File size: 3,029 Bytes
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description: Vector database of single-cell python packages.
type: vector_db
parameters:
embedding_model: text-embedding-3-large
chunk_size: 4000
chunk_overlap: 200
items:
scanpy:
type: package documentation
url: https://scanpy.readthedocs.io/en/stable/index.html
anndata:
type: package documentation
url: https://anndata.readthedocs.io/en/latest/
scvi-tools:
type: package documentation
url: https://docs.scvi-tools.org/en/stable/
squidpy:
type: package documentation
url: https://squidpy.readthedocs.io/en/stable/
dynamo:
type: package documentation
url: https://dynamo-release.readthedocs.io/en/latest/
CellphoneDB:
type: package documentation
url: https://cellphonedb.readthedocs.io/en/latest/
omicverse:
type: package documentation
url: https://starlitnightly.github.io/omicverse/
spateo:
type: package documentation
url: https://spateo-release.readthedocs.io/en/latest/
spatialdata:
type: package documentation
url: https://spatialdata.scverse.org/en/latest/
muon:
type: package documentation
url: https://muon.readthedocs.io/en/latest/
mudata:
type: package documentation
url: https://mudata.readthedocs.io/en/latest/
scirpy:
type: package documentation
url: https://scirpy.scverse.org/en/latest/
scvelo:
type: package documentation
url: https://scvelo.readthedocs.io/en/stable/
pydeseq2:
type: package documentation
url: https://pydeseq2.readthedocs.io/en/latest/
CellOracle:
type: package documentation
url: https://morris-lab.github.io/CellOracle.documentation/
Moscot:
type: package documentation
url: https://moscot.readthedocs.io/en/latest/
liana:
type: package documentation
url: https://liana-py.readthedocs.io/en/latest/
sopa:
type: package documentation
url: https://gustaveroussy.github.io/sopa/
tangram:
type: package documentation
url: https://tangram-sc.readthedocs.io/en/latest/index.html
cellxgene-census:
type: package documentation
url: https://chanzuckerberg.github.io/cellxgene-census/index.html
cellrank:
type: package documentation
url: https://cellrank.readthedocs.io/en/latest/
bento-tools:
type: package documentation
url: https://bento-tools.readthedocs.io/en/latest/index.html
hotspotsc:
type: package documentation
url: https://hotspot.readthedocs.io/en/latest/index.html
Palantir:
type: package documentation
url: https://palantir.readthedocs.io/en/latest/
pertpy:
type: package documentation
url: https://pertpy.readthedocs.io/en/latest/
cell2location:
type: package documentation
url: https://pertpy.readthedocs.io/en/stable/
snapatac2:
type: package documentation
url: https://kzhang.org/SnapATAC2/index.html
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