source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsskmcuwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsSkmcUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraymcf7simplesignalrep1_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayMcf7SimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsnb4uwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsNb4UwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/chainponabe2_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ChainPonAbe2" do
describe "#find_by_interval" do
context 'given range chr1:1-15,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nthumchimpcodingdiff_spec.rb | Ruby | mit | 19 | master | 813 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NtHumChimpCodingDiff" do
describe "#find_by_interval" do
context "given range chr1:1-10,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonenb4h3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneNb4H3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneag10803h3k4me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneAg10803H3k4me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/hapmapalleleschimp_spec.rb | Ruby | mit | 19 | master | 798 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::HapmapAllelesChimp" do
describe "#find_by_interval" do
context "given range chr1:1-600,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.pars... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonebjh3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneBjH3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsgm12878hudsonalphagrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 557 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsGm12878HudsonalphagrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnecti... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag04450hotspotsrep2_spec.rb | Ruby | mit | 19 | master | 833 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg04450HotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshpfctcfstdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHpfCtcfStdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/trnas_spec.rb | Ruby | mit | 19 | master | 767 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::TRNAs" do
describe "#find_by_interval" do
context "given range chr1:1-10,000,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshmfctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHmfCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchipmcf7pol2pkrep1_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipMcf7Pol2PkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/agilentcgh4x44k_spec.rb | Ruby | mit | 19 | master | 788 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AgilentCgh4x44k" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonesknshrah3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneSknshraH3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeaffyrnachipfilttransfragshepg2nucleuslongnonpolya_spec.rb | Ruby | mit | 19 | master | 914 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeAffyRnaChipFiltTransfragsHepg2NucleusLongnonpolya" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehgfpkrep2_spec.rb | Ruby | mit | 19 | master | 803 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHgfPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhrpesimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHrpeSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthelas3pabpc1rbpassocrna_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHelas3Pabpc1RbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasemcf7pk_spec.rb | Ruby | mit | 19 | master | 814 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseMcf7Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/gbwarn_spec.rb | Ruby | mit | 19 | master | 394 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::GbWarn" do
describe ".find_by_acc" do
context 'given "BX161380"' do
it 'returns (r.reason == "invitroNorm")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::GbWarn.find_by_acc("BX16138... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm06990h3k36me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 537 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm06990H3k36me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm12864ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm12864CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonecaco2h3k27me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseag10803pkrep2_spec.rb | Ruby | mit | 19 | master | 815 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseAg10803PkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/illuminaprobesseq_spec.rb | Ruby | mit | 19 | master | 428 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::IlluminaProbesSeq" do
describe "#find_by_id" do
context 'given "ILMN_1825594"' do
it 'returns a record (r.seq =~ /\ACTCTCTAAAG/)' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::Illumi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehsmmh3k27acstdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHsmmH3k27acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshelas3ctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHelas3CtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehl60hotspotsrep2_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHl60HotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecllyhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 836 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecllyHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/nscanpep_spec.rb | Ruby | mit | 19 | master | 404 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NscanPep" do
describe "#find_by_name" do
context 'given "chr1.1.001.a"' do
it 'returns (r.protein ~= /\AMKERKLEK/)' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
r = Bio::Ucsc::Hg19::NscanPep.find_by_nam... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsnhdfneouwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsNhdfneoUwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/knowntou133_spec.rb | Ruby | mit | 19 | master | 355 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::KnownToU133" do
describe "#find_by_name" do
context 'given "uc004cov.3"' do
it 'returns (r.value == "224372_at")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
Bio::Ucsc::Hg19::KnownToU133.first.should be... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanytilinggm12878ripinputrbpassocrna_spec.rb | Ruby | mit | 19 | master | 551 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyTilingGm12878RipinputRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-160,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/xenorefgene_spec.rb | Ruby | mit | 19 | master | 454 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::XenoRefGene" do
describe "#find_by_interval" do
context "given range chr1:1-15,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/pgventer_spec.rb | Ruby | mit | 19 | master | 767 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::PgVenter" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehcpehotspotsrep2_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHcpeHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehuvech3k36me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHuvecH3k36me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchiphuveccmycpk_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipHuvecCmycPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthepg2ripinputrbpassocrna_spec.rb | Ruby | mit | 19 | master | 539 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHepg2RipinputRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairemedullopk_spec.rb | Ruby | mit | 19 | master | 829 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireMedulloPk" do
describe "#find_by_interval" do
context "given range chr1:1-5,000,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/netfelcat4_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::NetFelCat4" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmecpkrep1_spec.rb | Ruby | mit | 19 | master | 806 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmecPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterv... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehmvecdlyadpkrep2_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHmvecdlyadPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesth1hesct7tagrbpassocrna_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStH1hescT7tagRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-30,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbshcpectcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsHcpeCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhelas3simplesignalrep1_spec.rb | Ruby | mit | 19 | master | 863 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHelas3SimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbslncapandroopenchromgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 559 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsLncapAndroOpenchromgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnect... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/agilentcgh2x400k_spec.rb | Ruby | mit | 19 | master | 792 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AgilentCgh2x400k" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse(... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhcpepkv2_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHcpePkV2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehct116h3k4me3stdhotspotsrep2_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHct116H3k4me3StdHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehmech3k4me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHmecH3k4me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/agilentcgh8x60k_spec.rb | Ruby | mit | 19 | master | 788 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::AgilentCgh8x60k" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonegm12878h3k9acstdpk_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneGm12878H3k9acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasemcf7hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseMcf7HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromdnasefibroppk_spec.rb | Ruby | mit | 19 | master | 820 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromDnaseFibropPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicI... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthepg2t7tagrbpassocrna_spec.rb | Ruby | mit | 19 | master | 533 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHepg2T7tagRbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehelas3h3k4me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHelas3H3k4me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfgm06990pk_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfGm06990Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthepg2elavl1rbpassocrna_spec.rb | Ruby | mit | 19 | master | 535 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHepg2Elavl1RbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonegm06990h3k27me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneGm06990H3k27me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm12878ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm12878CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasecaco2pkrep2_spec.rb | Ruby | mit | 19 | master | 809 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseCaco2PkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInter... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistoneosteoblh3k36me3stdpk_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneOsteoblH3k36me3StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfhpfhotspots_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfHpfHotspots" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehct116hotspotsrep1_spec.rb | Ruby | mit | 19 | master | 830 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHct116HotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/ucsfchipseqh3k4me3braincoverage_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::UcsfChipSeqH3K4me3BrainCoverage" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonehuvecctcfstdpk_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneHuvecCtcfStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromchiph1hescpol2pk_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromChipH1hescPol2Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsag09309uwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsAg09309UwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehbmechotspotsrep2_spec.rb | Ruby | mit | 19 | master | 827 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHbmecHotspotsRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehepg2h3k27me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHepg2H3k27me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistoneosteoblh3k4me1stdpk_spec.rb | Ruby | mit | 19 | master | 521 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneOsteoblH3k4me1StdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsag04450uwstamgrowprotsitesrep1_spec.rb | Ruby | mit | 19 | master | 547 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsAg04450UwstamgrowprotSitesRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.co... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodehaibmethylrrbsnhbeuwstamgrowprotsitesrep2_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeHaibMethylRrbsNhbeUwstamgrowprotSitesRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/gc5base_spec.rb | Ruby | mit | 19 | master | 739 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::Gc5Base" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-50... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbswerirb1ctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsWerirb1CtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodebroadhistonenhekh3k27acstdpk_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeBroadHistoneNhekH3k27acStdPk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehrepkrep2v2_spec.rb | Ruby | mit | 19 | master | 495 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHrePkRep2V2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsgm12873ctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsGm12873CtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodesunyalbanygenesthepg2pabpc1rbpassocrna_spec.rb | Ruby | mit | 19 | master | 541 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeSunyAlbanyGeneStHepg2Pabpc1RbpAssocRna" do
describe "#find_by_interval" do
context "given range chr1:1-30,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.conne... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeopenchromfairegm12892pk_spec.rb | Ruby | mit | 19 | master | 823 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeOpenChromFaireGm12892Pk" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnaseskmchotspotsrep1_spec.rb | Ruby | mit | 19 | master | 824 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseSkmcHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/consindelshgmmcanfam_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::ConsIndelsHgMmCanFam" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbsbjctcfstdpkrep2_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsBjCtcfStdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/cpgislandext_spec.rb | Ruby | mit | 19 | master | 471 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::CpgIslandExt" do
describe "#find_by_interval" do
context 'given range chr1:1-500,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarraywi38ohtamsimplesignalrep2_spec.rb | Ruby | mit | 19 | master | 872 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayWi38OhtamSimpleSignalRep2" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/description_spec.rb | Ruby | mit | 19 | master | 346 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::Description" do
describe "#find" do
context "given range *(0..9)" do
it "has 10 items" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
Bio::Ucsc::Hg19::Description.find([*(0..9)]).should have(10).items
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwaffyexonarrayhpafsimplesignalrep1_spec.rb | Ruby | mit | 19 | master | 857 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwAffyExonArrayHpafSimpleSignalRep1" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonek562h3k36me3stdpkrep2_spec.rb | Ruby | mit | 19 | master | 519 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneK562H3k36me3StdPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehpfh3k4me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHpfH3k4me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/ucsfmedipseqbraincoverage_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::UcsfMedipSeqBrainCoverage" do
describe "#find_by_interval" do
context "given range chr1:1-20,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwtfbssaecctcfstdpkrep1_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwTfbsSaecCtcfStdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/transmapalnrefseq_spec.rb | Ruby | mit | 19 | master | 773 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::TransMapAlnRefSeq" do
describe "#find_by_interval" do
context "given range chr1:1-900,000" do
it "returns an array of results" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterval.parse... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdnasehpfpkrep2_spec.rb | Ruby | mit | 19 | master | 803 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDnaseHpfPkRep2" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it "returns an array of records" do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::GenomicInterva... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwdgfk562hotspots_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwDgfK562Hotspots" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistonehreh3k27me3stdhotspotsrep1_spec.rb | Ruby | mit | 19 | master | 529 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneHreH3k27me3StdHotspotsRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg19/wgencodeuwhistoneag04449h3k4me3stdpkrep1_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg19::WgEncodeUwHistoneAg04449H3k4me3StdPkRep1" do
describe "#find_by_interval" do
context "given range chr1:1-800,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg19::DBConnection.default
Bio::Ucsc::Hg19::DBConnection.connect
... |
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