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- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/estimates/final/predictions.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/freeze/reference_cache.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/level32/selected_indices.npy +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/level32/unphased_evidence_cache.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/psmcplus_level32/inventory.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/psmcplus_level32/store/psmcplus_00000.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/psmcplus_posterior/level32.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/registry/reference.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/registry/selected_indices.npy +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000000.jsonl.gz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000000.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000001.jsonl.gz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000001.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000002.jsonl.gz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/windows/samples/fragments/fragment_00000002.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3b_flat_rowmean/estimates/final/predictions.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3b_flat_rowmean/necast_inputs/level32/selected_indices.npy +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3b_flat_rowmean/necast_inputs/level32/unphased_evidence_cache.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3b_flat_rowmean/necast_inputs/psmcplus_level32/inventory.npz +3 -0
- map_variants/ANCIENT_GROWTH_X10/v3b_flat_rowmean/necast_inputs/psmcplus_level32/store/psmcplus_00000.npz +3 -0
- map_variants/CONST_2K/v1_true/estimates/audit-compare-51974962.json +44 -0
- map_variants/CONST_2K/v1_true/estimates/compare_source_final_51974962.json +238 -0
- map_variants/CONST_2K/v1_true/estimates/final/SCORE_MANIFEST.json +602 -0
- map_variants/CONST_2K/v1_true/estimates/final/predictions.npz +3 -0
- map_variants/CONST_2K/v1_true/estimates/t0_final_51974962.json +102 -0
- map_variants/CONST_2K/v1_true/necast_inputs/COHORT_RECEIPT.json +45 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/architecture_split.jsonl +12 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/open_audit.json +94 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/reference_cache.npz +3 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/report.json +175 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/sample_identities.jsonl +12 -0
- map_variants/CONST_2K/v1_true/necast_inputs/freeze/snapshot.json +1 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/DONE.json +29 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/PLAN.json +230 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/architecture_split.jsonl +11 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/gate.json +38 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/report.json +394 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/sample_identities.jsonl +11 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/sample_metadata.jsonl +11 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/selected_indices.npy +3 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/snapshot.json +1 -0
- map_variants/CONST_2K/v1_true/necast_inputs/level32/unphased_evidence_cache.npz +3 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/inventory.npz +3 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/inventory.receipt.json +11 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/resources_51973560_0.jsonl +4 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/CPU_FEATURE +1 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/NTASK +1 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T181129Z_3621011.json +12 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T181132Z_3621197.json +0 -0
- map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T182234Z_3675161.json +16 -0
map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/estimates/final/predictions.npz
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map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/freeze/reference_cache.npz
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map_variants/ANCIENT_GROWTH_X10/v3_flat_genomewide/necast_inputs/level32/selected_indices.npy
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map_variants/CONST_2K/v1_true/estimates/compare_source_final_51974962.json
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"a": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K",
|
| 3 |
+
"b": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true",
|
| 4 |
+
"cache": {
|
| 5 |
+
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|
| 6 |
+
"all_equal": false,
|
| 7 |
+
"b": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/chain0_level32/unphased_evidence_cache.npz",
|
| 8 |
+
"differ": [
|
| 9 |
+
"coordinates",
|
| 10 |
+
"features",
|
| 11 |
+
"folded_sfs_counts",
|
| 12 |
+
"ld_bin_edges_morgan",
|
| 13 |
+
"ld_effective_individual_sums",
|
| 14 |
+
"ld_features",
|
| 15 |
+
"ld_pair_counts",
|
| 16 |
+
"nw_log10",
|
| 17 |
+
"nw_proxy"
|
| 18 |
+
],
|
| 19 |
+
"fusion_read_members_differ": [
|
| 20 |
+
"folded_sfs_counts",
|
| 21 |
+
"ld_features",
|
| 22 |
+
"nw_log10",
|
| 23 |
+
"nw_proxy"
|
| 24 |
+
],
|
| 25 |
+
"members": {
|
| 26 |
+
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|
| 27 |
+
"equal": true
|
| 28 |
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},
|
| 29 |
+
"context": {
|
| 30 |
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"equal": true
|
| 31 |
+
},
|
| 32 |
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"coordinates": {
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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},
|
| 50 |
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|
| 51 |
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"equal": true
|
| 52 |
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},
|
| 53 |
+
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|
| 54 |
+
"equal": true
|
| 55 |
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},
|
| 56 |
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|
| 57 |
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"equal": true
|
| 58 |
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},
|
| 59 |
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|
| 60 |
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"equal": true
|
| 61 |
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},
|
| 62 |
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"ladder_level": {
|
| 63 |
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"equal": true
|
| 64 |
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},
|
| 65 |
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"ld_bin_edges_morgan": {
|
| 66 |
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|
| 67 |
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"max_abs_diff": 2.168404344971009e-19,
|
| 68 |
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|
| 69 |
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|
| 70 |
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"ld_effective_individual_sums": {
|
| 71 |
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"equal": false,
|
| 72 |
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"max_abs_diff": 446658.0,
|
| 73 |
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"rows_differing": 8
|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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"equal": true
|
| 82 |
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},
|
| 83 |
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|
| 84 |
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"equal": false,
|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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"equal": true
|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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"equal": true
|
| 103 |
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|
| 104 |
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"packed_padded_columns": {
|
| 105 |
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"equal": true
|
| 106 |
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|
| 107 |
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"pair_coalescences_outside": {
|
| 108 |
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"equal": true
|
| 109 |
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|
| 110 |
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"pair_coalescences_per_bin": {
|
| 111 |
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"equal": true
|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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"equal": true
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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},
|
| 122 |
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"sfs_bins_used": {
|
| 123 |
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"equal": true
|
| 124 |
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},
|
| 125 |
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"sfs_projected_n": {
|
| 126 |
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"equal": true
|
| 127 |
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},
|
| 128 |
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"sfs_retained_site_fraction": {
|
| 129 |
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"equal": true
|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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"equal": true
|
| 142 |
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},
|
| 143 |
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"variant_counts": {
|
| 144 |
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"equal": true
|
| 145 |
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}
|
| 146 |
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}
|
| 147 |
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},
|
| 148 |
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"predictions": {
|
| 149 |
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"a": "/ibex/project/c2041/hany0c/bench_h2h_20260915/model/v1/v2_b_CONST_2K/final/predictions.npz",
|
| 150 |
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"all_equal": false,
|
| 151 |
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"b": "/ibex/project/c2041/hany0c/bench_h2h_20260915/model/mapvar/v2_b_CONST_2K__v1_true/final/predictions.npz",
|
| 152 |
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"differ": [
|
| 153 |
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"nw_log10",
|
| 154 |
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"prediction",
|
| 155 |
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|
| 156 |
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],
|
| 157 |
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"members": {
|
| 158 |
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|
| 159 |
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|
| 160 |
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| 161 |
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|
| 162 |
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|
| 163 |
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| 166 |
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|
| 168 |
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| 171 |
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| 172 |
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| 173 |
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| 174 |
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| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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}
|
| 191 |
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}
|
| 192 |
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},
|
| 193 |
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"registry_reference": {
|
| 194 |
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|
| 195 |
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"all_equal": true,
|
| 196 |
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"b": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/registry/reference.npz",
|
| 197 |
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|
| 198 |
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|
| 199 |
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| 200 |
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|
| 201 |
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|
| 202 |
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|
| 203 |
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|
| 204 |
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|
| 205 |
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|
| 206 |
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|
| 207 |
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|
| 208 |
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|
| 209 |
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|
| 210 |
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| 211 |
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| 212 |
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|
| 213 |
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| 214 |
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| 215 |
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|
| 216 |
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}
|
| 217 |
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}
|
| 218 |
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},
|
| 219 |
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"schema": "bench_h2h.map_variants/1#compare",
|
| 220 |
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"sidecar": {
|
| 221 |
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"a": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K/sidecar/chain0_level32.npz",
|
| 222 |
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"all_equal": false,
|
| 223 |
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"b": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/sidecar/chain0_level32.npz",
|
| 224 |
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"differ": [
|
| 225 |
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|
| 226 |
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|
| 227 |
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"members": {
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| 228 |
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| 229 |
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|
| 230 |
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| 234 |
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|
| 235 |
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|
| 236 |
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}
|
| 237 |
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}
|
| 238 |
+
}
|
map_variants/CONST_2K/v1_true/estimates/final/SCORE_MANIFEST.json
ADDED
|
@@ -0,0 +1,602 @@
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
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|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
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|
|
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|
|
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|
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|
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|
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|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
| 1 |
+
{
|
| 2 |
+
"arm": "raw_plus_all_sidecar",
|
| 3 |
+
"cache": {
|
| 4 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/chain0_level32",
|
| 5 |
+
"sha256": {
|
| 6 |
+
"architecture_split": "b2ae231a2454835c92d712c26317a88f30c2e0cb6c8cafa2bae325f67ad4af5d",
|
| 7 |
+
"cache": "06583b7354fa60cc067021d6ac6f78b8ba254adec94e6993cac412b89d533de0",
|
| 8 |
+
"done": "5b567c1eb1c8adda2a507addf3146880135048914726bea11bd204f91e0c8d79",
|
| 9 |
+
"identities": "d77c80f2a96b3fc49abcc503fda281b9e38fb0c7abaaf41c4621a3b5a4529c21",
|
| 10 |
+
"plan": "8216b24778b052c62cd7223b505243d1cf24bcfafd2f84340bf9856afb72b060",
|
| 11 |
+
"report": "32398280b461812c6ed5a81cc6cff4e70672d82fed3354551321acd812748ca3",
|
| 12 |
+
"selected_indices": "03cd6480c6fefdf8ecb1317d77b096c58a6cfd95a8177662c77b5cfd8c5f8380",
|
| 13 |
+
"snapshot": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b"
|
| 14 |
+
},
|
| 15 |
+
"view_identity": {
|
| 16 |
+
"chain": 0,
|
| 17 |
+
"columns_sha256": "4b8e992bf9878de8605a2ad6c0a521ab28125d43d33f1c967bc9fd7a02b6e4db",
|
| 18 |
+
"columns_shape": [
|
| 19 |
+
11,
|
| 20 |
+
32
|
| 21 |
+
],
|
| 22 |
+
"context_log2_haplotypes": 6.0,
|
| 23 |
+
"diploids": 32,
|
| 24 |
+
"nw_proxy_sha256": "3aa55e90f5944259933d363bfa56e442f59c753d19c8c8950a0cd2871026e0ee",
|
| 25 |
+
"row_diploids": 64,
|
| 26 |
+
"schema": "dlcoalsim-fixed-diploid-view-v1",
|
| 27 |
+
"stream_presence_sha256": "d5b26c607d55a215460eda80653fe5b8a5eb095d697ac77f2d62c4db659a8a6e"
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"canonical_ids_sha256": "93d19d414f6af8919c8bd99bae09f0370b64f775fac3c9efff67d8efa1d669cb",
|
| 31 |
+
"cohort_split": "3,8,1",
|
| 32 |
+
"cuda_max_memory_allocated_bytes": 156965888,
|
| 33 |
+
"deploy": {
|
| 34 |
+
"manifest_path": "/ibex/project/c2041/hany0c/deploy_20260913_fixed32/MANIFEST.sha256",
|
| 35 |
+
"manifest_sha256": "659f0427dc079a0bdb2ad3ae8ff8a328e98df6eeeb623532c34cb9a2bcd0b502",
|
| 36 |
+
"path": "/ibex/project/c2041/hany0c/deploy_20260913_fixed32",
|
| 37 |
+
"verified_artifact_count": 34,
|
| 38 |
+
"writable_entries": 0
|
| 39 |
+
},
|
| 40 |
+
"deploy_signatures_checked": {
|
| 41 |
+
"_array_sha256": "training/data.py:1137",
|
| 42 |
+
"_artifact_key": "training/carrier_raw_runner.py:1444",
|
| 43 |
+
"_bind_registry_to_cache": "training/carrier_raw_runner.py:1151",
|
| 44 |
+
"_build_view_evidence_store": "training/carrier_raw_summary_fusion_runner.py:2596",
|
| 45 |
+
"_canonical_sha256": "training/carrier_raw_summary_fusion_experiment.py:165",
|
| 46 |
+
"_deployment_binding": "training/model_resource_gate.py:463",
|
| 47 |
+
"_iter_predictions": "training/carrier_raw_summary_fusion_runner.py:1321",
|
| 48 |
+
"_load_fusion_evidence_cache": "training/carrier_raw_summary_fusion_experiment.py:171",
|
| 49 |
+
"_load_registry": "training/carrier_raw_runner.py:760",
|
| 50 |
+
"_normalise_fusion_evidence": "training/carrier_raw_summary_fusion_experiment.py:367",
|
| 51 |
+
"_seed_everything": "training/data.py:1110",
|
| 52 |
+
"_sha256": "training/data.py:1004",
|
| 53 |
+
"_state_sha256": "training/carrier_raw_runner.py:1224",
|
| 54 |
+
"fixed_view_from_cache": "training/fixed_view.py:212"
|
| 55 |
+
},
|
| 56 |
+
"environment": {
|
| 57 |
+
"cudnn": 90100,
|
| 58 |
+
"device": "cuda",
|
| 59 |
+
"env": {
|
| 60 |
+
"CUBLAS_WORKSPACE_CONFIG": ":4096:8",
|
| 61 |
+
"DLCOAL_COHORT_SPLIT": "3,8,1",
|
| 62 |
+
"DLCOAL_TRAIN_DEPLOY": "/ibex/project/c2041/hany0c/deploy_20260913_fixed32",
|
| 63 |
+
"OMP_NUM_THREADS": "4",
|
| 64 |
+
"PYTHONDONTWRITEBYTECODE": "1"
|
| 65 |
+
},
|
| 66 |
+
"gpu_capability": [
|
| 67 |
+
7,
|
| 68 |
+
0
|
| 69 |
+
],
|
| 70 |
+
"gpu_name": "Tesla V100-SXM2-32GB",
|
| 71 |
+
"hostname": "gpu213-06",
|
| 72 |
+
"numpy": "2.4.6",
|
| 73 |
+
"pid": 187018,
|
| 74 |
+
"platform": "Linux-5.14.0-427.20.1.el9_4.0.1.x86_64-x86_64-with-glibc2.34",
|
| 75 |
+
"python": "3.11.15 | packaged by conda-forge | (main, Jun 11 2026, 03:34:02) [GCC 14.3.0]",
|
| 76 |
+
"slurm_cpus_per_task": "4",
|
| 77 |
+
"slurm_job_id": "51974962",
|
| 78 |
+
"torch": "2.5.1+cu121",
|
| 79 |
+
"torch_cuda_build": "12.1"
|
| 80 |
+
},
|
| 81 |
+
"evidence_store": {
|
| 82 |
+
"bounded_by_development_rows": true,
|
| 83 |
+
"h2d_bytes": 227200,
|
| 84 |
+
"host_bytes": 315260,
|
| 85 |
+
"member_h2d_bytes": {
|
| 86 |
+
"diploid_ibs": 214272,
|
| 87 |
+
"folded_sfs": 512,
|
| 88 |
+
"genotype_ld": 4160,
|
| 89 |
+
"nw_log10": 0,
|
| 90 |
+
"sidecar": 8192,
|
| 91 |
+
"summary_context": 64,
|
| 92 |
+
"target": 0
|
| 93 |
+
},
|
| 94 |
+
"member_requests": {
|
| 95 |
+
"diploid_ibs": 8,
|
| 96 |
+
"folded_sfs": 8,
|
| 97 |
+
"genotype_ld": 8,
|
| 98 |
+
"nw_log10": 0,
|
| 99 |
+
"sidecar": 8,
|
| 100 |
+
"summary_context": 8,
|
| 101 |
+
"target": 0
|
| 102 |
+
},
|
| 103 |
+
"members": [
|
| 104 |
+
"diploid_ibs",
|
| 105 |
+
"folded_sfs",
|
| 106 |
+
"genotype_ld",
|
| 107 |
+
"nw_log10",
|
| 108 |
+
"sidecar",
|
| 109 |
+
"summary_context",
|
| 110 |
+
"target"
|
| 111 |
+
],
|
| 112 |
+
"per_arm_duplicates": 0,
|
| 113 |
+
"row_requests": 8,
|
| 114 |
+
"selection_access_count": 0,
|
| 115 |
+
"selection_rows_read": 0,
|
| 116 |
+
"strategy": "single_persistent_pinned_development_store_v1"
|
| 117 |
+
},
|
| 118 |
+
"fragment_allowlist": {
|
| 119 |
+
"allowlisted": 2,
|
| 120 |
+
"excluded": {
|
| 121 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz": "3 of 4 rows registered"
|
| 122 |
+
},
|
| 123 |
+
"fragments": 3
|
| 124 |
+
},
|
| 125 |
+
"k_aggregation": "none here; K>1 is the bin-wise mean of per-region log10 predictions, done downstream and labelled",
|
| 126 |
+
"loader": {
|
| 127 |
+
"artifact_opens": 2,
|
| 128 |
+
"row_sites_staged": 120601,
|
| 129 |
+
"rows_loaded": 16,
|
| 130 |
+
"rows_staged": 8,
|
| 131 |
+
"sites_staged": 95306,
|
| 132 |
+
"view_site_count_checks": 8
|
| 133 |
+
},
|
| 134 |
+
"loader_budget_fractions": {
|
| 135 |
+
"artifact": 0.16,
|
| 136 |
+
"map": 0.02,
|
| 137 |
+
"map_exposure": 0.015,
|
| 138 |
+
"prefetch": 0.35,
|
| 139 |
+
"segment_plan": 0.08,
|
| 140 |
+
"shift": 0.005,
|
| 141 |
+
"transient": 0.27
|
| 142 |
+
},
|
| 143 |
+
"mode": "benchmark",
|
| 144 |
+
"moments": {
|
| 145 |
+
"array_sha256": {
|
| 146 |
+
"context_mean": "f605076a57180b8d7e5fd9fef808f16a8be1dde74aa2803836686b262d171d67",
|
| 147 |
+
"context_std": "5982f8cdc6ccaafd6028a3980c00d6a995f3422ab84f4774e8f17065450c1f9a",
|
| 148 |
+
"ibs_mean": "91d5c3a60cfccd56184ddee42c0531ea576400b421068db098056a21d3876e48",
|
| 149 |
+
"ibs_std": "507208929d202448bcfb93c205457e4722b14f932a780a9fcc26a5203a246e3e",
|
| 150 |
+
"ld_mean": "66f27af047e76b7a9b08dbe963fa820bd7d409422670c0ce753ae4891c823fee",
|
| 151 |
+
"ld_std": "adb7d81452f0a8904252553c28833230244b4b974c97201bf122bcaed119b90f",
|
| 152 |
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map_variants/CONST_2K/v1_true/estimates/final/predictions.npz
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map_variants/CONST_2K/v1_true/estimates/t0_final_51974962.json
ADDED
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@@ -0,0 +1,102 @@
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|
| 26 |
+
},
|
| 27 |
+
"bitwise[target]": {
|
| 28 |
+
"max_abs_delta": 0.0,
|
| 29 |
+
"pass": true
|
| 30 |
+
},
|
| 31 |
+
"bitwise[view_sites]": {
|
| 32 |
+
"max_abs_delta": 0.0,
|
| 33 |
+
"pass": true
|
| 34 |
+
},
|
| 35 |
+
"distinct_processes": {
|
| 36 |
+
"pass": true,
|
| 37 |
+
"runs": [
|
| 38 |
+
[
|
| 39 |
+
"51974962",
|
| 40 |
+
187018,
|
| 41 |
+
"gpu213-06"
|
| 42 |
+
],
|
| 43 |
+
[
|
| 44 |
+
"51974962",
|
| 45 |
+
187063,
|
| 46 |
+
"gpu213-06"
|
| 47 |
+
]
|
| 48 |
+
]
|
| 49 |
+
},
|
| 50 |
+
"no_open_audit_violations": {
|
| 51 |
+
"pass": true
|
| 52 |
+
},
|
| 53 |
+
"same_gpu_class": {
|
| 54 |
+
"gpus": [
|
| 55 |
+
"Tesla V100-SXM2-32GB",
|
| 56 |
+
"Tesla V100-SXM2-32GB"
|
| 57 |
+
],
|
| 58 |
+
"pass": true
|
| 59 |
+
},
|
| 60 |
+
"same_members": {
|
| 61 |
+
"members": [
|
| 62 |
+
"canonical_id",
|
| 63 |
+
"edges",
|
| 64 |
+
"nw_log10",
|
| 65 |
+
"prediction",
|
| 66 |
+
"registry_index",
|
| 67 |
+
"residual",
|
| 68 |
+
"residual_anchor",
|
| 69 |
+
"row_index",
|
| 70 |
+
"target",
|
| 71 |
+
"view_sites"
|
| 72 |
+
],
|
| 73 |
+
"pass": true
|
| 74 |
+
},
|
| 75 |
+
"same_moments": {
|
| 76 |
+
"pass": true,
|
| 77 |
+
"values": [
|
| 78 |
+
"f486bcf02daa9c34b334b3ae46cd7f4caf56e1669ea30f0221aaaca798bd3d82",
|
| 79 |
+
"f486bcf02daa9c34b334b3ae46cd7f4caf56e1669ea30f0221aaaca798bd3d82"
|
| 80 |
+
]
|
| 81 |
+
},
|
| 82 |
+
"same_plan": {
|
| 83 |
+
"pass": true,
|
| 84 |
+
"values": [
|
| 85 |
+
"3ca82bb9f687729cbfb65b05c31df0ec2bbc45a26a6ba23acd76df6d057797de",
|
| 86 |
+
"3ca82bb9f687729cbfb65b05c31df0ec2bbc45a26a6ba23acd76df6d057797de"
|
| 87 |
+
]
|
| 88 |
+
},
|
| 89 |
+
"same_weights": {
|
| 90 |
+
"pass": true,
|
| 91 |
+
"values": [
|
| 92 |
+
"4b7ea5ee57627a06d87ec4f7babceb3e32f43423071ca0f97901dca27399a070",
|
| 93 |
+
"4b7ea5ee57627a06d87ec4f7babceb3e32f43423071ca0f97901dca27399a070"
|
| 94 |
+
]
|
| 95 |
+
}
|
| 96 |
+
},
|
| 97 |
+
"command": "t0",
|
| 98 |
+
"finished_unix": 1789586201.8364563,
|
| 99 |
+
"passed": true,
|
| 100 |
+
"schema": "bench_h2h-scorer-acceptance-v1",
|
| 101 |
+
"started_unix": 1789586201.8297434
|
| 102 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/COHORT_RECEIPT.json
ADDED
|
@@ -0,0 +1,45 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cohort": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true",
|
| 3 |
+
"dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true",
|
| 4 |
+
"dataset_root_files": {
|
| 5 |
+
"MAPVAR_ROWS.json": "0c73a8bd13b5f74b3fbc39c72539814a6c3e4a37e955553189f1bea98137f6b2",
|
| 6 |
+
"samples/PLAN.json": "996f19dcd75109d1352f02794c5687b9af0cc5c0e99bcdf87f5b5bca37672877"
|
| 7 |
+
},
|
| 8 |
+
"dlcoal_cohort_split": "3,8,1",
|
| 9 |
+
"files": {
|
| 10 |
+
"chain0_level32/DONE.json": "5b567c1eb1c8adda2a507addf3146880135048914726bea11bd204f91e0c8d79",
|
| 11 |
+
"chain0_level32/PLAN.json": "8216b24778b052c62cd7223b505243d1cf24bcfafd2f84340bf9856afb72b060",
|
| 12 |
+
"chain0_level32/architecture_split.jsonl": "b2ae231a2454835c92d712c26317a88f30c2e0cb6c8cafa2bae325f67ad4af5d",
|
| 13 |
+
"chain0_level32/gate.json": "f5e3abdc9fa9a623096d3bc8b28e513c366756bb87214a133778abdce68a4973",
|
| 14 |
+
"chain0_level32/report.json": "32398280b461812c6ed5a81cc6cff4e70672d82fed3354551321acd812748ca3",
|
| 15 |
+
"chain0_level32/sample_identities.jsonl": "d77c80f2a96b3fc49abcc503fda281b9e38fb0c7abaaf41c4621a3b5a4529c21",
|
| 16 |
+
"chain0_level32/sample_metadata.jsonl": "ff8736480fa568672678e5dac46cb0522d4c4bf094f2c93a30e1af1aa9e276ad",
|
| 17 |
+
"chain0_level32/selected_indices.npy": "03cd6480c6fefdf8ecb1317d77b096c58a6cfd95a8177662c77b5cfd8c5f8380",
|
| 18 |
+
"chain0_level32/snapshot.json": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b",
|
| 19 |
+
"chain0_level32/unphased_evidence_cache.npz": "06583b7354fa60cc067021d6ac6f78b8ba254adec94e6993cac412b89d533de0",
|
| 20 |
+
"freeze/architecture_split.jsonl": "8ae5d522f87593ad0249eea5c6bf5be2985d8e799f340beab4cdd4feb6bb8b97",
|
| 21 |
+
"freeze/open_audit.json": "4c395d7f6595dc06c9efa2b77e556c0f4f24f45a0c7f804e0cca7eb9d13fb392",
|
| 22 |
+
"freeze/reference_cache.npz": "b358353046d59cf2c6cf32ade05ea0bea1e0f992bc2d2a22ae2909945c2c9108",
|
| 23 |
+
"freeze/report.json": "08d2f97681aa0e8ae63580ed35047fb986742ef0c93e18358d9a31e8d1010896",
|
| 24 |
+
"freeze/sample_identities.jsonl": "52b0503729d925d26f25b3cbdbba9c59a00916781cc20ef54e7b7a197b21fa02",
|
| 25 |
+
"freeze/snapshot.json": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b",
|
| 26 |
+
"psmcplus_l32/inventory.npz": "d8c29b8139ec9eec4b5b068eef008c70dded3c855cac51f9cef5c733c0cb0250",
|
| 27 |
+
"psmcplus_l32/inventory.receipt.json": "22b4d652a0e7169ffcbc77805578ef61fa0933f714305b14d5f5fcf397c8e212",
|
| 28 |
+
"registry/DONE.json": "fe047f5e7197b9081ce4c6b44093212267d04afac1cde58e19f8148c41a571dc",
|
| 29 |
+
"registry/PLAN.json": "a20042d489de6cb815fd9e8cd9eea651893b042eadbac26918c7d2451cd13825",
|
| 30 |
+
"registry/architecture_split.jsonl": "b2ae231a2454835c92d712c26317a88f30c2e0cb6c8cafa2bae325f67ad4af5d",
|
| 31 |
+
"registry/gate.json": "f5e3abdc9fa9a623096d3bc8b28e513c366756bb87214a133778abdce68a4973",
|
| 32 |
+
"registry/raw_index.jsonl": "61dba55522b19abe3dc42d37e7dc7d8a6e733c0df76d1d7828fa5969cc869676",
|
| 33 |
+
"registry/reference.npz": "1978942b16c33330c22eaedb930cd6dc5ffc5539f5f561f412241364a0dac086",
|
| 34 |
+
"registry/report.json": "8c8b3b78044b9a0df7d87580c4f0cdfbe1a08b6639d2ccec96e4a8a7b6761766",
|
| 35 |
+
"registry/sample_identities.jsonl": "d77c80f2a96b3fc49abcc503fda281b9e38fb0c7abaaf41c4621a3b5a4529c21",
|
| 36 |
+
"registry/selected_indices.npy": "03cd6480c6fefdf8ecb1317d77b096c58a6cfd95a8177662c77b5cfd8c5f8380",
|
| 37 |
+
"registry/snapshot.json": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b"
|
| 38 |
+
},
|
| 39 |
+
"gate_samples": 11,
|
| 40 |
+
"job": "51968247_0",
|
| 41 |
+
"level32_rows": 11,
|
| 42 |
+
"schema": "bench_h2h.map_variants.cohort_receipt/1",
|
| 43 |
+
"source_cohort": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K",
|
| 44 |
+
"variant": "v1_true"
|
| 45 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/architecture_split.jsonl
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "seed": 2078305659, "split": "validation"}
|
| 2 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "seed": 2078313578, "split": "validation"}
|
| 3 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "seed": 2078321497, "split": "validation"}
|
| 4 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "seed": 2078329416, "split": "validation"}
|
| 5 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "seed": 2078337335, "split": "validation"}
|
| 6 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "seed": 2078345254, "split": "validation"}
|
| 7 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "seed": 2078353173, "split": "validation"}
|
| 8 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "seed": 2078361092, "split": "validation"}
|
| 9 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "seed": 2078369011, "split": "train"}
|
| 10 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "seed": 2078376930, "split": "train"}
|
| 11 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "seed": 2078384849, "split": "train"}
|
| 12 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000011", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000011", "seed": 2078392768, "split": "test"}
|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/open_audit.json
ADDED
|
@@ -0,0 +1,94 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"opened": [
|
| 3 |
+
{
|
| 4 |
+
"mode": "r",
|
| 5 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K/freeze/sample_identities.jsonl"
|
| 6 |
+
},
|
| 7 |
+
{
|
| 8 |
+
"mode": "r",
|
| 9 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K/freeze/reference_cache.npz"
|
| 10 |
+
},
|
| 11 |
+
{
|
| 12 |
+
"mode": "r",
|
| 13 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.done.json"
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"mode": "r",
|
| 17 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.done.json"
|
| 18 |
+
},
|
| 19 |
+
{
|
| 20 |
+
"mode": "r",
|
| 21 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.done.json"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"mode": "r",
|
| 25 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.jsonl.gz"
|
| 26 |
+
},
|
| 27 |
+
{
|
| 28 |
+
"mode": "r",
|
| 29 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"mode": "r",
|
| 33 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.jsonl.gz"
|
| 34 |
+
},
|
| 35 |
+
{
|
| 36 |
+
"mode": "r",
|
| 37 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz"
|
| 38 |
+
},
|
| 39 |
+
{
|
| 40 |
+
"mode": "r",
|
| 41 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.jsonl.gz"
|
| 42 |
+
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|
| 43 |
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{
|
| 44 |
+
"mode": "r",
|
| 45 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz"
|
| 46 |
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|
| 47 |
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{
|
| 48 |
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"mode": "r",
|
| 49 |
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|
| 50 |
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|
| 51 |
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{
|
| 52 |
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"mode": "r",
|
| 53 |
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"path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl"
|
| 54 |
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|
| 55 |
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|
| 56 |
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"mode": "w",
|
| 57 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/reference_cache.npz"
|
| 58 |
+
},
|
| 59 |
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{
|
| 60 |
+
"mode": "w",
|
| 61 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/snapshot.json"
|
| 62 |
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},
|
| 63 |
+
{
|
| 64 |
+
"mode": "w",
|
| 65 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl"
|
| 66 |
+
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|
| 67 |
+
{
|
| 68 |
+
"mode": "w",
|
| 69 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/architecture_split.jsonl"
|
| 70 |
+
},
|
| 71 |
+
{
|
| 72 |
+
"mode": "r",
|
| 73 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/reference_cache.npz"
|
| 74 |
+
},
|
| 75 |
+
{
|
| 76 |
+
"mode": "r",
|
| 77 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl"
|
| 78 |
+
},
|
| 79 |
+
{
|
| 80 |
+
"mode": "r",
|
| 81 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/architecture_split.jsonl"
|
| 82 |
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|
| 83 |
+
{
|
| 84 |
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"mode": "w",
|
| 85 |
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/report.json"
|
| 86 |
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|
| 87 |
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|
| 88 |
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"purposes": [
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
+
"refused": []
|
| 94 |
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|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/reference_cache.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:b358353046d59cf2c6cf32ade05ea0bea1e0f992bc2d2a22ae2909945c2c9108
|
| 3 |
+
size 4274
|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/report.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
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|
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|
| 156 |
+
"ea47d9c807d37d042eea8a36802353c24e0f9153ce501db041d9dd8954448e38:00000007"
|
| 157 |
+
],
|
| 158 |
+
"source_freeze": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_b_CONST_2K/freeze",
|
| 159 |
+
"source_mirror": {
|
| 160 |
+
"files": 10,
|
| 161 |
+
"linked": 10,
|
| 162 |
+
"logical_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true",
|
| 163 |
+
"physical_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true",
|
| 164 |
+
"reused": 0,
|
| 165 |
+
"source_root_map": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true=/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true"
|
| 166 |
+
},
|
| 167 |
+
"source_plan_sha256": "ea47d9c807d37d042eea8a36802353c24e0f9153ce501db041d9dd8954448e38",
|
| 168 |
+
"split_assignment": "copied from the source freeze report (benchmark=validation, decoys train,train,train,test)",
|
| 169 |
+
"tool_sha256": {
|
| 170 |
+
"bench_h2h/map_variants.py": "fb105eb12aacbaae7da733e624fc3865e23427c23f05003395f7581d1b8d0fc5",
|
| 171 |
+
"bench_h2h/paths.py": "81e16ef760fa58f9f2c1b198a5251a3a117d16788bd56ee203c826bcfb2ceed2",
|
| 172 |
+
"bench_h2h/real/dataset_root.py": "4db57250a9596fb1935111f23b5ec5ab01aca471231d6ce607429d9ccef6855d"
|
| 173 |
+
},
|
| 174 |
+
"variant": "v1_true"
|
| 175 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/sample_identities.jsonl
ADDED
|
@@ -0,0 +1,12 @@
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|
| 1 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000000", "sample_index": 0, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078305659, "slice_chrom": "chr10", "split": "validation"}
|
| 2 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000001", "sample_index": 1, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078313578, "slice_chrom": "chr15", "split": "validation"}
|
| 3 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000002", "sample_index": 2, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078321497, "slice_chrom": "chr11", "split": "validation"}
|
| 4 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000003", "sample_index": 3, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078329416, "slice_chrom": "chr15", "split": "validation"}
|
| 5 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000004", "sample_index": 4, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078337335, "slice_chrom": "chr6", "split": "validation"}
|
| 6 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000005", "sample_index": 5, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078345254, "slice_chrom": "chr13", "split": "validation"}
|
| 7 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000006", "sample_index": 6, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078353173, "slice_chrom": "chr5", "split": "validation"}
|
| 8 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000007", "sample_index": 7, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078361092, "slice_chrom": "chr22", "split": "validation"}
|
| 9 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000008", "sample_index": 8, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078369011, "slice_chrom": "chr20", "split": "train"}
|
| 10 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000009", "sample_index": 9, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078376930, "slice_chrom": "chr22", "split": "train"}
|
| 11 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000010", "sample_index": 10, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078384849, "slice_chrom": "chr10", "split": "train"}
|
| 12 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000011", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000011", "sample_index": 11, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078392768, "slice_chrom": "chr5", "split": "test"}
|
map_variants/CONST_2K/v1_true/necast_inputs/freeze/snapshot.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"tasks": [{"artifact": {"artifact_index": 0, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.jsonl.gz", "metadata_sha256": "3ab1e30b389ae49f3969f86861eb5ec72fe59c219a511012c9889c80e511547d", "metadata_size_bytes": 3333, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "npz_sha256": "f84594af80477db8ee74b378ce991af5f03751c469c5924e20d0cd0f6152eac0", "npz_size_bytes": 2302709, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.done.json", "receipt_sha256": "ce76eb1f7be09d870fb31f7f667df3814b2239775f7b0c744cf44c9ec085a8e4", "shard_index": 0, "start": 0}, "row_indices": [0, 1, 2, 3]}, {"artifact": {"artifact_index": 1, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.jsonl.gz", "metadata_sha256": "b21586e2b6ad2e8ea8cea70c186469c6398e5ddf43008ac2d37fa05a576bf22c", "metadata_size_bytes": 3420, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "npz_sha256": "c2352a82133bf936fb9915fe41cb4364cae69ce7077cbafb4773ffda21c8fa6b", "npz_size_bytes": 2515390, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.done.json", "receipt_sha256": "7ce58d040b618edb1fab4b5893bbbff04397739ebc8799596d2df5a123cf2596", "shard_index": 0, "start": 4}, "row_indices": [0, 1, 2, 3]}, {"artifact": {"artifact_index": 2, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.jsonl.gz", "metadata_sha256": "92fc33830b551368a07e1ad70d584829d2cdd044d7c94eb6b32b0b975cdefb2d", "metadata_size_bytes": 3383, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz", "npz_sha256": "b2a28d917a5fc8ad3a5af20fdb704e415c18229dbc150490eb977714bfdb5ee4", "npz_size_bytes": 2412263, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.done.json", "receipt_sha256": "b756ebd8360aa4b7ccc300e1364bcaf5c84471a6aa17e03f48e73a69011e38d3", "shard_index": 0, "start": 8}, "row_indices": [0, 1, 2, 3]}]}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/DONE.json
ADDED
|
@@ -0,0 +1,29 @@
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|
| 1 |
+
{
|
| 2 |
+
"architecture_split": "architecture_split.jsonl",
|
| 3 |
+
"architecture_split_sha256": "b2ae231a2454835c92d712c26317a88f30c2e0cb6c8cafa2bae325f67ad4af5d",
|
| 4 |
+
"cache": "unphased_evidence_cache.npz",
|
| 5 |
+
"cache_contract": "dlcoalsim-unphased-evidence-v1",
|
| 6 |
+
"cache_sha256": "06583b7354fa60cc067021d6ac6f78b8ba254adec94e6993cac412b89d533de0",
|
| 7 |
+
"identities": "sample_identities.jsonl",
|
| 8 |
+
"identities_sha256": "d77c80f2a96b3fc49abcc503fda281b9e38fb0c7abaaf41c4621a3b5a4529c21",
|
| 9 |
+
"ladder_chain": 0,
|
| 10 |
+
"ladder_level": 32,
|
| 11 |
+
"report": "report.json",
|
| 12 |
+
"report_sha256": "32398280b461812c6ed5a81cc6cff4e70672d82fed3354551321acd812748ca3",
|
| 13 |
+
"row_order_sha256": "e09ed049e8c816cc8e4a409f7ce72b619a39fab53a6c09e88115683a4bb992fa",
|
| 14 |
+
"sample_metadata": "sample_metadata.jsonl",
|
| 15 |
+
"sample_metadata_sha256": "ff8736480fa568672678e5dac46cb0522d4c4bf094f2c93a30e1af1aa9e276ad",
|
| 16 |
+
"schema": "dlcoalsim-unphased-evidence-v1",
|
| 17 |
+
"schema_version": 1,
|
| 18 |
+
"selected_indices": "selected_indices.npy",
|
| 19 |
+
"selected_indices_sha256": "03cd6480c6fefdf8ecb1317d77b096c58a6cfd95a8177662c77b5cfd8c5f8380",
|
| 20 |
+
"snapshot": "snapshot.json",
|
| 21 |
+
"snapshot_sha256": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b",
|
| 22 |
+
"status": "complete",
|
| 23 |
+
"stream_presence_counts": {
|
| 24 |
+
"ibs": 11,
|
| 25 |
+
"ld": 11,
|
| 26 |
+
"nw": 11,
|
| 27 |
+
"sfs": 11
|
| 28 |
+
}
|
| 29 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/PLAN.json
ADDED
|
@@ -0,0 +1,230 @@
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|
|
|
| 1 |
+
{
|
| 2 |
+
"architecture_split_counts": {
|
| 3 |
+
"0": 3,
|
| 4 |
+
"1": 8,
|
| 5 |
+
"2": 0
|
| 6 |
+
},
|
| 7 |
+
"builder_deployment": null,
|
| 8 |
+
"cache_contract": "dlcoalsim-unphased-evidence-v1",
|
| 9 |
+
"cache_contract_version": 1,
|
| 10 |
+
"command": [
|
| 11 |
+
"/ibex/project/c2041/hany0c/deploy_20260913_fixed32/scripts/build_level_cache.py",
|
| 12 |
+
"--chain",
|
| 13 |
+
"0",
|
| 14 |
+
"--level",
|
| 15 |
+
"32",
|
| 16 |
+
"--snapshot",
|
| 17 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/snapshot.json",
|
| 18 |
+
"--reference-cache",
|
| 19 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/reference_cache.npz",
|
| 20 |
+
"--identities",
|
| 21 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl",
|
| 22 |
+
"--architecture-split",
|
| 23 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/architecture_split.jsonl",
|
| 24 |
+
"--out-dir",
|
| 25 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/chain0_level32",
|
| 26 |
+
"--gate-samples",
|
| 27 |
+
"11",
|
| 28 |
+
"--workers",
|
| 29 |
+
"4",
|
| 30 |
+
"--source-root-map",
|
| 31 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true=/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true"
|
| 32 |
+
],
|
| 33 |
+
"development_eligible_samples": 11,
|
| 34 |
+
"feature_semantics": {
|
| 35 |
+
"diploid_state_schema": "diploid-six-state-adjacent-haplotypes-v1",
|
| 36 |
+
"folded_sfs": "missing-aware hypergeometric projection to n=32 then 16-bin fold",
|
| 37 |
+
"genotype_ld_schema": "registered-site-lag-genotype-dose-r2-v1",
|
| 38 |
+
"genotype_ld_site_lags": [
|
| 39 |
+
1,
|
| 40 |
+
2,
|
| 41 |
+
4,
|
| 42 |
+
8,
|
| 43 |
+
16,
|
| 44 |
+
32,
|
| 45 |
+
64
|
| 46 |
+
],
|
| 47 |
+
"ibs_channels": [
|
| 48 |
+
"ibs0_gap_complete",
|
| 49 |
+
"ibs0_gap_sequence_censored",
|
| 50 |
+
"ibs0_gap_missing_censored",
|
| 51 |
+
"ibs0_gap_double_censored",
|
| 52 |
+
"ibs0_contiguous_run",
|
| 53 |
+
"ibs1_contiguous_run",
|
| 54 |
+
"ibs2_contiguous_run"
|
| 55 |
+
],
|
| 56 |
+
"ibs_schema": "diploid-ibs012-missing-cut-log2bp-dyadic-v1",
|
| 57 |
+
"output": "direct 64-bin residual target only"
|
| 58 |
+
},
|
| 59 |
+
"gate_provenance": {
|
| 60 |
+
"eligible_development_samples": 11,
|
| 61 |
+
"logical_root_counts": {
|
| 62 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true": 11
|
| 63 |
+
},
|
| 64 |
+
"requested_samples": 11,
|
| 65 |
+
"schema": "dlcoal-ibs-tract-extreme-balanced-gate-v1",
|
| 66 |
+
"sealed_selection_samples_excluded_before_ranking": 1,
|
| 67 |
+
"selected_rows": [
|
| 68 |
+
0,
|
| 69 |
+
1,
|
| 70 |
+
2,
|
| 71 |
+
3,
|
| 72 |
+
4,
|
| 73 |
+
5,
|
| 74 |
+
6,
|
| 75 |
+
7,
|
| 76 |
+
8,
|
| 77 |
+
9,
|
| 78 |
+
10
|
| 79 |
+
],
|
| 80 |
+
"selected_variant_counts": [
|
| 81 |
+
11087,
|
| 82 |
+
13555,
|
| 83 |
+
13610,
|
| 84 |
+
13161,
|
| 85 |
+
10955,
|
| 86 |
+
19223,
|
| 87 |
+
17345,
|
| 88 |
+
21665,
|
| 89 |
+
16983,
|
| 90 |
+
11966,
|
| 91 |
+
16829
|
| 92 |
+
],
|
| 93 |
+
"selection": "balance logical dataset_root; alternate smallest/largest exact variant count; canonical_id tie break; publish reference row order",
|
| 94 |
+
"variant_count_max": 21665,
|
| 95 |
+
"variant_count_min": 10955
|
| 96 |
+
},
|
| 97 |
+
"ibs_bin_edges_bp": [
|
| 98 |
+
0,
|
| 99 |
+
1,
|
| 100 |
+
2,
|
| 101 |
+
4,
|
| 102 |
+
8,
|
| 103 |
+
16,
|
| 104 |
+
32,
|
| 105 |
+
64,
|
| 106 |
+
128,
|
| 107 |
+
256,
|
| 108 |
+
512,
|
| 109 |
+
1024,
|
| 110 |
+
2048,
|
| 111 |
+
4096,
|
| 112 |
+
8192,
|
| 113 |
+
16384,
|
| 114 |
+
32768,
|
| 115 |
+
65536,
|
| 116 |
+
131072,
|
| 117 |
+
262144,
|
| 118 |
+
524288,
|
| 119 |
+
1048576,
|
| 120 |
+
2097152,
|
| 121 |
+
4194304,
|
| 122 |
+
8388608,
|
| 123 |
+
16777216,
|
| 124 |
+
33554432,
|
| 125 |
+
9223372036854775807
|
| 126 |
+
],
|
| 127 |
+
"ladder_chain": 0,
|
| 128 |
+
"ladder_level": 32,
|
| 129 |
+
"ladder_salt_module": "training.diploid_ladder",
|
| 130 |
+
"ladder_semantics": {
|
| 131 |
+
"absent_anchor_policy": "a subset with no segregating site fails the build unless --neutral-nw-proxy names a substitute; a zero anchor becomes nw_log10 == -307.65",
|
| 132 |
+
"callable_leaf_policy": "recomputed from the level's own states; never a C(L,2)/C(32,2) rescale of the top level, which disagrees with the level's own spectrum whenever calls are missing",
|
| 133 |
+
"column_order": "permutation order as drawn; never sorted, because a sorted prefix is a valid ladder over a different set of diploids",
|
| 134 |
+
"packed_streams_read": "repack_diploid_subset(bits, columns, missing)",
|
| 135 |
+
"pairwise_streams_read": "states[:, columns]",
|
| 136 |
+
"roundtrip_verified_rows": "every row",
|
| 137 |
+
"sfs_bins_used": 16,
|
| 138 |
+
"sfs_policy": "compute_level_sfs_evidence is told the level: padded packed slots are masked as missing, the projection width is min(2L, 32) rather than always 32, and Watterson's constant comes from 2L rather than the padded packed width",
|
| 139 |
+
"sfs_projected_n": 32,
|
| 140 |
+
"stream_names": [
|
| 141 |
+
"sfs",
|
| 142 |
+
"ld",
|
| 143 |
+
"ibs",
|
| 144 |
+
"nw"
|
| 145 |
+
],
|
| 146 |
+
"structurally_absent_streams": [],
|
| 147 |
+
"subset_source": "training.diploid_ladder.level_columns",
|
| 148 |
+
"window_pyramid_policy": "features/context are normalised by 2L, the rung's own haplotype count, not by the padded packed width: the padded slots decode as homozygous reference and contribute nothing to an allele count, so dividing by them would shrink every window statistic at levels 1 and 2 and would state the wrong sample size in the context channel"
|
| 149 |
+
},
|
| 150 |
+
"ld_bin_edges_morgan": [
|
| 151 |
+
1e-06,
|
| 152 |
+
1.4677992676220705e-06,
|
| 153 |
+
2.1544346900318822e-06,
|
| 154 |
+
3.162277660168379e-06,
|
| 155 |
+
4.641588833612782e-06,
|
| 156 |
+
6.8129206905796085e-06,
|
| 157 |
+
1e-05,
|
| 158 |
+
1.4677992676220675e-05,
|
| 159 |
+
2.1544346900318823e-05,
|
| 160 |
+
3.1622776601683795e-05,
|
| 161 |
+
4.641588833612772e-05,
|
| 162 |
+
6.812920690579608e-05,
|
| 163 |
+
0.0001,
|
| 164 |
+
0.0001467799267622069,
|
| 165 |
+
0.00021544346900318823,
|
| 166 |
+
0.00031622776601683794,
|
| 167 |
+
0.00046415888336127773,
|
| 168 |
+
0.0006812920690579609,
|
| 169 |
+
0.001,
|
| 170 |
+
0.0014677992676220691,
|
| 171 |
+
0.002154434690031882,
|
| 172 |
+
0.0031622776601683794,
|
| 173 |
+
0.004641588833612777,
|
| 174 |
+
0.006812920690579608,
|
| 175 |
+
0.01
|
| 176 |
+
],
|
| 177 |
+
"ld_block_variants": 65536,
|
| 178 |
+
"ld_feature_names": [
|
| 179 |
+
"mean_genotype_dosage_r2",
|
| 180 |
+
"mean_inverse_effective_individuals",
|
| 181 |
+
"mean_null_centered_r2",
|
| 182 |
+
"mean_effective_individual_fraction",
|
| 183 |
+
"log1p_eligible_site_pair_count"
|
| 184 |
+
],
|
| 185 |
+
"min_retained_site_fraction": 0.0,
|
| 186 |
+
"neutral_nw_proxy": null,
|
| 187 |
+
"output_architecture_split_sha256": "b2ae231a2454835c92d712c26317a88f30c2e0cb6c8cafa2bae325f67ad4af5d",
|
| 188 |
+
"output_identities_sha256": "d77c80f2a96b3fc49abcc503fda281b9e38fb0c7abaaf41c4621a3b5a4529c21",
|
| 189 |
+
"packed_decoded_columns": 32,
|
| 190 |
+
"packed_padded_columns": 0,
|
| 191 |
+
"physical_source_root_map": {
|
| 192 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true"
|
| 193 |
+
},
|
| 194 |
+
"reference_architecture_split": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/architecture_split.jsonl",
|
| 195 |
+
"reference_architecture_split_sha256": "8ae5d522f87593ad0249eea5c6bf5be2985d8e799f340beab4cdd4feb6bb8b97",
|
| 196 |
+
"reference_cache": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/reference_cache.npz",
|
| 197 |
+
"reference_cache_access_policy": "sha256_only_never_numpy_loaded",
|
| 198 |
+
"reference_cache_sha256": "b358353046d59cf2c6cf32ade05ea0bea1e0f992bc2d2a22ae2909945c2c9108",
|
| 199 |
+
"region_counts": [
|
| 200 |
+
1,
|
| 201 |
+
2,
|
| 202 |
+
4,
|
| 203 |
+
8,
|
| 204 |
+
16
|
| 205 |
+
],
|
| 206 |
+
"region_offsets": [
|
| 207 |
+
0,
|
| 208 |
+
1,
|
| 209 |
+
3,
|
| 210 |
+
7,
|
| 211 |
+
15,
|
| 212 |
+
31
|
| 213 |
+
],
|
| 214 |
+
"row_order_sha256": "e09ed049e8c816cc8e4a409f7ce72b619a39fab53a6c09e88115683a4bb992fa",
|
| 215 |
+
"row_selection": "none: every eligible development row is present",
|
| 216 |
+
"schema": "dlcoalsim-unphased-evidence-v1",
|
| 217 |
+
"schema_version": 1,
|
| 218 |
+
"sealed_selection_samples": 1,
|
| 219 |
+
"selected_indices_sha256": "03cd6480c6fefdf8ecb1317d77b096c58a6cfd95a8177662c77b5cfd8c5f8380",
|
| 220 |
+
"selected_samples": 11,
|
| 221 |
+
"selection_seal": "architecture code 2 is removed before row-specific variant, raw, target, or metadata task construction",
|
| 222 |
+
"snapshot": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/snapshot.json",
|
| 223 |
+
"snapshot_sha256": "33ef5f176723adfaccc751e8407181a965215a41d77418eb3063c1065376724b",
|
| 224 |
+
"source_identities": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl",
|
| 225 |
+
"source_identities_sha256": "52b0503729d925d26f25b3cbdbba9c59a00916781cc20ef54e7b7a197b21fa02",
|
| 226 |
+
"source_samples": 12,
|
| 227 |
+
"status": "extracting",
|
| 228 |
+
"verify_source_sha256": true,
|
| 229 |
+
"workers": 4
|
| 230 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/architecture_split.jsonl
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "seed": 2078305659, "split": "validation"}
|
| 2 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "seed": 2078313578, "split": "validation"}
|
| 3 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "seed": 2078321497, "split": "validation"}
|
| 4 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "seed": 2078329416, "split": "validation"}
|
| 5 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "seed": 2078337335, "split": "validation"}
|
| 6 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "seed": 2078345254, "split": "validation"}
|
| 7 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "seed": 2078353173, "split": "validation"}
|
| 8 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "seed": 2078361092, "split": "validation"}
|
| 9 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "seed": 2078369011, "split": "train"}
|
| 10 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "seed": 2078376930, "split": "train"}
|
| 11 |
+
{"architecture_group": "bench:166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "seed": 2078384849, "split": "train"}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/gate.json
ADDED
|
@@ -0,0 +1,38 @@
|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"eligible_development_samples": 11,
|
| 3 |
+
"logical_root_counts": {
|
| 4 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true": 11
|
| 5 |
+
},
|
| 6 |
+
"requested_samples": 11,
|
| 7 |
+
"schema": "dlcoal-ibs-tract-extreme-balanced-gate-v1",
|
| 8 |
+
"sealed_selection_samples_excluded_before_ranking": 1,
|
| 9 |
+
"selected_rows": [
|
| 10 |
+
0,
|
| 11 |
+
1,
|
| 12 |
+
2,
|
| 13 |
+
3,
|
| 14 |
+
4,
|
| 15 |
+
5,
|
| 16 |
+
6,
|
| 17 |
+
7,
|
| 18 |
+
8,
|
| 19 |
+
9,
|
| 20 |
+
10
|
| 21 |
+
],
|
| 22 |
+
"selected_variant_counts": [
|
| 23 |
+
11087,
|
| 24 |
+
13555,
|
| 25 |
+
13610,
|
| 26 |
+
13161,
|
| 27 |
+
10955,
|
| 28 |
+
19223,
|
| 29 |
+
17345,
|
| 30 |
+
21665,
|
| 31 |
+
16983,
|
| 32 |
+
11966,
|
| 33 |
+
16829
|
| 34 |
+
],
|
| 35 |
+
"selection": "balance logical dataset_root; alternate smallest/largest exact variant count; canonical_id tie break; publish reference row order",
|
| 36 |
+
"variant_count_max": 21665,
|
| 37 |
+
"variant_count_min": 10955
|
| 38 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/report.json
ADDED
|
@@ -0,0 +1,394 @@
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|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architecture_split_counts": {
|
| 3 |
+
"0": 3,
|
| 4 |
+
"1": 8,
|
| 5 |
+
"2": 0
|
| 6 |
+
},
|
| 7 |
+
"array_shapes": {
|
| 8 |
+
"architecture_split": [
|
| 9 |
+
11
|
| 10 |
+
],
|
| 11 |
+
"context": [
|
| 12 |
+
11,
|
| 13 |
+
2
|
| 14 |
+
],
|
| 15 |
+
"coordinates": [
|
| 16 |
+
11,
|
| 17 |
+
1874,
|
| 18 |
+
3
|
| 19 |
+
],
|
| 20 |
+
"features": [
|
| 21 |
+
11,
|
| 22 |
+
6,
|
| 23 |
+
1874
|
| 24 |
+
],
|
| 25 |
+
"folded_sfs_counts": [
|
| 26 |
+
11,
|
| 27 |
+
16
|
| 28 |
+
],
|
| 29 |
+
"ibs_bin_edges_bp": [
|
| 30 |
+
28
|
| 31 |
+
],
|
| 32 |
+
"ibs_callable_pair_site_counts_leaf": [
|
| 33 |
+
11,
|
| 34 |
+
16
|
| 35 |
+
],
|
| 36 |
+
"ibs_counts": [
|
| 37 |
+
11,
|
| 38 |
+
7,
|
| 39 |
+
31,
|
| 40 |
+
27
|
| 41 |
+
],
|
| 42 |
+
"ladder_chain": [
|
| 43 |
+
1
|
| 44 |
+
],
|
| 45 |
+
"ladder_columns": [
|
| 46 |
+
11,
|
| 47 |
+
32
|
| 48 |
+
],
|
| 49 |
+
"ladder_level": [
|
| 50 |
+
1
|
| 51 |
+
],
|
| 52 |
+
"ld_bin_edges_morgan": [
|
| 53 |
+
25
|
| 54 |
+
],
|
| 55 |
+
"ld_effective_individual_sums": [
|
| 56 |
+
11,
|
| 57 |
+
26
|
| 58 |
+
],
|
| 59 |
+
"ld_features": [
|
| 60 |
+
11,
|
| 61 |
+
5,
|
| 62 |
+
26
|
| 63 |
+
],
|
| 64 |
+
"ld_lags": [
|
| 65 |
+
7
|
| 66 |
+
],
|
| 67 |
+
"ld_pair_counts": [
|
| 68 |
+
11,
|
| 69 |
+
26
|
| 70 |
+
],
|
| 71 |
+
"missing_call_counts": [
|
| 72 |
+
11
|
| 73 |
+
],
|
| 74 |
+
"nw_log10": [
|
| 75 |
+
11
|
| 76 |
+
],
|
| 77 |
+
"nw_proxy": [
|
| 78 |
+
11
|
| 79 |
+
],
|
| 80 |
+
"packed_decoded_columns": [
|
| 81 |
+
1
|
| 82 |
+
],
|
| 83 |
+
"packed_padded_columns": [
|
| 84 |
+
1
|
| 85 |
+
],
|
| 86 |
+
"pair_coalescences_outside": [
|
| 87 |
+
11,
|
| 88 |
+
2
|
| 89 |
+
],
|
| 90 |
+
"pair_coalescences_per_bin": [
|
| 91 |
+
11,
|
| 92 |
+
64
|
| 93 |
+
],
|
| 94 |
+
"seeds": [
|
| 95 |
+
11
|
| 96 |
+
],
|
| 97 |
+
"selected_indices": [
|
| 98 |
+
11
|
| 99 |
+
],
|
| 100 |
+
"sequence_length_bp": [
|
| 101 |
+
11
|
| 102 |
+
],
|
| 103 |
+
"sfs_bins_used": [
|
| 104 |
+
1
|
| 105 |
+
],
|
| 106 |
+
"sfs_projected_n": [
|
| 107 |
+
1
|
| 108 |
+
],
|
| 109 |
+
"sfs_retained_site_fraction": [
|
| 110 |
+
11
|
| 111 |
+
],
|
| 112 |
+
"split": [
|
| 113 |
+
11
|
| 114 |
+
],
|
| 115 |
+
"stream_names": [
|
| 116 |
+
4
|
| 117 |
+
],
|
| 118 |
+
"stream_presence": [
|
| 119 |
+
11,
|
| 120 |
+
4
|
| 121 |
+
],
|
| 122 |
+
"targets": [
|
| 123 |
+
11,
|
| 124 |
+
64
|
| 125 |
+
],
|
| 126 |
+
"variant_counts": [
|
| 127 |
+
11
|
| 128 |
+
]
|
| 129 |
+
},
|
| 130 |
+
"builder_deployment": null,
|
| 131 |
+
"cache": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/chain0_level32/unphased_evidence_cache.npz",
|
| 132 |
+
"cache_contract": "dlcoalsim-unphased-evidence-v1",
|
| 133 |
+
"cache_contract_version": 1,
|
| 134 |
+
"cache_sha256": "06583b7354fa60cc067021d6ac6f78b8ba254adec94e6993cac412b89d533de0",
|
| 135 |
+
"cache_size_bytes": 1292608,
|
| 136 |
+
"command": [
|
| 137 |
+
"/ibex/project/c2041/hany0c/deploy_20260913_fixed32/scripts/build_level_cache.py",
|
| 138 |
+
"--chain",
|
| 139 |
+
"0",
|
| 140 |
+
"--level",
|
| 141 |
+
"32",
|
| 142 |
+
"--snapshot",
|
| 143 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/snapshot.json",
|
| 144 |
+
"--reference-cache",
|
| 145 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/reference_cache.npz",
|
| 146 |
+
"--identities",
|
| 147 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl",
|
| 148 |
+
"--architecture-split",
|
| 149 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/architecture_split.jsonl",
|
| 150 |
+
"--out-dir",
|
| 151 |
+
"/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/chain0_level32",
|
| 152 |
+
"--gate-samples",
|
| 153 |
+
"11",
|
| 154 |
+
"--workers",
|
| 155 |
+
"4",
|
| 156 |
+
"--source-root-map",
|
| 157 |
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}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/sample_identities.jsonl
ADDED
|
@@ -0,0 +1,11 @@
|
|
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|
|
|
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|
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|
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|
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| 1 |
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|
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|
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000002", "sample_index": 2, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078321497, "slice_chrom": "chr11", "split": "validation"}
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000003", "sample_index": 3, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078329416, "slice_chrom": "chr15", "split": "validation"}
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000004", "sample_index": 4, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078337335, "slice_chrom": "chr6", "split": "validation"}
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000005", "sample_index": 5, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078345254, "slice_chrom": "chr13", "split": "validation"}
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| 7 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000006", "sample_index": 6, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078353173, "slice_chrom": "chr5", "split": "validation"}
|
| 8 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000007", "sample_index": 7, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078361092, "slice_chrom": "chr22", "split": "validation"}
|
| 9 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000008", "sample_index": 8, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078369011, "slice_chrom": "chr20", "split": "train"}
|
| 10 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000009", "sample_index": 9, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078376930, "slice_chrom": "chr22", "split": "train"}
|
| 11 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "demography_type": "stdpopsim", "literature_model_id": "BENCH_CONST_2K", "map_mode": "empirical_slice", "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "sample_id": "sim_00000010", "sample_index": 10, "scenario_key": "stdpopsim|empirical_slice|mild_noise", "seed": 2078384849, "slice_chrom": "chr10", "split": "train"}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/sample_metadata.jsonl
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
| 1 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000000", "extraction_seconds": 0.8189502730965614, "ladder_chain": 0, "ladder_columns": [39, 36, 24, 55, 28, 14, 34, 4, 30, 50, 35, 49, 33, 21, 53, 22, 45, 58, 42, 31, 6, 20, 25, 38, 27, 60, 62, 5, 3, 32, 11, 51], "ladder_level": 32, "missing_call_count": 3185, "output_index": 0, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "source_local_row": 0, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 11087}
|
| 2 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000001", "extraction_seconds": 0.8378784786909819, "ladder_chain": 0, "ladder_columns": [16, 57, 22, 43, 38, 41, 39, 2, 35, 59, 51, 30, 36, 32, 40, 26, 20, 45, 47, 33, 6, 37, 34, 23, 1, 4, 58, 52, 14, 7, 49, 62], "ladder_level": 32, "missing_call_count": 12356, "output_index": 1, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "source_local_row": 1, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 13555}
|
| 3 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000002", "extraction_seconds": 0.8287850134074688, "ladder_chain": 0, "ladder_columns": [23, 43, 14, 34, 49, 22, 60, 41, 53, 4, 28, 56, 37, 7, 11, 20, 51, 62, 30, 6, 18, 1, 36, 2, 8, 38, 16, 29, 47, 54, 42, 15], "ladder_level": 32, "missing_call_count": 4073, "output_index": 2, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "source_local_row": 2, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 13610}
|
| 4 |
+
{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000003", "extraction_seconds": 0.8316313475370407, "ladder_chain": 0, "ladder_columns": [35, 55, 48, 11, 30, 28, 53, 15, 31, 60, 40, 52, 61, 57, 0, 13, 14, 32, 6, 54, 37, 17, 9, 47, 23, 42, 22, 12, 36, 24, 50, 51], "ladder_level": 32, "missing_call_count": 9466, "output_index": 3, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "source_local_row": 3, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 13161}
|
| 5 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000004", "extraction_seconds": 0.805386982858181, "ladder_chain": 0, "ladder_columns": [22, 50, 14, 5, 54, 46, 8, 19, 52, 6, 2, 4, 25, 9, 17, 57, 44, 62, 29, 18, 26, 40, 28, 34, 23, 49, 35, 41, 37, 13, 48, 12], "ladder_level": 32, "missing_call_count": 10817, "output_index": 4, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "source_local_row": 0, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 10955}
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| 6 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000005", "extraction_seconds": 0.8880857396870852, "ladder_chain": 0, "ladder_columns": [8, 63, 60, 62, 34, 10, 2, 33, 23, 9, 28, 49, 0, 14, 30, 3, 13, 41, 43, 58, 6, 29, 39, 4, 46, 45, 48, 38, 31, 11, 1, 24], "ladder_level": 32, "missing_call_count": 13897, "output_index": 5, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "source_local_row": 1, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 19223}
|
| 7 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000006", "extraction_seconds": 0.8470631074160337, "ladder_chain": 0, "ladder_columns": [60, 11, 20, 15, 58, 4, 9, 46, 38, 27, 16, 32, 25, 29, 56, 37, 40, 48, 57, 0, 50, 30, 5, 33, 47, 6, 61, 23, 8, 43, 22, 34], "ladder_level": 32, "missing_call_count": 6767, "output_index": 6, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "source_local_row": 2, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 17345}
|
| 8 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000007", "extraction_seconds": 1.0010161269456148, "ladder_chain": 0, "ladder_columns": [31, 20, 55, 28, 11, 48, 57, 6, 42, 23, 21, 26, 58, 10, 1, 45, 37, 54, 49, 47, 62, 34, 33, 61, 59, 43, 40, 12, 8, 7, 25, 50], "ladder_level": 32, "missing_call_count": 27804, "output_index": 7, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "source_local_row": 3, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 21665}
|
| 9 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000008", "extraction_seconds": 0.9378855470567942, "ladder_chain": 0, "ladder_columns": [26, 43, 3, 12, 0, 18, 60, 63, 56, 41, 10, 21, 33, 45, 11, 44, 48, 37, 53, 34, 62, 46, 52, 20, 22, 50, 17, 42, 6, 14, 55, 51], "ladder_level": 32, "missing_call_count": 29613, "output_index": 8, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz", "source_local_row": 0, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 16983}
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| 10 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000009", "extraction_seconds": 0.8508580289781094, "ladder_chain": 0, "ladder_columns": [1, 25, 35, 51, 0, 7, 49, 28, 38, 40, 17, 6, 29, 34, 12, 11, 3, 37, 41, 20, 48, 45, 10, 42, 39, 53, 16, 9, 22, 31, 57, 54], "ladder_level": 32, "missing_call_count": 21776, "output_index": 9, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz", "source_local_row": 1, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 11966}
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| 11 |
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{"canonical_id": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb:00000010", "extraction_seconds": 0.8517938442528248, "ladder_chain": 0, "ladder_columns": [4, 46, 21, 28, 57, 56, 30, 48, 16, 32, 23, 59, 36, 1, 45, 40, 20, 54, 17, 18, 9, 37, 8, 25, 31, 11, 27, 0, 24, 22, 7, 42], "ladder_level": 32, "missing_call_count": 13741, "output_index": 10, "sequence_length_bp": 30000000, "sfs_retained_site_fraction": 1.0, "source_artifact": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/.mirrors/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz", "source_local_row": 2, "stream_presence": {"ibs": 1, "ld": 1, "nw": 1, "sfs": 1}, "variant_count": 16829}
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map_variants/CONST_2K/v1_true/necast_inputs/level32/selected_indices.npy
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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size 216
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map_variants/CONST_2K/v1_true/necast_inputs/level32/snapshot.json
ADDED
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@@ -0,0 +1 @@
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|
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|
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|
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| 1 |
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{"tasks": [{"artifact": {"artifact_index": 0, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.jsonl.gz", "metadata_sha256": "3ab1e30b389ae49f3969f86861eb5ec72fe59c219a511012c9889c80e511547d", "metadata_size_bytes": 3333, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.npz", "npz_sha256": "f84594af80477db8ee74b378ce991af5f03751c469c5924e20d0cd0f6152eac0", "npz_size_bytes": 2302709, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000000.done.json", "receipt_sha256": "ce76eb1f7be09d870fb31f7f667df3814b2239775f7b0c744cf44c9ec085a8e4", "shard_index": 0, "start": 0}, "row_indices": [0, 1, 2, 3]}, {"artifact": {"artifact_index": 1, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.jsonl.gz", "metadata_sha256": "b21586e2b6ad2e8ea8cea70c186469c6398e5ddf43008ac2d37fa05a576bf22c", "metadata_size_bytes": 3420, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.npz", "npz_sha256": "c2352a82133bf936fb9915fe41cb4364cae69ce7077cbafb4773ffda21c8fa6b", "npz_size_bytes": 2515390, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000001.done.json", "receipt_sha256": "7ce58d040b618edb1fab4b5893bbbff04397739ebc8799596d2df5a123cf2596", "shard_index": 0, "start": 4}, "row_indices": [0, 1, 2, 3]}, {"artifact": {"artifact_index": 2, "artifact_kind": "fragment", "dataset_root": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true", "metadata_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.jsonl.gz", "metadata_sha256": "92fc33830b551368a07e1ad70d584829d2cdd044d7c94eb6b32b0b975cdefb2d", "metadata_size_bytes": 3383, "n_samples": 4, "npz_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.npz", "npz_sha256": "b2a28d917a5fc8ad3a5af20fdb704e415c18229dbc150490eb977714bfdb5ee4", "npz_size_bytes": 2412263, "plan_sha256": "166e57fc8a2e06a64257d8a22ba6c3cca17548e7999ddadb4fd01c12d3913fbb", "receipt_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments/fragment_00000002.done.json", "receipt_sha256": "b756ebd8360aa4b7ccc300e1364bcaf5c84471a6aa17e03f48e73a69011e38d3", "shard_index": 0, "start": 8}, "row_indices": [0, 1, 2, 3]}]}
|
map_variants/CONST_2K/v1_true/necast_inputs/level32/unphased_evidence_cache.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1292608
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/inventory.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:d8c29b8139ec9eec4b5b068eef008c70dded3c855cac51f9cef5c733c0cb0250
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| 3 |
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size 6774
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/inventory.receipt.json
ADDED
|
@@ -0,0 +1,11 @@
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|
| 1 |
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{
|
| 2 |
+
"frag_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments",
|
| 3 |
+
"fragments": 3,
|
| 4 |
+
"identities": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/freeze/sample_identities.jsonl",
|
| 5 |
+
"identities_sha256": "52b0503729d925d26f25b3cbdbba9c59a00916781cc20ef54e7b7a197b21fa02",
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| 6 |
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"inventory": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/inventory.npz",
|
| 7 |
+
"inventory_sha256": "d8c29b8139ec9eec4b5b068eef008c70dded3c855cac51f9cef5c733c0cb0250",
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"rows": 12,
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| 10 |
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|
| 11 |
+
}
|
map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/resources_51973560_0.jsonl
ADDED
|
@@ -0,0 +1,4 @@
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| 1 |
+
{"cgroup": "/sys/fs/cgroup/system.slice/slurmstepd.scope/job_51973560", "cgroup_cpu_system_s": 0.578332, "cgroup_cpu_usage_s": 2.40871, "cgroup_cpu_user_s": 1.830378, "cgroup_memory_current_bytes": 27033600, "cgroup_memory_peak_bytes": 100925440, "cpu_affinity": "17", "cpu_affinity_count": 1, "cpu_count_node": 192, "cpu_model": "AMD EPYC 9655 96-Core Processor", "cpu_models_distinct": ["AMD EPYC 9655 96-Core Processor"], "gpu_count": 0, "gpu_model": null, "gpus": null, "host": "cn604-18", "kind": "job_start", "label": "psmcplus:l32:v2_b_CONST_2K__v1_true", "omp_num_threads": "1", "python": "3.9.18", "schema": "bench_h2h.resources.v1", "slurm_array_job_id": "51973560", "slurm_array_task_id": "0", "slurm_cpus_on_node": "1", "slurm_cpus_per_task": "1", "slurm_job_cpus_per_node": "1", "slurm_job_end_time": "1789591261", "slurm_job_id": "51973560", "slurm_job_name": "bench-mapvar-psmc", "slurm_job_nodelist": "cn604-18", "slurm_job_partition": "batch", "slurm_job_start_time": "1789582261", "slurm_mem_per_node": "12288", "start_epoch": 1789582287.1899269, "start_utc": "2026-09-16T18:11:27.189910Z", "usr_bin_time": true}
|
| 2 |
+
{"cgroup": "/sys/fs/cgroup/system.slice/slurmstepd.scope/job_51973560", "cgroup_cpu_system_s": 0.596707, "cgroup_cpu_usage_s": 2.487041, "cgroup_cpu_user_s": 1.890334, "cgroup_memory_current_bytes": 26853376, "cgroup_memory_peak_bytes": 100925440, "cmd": "/home/hany0c/micromamba/envs/ctdd/bin/python -B -m bench_h2h.psmcplus_guard verify", "cpu_s": 0.049, "end_utc": "2026-09-16T18:11:27.371954Z", "exit_code": 0, "forwarded_signals": null, "gpu_names": [], "gpu_peak_memory_used_mib": null, "gpu_peak_utilization_pct": null, "gpu_sample_interval_s": null, "gpu_sampled": false, "gpu_samples": 0, "host": "cn604-18", "kind": "stage", "name": "psmcplus_guard", "peak_rss_kib": 18432, "peak_rss_scope": "max single process among the child and its reaped descendants (wait4)", "schema": "bench_h2h.resources.v1", "slurm_job_id": "51973560", "stage_kind": "other", "start_utc": "2026-09-16T18:11:27.249502Z", "system_cpu_s": 0.015, "term_signal": null, "user_cpu_s": 0.034, "wall_s": 0.122}
|
| 3 |
+
{"cgroup": "/sys/fs/cgroup/system.slice/slurmstepd.scope/job_51973560", "cgroup_cpu_system_s": 65.451607, "cgroup_cpu_usage_s": 659.395889, "cgroup_cpu_user_s": 593.944281, "cgroup_memory_current_bytes": 40587264, "cgroup_memory_peak_bytes": 1977163776, "cmd": "/home/hany0c/micromamba/envs/ctdd/bin/python -B /ibex/project/c2041/hany0c/bench_h2h_20260915/tool/bench_h2h/psmcplus_l32.py 0 1 --frag-dir /ibex/project/c2041/hany0c/bench_h2h_20260915/mapvar/data/v2_b_CONST_2K__v1_true/samples/.fragments --inventory /ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/inventory.npz --out /ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/store", "cpu_s": 655.429, "end_utc": "2026-09-16T18:22:31.876397Z", "exit_code": 0, "forwarded_signals": null, "gpu_names": [], "gpu_peak_memory_used_mib": null, "gpu_peak_utilization_pct": null, "gpu_sample_interval_s": null, "gpu_sampled": false, "gpu_samples": 0, "host": "cn604-18", "kind": "stage", "name": "psmcplus_l32", "peak_rss_kib": 2041524, "peak_rss_scope": "max single process among the child and its reaped descendants (wait4)", "schema": "bench_h2h.resources.v1", "slurm_job_id": "51973560", "stage_kind": "preprocess", "start_utc": "2026-09-16T18:11:30.171699Z", "system_cpu_s": 64.592, "term_signal": null, "user_cpu_s": 590.838, "wall_s": 661.705}
|
| 4 |
+
{"cgroup": "/sys/fs/cgroup/system.slice/slurmstepd.scope/job_51973560", "cgroup_cpu_system_s": 65.456588, "cgroup_cpu_usage_s": 659.435646, "cgroup_cpu_user_s": 593.979057, "cgroup_memory_current_bytes": 40316928, "cgroup_memory_peak_bytes": 1977163776, "end_utc": "2026-09-16T18:22:31.918305Z", "exit_code": 0, "gpu_peak_memory_used_mib": null, "host": "cn604-18", "job_wall_s": 664.754, "kind": "job_end", "schema": "bench_h2h.resources.v1", "slurm_job_id": "51973560", "stages_recorded": 2}
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/CPU_FEATURE
ADDED
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cpu_amd_epyc_9655
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/NTASK
ADDED
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1
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T181129Z_3621011.json
ADDED
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{
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"opened": [
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{
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"mode": "r",
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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/inventory.npz"
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}
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],
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"purposes": [
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"bench"
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],
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"refused": []
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}
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T181132Z_3621197.json
ADDED
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map_variants/CONST_2K/v1_true/necast_inputs/psmcplus_level32/store/audit/psmcplus_00000_20260916T182234Z_3675161.json
ADDED
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{
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"opened": [
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{
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"mode": "r",
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| 5 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/inventory.npz"
|
| 6 |
+
},
|
| 7 |
+
{
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| 8 |
+
"mode": "r",
|
| 9 |
+
"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/mapvar/v2_b_CONST_2K__v1_true/psmcplus_l32/store/psmcplus_00000.npz"
|
| 10 |
+
}
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| 11 |
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],
|
| 12 |
+
"purposes": [
|
| 13 |
+
"bench"
|
| 14 |
+
],
|
| 15 |
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"refused": []
|
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+
}
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