preprocess_3D_to_2D/README.md

Step 1: Normalization 3D images

CT, [-175, 250] for abdomen, [-1000, 500] for chest:

python normalize_CT.py --test_data_path $YOUR_3D_IMAGE_PATH --save_path $YOUR_PATH_SAVE_NORMALIZE_DATA --a_min -175 --a_max 250

MRI:

python normalize_MRI.py --test_data_path $YOUR_3D_IMAGE_PATH --save_path $YOUR_PATH_SAVE_NORMALIZE_DATA

Step 2: pre_process slices

You need to modify the your own label keys in preprocess_2D_slices.py

python preprocess_2D_slices.py