xml_file stringlengths 5 11 | reference_id stringlengths 1 7 | date_last_updated stringclasses 487
values | pubmed_id stringlengths 5 8 ⌀ | article_year int64 1.95k 2.03k ⌀ | article_title stringlengths 23 347 ⌀ | journal_title stringlengths 3 197 ⌀ | authors stringlengths 5 2.35k ⌀ | epitope_id stringlengths 1 7 ⌀ | epitope_name stringlengths 1 85 ⌀ | epitope_structure_type stringclasses 8
values | epitope_chemical_type stringclasses 18
values | linear_sequence stringlengths 1 829 ⌀ | linear_sequence_length int64 1 829 ⌀ | discontinuous_residues stringlengths 2 419 ⌀ | starting_position int64 0 34.8k ⌀ | ending_position int64 3 34.8k ⌀ | source_organism_id stringlengths 1 8 ⌀ | source_molecule_genbank_id stringlengths 4 14 ⌀ | reference_region stringlengths 2 409 ⌀ | epitope_structure_defines stringclasses 4
values | epitope_evidence_code stringclasses 6
values | assay_category stringclasses 4
values | assay_id stringlengths 2 8 | assay_type_id stringclasses 412
values | assay_location_of_data stringlengths 4 126 ⌀ | qualitative_measurement stringclasses 5
values | is_positive bool 2
classes | quantitative_measurement stringlengths 3 25 ⌀ | host_organism_id stringclasses 729
values | host_sex stringclasses 2
values | host_age stringlengths 1 39 ⌀ | disease_state stringclasses 666
values | mhc_allele_id stringclasses 868
values | mhc_allele_types_present stringlengths 1 150 ⌀ | cell_type stringclasses 41
values | cell_tissue_type stringclasses 49
values | cell_culture_conditions stringclasses 9
values | antigen_evidence_code stringclasses 6
values | immunogen_evidence_code stringclasses 6
values | assay_comments stringclasses 0
values | split_bucket int64 1 9 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1048120.xml | 1048120 | 2026-04-08-07:00 | 41784932 | 2,026 | Hydrogen-Deuterium Exchange Mass Spectrometry Reveals an Antibody-Induced Allosteric Pathway Driving SARS-CoV-2 Spike Trimer Disassembly. | Journal of the American Chemical Society | Yuxiang Luo; Banghui Liu; Ruijie Liu; Qiuluan Chen; Xiaoli Xiong; Huilin Li | 2134992 | Epitope of mAb B38 on SARS-CoV-2 S | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | R403, Q409, T415, G416, K417, D420, Y421, L455, F456, R457, K458, S459, N460, Y473, Q474, A475, G476, S477, F486, N487, Y489, F490, Q493,Y495, G496, Q498, N501, G502, Y505 | null | null | 2697049 | P0DTC2.1 | null | Partial Epitope | null | BCell | 28524868 | 589 | Figure S1 | Positive | true | 115.0 | 9606 | null | null | DOID:0080600 | null | null | null | null | null | Representative selection | Representative selection | null | 4 |
1048120.xml | 1048120 | 2026-04-08-07:00 | 41784932 | 2,026 | Hydrogen-Deuterium Exchange Mass Spectrometry Reveals an Antibody-Induced Allosteric Pathway Driving SARS-CoV-2 Spike Trimer Disassembly. | Journal of the American Chemical Society | Yuxiang Luo; Banghui Liu; Ruijie Liu; Qiuluan Chen; Xiaoli Xiong; Huilin Li | 2134992 | Epitope of mAb B38 on SARS-CoV-2 S | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | R403, Q409, T415, G416, K417, D420, Y421, L455, F456, R457, K458, S459, N460, Y473, Q474, A475, G476, S477, F486, N487, Y489, F490, Q493,Y495, G496, Q498, N501, G502, Y505 | null | null | 2697049 | P0DTC2.1 | null | Partial Epitope | null | BCell | 28524869 | 586 | Figure S1 | Positive | true | 2510.0 | 9606 | null | null | DOID:0080600 | null | null | null | null | null | Representative selection | Representative selection | null | 4 |
1048120.xml | 1048120 | 2026-04-08-07:00 | 41784932 | 2,026 | Hydrogen-Deuterium Exchange Mass Spectrometry Reveals an Antibody-Induced Allosteric Pathway Driving SARS-CoV-2 Spike Trimer Disassembly. | Journal of the American Chemical Society | Yuxiang Luo; Banghui Liu; Ruijie Liu; Qiuluan Chen; Xiaoli Xiong; Huilin Li | 2134992 | Epitope of mAb B38 on SARS-CoV-2 S | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | R403, Q409, T415, G416, K417, D420, Y421, L455, F456, R457, K458, S459, N460, Y473, Q474, A475, G476, S477, F486, N487, Y489, F490, Q493,Y495, G496, Q498, N501, G502, Y505 | null | null | 2697049 | P0DTC2.1 | null | Partial Epitope | null | BCell | 28524870 | 587 | Figure S1 | Positive | true | 0.000288 | 9606 | null | null | DOID:0080600 | null | null | null | null | null | Representative selection | Representative selection | null | 4 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531394 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531562 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531573 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531574 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531237 | 48 | Figures 3 and 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531686 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075029 | S51 | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVADY | 9 | null | 357 | 365 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531685 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531395 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531563 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531575 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531576 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531687 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531688 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 190494 | NP46 | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPSGTWL | 10 | null | 322 | 331 | 10002370 | P0DTC9.1 | null | Exact Epitope | null | TCell | 28531238 | 48 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531396 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531564 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531689 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531690 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531239 | 48 | Figures 3 and 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531578 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1074989 | S134 | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSTASALGK | 10 | null | 938 | 947 | 10002370 | P0DTC2.1 | null | Exact Epitope | null | TCell | 28531577 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1330469 | M13 | FragmentOfANaturalSequenceMolecule | Peptide from protein | GLMWLSYFI | 9 | null | 89 | 97 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531397 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1330469 | M13 | FragmentOfANaturalSequenceMolecule | Peptide from protein | GLMWLSYFI | 9 | null | 89 | 97 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531565 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1330469 | M13 | FragmentOfANaturalSequenceMolecule | Peptide from protein | GLMWLSYFI | 9 | null | 89 | 97 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531691 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1330469 | M13 | FragmentOfANaturalSequenceMolecule | Peptide from protein | GLMWLSYFI | 9 | null | 89 | 97 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531692 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1330469 | M13 | FragmentOfANaturalSequenceMolecule | Peptide from protein | GLMWLSYFI | 9 | null | 89 | 97 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531240 | 48 | Figure 5 | Positive-Intermediate | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531398 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531566 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531579 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531580 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531693 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531241 | 48 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1125058 | E3 | FragmentOfANaturalSequenceMolecule | Peptide from protein | FLAFVVFL | 8 | null | 20 | 27 | 10002370 | P0DTC4.1 | null | Exact Epitope | null | TCell | 28531694 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 7 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531399 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531567 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531581 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531582 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531672 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531242 | 48 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | null | null | PBMC | blood | Direct Ex Vivo | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531675 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531673 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075069 | M14 | FragmentOfANaturalSequenceMolecule | Peptide from protein | SYFIASFRLFA | 11 | null | 94 | 104 | 10002370 | P0DTC5.1 | null | Exact Epitope | null | TCell | 28531674 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075119 | ORF8 | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVL | 14 | null | 105 | 118 | 10002370 | P0DTC8.1 | null | Exact Epitope | null | TCell | 28531583 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075119 | ORF8 | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVL | 14 | null | 105 | 118 | 10002370 | P0DTC8.1 | null | Exact Epitope | null | TCell | 28531584 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075119 | ORF8 | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVL | 14 | null | 105 | 118 | 10002370 | P0DTC8.1 | null | Exact Epitope | null | TCell | 28531400 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075119 | ORF8 | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVL | 14 | null | 105 | 118 | 10002370 | P0DTC8.1 | null | Exact Epitope | null | TCell | 28531568 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075090 | ORF7a | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFITLCFTLK | 10 | null | 108 | 117 | 10002370 | P0DTC7.1 | null | Exact Epitope | null | TCell | 28531585 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075090 | ORF7a | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFITLCFTLK | 10 | null | 108 | 117 | 10002370 | P0DTC7.1 | null | Exact Epitope | null | TCell | 28531586 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075090 | ORF7a | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFITLCFTLK | 10 | null | 108 | 117 | 10002370 | P0DTC7.1 | null | Exact Epitope | null | TCell | 28531401 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 1075090 | ORF7a | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFITLCFTLK | 10 | null | 108 | 117 | 10002370 | P0DTC7.1 | null | Exact Epitope | null | TCell | 28531569 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454171 | S51v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVANY | 9 | null | 357 | 365 | 10003600 | UBN74517.1 | null | Exact Epitope | null | TCell | 28531603 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454171 | S51v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVANY | 9 | null | 357 | 365 | 10003600 | UBN74517.1 | null | Exact Epitope | null | TCell | 28531604 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454171 | S51v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVANY | 9 | null | 357 | 365 | 10003600 | UBN74517.1 | null | Exact Epitope | null | TCell | 28531619 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454171 | S51v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RISNCVANY | 9 | null | 357 | 365 | 10003600 | UBN74517.1 | null | Exact Epitope | null | TCell | 28531620 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 5 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454145 | NP46v | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPLGTWL | 10 | null | 322 | 331 | 10003600 | QTQ43869.1 | null | Exact Epitope | null | TCell | 28531601 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454145 | NP46v | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPLGTWL | 10 | null | 322 | 331 | 10003600 | QTQ43869.1 | null | Exact Epitope | null | TCell | 28531602 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454145 | NP46v | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPLGTWL | 10 | null | 322 | 331 | 10003600 | QTQ43869.1 | null | Exact Epitope | null | TCell | 28531621 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454145 | NP46v | FragmentOfANaturalSequenceMolecule | Peptide from protein | MEVTPLGTWL | 10 | null | 322 | 331 | 10003600 | QTQ43869.1 | null | Exact Epitope | null | TCell | 28531622 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454139 | S134v | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSSASALGK | 10 | null | 938 | 947 | 10003600 | USO18191.1 | null | Exact Epitope | null | TCell | 28531605 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454139 | S134v | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSSASALGK | 10 | null | 938 | 947 | 10003600 | USO18191.1 | null | Exact Epitope | null | TCell | 28531606 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454139 | S134v | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSSASALGK | 10 | null | 938 | 947 | 10003600 | USO18191.1 | null | Exact Epitope | null | TCell | 28531623 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454139 | S134v | FragmentOfANaturalSequenceMolecule | Peptide from protein | LSSSASALGK | 10 | null | 938 | 947 | 10003600 | USO18191.1 | null | Exact Epitope | null | TCell | 28531624 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 8 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454115 | E3v | FragmentOfANaturalSequenceMolecule | Peptide from protein | FFAFVVFL | 8 | null | 20 | 27 | 10003600 | UTB19434.2 | null | Exact Epitope | null | TCell | 28531607 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454115 | E3v | FragmentOfANaturalSequenceMolecule | Peptide from protein | FFAFVVFL | 8 | null | 20 | 27 | 10003600 | UTB19434.2 | null | Exact Epitope | null | TCell | 28531608 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454115 | E3v | FragmentOfANaturalSequenceMolecule | Peptide from protein | FFAFVVFL | 8 | null | 20 | 27 | 10003600 | UTB19434.2 | null | Exact Epitope | null | TCell | 28531625 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454115 | E3v | FragmentOfANaturalSequenceMolecule | Peptide from protein | FFAFVVFL | 8 | null | 20 | 27 | 10003600 | UTB19434.2 | null | Exact Epitope | null | TCell | 28531626 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 2 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531609 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531610 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531627 | 53 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531680 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531681 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454176 | M14v | FragmentOfANaturalSequenceMolecule | Peptide from protein | RYFIASFRLFA | 11 | null | 94 | 104 | 10003600 | UIX13225.1 | null | Exact Epitope | null | TCell | 28531628 | 337 | Figure 5 | Positive-Low | true | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 1 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454209 | ORF8v | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVV | 14 | null | 34 | 47 | 10003600 | UOU05210.1 | null | Exact Epitope | null | TCell | 28531611 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454209 | ORF8v | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVV | 14 | null | 34 | 47 | 10003600 | UOU05210.1 | null | Exact Epitope | null | TCell | 28531612 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454209 | ORF8v | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVV | 14 | null | 34 | 47 | 10003600 | UOU05210.1 | null | Exact Epitope | null | TCell | 28531629 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454209 | ORF8v | FragmentOfANaturalSequenceMolecule | Peptide from protein | YEDFLEYHDVRVVV | 14 | null | 34 | 47 | 10003600 | UOU05210.1 | null | Exact Epitope | null | TCell | 28531630 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454201 | ORF7av | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFTTLYFTLK | 10 | null | null | null | 10003600 | null | null | Exact Epitope | null | TCell | 28531613 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454201 | ORF7av | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFTTLYFTLK | 10 | null | null | null | 10003600 | null | null | Exact Epitope | null | TCell | 28531614 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454201 | ORF7av | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFTTLYFTLK | 10 | null | null | null | 10003600 | null | null | Exact Epitope | null | TCell | 28531631 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454201 | ORF7av | FragmentOfANaturalSequenceMolecule | Peptide from protein | VFTTLYFTLK | 10 | null | null | null | 10003600 | null | null | Exact Epitope | null | TCell | 28531632 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 3 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531615 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531616 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531633 | 53 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531634 | 337 | Figure 5 | Negative | false | null | 9606 | null | null | DOID:0080600 | 304 | 436 425 587 323 75 67 | T cell CD4+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531682 | 53 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048121.xml | 1048121 | 2026-03-31-07:00 | 41767267 | 2,026 | Extensive evolution and T cell escape by SARS-CoV-2 in a 2.5-year persistent infection of an immunocompromised host. | iScience | José Afonso Guerra-Assunção; Ruairi McErlean; Katie Townsend; Selin Cankat; Leonhard M Flaxl; Shengwei Jamie Tian; Thomas R Turner; Neema P Mayor; Judith Breuer; Leo Swadling; David M Lowe | 2454197 | NSP2v | FragmentOfANaturalSequenceMolecule | Peptide from protein | TSDLATNNLVVMVY | 14 | null | 594 | 607 | 10003600 | UBO86226.1 | null | Exact Epitope | null | TCell | 28531683 | 337 | Figure 5 | Positive | true | null | 9606 | null | null | DOID:0080600 | 303 | 143 776 255 260 12796 1027 | T cell CD8+ | blood | Short Term Restimulated | Exact match to reference information | Representative selection | null | 9 |
1048124.xml | 1048124 | 2026-04-15-07:00 | 41754551 | 2,026 | Elucidating the Molecular Mechanism of 3D1 Antibody Binding to a Swine Enteric Coronavirus Antigen. | Viruses | Liangminghui Zhang; Ze Liang; Guang Yang; Lei Yan | 2454344 | Epitope of Fab 3D1 on pepAVVNQN | FragmentOfANaturalSequenceMolecule | Peptide from protein | AVVNQN | 6 | null | 804 | 809 | 2032731 | MF094681 | null | Exact Epitope | null | BCell | 28538784 | 436 | Figures 2 and 3, Table 1, and PDB 22GI | Positive | true | null | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | Representative selection | null | 6 |
1048124.xml | 1048124 | 2026-04-15-07:00 | 41754551 | 2,026 | Elucidating the Molecular Mechanism of 3D1 Antibody Binding to a Swine Enteric Coronavirus Antigen. | Viruses | Liangminghui Zhang; Ze Liang; Guang Yang; Lei Yan | 2454344 | Epitope of Fab 3D1 on pepAVVNQN | FragmentOfANaturalSequenceMolecule | Peptide from protein | AVVNQN | 6 | null | 804 | 809 | 2032731 | MF094681 | null | Exact Epitope | null | BCell | 28538785 | 547 | Figure 6 | Positive | true | 5.39 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | Representative selection | null | 6 |
1048124.xml | 1048124 | 2026-04-15-07:00 | 41754551 | 2,026 | Elucidating the Molecular Mechanism of 3D1 Antibody Binding to a Swine Enteric Coronavirus Antigen. | Viruses | Liangminghui Zhang; Ze Liang; Guang Yang; Lei Yan | 2454344 | Epitope of Fab 3D1 on pepAVVNQN | FragmentOfANaturalSequenceMolecule | Peptide from protein | AVVNQN | 6 | null | 804 | 809 | 2032731 | MF094681 | null | Exact Epitope | null | BCell | 28538782 | 558 | Figure 1 | Positive | true | null | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | Representative selection | null | 6 |
1048124.xml | 1048124 | 2026-04-15-07:00 | 41754551 | 2,026 | Elucidating the Molecular Mechanism of 3D1 Antibody Binding to a Swine Enteric Coronavirus Antigen. | Viruses | Liangminghui Zhang; Ze Liang; Guang Yang; Lei Yan | 2454344 | Epitope of Fab 3D1 on pepAVVNQN | FragmentOfANaturalSequenceMolecule | Peptide from protein | AVVNQN | 6 | null | 804 | 809 | 2032731 | MF094681 | null | Exact Epitope | null | BCell | 28538783 | 404 | Figures 1 and 6 | Positive | true | 3480.0 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | Representative selection | null | 6 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538731 | 316 | Figure 1 and 6 | Positive | true | null | 9606 | null | null | null | null | null | null | null | null | Representative selection | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538730 | 263 | Figure 1 | Positive | true | 0.000329 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538729 | 262 | Figure 1 | Positive | true | 406000.0 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538739 | 436 | Figures 2, 4, S7, Table S2 and PDB 9WWH | Positive | true | 3.51 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538726 | 437 | Figures 2, 4, S3, S4, S6, Table S3 and PDB 9X0J | Positive | true | null | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538727 | 437 | Figures 2, 4, S3, S5, S6, Table S3 and PDB 9X05 | Positive | true | null | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
1048132.xml | 1048132 | 2026-04-17-07:00 | 41765683 | 2,026 | Structures of clinical antibodies bound to IL-33 uncover two distinct epitopes underlying differential efficacy. | mAbs | Jing Chen; Yue Wang; Xinquan Wang | 2454849 | Epitope of Tozorakimab on IL-33 | DiscontinuousRegionOnAccessionSequenceMolecule | Discontinuous protein residues | null | null | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | null | null | 9606 | O95760.1 | L123, T135, F136, A137, L138, E139, D140, E148, L150, K151, K152, D153, E154, K155, D157, K158, L160, S187, P188, T189, K190 | Exact Epitope | null | BCell | 28538728 | 45 | Figure 1 | Positive | true | 0.81 | 9606 | null | null | null | null | null | null | null | null | Exact match to reference information | null | null | 4 |
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