a homogeneous population of terminally differentiated cells. Still, in a recent study we were able to show that neutrophils in the context of cancer may be divided into 3 subsets—Normal Density Neutrophils (NDN), mature and immature Low Density Neutrophils (LDN) (6). We were able to associate cytotoxic anti-tumor properties with NDN and immunosuppressive pro-tumor properties with LDN (6). In fact, neutrophils subsets distinguishable by their density were found in a wide range of clinical scenarios and are not only associated with cancer (7). Unlike cells of the adaptive immune system, which can be easily defined based on surface expression of unique markers, such surface markers are not well-characterized for neutrophils. In fact, several studies suggested possible markers but these still need to be better Specialty section: This article was submitted to Cancer Immunity and Immunotherapy, a section of the journal Frontiers in Immunology Specialty section: This article was submitted to Cancer Immunity and Immunotherapy, a section of the journal Frontiers in Immunology Received: 30 April 2019 Accepted: 08 July 2019 Published: 19 July 2019 Keywords: neutrophils, cancer, metastasis, tumor microenvironment, therapy Edited by: Jeffrey W. Pollard, University of Edinburgh, United Kingdom Reviewed by: Kawaljit Kaur, University of California, Los Angeles, United States Sanjivan Gautam, National Institutes of Health (NIH), United States *Correspondence: Zvi Granot Edited by: Jeffrey W. Pollard, University of Edinburgh, United Kingdom Reviewed by: Kawaljit Kaur, University of California, Los Angeles, United States Sanjivan Gautam, National Institutes of Health (NIH), United States Reviewed by: Kawaljit Kaur, University of California, Los Angeles, United States Sanjivan Gautam, National Institutes of Health (NIH), United States Reviewed by: Kawaljit Kaur, University of California, Los Angeles, United States Sanjivan Gautam, National Institutes of Health (NIH), United States Keywords: neutrophils, cancer, metastasis, tumor microenvironment, therapy MINI REVIEW MINI REVIEW published: 19 July 2019 doi: 10.3389/fimmu.2019.01710 Tumor Cell Dissemination Metastasis is the final and lethal stage in cancer progression. For tumor cells to metastasize they need to acquire unique features that support the transition from the primary site, their survival in the circulation and the successful metastatic seeding in a distant organ. In this context neutrophils were shown to play various roles to promote the intravasation of tumor cells (MMPs and neutrophil elastase, Figure 1), their survival in the circulation (21), their adherence to the endothelium at the future site of metastasis (priming of the premetastatic niche and NETs) and the process of extravasation (Figure 1). Recently neutrophils were also shown to play a critical role in the awakening of dormant tumor cells and the initiation of metastases growth (22). Targeting of neutrophil function in each of these stages of metastatic dissemination may have significant implications on metastatic progression. This is elegantly demonstrated in a recent study by Albrengues et al. (22) who show that NETs are required for promoting the exit from dormancy and the establishment of marcometastases. This finding is noteworthy since it proposes a clinical scenario where intervention is still possible, i.e., administration of DNAse to eliminate NETs to maintain tumor cells dormant and prolong distant metastasis free survival. Neutrophils are notorious for their tumor promoting properties (1, 2, 10). First and foremost, high neutrophil numbers, otherwise manifested as the Neutrophil to Lymphocyte Ratio (NLR), represent a poor prognostic factor. This was found to be applicable to breast, colon, liver, and many other types of cancer (10). The reasons for the increase in neutrophil numbers are not always fully understood. Some tumors express high levels of colony stimulating factors (i.e., G-CSF and GM-CSF) which may account for the increase in mobilized neutrophils. Other tumors are in a state of smoldering inflammation which may also drive the increase in neutrophil numbers. NLR relates to the numbers of circulating neutrophils, however, the extent of neutrophil infiltration of tumors also appears to have an adverse prognostic value (11). High neutrophil infiltration is associated with poor prognosis, advanced stage cancer and lower recurrence free survival (12–16). Some evidence suggest that high NLR may correlate with the number of tumor associated neutrophils (17). However, this needs to be further evaluated. These observations raise a question regarding the possible targeting of neutrophils as a means for better patient outcome. Citation: Granot Z (2019) Neutrophils as a Therapeutic Target in Cancer. Front. Immunol. 10:1710. doi: 10.3389/fimmu.2019.01710 July 2019 | Volume 10 | Article 1710 1 Frontiers in Immunology | www.frontiersin.org Targeting Neutrophils in Cancer Granot Granot validated (8, 9). Still, neutrophil subsets may be distinguished according to their different physical properties (6) and there is increasing evidence for the existence of various neutrophil subsets which may be defined by their functionality. The lack of validated surface markers, together with their short half- life, makes neutrophils very difficult to study. Further, although specific functionally distinct subsets may be identified, it is still not clear whether these are truly specific subsets or are they simply found on extreme ends of a functional spectrum. That said, the accumulating data regarding neutrophil function in cancer highlights various functional aspects that may be targeted or modified to benefit patients. Following is an account of neutrophil functions and characteristics in the context of cancer and a discussion of how and whether targeting these aspects is feasible or beneficial for cancer therapy. expression of angiogenic factors such as VEGF (18). As such, targeting angiogenesis should serve to limit tumor growth. This indeed turned out to be the case to a limited extent and in certain types of cancer (19). When looking for the source of angiogenic factors in the tumor microenvironment, neutrophils, together with other stromal cells, were shown to provide proangiogenic factors and actively promote tumor angiogenesis. Specifically, neutrophils were shown to provide MMP9, VEGF and HGF (Figure 1). Furthermore, neutrophils were shown to provide factors that circumvent common anti- angiogenic therapies targeting VEGF (20). Taken together, these observations highlight a key role for neutrophils in propagating tumor angiogenesis and suggest that targeting of neutrophil mediated angiogenesis, or targeting of the angiogenic neutrophil subpopulation (if such subpopulation indeed exists), may be used as an anti-angiogenic therapeutic approach. Tumor Cell Dissemination Neutrophils are critical for anti-microbial protection, the option of eliminating neutrophils as a therapeutic strategy cannot be seriously considered since neutropenia is a life threatening condition. A possible alternative would be the depletion of specific neutrophil subpopulations while sparing those subpopulations essential for anti-microbial protection (see above). Unfortunately, although the existence of distinct neutrophil subsets in cancer has been convincingly demonstrated, our understanding of neutrophil subsets and the features making them distinct is still lacking. Specifically, as long as there are no clear markers to distinguish specific subsets, eliminating specific subsets for therapeutic purposes is impossible. Immune Suppression pp The term Myeloid Derived Suppressor Cells (MDSC) encompasses a wide range of myeloid cells which possess immunosuppressive properties. In the context of cancer, these cells have the capacity to suppress cytotoxic T cells and promote immune evasion. The broadness of the MDSC umbrella also covers neutrophils but since it is a relatively well-defined population the term suppressive neutrophils is more accurate. We have previously shown that immunosuppressive neutrophils are propagated to promote the resolution of an inflammatory process. It seems that a similar rationale is employed in the context of cancer—the propagation of immunosuppressive neutrophils serves the resolution of tumor associated inflammation. However, since the tumor is in a continuous state of inflammation that does not resolve, suppressive neutrophils are mobilized excessively to the point where they become the dominant subpopulation of neutrophils. Under these conditions Angiogenesis The angiogenic switch that characterizes a transition toward a more aggressive tumor phenotype is regulated by the July 2019 | Volume 10 | Article 1710 Frontiers in Immunology | www.frontiersin.org 2 Granot Targeting Neutrophils in Cancer Granot FIGURE 1 | Neutrophil functions in cancer and potential therapeutic targets. Neutrophils play various and conflicting roles in cancer. Tumor promoting functions (red arrows) and anti tumor functions (blue arrows) are executed by specific molecular mediators. Tumor promoting propeties: Neutrophils promote tumor cell dissemination by degradation of the ECM at the primary and premetastatic sites and promote tumor cell seeding by deploying NETs. Promotion of angiogenesis is mediated by secretion of VEGF and HGF and the release of angiogenic factors from the ECM by neutrophil derived MMP9. Neutrophil mediate immune supprssion via the secretion of ROS and Arginase 1 to limit T cell dependent anti-tumor immunty. Anti-tumor properties: Neutrophils limit tumor growth and metastatic progression by eliminating tumor cells either directly or via antibody dependent mechanisms. Neutrophils can stimulate anti-tumor adaptive immune by acting as antigen presenting cells, secretion of TNFα, secretion of Elastase and secretion of Cathepsin G (Cath G). FIGURE 1 | Neutrophil functions in cancer and potential therapeutic targets. Neutrophils play various and conflicting roles in cancer. Tumor promoting functions (red arrows) and anti tumor functions (blue arrows) are executed by specific molecular mediators. Tumor promoting propeties: Neutrophils promote tumor cell dissemination by degradation of the ECM at the primary and premetastatic sites and promote tumor cell seeding by deploying NETs. Promotion of angiogenesis is mediated by secretion of VEGF and HGF and the release of angiogenic factors from the ECM by neutrophil derived MMP9. Neutrophil mediate immune supprssion via the secretion of ROS and Arginase 1 to limit T cell dependent anti-tumor immunty. Anti-tumor properties: Neutrophils limit tumor growth and metastatic progression by eliminating tumor cells either directly or via antibody dependent mechanisms. Neutrophils can stimulate anti-tumor adaptive immune by acting as antigen presenting cells, secretion of TNFα, secretion of Elastase and secretion of Cathepsin G (Cath G). requires a high level of specificity. Neutrophils need to be activated, they need to be attracted to tumor cells, they must identify tumor cells as a target, they must form physical contact with tumor cells and must secrete cytotoxic mediators (H2O2) to induce tumor cell apoptosis (Figure 1). Angiogenesis Neutrophil recognition of tumor cells may be mediated either directly [RAGE-Cathepsin G (30)] or in an antibody dependent fashion [ADCC (31)]. In addition, tumor cells must be susceptible to neutrophil cytotoxicity (i.e., express the H2O2-dependent TRPM2 Ca2+ channel) for neutrophils to exert this favorable function (32). It seems that although cytotoxic neutrophils may be detected throughout the course of the disease, neutrophil cytotoxicity is mostly evident in early stages of tumor progression. This is most likely due to suppressive conditions that govern the tumor microenvironment. Since TRPM2 expression in tumor cells varies, not all tumor cells are equally susceptible to neutrophil cytotoxicity. Neutrophil resistant tumor cells should be targeted by other means. However, preventing the transition form HDN to LDN (perhaps by blocking TGFβ activity) should enhance the proportion of anti-tumor neutrophils and may be considered as a possible anti-cancer therapy. Further, the transfusion of cytotoxic neutrophils, although somewhat challenging, is actively being evaluated (Lift BioSciences). the overall neutrophil contribution is pro-tumorigenic. Immunosuppressive neutrophils (often referred to as G- MDSC) contain large amounts of arginase I (Figure 1) which suppresses T cell proliferation through deprivation of L-arginine (23, 24). Immunosuppressive neutrophils were also shown to generate high levels of hydrogen peroxide (Figure 1) and thus block T cell proliferation (25, 26). These observations provide insight into the role played by neutrophils that are maintaining an immunosuppressive tumor microenvironment and highlight their role in facilitating metastatic spread through suppression of adaptive immune components (6, 25, 27). These observations suggest that administration of immunotherapies concomitant with blocking of neutrophil-mediated immunosuppression may further potentiate anti-tumor adaptive immunity. This notion was in fact demonstrated in two separate studies; the first showing that blocking of c-MET in neutrophils improves the efficacy of immunotherapy by limiting the recruitment of immunosuppressive neutrophils (28). The second study, recently published by Veglia et al. (29) shows that FATP2 deficient neutrophils lose their immunosuppressive properties leading to a significant delay in tumor progression. Stimulation of Adaptive Immune Responses Neutrophil Cytotoxicity TGFβ TGFβ is a highly versatile molecule which may act as both tumor suppressor and oncogene. However, when examining the effect it exerts on neutrophil function in cancer it is regarded as pro tumoral. Fridlender et al. (33) were the first to show that TGFβ in the tumor microenvironment acts to block neutrophil cytotoxicity. In this study they also coined the “N1” anti- tumor and “N2” pro-tumor terminology to describe neutrophil function in cancer. Their study showed that TGFβ both blocked the anti-tumor function of neutrophils and restricted their entry into the tumor (33). Later studies provided better insight into the effect of TGFβ on neutrophil function in cancer. First, TGFβ directly blocks the production of H2O2, a key mediator of neutrophil cytotoxicity, by activated neutrophils. Second, TGFβ was found to block the migration of tumor neutrophils toward tumor cells. And third, TGFβ was found to change the ratio between HDN and LDN (see above). Together, these observations demonstrate that TGFβ not only blocks the favorable anti-tumor functions of neutrophils, it also increases the proportion of tumor promoting neutrophils thereby supporting tumor growth. Since TGFβ is abundant at the primary and metastatic tumors, neutrophil cytotoxicity is not evident in these sites but rather the pro-tumor functions are manifested. In contrast, during the early stages of metastatic dissemination, circulating tumor cells arriving to the future site of metastasis are not protected by high levels of TGFβ and are susceptible to neutrophil cytotoxicity. Hence neutrophil cytotoxicity is evident at the time of metastatic seeding and possibly at early stages of tumorigenesis but not in the microenvironment of an established tumor. Neutrophils are essential for host protection against microbial infections and as such cannot be eliminated as a mode of therapy. However, the progress made in recent years highlighting the fact that neutrophils are not a homogeneous population of cells, opens new opportunities for targeting neutrophils as a mode of cancer therapy. Better characterization of neutrophils, their different subsets and distinct functions may serve to specifically deplete harmful populations and enhance neutrophils’ favorable functions. However, taking into account the fast rate of neutrophil replenishment, this strategy will require continuous administration of antibodies. This therapeutic approach is not without risk and previous studies using antibodies to deplete neutrophils show that ultimately the depleting antibodies lose their efficacy. IFNs and are required for proper anti-tumor CD4+ and CD8+ T-cell responses (33–36). In fact, neutrophils were shown to present antigens and provide accessory signals for T cell activation (37, 38). In addition, N1 tumor associated neutrophils were shown to require T-cells for their anti-tumor activity at the primary site, which may indicate possible stimulation of T cells by neutrophils (33). Finally, neutrophils are able to recruit and activate T-cells via secretion of cytokines, including TNFα, Cathepsin G and neutrophil elastase (27) (Figure 1). Type I interferons have an effect on neutrophil function that opposes that of TGFβ. IFNs were first identified as having anti-viral functions and later on were also found to play an anti-tumorigenic role. IFNs mediate an anti-tumor immune response by activating various immune cells (39). On top of modulating the function of lymphocytes and macrophages, IFN-β was found to suppress the expression of proangiogenic factors, such as VEGF and MMP9, thereby limiting tumor growth (40). In addition to modifying the expression of protumorigenic factors, IFN-β enhances the recruitment of neutrophils and their life span in primary tumors (41, 42). Finally, type I IFN activity was found to inhibit neutrophil-mediated priming of a receptive premetastatic niche (43). CONTEXT DEPENDENT NEUTROPHIL FUNCTION Neutrophils may present with either tumor promoting or tumor limiting properties. It is not yet clear whether this is a manifestation of distinct subsets or the extreme ends of a wide functional spectrum. Regardless, neutrophils are the first responders of the immune system and as such are equipped with a wide variety of receptors. This makes neutrophils highly responsive to cues in their microenvironment and may explain why neutrophils function one way at the primary tumor and in a completely different way in the pre-metastatic niche. Indeed, neutrophil function was found to be dramatically modified by factors such as TGFβ and type I interferons. Together, these observations support the notion that neutrophil function in cancer is heavily dictated by the specific microenvironment. More importantly, these data suggest that rather than modifying the function of neutrophils or depleting specific subsets, one may achieve a therapeutic benefit mediated by neutrophils via modulation of the tumor microenvironment. Essentially, blocking TGFβ activity or enhancing IFNs activity at the tumor microenvironment should facilitate neutrophil anti-tumor cytotoxicity and may be considered as a mode of anti-tumor immunotherapy. Neutrophil Cytotoxicity While most of the data regarding neutrophil function in cancer supports a pro-tumorigenic role, neutrophil may also eliminate cancerous cells and limit metastatic seeding. Unlike other neutrophil properties discussed above, neutrophil cytotoxicity The notion that adaptive immunity is the major effector in anti- tumor immune responses is well-accepted. However, there is evidence supporting a role for neutrophils in this respect too. For example, neutrophils were shown to interact with T cells July 2019 | Volume 10 | Article 1710 Frontiers in Immunology | www.frontiersin.org 3 Granot Granot Targeting Neutrophils in Cancer Frontiers in Immunology | www.frontiersin.org REFERENCES 18. Hanahan D, Folkman J. Patterns and emerging mechanisms of the angiogenic switch during tumorigenesis. Cell. (1996) 86:353–64. doi: 10.1016/S0092-8674(00)80108-7 1. Coffelt SB, Wellenstein MD, de Visser KE. Neutrophils in cancer: neutral no more. Nat Rev Cancer. (2016) 16:431–46. doi: 10.1038/nrc.2016.52 1. Coffelt SB, Wellenstein MD, de Visser KE. Neutrophils in cancer: neutral no more. Nat Rev Cancer. (2016) 16:431–46. doi: 10.1038/nrc.2016.52 19. Jain RK. Antiangiogenesis strategies revisited: from starving tumors to alleviating hypoxia. Cancer Cell. (2014) 26:605– 22. doi: 10.1016/j.ccell.2014.10.006 2. Wculek SK, Malanchi I. Neutrophils support lung colonization of metastasis-initiating breast cancer cells. Nature. (2015) 528:413–7. doi: 10.1038/nature16140 20. Shojaei F, Singh M, Thompson JD, Ferrara N. Role of Bv8 in neutrophil- dependent angiogenesis in a transgenic model of cancer progression. Proc Natl Acad Sci USA. (2008) 105:2640–5. doi: 10.1073/pnas.0712185105 3. Granot Z, Jablonska J. Distinct functions of neutrophil in cancer and its regulation. Mediators Inflamm. (2015) 2015:701067. doi: 10.1155/2015/701067 Acad Sci USA. (2008) 105:2640–5. doi: 10.1073/pnas.07121851 21. Szczerba BM, Castro-Giner F, Vetter M, Krol I, Gkountela S, Landin J, et al. Neutrophils escort circulating tumour cells to enable cell cycle progression. Nature. (2019) 566:553–7. doi: 10.1038/s41586-019-0915-y 4. Singhal S, Bhojnagarwala PS, O’Brien S, Moon EK, Garfall AL, Rao AS, et al. Origin and role of a subset of tumor-associated neutrophils with antigen- presenting cell features in early-stage human lung cancer. Cancer Cell. (2016) 30:120–35. doi: 10.1016/j.ccell.2016.06.001 22. Albrengues J, Shields MA, Ng D, Park CG, Ambrico A, Poindexter ME, et al. Neutrophil extracellular traps produced during inflammation awaken dormant cancer cells in mice. Science. (2018) 361:eaao4227. doi: 10.1126/science.aao4227 j 5. Finisguerra V, Di Conza G, Di Matteo M, Serneels J, Costa S, Thompson AA, et al. MET is required for the recruitment of anti-tumoural neutrophils. Nature. (2015) 522:349–53. doi: 10.1038/nature14407 23. Raber P, Ochoa AC, Rodriguez PC. Metabolism of L-arginine by myeloid-derived suppressor cells in cancer: mechanisms of T cell suppression and therapeutic perspectives. Immunol Invest. (2012) 41:614–34. doi: 10.3109/08820139.2012.680634 6. Sagiv JY, Michaeli J, Assi S, Mishalian I, Kisos H, Levy L, et al. Phenotypic diversity and plasticity in circulating neutrophil subpopulations in cancer. Cell Rep. (2015) 10:562–73. doi: 10.1016/j.celrep.2014.12.039 7. Jablonska J, Granot Z. Neutrophil, quo vadis? J Leukoc Biol. (2017) 102:685– 8. doi: 10.1189/jlb.3MR0117-015R 24. Rodriguez PC, Ochoa AC. Arginine regulation by myeloid derived suppressor cells and tolerance in cancer: mechanisms and therapeutic perspectives. Immunol Rev. (2008) 222:180–91. doi: 10.1111/j.1600-065X.2008.00608.x 8. REFERENCES Condamine T, Dominguez GA, Youn JI, Kossenkov AV, Mony S, Alicea- Torres K, et al. Lectin-type oxidized LDL receptor-1 distinguishes population of human polymorphonuclear myeloid-derived suppressor cells in cancer patients. Sci Immunol. (2016) 1:aaf8943. doi: 10.1126/sciimmunol.aaf8943 25. Corzo CA, Cotter MJ, Cheng P, Cheng F, Kusmartsev S, Sotomayor E, et al. Mechanism regulating reactive oxygen species in tumor- induced myeloid-derived suppressor cells. J Immunol. (2009) 182:5693– 701. doi: 10.4049/jimmunol.0900092 9. Marini O, Costa S, Bevilacqua D, Calzetti F, Tamassia N, Spina C, et al. Mature CD10+ and immature CD10−neutrophils present in G-CSF- treated donors display opposite effects on T cells. Blood. (2017) 129:1343– 56. doi: 10.1182/blood-2016-04-713206 26. Gabrilovich DI, Nagaraj S. Myeloid-derived suppressor cells as regulators of the immune system. Nat Rev Immunol. (2009) 9:162–74. doi: 10.1038/nri2506 27. Mishalian I, Bayuh R, Eruslanov E, Michaeli J, Levy L, Zolotarov L, et al. Neutrophils recruit regulatory T-cells into tumors via secretion of CCL17– a new mechanism of impaired antitumor immunity. Int J Cancer. (2014) 135:1178–86. doi: 10.1002/ijc.28770 10. Sionov RV, Fridlender ZG, Granot Z. The multifaceted roles neutrophils play in the tumor microenvironment. Cancer Microenviron. (2015) 8:125– 58. doi: 10.1007/s12307-014-0147-5 11. Gentles AJ, Newman AM, Liu CL, Bratman SV, Feng W, Kim D, et al. The prognostic landscape of genes and infiltrating immune cells across human cancers. Nat Med. (2015) 21:938–45. doi: 10.1038/nm.3909 28. Glodde N, Bald T, van den Boorn-Konijnenberg D, Nakamura K, O’Donnell JS, Szczepanski S, et al. Reactive neutrophil responses dependent on the receptor tyrosine kinase c-MET limit cancer immunotherapy. Immunity. (2017) 47:789–802 e9. doi: 10.1016/j.immuni.2017.09.012 12. Caruso RA, Bellocco R, Pagano M, Bertoli G, Rigoli L, Inferrera C. Prognostic value of intratumoral neutrophils in advanced gastric carcinoma in a high-risk area in northern Italy. Mod Pathol. (2002) 15:831– 7. doi: 10.1097/01.MP.0000020391.98998.6B 29. Veglia F, Tyurin VA, Blasi M, De Leo A, Kossenkov AV, Donthireddy L, et al. Fatty acid transport protein 2 reprograms neutrophils in cancer. Nature. (2019) 569:73–78 doi: 10.1038/s41586-019-1118-2 13. Zhao JJ, Pan K, Wang W, Chen JG, Wu YH, Lv L, et al. The prognostic value of tumor-infiltrating neutrophils in gastric adenocarcinoma after resection. PLoS ONE. (2012) 7:e33655. doi: 10.1371/journal.pone.0033655 30. Sionov RV, Fainsod-Levi T, Zelter T, Polyansky L, Pham CT, Z. G. Neutrophil cathepsin G and tumor cell RAGE facilitate neutrophil anti-tumor cytotoxicity. Oncoimmunology. (2019). doi: 10.1080/2162402X.2019.1624129 14. Reid MD, Basturk O, Thirabanjasak D, Hruban RH, Klimstra DS, Bagci P, et al. TGFβ A different strategy for the manipulation of neutrophil function in cancer is via the modulation of the tumor microenvironment in a fashion that would permit neutrophil anti-tumor functions. Indeed, using small molecules to block TGFβ showed a dramatic effect on tumor growth that was dependent on neutrophils. Furthermore, Novitskiet al. demonstrated that tumor growth and metastatic spread are blocked when using a mouse model of myeloid-specific deletion of TGFβR2 (44). Together, these observations suggest that modifying TGFβ activity in neutrophils in vivo may be sufficient for stimulating a robust anti-tumor response. That said, current therapies targeting TGFβ signaling prove to be toxic and are not tolerated well. A possible alternative for circumventing the toxicity of systemic administration of small molecule July 2019 | Volume 10 | Article 1710 Frontiers in Immunology | www.frontiersin.org 4 Targeting Neutrophils in Cancer Granot AUTHOR CONTRIBUTIONS TGFβ blockers is a more targeted approach. Future therapies using neutrophil specific drug delivery may serve to harness neutrophils toward fighting cancer. Such technology is yet to be developed. The author confirms being the sole contributor of this work and has approved it for publication. REFERENCES Tumor-infiltrating neutrophils in pancreatic neoplasia. Mod Pathol. (2011) 24:1612–9. doi: 10.1038/modpathol.2011.113 31. Sionov RV, Assi S, Gershkovitz M, Sagiv JY, Polyansky L, Mishalian I, et al. Isolation and characterization of neutrophils with anti-tumor properties. J Vis Exp. (2015) 2015:e52933. doi: 10.3791/52933 32. Gershkovitz M, Caspi Y, Fainsod-Levi T, Katz B, Michaeli J, Khawaled S, et al. TRPM2 mediates neutrophil killing of disseminated tumor cells. Cancer Res. (2018) 78:2680–90. doi: 10.1158/0008-5472.CAN-17-3614 15. Ino Y, Yamazaki-Itoh R, Shimada K, Iwasaki M, Kosuge T, Kanai Y, et al. Immune cell infiltration as an indicator of the immune microenvironment of pancreatic cancer. Br J Cancer. (2013) 108:914–23. doi: 10.1038/bjc.2 013.32 33. Fridlender ZG, Sun J, Kim S, Kapoor V, Cheng G, Ling L, et al. Polarization of tumor-associated neutrophil phenotype by TGF-beta: “N1” versus “N2” TAN. Cancer Cell. (2009) 16:183–94. doi: 10.1016/j.ccr.2009.06.017 16. Jensen HK, Donskov F, Marcussen N, Nordsmark M, Lundbeck F, von der Maase H. Presence of intratumoral neutrophils is an independent prognostic factor in localized renal cell carcinoma. J Clin Oncol. (2009) 27:4709– 17. doi: 10.1200/JCO.2008.18.9498 34. Eruslanov EB, Bhojnagarwala PS, Quatromoni JG, Stephen TL, Ranganathan A, Deshpande C, et al. Tumor-associated neutrophils stimulate T cell responses in early-stage human lung cancer. J Clin Invest. (2014) 124:5466– 80. doi: 10.1172/JCI77053 17. Takakura K, Ito Z, Suka M, Kanai T, Matsumoto Y, Odahara S, et al. Comprehensive assessment of the prognosis of pancreatic cancer: peripheral blood neutrophil-lymphocyte ratio and immunohistochemical analyses of the tumour site. Scand J Gastroenterol. (2016) 51:610– 7. doi: 10.3109/00365521.2015.1121515 35. Stoppacciaro A, Melani C, Parenza M, Mastracchio A, Bassi C, Baroni C, et al. Regression of an established tumor genetically modified to release granulocyte colony-stimulating factor requires granulocyte-T cell cooperation July 2019 | Volume 10 | Article 1710 Frontiers in Immunology | www.frontiersin.org 5 Targeting Neutrophils in Cancer Granot Granot and T cell-produced interferon gamma. J Exp Med. (1993) 178:151– 61. doi: 10.1084/jem.178.1.151 neutrophil development through the Ras activator RasGRP1. Blood. (2010) 115:3970–9. doi: 10.1182/blood-2009-10-246967 neutrophil development through the Ras activator RasGRP1. Blood. (2010) 115:3970–9. doi: 10.1182/blood-2009-10-246967 42. Eash KJ, Greenbaum AM, Gopalan PK, Link DC. CXCR2 and CXCR4 antagonistically regulate neutrophil trafficking from murine bone marrow. J Clin Invest. (2010) 120:2423–31. doi: 10.1172/JCI41649 36. Potter NS, Harding CV. Neutrophils process exogenous bacteria via an alternate class I MHC processing pathway for presentation of peptides to T lymphocytes. J Immunol. (2001) 167:2538– 46. doi: 10.4049/jimmunol.167.5.2538 43. Frontiers in Immunology | www.frontiersin.org July 2019 | Volume 10 | Article 1710 REFERENCES Weisel KC, Bautz F, Seitz G, Yildirim S, Kanz L, Mohle R. Modulation of CXC chemokine receptor expression and function in human neutrophils during aging in vitro suggests a role in their clearance from circulation. Mediators Inflamm. (2009) 2009:790174. doi: 10.1155/2009/790174 37. Radsak M, Iking-Konert C, Stegmaier S, Andrassy K, Hansch GM. Polymorphonuclear neutrophils as accessory cells for T-cell activation: major histocompatibility complex class II restricted antigen- dependent induction of T-cell proliferation. Immunology. (2000) 101:521–30. doi: 10.1046/j.1365-2567.2000.00140.x 44. Novitskiy SV, Pickup MW, Chytil A, Polosukhina D, Owens P, Moses HL. Deletion of TGF-beta signaling in myeloid cells enhances their anti-tumorigenic properties. J Leukoc Biol. (2012) 92:641–51. doi: 10.1189/jlb.1211639 38. Reali E, Guerrini R, Moretti S, Spisani S, Lanza F, Tomatis R, et al. Polymorphonuclear neutrophils pulsed with synthetic peptides efficiently activate memory cytotoxic T lymphocytes. J Leukoc Biol. (1996) 60:207– 13. doi: 10.1002/jlb.60.2.207 Conflict of Interest Statement: The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. 39. Chervenick PA, Boggs DR, Marsh JC, Cartwright GE, Wintrobe MM. Quantitative studies of blood and bone marrow neutrophils in normal mice. Am J Physiol. (1968) 215:353–60. doi: 10.1152/ajplegacy.1968.21 5.2.353 Copyright © 2019 Granot. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. 40. Nauseef WM. How human neutrophils kill and degrade microbes: an integrated view. Immunol Rev. (2007) 219:88– 102. doi: 10.1111/j.1600-065X.2007.00550.x 41. de la Luz Sierra M, Sakakibara S, Gasperini P, Salvucci O, Jiang K, McCormick PJ, et al. The transcription factor Gfi1 regulates G-CSF signaling and July 2019 | Volume 10 | Article 1710 Frontiers in Immunology | www.frontiersin.org 6
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Protective Effect of Hesperidin against Cyclophosphamide Hepatotoxicity in Rats
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World Academy of Science, Engineering and Technology International Journal of Biotechnology and Bioengineering Vol:8, No:7, 2014 World Academy of Science, Engineering and Technology International Journal of Biotechnology and Bioengineering Vol:8, No:7, 2014 International Scholarly and Scientific Research & Innovation 8(7) 2014 Protective Effect of Hesperidin against Cyclophosphamide Hepatotoxicity in Rats Authors : Amr A. Fouad, Waleed H. Albuali, Iyad Jresat , , y J Abstract : The protective effect of hesperidin was investigated in rats exposed to liver injury induced by a single intraperitoneal injection of cyclophosphamide (CYP) at a dose of 150 mg kg-1. Hesperidin treatment (100 mg kg-1/day, orally) was applied for seven days, starting five days before CYP administration. Hesperidin significantly decreased the CYP-induced elevations of serum alanine aminotransferase, and hepatic malondialdehyde and myeloperoxidase activity, significantly prevented the depletion of hepatic glutathione peroxidase activity resulted from CYP administration. Also, hesperidin ameliorated the CYP-induced liver tissue injury observed by histopathological examination. In addition, hesperidin decreased the CYP-induced expression of inducible nitric oxide synthase, tumor necrosis factor-α, cyclooxygenase-2, Fas ligand, and caspase-9 in liver tissue. It was concluded that hesperidin may represent a potential candidate to protect against CYP-induced hepatotoxicity. iotechnology and Bioengineering Vol:8, No:7, 2014 waset.org/abstracts/11037 Keywords : hesperidin, cyclophosphamide, liver, rats Keywords : hesperidin, cyclophosphamide, liver, rats Keywords : hesperidin, cyclophosphamide, liver, rats Conference Title : ICABB 2014 : International Conference on Applied Biology and Biotechnology Conference Location : Stockholm, Sweden Conference Dates : July 14-15, 2014 Conference Title : ICABB 2014 : International Conference on Applied Biology and Biotechnology Conference Location : Stockholm, Sweden Conference Dates : July 14-15, 2014 International Scholarly and Scientific Research & Innovation 8(7) 2014 ISNI:0000000091950263 1