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case_list_description: Samples with mRNA expression data (1980 samples) |
case_list_category: all_cases_with_mrna_array_data |
case_list_ids: MB-5489 MB-5482 MB-5483 MB-5481 MB-5486 MB-5484 MB-5485 MB-5648 MB-5645 MB-5646 MB-5647 MB-5640 MB-5641 MB-5642 MB-3429 MB-6359 MB-6358 MB-0238 MB-0239 MB-0236 MB-0234 MB-0235 MB-0232 MB-0233 MB-0230 MB-0231 MB-6179 MB-6178 MB-4849 MB-4845 MB-6171 MB-4846 MB-4843 MB-3526 MB-3525 MB-3528 MB-6007 MB-6006 M... |
cancer_study_identifier: brca_metabric |
stable_id: brca_metabric_2016 |
case_list_name: Samples in Pereira et al., Nat Commun 2016 |
case_list_description: Samples profiled in Pereira et al., Nat Commun 2016 |
case_list_ids: MB-0492 MB-7008 MB-2770 MB-7060 MB-2771 MB-0537 MB-7083 MB-7095 MB-2790 MB-2815 MB-7025 MB-2969 MB-0531 MB-2792 MB-7048 MB-7003 MB-7088 MB-7005 MB-0528 MB-7000 MB-7044 MB-7063 MB-7055 MB-2803 MB-7049 MB-2823 MB-7082 MB-2847 MB-7093 MB-0506 MB-7061 MB-7041 MB-7040 MB-0559 MTS-T0035 MB-7099 MB-0532 MB-7052... |
cancer_study_identifier: brca_metabric |
stable_id: brca_metabric_2012 |
case_list_name: Samples in Curtis et al., Nature 2012 |
case_list_description: Samples profiled in Curtis et al., Nature 2012 |
case_list_ids: MB-0000 MB-0039 MB-0045 MB-0046 MB-0048 MB-0050 MB-0053 MB-0062 MB-0064 MB-0066 MB-0068 MB-0079 MB-0081 MB-0083 MB-0093 MB-0095 MB-0097 MB-0100 MB-0108 MB-0113 MB-0120 MB-0124 MB-0134 MB-0138 MB-0139 MB-0148 MB-0149 MB-0157 MB-0171 MB-0174 MB-0197 MB-0198 MB-0221 MB-0222 MB-0223 MB-0224 MB-0229 MB-0233 M... |
cancer_study_identifier: brca_metabric |
stable_id: brca_metabric_sequenced |
case_list_name: Samples with mutation data |
case_list_description: Samples with mutation data (2433 samples) |
case_list_category: all_cases_with_mutation_data |
case_list_ids: MB-0492 MB-7008 MB-2770 MB-7060 MB-2771 MB-0537 MB-7083 MB-7095 MB-2790 MB-2815 MB-7025 MB-2969 MB-0531 MB-2792 MB-7048 MB-7003 MB-7088 MB-7005 MB-0528 MB-7000 MB-7044 MB-7063 MB-7055 MB-2803 MB-7049 MB-2823 MB-7082 MB-2847 MB-7093 MB-0506 MB-7061 MB-7041 MB-7040 MB-0559 MTS-T0035 MB-7099 MB-0532 MB-7052... |
#Patient Identifier Lymph nodes examined positive Nottingham prognostic index Cellularity Chemotherapy Cohort ER status measured by IHC HER2 status measured by SNP6 Hormone Therapy Inferred Menopausal State Sex Integrative Cluster Age at Diagnosis Overall Survival (Months) Overall Survival Status Pam50 + Claudin-low su... |
#Identifier to uniquely specify a patient. Number of lymphnodes positive Nottingham prognostic index Tumor Content Chemotherapy. Cohort. ER status measured by IHC HER2 status measured by SNP6 Hormone Therapy Inferred Menopausal State Sex Integrative Cluster Age at Diagnosis Overall survival in months since initial diag... |
#STRING STRING NUMBER STRING STRING STRING STRING STRING STRING STRING STRING STRING NUMBER NUMBER STRING STRING STRING STRING STRING STRING STRING STRING NUMBER STRING |
#1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 |
PATIENT_ID LYMPH_NODES_EXAMINED_POSITIVE NPI CELLULARITY CHEMOTHERAPY COHORT ER_IHC HER2_SNP6 HORMONE_THERAPY INFERRED_MENOPAUSAL_STATE SEX INTCLUST AGE_AT_DIAGNOSIS OS_MONTHS OS_STATUS CLAUDIN_SUBTYPE THREEGENE VITAL_STATUS LATERALITY RADIO_THERAPY HISTOLOGICAL_SUBTYPE BREAST_SURGERY RFS_MONTHS RFS_STATUS |
MB-0000 10 6.044 NO 1 Positve NEUTRAL YES Post Female 4ER+ 75.65 140.5 0:LIVING claudin-low ER-/HER2- Living Right YES Ductal/NST MASTECTOMY 140.5 0:Not Recurred |
MB-0002 0 4.02 High NO 1 Positve NEUTRAL YES Pre Female 4ER+ 43.19 84.6333333333333 0:LIVING LumA ER+/HER2- High Prolif Living Right YES Ductal/NST BREAST CONSERVING 84.6333333333333 0:Not Recurred |
MB-0005 1 4.03 High YES 1 Positve NEUTRAL YES Pre Female 3 48.87 163.7 1:DECEASED LumB Died of Disease Right NO Ductal/NST MASTECTOMY 153.3 1:Recurred |
MB-0006 3 4.05 Moderate YES 1 Positve NEUTRAL YES Pre Female 9 47.68 164.933333333333 0:LIVING LumB Living Right YES Mixed MASTECTOMY 164.933333333333 0:Not Recurred |
MB-0008 8 6.08 High YES 1 Positve NEUTRAL YES Post Female 9 76.97 41.3666666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Right YES Mixed MASTECTOMY 18.8 1:Recurred |
MB-0010 0 4.062 Moderate NO 1 Positve NEUTRAL YES Post Female 7 78.77 7.8 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 2.93333333333333 1:Recurred |
MB-0014 1 4.02 Moderate YES 1 Positve LOSS YES Post Female 3 56.45 164.333333333333 0:LIVING LumB Living Right YES Ductal/NST BREAST CONSERVING 164.333333333333 0:Not Recurred |
MB-0020 6.13 High YES 1 Negative NEUTRAL NO Post Female 4ER- 70 22.4 1:DECEASED Normal ER-/HER2- Died of Disease Left YES Lobular MASTECTOMY 11.9 1:Recurred |
MB-0022 1 4.058 Moderate NO 1 Positve NEUTRAL YES Post Female 3 89.08 99.5333333333333 1:DECEASED claudin-low Died of Other Causes Left YES Mixed BREAST CONSERVING 99.5333333333333 0:Not Recurred |
MB-0025 11 6.68 1 Positve Female 76.24 NA Ductal/NST 128 1:Recurred |
MB-0028 1 5.032 Moderate NO 1 Positve GAIN YES Post Female 9 86.41 36.5666666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Other Causes Right YES Ductal/NST BREAST CONSERVING 36.5666666666667 0:Not Recurred |
MB-0035 0 3.056 High NO 1 Negative LOSS NO Post Female 3 84.22 36.2666666666667 1:DECEASED Her2 ER+/HER2- High Prolif Died of Disease Left NO Lobular MASTECTOMY 36.2666666666667 1:Recurred |
MB-0036 0 3.044 Moderate NO 1 Positve NEUTRAL YES Post Female 3 85.49 132.033333333333 1:DECEASED LumA ER+/HER2- Low Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 124.966666666667 1:Recurred |
MB-0039 0 2.042 High NO 1 Positve GAIN YES Post Female 4ER+ 70.91 163.533333333333 0:LIVING LumB Living Left YES Ductal/NST BREAST CONSERVING 163.533333333333 0:Not Recurred |
MB-0045 3 5.038 High YES 1 Negative NEUTRAL NO Pre Female 4ER- 45.27 164.9 0:LIVING claudin-low Living Right YES Ductal/NST MASTECTOMY 107.4 1:Recurred |
MB-0046 24 6.072 High NO 1 Positve GAIN YES Post Female 5 83.02 14.1333333333333 1:DECEASED LumA Died of Other Causes Left YES Ductal/NST MASTECTOMY 13.5333333333333 1:Recurred |
MB-0048 1 4.05 Low YES 1 Positve GAIN YES Post Female 4ER+ 51.46 103.833333333333 0:LIVING claudin-low Living Left YES Ductal/NST BREAST CONSERVING 103.833333333333 0:Not Recurred |
MB-0050 3 4.066 Moderate YES 1 Positve NEUTRAL YES Pre Female 8 44.64 75.3333333333333 0:LIVING Normal ER+/HER2- Low Prolif Living Right YES Mixed BREAST CONSERVING 75.3333333333333 0:Not Recurred |
MB-0053 0 3.046 High NO 1 Positve NEUTRAL YES Post Female 7 70.02 161.066666666667 0:LIVING LumB Living Right YES Ductal/NST BREAST CONSERVING 161.066666666667 0:Not Recurred |
MB-0054 0 4.072 Moderate NO 1 Positve GAIN YES Post Female 10 66.91 160.3 0:LIVING LumB Living Right YES Ductal/NST MASTECTOMY 121.433333333333 1:Recurred |
MB-0056 0 3.058 High NO 1 Positve NEUTRAL YES Post Female 1 62.62 62.8666666666667 0:LIVING LumB Living Right NO Mixed MASTECTOMY 62.8666666666667 0:Not Recurred |
MB-0059 4.034 High NO 1 Positve NEUTRAL YES Post Female 8 75.58 160.9 0:LIVING LumA ER+/HER2- High Prolif Living Left YES Ductal/NST MASTECTOMY 160.9 0:Not Recurred |
MB-0060 0 4.046 High YES 1 Positve NEUTRAL YES Pre Female 10 45.43 140.866666666667 0:LIVING LumB ER+/HER2- High Prolif Living Right YES Ductal/NST BREAST CONSERVING 140.866666666667 0:Not Recurred |
MB-0062 0 4.034 High YES 1 Negative NEUTRAL NO Post Female 10 52.14 153.966666666667 0:LIVING Basal Living Right YES Ductal/NST MASTECTOMY 153.966666666667 0:Not Recurred |
MB-0064 0 3.036 Moderate NO 1 Positve GAIN YES Post Female 3 69.13 108.933333333333 0:LIVING LumB Living Right NO Ductal/NST BREAST CONSERVING 108.933333333333 0:Not Recurred |
MB-0066 1 4.032 High NO 1 Positve NEUTRAL YES Post Female 7 61.49 157.433333333333 0:LIVING LumB ER+/HER2- High Prolif Living Left YES Ductal/NST BREAST CONSERVING 157.433333333333 0:Not Recurred |
MB-0068 1 3.024 High NO 1 Positve LOSS YES Post Female 3 51.01 103.133333333333 0:LIVING LumA Living Left YES Tubular/ cribriform BREAST CONSERVING 103.133333333333 0:Not Recurred |
MB-0071 4.1 High NO 1 Positve NEUTRAL YES Post Female 8 68.42 131 1:DECEASED LumB Died of Other Causes YES MASTECTOMY 131 0:Not Recurred |
MB-0079 4 6.08 High YES 1 Negative NEUTRAL NO Post Female 10 50.42 28.5 1:DECEASED Her2 Died of Disease Right YES Ductal/NST MASTECTOMY 26.6333333333333 1:Recurred |
MB-0081 0 3.048 Moderate NO 1 Positve NEUTRAL YES Pre Female 3 49.61 69.5 0:LIVING claudin-low Living Right YES Ductal/NST BREAST CONSERVING 69.5 0:Not Recurred |
MB-0083 0 3.026 Moderate NO 1 Positve NEUTRAL YES Post Female 2 64.85 86.0666666666667 1:DECEASED LumB Died of Disease Right YES Lobular BREAST CONSERVING 86.0666666666667 1:Recurred |
MB-0093 1 5.028 High NO 1 Positve NEUTRAL YES Pre Female 3 43.55 153.2 0:LIVING LumB Living Left YES Mixed BREAST CONSERVING 153.2 0:Not Recurred |
MB-0095 1 4.11 High NO 1 Positve NEUTRAL YES Post Female 8 80.5 49.7666666666667 1:DECEASED LumB Died of Other Causes Left YES Ductal/NST MASTECTOMY 49.7666666666667 0:Not Recurred |
MB-0097 3 5.06 High NO 1 Positve NEUTRAL YES Post Female 8 78.19 98.7 0:LIVING LumA Living Left YES Ductal/NST MASTECTOMY 98.7 0:Not Recurred |
MB-0099 3.042 Moderate YES 1 Positve LOSS YES Post Female 4ER+ 51.58 132.1 1:DECEASED LumB Died of Disease Right YES Ductal/NST BREAST CONSERVING 81.5 1:Recurred |
MB-0100 0 4.078 Low YES 1 Negative NEUTRAL NO Post Female 10 68.68 8.06666666666667 1:DECEASED Basal ER-/HER2- Died of Disease Right YES Ductal/NST MASTECTOMY 7.93333333333333 1:Recurred |
MB-0101 0 3.068 Moderate NO 1 Positve NEUTRAL YES Pre Female 8 46.89 148.033333333333 0:LIVING Normal ER+/HER2- Low Prolif Living Right YES Lobular MASTECTOMY 34.1666666666667 1:Recurred |
MB-0102 16 5.08 High YES 1 Positve NEUTRAL YES Post Female 3 51.38 140.766666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Right YES Lobular MASTECTOMY 102 1:Recurred |
MB-0106 5 4.14 Moderate YES 1 Positve NEUTRAL YES Pre Female 8 49.87 85.3333333333333 0:LIVING LumA ER+/HER2- Low Prolif Living Left YES Ductal/NST MASTECTOMY 85.3333333333333 0:Not Recurred |
MB-0107 0 4.036 Moderate NO 1 Positve NEUTRAL YES Post Female 1 65.59 158.033333333333 0:LIVING LumB Living Right NO Ductal/NST MASTECTOMY 158.033333333333 0:Not Recurred |
MB-0108 0 4.036 Low YES 1 Positve NEUTRAL YES Pre Female 4ER+ 43.15 42.7 1:DECEASED claudin-low Died of Disease Right YES Ductal/NST BREAST CONSERVING 23 1:Recurred |
MB-0109 0 4.09 High NO 1 Positve GAIN NO Post Female 9 82.53 112.4 1:DECEASED Basal ER+/HER2- High Prolif Died of Other Causes NO Ductal/NST 112.4 0:Not Recurred |
MB-0110 2.14 Low NO 1 NEUTRAL NO Pre Female 3 45.73 157.5 0:LIVING claudin-low Living Left NO BREAST CONSERVING 12.3333333333333 1:Recurred |
MB-0111 0 2.054 High NO 1 Positve NEUTRAL YES Post Female 3 54.23 127.1 0:LIVING LumA ER+/HER2- Low Prolif Living Right NO Ductal/NST MASTECTOMY 127.1 0:Not Recurred |
MB-0112 14 6.3 High NO 1 Positve NEUTRAL YES Post Female 3 83.89 39.1666666666667 1:DECEASED LumA ER+/HER2- Low Prolif Died of Disease Right YES Lobular MASTECTOMY 25.4666666666667 1:Recurred |
MB-0113 3 5.034 Low YES 1 Positve GAIN YES Pre Female 5 36.96 43.1666666666667 0:LIVING Her2 HER2+ Living Right YES Ductal/NST MASTECTOMY 43.1666666666667 0:Not Recurred |
MB-0114 0 3.06 Low NO 1 Positve NEUTRAL YES Pre Female 8 48.59 13.4 0:LIVING LumA ER+/HER2- High Prolif Living Left NO Ductal/NST MASTECTOMY 13.4 0:Not Recurred |
MB-0115 0 4.05 Moderate YES 1 Negative NEUTRAL NO Pre Female 10 39.84 66.7333333333333 1:DECEASED Basal ER-/HER2- Died of Disease Left YES Ductal/NST MASTECTOMY 32.1666666666667 1:Recurred |
MB-0116 1 4.12 Moderate YES 1 Positve NEUTRAL YES Pre Female 6 42.55 122.266666666667 0:LIVING Normal ER+/HER2- High Prolif Living Right YES Lobular MASTECTOMY 122.266666666667 0:Not Recurred |
MB-0117 1 4.046 Moderate NO 1 Positve NEUTRAL YES Post Female 1 60.07 2.4 0:LIVING LumA ER+/HER2- Low Prolif Living Right YES Mixed BREAST CONSERVING 2.4 0:Not Recurred |
MB-0119 1 4.046 High NO 1 Positve GAIN YES Post Female 7 82.73 95.8666666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 95.8666666666667 1:Recurred |
MB-0120 1 5.052 Moderate NO 1 Positve GAIN YES Post Female 9 72.1 29.0666666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 29.0666666666667 1:Recurred |
MB-0121 6 5.06 Moderate NO 1 Positve NEUTRAL YES Post Female 8 78.73 152.2 0:LIVING LumA ER+/HER2- Low Prolif Living Left YES Ductal/NST MASTECTOMY 152.2 0:Not Recurred |
MB-0122 1 3.04 Moderate NO 1 Positve NEUTRAL YES Post Female 8 58.95 138.9 0:LIVING LumA ER+/HER2- Low Prolif Living Right YES Ductal/NST BREAST CONSERVING 138.9 0:Not Recurred |
MB-0123 0 4.05 Moderate NO 1 Positve NEUTRAL YES Post Female 1 76.89 114.233333333333 1:DECEASED LumB ER+/HER2- High Prolif Died of Other Causes Right NO Ductal/NST MASTECTOMY 26.2 1:Recurred |
MB-0124 2 4.1 Low YES 1 Positve NEUTRAL YES Pre Female 8 43.46 118.2 0:LIVING LumA ER+/HER2- Low Prolif Living Left YES Mixed BREAST CONSERVING 118.2 0:Not Recurred |
MB-0125 0 2.018 Low NO 1 Positve NEUTRAL YES Post Female 8 73.98 1.26666666666667 0:LIVING LumB ER+/HER2- Low Prolif Living Right NO Mixed BREAST CONSERVING 1.26666666666667 0:Not Recurred |
MB-0126 0 3.07 Moderate NO 1 Positve NEUTRAL YES Post Female 8 61.95 127.633333333333 0:LIVING LumA ER+/HER2- Low Prolif Living Right YES Ductal/NST MASTECTOMY 41.7333333333333 1:Recurred |
MB-0127 1 4.026 YES 1 Positve NEUTRAL YES Post Female 3 52.11 132.066666666667 0:LIVING Normal ER+/HER2- Low Prolif Living Right YES Ductal/NST BREAST CONSERVING 132.066666666667 0:Not Recurred |
MB-0128 0 3.028 Low NO 1 Positve NEUTRAL YES Post Female 3 57.4 137.8 0:LIVING claudin-low ER+/HER2- Low Prolif Living Left YES Ductal/NST BREAST CONSERVING 137.8 0:Not Recurred |
MB-0129 4 6.048 Low YES 1 Negative GAIN NO Post Female 5 63.53 38.5666666666667 1:DECEASED Her2 HER2+ Died of Other Causes Right YES Ductal/NST MASTECTOMY 38.5666666666667 0:Not Recurred |
MB-0130 0 2.034 Low NO 1 Positve GAIN YES Post Female 5 56.75 153.566666666667 0:LIVING LumA HER2+ Living Left NO Ductal/NST MASTECTOMY 153.566666666667 0:Not Recurred |
MB-0131 0 4.078 Moderate YES 1 Positve NEUTRAL YES Post Female 8 69.16 66.6333333333333 1:DECEASED LumA ER+/HER2- High Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 64.4333333333333 1:Recurred |
MB-0133 1 3.16 Moderate YES 1 Positve NEUTRAL YES Post Female 8 58.89 151 0:LIVING LumA ER+/HER2- Low Prolif Living Left YES Mixed BREAST CONSERVING 151 0:Not Recurred |
MB-0134 3 5.044 High NO 1 Positve NEUTRAL YES Post Female 8 73.11 12.9333333333333 1:DECEASED LumB ER+/HER2- High Prolif Died of Disease Left YES Ductal/NST MASTECTOMY 11.8666666666667 1:Recurred |
MB-0135 1 5.07 Moderate NO 1 Positve NEUTRAL YES Post Female 2 74.09 116.633333333333 0:LIVING LumB ER+/HER2- High Prolif Living Left YES Ductal/NST MASTECTOMY 116.633333333333 0:Not Recurred |
MB-0136 0 3.026 High NO 1 Positve NEUTRAL YES Post Female 3 72.3 88.2 0:LIVING LumA ER+/HER2- Low Prolif Living Right NO Ductal/NST BREAST CONSERVING 88.2 0:Not Recurred |
MB-0138 0 3.036 Moderate NO 1 Positve LOSS YES Post Female 3 51.33 150.566666666667 0:LIVING LumA ER+/HER2- Low Prolif Living Left NO Ductal/NST BREAST CONSERVING 150.566666666667 0:Not Recurred |
MB-0139 1 4.06 Moderate NO 1 Positve NEUTRAL YES Pre Female 3 47.62 109.2 0:LIVING LumA ER+/HER2- Low Prolif Living Right YES Lobular BREAST CONSERVING 109.2 0:Not Recurred |
MB-0140 1 4.054 High NO 1 Positve NEUTRAL YES Post Female 8 74.07 147.933333333333 0:LIVING LumB ER+/HER2- High Prolif Living Right YES Ductal/NST BREAST CONSERVING 147.933333333333 0:Not Recurred |
MB-0142 0 3.032 Moderate NO 1 Positve LOSS NO Post Female 1 57.99 12.4 0:LIVING LumA ER+/HER2- Low Prolif Living Right NO Mixed MASTECTOMY 12.4 0:Not Recurred |
MB-0143 2 5.044 High NO 1 Positve NEUTRAL YES Post Female 9 85.39 54.3333333333333 1:DECEASED LumA ER+/HER2- High Prolif Died of Other Causes Right YES Ductal/NST BREAST CONSERVING 54.3333333333333 0:Not Recurred |
MB-0144 6 6.052 High NO 1 Positve NEUTRAL YES Post Female 8 79.73 152.066666666667 1:DECEASED LumB ER+/HER2- Low Prolif Died of Disease Left YES Ductal/NST BREAST CONSERVING 117.933333333333 1:Recurred |
MB-0145 0 3.04 Moderate NO 1 Positve NEUTRAL YES Post Female 3 62.4 147.666666666667 0:LIVING LumA ER+/HER2- Low Prolif Living Left YES Lobular BREAST CONSERVING 147.666666666667 0:Not Recurred |
MB-0146 2 5.044 High NO 1 Positve LOSS YES Post Female 1 81 122.166666666667 1:DECEASED LumB ER+/HER2- High Prolif Died of Other Causes Left YES Ductal/NST BREAST CONSERVING 122.166666666667 0:Not Recurred |
MB-0147 9 5.076 High NO 1 Positve NEUTRAL YES Post Female 2 79.28 51.7666666666667 1:DECEASED LumA ER+/HER2- High Prolif Died of Disease Right YES Lobular MASTECTOMY 51.2666666666667 1:Recurred |
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