HRCSData / README.md
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---
license: mit
task_categories:
- text-classification
tags:
- medical
- biology
---
## Data Selection & Splitting
* **Source:** HRCS 2014, 2018, and 2022 direct award datasets.
* **Quality Filtering:**
* Only **human-coded** abstracts were included.
* Records with abstracts shorter than **75 characters** were removed during preprocessing to ensure the model had sufficient text to learn from.
* **Train/Test Split:** The **Test Set** was isolated using only **2022 data** to provide a modern performance benchmark.
---
## Training Data Deduplication
To prevent the model from over-fitting on near-identical entries, a robust deduplication pipeline was implemented:
1. **Vectorization:** Character-level **TF-IDF vectors** were generated from training titles using word-boundary character n-grams (length 3–5).
2. **Similarity Analysis:** Near-duplicate titles were identified using a **Cosine Similarity threshold of more than or equal to 0.85**.
3. **Clustering:** Records exceeding this threshold were grouped using a **connected-components graph algorithm**.
4. **Selection:** Only the first occurrence in file order from each group was retained in the training pool.
---
## Leakage Prevention (Train vs. Test)
To ensure the test set provides a truly unseen and honest evaluation, the following steps were taken:
* **Shared Feature Space:** The TF-IDF vectorizer was fit on the **combined** set of training and test titles.
* **Cross-Set Comparison:** Any training record with a **Cosine Similarity threshold of more than or equal to 0.85** to any record in the test set was permanently removed from the training pool.
* **Test Set Integrity:** The test set itself was deduplicated using **exact title matching only** (no fuzzy matching applied).
> [!IMPORTANT]
> **Limitation:** Short, highly generic grant titles (e.g., *"Studentship"*) may have been deduplicated in the training set due to the similarity threshold.