source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/ent/periodic_run.rb | Ruby | mit | 19 | main | 2,407 | # frozen_string_literal: true
require "sidekiq/web/helpers"
module Sidekiq
module Belt
module Ent
module PeriodicRun
def run
args = begin
JSON.parse(options)["args"]
rescue StandardError
{}
end
Module.const_get(klass).perform_async(*... |
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/ent/periodic_pause.rb | Ruby | mit | 19 | main | 1,475 | # frozen_string_literal: true
require "sidekiq/web/helpers"
module Sidekiq
module Belt
module Ent
module PeriodicPause
module SidekiqLoopsPeriodicPause
PAUSE_BUTTON = <<~ERB
name="pause" data-confirm="Pause the job <%= loup.klass %>? <%= t('AreYouSure') %>"
ERB
... |
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/ent/periodic_sort.rb | Ruby | mit | 19 | main | 585 | # frozen_string_literal: true
require "sidekiq/web/helpers"
module Sidekiq
module Belt
module Ent
module PeriodicSort
module SidekiqLoopsPeriodicSort
def each(&block)
@lids.map { |lid| Sidekiq::Periodic::Loop.new(lid) }.sort_by(&:klass).each(&block)
end
end
... |
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/pro/failed_batch_remove.rb | Ruby | mit | 19 | main | 1,525 | # frozen_string_literal: true
require "sidekiq/web/helpers"
module Sidekiq
module Belt
module Pro
module FailedBatchRemove
module SidekiqFailedBatchRemove
REMOVE_BUTTON = <<~ERB
<form action="<%= root_path %>batches/<%= bid %>/remove" method="post">
<%= csrf_tag... |
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/pro/force_batch_callback.rb | Ruby | mit | 19 | main | 1,972 | # frozen_string_literal: true
require "sidekiq/web/helpers"
module Sidekiq
module Belt
module Pro
module ForceBatchCallback
module SidekiqForceBatchCallback
def self.action_button(action)
<<~ERB
<form action="<%= root_path %>batches/<%= @batch.bid %>/force_callb... |
github | dannnylo/sidekiq-belt | https://github.com/dannnylo/sidekiq-belt | lib/sidekiq/belt/pro/files.rb | Ruby | mit | 19 | main | 573 | # frozen_string_literal: true
require "sidekiq"
require_relative "failed_batch_remove"
require_relative "force_batch_callback"
module Sidekiq
module Belt
module Pro
module Files
def self.use!(options = [:all])
return unless Sidekiq.pro?
all = options.include?(:all)
... |
github | yoshoku/magro | https://github.com/yoshoku/magro | Rakefile | Ruby | bsd-3-clause | 19 | main | 509 | # frozen_string_literal: true
require 'bundler/gem_tasks'
require 'rspec/core/rake_task'
RSpec::Core::RakeTask.new(:spec)
require 'rubocop/rake_task'
RuboCop::RakeTask.new
require 'rake/extensiontask'
task build: :compile # rubocop:disable Rake/Desc
desc 'Run clang-format'
task 'clang-format' do
sh 'clang-form... |
github | yoshoku/magro | https://github.com/yoshoku/magro | magro.gemspec | Ruby | bsd-3-clause | 19 | main | 1,831 | # frozen_string_literal: true
lib = File.expand_path('lib', __dir__)
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
require 'magro/version'
Gem::Specification.new do |spec|
spec.name = 'magro'
spec.version = Magro::VERSION
spec.authors = ['yoshoku']
spec.email = ['yoshoku... |
github | yoshoku/magro | https://github.com/yoshoku/magro | Gemfile | Ruby | bsd-3-clause | 19 | main | 447 | # frozen_string_literal: true
source 'https://rubygems.org'
# Specify your gem's dependencies in magro.gemspec
gemspec
gem 'rake', '~> 13.0'
gem 'rake-compiler', '~> 1.0'
gem 'rbs', '~> 1.2'
gem 'rspec', '~> 3.0'
gem 'rubocop', '~> 1.24'
gem 'rubocop-performance', '~> 1.14'
gem 'rubocop-rake', '~> 0.7'
gem 'rubocop-... |
github | yoshoku/magro | https://github.com/yoshoku/magro | lib/magro/transform.rb | Ruby | bsd-3-clause | 19 | main | 2,743 | # frozen_string_literal: true
module Magro
# Transform module provide functions of image transfom.
module Transform
module_function
# Resizes an image with bilinear interpolation method.
#
# @example
# require 'numo/narray'
# require 'magro'
#
# image = Numo::UInt8.new(16, 16... |
github | yoshoku/magro | https://github.com/yoshoku/magro | lib/magro/io.rb | Ruby | bsd-3-clause | 19 | main | 3,194 | # frozen_string_literal: true
require 'open-uri'
require 'tempfile'
module Magro
# IO module provides functions for input and output of image file.
module IO
module_function
# Loads an image from file.
# @param filename [String] File path or URL of image file to be loaded.
# Currently, the foll... |
github | yoshoku/magro | https://github.com/yoshoku/magro | lib/magro/filter.rb | Ruby | bsd-3-clause | 19 | main | 4,891 | # frozen_string_literal: true
module Magro
# Filter module provides functions for image filtering.
module Filter
module_function
# Applies box filter to image.
# This method performs zero padding as a preprocessing.
#
# @example
# image = Magro::IO.imread('foo.png')
# kernel = Numo... |
github | yoshoku/magro | https://github.com/yoshoku/magro | spec/spec_helper.rb | Ruby | bsd-3-clause | 19 | main | 624 | # frozen_string_literal: true
require 'simplecov'
SimpleCov.start
require 'bundler/setup'
require 'magro'
if defined?(GC.verify_compaction_references) == 'method'
# Calling this method will help to find object movement bugs.
GC.verify_compaction_references(double_heap: true, toward: :empty)
end
RSpec.configure ... |
github | yoshoku/magro | https://github.com/yoshoku/magro | spec/magro/io_spec.rb | Ruby | bsd-3-clause | 19 | main | 7,909 | # frozen_string_literal: true
RSpec.describe Magro::IO do
let(:img_red) do
Numo::UInt8[[255, 255, 255, 0, 0],
[255, 255, 255, 0, 0],
[255, 255, 0, 128, 128],
[0, 0, 0, 255, 255],
[0, 0, 0, 255, 255]]
end
let(:img_green) do
Numo::UInt8[[0, 0,... |
github | yoshoku/magro | https://github.com/yoshoku/magro | spec/magro/filter_spec.rb | Ruby | bsd-3-clause | 19 | main | 2,031 | # frozen_string_literal: true
RSpec.describe Magro::Filter do
context 'when given image is grayscale image' do
let(:image) do
# rubocop:disable Layout/ExtraSpacing, Layout/SpaceInsideArrayLiteralBrackets
Numo::UInt8[
[ 0, 32, 0, 32, 0],
[32, 0, 128, 0, 32],
[ 0, 128, ... |
github | yoshoku/magro | https://github.com/yoshoku/magro | spec/magro/transform_spec.rb | Ruby | bsd-3-clause | 19 | main | 2,509 | # frozen_string_literal: true
RSpec.describe Magro::Transform do
describe '#resize' do
let(:small) do
Numo::UInt8[[56, 8],
[8, 32]]
end
let(:large) do
Numo::UInt8[[56, 44, 20, 8],
[44, 37, 22, 14],
[20, 22, 25, 26],
[8, ... |
github | yoshoku/magro | https://github.com/yoshoku/magro | ext/magro/extconf.rb | Ruby | bsd-3-clause | 19 | main | 1,069 | require 'mkmf'
require 'numo/narray'
$LOAD_PATH.each do |lp|
if File.exist?(File.join(lp, 'numo/numo/narray.h'))
$INCFLAGS = "-I#{lp}/numo #{$INCFLAGS}"
break
end
end
abort 'numo/narray.h not found.' unless have_header('numo/narray.h')
if RUBY_PLATFORM =~ /mswin|cygwin|mingw/
$LOAD_PATH.each do |lp|
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | Rakefile | Ruby | bsd-3-clause | 19 | develop | 270 | # Add your own tasks in files placed in lib/tasks ending in .rake,
# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
require File.expand_path('../config/application', __FILE__)
require 'rake'
BetyRails5::Application.load_tasks |
github | PecanProject/bety | https://github.com/PecanProject/bety | Gemfile | Ruby | bsd-3-clause | 19 | develop | 2,651 | source "http://rubygems.org"
gem "rails", "5.2.4.6"
# needed for rails 3.1 and above until we phase out prototype:
## gem 'prototype-rails', github: 'rails/prototype-rails', branch: '4.2' # see https://github.com/rails/prototype-rails/issues/37
gem "nokogiri"
gem "narray", "0.6.0.4"
gem "choice", "0.1.6"
gem "comma", ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/insert_managements.rb | Ruby | bsd-3-clause | 19 | develop | 10,242 | #!/usr/bin/env ruby
# -*- coding: utf-8 -*-
# define constants
REQUIRED_HEADINGS = ['citation_author', 'citation_title', 'citation_year', 'treatment_name', 'mgmttype']
OPTIONAL_HEADINGS = [ 'date', 'dateloc', 'level', 'units', 'notes' ]
RECOGNIZED_HEADINGS = REQUIRED_HEADINGS + OPTIONAL_HEADINGS
MANAGEMENT_INSERT_TE... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/find_missing_constraints.rb | Ruby | bsd-3-clause | 19 | develop | 5,936 | #!/usr/bin/env ruby
# coding: utf-8
USAGE_DETAILS = <<'EOS'
DESCRIPTION
This script attempts to find missing foreign-key constraints by finding column
names of the form "xxx_id" and checking to see if there is an existing
corresponding foreign-key constraint. Certain columns with names of the form
"xxx_id" that are ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/validate_constraints.rb | Ruby | bsd-3-clause | 19 | develop | 7,635 | #!/usr/bin/env ruby
# coding: utf-8
USAGE_DETAILS = <<'EOS'
DESCRIPTION
This script attempts to validate existing CHECK and/or FOREIGN KEY constraints
and prints out the results of the attempt.
BACKGROUND AND EXPLANATION OF OPTIONS
A constraint added to an existing table may be marked NOT VALID when it is added
in... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/fix_database.rb | Ruby | bsd-3-clause | 19 | develop | 4,089 | #!/usr/bin/env ruby
# coding: utf-8
USAGE_DETAILS = <<'EOS'
DESCRIPTION
This script generates a file of SQL statements to fix the sequence objects and
table ids in the public schema of the specified BETYdb database. It assumes id
numbers were mis-allocated in the 99 billion range and that rows having ids in
that ra... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/lib/id_fixer.rb | Ruby | bsd-3-clause | 19 | develop | 6,273 | require_relative 'enhanced_connection'
class IdFixer < EnhancedConnection
WrongMachineId = 99
PublicSequenceQuery = <<PSQ
SELECT sequence_name FROM information_schema.sequences
WHERE sequence_schema = 'public'
PSQ
SequenceInfoQuery = <<SIQ
SELECT sequence_name, last_value, is_called FROM %s
SIQ
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/lib/postgres_helpers.rb | Ruby | bsd-3-clause | 19 | develop | 1,771 | module PostgresHelpers
ConnectionSpecFileName = 'connection_specification.yml'
# Convenience method for prompting.
# Returns chomped response, or default if given and response is empty
def prompt(prompt_string = "?", default = "")
print "#{prompt_string} (#{default}) "
response = gets
response.cho... |
github | PecanProject/bety | https://github.com/PecanProject/bety | script/db_maintenance/lib/enhanced_connection.rb | Ruby | bsd-3-clause | 19 | develop | 1,280 | require 'pg'
require 'yaml'
require_relative 'postgres_helpers'
class EnhancedConnection < PG::Connection
include PostgresHelpers
PublicTableQuery = <<PTQ
SELECT table_name FROM information_schema.tables
WHERE table_schema = 'public'
AND is_insertable_into = 'YES'
PTQ
# Initialize the ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/simple_search.rb | Ruby | bsd-3-clause | 19 | develop | 6,518 | # Add SEARCH_INCLUDES & SEARCH_FIELDS to your class to narrow the search scope.
#
# Not adding them will search all fields in your class, but not other classes.
# _Must_ include SEARCH_FIELDS if you want to search related classes using SEARCH_INCLUDES.
#
# Searches entire day range (00:00 -> 23:59) when doing date sear... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/authenticated_test_helper.rb | Ruby | bsd-3-clause | 19 | develop | 400 | module AuthenticatedTestHelper
# Sets the current user in the session from the user fixtures.
def login_as(user)
@request.session[:user_id] = user ? (user.is_a?(User) ? user.id : users(user).id) : nil
end
def authorize_as(user)
@request.env["HTTP_AUTHORIZATION"] = user ? ActionController::HttpAuthentic... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/data_access.rb | Ruby | bsd-3-clause | 19 | develop | 1,842 | module DataAccess
# Limit search results according to the current user's data access
# permissions, or, if no user is logged in, limit access to checked
# data of access level 4.
#
# Administrators (that is, users with page_access_level 1) have view
# access to all data, checked or not. Managers can access... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/symbolize_helper.rb | Ruby | bsd-3-clause | 19 | develop | 789 | # This code is from http://apidock.com/rails/Hash/deep_symbolize_keys
# To be able to call Hash#deep_symbolize_keys, first call
#
# using SymbolizeHelper
#
# Rails 4.02 defines a slightly less powerful version of deep_symbolize_keys.
# It doesn't symbolize hashes in nested arrays, but it may suffice for our
# purpose... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/mercator.rb | Ruby | bsd-3-clause | 19 | develop | 1,857 | module Mercator
#MercatorProjection code from: http://ym4r.rubyforge.org/
#Structure that contains configuration data for the WMS tiler
FurthestZoom = Struct.new(:ul_corner, :zoom, :tile_size)
#Contains LatLon coordinates
LatLng = Struct.new(:lat,:lng)
#Contain projected coordinates (in pixel or meter... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/advanced_search.rb | Ruby | bsd-3-clause | 19 | develop | 3,241 | # A module to be used inside models to facilitate searching. Since we
# want the ::advanced_search method to be a class method, use
#
# <tt>extend AdvancedSearch</tt>
#
# at the class level.
module AdvancedSearch
# Given the string +search+, which will usually be one or more words
# or parts of words, generates a... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/authenticated_system.rb | Ruby | bsd-3-clause | 19 | develop | 22,657 | module AuthenticatedSystem
protected
# Returns the numeric level of access for each user id
# or 100 as each level will contain at least the rights
# of the level below it.
#def access_level(user_id)
# #Access levels
# admin = [1,2,3,4,5,6]
# data_managers = []
# ebi_collaborators ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/coordinate_search.rb | Ruby | bsd-3-clause | 19 | develop | 751 | module CoordinateSearch
# degrees lat ~ miles/69.1
# degrees lng ~ miles/53.0 (at the 40th parallels)
def coordinate_search(params)
if (params[:mapDisplayed] == "true" &&
(params[:mapSearchMode] == "by site" || params[:mapSearchMode] == "by region"))
lat = params[:lat][/-?\d+\.?\d*/].to_f
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/databases-hack.rake | Ruby | bsd-3-clause | 19 | develop | 1,658 | =begin
# An incompatibility between the active-record-3.2.21 and
# activerecord-postgis-adapter-0.6.6 rails3 rake files makes these
# hacks necessary.
# The definition of db:test:load_structure given at
# "gems/activerecord-3.2.21/lib/active_record/railties/databases.rake:501"
# runs its prerequisite (db:test:purge) a... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/document_db_schema.rake | Ruby | bsd-3-clause | 19 | develop | 10,087 | namespace :bety do
### METHODS ###
# Things we may want to run more than once are defined as methods.
def run_schema_spy
ensure_parameters_are_set
host = @config["host"]
database = @config["database"]
username = @config["username"]
password = @config["password"]
sh "#{@java} -jar ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/document_betydb.rake | Ruby | bsd-3-clause | 19 | develop | 1,634 | # This test is needed because we don't load YARD in all environments:
if defined? YARD
# Define the "yard" task:
YARD::Rake::YardocTask.new do |t|
# Most options are set in the .yardopts file under the Rails root
# directory rather than here.
# Uncomment this to get a report of all undocumented methods... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/databases.rake | Ruby | bsd-3-clause | 19 | develop | 2,749 | # Task for ensuring script/load.bety.sh exists
file "script/load.bety.sh" do
puts "downloading load.bety.sh"
url = "https://raw.githubusercontent.com/PecanProject/pecan/master/scripts/load.bety.sh"
`cd script && curl -LOs #{url}`
# curl may create a load.bety.sh file with contents "Not Found" if we get a 404 e... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/change_logger_to_stdout.rake | Ruby | bsd-3-clause | 19 | develop | 428 | desc <<DESCRIPTION
Change logger to STDOUT
When this task is listed command line, tasks following it will be logged
to STDOUT instead of to the default log file. In particular, using this
with the migration task ("rake log db:migrate") will display what SQL
commands are run to effect the migra... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/schemaSpyConfigTemplate.rb | Ruby | bsd-3-clause | 19 | develop | 3,253 | # In order to generate the SchemaSpy documentation of the BETYdb database schema
# (rake task "bety:dbdocs"), you have to specify an output directory and the
# locations of the Java executatable and the required Jar files. This may
# either be done by creating a configuration file "schemaSpyConfig.rb" in this
# direct... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/make_keys.rake | Ruby | bsd-3-clause | 19 | develop | 332 | namespace :bety do
desc "create api key for users without one"
task :make_keys => :environment do
users = User.where("apikey is NULL")
users.each do |user|
user.create_apikey
if user.save
ContactMailer::apikey_email(user).deliver
end
end
puts "api key created for every use... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/update_comments.rake | Ruby | bsd-3-clause | 19 | develop | 6,186 | namespace :bety do
namespace :db do
# This is a subsidiary task. It should be a prerequisite for any
# task that calls the table_2_model method. It loads each model
# found in the app/models directory.
task :load_models => :environment do
Dir.foreach(Rails.root.join("app", "models")) do ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | lib/tasks/notes.rake | Ruby | bsd-3-clause | 19 | develop | 1,446 | ### This is modified from sample code at http://crypt.codemancers.com/posts/2013-07-12-redefine-rake-routes-to-add-your-own-custom-tag-in-Rails/ ###
### It is intended so users may spell "TODO" annotations in various ways. It also adds some additional search tags and search directories.
# This block redefines SourceA... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/rails_helper.rb | Ruby | bsd-3-clause | 19 | develop | 3,346 | # This file is copied to spec/ when you run 'rails generate rspec:install'
ENV['RAILS_ENV'] ||= 'test'
require File.expand_path('../../config/environment', __FILE__)
# Prevent database truncation if the environment is production
abort("The Rails environment is running in production mode!") if Rails.env.production?
requ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/views/treatments/show.html.erb_spec.rb | Ruby | bsd-3-clause | 19 | develop | 255 | describe "treatments/show" do
before(:each) do
@treatment = assign(:treatment, Treatment.first)
end
it "renders attributes in <p>" do
render
# Run the generator again with the --webrat flag if you want to use webrat matchers
end
end |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/views/treatments/new.html.erb_spec.rb | Ruby | bsd-3-clause | 19 | develop | 358 | describe "treatments/new" do
before(:each) do
assign(:treatment, Treatment.new)
assign(:current_user, User.new)
end
it "renders new treatment form" do
render
# Run the generator again with the --webrat flag if you want to use webrat matchers
assert_select "form[action=?][method=?]", treatmen... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/views/treatments/edit.html.erb_spec.rb | Ruby | bsd-3-clause | 19 | develop | 430 | describe "treatments/edit" do
before(:each) do
@treatment = assign(:treatment, Treatment.first)
assign(:management, Management.new)
assign(:current_user, User.new)
end
it "renders the edit treatment form" do
render
# Run the generator again with the --webrat flag if you want to use webrat ma... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/controllers/sessions_controller_spec.rb | Ruby | bsd-3-clause | 19 | develop | 2,610 | describe SessionsController do
describe "GET 'login'" do
it "should be successful" do
get 'create'
expect(response).to be_success
end
# it "should have 'Log In'" do
# get 'create'
# puts "####"
# puts response
# response.should have_content('Log In')
## response.should... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/controllers/bulk_upload_controller_spec.rb | Ruby | bsd-3-clause | 19 | develop | 8,690 | describe BulkUploadController, :type => :controller do
class BulkUploadController
# override the login requirement for testing:
before_action :login_required, only: []
end
describe "display csv file" do
before(:each) do
get 'start_upload'
end
context "test general" do
it "shou... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/controllers/treatments_controller_spec.rb | Ruby | bsd-3-clause | 19 | develop | 6,897 | # This spec was generated by rspec-rails when you ran the scaffold generator.
# It demonstrates how one might use RSpec to specify the controller code that
# was generated by Rails when you ran the scaffold generator.
#
# It assumes that the implementation code is generated by the rails scaffold
# generator. If you ar... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/controllers/traits_controller_spec.rb | Ruby | bsd-3-clause | 19 | develop | 3,156 | describe TraitsController do
let(:session) {
{user_id: 512127716}
}
let(:valid_attr){
{:mean => '2'}
}
let(:invalid_attr){
{:mean => "-1",:stat => "a"}
}
let(:valid_covariate){
[{'variable_id' => '404','level' =>'10'}]
}
let(:invalid_covariate){
[{'variable_id' => '404','level' =>'50'}]
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/controllers/users_controller_spec.rb | Ruby | bsd-3-clause | 19 | develop | 529 | describe UsersController do
# describe "GET 'login'" do
# it "should be successful" do
# get 'create'
# response.should be_success
# end
# end
#
#
# context 'User login with captcha' do
# it 'should login with correct recaptcha' do
# SessionsController.any_instance.expects(:verify_recapt... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/pft_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 3,921 | require 'support/helpers'
include LoginHelper
feature 'Pfts features work works' do
before :each do
login_test_user
end
context 'GET /pfts' do
before :each do
visit '/pfts'
end
it 'should have "Listing pfts" ' do
expect(page).to have_content 'Listing PFTs'
end
# tests for ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/user_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,474 | require 'support/helpers'
include LoginHelper
feature 'Users index works' do
before :each do
login_test_user
end
context 'GET /users' do
it 'should have "Listing Users" ' do
visit '/users'
expect(page).to have_content 'Listing Users'
end
context 'clicking view user button' do
i... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/input_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,271 | require 'support/helpers'
include LoginHelper
feature 'Inputs features work' do
before :each do
login_test_user
visit '/inputs/'
end
specify 'The input edit page should be accessible' do
first(:xpath, './/a[@alt = "edit"]').click
expect(page).to have_content 'Editing Input'
end
context 'Edi... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/bulk_upload_integration_2_spec.rb | Ruby | bsd-3-clause | 19 | develop | 28,422 | require 'support/helpers'
include LoginHelper
include BulkUploadHelper
feature 'Bulk Data Upload' do
before :each do
login_test_user
end
context 'Non-strictly matching DOI is OK' do
before :all do
f = File.new("spec/tmp/yield_by_doi.csv", "w")
f.write <<CSV
yield,citation_doi
4.23,10.213... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/sitegroup_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 6,577 | require 'support/helpers'
include LoginHelper
# Override the default path "#{::Rails.root}/spec/fixtures"
RSpec.configure do |config|
config.fixture_path = "#{::Rails.root}/test/fixtures"
end
feature 'Authorization:' do
fixtures :sitegroups
let(:private_sitegroup) { sitegroups(:private_sitegroup) }
let(:pu... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/variable_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,368 | require 'support/helpers'
include LoginHelper
feature 'Variables index works' do
before :each do
login_test_user
end
context 'GET /variables' do
it 'should have "Listing variables" ' do
visit '/variables'
expect(page).to have_content 'Listing Variables'
end
it 'should allow creation... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/citation_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 3,953 | require 'support/helpers'
include LoginHelper
feature 'Citation features work' do
before :each do
login_test_user
end
context 'GET /citations/new', :type => :feature do
it 'should have "New Citation" ' do
visit '/citations/new'
expect(page).to have_content 'New Citation'
end
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/management_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 3,731 | require 'support/helpers'
include LoginHelper
feature 'Management features work' do
before :each do
login_test_user
visit '/managements/'
end
context 'GET /managements' do
it 'should have "Listing Managements" ' do
expect(page).to have_content 'Listing Managements'
end
it 'should allo... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/cultivars_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 2,100 | require 'support/helpers'
include LoginHelper
feature 'Cultivars index works' do
before :each do
login_test_user
end
context 'GET /cultivars' do
it 'should have "Listing Cultivars" ' do
visit '/cultivars'
expect(page).to have_content 'Listing Cultivars'
end
end
context 'GET /cultiva... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/format_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,263 | require 'support/helpers'
include LoginHelper
feature 'Formats index works' do
before :each do
login_test_user
end
context 'GET /formats/new' do
it 'should have "New Format" ' do
visit '/formats/new'
expect(page).to have_content 'New Format'
end
it 'should allow creation of new form... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/static_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 211 | feature 'Citation index works' do
context 'Visiting root_path' do
it 'should result in current_path equaling "/"' do
visit root_path
expect(current_path).to eq '/'
end
end
end |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/model_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,527 | require 'support/helpers'
include LoginHelper
feature 'Models features work' do
before :each do
login_test_user
end
specify 'The model edit page should be accessible' do
visit '/models/'
first(:xpath, './/a[@alt = "edit"]').click
expect(page).to have_content 'Editing Model'
end
context 'Edi... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/trait_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 5,108 | require 'support/helpers'
include LoginHelper, AutocompletionHelper
feature 'Traits index works' do
before :each do
login_test_user
end
context 'GET /traits' do
it 'should have "Listing Traits" ' do
visit '/traits'
expect(page).to have_content 'Listing Traits'
end
context 'clicking ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/treatment_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 4,043 | require 'support/helpers'
include LoginHelper
feature 'Treatment features work' do
before :each do
login_test_user
end
context 'New Treatments' do
it 'should have a "New Treatment" page' do
visit '/treatments/new'
expect(page).to have_content 'New Treatment'
end
it 'should al... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/entitiy_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,669 | require 'support/helpers'
include LoginHelper
feature 'Entities index works' do
before :each do
login_test_user
end
context 'GET /entities' do
it 'should have "Listing Entities" ' do
visit '/entities'
expect(page).to have_content 'Listing Entities'
end
it 'should have "New Entity" '... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/prior_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 2,606 | require 'support/helpers'
include LoginHelper, AutocompletionHelper
feature 'Priors index works' do
before :each do
login_test_user
end
context 'GET /priors' do
it 'should have "Listing Priors" ' do
visit '/priors'
expect(page).to have_content 'Listing Priors'
end
it 'should allow c... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/site_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 2,777 | require 'support/helpers'
include LoginHelper
feature 'Sites index works' do
before :each do
login_test_user
end
context 'GET /sites' do
it 'should have "Listing Sites" ' do
visit '/sites'
expect(page).to have_content 'Listing Sites'
end
it 'should allow creation of new sites' do
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/work_flow_spec.rb | Ruby | bsd-3-clause | 19 | develop | 582 | # the test for the work_flow page
require 'support/helpers'
include LoginHelper
feature 'Work_flow index works' do
before :each do
login_test_user
end
subject { page}
context 'GET /workflows' do
it 'should have "Listing Workflows" ' do
visit workflows_path
expect(page).to have_content 'Li... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/ensemble_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 952 | require 'support/helpers'
include LoginHelper
feature 'Ensembles work' do
before :each do
login_test_user
end
context 'GET /ensembles' do
it 'should have "Listing Ensembles" ' do
visit '/ensembles'
expect(page).to have_content 'Listing Ensembles'
end
# to-do: move this to a routing ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/user_creation_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,349 | describe "Signup page", :type => :request do
describe "GET /signup" do
it "should return a valid response" do
# Run the generator again with the --webrat flag if you want to use webrat methods/matchers
get "/signup"
expect(response.status).to be(200)
end
end
end
feature 'User creation w... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/session_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,256 | describe "Login page", :type => :request do
describe "GET /login" do
it "should return a valid response" do
# Run the generator again with the --webrat flag if you want to use webrat methods/matchers
get "/login"
expect(response.status).to be(200)
end
end
end
feature 'Login works' do
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/covariate_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 493 | require 'support/helpers'
include LoginHelper
feature 'Covariate pages work' do
before :each do
login_test_user
end
context 'GET /covariates' do
it 'should have "Listing Covariates" ' do
visit '/covariates'
expect(page).to have_content 'Listing Covariates'
end
end
specify 'Individua... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/yield_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 7,031 | require 'support/helpers'
include LoginHelper
feature 'Yields pages work' do
context 'Logged on as Administrator' do
before :each do
login_test_user
end
# it 'should have "Listing Yields" ' do
# visit '/yields'
# page.should have_content 'Listing Yields'
# end
it 'should forward ... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/method_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,513 | require 'support/helpers'
include LoginHelper
feature 'Methods index works' do
before :each do
login_test_user
end
context 'GET /methods' do
it 'should have "Listing Methods" ' do
visit '/methods'
expect(page).to have_content 'Listing Methods'
end
it 'should allow creation of new me... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/posterior_search_spec.rb | Ruby | bsd-3-clause | 19 | develop | 714 | # test for redmine task #1908
require 'support/helpers'
include LoginHelper
feature 'Posteriors search' do
before :each do
login_test_user
end
it 'should list posteriors' do
visit '/posteriors'
expect(page).to have_content 'Listing Posteriors'
end
context 'search on posteriors' do
it 'sh... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/bulk_upload_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 3,307 | require 'support/helpers'
include LoginHelper
include BulkUploadHelper
feature 'CSV file upload works' do
before :each do
login_test_user
end
context 'GET /bulk_upload/start_upload' do
it 'should upload the given file' do
visit '/bulk_upload/start_upload'
attach_file 'CSV file', Rails.roo... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/features/specie_integration_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,916 | require 'support/helpers'
include LoginHelper
feature 'Species pages work' do
before :each do
login_test_user
end
context 'GET /species' do
it 'should have "Listing Species" ' do
visit '/species'
expect(page).to have_content 'Listing Species'
end
end
context 'GET /species/new' do
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/helpers/static_helper_spec.rb | Ruby | bsd-3-clause | 19 | develop | 385 | # Specs in this file have access to a helper object that includes
# the StaticHelper. For example:
#
# describe StaticHelper do
# describe "string concat" do
# it "concats two strings with spaces" do
# helper.concat_strings("this","that").should == "this that"
# end
# end
# end
describe StaticHelper d... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/helpers/test_helper.rb | Ruby | bsd-3-clause | 19 | develop | 723 | # Transactional fixtures do not work with Selenium tests, because Capybara
# uses a separate server thread, which the transactions would be hidden
# from. We hence use DatabaseCleaner to truncate our test database.
DatabaseCleaner.strategy = :truncation
class ActionDispatch::IntegrationTest
# Make the Capybara DSL a... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/helpers/sessions_helper_spec.rb | Ruby | bsd-3-clause | 19 | develop | 391 | # Specs in this file have access to a helper object that includes
# the SessionsHelper. For example:
#
# describe SessionsHelper do
# describe "string concat" do
# it "concats two strings with spaces" do
# helper.concat_strings("this","that").should == "this that"
# end
# end
# end
describe SessionsHe... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/pfts_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 425 | require "spec_helper"
describe PftsController do
describe "routing" do
it "allows posting to /pfts/1/edit2_pfts_species" do
expect(post("/pfts/1/edit2_pfts_species")).to route_to("pfts#edit2_pfts_species", { "id" => "1" })
end
it "allows getting /pfts/1/edit2_pfts_species" do
expect(get("/p... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/species_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 519 | require "spec_helper"
describe SpeciesController do
describe "routing" do
it "routes the species removal action" do
expect(get("/species/rem_pfts_species")).to route_to("species#rem_pfts_species")
end
it "routes the the edit associated pfts action" do
expect(get("/species/add_pfts_species")... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/treatments_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 881 | require "spec_helper"
describe TreatmentsController do
describe "routing" do
it "routes to #index" do
expect(get("/treatments")).to route_to("treatments#index")
end
it "routes to #new" do
expect(get("/treatments/new")).to route_to("treatments#new")
end
it "routes to #show" do
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/traits_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 410 | require "spec_helper"
describe TraitsController do
describe "routing" do
specify "There is a route for GET /traits/trait_search." do
expect(post("/traits/trait_search")).to route_to("traits#trait_search")
end
it "There is a route for GET /traits/unlink_covariate." do
expect(get("/traits/2/u... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/inputs_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 752 | require "spec_helper"
describe InputsController do
describe "routing" do
it "There is a route for GET /inputs/edit_inputs_files" do
expect(get("/inputs/edit_inputs_files")).to route_to("inputs#edit_inputs_files")
end
it "There is a route for GET /inputs/edit_inputs_variables" do
expect(get(... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/routing/models_routing_spec.rb | Ruby | bsd-3-clause | 19 | develop | 438 | require "spec_helper"
describe ModelsController do
describe "routing" do
it "There is a route for GET /models/:id/edit_models_files" do
expect(get("/models/1/edit_models_files")).to route_to("models#edit_models_files", id: "1")
end
it "There is a route for POST /models/:id/edit_models_files" do
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/support/helpers.rb | Ruby | bsd-3-clause | 19 | develop | 1,906 | module LoginHelper
def login_test_user
visit root_path
fill_in 'Login', :with => 'test_admin_user'
fill_in 'Password', :with => 'Ciuleandra'
click_button 'Log in'
end
def login_nonadmin_test_user
visit root_path
fill_in 'Login', :with => 'robben_yang'
fill_in 'Password', :with =... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/models/user_spec.rb | Ruby | bsd-3-clause | 19 | develop | 289 | describe User do
before { @user = User.new(login => "carlcrott", email => "user@gmail.com") }
subject { @user }
# it { should respond_to(:login) }
# it { should respond_to(:email) }
# it { should respond_to(:page_access_level) }
# it { should respond_to(:access_level) }
end |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/models/trait_spec.rb | Ruby | bsd-3-clause | 19 | develop | 507 | describe Trait do
it 'should be invalid if no attributes are given' do
t = Trait.new
expect(t.invalid?).to eq(true)
end
it 'should be valid if a valid mean, variable_id, and access_level are given' do
t = Trait.new mean: 6, access_level: 1, variable_id: 1
expect(t.invalid?).to eq(false)
end
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/models/bulk_upload_data_set_spec.rb | Ruby | bsd-3-clause | 19 | develop | 25,460 | describe BulkUploadDataSet do
describe "Minimal requirements for instantiating BulkUploadDataSet" do
let (:upload_io) {
Struct.new("Upload", :original_filename, :path)
path = Proc.new do
f = File.new("spec/tmp/my_upload_file.csv", "w")
f.write "yield\n5.1\n"
f.close
f.... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/models/database/sites_cultivars_invariants.rb | Ruby | bsd-3-clause | 19 | develop | 4,886 | require 'spec_helper'
RSpec.configure do |config|
config.fixture_path = "#{::Rails.root}/test/fixtures"
end
RSpec.describe "Site-Cultivar-Species invariants" do
fixtures(:traits)
context "A new trait is being inserted" do
let(:t) { Trait.new access_level: 4, mean: 3, variable_id: 5 }
# CASE 1
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/api/trait_and_yield_access_spec.rb | Ruby | bsd-3-clause | 19 | develop | 1,619 | require 'spec_helper'
RSpec.describe "Trait GET API" do
shared_examples "testing access levels" do |access_level|
let(:apikey) { '4' * 36 + access_level.to_s * 4 }
specify <<-MESSAGE do
For users with a data access level of #{access_level}, traits having a
data access level having a lower... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/api/trait_insertion_api_spec.rb | Ruby | bsd-3-clause | 19 | develop | 7,626 | # -*- coding: utf-8 -*-
require 'spec_helper'
RSpec.describe "Trait insertion API:" do
RSpec.shared_examples "format" do |data_file, type, format_extension,
content_type, num_new_traits = 1,
num_new_entities = 1,
... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/api/unit/trait_creation_support_lib_spec.rb | Ruby | bsd-3-clause | 19 | develop | 4,613 | require 'spec_helper'
class EncapsulatedTraitCreationSupportModule
include Api::TraitCreationSupport
def initialize
@new_trait_ids = []
@structure_validation_errors = []
@lookup_errors = []
@model_validation_errors = []
@database_insertion_errors = []
@date_data_errors = []
end
# s... |
github | PecanProject/bety | https://github.com/PecanProject/bety | spec/api/unit/csv_handler_spec.rb | Ruby | bsd-3-clause | 19 | develop | 5,174 | require 'spec_helper'
def compare_xml_docs(doc1, doc2)
strip_text_nodes(doc1).canonicalize == strip_text_nodes(doc2).canonicalize
end
class Nokogiri::XML::Document
# Our documents don't contain text nodes of significance. This
# facilitates comparing ignoring whitespace text nodes.
def strip_blank_text_node... |
github | PecanProject/bety | https://github.com/PecanProject/bety | docker/config.ru | Ruby | bsd-3-clause | 19 | develop | 221 | # This file is used by Rack-based servers to start the application.
require ::File.expand_path('../config/environment', __FILE__)
map (ENV['RAILS_RELATIVE_URL_ROOT'] || "") + "/" do
run BetyRails5::Application
end |
github | PecanProject/bety | https://github.com/PecanProject/bety | app/helpers/sites_helper.rb | Ruby | bsd-3-clause | 19 | develop | 2,381 | module SitesHelper
# Generate a text field control for form "site_form" for submitting the value
# of attribute "attribute" of the Site model being edited. Use options passed
# in "common_options", but disable the control if the Site "@site" is not a
# point.
def geometry_aware_text_field(site_form, attribu... |
github | PecanProject/bety | https://github.com/PecanProject/bety | app/helpers/traits_helper.rb | Ruby | bsd-3-clause | 19 | develop | 625 | module TraitsHelper
def checked_status_list(trait)
if ( current_user.access_level < trait.access_level ) or ( trait.user_id == current_user.id ) or ( current_user.page_access_level <= 2 )
if trait.checked == -1 and current_user.page_access_level > 2
"<td>Failed QA/QC check</td>"
else
... |
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