| { |
| "contact_persistence_rows": 534519, |
| "database_name": "RNAmd", |
| "dynamic_preview_gif_ready": 5, |
| "dynamic_preview_mp4_ready": 882, |
| "dynamic_preview_ready": 882, |
| "dynamic_qc_rows": 882, |
| "generated_date": "2026-05-26", |
| "length_bins": { |
| "41-80 nt": 253, |
| "<=40 nt": 610, |
| ">80 nt": 19 |
| }, |
| "md_simulation_complete": 882, |
| "method_counts": { |
| "Electron microscopy": 67, |
| "Solution NMR": 374, |
| "X-ray diffraction": 441 |
| }, |
| "other_generic_structured_rna_count": 210, |
| "other_refined_type_count": 407, |
| "other_refined_type_counts": { |
| "7SK RNA": 4, |
| "CRISPR guide RNA": 23, |
| "IRE": 1, |
| "MALAT1-associated small cytoplasmic RNA/MEN beta RNA": 2, |
| "RNase MRP RNA": 1, |
| "RNase P RNA": 2, |
| "SRP RNA": 6, |
| "U6 snRNA": 3, |
| "UnaL2 LINE 3' element": 1, |
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| "internal ribosome entry site": 21, |
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| "mir-15 microRNA precursor family": 1, |
| "mir-2985-2 precursor": 1, |
| "mir-31 microRNA precursor family": 1, |
| "pre-miRNA": 19, |
| "psi RNA packaging signal": 2, |
| "rRNA": 12, |
| "regulatory ncRNA": 1, |
| "ribozyme": 1, |
| "short structured RNA": 43, |
| "snRNA": 16, |
| "structured RNA": 127, |
| "structured hairpin RNA": 40, |
| "tRNA": 3, |
| "telomerase RNA": 21, |
| "tmRNA": 1, |
| "viral packaging signal": 4, |
| "viral regulatory RNA": 44 |
| }, |
| "parquet_status": { |
| "contact_persistence_labels_v1.parquet": "ready", |
| "residue_flexibility_labels_v1.parquet": "ready" |
| }, |
| "primary_xtc_ready": 882, |
| "raw_trr_server_archive_available": 882, |
| "release": "v1", |
| "residue_flexibility_rows": 28242, |
| "rna_class_counts": { |
| "aptamer": 57, |
| "cis_regulatory_RNA_element": 73, |
| "other": 407, |
| "rRNA": 56, |
| "riboswitch": 59, |
| "ribozyme": 39, |
| "tRNA": 116, |
| "viral_regulatory_RNA": 75 |
| }, |
| "rna_type_confidence_counts": { |
| "high": 559, |
| "low": 170, |
| "medium": 153 |
| }, |
| "rna_type_counts": { |
| "7SK RNA": 4, |
| "CRISPR guide RNA": 23, |
| "Cyclic di-GMP-II riboswitch": 1, |
| "DUF2693-FD RNA": 1, |
| "Dengue virus SLA": 3, |
| "Enterovirus 5' cloverleaf cis-acting replication element": 3, |
| "Flavivirus 3' UTR cis-acting replication element (CRE)": 1, |
| "Fluoride riboswitch": 2, |
| "Glycine riboswitch": 1, |
| "Group II catalytic intron": 2, |
| "Guanidine-I riboswitch": 1, |
| "Guanidine-III riboswitch": 1, |
| "HBV_epsilon": 1, |
| "Hairpin ribozyme": 1, |
| "Hammerhead ribozyme (type III)": 1, |
| "Hepatitis delta virus ribozyme": 2, |
| "IRE": 1, |
| "K10 TLS": 2, |
| "MALAT1-associated small cytoplasmic RNA/MEN beta RNA": 3, |
| "Mammalian CPEB3 ribozyme": 2, |
| "NMT1 RNA": 1, |
| "Nanos 3' UTR translation control element": 2, |
| "PreQ1": 2, |
| "PreQ1-II riboswitches": 1, |
| "PrrB/RsmZ RNA family": 1, |
| "Purine riboswitch": 10, |
| "RNase MRP RNA": 1, |
| "RNase P RNA": 2, |
| "Retroviral readthrough element": 1, |
| "SAH (S-adenosyl-L-homocysteine) riboswitch aptamer": 1, |
| "SAM-III riboswitch aptamer (SMK box)": 1, |
| "SAM-V riboswitch": 1, |
| "SAM-VI (S-adenosyl methionine) riboswitch aptamer": 1, |
| "SAM/SAH riboswitch": 1, |
| "SRP RNA": 6, |
| "Sarbecovirus 5'UTR": 1, |
| "Selenocysteine transfer RNA": 1, |
| "T-box leader": 1, |
| "THF-II riboswitch (folE RNA)": 2, |
| "TPP riboswitch (THI element)": 2, |
| "ToxI antitoxin": 1, |
| "U6 snRNA": 3, |
| "UnaL2 LINE 3' element": 1, |
| "Y RNA-like": 1, |
| "ZMP/ZTP riboswitch": 2, |
| "aptamer": 61, |
| "azaaromatic riboswitch aptamer (yjdF RNA)": 1, |
| "cis-regulatory RNA element": 71, |
| "glnA": 1, |
| "internal ribosome entry site": 21, |
| "miR-16 precursor": 1, |
| "mir-15 microRNA precursor family": 1, |
| "mir-2985-2 precursor": 1, |
| "mir-31 microRNA precursor family": 1, |
| "nadA RNA": 4, |
| "pre-miRNA": 19, |
| "psi RNA packaging signal": 2, |
| "rRNA": 67, |
| "regulatory ncRNA": 1, |
| "riboswitch": 22, |
| "ribozyme": 30, |
| "s2m RNA": 1, |
| "salivarius-1 RNA": 1, |
| "short structured RNA": 43, |
| "snRNA": 16, |
| "structured RNA": 127, |
| "structured hairpin RNA": 40, |
| "tRNA": 112, |
| "telomerase RNA": 21, |
| "tmRNA": 2, |
| "tracrRNA": 1, |
| "type-P1 twister ribozyme": 2, |
| "viral packaging signal": 4, |
| "viral regulatory RNA": 105 |
| }, |
| "sample_dynamic_targets_rows": 882, |
| "samples": 882, |
| "trajectory_policy": "all entries are completed 100 ns MD simulations; primary public trajectory product is RNA-only 100 ps XTC; raw full-system TRR remains in the server archive and is deferred from v1 public downloads", |
| "unique_pdb_ids": 882, |
| "visualization_policy": "sample-level RNA dynamics previews use existing PBC-fixed MP4 when available, with GIF fallback" |
| } |
|
|
