The dataset viewer is not available for this split.
Error code: StreamingRowsError
Exception: ArrowInvalid
Message: JSON parse error: Invalid value. in row 0
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 324, in _generate_tables
df = pandas_read_json(f)
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 38, in pandas_read_json
return pd.read_json(path_or_buf, **kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 791, in read_json
json_reader = JsonReader(
path_or_buf,
...<16 lines>...
engine=engine,
)
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 905, in __init__
self.data = self._preprocess_data(data)
~~~~~~~~~~~~~~~~~~~~~^^^^^^
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 917, in _preprocess_data
data = data.read()
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 844, in read_with_retries
out = read(*args, **kwargs)
File "<frozen codecs>", line 325, in decode
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/utils.py", line 149, in get_rows_or_raise
return get_rows(
dataset=dataset,
...<4 lines>...
column_names=column_names,
)
File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
return func(*args, **kwargs)
File "/src/services/worker/src/worker/utils.py", line 129, in get_rows
rows_plus_one = list(itertools.islice(safe_iter(ds, dataset=dataset), rows_max_number + 1))
File "/src/services/worker/src/worker/utils.py", line 489, in safe_iter
yield from ds.decode(False) if ds.features else ds
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2818, in __iter__
for key, example in ex_iterable:
^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2355, in __iter__
for key, pa_table in self._iter_arrow():
~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2380, in _iter_arrow
for key, pa_table in self.ex_iterable._iter_arrow():
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 536, in _iter_arrow
for key, pa_table in iterator:
^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 419, in _iter_arrow
for key, pa_table in self.generate_tables_fn(**gen_kwags):
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 327, in _generate_tables
raise e
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 290, in _generate_tables
pa_table = paj.read_json(
io.BytesIO(batch), read_options=paj.ReadOptions(block_size=block_size)
)
File "pyarrow/_json.pyx", line 342, in pyarrow._json.read_json
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
raise convert_status(status)
pyarrow.lib.ArrowInvalid: JSON parse error: Invalid value. in row 0Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
YAML Metadata Warning:empty or missing yaml metadata in repo card
Check out the documentation for more information.
Kircher et al. (2019) Evaluator Container for Genomic API for Model Evaluation (GAME)
Authors Nikita Penzin, Ivan V Kulakovskiy, Ilya Vorontsov, Dmitry Penzar
Evaluator container for Kircher et. al (2019) MPRA dataset. A total of 44,647 single-nucleotide variants (SNVs) located in 21 regulatory elements, 10 promoters and 11 enhancers across 12 cell lines.
Kircher, M., Xiong, C., Martin, B. et al. Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution. Nat Commun 10, 3583 (2019). https://doi.org/10.1038/s41467-019-11526-w
kircher_evaluator.sif contains all dependencies and scripts required for the Evaluator container to read in the raw MPRA data, parse into the correct API format, and connect with any Predictor container via RestAPI.
Additional information can be found here: https://github.com/de-Boer-Lab/Genomic-Model-Evaluation-API
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