source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasegm19238pk_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseGm19238Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehgfhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 821 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHgfHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehrcehotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHrceHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmth3k4me3stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmtH3k4me3StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmh4k20me1stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmH4k20me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchipgm12878ctcfpkrep1_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipGm12878CtcfPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainrn4_spec.rb | Ruby | mit | 19 | master | 479 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainRn4" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/genscan_spec.rb | Ruby | mit | 19 | master | 771 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::Genscan" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm06990ctcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm06990CtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/snparrayillumina1m_spec.rb | Ruby | mit | 19 | master | 805 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::SnpArrayIllumina1M" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbssknshractcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsSknshraCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonek562h3k36me3stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneK562H3k36me3StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09319pkrep2_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09319PkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm12878h3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm12878H3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmh3k4me2stdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmH3k4me2StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmfpkrep2_spec.rb | Ruby | mit | 19 | master | 803 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmfPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasek562pkrep1_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseK562PkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09309hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09309HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhl60simplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHl60SimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm12874ctcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm12874CtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmth3k4me2stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmtH3k4me2StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshl60ctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHl60CtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchipk562pol2pk_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipK562Pol2Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehuvecpol2bstdpk_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHuvecPol2bStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasenhekhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseNhekHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/orfeomemrna_spec.rb | Ruby | mit | 19 | master | 754 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::OrfeomeMrna" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsheeuwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHeeUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhnpcesimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 860 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHnpceSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/affyexonprobefull_spec.rb | Ruby | mit | 19 | master | 792 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AffyExonProbeFull" do
describe "#find_by_interval" do
context "given range chr1:1-25,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse(... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/laminb1_spec.rb | Ruby | mit | 19 | master | 459 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::LaminB1" do
describe "#find_by_interval" do
context 'given range chr1:1-100,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.pars... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhuvecsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 860 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHuvecSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhaspsimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHaspSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecdneohotspotsrep2_spec.rb | Ruby | mit | 19 | master | 839 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecdneoHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/hapmapsnpschd_spec.rb | Ruby | mit | 19 | master | 782 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::HapmapSnpsCHD" do
describe "#find_by_interval" do
context "given range chr1:1-600,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbswerirb1ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsWerirb1CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehasph3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHaspH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsk562hudsonalphagrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 551 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsK562HudsonalphagrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainbostau7_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainBosTau7" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmh3k4me3stdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmH3k4me3StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehuvech3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 531 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHuvecH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonesaech3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneSaecH3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehconfpkrep2_spec.rb | Ruby | mit | 19 | master | 809 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHconfPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainailmel1_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainAilMel1" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsag09319uwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsAg09319UwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehmfh3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHmfH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehcfhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 821 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHcfHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/eiojcvinaspos_spec.rb | Ruby | mit | 19 | master | 473 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::EioJcviNASPos" do
describe "#find_by_interval" do
context 'given range chr1:1-500,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/vegagene_spec.rb | Ruby | mit | 19 | master | 768 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::VegaGene" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistoneh1hesch3k4me1stdpk_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneH1hescH3k4me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhlfh4k20me1stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhlfH4k20me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasegm19239pk_spec.rb | Ruby | mit | 19 | master | 823 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseGm19239Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nestedrepeats_spec.rb | Ruby | mit | 19 | master | 785 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NestedRepeats" do
describe "#find_by_interval" do
context "given range chr1:1-200,000" do
it "returens an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("c... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/altseqhaplotypesp9_spec.rb | Ruby | mit | 19 | master | 787 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AltSeqHaplotypesP9" do
describe "#find_by_interval" do
context "given range chr1:1-200,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshek293ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHek293CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasemelanopk_spec.rb | Ruby | mit | 19 | master | 820 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseMelanoPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchiphelas3ctcfpk_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipHelas3CtcfPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasesaecpkrep2_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSaecPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhgfsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHgfSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbssknshrauwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsSknshraUwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/spmrna_spec.rb | Ruby | mit | 19 | master | 402 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::SpMrna" do
describe "#find_by_spID" do
context 'given "B7ZGX9_HUMAN"' do
it 'returns (r.mrnaID == "uc010nxq.1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::SpMrna.find_by_spID("B7... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasenhekpkrep1_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseNhekPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhekh3k4me2stdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhekH3k4me2StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehreh3k36me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHreH3k36me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/fosendpairs_spec.rb | Ruby | mit | 19 | master | 751 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::FosEndPairs" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehpafpkrep1_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHpafPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmecsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmecSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/burgernaseqgemmapperalignt47dallrawsignal_spec.rb | Ruby | mit | 19 | master | 851 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::BurgeRnaSeqGemMapperAlignT47DAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayaoafsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayAoafSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehvmfpkrep2_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHvmfPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonek562h3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneK562H3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag09309ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg09309CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneh7esh3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneH7esH3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehmech4k20me1stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHmecH4k20me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbspanisletssitesrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsPanisletsSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm12873ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm12873CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainanocar2_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainAnoCar2" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshnpceuwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 543 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHnpceUwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbspanisletssitesrep5_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsPanisletsSitesRep5" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/affyexonprobeextended_spec.rb | Ruby | mit | 19 | master | 805 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AffyExonProbeExtended" do
describe "#find_by_interval" do
context "given range chr1:1-25,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhresimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHreSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/hinv_spec.rb | Ruby | mit | 19 | master | 400 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::HInv" do
describe "#find_by_geneId" do
context 'given "HIT000000001"' do
it 'returns (r.mrnaAcc == "AB002292")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::HInv.find_by_geneId("HIT... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag04449ctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg04449CtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netmondom5_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetMonDom5" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehmfh3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHmfH3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayskmcsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArraySkmcSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenestgm12878slbprbpassocrna_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStGm12878SlbpRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmvecdblneosimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 878 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmvecdblneoSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshipeuwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHipeUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshmecctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHmecCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonenhekh3k36me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneNhekH3k36me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/snparrayilluminahumanomni1_quad_spec.rb | Ruby | mit | 19 | master | 838 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::SnpArrayIlluminaHumanOmni1_Quad" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/hapmapsnpsasw_spec.rb | Ruby | mit | 19 | master | 787 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::HapmapSnpsASW" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonenb4h3k4me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneNb4H3k4me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonenhekh3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneNhekH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonesknshrah3k36me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonebjh3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneBjH3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayag04450simplesignalrep1_spec.rb | Ruby | mit | 19 | master | 866 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayAg04450SimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraycaco2simplesignalrep1_spec.rb | Ruby | mit | 19 | master | 860 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayCaco2SimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehpafh3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHpafH3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsheectcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHeeCtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
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