source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmvecdlyneosimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 878 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairenhbepk_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireNhbePk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfsknshrapk_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfSknshraPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehbmech3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHbmecH3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehuvech3k9acstdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHuvecH3k9acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshek293yalegrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHek293YalegrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasesknshrahotspotsrep1_spec.rb | Ruby | mit | 19 | master | 832 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSknshraHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainxentro3_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainXenTro3" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12891hudsonalphagrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 557 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12891HudsonalphagrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnecti... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm12878h3k27me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneaoafh3k4me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneAoafH3k4me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshepg2ctcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHepg2CtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhaesimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHaeSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09309pkrep1_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09309PkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/agilentcghsnp2x400k_spec.rb | Ruby | mit | 19 | master | 800 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AgilentCghSnp2x400k" do
describe "#find_by_interval" do
context "given range chr1:1-200,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.par... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/mrnaorinetinfo_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::MrnaOrientInfo" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/cytoband_spec.rb | Ruby | mit | 19 | master | 759 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::CytoBand" do
describe "#find_by_INTERVAL" do
context "given range chr1:1-5,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag09319ctcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg09319CtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag09319hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg09319HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nethg19patch10_spec.rb | Ruby | mit | 19 | master | 761 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetHg19Patch10" do
describe "#find_by_interval" do
context "given range chr1:1-200,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.pars... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsnhekctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsNhekCtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonecaco2h3k36me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneCaco2H3k36me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsosteoblopenchromgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 553 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsOsteoblOpenchromgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasecaco2hotspotsrep2_spec.rb | Ruby | mit | 19 | master | 827 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseCaco2HotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k36me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k36me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairehuvecpk_spec.rb | Ruby | mit | 19 | master | 818 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireHuvecPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbssaecctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsSaecCtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/ctgpos2_spec.rb | Ruby | mit | 19 | master | 770 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::CtgPos2" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseaoafpkrep2_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAoafPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeaffyrnachipfilttransfragshepg2nucleolustotal_spec.rb | Ruby | mit | 19 | master | 899 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeAffyRnaChipFiltTransfragsHepg2NucleolusTotal" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhcpehotspots_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHcpeHotspots" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehpafhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHpafHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehct116pkrep1_spec.rb | Ruby | mit | 19 | master | 812 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHct116PkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInte... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhdfadh3k9acstdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhdfadH3k9acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehelas3h3k27acstdpk_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHelas3H3k27acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodegencode2wayconspseudov4.rb | Ruby | mit | 19 | master | 803 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeGencode2wayConsPseudoV4" do
describe "#find_by_id" do
context 'given interval "chr1:1-500,000"' do
it 'returns 7 items"' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.par... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netornana1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetOrnAna1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsag04449uwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsAg04449UwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12892hudsonalphagrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 557 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12892HudsonalphagrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnecti... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonek562h3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneK562H3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-3,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehvmfh3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHvmfH3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehrpepkrep1v2_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHrpePkRep1V2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmveclblsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 869 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmveclblSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraynhlfsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayNhlfSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehepg2hotspotsrep2_spec.rb | Ruby | mit | 19 | master | 827 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHepg2HotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshl60ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHl60CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehuvech3k4me1stdpk_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHuvecH3k4me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshmfctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHmfCtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmveclblpkrep1_spec.rb | Ruby | mit | 19 | master | 818 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmveclblPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/hapmapsnpsyri_spec.rb | Ruby | mit | 19 | master | 783 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::HapmapSnpsYRI" do
describe "#find_by_interval" do
context "given range chr1:1-600,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehcfaapkrep2_spec.rb | Ruby | mit | 19 | master | 809 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHcfaaPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshepg2ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHepg2CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseskmcpkrep2_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSkmcPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag04450ctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg04450CtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraysknshrasimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 866 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArraySknshraSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayag09309simplesignalrep2_spec.rb | Ruby | mit | 19 | master | 866 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayAg09309SimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/burgernaseqgemmapperalignt47d_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::BurgeRnaSeqGemMapperAlignT47D" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonebjh3k36me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneBjH3k36me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/xenorefflat_spec.rb | Ruby | mit | 19 | master | 454 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::XenoRefFlat" do
describe "#find_by_interval" do
context "given range chr1:1-15,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecdblneohotspotsrep2_spec.rb | Ruby | mit | 19 | master | 845 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecdblneoHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k27me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/phastcons46way_spec.rb | Ruby | mit | 19 | master | 482 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::PhastCons46way" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag04449hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg04449HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/snparrayillumina550_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::SnpArrayIllumina550" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.p... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/genomicsuperdups_spec.rb | Ruby | mit | 19 | master | 792 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::GenomicSuperDups" do
describe "#find_by_interval" do
context "given range chr1:1-200,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse(... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasesaechotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSaecHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm06990h3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsag09319ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsAg09319CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhmfsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHmfSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhconfsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 860 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHconfSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmctcfstdpk_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmCtcfStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/rgdqtllink_spec.rb | Ruby | mit | 19 | master | 376 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::RgdQtlLink" do
describe "#find_by_id" do
context "given 1298404" do
it 'returns "OSTEAR25_H"' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::RgdQtlLink.find_by_id(1298404)
r.n... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsh1heschudsonalphagrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 555 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsH1hescHudsonalphagrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnectio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbshaeuwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsHaeUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehreh3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHreH3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/pgna12892_spec.rb | Ruby | mit | 19 | master | 770 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::PgNA12892" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonebjh3k36me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneBjH3k36me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netmm10_spec.rb | Ruby | mit | 19 | master | 476 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetMm9" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshrectcfstdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHreCtcfStdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehuvech3k36me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHuvecH3k36me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasehuh7pk_spec.rb | Ruby | mit | 19 | master | 814 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseHuh7Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehelas3h3k36me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHelas3H3k36me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbscmkuwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsCmkUwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nettaegut1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetTaeGut1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecdlyadhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 842 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecdlyadHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeaffyrnachipfilttransfragsk562cytosollongnonpolya_spec.rb | Ruby | mit | 19 | master | 902 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeAffyRnaChipFiltTransfragsK562CytosolLongpolya" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecdlyneohotspotsrep1_spec.rb | Ruby | mit | 19 | master | 845 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecdlyneoHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12878ximathudsonalphagrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 567 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12878ximatHudsonalphagrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBCon... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonesaech3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneSaecH3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonek562ctcfstdpk_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneK562CtcfStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshpfctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHpfCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonegm12878h2azstdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneGm12878H2azStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasegm18507pk_spec.rb | Ruby | mit | 19 | master | 823 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseGm18507Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairek562pk_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireK562Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasebjpkrep2_spec.rb | Ruby | mit | 19 | master | 800 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseBjPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayheesimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 854 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHeeSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhepg2pk_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHepg2Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicIn... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthelas3ripinputrbpassocrna_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHelas3RipinputRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/mgcgenes_spec.rb | Ruby | mit | 19 | master | 745 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::MgcGenes" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
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