metadata
language:
- en
bigbio_language:
- English
license: cc-by-3.0
multilinguality: monolingual
bigbio_license_shortname: CC_BY_3p0_US
pretty_name: CRAFT
homepage: https://github.com/UCDenver-ccp/CRAFT
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
- NAMED_ENTITY_RECOGNITION
- NAMED_ENTITY_DISAMBIGUATION
configs:
- config_name: craft_bigbio_kb
data_files:
- split: train
path: craft_bigbio_kb/train-*
- split: validation
path: craft_bigbio_kb/validation-*
- split: test
path: craft_bigbio_kb/test-*
- config_name: craft_source
data_files:
- split: train
path: craft_source/train-*
- split: validation
path: craft_source/validation-*
- split: test
path: craft_source/test-*
- split: test_cc_0
path: craft_source/test_cc_0-*
- split: test_cc_1
path: craft_source/test_cc_1-*
- split: test_cc_2
path: craft_source/test_cc_2-*
- split: test_bp_0
path: craft_source/test_bp_0-*
- split: test_bp_1
path: craft_source/test_bp_1-*
- split: test_bp_2
path: craft_source/test_bp_2-*
- split: test_bp_3
path: craft_source/test_bp_3-*
- split: test_bp_4
path: craft_source/test_bp_4-*
- split: test_bp_5
path: craft_source/test_bp_5-*
- split: dev_cc
path: craft_source/dev_cc-*
- split: dev_bp
path: craft_source/dev_bp-*
- config_name: default
data_files:
- split: test_cc_0
path: data/test_cc_0-*
- split: test_cc_1
path: data/test_cc_1-*
- split: test_cc_2
path: data/test_cc_2-*
- split: test_bp_0
path: data/test_bp_0-*
dataset_info:
- config_name: craft_bigbio_kb
features:
- name: id
dtype: string
- name: document_id
dtype: string
- name: passages
list:
- name: id
dtype: string
- name: type
dtype: string
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: entities
list:
- name: id
dtype: string
- name: type
dtype: string
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: normalized
list:
- name: db_name
dtype: string
- name: db_id
dtype: string
- name: events
list:
- name: id
dtype: string
- name: type
dtype: string
- name: trigger
struct:
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: arguments
list:
- name: role
dtype: string
- name: ref_id
dtype: string
- name: coreferences
list:
- name: id
dtype: string
- name: entity_ids
sequence: string
- name: relations
list:
- name: id
dtype: string
- name: type
dtype: string
- name: arg1_id
dtype: string
- name: arg2_id
dtype: string
- name: normalized
list:
- name: db_name
dtype: string
- name: db_id
dtype: string
splits:
- name: train
num_bytes: 7255287
num_examples: 60
- name: validation
num_bytes: 1080269
num_examples: 7
- name: test
num_bytes: 3496216
num_examples: 30
download_size: 3977947
dataset_size: 11831772
- config_name: craft_source
features:
- name: pmid
dtype: string
- name: text
dtype: string
- name: annotations
list:
- name: offsets
list:
list: int64
- name: text
list: string
- name: db_name
dtype: string
- name: db_id
dtype: string
splits:
- name: train
num_bytes: 6465252
num_examples: 60
- name: validation
num_bytes: 965865
num_examples: 7
- name: test
num_bytes: 3113779
num_examples: 30
- name: test_cc_0
num_bytes: 392996
num_examples: 10
- name: test_cc_1
num_bytes: 383475
num_examples: 10
- name: test_cc_2
num_bytes: 498933
num_examples: 10
- name: test_bp_2
num_bytes: 236554
num_examples: 5
- name: test_bp_3
num_bytes: 207458
num_examples: 5
- name: test_bp_4
num_bytes: 293156
num_examples: 5
- name: test_bp_5
num_bytes: 277404
num_examples: 5
- name: dev_cc
num_bytes: 383981
num_examples: 7
- name: dev_bp
num_bytes: 459030
num_examples: 7
- name: test_bp_0
num_bytes: 171928
num_examples: 5
- name: test_bp_1
num_bytes: 169900
num_examples: 5
download_size: 5245769
dataset_size: 14019711
- config_name: default
features:
- name: pmid
dtype: string
- name: text
dtype: string
- name: annotations
list:
- name: offsets
list:
list: int64
- name: text
list: string
- name: db_name
dtype: string
- name: db_id
dtype: string
splits:
- name: test_cc_0
num_bytes: 3113779
num_examples: 30
- name: test_cc_1
num_bytes: 3113779
num_examples: 30
- name: test_cc_2
num_bytes: 3113779
num_examples: 30
- name: test_bp_0
num_bytes: 171928
num_examples: 5
download_size: 3345288
dataset_size: 9513265
Dataset Card for CRAFT
Dataset Description
- Homepage: https://github.com/UCDenver-ccp/CRAFT
- Pubmed: True
- Public: True
- Tasks: NER,NED
This dataset contains the CRAFT corpus, a collection of 97 articles from the PubMed Central Open Access subset, each of which has been annotated along a number of different axes spanning structural, coreference, and concept annotation.
Citation Information
@article{bada2012concept,
title={Concept annotation in the CRAFT corpus},
author={Bada, Michael and Eckert, Miriam and Evans, Donald and Garcia, Kristin and Shipley, Krista and Sitnikov, \
Dmitry and Baumgartner, William A and Cohen, K Bretonnel and Verspoor, Karin and Blake, Judith A and others},
journal={BMC bioinformatics},
volume={13},
number={1},
pages={1--20},
year={2012},
publisher={BioMed Central}
}