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feat: OpenAlex snapshot with source .jsonl.gz and extracted parquet relationships

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  1. .gitattributes +2 -0
  2. .githooks/pre-commit +51 -0
  3. .gitignore +14 -0
  4. README.md +1603 -0
  5. data/authors/concepts/authors__updated_date=2016-06-24__part_000.parquet +3 -0
  6. data/authors/concepts/authors__updated_date=2016-06-24__part_0000.parquet +3 -0
  7. data/authors/concepts/authors__updated_date=2016-07-22__part_000.parquet +3 -0
  8. data/authors/concepts/authors__updated_date=2016-08-23__part_000.parquet +3 -0
  9. data/authors/concepts/authors__updated_date=2016-08-23__part_0000.parquet +3 -0
  10. data/authors/concepts/authors__updated_date=2016-09-16__part_000.parquet +3 -0
  11. data/authors/concepts/authors__updated_date=2016-09-16__part_0000.parquet +3 -0
  12. data/authors/concepts/authors__updated_date=2016-10-07__part_000.parquet +3 -0
  13. data/authors/concepts/authors__updated_date=2016-10-14__part_000.parquet +3 -0
  14. data/authors/concepts/authors__updated_date=2016-10-21__part_000.parquet +3 -0
  15. data/authors/concepts/authors__updated_date=2016-11-30__part_000.parquet +3 -0
  16. data/authors/concepts/authors__updated_date=2016-11-30__part_0000.parquet +3 -0
  17. data/authors/concepts/authors__updated_date=2016-12-08__part_000.parquet +3 -0
  18. data/authors/concepts/authors__updated_date=2016-12-08__part_0000.parquet +3 -0
  19. data/authors/concepts/authors__updated_date=2017-01-06__part_000.parquet +3 -0
  20. data/authors/concepts/authors__updated_date=2017-01-13__part_000.parquet +3 -0
  21. data/authors/concepts/authors__updated_date=2017-01-26__part_000.parquet +3 -0
  22. data/authors/concepts/authors__updated_date=2017-01-26__part_0000.parquet +3 -0
  23. data/authors/concepts/authors__updated_date=2017-02-03__part_000.parquet +3 -0
  24. data/authors/concepts/authors__updated_date=2017-02-10__part_000.parquet +3 -0
  25. data/authors/concepts/authors__updated_date=2017-02-17__part_000.parquet +3 -0
  26. data/authors/concepts/authors__updated_date=2017-02-17__part_0000.parquet +3 -0
  27. data/authors/concepts/authors__updated_date=2017-03-16__part_000.parquet +3 -0
  28. data/authors/concepts/authors__updated_date=2017-03-16__part_0000.parquet +3 -0
  29. data/authors/concepts/authors__updated_date=2017-03-23__part_000.parquet +3 -0
  30. data/authors/concepts/authors__updated_date=2017-04-14__part_000.parquet +3 -0
  31. data/authors/concepts/authors__updated_date=2017-04-28__part_000.parquet +3 -0
  32. data/authors/concepts/authors__updated_date=2017-05-05__part_000.parquet +3 -0
  33. data/authors/concepts/authors__updated_date=2017-05-05__part_0000.parquet +3 -0
  34. data/authors/concepts/authors__updated_date=2017-05-12__part_000.parquet +3 -0
  35. data/authors/concepts/authors__updated_date=2017-05-12__part_0000.parquet +3 -0
  36. data/authors/concepts/authors__updated_date=2017-05-19__part_000.parquet +3 -0
  37. data/authors/concepts/authors__updated_date=2017-06-05__part_000.parquet +3 -0
  38. data/authors/concepts/authors__updated_date=2017-06-05__part_0000.parquet +3 -0
  39. data/authors/concepts/authors__updated_date=2017-06-23__part_000.parquet +3 -0
  40. data/authors/concepts/authors__updated_date=2017-06-23__part_0000.parquet +3 -0
  41. data/authors/concepts/authors__updated_date=2017-06-30__part_000.parquet +3 -0
  42. data/authors/concepts/authors__updated_date=2017-06-30__part_0000.parquet +3 -0
  43. data/authors/concepts/authors__updated_date=2017-07-14__part_000.parquet +3 -0
  44. data/authors/concepts/authors__updated_date=2017-07-31__part_000.parquet +3 -0
  45. data/authors/concepts/authors__updated_date=2017-08-31__part_000.parquet +3 -0
  46. data/authors/concepts/authors__updated_date=2017-08-31__part_0000.parquet +3 -0
  47. data/authors/concepts/authors__updated_date=2017-09-15__part_000.parquet +3 -0
  48. data/authors/concepts/authors__updated_date=2017-09-15__part_0000.parquet +3 -0
  49. data/authors/concepts/authors__updated_date=2017-10-06__part_000.parquet +3 -0
  50. data/authors/concepts/authors__updated_date=2017-10-20__part_000.parquet +3 -0
.gitattributes ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ *.jsonl.gz filter=lfs diff=lfs merge=lfs -text
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+ *.parquet filter=lfs diff=lfs merge=lfs -text
.githooks/pre-commit ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ #!/usr/bin/env bash
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+ # Pre-commit hook: validate README.md YAML frontmatter for HuggingFace dataset card.
3
+ # Ensures required fields are present and non-empty.
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+
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+ set -euo pipefail
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+
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+ README="README.md"
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+
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+ if [ ! -f "$README" ]; then
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+ echo "Error: $README not found"
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+ exit 1
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+ fi
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+
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+ # Extract YAML frontmatter (between opening and closing ---)
15
+ frontmatter=$(awk '/^---$/{n++; next} n==1{print} n==2{exit}' "$README")
16
+
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+ if [ -z "$frontmatter" ]; then
18
+ echo "Error: $README has no YAML frontmatter (must start with ---)"
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+ exit 1
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+ fi
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+
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+ # Required fields per HuggingFace dataset card spec
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+ required_fields=(
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+ "license"
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+ "task_categories"
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+ "size_categories"
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+ )
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+
29
+ errors=0
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+ for field in "${required_fields[@]}"; do
31
+ if ! echo "$frontmatter" | grep -q "^${field}:"; then
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+ echo "Error: $README missing required field '$field'"
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+ errors=$((errors + 1))
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+ else
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+ # Check the value isn't empty — either inline or as a YAML list on the next line
36
+ inline_value=$(echo "$frontmatter" | grep "^${field}:" | sed "s/^${field}://" | sed 's/^[[:space:]]*//')
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+ if [ -z "$inline_value" ]; then
38
+ # Value might be a multi-line list; check the next line starts with -
39
+ if ! echo "$frontmatter" | grep -A1 "^${field}:" | tail -1 | grep -q '^- '; then
40
+ echo "Error: $README field '$field' is empty"
41
+ errors=$((errors + 1))
42
+ fi
43
+ fi
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+ fi
45
+ done
46
+
47
+ if [ "$errors" -gt 0 ]; then
48
+ echo ""
49
+ echo "See https://huggingface.co/docs/hub/datasets-cards#yaml-metadata"
50
+ exit 1
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+ fi
.gitignore ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # Python
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+ __pycache__/
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+ *.pyc
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+ sync/__pycache__/
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+
6
+ # Provenance (replaced by direct parquet shard existence checks)
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+ _units/
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+
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+ # Staging
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+ .hf_synced/
11
+
12
+ # macOS
13
+ .DS_Store
14
+ ._*
README.md ADDED
@@ -0,0 +1,1603 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc0-1.0
3
+ papers:
4
+ - https://arxiv.org/abs/2205.01833
5
+ annotations_creators:
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+ - found
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+ - machine-generated
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+ language_creators:
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+ - found
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+ language:
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+ - en
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+ - mul
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+ pretty_name: OpenAlex Snapshot
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+ tags:
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+ - academic
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+ - scholarly-metadata
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+ - citation-data
18
+ - bibliometrics
19
+ - open-science
20
+ - tabular
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+ size_categories:
22
+ - n>1T
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+ source_datasets:
24
+ - original
25
+ task_categories:
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+ - tabular-classification
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+ - feature-extraction
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+ data_files: data/works/**/*.jsonl.gz
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+ default: true
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+ data_dir: authors/name_alternatives
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+ - config_name: works_abstracts
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+ data_dir: works/abstracts
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+ - name: work_id
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+ - name: abstract_inverted_index
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+ - config_name: works_authorship_institutions
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+ data_dir: works/authorship_institutions
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+ data_dir: works/authorships
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+ - config_name: works_awards
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+ data_dir: works/awards
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+ num_shards: 2127
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+ data_dir: works/corresponding_authors
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+ - name: author_id
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+ num_rows: 293212905
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+ num_rows: 181632080
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+ - name: version
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+ - config_name: works_mesh
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+ data_dir: works/mesh
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+ - name: descriptor_ui
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+ - name: descriptor_name
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+ - name: qualifier_ui
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+ - name: qualifier_name
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+ - config_name: works_references
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+ data_dir: works/references
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+ - name: referenced_work_id
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+ num_shards: 2127
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+ - config_name: works_related
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+ data_dir: works/related
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+ features:
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+ - name: work_id
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+ dtype: int64
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+ - name: related_work_id
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+ dtype: int64
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+ num_rows: 2598276518
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+ num_shards: 2127
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+ - config_name: works_sdgs
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+ data_dir: works/sdgs
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+ features:
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+ - name: work_id
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+ dtype: int64
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+ - name: sdg_id
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+ dtype: int64
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+ - name: score
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+ dtype: float32
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+ num_rows: 174402726
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+ num_shards: 2127
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+ - config_name: works_topics
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+ data_dir: works/topics
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+ features:
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+ - name: work_id
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+ - name: topic_id
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+ - name: score
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+ num_rows: 1007532780
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+ num_shards: 2127
1537
+ ---
1538
+
1539
+ # OpenAlex Snapshot
1540
+
1541
+ Mirror of the [OpenAlex](https://openalex.org) scholarly metadata snapshot — a free, open catalogue of 250M+ scholarly works, 100M+ authors, and related entities.
1542
+
1543
+ Hosted on [HuggingFace](https://huggingface.co/datasets/Mearman/OpenAlex) via [Xet](https://xetdata.com) for content-addressable deduplication.
1544
+
1545
+ **Source**: [s3://openalex](https://openalex.s3.amazonaws.com/) (public, anonymous S3 bucket)
1546
+
1547
+ ## Dataset subsets
1548
+
1549
+ Each entity type is a separate subset (config):
1550
+
1551
+ | Config | Description | Shards |
1552
+ |--------|-------------|--------|
1553
+ | `works` | Scholarly works (papers, datasets, etc.) | 2,127 |
1554
+ | `authors` | Authors of scholarly works | 738 |
1555
+ | `institutions` | Universities, research orgs | 61 |
1556
+ | `publishers` | Academic publishers | 51 |
1557
+ | `sources` | Journals, repositories, conferences | 42 |
1558
+ | `awards` | Grant/funding awards | 20 |
1559
+ | `concepts` | Legacy concept taxonomy (Wikidata) | 3 |
1560
+ | `topics` | Topic taxonomy | 1 |
1561
+ | `domains` | Top-level topic domains | 1 |
1562
+ | `fields` | Topic fields | 1 |
1563
+ | `subfields` | Topic subfields | 1 |
1564
+ | `funders` | Funding organisations | 1 |
1565
+
1566
+ ## Data format
1567
+
1568
+ Each shard is a gzip-compressed JSON Lines file at:
1569
+
1570
+ ```
1571
+ data/{entity}/updated_date=YYYY-MM-DD/part_XXXX.jsonl.gz
1572
+ ```
1573
+
1574
+ The `.jsonl.gz` extension allows the HuggingFace dataset viewer to detect the inner format automatically. On S3, files are named `part_XXXX.gz`; the download pipeline renames them on save.
1575
+
1576
+ Each line is a JSON object representing one entity record. Fields vary by entity type. See the [OpenAlex data model](https://docs.openalex.org/) for field definitions.
1577
+
1578
+ ### Example: Work record fields
1579
+
1580
+ `id`, `doi`, `title`, `display_name`, `publication_year`, `type`, `language`, `authorships`, `concepts`, `topics`, `keywords`, `cited_by_count`, `referenced_works`, `related_works`, `locations`, `open_access`, `funders`, `awards`, `mesh`, `sustainable_development_goals`, `counts_by_year`, `updated_date`, and more.
1581
+
1582
+ ## Sync and extraction pipeline
1583
+
1584
+ The `sync/` directory contains a Python pipeline for downloading from S3 and extracting relationship tables to Parquet:
1585
+
1586
+ 1. **Download**: `python3 -m sync.download sync [--entity X]` — syncs from `s3://openalex` (public, anonymous)
1587
+ 2. **Extract**: `python3 -m sync.extract extract [--entity X] --workers 6` — converts `.jsonl.gz` to nested parquet sub-tables
1588
+
1589
+ Extraction supports `--slice-index N --slice-total M` to partition work across machines.
1590
+
1591
+ ## Adding new entity types
1592
+
1593
+ OpenAlex occasionally adds new entities. To support a new one:
1594
+
1595
+ 1. **Download**: `python3 -m sync.download sync --entity {entity}`
1596
+ 2. **Schema**: Add entity + relationship schemas to `sync/schemas.py`
1597
+ 3. **Extraction**: Add dispatch entry to `_ENTITY_DISPATCH` in `sync/extract.py`
1598
+ 4. **Nesting**: Add singular→plural entry to `_ENTITY_SINGULAR_TO_PLURAL` in `sync/common.py`
1599
+ 5. **Commit**: Stage and push
1600
+
1601
+ ## License
1602
+
1603
+ OpenAlex data is released under [CC0 1.0 Universal](https://creativecommons.org/publicdomain/zero/1.0/). See the [OpenAlex terms](https://docs.openalex.org/about/the-data) for details.
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