code stringlengths 1 2.01M | repo_name stringlengths 3 62 | path stringlengths 1 267 | language stringclasses 231
values | license stringclasses 13
values | size int64 1 2.01M |
|---|---|---|---|---|---|
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/BashCallableCommand.groovy | Groovy | bsd | 3,211 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/GridgainProvider.groovy | Groovy | bsd | 3,331 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/ProbeCommandExecutor.java | Java | bsd | 2,029 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, ... | zxd06407-bpipe | src/main/groovy/bpipe/executor/TorqueCommandExecutor.groovy | Groovy | bsd | 3,339 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/GridgainCommandExecutor.groovy | Groovy | bsd | 3,826 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/ExecutorServiceProvider.groovy | Groovy | bsd | 1,699 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/HazelcastCommandExecutor.groovy | Groovy | bsd | 4,128 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/executor/LsfCommandExecutor.groovy | Groovy | bsd | 9,517 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/executor/BashResult.groovy | Groovy | bsd | 1,932 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, ... | zxd06407-bpipe | src/main/groovy/bpipe/Forwarder.groovy | Groovy | bsd | 4,073 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/ToolDatabase.groovy | Groovy | bsd | 6,393 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/PipelineContext.groovy | Groovy | bsd | 63,885 |
/*
* Copyright (c) 2013 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/FastUtils.java | Java | bsd | 2,295 |
package bpipe
import groovy.util.ConfigObject;
import groovy.util.logging.Log;
/**
* Global configuration properties for Bpipe.
*
* @author simon.sadedin@mcri.edu.au
*/
@Log
class Config {
/**
* Lower level configuration values. These are not directly user
* exposed.
*/
static Map<String,Objec... | zxd06407-bpipe | src/main/groovy/bpipe/Config.groovy | Groovy | bsd | 4,149 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/SMTPNotificationChannel.groovy | Groovy | bsd | 3,798 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/ParameterizedClosure.groovy | Groovy | bsd | 2,331 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/NotificationManager.groovy | Groovy | bsd | 6,405 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, ... | zxd06407-bpipe | src/main/groovy/bpipe/ForwardHost.groovy | Groovy | bsd | 1,794 |
package bpipe;
/**
* Possible values for Jobs that Bpipe is running
*
* @author simon.sadedin@mcri.edu.au
*/
public enum CommandStatus {
QUEUEING,
RUNNING,
COMPLETE,
UNKNOWN
}
| zxd06407-bpipe | src/main/groovy/bpipe/CommandStatus.java | Java | bsd | 200 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/Pipeline.groovy | Groovy | bsd | 27,681 |
/*
* Copyright (c) 2011 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/CommandId.groovy | Groovy | bsd | 2,521 |
package bpipe
import groovy.lang.IntRange
import java.io.Serializable;
/**
* Extends the normal Integer Range class to make it serializable
*/
class GenomicRange implements Serializable {
private static final long serialVersionUID = 1L;
int from
int to
/**
... | zxd06407-bpipe | src/main/groovy/bpipe/GenomicRange.groovy | Groovy | bsd | 716 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright... | zxd06407-bpipe | src/main/groovy/bpipe/Runner.groovy | Groovy | bsd | 23,720 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright... | zxd06407-bpipe | src/main/groovy/bpipe/Dependencies.groovy | Groovy | bsd | 33,794 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright... | zxd06407-bpipe | src/main/groovy/bpipe/PipelineOutput.groovy | Groovy | bsd | 9,580 |
package bpipe
import groovy.util.logging.Log;
import java.util.regex.Matcher;
/**
* Implements logic for splitting input files into groups by sample using simple
* wildcard patterns. The goal is to provide a simpler way for people to specify
* how file names are related to sample names than asking people to eithe... | zxd06407-bpipe | src/main/groovy/bpipe/InputSplitter.groovy | Groovy | bsd | 7,947 |
package bpipe
import groovy.util.logging.Log;
@Log
class CommandLog {
static FileWriter writer = new FileWriter("commandlog.txt", true)
static CommandLog cmdLog = new CommandLog()
/**
* Write a line to the command log.
*/
synchronized void write(String line) {
writer.p... | zxd06407-bpipe | src/main/groovy/bpipe/CommandLog.groovy | Groovy | bsd | 429 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/DefinePipelineCategory.groovy | Groovy | bsd | 5,236 |
package bpipe;
import java.util.Map;
public interface PipelineEventListener {
void onEvent(PipelineEvent eventType, String desc, Map<String, Object> details);
}
| zxd06407-bpipe | src/main/groovy/bpipe/PipelineEventListener.java | Java | bsd | 176 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/EventManager.groovy | Groovy | bsd | 3,111 |
/*
* Copyright (c) 2012 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, pu... | zxd06407-bpipe | src/main/groovy/bpipe/XMPPNotificationChannel.groovy | Groovy | bsd | 4,491 |
package bpipe;
/**
* Events that can occur during execution of a pipeline.
* Used by NotificationChannel to allow notifications to appear
* for particular events.
*
* @author ssadedin
*/
public enum PipelineEvent {
/**
* Supported
*/
STARTED,
/**
* Supported
*/
FINISHED,
/**... | zxd06407-bpipe | src/main/groovy/bpipe/PipelineEvent.java | Java | bsd | 666 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeProduceASTTransformation.groovy | Groovy | bsd | 1,802 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipePreserveASTTransformation.groovy | Groovy | bsd | 2,250 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeIntermediateASTTransformation.groovy | Groovy | bsd | 2,262 |
package bpipe.ast
import org.codehaus.groovy.control.CompilePhase;
import org.codehaus.groovy.transform.GroovyASTTransformation;
@GroovyASTTransformation(phase = CompilePhase.SEMANTIC_ANALYSIS)
class BpipeFilterASTTransformation extends BpipeASTTransformation {
public BpipeFilterASTTransformation() {
... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeFilterASTTransformation.groovy | Groovy | bsd | 346 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeAccompaniesASTTransformation.groovy | Groovy | bsd | 2,449 |
package bpipe.ast
import org.codehaus.groovy.ast.ASTNode;
import org.codehaus.groovy.ast.AnnotationNode;
import org.codehaus.groovy.ast.ClassHelper;
import org.codehaus.groovy.ast.ClassNode;
import org.codehaus.groovy.ast.Parameter;
import org.codehaus.groovy.ast.VariableScope;
import org.codehaus.groovy.ast.builder.As... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeASTTransformation.groovy | Groovy | bsd | 9,454 |
package bpipe.ast
import org.codehaus.groovy.control.CompilePhase;
import org.codehaus.groovy.transform.GroovyASTTransformation;
@GroovyASTTransformation(phase = CompilePhase.SEMANTIC_ANALYSIS)
class BpipeTransformASTTransformation extends BpipeASTTransformation {
public BpipeTransformASTTransformation() {
... | zxd06407-bpipe | src/main/groovy/bpipe/ast/BpipeTransformASTTransformation.groovy | Groovy | bsd | 354 |
package bpipe.ast
import groovy.util.logging.Log;
import org.codehaus.groovy.ast.ASTNode;
import org.codehaus.groovy.ast.expr.BinaryExpression;
import org.codehaus.groovy.ast.expr.ClosureExpression;
import org.codehaus.groovy.ast.expr.PropertyExpression;
import org.codehaus.groovy.ast.stmt.BlockStatement;
import org.... | zxd06407-bpipe | src/main/groovy/bpipe/ast/ASTDumper.groovy | Groovy | bsd | 1,007 |
/*
* Copyright (c) 2011 MCRI, authors
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, ... | zxd06407-bpipe | src/main/groovy/bpipe/PatternInputMissingError.groovy | Groovy | bsd | 1,636 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright... | zxd06407-bpipe | src/main/groovy/bpipe/PipelineTestAbort.java | Java | bsd | 1,875 |
package bpipe
import java.util.zip.GZIPInputStream;
import groovy.util.logging.Log;
@Log
class RegionSet implements Serializable {
private static final long serialVersionUID = 1L;
/**
* Optional configuration object - this is not used in RegionSet, however
* it's used in Chr ... | zxd06407-bpipe | src/main/groovy/bpipe/RegionSet.groovy | Groovy | bsd | 10,468 |
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import org.codehaus.groovy.transform.GroovyASTTransformationClass;
/**
* Annotation to indicate that a pipeline stage transforms an input
* to a file type ... | zxd06407-bpipe | src/main/groovy/Filter.groovy | Groovy | bsd | 540 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/Intermediate.groovy | Groovy | bsd | 1,972 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/Accompanies.groovy | Groovy | bsd | 1,970 |
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import org.codehaus.groovy.transform.GroovyASTTransformationClass;
/**
* Annotation to indicate that a pipeline stage transforms an input
* to a file type ... | zxd06407-bpipe | src/main/groovy/Transform.groovy | Groovy | bsd | 546 |
import bpipe.Pipeline;
/**
* A simple alias for Pipeline, in the default package so that the user
* does not need to import anything to access Bpipe
*
* @author simon
*/
class Bpipe extends Pipeline {
}
| zxd06407-bpipe | src/main/groovy/Bpipe.groovy | Groovy | bsd | 215 |
/*
* Copyright (c) Murdoch Childrens Research Institute and Contributers
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* Redistributions of source code must retain the above copyright n... | zxd06407-bpipe | src/main/groovy/Produce.groovy | Groovy | bsd | 1,931 |
//
// ----------- Example: Paired End Alignment
//
// Illustrates how to align paired end reads from eg. Illumina
// using BWA.
//
// Notes:
//
// 1. to run this example you need a human reference genome
// downloaded and indexed in ~/hg19/gatk.ucsc.hg19.fasta"
// or you can change the reference below to point t... | zxd06407-bpipe | examples/paired_end_alignment/pipeline.groovy | Groovy | bsd | 1,939 |
package y.p.newpro;
import android.app.Activity;
import android.os.Bundle;
public class NewproActivity extends Activity {
/** Called when the activity is first created. */
@Override
public void onCreate(Bundle savedInstanceState) {
super.onCreate(savedInstanceState);
setContentView(R.layou... | zzangmomo | newpro/src/y/p/newpro/NewproActivity.java | Java | asf20 | 336 |
package cn.nju.zyy.service;
import java.util.List;
import cn.nju.zyy.domain.Community;
import cn.nju.zyy.domain.Country;
import cn.nju.zyy.domain.User;
public interface UserService {
public void add(User user);
public List<Country> getAllCountries();
public List<Community> getAllCommunities();
}
... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/service/UserService.java | Java | asf20 | 321 |
package cn.nju.zyy.service;
import java.util.ArrayList;
import java.util.List;
import cn.nju.zyy.domain.Community;
import cn.nju.zyy.domain.Country;
import cn.nju.zyy.domain.User;
public class UserServiceImpl implements UserService {
@Override
public void add(User user) {
// Persist the user object... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/service/UserServiceImpl.java | Java | asf20 | 988 |
package cn.nju.zyy.domain;
public class Community {
private String key;
private String value;
public Community(String key, String value) {
this.key = key;
this.value = value;
}
public String getKey() {
return key;
}
public void setKey(String key) {
this.key = key;
}
public S... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/domain/Community.java | Java | asf20 | 434 |
package cn.nju.zyy.domain;
public class Country {
private int countryId;
private String countryName;
public Country(int countryId, String countryName) {
this.countryId = countryId;
this.countryName = countryName;
}
public int getCountryId() {
return countryId;
}
public void setCountr... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/domain/Country.java | Java | asf20 | 538 |
package cn.nju.zyy.dao;
import java.util.List;
import org.hibernate.SessionFactory;
import org.springframework.orm.hibernate3.HibernateTemplate;
import cn.nju.zyy.domain.User;
public class UserDAOImpl implements UserDAO {
private HibernateTemplate hibernateTemplate;
public void setSessionFactory(... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/dao/UserDAOImpl.java | Java | asf20 | 656 |
package cn.nju.zyy.dao;
import java.util.List;
import cn.nju.zyy.domain.User;
public interface UserDAO {
public void saveUser(User user);
public List<User> listUser();
}
| zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/dao/UserDAO.java | Java | asf20 | 190 |
package cn.nju.zyy.interceptor;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.log4j.BasicConfigurator;
import org.apache.log4j.Logger;
import org.springframework.web.servlet.ModelAndView;
import org.springframework.web.servlet.handler.HandlerInt... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/interceptor/LoggerInterceptor.java | Java | asf20 | 1,486 |
package cn.nju.zyy.controller;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.springframework.web.servlet.ModelAndView;
import org.springframework.web.servlet.mvc.AbstractController;
public class HelloWorldController extends AbstractController {
p... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/controller/HelloWorldController.java | Java | asf20 | 641 |
package cn.nju.zyy.controller;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.springframework.ui.ModelMap;
import org.springframework.web.servlet.ModelAndView;
import org.springframework.web.servlet.mvc.multiaction.MultiActionController;
import cn.nju... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/controller/UserController.java | Java | asf20 | 2,127 |
package cn.nju.zyy.validator;
import org.springframework.validation.Errors;
import org.springframework.validation.ValidationUtils;
import org.springframework.validation.Validator;
import cn.nju.zyy.domain.User;
public class UserValidator implements Validator {
@Override
public boolean supports(Class<?>... | zyy-spring-mvc-xml | trunk/src/cn/nju/zyy/validator/UserValidator.java | Java | asf20 | 1,031 |
<%@ page language="java" contentType="text/html; charset=UTF-8"
pageEncoding="UTF-8"%>
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Welcome Page</title>
</head>
... | zyy-spring-mvc-xml | trunk/WebContent/WEB-INF/jsp/welcomePage.jsp | Java Server Pages | asf20 | 373 |
<%@ page language="java" contentType="text/html; charset=UTF-8"
pageEncoding="UTF-8"%>
<%@ taglib prefix="c" uri="http://java.sun.com/jsp/jstl/core" %>
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="... | zyy-spring-mvc-xml | trunk/WebContent/WEB-INF/jsp/userSuccess.jsp | Java Server Pages | asf20 | 1,125 |
<%@ page language="java" contentType="text/html; charset=UTF-8"
pageEncoding="UTF-8"%>
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Item</title>
</head>
<body>
... | zyy-spring-mvc-xml | trunk/WebContent/WEB-INF/jsp/item.jsp | Java Server Pages | asf20 | 358 |
<%@ page language="java" contentType="text/html; charset=UTF-8"
pageEncoding="UTF-8"%>
<%@ taglib prefix="form" uri="http://www.springframework.org/tags/form" %>
<%@ taglib prefix="c" uri="http://java.sun.com/jsp/jstl/core" %>
<%@ taglib prefix="fn" uri="http://java.sun.com/jsp/jstl/functions" %>
<!DOCTYPE html... | zyy-spring-mvc-xml | trunk/WebContent/WEB-INF/jsp/userForm.jsp | Java Server Pages | asf20 | 2,809 |
<%@ page language="java" contentType="text/html; charset=UTF-8"
pageEncoding="UTF-8"%>
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Redirect</title>
</head>
<bod... | zyy-spring-mvc-xml | trunk/WebContent/redirect.jsp | Java Server Pages | asf20 | 433 |
package cn.nju.zyy.auction;
public class Address {
}
| zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/Address.java | Java | asf20 | 60 |
package cn.nju.zyy.auction;
import java.util.Collections;
import java.util.HashSet;
import java.util.Set;
public class Category {
private Long id;
private String name;
private Category parentCategory;
private Set childCategories = new HashSet();
private Set items = new HashSet();
public Long get... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/Category.java | Java | asf20 | 1,425 |
package cn.nju.zyy.auction;
import java.io.Serializable;
public class User implements Serializable {
private static final long serialVersionUID = 1L;
private String username;
private Address address;
public User() {
}
public String getUsername() {
return username;
}
public void setUse... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/User.java | Java | asf20 | 608 |
@org.hibernate.annotations.TypeDefs({
@org.hibernate.annotations.TypeDef(
name = "monetary_amount_usd",
typeClass = MonetaryAmountType.class,
parameters = {
@org.hibernate.annotations.Parameter(name="convertTo", value="USD")
}
),
@org.hibernate.annotations.TypeDef(
name = "monetary_amou... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/package-info.java | Java | asf20 | 696 |
package cn.nju.zyy.auction;
import java.util.Collections;
import java.util.HashSet;
import java.util.Set;
import javax.persistence.Entity;
import javax.persistence.Table;
@Entity
@Table(name = "ITEM")
@org.hibernate.annotations.BatchSize(size = 10)
@org.hibernate.annotations.DiscriminatorFormula("case wh... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/Item.java | Java | asf20 | 1,159 |
package cn.nju.zyy.auction;
public class MonetaryAmountType {
}
| zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/auction/MonetaryAmountType.java | Java | asf20 | 71 |
package cn.nju.zyy.hello;
import java.util.Iterator;
import java.util.List;
import javax.persistence.EntityManager;
import org.hibernate.Session;
import org.hibernate.Transaction;
import org.hibernate.ejb.HibernateEntityManager;
import cn.nju.zyy.persistence.JPAUtil;
public class HibernateStyleHelloWo... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/hello/HibernateStyleHelloWorld.java | Java | asf20 | 1,099 |
package cn.nju.zyy.hello;
import java.util.Iterator;
import java.util.List;
import javax.persistence.EntityManager;
import javax.persistence.EntityTransaction;
import cn.nju.zyy.persistence.JPAUtil;
public class HelloWorld {
public static void main(String[] args) {
// First unit of work
EntityMa... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/hello/HelloWorld.java | Java | asf20 | 1,249 |
package cn.nju.zyy.persistence;
import javax.persistence.EntityManagerFactory;
import javax.persistence.Persistence;
import org.hibernate.ejb.Ejb3Configuration;
public class JPAUtil {
private static final EntityManagerFactory emf;
static {
try {
emf = Persistence.createEntityManagerFactory("he... | zyy-hibernate-jpa-demo | trunk/src/cn/nju/zyy/persistence/JPAUtil.java | Java | asf20 | 632 |
/*
* Copyright 2002-2011 the original author or authors.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by ap... | zyy-test-test | trunk/zyy/src/org/springframework/http/converter/StringHttpMessageConverter.java | Java | asf20 | 3,804 |
package com.chiao.service.admin;
import com.chiao.dao.admin.EmployeeDao;
import com.chiao.entity.admin.Employee;
import java.util.List;
import java.util.Map;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
@Service
public class EmployeeService {
... | zyy-test-test | trunk/zyy/src/com/chiao/service/admin/EmployeeService.java | Java | asf20 | 1,263 |
package com.chiao.service.admin;
import java.util.List;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
import com.chiao.dao.admin.RoleDao;
import com.chiao.entity.admin.Role;
@Service
public class RoleService {
@Autowired RoleDao roleDao;... | zyy-test-test | trunk/zyy/src/com/chiao/service/admin/RoleService.java | Java | asf20 | 609 |
package com.chiao.service.admin;
import java.util.List;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
import com.chiao.dao.admin.LoginDao;
import com.chiao.entity.admin.Action;
@Service
public class LoginService {
@Autowired
LoginDao d... | zyy-test-test | trunk/zyy/src/com/chiao/service/admin/LoginService.java | Java | asf20 | 660 |
package com.chiao.service.admin;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
import com.chiao.core.ExtNode;
import com.... | zyy-test-test | trunk/zyy/src/com/chiao/service/admin/DeptService.java | Java | asf20 | 1,817 |
package com.chiao.service.core;
import java.util.HashMap;
import java.util.Map;
import javax.mail.MessagingException;
import javax.mail.internet.MimeMessage;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.task.TaskExecutor;
import org.springframework.mail.jav... | zyy-test-test | trunk/zyy/src/com/chiao/service/core/MailService.java | Java | asf20 | 2,504 |
package com.chiao.entity.admin;
import java.util.List;
public class ExtGrid<T> {
private boolean success;
private List<T> items;
public boolean isSuccess() {
return success;
}
public void setSuccess(boolean success) {
this.success = success;
}
public List<T> getItems() {
return items;
... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/ExtGrid.java | Java | asf20 | 404 |
package com.chiao.entity.admin;
public class Role {
private int roleid;
private String rolename;
private String roledesc;
private int sortno;
public int getRoleid() {
return roleid;
}
public void setRoleid(int roleid) {
this.roleid = roleid;
}
public String getRolename() {
return role... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/Role.java | Java | asf20 | 668 |
package com.chiao.entity.admin;
public class Action {
private int id;
private int nodeid;
private String opt;
private String arg;
private int delay;
private int enable;
private int profilesid;
private int visibility;
public int getId() {
return id;
}
public void setId(int id) {
... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/Action.java | Java | asf20 | 1,204 |
package com.chiao.entity.admin;
public class DDNS {
private String userName;
private String passWord;
private String domain;
public String getUserName() {
return userName;
}
public void setUserName(String userName) {
this.userName = userName;
}
public String getPassWord() {
return ... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/DDNS.java | Java | asf20 | 546 |
package com.chiao.entity.admin;
public class Employee {
private int empid;
private String empno;
private String empname;
private String emppass;
private int sex;
private String tel;
private String idcard;
private String birthday;
private String address;
private String headpic;
private boolean... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/Employee.java | Java | asf20 | 2,042 |
package com.chiao.entity.admin;
public class Dept {
private int deptid;
private int pid;
private int sortno;
private String deptname;
private String pname;
public int getDeptid() {
return deptid;
}
public void setDeptid(int deptid) {
this.deptid = deptid;
}
public int getPid() {
... | zyy-test-test | trunk/zyy/src/com/chiao/entity/admin/Dept.java | Java | asf20 | 780 |
package com.chiao.entity;
public class Member {
private String name;
private String email;
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getEmail() {
return email;
}
public void setEmail(String email) {
t... | zyy-test-test | trunk/zyy/src/com/chiao/entity/Member.java | Java | asf20 | 353 |
package com.chiao.dao.admin;
import java.util.List;
import org.springframework.stereotype.Repository;
import com.chiao.core.BaseDao;
import com.chiao.entity.admin.Role;
@Repository
public class RoleDao extends BaseDao{
private static final String LIST_ROLE_SQL="select * from role order by sortno";
... | zyy-test-test | trunk/zyy/src/com/chiao/dao/admin/RoleDao.java | Java | asf20 | 1,065 |
package com.chiao.dao.admin;
import java.util.List;
import java.util.Map;
import org.springframework.stereotype.Repository;
import com.chiao.core.BaseDao;
import com.chiao.core.CommonUtils;
import com.chiao.entity.admin.Employee;
@Repository
public class EmployeeDao extends BaseDao{
private static f... | zyy-test-test | trunk/zyy/src/com/chiao/dao/admin/EmployeeDao.java | Java | asf20 | 3,376 |
package com.chiao.dao.admin;
import java.util.List;
import java.util.Map;
import org.springframework.stereotype.Repository;
import com.chiao.core.BaseDao;
import com.chiao.entity.admin.Dept;
@Repository
public class DeptDao extends BaseDao{
private static final String LIST_DEPT_SQL="SELECT * FROM DEP... | zyy-test-test | trunk/zyy/src/com/chiao/dao/admin/DeptDao.java | Java | asf20 | 1,571 |
package com.chiao.dao.admin;
import java.util.List;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.jdbc.core.BeanPropertyRowMapper;
import org.springframework.jdbc.core.JdbcTemplate;
import org.springframework.stereotype.Repository;
import com.chiao.core.BaseDao;
... | zyy-test-test | trunk/zyy/src/com/chiao/dao/admin/LoginDao.java | Java | asf20 | 1,142 |
package com.chiao.dao.admin;
import org.springframework.stereotype.Repository;
import com.chiao.core.BaseDao;
@Repository
public class TestDao extends BaseDao {
public String getJson(){
return this.getJsonList("select * from dept").toString();
}
}
| zyy-test-test | trunk/zyy/src/com/chiao/dao/admin/TestDao.java | Java | asf20 | 272 |
package com.chiao.core;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.Iterator;
import java.util.List;
public class ExtNode {
/**
* 节点编号
*/
private Integer id;
/**
* 节点内容
*/
private String text;
/**
* 父节点编号
*/
private Inte... | zyy-test-test | trunk/zyy/src/com/chiao/core/ExtNode.java | Java | asf20 | 2,243 |
package com.chiao.core;
import java.util.List;
import java.util.Map;
public class ExtPageStore {
private int total;
private List<Map<String,Object>> items;
public int getTotal() {
return total;
}
public void setTotal(int total) {
this.total = total;
}
public List<Map<String, Object>> ge... | zyy-test-test | trunk/zyy/src/com/chiao/core/ExtPageStore.java | Java | asf20 | 446 |
package com.chiao.core;
import java.io.IOException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.springframework.dao.DataAccessException;
import org.springframewor... | zyy-test-test | trunk/zyy/src/com/chiao/core/BaseController.java | Java | asf20 | 3,124 |
package com.chiao.core;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.text.DecimalFormat;
import java.text.SimpleDateFormat;
im... | zyy-test-test | trunk/zyy/src/com/chiao/core/CommonUtils.java | Java | asf20 | 10,239 |
package com.chiao.core;
import javax.annotation.PostConstruct;
import javax.sql.DataSource;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Qualifier;
import org.springframework.jdbc.core.support.JdbcDaoSupport;
public abstract class AbsBase... | zyy-test-test | trunk/zyy/src/com/chiao/core/AbsBaseDao.java | Java | asf20 | 512 |
package com.chiao.core;
import java.sql.Connection;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.ResultSetMetaData;
import java.sql.SQLException;
import java.util.List;
import java.util.Map;
import net.sf.json.JSONArray;
import net.sf.json.JSONObject;
import org.springfr... | zyy-test-test | trunk/zyy/src/com/chiao/core/BaseDao.java | Java | asf20 | 6,849 |
package com.chiao.core;
import java.beans.PropertyEditorSupport;
import org.springframework.util.StringUtils;
public class IntEditor extends PropertyEditorSupport {
@Override
public String getAsText() {
return getValue().toString();
}
@Override
public void setAsText(String text) throws Illegal... | zyy-test-test | trunk/zyy/src/com/chiao/core/IntEditor.java | Java | asf20 | 518 |