Datasets:

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MurrellLab

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ProteinChains

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The Murrell Lab, KI 4

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 39 new columns ({'atom_co_rel', 'gene_taxid', 'pairedcys_ratio', 'max_temp', 'min_temp', 'protein_type', 'interchain_atom_prop', 'coil_count', 'length', 'max_pairwise_distance', 'cys_prop', 'sheet_count', 'num_cys', 'chain_index', 'host_superkingdom', 'host_class', 'co_10_0', 'interchain_residue_prop', 'co_6_0', 'file', 'radius_of_gyration_over_cube_root_length', 'atom_co_abs', 'helix_proportion', 'sheet_proportion', 'has_similar', 'radius_of_gyration', 'num_paired', 'helix_count', 'mean_pairwise_distance', 'contact_order_over_sqrt_length', 'locus', 'host_taxid', 'gene_class', 'subclass', 'chain_id', 'interchain_contact_count', 'avg_temp', 'scTM', 'gene_superkingdom'}) and 1 missing columns ({'method'}).

This happened while the csv dataset builder was generating data using

hf://datasets/MurrellLab/ProteinChains/pdb-table.csv (at revision 4fe8bedfee5c2ed98590bc2627135a17ca390d8d)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              pdb_id: string
              chain_id: string
              length: int64
              coil_count: int64
              helix_count: int64
              sheet_count: int64
              gene_taxid: double
              host_taxid: double
              max_temp: double
              min_temp: double
              avg_temp: double
              protein_type: string
              locus: string
              subclass: string
              gene_superkingdom: string
              host_superkingdom: string
              gene_class: string
              host_class: string
              file: string
              chain_index: int64
              interchain_contact_count: int64
              interchain_residue_prop: double
              interchain_atom_prop: double
              atom_co_abs: double
              atom_co_rel: double
              co_6_0: double
              co_10_0: double
              radius_of_gyration: double
              mean_pairwise_distance: double
              max_pairwise_distance: double
              num_paired: int64
              num_cys: int64
              scTM: double
              contact_order_over_sqrt_length: double
              radius_of_gyration_over_cube_root_length: double
              helix_proportion: double
              sheet_proportion: double
              cys_prop: double
              pairedcys_ratio: double
              has_similar: bool
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 5275
              to
              {'pdb_id': Value('string'), 'method': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1334, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 911, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 39 new columns ({'atom_co_rel', 'gene_taxid', 'pairedcys_ratio', 'max_temp', 'min_temp', 'protein_type', 'interchain_atom_prop', 'coil_count', 'length', 'max_pairwise_distance', 'cys_prop', 'sheet_count', 'num_cys', 'chain_index', 'host_superkingdom', 'host_class', 'co_10_0', 'interchain_residue_prop', 'co_6_0', 'file', 'radius_of_gyration_over_cube_root_length', 'atom_co_abs', 'helix_proportion', 'sheet_proportion', 'has_similar', 'radius_of_gyration', 'num_paired', 'helix_count', 'mean_pairwise_distance', 'contact_order_over_sqrt_length', 'locus', 'host_taxid', 'gene_class', 'subclass', 'chain_id', 'interchain_contact_count', 'avg_temp', 'scTM', 'gene_superkingdom'}) and 1 missing columns ({'method'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/MurrellLab/ProteinChains/pdb-table.csv (at revision 4fe8bedfee5c2ed98590bc2627135a17ca390d8d)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)