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fastai/fastai
fastai/widgets/image_downloader.py
_url_params
def _url_params(size:str='>400*300', format:str='jpg') -> str: "Build Google Images Search Url params and return them as a string." _fmts = {'jpg':'ift:jpg','gif':'ift:gif','png':'ift:png','bmp':'ift:bmp', 'svg':'ift:svg','webp':'webp','ico':'ift:ico'} if size not in _img_sizes: raise RuntimeError(f"""Unexpected size argument value: {size}. See `widgets.image_downloader._img_sizes` for supported sizes.""") if format not in _fmts: raise RuntimeError(f"Unexpected image file format: {format}. Use jpg, gif, png, bmp, svg, webp, or ico.") return "&tbs=" + _img_sizes[size] + "," + _fmts[format]
python
def _url_params(size:str='>400*300', format:str='jpg') -> str: "Build Google Images Search Url params and return them as a string." _fmts = {'jpg':'ift:jpg','gif':'ift:gif','png':'ift:png','bmp':'ift:bmp', 'svg':'ift:svg','webp':'webp','ico':'ift:ico'} if size not in _img_sizes: raise RuntimeError(f"""Unexpected size argument value: {size}. See `widgets.image_downloader._img_sizes` for supported sizes.""") if format not in _fmts: raise RuntimeError(f"Unexpected image file format: {format}. Use jpg, gif, png, bmp, svg, webp, or ico.") return "&tbs=" + _img_sizes[size] + "," + _fmts[format]
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Build Google Images Search Url params and return them as a string.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L93-L101
train
fastai/fastai
fastai/widgets/image_downloader.py
_search_url
def _search_url(search_term:str, size:str='>400*300', format:str='jpg') -> str: "Return a Google Images Search URL for a given search term." return ('https://www.google.com/search?q=' + quote(search_term) + '&espv=2&biw=1366&bih=667&site=webhp&source=lnms&tbm=isch' + _url_params(size, format) + '&sa=X&ei=XosDVaCXD8TasATItgE&ved=0CAcQ_AUoAg')
python
def _search_url(search_term:str, size:str='>400*300', format:str='jpg') -> str: "Return a Google Images Search URL for a given search term." return ('https://www.google.com/search?q=' + quote(search_term) + '&espv=2&biw=1366&bih=667&site=webhp&source=lnms&tbm=isch' + _url_params(size, format) + '&sa=X&ei=XosDVaCXD8TasATItgE&ved=0CAcQ_AUoAg')
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Return a Google Images Search URL for a given search term.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L103-L107
train
fastai/fastai
fastai/widgets/image_downloader.py
_fetch_img_tuples
def _fetch_img_tuples(url:str, format:str='jpg', n_images:int=10) -> list: "Parse the Google Images Search for urls and return the image metadata as tuples (fname, url)." headers = {'User-Agent': 'Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/41.0.2228.0 Safari/537.36'} html = requests.get(url, headers=headers).text return _html_to_img_tuples(html, format=format, n_images=n_images)
python
def _fetch_img_tuples(url:str, format:str='jpg', n_images:int=10) -> list: "Parse the Google Images Search for urls and return the image metadata as tuples (fname, url)." headers = {'User-Agent': 'Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/41.0.2228.0 Safari/537.36'} html = requests.get(url, headers=headers).text return _html_to_img_tuples(html, format=format, n_images=n_images)
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Parse the Google Images Search for urls and return the image metadata as tuples (fname, url).
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L113-L117
train
fastai/fastai
fastai/widgets/image_downloader.py
_html_to_img_tuples
def _html_to_img_tuples(html:str, format:str='jpg', n_images:int=10) -> list: "Parse the google images html to img tuples containining `(fname, url)`" bs = BeautifulSoup(html, 'html.parser') img_tags = bs.find_all('div', {'class': 'rg_meta'}) metadata_dicts = (json.loads(e.text) for e in img_tags) img_tuples = ((_img_fname(d['ou']), d['ou']) for d in metadata_dicts if d['ity'] == format) return list(itertools.islice(img_tuples, n_images))
python
def _html_to_img_tuples(html:str, format:str='jpg', n_images:int=10) -> list: "Parse the google images html to img tuples containining `(fname, url)`" bs = BeautifulSoup(html, 'html.parser') img_tags = bs.find_all('div', {'class': 'rg_meta'}) metadata_dicts = (json.loads(e.text) for e in img_tags) img_tuples = ((_img_fname(d['ou']), d['ou']) for d in metadata_dicts if d['ity'] == format) return list(itertools.islice(img_tuples, n_images))
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Parse the google images html to img tuples containining `(fname, url)`
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L119-L125
train
fastai/fastai
fastai/widgets/image_downloader.py
_fetch_img_tuples_webdriver
def _fetch_img_tuples_webdriver(url:str, format:str='jpg', n_images:int=150) -> list: """ Parse the Google Images Search for urls and return the image metadata as tuples (fname, url). Use this for downloads of >100 images. Requires `selenium`. """ try: from selenium import webdriver from selenium.webdriver.common.keys import Keys except: print("""Looks like you're trying to download > 100 images and `selenium` is not installed. Try running `pip install selenium` to fix this. You'll also need chrome and `chromedriver` installed.""") options = webdriver.ChromeOptions() options.add_argument("--headless") try: driver = webdriver.Chrome(chrome_options=options) except: print("""Error initializing chromedriver. Check if it's in your path by running `which chromedriver`""") driver.set_window_size(1440, 900) driver.get(url) for i in range(n_images // 100 + 1): driver.execute_script("window.scrollTo(0, document.body.scrollHeight)") time.sleep(0.5 + random.random()/2.0) n_available = len(driver.find_elements_by_css_selector("div.rg_meta")) if n_available < n_images: raise ValueError(f"Requested {n_images} images, but only found {n_available}.") html = driver.page_source driver.close() return _html_to_img_tuples(html, format=format, n_images=n_images)
python
def _fetch_img_tuples_webdriver(url:str, format:str='jpg', n_images:int=150) -> list: """ Parse the Google Images Search for urls and return the image metadata as tuples (fname, url). Use this for downloads of >100 images. Requires `selenium`. """ try: from selenium import webdriver from selenium.webdriver.common.keys import Keys except: print("""Looks like you're trying to download > 100 images and `selenium` is not installed. Try running `pip install selenium` to fix this. You'll also need chrome and `chromedriver` installed.""") options = webdriver.ChromeOptions() options.add_argument("--headless") try: driver = webdriver.Chrome(chrome_options=options) except: print("""Error initializing chromedriver. Check if it's in your path by running `which chromedriver`""") driver.set_window_size(1440, 900) driver.get(url) for i in range(n_images // 100 + 1): driver.execute_script("window.scrollTo(0, document.body.scrollHeight)") time.sleep(0.5 + random.random()/2.0) n_available = len(driver.find_elements_by_css_selector("div.rg_meta")) if n_available < n_images: raise ValueError(f"Requested {n_images} images, but only found {n_available}.") html = driver.page_source driver.close() return _html_to_img_tuples(html, format=format, n_images=n_images)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L127-L157
train
fastai/fastai
fastai/widgets/image_downloader.py
_download_images
def _download_images(label_path:PathOrStr, img_tuples:list, max_workers:int=defaults.cpus, timeout:int=4) -> FilePathList: """ Downloads images in `img_tuples` to `label_path`. If the directory doesn't exist, it'll be created automatically. Uses `parallel` to speed things up in `max_workers` when the system has enough CPU cores. If something doesn't work, try setting up `max_workers=0` to debug. """ os.makedirs(Path(label_path), exist_ok=True) parallel( partial(_download_single_image, label_path, timeout=timeout), img_tuples, max_workers=max_workers) return get_image_files(label_path)
python
def _download_images(label_path:PathOrStr, img_tuples:list, max_workers:int=defaults.cpus, timeout:int=4) -> FilePathList: """ Downloads images in `img_tuples` to `label_path`. If the directory doesn't exist, it'll be created automatically. Uses `parallel` to speed things up in `max_workers` when the system has enough CPU cores. If something doesn't work, try setting up `max_workers=0` to debug. """ os.makedirs(Path(label_path), exist_ok=True) parallel( partial(_download_single_image, label_path, timeout=timeout), img_tuples, max_workers=max_workers) return get_image_files(label_path)
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Downloads images in `img_tuples` to `label_path`. If the directory doesn't exist, it'll be created automatically. Uses `parallel` to speed things up in `max_workers` when the system has enough CPU cores. If something doesn't work, try setting up `max_workers=0` to debug.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L159-L168
train
fastai/fastai
fastai/widgets/image_downloader.py
_download_single_image
def _download_single_image(label_path:Path, img_tuple:tuple, i:int, timeout:int=4) -> None: """ Downloads a single image from Google Search results to `label_path` given an `img_tuple` that contains `(fname, url)` of an image to download. `i` is just an iteration number `int`. """ suffix = re.findall(r'\.\w+?(?=(?:\?|$))', img_tuple[1]) suffix = suffix[0].lower() if len(suffix)>0 else '.jpg' fname = f"{i:08d}{suffix}" download_url(img_tuple[1], label_path/fname, timeout=timeout)
python
def _download_single_image(label_path:Path, img_tuple:tuple, i:int, timeout:int=4) -> None: """ Downloads a single image from Google Search results to `label_path` given an `img_tuple` that contains `(fname, url)` of an image to download. `i` is just an iteration number `int`. """ suffix = re.findall(r'\.\w+?(?=(?:\?|$))', img_tuple[1]) suffix = suffix[0].lower() if len(suffix)>0 else '.jpg' fname = f"{i:08d}{suffix}" download_url(img_tuple[1], label_path/fname, timeout=timeout)
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Downloads a single image from Google Search results to `label_path` given an `img_tuple` that contains `(fname, url)` of an image to download. `i` is just an iteration number `int`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L170-L179
train
fastai/fastai
fastai/widgets/image_downloader.py
ImageDownloader._init_ui
def _init_ui(self) -> VBox: "Initialize the widget UI and return the UI." self._search_input = Text(placeholder="What images to search for?") self._count_input = BoundedIntText(placeholder="How many pics?", value=10, min=1, max=5000, step=1, layout=Layout(width='60px')) self._size_input = Dropdown(options= _img_sizes.keys(), value='>400*300', layout=Layout(width='120px')) self._download_button = Button(description="Search & Download", icon="download", layout=Layout(width='200px')) self._download_button.on_click(self.on_download_button_click) self._output = Output() self._controls_pane = HBox([self._search_input, self._count_input, self._size_input, self._download_button], layout=Layout(width='auto', height='40px')) self._heading = "" self._download_complete_heading = "<h3>Download complete. Here are a few images</h3>" self._preview_header = widgets.HTML(self._heading, layout=Layout(height='60px')) self._img_pane = Box(layout=Layout(display='inline')) return VBox([self._controls_pane, self._preview_header, self._img_pane])
python
def _init_ui(self) -> VBox: "Initialize the widget UI and return the UI." self._search_input = Text(placeholder="What images to search for?") self._count_input = BoundedIntText(placeholder="How many pics?", value=10, min=1, max=5000, step=1, layout=Layout(width='60px')) self._size_input = Dropdown(options= _img_sizes.keys(), value='>400*300', layout=Layout(width='120px')) self._download_button = Button(description="Search & Download", icon="download", layout=Layout(width='200px')) self._download_button.on_click(self.on_download_button_click) self._output = Output() self._controls_pane = HBox([self._search_input, self._count_input, self._size_input, self._download_button], layout=Layout(width='auto', height='40px')) self._heading = "" self._download_complete_heading = "<h3>Download complete. Here are a few images</h3>" self._preview_header = widgets.HTML(self._heading, layout=Layout(height='60px')) self._img_pane = Box(layout=Layout(display='inline')) return VBox([self._controls_pane, self._preview_header, self._img_pane])
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L27-L42
train
fastai/fastai
fastai/widgets/image_downloader.py
ImageDownloader.clear_imgs
def clear_imgs(self) -> None: "Clear the widget's images preview pane." self._preview_header.value = self._heading self._img_pane.children = tuple()
python
def clear_imgs(self) -> None: "Clear the widget's images preview pane." self._preview_header.value = self._heading self._img_pane.children = tuple()
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Clear the widget's images preview pane.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L48-L51
train
fastai/fastai
fastai/widgets/image_downloader.py
ImageDownloader.validate_search_input
def validate_search_input(self) -> bool: "Check if input value is empty." input = self._search_input if input.value == str(): input.layout = Layout(border="solid 2px red", height='auto') else: self._search_input.layout = Layout() return input.value != str()
python
def validate_search_input(self) -> bool: "Check if input value is empty." input = self._search_input if input.value == str(): input.layout = Layout(border="solid 2px red", height='auto') else: self._search_input.layout = Layout() return input.value != str()
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Check if input value is empty.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L53-L58
train
fastai/fastai
fastai/widgets/image_downloader.py
ImageDownloader.on_download_button_click
def on_download_button_click(self, btn) -> None: "Download button click handler: validate search term and download images." term = self._search_input.value limit = int(self._count_input.value) size = self._size_input.value if not self.validate_search_input(): return self.clear_imgs() downloaded_images = download_google_images(self._path, term, n_images=limit, size=size) self.display_images_widgets(downloaded_images[:min(limit, 12)]) self._preview_header.value = self._download_complete_heading self.render()
python
def on_download_button_click(self, btn) -> None: "Download button click handler: validate search term and download images." term = self._search_input.value limit = int(self._count_input.value) size = self._size_input.value if not self.validate_search_input(): return self.clear_imgs() downloaded_images = download_google_images(self._path, term, n_images=limit, size=size) self.display_images_widgets(downloaded_images[:min(limit, 12)]) self._preview_header.value = self._download_complete_heading self.render()
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Download button click handler: validate search term and download images.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L60-L70
train
fastai/fastai
fastai/widgets/image_downloader.py
ImageDownloader.display_images_widgets
def display_images_widgets(self, fnames:list) -> None: "Display a few preview images in the notebook" imgs = [widgets.Image(value=open(f, 'rb').read(), width='200px') for f in fnames] self._img_pane.children = tuple(imgs)
python
def display_images_widgets(self, fnames:list) -> None: "Display a few preview images in the notebook" imgs = [widgets.Image(value=open(f, 'rb').read(), width='200px') for f in fnames] self._img_pane.children = tuple(imgs)
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Display a few preview images in the notebook
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_downloader.py#L72-L75
train
fastai/fastai
fastai/callbacks/lr_finder.py
LRFinder.on_train_begin
def on_train_begin(self, pbar, **kwargs:Any)->None: "Initialize optimizer and learner hyperparameters." setattr(pbar, 'clean_on_interrupt', True) self.learn.save('tmp') self.opt = self.learn.opt self.opt.lr = self.sched.start self.stop,self.best_loss = False,0. return {'skip_validate': True}
python
def on_train_begin(self, pbar, **kwargs:Any)->None: "Initialize optimizer and learner hyperparameters." setattr(pbar, 'clean_on_interrupt', True) self.learn.save('tmp') self.opt = self.learn.opt self.opt.lr = self.sched.start self.stop,self.best_loss = False,0. return {'skip_validate': True}
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Initialize optimizer and learner hyperparameters.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/callbacks/lr_finder.py#L16-L23
train
fastai/fastai
fastai/callbacks/lr_finder.py
LRFinder.on_batch_end
def on_batch_end(self, iteration:int, smooth_loss:TensorOrNumber, **kwargs:Any)->None: "Determine if loss has runaway and we should stop." if iteration==0 or smooth_loss < self.best_loss: self.best_loss = smooth_loss self.opt.lr = self.sched.step() if self.sched.is_done or (self.stop_div and (smooth_loss > 4*self.best_loss or torch.isnan(smooth_loss))): #We use the smoothed loss to decide on the stopping since it's less shaky. return {'stop_epoch': True, 'stop_training': True}
python
def on_batch_end(self, iteration:int, smooth_loss:TensorOrNumber, **kwargs:Any)->None: "Determine if loss has runaway and we should stop." if iteration==0 or smooth_loss < self.best_loss: self.best_loss = smooth_loss self.opt.lr = self.sched.step() if self.sched.is_done or (self.stop_div and (smooth_loss > 4*self.best_loss or torch.isnan(smooth_loss))): #We use the smoothed loss to decide on the stopping since it's less shaky. return {'stop_epoch': True, 'stop_training': True}
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/callbacks/lr_finder.py#L25-L31
train
fastai/fastai
fastai/callbacks/lr_finder.py
LRFinder.on_train_end
def on_train_end(self, **kwargs:Any)->None: "Cleanup learn model weights disturbed during LRFinder exploration." self.learn.load('tmp', purge=False) if hasattr(self.learn.model, 'reset'): self.learn.model.reset() for cb in self.callbacks: if hasattr(cb, 'reset'): cb.reset() print('LR Finder is complete, type {learner_name}.recorder.plot() to see the graph.')
python
def on_train_end(self, **kwargs:Any)->None: "Cleanup learn model weights disturbed during LRFinder exploration." self.learn.load('tmp', purge=False) if hasattr(self.learn.model, 'reset'): self.learn.model.reset() for cb in self.callbacks: if hasattr(cb, 'reset'): cb.reset() print('LR Finder is complete, type {learner_name}.recorder.plot() to see the graph.')
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Cleanup learn model weights disturbed during LRFinder exploration.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/callbacks/lr_finder.py#L33-L39
train
fastai/fastai
old/fastai/rnn_reg.py
dropout_mask
def dropout_mask(x, sz, dropout): """ Applies a dropout mask whose size is determined by passed argument 'sz'. Args: x (nn.Variable): A torch Variable object sz (tuple(int, int, int)): The expected size of the new tensor dropout (float): The dropout fraction to apply This method uses the bernoulli distribution to decide which activations to keep. Additionally, the sampled activations is rescaled is using the factor 1/(1 - dropout). In the example given below, one can see that approximately .8 fraction of the returned tensors are zero. Rescaling with the factor 1/(1 - 0.8) returns a tensor with 5's in the unit places. The official link to the pytorch bernoulli function is here: http://pytorch.org/docs/master/torch.html#torch.bernoulli Examples: >>> a_Var = torch.autograd.Variable(torch.Tensor(2, 3, 4).uniform_(0, 1), requires_grad=False) >>> a_Var Variable containing: (0 ,.,.) = 0.6890 0.5412 0.4303 0.8918 0.3871 0.7944 0.0791 0.5979 0.4575 0.7036 0.6186 0.7217 (1 ,.,.) = 0.8354 0.1690 0.1734 0.8099 0.6002 0.2602 0.7907 0.4446 0.5877 0.7464 0.4257 0.3386 [torch.FloatTensor of size 2x3x4] >>> a_mask = dropout_mask(a_Var.data, (1,a_Var.size(1),a_Var.size(2)), dropout=0.8) >>> a_mask (0 ,.,.) = 0 5 0 0 0 0 0 5 5 0 5 0 [torch.FloatTensor of size 1x3x4] """ return x.new(*sz).bernoulli_(1-dropout)/(1-dropout)
python
def dropout_mask(x, sz, dropout): """ Applies a dropout mask whose size is determined by passed argument 'sz'. Args: x (nn.Variable): A torch Variable object sz (tuple(int, int, int)): The expected size of the new tensor dropout (float): The dropout fraction to apply This method uses the bernoulli distribution to decide which activations to keep. Additionally, the sampled activations is rescaled is using the factor 1/(1 - dropout). In the example given below, one can see that approximately .8 fraction of the returned tensors are zero. Rescaling with the factor 1/(1 - 0.8) returns a tensor with 5's in the unit places. The official link to the pytorch bernoulli function is here: http://pytorch.org/docs/master/torch.html#torch.bernoulli Examples: >>> a_Var = torch.autograd.Variable(torch.Tensor(2, 3, 4).uniform_(0, 1), requires_grad=False) >>> a_Var Variable containing: (0 ,.,.) = 0.6890 0.5412 0.4303 0.8918 0.3871 0.7944 0.0791 0.5979 0.4575 0.7036 0.6186 0.7217 (1 ,.,.) = 0.8354 0.1690 0.1734 0.8099 0.6002 0.2602 0.7907 0.4446 0.5877 0.7464 0.4257 0.3386 [torch.FloatTensor of size 2x3x4] >>> a_mask = dropout_mask(a_Var.data, (1,a_Var.size(1),a_Var.size(2)), dropout=0.8) >>> a_mask (0 ,.,.) = 0 5 0 0 0 0 0 5 5 0 5 0 [torch.FloatTensor of size 1x3x4] """ return x.new(*sz).bernoulli_(1-dropout)/(1-dropout)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/rnn_reg.py#L9-L47
train
fastai/fastai
old/fastai/rnn_reg.py
WeightDrop._setup
def _setup(self): """ for each string defined in self.weights, the corresponding attribute in the wrapped module is referenced, then deleted, and subsequently registered as a new parameter with a slightly modified name. Args: None Returns: None """ if isinstance(self.module, torch.nn.RNNBase): self.module.flatten_parameters = noop for name_w in self.weights: w = getattr(self.module, name_w) del self.module._parameters[name_w] self.module.register_parameter(name_w + '_raw', nn.Parameter(w.data))
python
def _setup(self): """ for each string defined in self.weights, the corresponding attribute in the wrapped module is referenced, then deleted, and subsequently registered as a new parameter with a slightly modified name. Args: None Returns: None """ if isinstance(self.module, torch.nn.RNNBase): self.module.flatten_parameters = noop for name_w in self.weights: w = getattr(self.module, name_w) del self.module._parameters[name_w] self.module.register_parameter(name_w + '_raw', nn.Parameter(w.data))
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for each string defined in self.weights, the corresponding attribute in the wrapped module is referenced, then deleted, and subsequently registered as a new parameter with a slightly modified name. Args: None Returns: None
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/rnn_reg.py#L79-L94
train
fastai/fastai
old/fastai/rnn_reg.py
WeightDrop._setweights
def _setweights(self): """ Uses pytorch's built-in dropout function to apply dropout to the parameters of the wrapped module. Args: None Returns: None """ for name_w in self.weights: raw_w = getattr(self.module, name_w + '_raw') w = torch.nn.functional.dropout(raw_w, p=self.dropout, training=self.training) if hasattr(self.module, name_w): delattr(self.module, name_w) setattr(self.module, name_w, w)
python
def _setweights(self): """ Uses pytorch's built-in dropout function to apply dropout to the parameters of the wrapped module. Args: None Returns: None """ for name_w in self.weights: raw_w = getattr(self.module, name_w + '_raw') w = torch.nn.functional.dropout(raw_w, p=self.dropout, training=self.training) if hasattr(self.module, name_w): delattr(self.module, name_w) setattr(self.module, name_w, w)
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Uses pytorch's built-in dropout function to apply dropout to the parameters of the wrapped module. Args: None Returns: None
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/rnn_reg.py#L97-L111
train
fastai/fastai
fastai/basic_data.py
load_data
def load_data(path:PathOrStr, file:PathLikeOrBinaryStream='data_save.pkl', bs:int=64, val_bs:int=None, num_workers:int=defaults.cpus, dl_tfms:Optional[Collection[Callable]]=None, device:torch.device=None, collate_fn:Callable=data_collate, no_check:bool=False, **kwargs)->DataBunch: "Load a saved `DataBunch` from `path/file`. `file` can be file-like (file or buffer)" source = Path(path)/file if is_pathlike(file) else file ll = torch.load(source, map_location='cpu') if defaults.device == torch.device('cpu') else torch.load(source) return ll.databunch(path=path, bs=bs, val_bs=val_bs, num_workers=num_workers, dl_tfms=dl_tfms, device=device, collate_fn=collate_fn, no_check=no_check, **kwargs)
python
def load_data(path:PathOrStr, file:PathLikeOrBinaryStream='data_save.pkl', bs:int=64, val_bs:int=None, num_workers:int=defaults.cpus, dl_tfms:Optional[Collection[Callable]]=None, device:torch.device=None, collate_fn:Callable=data_collate, no_check:bool=False, **kwargs)->DataBunch: "Load a saved `DataBunch` from `path/file`. `file` can be file-like (file or buffer)" source = Path(path)/file if is_pathlike(file) else file ll = torch.load(source, map_location='cpu') if defaults.device == torch.device('cpu') else torch.load(source) return ll.databunch(path=path, bs=bs, val_bs=val_bs, num_workers=num_workers, dl_tfms=dl_tfms, device=device, collate_fn=collate_fn, no_check=no_check, **kwargs)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L272-L279
train
fastai/fastai
fastai/basic_data.py
DataBunch.create
def create(cls, train_ds:Dataset, valid_ds:Dataset, test_ds:Optional[Dataset]=None, path:PathOrStr='.', bs:int=64, val_bs:int=None, num_workers:int=defaults.cpus, dl_tfms:Optional[Collection[Callable]]=None, device:torch.device=None, collate_fn:Callable=data_collate, no_check:bool=False, **dl_kwargs)->'DataBunch': "Create a `DataBunch` from `train_ds`, `valid_ds` and maybe `test_ds` with a batch size of `bs`. Passes `**dl_kwargs` to `DataLoader()`" datasets = cls._init_ds(train_ds, valid_ds, test_ds) val_bs = ifnone(val_bs, bs) dls = [DataLoader(d, b, shuffle=s, drop_last=s, num_workers=num_workers, **dl_kwargs) for d,b,s in zip(datasets, (bs,val_bs,val_bs,val_bs), (True,False,False,False)) if d is not None] return cls(*dls, path=path, device=device, dl_tfms=dl_tfms, collate_fn=collate_fn, no_check=no_check)
python
def create(cls, train_ds:Dataset, valid_ds:Dataset, test_ds:Optional[Dataset]=None, path:PathOrStr='.', bs:int=64, val_bs:int=None, num_workers:int=defaults.cpus, dl_tfms:Optional[Collection[Callable]]=None, device:torch.device=None, collate_fn:Callable=data_collate, no_check:bool=False, **dl_kwargs)->'DataBunch': "Create a `DataBunch` from `train_ds`, `valid_ds` and maybe `test_ds` with a batch size of `bs`. Passes `**dl_kwargs` to `DataLoader()`" datasets = cls._init_ds(train_ds, valid_ds, test_ds) val_bs = ifnone(val_bs, bs) dls = [DataLoader(d, b, shuffle=s, drop_last=s, num_workers=num_workers, **dl_kwargs) for d,b,s in zip(datasets, (bs,val_bs,val_bs,val_bs), (True,False,False,False)) if d is not None] return cls(*dls, path=path, device=device, dl_tfms=dl_tfms, collate_fn=collate_fn, no_check=no_check)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L112-L120
train
fastai/fastai
fastai/basic_data.py
DataBunch.dl
def dl(self, ds_type:DatasetType=DatasetType.Valid)->DeviceDataLoader: "Returns appropriate `Dataset` for validation, training, or test (`ds_type`)." #TODO: refactor return (self.train_dl if ds_type == DatasetType.Train else self.test_dl if ds_type == DatasetType.Test else self.valid_dl if ds_type == DatasetType.Valid else self.single_dl if ds_type == DatasetType.Single else self.fix_dl)
python
def dl(self, ds_type:DatasetType=DatasetType.Valid)->DeviceDataLoader: "Returns appropriate `Dataset` for validation, training, or test (`ds_type`)." #TODO: refactor return (self.train_dl if ds_type == DatasetType.Train else self.test_dl if ds_type == DatasetType.Test else self.valid_dl if ds_type == DatasetType.Valid else self.single_dl if ds_type == DatasetType.Single else self.fix_dl)
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Returns appropriate `Dataset` for validation, training, or test (`ds_type`).
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L125-L132
train
fastai/fastai
fastai/basic_data.py
DataBunch.dls
def dls(self)->List[DeviceDataLoader]: "Returns a list of all DeviceDataLoaders. If you need a specific DeviceDataLoader, access via the relevant property (`train_dl`, `valid_dl`, etc) as the index of DLs in this list is not guaranteed to remain constant." res = [self.train_dl, self.fix_dl, self.single_dl] # Preserve the original ordering of Train, Valid, Fix, Single, Test Data Loaders # (Unknown/not verified as of 1.0.47 whether there are other methods explicitly using DLs their list index) if self.valid_dl: res.insert(1, self.valid_dl) return res if not self.test_dl else res + [self.test_dl]
python
def dls(self)->List[DeviceDataLoader]: "Returns a list of all DeviceDataLoaders. If you need a specific DeviceDataLoader, access via the relevant property (`train_dl`, `valid_dl`, etc) as the index of DLs in this list is not guaranteed to remain constant." res = [self.train_dl, self.fix_dl, self.single_dl] # Preserve the original ordering of Train, Valid, Fix, Single, Test Data Loaders # (Unknown/not verified as of 1.0.47 whether there are other methods explicitly using DLs their list index) if self.valid_dl: res.insert(1, self.valid_dl) return res if not self.test_dl else res + [self.test_dl]
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Returns a list of all DeviceDataLoaders. If you need a specific DeviceDataLoader, access via the relevant property (`train_dl`, `valid_dl`, etc) as the index of DLs in this list is not guaranteed to remain constant.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L135-L141
train
fastai/fastai
fastai/basic_data.py
DataBunch.save
def save(self, file:PathLikeOrBinaryStream= 'data_save.pkl')->None: "Save the `DataBunch` in `self.path/file`. `file` can be file-like (file or buffer)" if not getattr(self, 'label_list', False): warn("Serializing the `DataBunch` only works when you created it using the data block API.") return try_save(self.label_list, self.path, file)
python
def save(self, file:PathLikeOrBinaryStream= 'data_save.pkl')->None: "Save the `DataBunch` in `self.path/file`. `file` can be file-like (file or buffer)" if not getattr(self, 'label_list', False): warn("Serializing the `DataBunch` only works when you created it using the data block API.") return try_save(self.label_list, self.path, file)
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Save the `DataBunch` in `self.path/file`. `file` can be file-like (file or buffer)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L149-L154
train
fastai/fastai
fastai/basic_data.py
DataBunch.one_batch
def one_batch(self, ds_type:DatasetType=DatasetType.Train, detach:bool=True, denorm:bool=True, cpu:bool=True)->Collection[Tensor]: "Get one batch from the data loader of `ds_type`. Optionally `detach` and `denorm`." dl = self.dl(ds_type) w = self.num_workers self.num_workers = 0 try: x,y = next(iter(dl)) finally: self.num_workers = w if detach: x,y = to_detach(x,cpu=cpu),to_detach(y,cpu=cpu) norm = getattr(self,'norm',False) if denorm and norm: x = self.denorm(x) if norm.keywords.get('do_y',False): y = self.denorm(y, do_x=True) return x,y
python
def one_batch(self, ds_type:DatasetType=DatasetType.Train, detach:bool=True, denorm:bool=True, cpu:bool=True)->Collection[Tensor]: "Get one batch from the data loader of `ds_type`. Optionally `detach` and `denorm`." dl = self.dl(ds_type) w = self.num_workers self.num_workers = 0 try: x,y = next(iter(dl)) finally: self.num_workers = w if detach: x,y = to_detach(x,cpu=cpu),to_detach(y,cpu=cpu) norm = getattr(self,'norm',False) if denorm and norm: x = self.denorm(x) if norm.keywords.get('do_y',False): y = self.denorm(y, do_x=True) return x,y
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L163-L175
train
fastai/fastai
fastai/basic_data.py
DataBunch.one_item
def one_item(self, item, detach:bool=False, denorm:bool=False, cpu:bool=False): "Get `item` into a batch. Optionally `detach` and `denorm`." ds = self.single_ds with ds.set_item(item): return self.one_batch(ds_type=DatasetType.Single, detach=detach, denorm=denorm, cpu=cpu)
python
def one_item(self, item, detach:bool=False, denorm:bool=False, cpu:bool=False): "Get `item` into a batch. Optionally `detach` and `denorm`." ds = self.single_ds with ds.set_item(item): return self.one_batch(ds_type=DatasetType.Single, detach=detach, denorm=denorm, cpu=cpu)
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Get `item` into a batch. Optionally `detach` and `denorm`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L177-L181
train
fastai/fastai
fastai/basic_data.py
DataBunch.show_batch
def show_batch(self, rows:int=5, ds_type:DatasetType=DatasetType.Train, reverse:bool=False, **kwargs)->None: "Show a batch of data in `ds_type` on a few `rows`." x,y = self.one_batch(ds_type, True, True) if reverse: x,y = x.flip(0),y.flip(0) n_items = rows **2 if self.train_ds.x._square_show else rows if self.dl(ds_type).batch_size < n_items: n_items = self.dl(ds_type).batch_size xs = [self.train_ds.x.reconstruct(grab_idx(x, i)) for i in range(n_items)] #TODO: get rid of has_arg if possible if has_arg(self.train_ds.y.reconstruct, 'x'): ys = [self.train_ds.y.reconstruct(grab_idx(y, i), x=x) for i,x in enumerate(xs)] else : ys = [self.train_ds.y.reconstruct(grab_idx(y, i)) for i in range(n_items)] self.train_ds.x.show_xys(xs, ys, **kwargs)
python
def show_batch(self, rows:int=5, ds_type:DatasetType=DatasetType.Train, reverse:bool=False, **kwargs)->None: "Show a batch of data in `ds_type` on a few `rows`." x,y = self.one_batch(ds_type, True, True) if reverse: x,y = x.flip(0),y.flip(0) n_items = rows **2 if self.train_ds.x._square_show else rows if self.dl(ds_type).batch_size < n_items: n_items = self.dl(ds_type).batch_size xs = [self.train_ds.x.reconstruct(grab_idx(x, i)) for i in range(n_items)] #TODO: get rid of has_arg if possible if has_arg(self.train_ds.y.reconstruct, 'x'): ys = [self.train_ds.y.reconstruct(grab_idx(y, i), x=x) for i,x in enumerate(xs)] else : ys = [self.train_ds.y.reconstruct(grab_idx(y, i)) for i in range(n_items)] self.train_ds.x.show_xys(xs, ys, **kwargs)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L183-L194
train
fastai/fastai
fastai/basic_data.py
DataBunch.export
def export(self, file:PathLikeOrBinaryStream='export.pkl'): "Export the minimal state of `self` for inference in `self.path/file`. `file` can be file-like (file or buffer)" xtra = dict(normalize=self.norm.keywords) if getattr(self, 'norm', False) else {} try_save(self.valid_ds.get_state(**xtra), self.path, file)
python
def export(self, file:PathLikeOrBinaryStream='export.pkl'): "Export the minimal state of `self` for inference in `self.path/file`. `file` can be file-like (file or buffer)" xtra = dict(normalize=self.norm.keywords) if getattr(self, 'norm', False) else {} try_save(self.valid_ds.get_state(**xtra), self.path, file)
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Export the minimal state of `self` for inference in `self.path/file`. `file` can be file-like (file or buffer)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L196-L199
train
fastai/fastai
fastai/basic_data.py
DataBunch.sanity_check
def sanity_check(self): "Check the underlying data in the training set can be properly loaded." final_message = "You can deactivate this warning by passing `no_check=True`." if not hasattr(self.train_ds, 'items') or len(self.train_ds.items) == 0 or not hasattr(self.train_dl, 'batch_sampler'): return if len(self.train_dl) == 0: warn(f"""Your training dataloader is empty, you have only {len(self.train_dl.dataset)} items in your training set. Your batch size is {self.train_dl.batch_size}, you should lower it.""") print(final_message) return idx = next(iter(self.train_dl.batch_sampler)) samples,fails = [],[] for i in idx: try: samples.append(self.train_dl.dataset[i]) except: fails.append(i) if len(fails) > 0: warn_msg = "There seems to be something wrong with your dataset, for example, in the first batch can't access" if len(fails) == len(idx): warn_msg += f" any element of self.train_ds.\nTried: {show_some(idx)}" else: warn_msg += f" these elements in self.train_ds: {show_some(fails)}" warn(warn_msg) print(final_message) return try: batch = self.collate_fn(samples) except: message = "It's not possible to collate samples of your dataset together in a batch." try: shapes = [[o[i].data.shape for o in samples] for i in range(2)] message += f'\nShapes of the inputs/targets:\n{shapes}' except: pass warn(message) print(final_message)
python
def sanity_check(self): "Check the underlying data in the training set can be properly loaded." final_message = "You can deactivate this warning by passing `no_check=True`." if not hasattr(self.train_ds, 'items') or len(self.train_ds.items) == 0 or not hasattr(self.train_dl, 'batch_sampler'): return if len(self.train_dl) == 0: warn(f"""Your training dataloader is empty, you have only {len(self.train_dl.dataset)} items in your training set. Your batch size is {self.train_dl.batch_size}, you should lower it.""") print(final_message) return idx = next(iter(self.train_dl.batch_sampler)) samples,fails = [],[] for i in idx: try: samples.append(self.train_dl.dataset[i]) except: fails.append(i) if len(fails) > 0: warn_msg = "There seems to be something wrong with your dataset, for example, in the first batch can't access" if len(fails) == len(idx): warn_msg += f" any element of self.train_ds.\nTried: {show_some(idx)}" else: warn_msg += f" these elements in self.train_ds: {show_some(fails)}" warn(warn_msg) print(final_message) return try: batch = self.collate_fn(samples) except: message = "It's not possible to collate samples of your dataset together in a batch." try: shapes = [[o[i].data.shape for o in samples] for i in range(2)] message += f'\nShapes of the inputs/targets:\n{shapes}' except: pass warn(message) print(final_message)
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Check the underlying data in the training set can be properly loaded.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/basic_data.py#L239-L270
train
fastai/fastai
fastai/train.py
one_cycle_scheduler
def one_cycle_scheduler(lr_max:float, **kwargs:Any)->OneCycleScheduler: "Instantiate a `OneCycleScheduler` with `lr_max`." return partial(OneCycleScheduler, lr_max=lr_max, **kwargs)
python
def one_cycle_scheduler(lr_max:float, **kwargs:Any)->OneCycleScheduler: "Instantiate a `OneCycleScheduler` with `lr_max`." return partial(OneCycleScheduler, lr_max=lr_max, **kwargs)
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Instantiate a `OneCycleScheduler` with `lr_max`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L10-L12
train
fastai/fastai
fastai/train.py
fit_one_cycle
def fit_one_cycle(learn:Learner, cyc_len:int, max_lr:Union[Floats,slice]=defaults.lr, moms:Tuple[float,float]=(0.95,0.85), div_factor:float=25., pct_start:float=0.3, final_div:float=None, wd:float=None, callbacks:Optional[CallbackList]=None, tot_epochs:int=None, start_epoch:int=None)->None: "Fit a model following the 1cycle policy." max_lr = learn.lr_range(max_lr) callbacks = listify(callbacks) callbacks.append(OneCycleScheduler(learn, max_lr, moms=moms, div_factor=div_factor, pct_start=pct_start, final_div=final_div, tot_epochs=tot_epochs, start_epoch=start_epoch)) learn.fit(cyc_len, max_lr, wd=wd, callbacks=callbacks)
python
def fit_one_cycle(learn:Learner, cyc_len:int, max_lr:Union[Floats,slice]=defaults.lr, moms:Tuple[float,float]=(0.95,0.85), div_factor:float=25., pct_start:float=0.3, final_div:float=None, wd:float=None, callbacks:Optional[CallbackList]=None, tot_epochs:int=None, start_epoch:int=None)->None: "Fit a model following the 1cycle policy." max_lr = learn.lr_range(max_lr) callbacks = listify(callbacks) callbacks.append(OneCycleScheduler(learn, max_lr, moms=moms, div_factor=div_factor, pct_start=pct_start, final_div=final_div, tot_epochs=tot_epochs, start_epoch=start_epoch)) learn.fit(cyc_len, max_lr, wd=wd, callbacks=callbacks)
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Fit a model following the 1cycle policy.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L14-L22
train
fastai/fastai
fastai/train.py
lr_find
def lr_find(learn:Learner, start_lr:Floats=1e-7, end_lr:Floats=10, num_it:int=100, stop_div:bool=True, wd:float=None): "Explore lr from `start_lr` to `end_lr` over `num_it` iterations in `learn`. If `stop_div`, stops when loss diverges." start_lr = learn.lr_range(start_lr) start_lr = np.array(start_lr) if is_listy(start_lr) else start_lr end_lr = learn.lr_range(end_lr) end_lr = np.array(end_lr) if is_listy(end_lr) else end_lr cb = LRFinder(learn, start_lr, end_lr, num_it, stop_div) epochs = int(np.ceil(num_it/len(learn.data.train_dl))) learn.fit(epochs, start_lr, callbacks=[cb], wd=wd)
python
def lr_find(learn:Learner, start_lr:Floats=1e-7, end_lr:Floats=10, num_it:int=100, stop_div:bool=True, wd:float=None): "Explore lr from `start_lr` to `end_lr` over `num_it` iterations in `learn`. If `stop_div`, stops when loss diverges." start_lr = learn.lr_range(start_lr) start_lr = np.array(start_lr) if is_listy(start_lr) else start_lr end_lr = learn.lr_range(end_lr) end_lr = np.array(end_lr) if is_listy(end_lr) else end_lr cb = LRFinder(learn, start_lr, end_lr, num_it, stop_div) epochs = int(np.ceil(num_it/len(learn.data.train_dl))) learn.fit(epochs, start_lr, callbacks=[cb], wd=wd)
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Explore lr from `start_lr` to `end_lr` over `num_it` iterations in `learn`. If `stop_div`, stops when loss diverges.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L24-L32
train
fastai/fastai
fastai/train.py
to_fp16
def to_fp16(learn:Learner, loss_scale:float=None, max_noskip:int=1000, dynamic:bool=True, clip:float=None, flat_master:bool=False, max_scale:float=2**24)->Learner: "Put `learn` in FP16 precision mode." learn.to_fp32() learn.model = model2half(learn.model) learn.data.add_tfm(batch_to_half) learn.mp_cb = MixedPrecision(learn, loss_scale=loss_scale, max_noskip=max_noskip, dynamic=dynamic, clip=clip, flat_master=flat_master, max_scale=max_scale) learn.callbacks.append(learn.mp_cb) return learn
python
def to_fp16(learn:Learner, loss_scale:float=None, max_noskip:int=1000, dynamic:bool=True, clip:float=None, flat_master:bool=False, max_scale:float=2**24)->Learner: "Put `learn` in FP16 precision mode." learn.to_fp32() learn.model = model2half(learn.model) learn.data.add_tfm(batch_to_half) learn.mp_cb = MixedPrecision(learn, loss_scale=loss_scale, max_noskip=max_noskip, dynamic=dynamic, clip=clip, flat_master=flat_master, max_scale=max_scale) learn.callbacks.append(learn.mp_cb) return learn
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Put `learn` in FP16 precision mode.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L34-L43
train
fastai/fastai
fastai/train.py
to_fp32
def to_fp32(learn:Learner): "Put `learn` back to FP32 precision mode." learn.data.remove_tfm(batch_to_half) for cb in learn.callbacks: if isinstance(cb, MixedPrecision): learn.callbacks.remove(cb) learn.model = learn.model.float() return learn
python
def to_fp32(learn:Learner): "Put `learn` back to FP32 precision mode." learn.data.remove_tfm(batch_to_half) for cb in learn.callbacks: if isinstance(cb, MixedPrecision): learn.callbacks.remove(cb) learn.model = learn.model.float() return learn
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Put `learn` back to FP32 precision mode.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L45-L51
train
fastai/fastai
fastai/train.py
mixup
def mixup(learn:Learner, alpha:float=0.4, stack_x:bool=False, stack_y:bool=True) -> Learner: "Add mixup https://arxiv.org/abs/1710.09412 to `learn`." learn.callback_fns.append(partial(MixUpCallback, alpha=alpha, stack_x=stack_x, stack_y=stack_y)) return learn
python
def mixup(learn:Learner, alpha:float=0.4, stack_x:bool=False, stack_y:bool=True) -> Learner: "Add mixup https://arxiv.org/abs/1710.09412 to `learn`." learn.callback_fns.append(partial(MixUpCallback, alpha=alpha, stack_x=stack_x, stack_y=stack_y)) return learn
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Add mixup https://arxiv.org/abs/1710.09412 to `learn`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L53-L56
train
fastai/fastai
fastai/train.py
clip_grad
def clip_grad(learn:Learner, clip:float=0.1)->Learner: "Add gradient clipping of `clip` during training." learn.callback_fns.append(partial(GradientClipping, clip=clip)) return learn
python
def clip_grad(learn:Learner, clip:float=0.1)->Learner: "Add gradient clipping of `clip` during training." learn.callback_fns.append(partial(GradientClipping, clip=clip)) return learn
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Add gradient clipping of `clip` during training.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L93-L96
train
fastai/fastai
fastai/train.py
_learner_interpret
def _learner_interpret(learn:Learner, ds_type:DatasetType=DatasetType.Valid): "Create a `ClassificationInterpretation` object from `learner` on `ds_type` with `tta`." return ClassificationInterpretation.from_learner(learn, ds_type=ds_type)
python
def _learner_interpret(learn:Learner, ds_type:DatasetType=DatasetType.Valid): "Create a `ClassificationInterpretation` object from `learner` on `ds_type` with `tta`." return ClassificationInterpretation.from_learner(learn, ds_type=ds_type)
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Create a `ClassificationInterpretation` object from `learner` on `ds_type` with `tta`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L198-L200
train
fastai/fastai
fastai/train.py
ShowGraph.on_epoch_end
def on_epoch_end(self, n_epochs:int, last_metrics:MetricsList, **kwargs)->bool: "If we have `last_metrics` plot them in our pbar graph" if last_metrics is not None and np.any(last_metrics): rec = self.learn.recorder iters = range_of(rec.losses) val_iter = np.array(rec.nb_batches).cumsum() x_bounds = (0, (n_epochs - len(rec.nb_batches)) * rec.nb_batches[-1] + len(rec.losses)) y_bounds = (0, max((max(Tensor(rec.losses)), max(Tensor(rec.val_losses))))) rec.pbar.update_graph([(iters, rec.losses), (val_iter, rec.val_losses)], x_bounds, y_bounds) return {}
python
def on_epoch_end(self, n_epochs:int, last_metrics:MetricsList, **kwargs)->bool: "If we have `last_metrics` plot them in our pbar graph" if last_metrics is not None and np.any(last_metrics): rec = self.learn.recorder iters = range_of(rec.losses) val_iter = np.array(rec.nb_batches).cumsum() x_bounds = (0, (n_epochs - len(rec.nb_batches)) * rec.nb_batches[-1] + len(rec.losses)) y_bounds = (0, max((max(Tensor(rec.losses)), max(Tensor(rec.val_losses))))) rec.pbar.update_graph([(iters, rec.losses), (val_iter, rec.val_losses)], x_bounds, y_bounds) return {}
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If we have `last_metrics` plot them in our pbar graph
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L66-L75
train
fastai/fastai
fastai/train.py
GradientClipping.on_backward_end
def on_backward_end(self, **kwargs): "Clip the gradient before the optimizer step." if self.clip: nn.utils.clip_grad_norm_(self.learn.model.parameters(), self.clip)
python
def on_backward_end(self, **kwargs): "Clip the gradient before the optimizer step." if self.clip: nn.utils.clip_grad_norm_(self.learn.model.parameters(), self.clip)
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Clip the gradient before the optimizer step.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L89-L91
train
fastai/fastai
fastai/train.py
AccumulateScheduler.on_train_begin
def on_train_begin(self, **kwargs): "check if loss is reduction" if hasattr(self.loss_func, "reduction") and (self.loss_func.reduction != "sum"): warn("For better gradients consider 'reduction=sum'")
python
def on_train_begin(self, **kwargs): "check if loss is reduction" if hasattr(self.loss_func, "reduction") and (self.loss_func.reduction != "sum"): warn("For better gradients consider 'reduction=sum'")
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check if loss is reduction
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L106-L109
train
fastai/fastai
fastai/train.py
AccumulateScheduler.on_batch_begin
def on_batch_begin(self, last_input, last_target, **kwargs): "accumulate samples and batches" self.acc_samples += last_input.shape[0] self.acc_batches += 1
python
def on_batch_begin(self, last_input, last_target, **kwargs): "accumulate samples and batches" self.acc_samples += last_input.shape[0] self.acc_batches += 1
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accumulate samples and batches
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L115-L118
train
fastai/fastai
fastai/train.py
AccumulateScheduler.on_backward_end
def on_backward_end(self, **kwargs): "accumulated step and reset samples, True will result in no stepping" if (self.acc_batches % self.n_step) == 0: for p in (self.learn.model.parameters()): if p.requires_grad: p.grad.div_(self.acc_samples) self.acc_samples = 0 else: return {'skip_step':True, 'skip_zero':True}
python
def on_backward_end(self, **kwargs): "accumulated step and reset samples, True will result in no stepping" if (self.acc_batches % self.n_step) == 0: for p in (self.learn.model.parameters()): if p.requires_grad: p.grad.div_(self.acc_samples) self.acc_samples = 0 else: return {'skip_step':True, 'skip_zero':True}
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accumulated step and reset samples, True will result in no stepping
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L120-L126
train
fastai/fastai
fastai/train.py
AccumulateScheduler.on_epoch_end
def on_epoch_end(self, **kwargs): "step the rest of the accumulated grads if not perfectly divisible" for p in (self.learn.model.parameters()): if p.requires_grad: p.grad.div_(self.acc_samples) if not self.drop_last: self.learn.opt.step() self.learn.opt.zero_grad()
python
def on_epoch_end(self, **kwargs): "step the rest of the accumulated grads if not perfectly divisible" for p in (self.learn.model.parameters()): if p.requires_grad: p.grad.div_(self.acc_samples) if not self.drop_last: self.learn.opt.step() self.learn.opt.zero_grad()
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step the rest of the accumulated grads if not perfectly divisible
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L128-L133
train
fastai/fastai
fastai/train.py
ClassificationInterpretation.from_learner
def from_learner(cls, learn: Learner, ds_type:DatasetType=DatasetType.Valid): "Create an instance of `ClassificationInterpretation`" preds = learn.get_preds(ds_type=ds_type, with_loss=True) return cls(learn, *preds)
python
def from_learner(cls, learn: Learner, ds_type:DatasetType=DatasetType.Valid): "Create an instance of `ClassificationInterpretation`" preds = learn.get_preds(ds_type=ds_type, with_loss=True) return cls(learn, *preds)
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Create an instance of `ClassificationInterpretation`
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L144-L147
train
fastai/fastai
fastai/train.py
ClassificationInterpretation.confusion_matrix
def confusion_matrix(self, slice_size:int=1): "Confusion matrix as an `np.ndarray`." x=torch.arange(0,self.data.c) if slice_size is None: cm = ((self.pred_class==x[:,None]) & (self.y_true==x[:,None,None])).sum(2) else: cm = torch.zeros(self.data.c, self.data.c, dtype=x.dtype) for i in range(0, self.y_true.shape[0], slice_size): cm_slice = ((self.pred_class[i:i+slice_size]==x[:,None]) & (self.y_true[i:i+slice_size]==x[:,None,None])).sum(2) torch.add(cm, cm_slice, out=cm) return to_np(cm)
python
def confusion_matrix(self, slice_size:int=1): "Confusion matrix as an `np.ndarray`." x=torch.arange(0,self.data.c) if slice_size is None: cm = ((self.pred_class==x[:,None]) & (self.y_true==x[:,None,None])).sum(2) else: cm = torch.zeros(self.data.c, self.data.c, dtype=x.dtype) for i in range(0, self.y_true.shape[0], slice_size): cm_slice = ((self.pred_class[i:i+slice_size]==x[:,None]) & (self.y_true[i:i+slice_size]==x[:,None,None])).sum(2) torch.add(cm, cm_slice, out=cm) return to_np(cm)
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Confusion matrix as an `np.ndarray`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L149-L159
train
fastai/fastai
fastai/train.py
ClassificationInterpretation.plot_confusion_matrix
def plot_confusion_matrix(self, normalize:bool=False, title:str='Confusion matrix', cmap:Any="Blues", slice_size:int=1, norm_dec:int=2, plot_txt:bool=True, return_fig:bool=None, **kwargs)->Optional[plt.Figure]: "Plot the confusion matrix, with `title` and using `cmap`." # This function is mainly copied from the sklearn docs cm = self.confusion_matrix(slice_size=slice_size) if normalize: cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis] fig = plt.figure(**kwargs) plt.imshow(cm, interpolation='nearest', cmap=cmap) plt.title(title) tick_marks = np.arange(self.data.c) plt.xticks(tick_marks, self.data.y.classes, rotation=90) plt.yticks(tick_marks, self.data.y.classes, rotation=0) if plot_txt: thresh = cm.max() / 2. for i, j in itertools.product(range(cm.shape[0]), range(cm.shape[1])): coeff = f'{cm[i, j]:.{norm_dec}f}' if normalize else f'{cm[i, j]}' plt.text(j, i, coeff, horizontalalignment="center", verticalalignment="center", color="white" if cm[i, j] > thresh else "black") plt.tight_layout() plt.ylabel('Actual') plt.xlabel('Predicted') plt.grid(False) if ifnone(return_fig, defaults.return_fig): return fig
python
def plot_confusion_matrix(self, normalize:bool=False, title:str='Confusion matrix', cmap:Any="Blues", slice_size:int=1, norm_dec:int=2, plot_txt:bool=True, return_fig:bool=None, **kwargs)->Optional[plt.Figure]: "Plot the confusion matrix, with `title` and using `cmap`." # This function is mainly copied from the sklearn docs cm = self.confusion_matrix(slice_size=slice_size) if normalize: cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis] fig = plt.figure(**kwargs) plt.imshow(cm, interpolation='nearest', cmap=cmap) plt.title(title) tick_marks = np.arange(self.data.c) plt.xticks(tick_marks, self.data.y.classes, rotation=90) plt.yticks(tick_marks, self.data.y.classes, rotation=0) if plot_txt: thresh = cm.max() / 2. for i, j in itertools.product(range(cm.shape[0]), range(cm.shape[1])): coeff = f'{cm[i, j]:.{norm_dec}f}' if normalize else f'{cm[i, j]}' plt.text(j, i, coeff, horizontalalignment="center", verticalalignment="center", color="white" if cm[i, j] > thresh else "black") plt.tight_layout() plt.ylabel('Actual') plt.xlabel('Predicted') plt.grid(False) if ifnone(return_fig, defaults.return_fig): return fig
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L161-L184
train
fastai/fastai
fastai/train.py
ClassificationInterpretation.most_confused
def most_confused(self, min_val:int=1, slice_size:int=1)->Collection[Tuple[str,str,int]]: "Sorted descending list of largest non-diagonal entries of confusion matrix, presented as actual, predicted, number of occurrences." cm = self.confusion_matrix(slice_size=slice_size) np.fill_diagonal(cm, 0) res = [(self.data.classes[i],self.data.classes[j],cm[i,j]) for i,j in zip(*np.where(cm>=min_val))] return sorted(res, key=itemgetter(2), reverse=True)
python
def most_confused(self, min_val:int=1, slice_size:int=1)->Collection[Tuple[str,str,int]]: "Sorted descending list of largest non-diagonal entries of confusion matrix, presented as actual, predicted, number of occurrences." cm = self.confusion_matrix(slice_size=slice_size) np.fill_diagonal(cm, 0) res = [(self.data.classes[i],self.data.classes[j],cm[i,j]) for i,j in zip(*np.where(cm>=min_val))] return sorted(res, key=itemgetter(2), reverse=True)
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Sorted descending list of largest non-diagonal entries of confusion matrix, presented as actual, predicted, number of occurrences.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L186-L192
train
fastai/fastai
fastai/train.py
ClassificationInterpretation.top_losses
def top_losses(self, k:int=None, largest=True): "`k` largest(/smallest) losses and indexes, defaulting to all losses (sorted by `largest`)." return self.losses.topk(ifnone(k, len(self.losses)), largest=largest)
python
def top_losses(self, k:int=None, largest=True): "`k` largest(/smallest) losses and indexes, defaulting to all losses (sorted by `largest`)." return self.losses.topk(ifnone(k, len(self.losses)), largest=largest)
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`k` largest(/smallest) losses and indexes, defaulting to all losses (sorted by `largest`).
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/train.py#L194-L196
train
fastai/fastai
old/fastai/metrics.py
fbeta
def fbeta(log_preds, targs, beta, thresh=0.5, epsilon=1e-8): """Calculates the F-beta score (the weighted harmonic mean of precision and recall). This is the micro averaged version where the true positives, false negatives and false positives are calculated globally (as opposed to on a per label basis). beta == 1 places equal weight on precision and recall, b < 1 emphasizes precision and beta > 1 favors recall. """ assert beta > 0, 'beta needs to be greater than 0' beta2 = beta ** 2 rec = recall(log_preds, targs, thresh) prec = precision(log_preds, targs, thresh) return (1 + beta2) * prec * rec / (beta2 * prec + rec + epsilon)
python
def fbeta(log_preds, targs, beta, thresh=0.5, epsilon=1e-8): """Calculates the F-beta score (the weighted harmonic mean of precision and recall). This is the micro averaged version where the true positives, false negatives and false positives are calculated globally (as opposed to on a per label basis). beta == 1 places equal weight on precision and recall, b < 1 emphasizes precision and beta > 1 favors recall. """ assert beta > 0, 'beta needs to be greater than 0' beta2 = beta ** 2 rec = recall(log_preds, targs, thresh) prec = precision(log_preds, targs, thresh) return (1 + beta2) * prec * rec / (beta2 * prec + rec + epsilon)
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Calculates the F-beta score (the weighted harmonic mean of precision and recall). This is the micro averaged version where the true positives, false negatives and false positives are calculated globally (as opposed to on a per label basis). beta == 1 places equal weight on precision and recall, b < 1 emphasizes precision and beta > 1 favors recall.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/metrics.py#L48-L60
train
fastai/fastai
old/fastai/metrics.py
fbeta_np
def fbeta_np(preds, targs, beta, thresh=0.5, epsilon=1e-8): """ see fbeta """ assert beta > 0, 'beta needs to be greater than 0' beta2 = beta ** 2 rec = recall_np(preds, targs, thresh) prec = precision_np(preds, targs, thresh) return (1 + beta2) * prec * rec / (beta2 * prec + rec + epsilon)
python
def fbeta_np(preds, targs, beta, thresh=0.5, epsilon=1e-8): """ see fbeta """ assert beta > 0, 'beta needs to be greater than 0' beta2 = beta ** 2 rec = recall_np(preds, targs, thresh) prec = precision_np(preds, targs, thresh) return (1 + beta2) * prec * rec / (beta2 * prec + rec + epsilon)
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see fbeta
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/metrics.py#L62-L68
train
fastai/fastai
examples/train_imagenet.py
main
def main( gpu:Param("GPU to run on", str)=None ): """Distributed training of Imagenet. Fastest speed is if you run with: python -m fastai.launch""" path = Path('/mnt/fe2_disk/') tot_epochs,size,bs,lr = 60,224,256,3e-1 dirname = 'imagenet' gpu = setup_distrib(gpu) if gpu is None: bs *= torch.cuda.device_count() n_gpus = num_distrib() or 1 workers = min(12, num_cpus()//n_gpus) data = get_data(path/dirname, size, bs, workers) b_its = len(data.train_dl)//n_gpus # Using bs 256 on single GPU as baseline, scale the LR linearly tot_bs = bs*n_gpus bs_rat = tot_bs/256 lr *= bs_rat ph1 = (TrainingPhase(tot_epochs*0.10*b_its) .schedule_hp('lr', (lr/10,lr), anneal=annealing_cos)) ph2 = (TrainingPhase(tot_epochs*0.90*b_its) .schedule_hp('lr', (lr,lr/1e5), anneal=annealing_cos)) opt_func = partial(optim.Adam, eps=0.1, betas=(0.9,0.99)) learn = Learner(data, models.xresnet50(), metrics=[accuracy,top_k_accuracy], wd=1e-3, opt_func=opt_func, bn_wd=False, true_wd=True, loss_func = LabelSmoothingCrossEntropy()).mixup(alpha=0.2) learn.callback_fns += [ partial(GeneralScheduler, phases=(ph1,ph2)), partial(SaveModelCallback, every='epoch', name='model') ] learn.split(lambda m: (children(m)[-2],)) if gpu is None: learn.model = nn.DataParallel(learn.model) else: learn.to_distributed(gpu) learn.to_fp16(dynamic=True) learn.fit(tot_epochs, 1) if rank_distrib(): time.sleep(1) learn.save('done')
python
def main( gpu:Param("GPU to run on", str)=None ): """Distributed training of Imagenet. Fastest speed is if you run with: python -m fastai.launch""" path = Path('/mnt/fe2_disk/') tot_epochs,size,bs,lr = 60,224,256,3e-1 dirname = 'imagenet' gpu = setup_distrib(gpu) if gpu is None: bs *= torch.cuda.device_count() n_gpus = num_distrib() or 1 workers = min(12, num_cpus()//n_gpus) data = get_data(path/dirname, size, bs, workers) b_its = len(data.train_dl)//n_gpus # Using bs 256 on single GPU as baseline, scale the LR linearly tot_bs = bs*n_gpus bs_rat = tot_bs/256 lr *= bs_rat ph1 = (TrainingPhase(tot_epochs*0.10*b_its) .schedule_hp('lr', (lr/10,lr), anneal=annealing_cos)) ph2 = (TrainingPhase(tot_epochs*0.90*b_its) .schedule_hp('lr', (lr,lr/1e5), anneal=annealing_cos)) opt_func = partial(optim.Adam, eps=0.1, betas=(0.9,0.99)) learn = Learner(data, models.xresnet50(), metrics=[accuracy,top_k_accuracy], wd=1e-3, opt_func=opt_func, bn_wd=False, true_wd=True, loss_func = LabelSmoothingCrossEntropy()).mixup(alpha=0.2) learn.callback_fns += [ partial(GeneralScheduler, phases=(ph1,ph2)), partial(SaveModelCallback, every='epoch', name='model') ] learn.split(lambda m: (children(m)[-2],)) if gpu is None: learn.model = nn.DataParallel(learn.model) else: learn.to_distributed(gpu) learn.to_fp16(dynamic=True) learn.fit(tot_epochs, 1) if rank_distrib(): time.sleep(1) learn.save('done')
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Distributed training of Imagenet. Fastest speed is if you run with: python -m fastai.launch
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/examples/train_imagenet.py#L22-L60
train
fastai/fastai
fastai/vision/learner.py
cnn_config
def cnn_config(arch): "Get the metadata associated with `arch`." torch.backends.cudnn.benchmark = True return model_meta.get(arch, _default_meta)
python
def cnn_config(arch): "Get the metadata associated with `arch`." torch.backends.cudnn.benchmark = True return model_meta.get(arch, _default_meta)
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Get the metadata associated with `arch`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L43-L46
train
fastai/fastai
fastai/vision/learner.py
create_body
def create_body(arch:Callable, pretrained:bool=True, cut:Optional[Union[int, Callable]]=None): "Cut off the body of a typically pretrained `model` at `cut` (int) or cut the model as specified by `cut(model)` (function)." model = arch(pretrained) cut = ifnone(cut, cnn_config(arch)['cut']) if cut is None: ll = list(enumerate(model.children())) cut = next(i for i,o in reversed(ll) if has_pool_type(o)) if isinstance(cut, int): return nn.Sequential(*list(model.children())[:cut]) elif isinstance(cut, Callable): return cut(model) else: raise NamedError("cut must be either integer or a function")
python
def create_body(arch:Callable, pretrained:bool=True, cut:Optional[Union[int, Callable]]=None): "Cut off the body of a typically pretrained `model` at `cut` (int) or cut the model as specified by `cut(model)` (function)." model = arch(pretrained) cut = ifnone(cut, cnn_config(arch)['cut']) if cut is None: ll = list(enumerate(model.children())) cut = next(i for i,o in reversed(ll) if has_pool_type(o)) if isinstance(cut, int): return nn.Sequential(*list(model.children())[:cut]) elif isinstance(cut, Callable): return cut(model) else: raise NamedError("cut must be either integer or a function")
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Cut off the body of a typically pretrained `model` at `cut` (int) or cut the model as specified by `cut(model)` (function).
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L53-L62
train
fastai/fastai
fastai/vision/learner.py
create_head
def create_head(nf:int, nc:int, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, concat_pool:bool=True, bn_final:bool=False): "Model head that takes `nf` features, runs through `lin_ftrs`, and about `nc` classes." lin_ftrs = [nf, 512, nc] if lin_ftrs is None else [nf] + lin_ftrs + [nc] ps = listify(ps) if len(ps) == 1: ps = [ps[0]/2] * (len(lin_ftrs)-2) + ps actns = [nn.ReLU(inplace=True)] * (len(lin_ftrs)-2) + [None] pool = AdaptiveConcatPool2d() if concat_pool else nn.AdaptiveAvgPool2d(1) layers = [pool, Flatten()] for ni,no,p,actn in zip(lin_ftrs[:-1], lin_ftrs[1:], ps, actns): layers += bn_drop_lin(ni, no, True, p, actn) if bn_final: layers.append(nn.BatchNorm1d(lin_ftrs[-1], momentum=0.01)) return nn.Sequential(*layers)
python
def create_head(nf:int, nc:int, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, concat_pool:bool=True, bn_final:bool=False): "Model head that takes `nf` features, runs through `lin_ftrs`, and about `nc` classes." lin_ftrs = [nf, 512, nc] if lin_ftrs is None else [nf] + lin_ftrs + [nc] ps = listify(ps) if len(ps) == 1: ps = [ps[0]/2] * (len(lin_ftrs)-2) + ps actns = [nn.ReLU(inplace=True)] * (len(lin_ftrs)-2) + [None] pool = AdaptiveConcatPool2d() if concat_pool else nn.AdaptiveAvgPool2d(1) layers = [pool, Flatten()] for ni,no,p,actn in zip(lin_ftrs[:-1], lin_ftrs[1:], ps, actns): layers += bn_drop_lin(ni, no, True, p, actn) if bn_final: layers.append(nn.BatchNorm1d(lin_ftrs[-1], momentum=0.01)) return nn.Sequential(*layers)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L65-L77
train
fastai/fastai
fastai/vision/learner.py
create_cnn_model
def create_cnn_model(base_arch:Callable, nc:int, cut:Union[int,Callable]=None, pretrained:bool=True, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, custom_head:Optional[nn.Module]=None, split_on:Optional[SplitFuncOrIdxList]=None, bn_final:bool=False, concat_pool:bool=True): "Create custom convnet architecture" body = create_body(base_arch, pretrained, cut) if custom_head is None: nf = num_features_model(nn.Sequential(*body.children())) * (2 if concat_pool else 1) head = create_head(nf, nc, lin_ftrs, ps=ps, concat_pool=concat_pool, bn_final=bn_final) else: head = custom_head return nn.Sequential(body, head)
python
def create_cnn_model(base_arch:Callable, nc:int, cut:Union[int,Callable]=None, pretrained:bool=True, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, custom_head:Optional[nn.Module]=None, split_on:Optional[SplitFuncOrIdxList]=None, bn_final:bool=False, concat_pool:bool=True): "Create custom convnet architecture" body = create_body(base_arch, pretrained, cut) if custom_head is None: nf = num_features_model(nn.Sequential(*body.children())) * (2 if concat_pool else 1) head = create_head(nf, nc, lin_ftrs, ps=ps, concat_pool=concat_pool, bn_final=bn_final) else: head = custom_head return nn.Sequential(body, head)
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Create custom convnet architecture
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L79-L88
train
fastai/fastai
fastai/vision/learner.py
cnn_learner
def cnn_learner(data:DataBunch, base_arch:Callable, cut:Union[int,Callable]=None, pretrained:bool=True, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, custom_head:Optional[nn.Module]=None, split_on:Optional[SplitFuncOrIdxList]=None, bn_final:bool=False, init=nn.init.kaiming_normal_, concat_pool:bool=True, **kwargs:Any)->Learner: "Build convnet style learner." meta = cnn_config(base_arch) model = create_cnn_model(base_arch, data.c, cut, pretrained, lin_ftrs, ps=ps, custom_head=custom_head, split_on=split_on, bn_final=bn_final, concat_pool=concat_pool) learn = Learner(data, model, **kwargs) learn.split(split_on or meta['split']) if pretrained: learn.freeze() if init: apply_init(model[1], init) return learn
python
def cnn_learner(data:DataBunch, base_arch:Callable, cut:Union[int,Callable]=None, pretrained:bool=True, lin_ftrs:Optional[Collection[int]]=None, ps:Floats=0.5, custom_head:Optional[nn.Module]=None, split_on:Optional[SplitFuncOrIdxList]=None, bn_final:bool=False, init=nn.init.kaiming_normal_, concat_pool:bool=True, **kwargs:Any)->Learner: "Build convnet style learner." meta = cnn_config(base_arch) model = create_cnn_model(base_arch, data.c, cut, pretrained, lin_ftrs, ps=ps, custom_head=custom_head, split_on=split_on, bn_final=bn_final, concat_pool=concat_pool) learn = Learner(data, model, **kwargs) learn.split(split_on or meta['split']) if pretrained: learn.freeze() if init: apply_init(model[1], init) return learn
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Build convnet style learner.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L90-L102
train
fastai/fastai
fastai/vision/learner.py
unet_learner
def unet_learner(data:DataBunch, arch:Callable, pretrained:bool=True, blur_final:bool=True, norm_type:Optional[NormType]=NormType, split_on:Optional[SplitFuncOrIdxList]=None, blur:bool=False, self_attention:bool=False, y_range:Optional[Tuple[float,float]]=None, last_cross:bool=True, bottle:bool=False, cut:Union[int,Callable]=None, **learn_kwargs:Any)->Learner: "Build Unet learner from `data` and `arch`." meta = cnn_config(arch) body = create_body(arch, pretrained, cut) model = to_device(models.unet.DynamicUnet(body, n_classes=data.c, blur=blur, blur_final=blur_final, self_attention=self_attention, y_range=y_range, norm_type=norm_type, last_cross=last_cross, bottle=bottle), data.device) learn = Learner(data, model, **learn_kwargs) learn.split(ifnone(split_on, meta['split'])) if pretrained: learn.freeze() apply_init(model[2], nn.init.kaiming_normal_) return learn
python
def unet_learner(data:DataBunch, arch:Callable, pretrained:bool=True, blur_final:bool=True, norm_type:Optional[NormType]=NormType, split_on:Optional[SplitFuncOrIdxList]=None, blur:bool=False, self_attention:bool=False, y_range:Optional[Tuple[float,float]]=None, last_cross:bool=True, bottle:bool=False, cut:Union[int,Callable]=None, **learn_kwargs:Any)->Learner: "Build Unet learner from `data` and `arch`." meta = cnn_config(arch) body = create_body(arch, pretrained, cut) model = to_device(models.unet.DynamicUnet(body, n_classes=data.c, blur=blur, blur_final=blur_final, self_attention=self_attention, y_range=y_range, norm_type=norm_type, last_cross=last_cross, bottle=bottle), data.device) learn = Learner(data, model, **learn_kwargs) learn.split(ifnone(split_on, meta['split'])) if pretrained: learn.freeze() apply_init(model[2], nn.init.kaiming_normal_) return learn
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Build Unet learner from `data` and `arch`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L108-L122
train
fastai/fastai
fastai/vision/learner.py
_cl_int_from_learner
def _cl_int_from_learner(cls, learn:Learner, ds_type:DatasetType=DatasetType.Valid, tta=False): "Create an instance of `ClassificationInterpretation`. `tta` indicates if we want to use Test Time Augmentation." preds = learn.TTA(ds_type=ds_type, with_loss=True) if tta else learn.get_preds(ds_type=ds_type, with_loss=True) return cls(learn, *preds, ds_type=ds_type)
python
def _cl_int_from_learner(cls, learn:Learner, ds_type:DatasetType=DatasetType.Valid, tta=False): "Create an instance of `ClassificationInterpretation`. `tta` indicates if we want to use Test Time Augmentation." preds = learn.TTA(ds_type=ds_type, with_loss=True) if tta else learn.get_preds(ds_type=ds_type, with_loss=True) return cls(learn, *preds, ds_type=ds_type)
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Create an instance of `ClassificationInterpretation`. `tta` indicates if we want to use Test Time Augmentation.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L125-L128
train
fastai/fastai
fastai/vision/learner.py
_cl_int_plot_top_losses
def _cl_int_plot_top_losses(self, k, largest=True, figsize=(12,12), heatmap:bool=True, heatmap_thresh:int=16, return_fig:bool=None)->Optional[plt.Figure]: "Show images in `top_losses` along with their prediction, actual, loss, and probability of actual class." tl_val,tl_idx = self.top_losses(k, largest) classes = self.data.classes cols = math.ceil(math.sqrt(k)) rows = math.ceil(k/cols) fig,axes = plt.subplots(rows, cols, figsize=figsize) fig.suptitle('prediction/actual/loss/probability', weight='bold', size=14) for i,idx in enumerate(tl_idx): im,cl = self.data.dl(self.ds_type).dataset[idx] cl = int(cl) im.show(ax=axes.flat[i], title= f'{classes[self.pred_class[idx]]}/{classes[cl]} / {self.losses[idx]:.2f} / {self.probs[idx][cl]:.2f}') if heatmap: xb,_ = self.data.one_item(im, detach=False, denorm=False) m = self.learn.model.eval() with hook_output(m[0]) as hook_a: with hook_output(m[0], grad= True) as hook_g: preds = m(xb) preds[0,cl].backward() acts = hook_a.stored[0].cpu() if (acts.shape[-1]*acts.shape[-2]) >= heatmap_thresh: grad = hook_g.stored[0][0].cpu() grad_chan = grad.mean(1).mean(1) mult = F.relu(((acts*grad_chan[...,None,None])).sum(0)) sz = list(im.shape[-2:]) axes.flat[i].imshow(mult, alpha=0.6, extent=(0,*sz[::-1],0), interpolation='bilinear', cmap='magma') if ifnone(return_fig, defaults.return_fig): return fig
python
def _cl_int_plot_top_losses(self, k, largest=True, figsize=(12,12), heatmap:bool=True, heatmap_thresh:int=16, return_fig:bool=None)->Optional[plt.Figure]: "Show images in `top_losses` along with their prediction, actual, loss, and probability of actual class." tl_val,tl_idx = self.top_losses(k, largest) classes = self.data.classes cols = math.ceil(math.sqrt(k)) rows = math.ceil(k/cols) fig,axes = plt.subplots(rows, cols, figsize=figsize) fig.suptitle('prediction/actual/loss/probability', weight='bold', size=14) for i,idx in enumerate(tl_idx): im,cl = self.data.dl(self.ds_type).dataset[idx] cl = int(cl) im.show(ax=axes.flat[i], title= f'{classes[self.pred_class[idx]]}/{classes[cl]} / {self.losses[idx]:.2f} / {self.probs[idx][cl]:.2f}') if heatmap: xb,_ = self.data.one_item(im, detach=False, denorm=False) m = self.learn.model.eval() with hook_output(m[0]) as hook_a: with hook_output(m[0], grad= True) as hook_g: preds = m(xb) preds[0,cl].backward() acts = hook_a.stored[0].cpu() if (acts.shape[-1]*acts.shape[-2]) >= heatmap_thresh: grad = hook_g.stored[0][0].cpu() grad_chan = grad.mean(1).mean(1) mult = F.relu(((acts*grad_chan[...,None,None])).sum(0)) sz = list(im.shape[-2:]) axes.flat[i].imshow(mult, alpha=0.6, extent=(0,*sz[::-1],0), interpolation='bilinear', cmap='magma') if ifnone(return_fig, defaults.return_fig): return fig
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Show images in `top_losses` along with their prediction, actual, loss, and probability of actual class.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L130-L158
train
fastai/fastai
fastai/vision/learner.py
_cl_int_plot_multi_top_losses
def _cl_int_plot_multi_top_losses(self, samples:int=3, figsize:Tuple[int,int]=(8,8), save_misclassified:bool=False): "Show images in `top_losses` along with their prediction, actual, loss, and probability of predicted class in a multilabeled dataset." if samples >20: print("Max 20 samples") return losses, idxs = self.top_losses(self.data.c) l_dim = len(losses.size()) if l_dim == 1: losses, idxs = self.top_losses() infolist, ordlosses_idxs, mismatches_idxs, mismatches, losses_mismatches, mismatchescontainer = [],[],[],[],[],[] truthlabels = np.asarray(self.y_true, dtype=int) classes_ids = [k for k in enumerate(self.data.classes)] predclass = np.asarray(self.pred_class) for i,pred in enumerate(predclass): where_truth = np.nonzero((truthlabels[i]>0))[0] mismatch = np.all(pred!=where_truth) if mismatch: mismatches_idxs.append(i) if l_dim > 1 : losses_mismatches.append((losses[i][pred], i)) else: losses_mismatches.append((losses[i], i)) if l_dim > 1: infotup = (i, pred, where_truth, losses[i][pred], np.round(self.probs[i], decimals=3)[pred], mismatch) else: infotup = (i, pred, where_truth, losses[i], np.round(self.probs[i], decimals=3)[pred], mismatch) infolist.append(infotup) ds = self.data.dl(self.ds_type).dataset mismatches = ds[mismatches_idxs] ordlosses = sorted(losses_mismatches, key = lambda x: x[0], reverse=True) for w in ordlosses: ordlosses_idxs.append(w[1]) mismatches_ordered_byloss = ds[ordlosses_idxs] print(f'{str(len(mismatches))} misclassified samples over {str(len(self.data.valid_ds))} samples in the validation set.') samples = min(samples, len(mismatches)) for ima in range(len(mismatches_ordered_byloss)): mismatchescontainer.append(mismatches_ordered_byloss[ima][0]) for sampleN in range(samples): actualclasses = '' for clas in infolist[ordlosses_idxs[sampleN]][2]: actualclasses = f'{actualclasses} -- {str(classes_ids[clas][1])}' imag = mismatches_ordered_byloss[sampleN][0] imag = show_image(imag, figsize=figsize) imag.set_title(f"""Predicted: {classes_ids[infolist[ordlosses_idxs[sampleN]][1]][1]} \nActual: {actualclasses}\nLoss: {infolist[ordlosses_idxs[sampleN]][3]}\nProbability: {infolist[ordlosses_idxs[sampleN]][4]}""", loc='left') plt.show() if save_misclassified: return mismatchescontainer
python
def _cl_int_plot_multi_top_losses(self, samples:int=3, figsize:Tuple[int,int]=(8,8), save_misclassified:bool=False): "Show images in `top_losses` along with their prediction, actual, loss, and probability of predicted class in a multilabeled dataset." if samples >20: print("Max 20 samples") return losses, idxs = self.top_losses(self.data.c) l_dim = len(losses.size()) if l_dim == 1: losses, idxs = self.top_losses() infolist, ordlosses_idxs, mismatches_idxs, mismatches, losses_mismatches, mismatchescontainer = [],[],[],[],[],[] truthlabels = np.asarray(self.y_true, dtype=int) classes_ids = [k for k in enumerate(self.data.classes)] predclass = np.asarray(self.pred_class) for i,pred in enumerate(predclass): where_truth = np.nonzero((truthlabels[i]>0))[0] mismatch = np.all(pred!=where_truth) if mismatch: mismatches_idxs.append(i) if l_dim > 1 : losses_mismatches.append((losses[i][pred], i)) else: losses_mismatches.append((losses[i], i)) if l_dim > 1: infotup = (i, pred, where_truth, losses[i][pred], np.round(self.probs[i], decimals=3)[pred], mismatch) else: infotup = (i, pred, where_truth, losses[i], np.round(self.probs[i], decimals=3)[pred], mismatch) infolist.append(infotup) ds = self.data.dl(self.ds_type).dataset mismatches = ds[mismatches_idxs] ordlosses = sorted(losses_mismatches, key = lambda x: x[0], reverse=True) for w in ordlosses: ordlosses_idxs.append(w[1]) mismatches_ordered_byloss = ds[ordlosses_idxs] print(f'{str(len(mismatches))} misclassified samples over {str(len(self.data.valid_ds))} samples in the validation set.') samples = min(samples, len(mismatches)) for ima in range(len(mismatches_ordered_byloss)): mismatchescontainer.append(mismatches_ordered_byloss[ima][0]) for sampleN in range(samples): actualclasses = '' for clas in infolist[ordlosses_idxs[sampleN]][2]: actualclasses = f'{actualclasses} -- {str(classes_ids[clas][1])}' imag = mismatches_ordered_byloss[sampleN][0] imag = show_image(imag, figsize=figsize) imag.set_title(f"""Predicted: {classes_ids[infolist[ordlosses_idxs[sampleN]][1]][1]} \nActual: {actualclasses}\nLoss: {infolist[ordlosses_idxs[sampleN]][3]}\nProbability: {infolist[ordlosses_idxs[sampleN]][4]}""", loc='left') plt.show() if save_misclassified: return mismatchescontainer
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Show images in `top_losses` along with their prediction, actual, loss, and probability of predicted class in a multilabeled dataset.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/vision/learner.py#L160-L200
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.from_toplosses
def from_toplosses(cls, learn, n_imgs=None, **kwargs): "Gets indices with top losses." train_ds, train_idxs = cls.get_toplosses_idxs(learn, n_imgs, **kwargs) return train_ds, train_idxs
python
def from_toplosses(cls, learn, n_imgs=None, **kwargs): "Gets indices with top losses." train_ds, train_idxs = cls.get_toplosses_idxs(learn, n_imgs, **kwargs) return train_ds, train_idxs
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Gets indices with top losses.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L17-L20
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.get_toplosses_idxs
def get_toplosses_idxs(cls, learn, n_imgs, **kwargs): "Sorts `ds_type` dataset by top losses and returns dataset and sorted indices." dl = learn.data.fix_dl if not n_imgs: n_imgs = len(dl.dataset) _,_,top_losses = learn.get_preds(ds_type=DatasetType.Fix, with_loss=True) idxs = torch.topk(top_losses, n_imgs)[1] return cls.padded_ds(dl.dataset, **kwargs), idxs
python
def get_toplosses_idxs(cls, learn, n_imgs, **kwargs): "Sorts `ds_type` dataset by top losses and returns dataset and sorted indices." dl = learn.data.fix_dl if not n_imgs: n_imgs = len(dl.dataset) _,_,top_losses = learn.get_preds(ds_type=DatasetType.Fix, with_loss=True) idxs = torch.topk(top_losses, n_imgs)[1] return cls.padded_ds(dl.dataset, **kwargs), idxs
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Sorts `ds_type` dataset by top losses and returns dataset and sorted indices.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L23-L29
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.padded_ds
def padded_ds(ll_input, size=(250, 300), resize_method=ResizeMethod.CROP, padding_mode='zeros', **kwargs): "For a LabelList `ll_input`, resize each image to `size` using `resize_method` and `padding_mode`." return ll_input.transform(tfms=crop_pad(), size=size, resize_method=resize_method, padding_mode=padding_mode)
python
def padded_ds(ll_input, size=(250, 300), resize_method=ResizeMethod.CROP, padding_mode='zeros', **kwargs): "For a LabelList `ll_input`, resize each image to `size` using `resize_method` and `padding_mode`." return ll_input.transform(tfms=crop_pad(), size=size, resize_method=resize_method, padding_mode=padding_mode)
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For a LabelList `ll_input`, resize each image to `size` using `resize_method` and `padding_mode`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L31-L33
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.from_similars
def from_similars(cls, learn, layer_ls:list=[0, 7, 2], **kwargs): "Gets the indices for the most similar images." train_ds, train_idxs = cls.get_similars_idxs(learn, layer_ls, **kwargs) return train_ds, train_idxs
python
def from_similars(cls, learn, layer_ls:list=[0, 7, 2], **kwargs): "Gets the indices for the most similar images." train_ds, train_idxs = cls.get_similars_idxs(learn, layer_ls, **kwargs) return train_ds, train_idxs
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L36-L39
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.get_similars_idxs
def get_similars_idxs(cls, learn, layer_ls, **kwargs): "Gets the indices for the most similar images in `ds_type` dataset" hook = hook_output(learn.model[layer_ls[0]][layer_ls[1]][layer_ls[2]]) dl = learn.data.fix_dl ds_actns = cls.get_actns(learn, hook=hook, dl=dl, **kwargs) similarities = cls.comb_similarity(ds_actns, ds_actns, **kwargs) idxs = cls.sort_idxs(similarities) return cls.padded_ds(dl, **kwargs), idxs
python
def get_similars_idxs(cls, learn, layer_ls, **kwargs): "Gets the indices for the most similar images in `ds_type` dataset" hook = hook_output(learn.model[layer_ls[0]][layer_ls[1]][layer_ls[2]]) dl = learn.data.fix_dl ds_actns = cls.get_actns(learn, hook=hook, dl=dl, **kwargs) similarities = cls.comb_similarity(ds_actns, ds_actns, **kwargs) idxs = cls.sort_idxs(similarities) return cls.padded_ds(dl, **kwargs), idxs
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L42-L50
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.get_actns
def get_actns(learn, hook:Hook, dl:DataLoader, pool=AdaptiveConcatPool2d, pool_dim:int=4, **kwargs): "Gets activations at the layer specified by `hook`, applies `pool` of dim `pool_dim` and concatenates" print('Getting activations...') actns = [] learn.model.eval() with torch.no_grad(): for (xb,yb) in progress_bar(dl): learn.model(xb) actns.append((hook.stored).cpu()) if pool: pool = pool(pool_dim) return pool(torch.cat(actns)).view(len(dl.x),-1) else: return torch.cat(actns).view(len(dl.x),-1)
python
def get_actns(learn, hook:Hook, dl:DataLoader, pool=AdaptiveConcatPool2d, pool_dim:int=4, **kwargs): "Gets activations at the layer specified by `hook`, applies `pool` of dim `pool_dim` and concatenates" print('Getting activations...') actns = [] learn.model.eval() with torch.no_grad(): for (xb,yb) in progress_bar(dl): learn.model(xb) actns.append((hook.stored).cpu()) if pool: pool = pool(pool_dim) return pool(torch.cat(actns)).view(len(dl.x),-1) else: return torch.cat(actns).view(len(dl.x),-1)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L53-L67
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.comb_similarity
def comb_similarity(t1: torch.Tensor, t2: torch.Tensor, **kwargs): # https://github.com/pytorch/pytorch/issues/11202 "Computes the similarity function between each embedding of `t1` and `t2` matrices." print('Computing similarities...') w1 = t1.norm(p=2, dim=1, keepdim=True) w2 = w1 if t2 is t1 else t2.norm(p=2, dim=1, keepdim=True) t = torch.mm(t1, t2.t()) / (w1 * w2.t()).clamp(min=1e-8) return torch.tril(t, diagonal=-1)
python
def comb_similarity(t1: torch.Tensor, t2: torch.Tensor, **kwargs): # https://github.com/pytorch/pytorch/issues/11202 "Computes the similarity function between each embedding of `t1` and `t2` matrices." print('Computing similarities...') w1 = t1.norm(p=2, dim=1, keepdim=True) w2 = w1 if t2 is t1 else t2.norm(p=2, dim=1, keepdim=True) t = torch.mm(t1, t2.t()) / (w1 * w2.t()).clamp(min=1e-8) return torch.tril(t, diagonal=-1)
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Computes the similarity function between each embedding of `t1` and `t2` matrices.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L71-L80
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.largest_indices
def largest_indices(arr, n): "Returns the `n` largest indices from a numpy array `arr`." #https://stackoverflow.com/questions/6910641/how-do-i-get-indices-of-n-maximum-values-in-a-numpy-array flat = arr.flatten() indices = np.argpartition(flat, -n)[-n:] indices = indices[np.argsort(-flat[indices])] return np.unravel_index(indices, arr.shape)
python
def largest_indices(arr, n): "Returns the `n` largest indices from a numpy array `arr`." #https://stackoverflow.com/questions/6910641/how-do-i-get-indices-of-n-maximum-values-in-a-numpy-array flat = arr.flatten() indices = np.argpartition(flat, -n)[-n:] indices = indices[np.argsort(-flat[indices])] return np.unravel_index(indices, arr.shape)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L82-L88
train
fastai/fastai
fastai/widgets/image_cleaner.py
DatasetFormatter.sort_idxs
def sort_idxs(cls, similarities): "Sorts `similarities` and return the indexes in pairs ordered by highest similarity." idxs = cls.largest_indices(similarities, len(similarities)) idxs = [(idxs[0][i], idxs[1][i]) for i in range(len(idxs[0]))] return [e for l in idxs for e in l]
python
def sort_idxs(cls, similarities): "Sorts `similarities` and return the indexes in pairs ordered by highest similarity." idxs = cls.largest_indices(similarities, len(similarities)) idxs = [(idxs[0][i], idxs[1][i]) for i in range(len(idxs[0]))] return [e for l in idxs for e in l]
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L91-L95
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.make_img_widget
def make_img_widget(cls, img, layout=Layout(), format='jpg'): "Returns an image widget for specified file name `img`." return widgets.Image(value=img, format=format, layout=layout)
python
def make_img_widget(cls, img, layout=Layout(), format='jpg'): "Returns an image widget for specified file name `img`." return widgets.Image(value=img, format=format, layout=layout)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L113-L115
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.make_button_widget
def make_button_widget(cls, label, file_path=None, handler=None, style=None, layout=Layout(width='auto')): "Return a Button widget with specified `handler`." btn = widgets.Button(description=label, layout=layout) if handler is not None: btn.on_click(handler) if style is not None: btn.button_style = style btn.file_path = file_path btn.flagged_for_delete = False return btn
python
def make_button_widget(cls, label, file_path=None, handler=None, style=None, layout=Layout(width='auto')): "Return a Button widget with specified `handler`." btn = widgets.Button(description=label, layout=layout) if handler is not None: btn.on_click(handler) if style is not None: btn.button_style = style btn.file_path = file_path btn.flagged_for_delete = False return btn
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L118-L125
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.make_dropdown_widget
def make_dropdown_widget(cls, description='Description', options=['Label 1', 'Label 2'], value='Label 1', file_path=None, layout=Layout(), handler=None): "Return a Dropdown widget with specified `handler`." dd = widgets.Dropdown(description=description, options=options, value=value, layout=layout) if file_path is not None: dd.file_path = file_path if handler is not None: dd.observe(handler, names=['value']) return dd
python
def make_dropdown_widget(cls, description='Description', options=['Label 1', 'Label 2'], value='Label 1', file_path=None, layout=Layout(), handler=None): "Return a Dropdown widget with specified `handler`." dd = widgets.Dropdown(description=description, options=options, value=value, layout=layout) if file_path is not None: dd.file_path = file_path if handler is not None: dd.observe(handler, names=['value']) return dd
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L128-L134
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.make_horizontal_box
def make_horizontal_box(cls, children, layout=Layout()): "Make a horizontal box with `children` and `layout`." return widgets.HBox(children, layout=layout)
python
def make_horizontal_box(cls, children, layout=Layout()): "Make a horizontal box with `children` and `layout`." return widgets.HBox(children, layout=layout)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L137-L139
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.make_vertical_box
def make_vertical_box(cls, children, layout=Layout(), duplicates=False): "Make a vertical box with `children` and `layout`." if not duplicates: return widgets.VBox(children, layout=layout) else: return widgets.VBox([children[0], children[2]], layout=layout)
python
def make_vertical_box(cls, children, layout=Layout(), duplicates=False): "Make a vertical box with `children` and `layout`." if not duplicates: return widgets.VBox(children, layout=layout) else: return widgets.VBox([children[0], children[2]], layout=layout)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L142-L145
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.create_image_list
def create_image_list(self, dataset, fns_idxs): "Create a list of images, filenames and labels but first removing files that are not supposed to be displayed." items = dataset.x.items if self._duplicates: chunked_idxs = chunks(fns_idxs, 2) chunked_idxs = [chunk for chunk in chunked_idxs if Path(items[chunk[0]]).is_file() and Path(items[chunk[1]]).is_file()] return [(dataset.x[i]._repr_jpeg_(), items[i], self._labels[dataset.y[i].data]) for chunk in chunked_idxs for i in chunk] else: return [(dataset.x[i]._repr_jpeg_(), items[i], self._labels[dataset.y[i].data]) for i in fns_idxs if Path(items[i]).is_file()]
python
def create_image_list(self, dataset, fns_idxs): "Create a list of images, filenames and labels but first removing files that are not supposed to be displayed." items = dataset.x.items if self._duplicates: chunked_idxs = chunks(fns_idxs, 2) chunked_idxs = [chunk for chunk in chunked_idxs if Path(items[chunk[0]]).is_file() and Path(items[chunk[1]]).is_file()] return [(dataset.x[i]._repr_jpeg_(), items[i], self._labels[dataset.y[i].data]) for chunk in chunked_idxs for i in chunk] else: return [(dataset.x[i]._repr_jpeg_(), items[i], self._labels[dataset.y[i].data]) for i in fns_idxs if Path(items[i]).is_file()]
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Create a list of images, filenames and labels but first removing files that are not supposed to be displayed.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L147-L156
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.relabel
def relabel(self, change): "Relabel images by moving from parent dir with old label `class_old` to parent dir with new label `class_new`." class_new,class_old,file_path = change.new,change.old,change.owner.file_path fp = Path(file_path) parent = fp.parents[1] self._csv_dict[fp] = class_new
python
def relabel(self, change): "Relabel images by moving from parent dir with old label `class_old` to parent dir with new label `class_new`." class_new,class_old,file_path = change.new,change.old,change.owner.file_path fp = Path(file_path) parent = fp.parents[1] self._csv_dict[fp] = class_new
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Relabel images by moving from parent dir with old label `class_old` to parent dir with new label `class_new`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L158-L163
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.next_batch
def next_batch(self, _): "Handler for 'Next Batch' button click. Delete all flagged images and renders next batch." for img_widget, delete_btn, fp, in self._batch: fp = delete_btn.file_path if (delete_btn.flagged_for_delete == True): self.delete_image(fp) self._deleted_fns.append(fp) self._all_images = self._all_images[self._batch_size:] self.empty_batch() self.render()
python
def next_batch(self, _): "Handler for 'Next Batch' button click. Delete all flagged images and renders next batch." for img_widget, delete_btn, fp, in self._batch: fp = delete_btn.file_path if (delete_btn.flagged_for_delete == True): self.delete_image(fp) self._deleted_fns.append(fp) self._all_images = self._all_images[self._batch_size:] self.empty_batch() self.render()
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Handler for 'Next Batch' button click. Delete all flagged images and renders next batch.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L165-L174
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.on_delete
def on_delete(self, btn): "Flag this image as delete or keep." btn.button_style = "" if btn.flagged_for_delete else "danger" btn.flagged_for_delete = not btn.flagged_for_delete
python
def on_delete(self, btn): "Flag this image as delete or keep." btn.button_style = "" if btn.flagged_for_delete else "danger" btn.flagged_for_delete = not btn.flagged_for_delete
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Flag this image as delete or keep.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L176-L179
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.get_widgets
def get_widgets(self, duplicates): "Create and format widget set." widgets = [] for (img,fp,human_readable_label) in self._all_images[:self._batch_size]: img_widget = self.make_img_widget(img, layout=Layout(height='250px', width='300px')) dropdown = self.make_dropdown_widget(description='', options=self._labels, value=human_readable_label, file_path=fp, handler=self.relabel, layout=Layout(width='auto')) delete_btn = self.make_button_widget('Delete', file_path=fp, handler=self.on_delete) widgets.append(self.make_vertical_box([img_widget, dropdown, delete_btn], layout=Layout(width='auto', height='300px', overflow_x="hidden"), duplicates=duplicates)) self._batch.append((img_widget, delete_btn, fp)) return widgets
python
def get_widgets(self, duplicates): "Create and format widget set." widgets = [] for (img,fp,human_readable_label) in self._all_images[:self._batch_size]: img_widget = self.make_img_widget(img, layout=Layout(height='250px', width='300px')) dropdown = self.make_dropdown_widget(description='', options=self._labels, value=human_readable_label, file_path=fp, handler=self.relabel, layout=Layout(width='auto')) delete_btn = self.make_button_widget('Delete', file_path=fp, handler=self.on_delete) widgets.append(self.make_vertical_box([img_widget, dropdown, delete_btn], layout=Layout(width='auto', height='300px', overflow_x="hidden"), duplicates=duplicates)) self._batch.append((img_widget, delete_btn, fp)) return widgets
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Create and format widget set.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L189-L201
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.batch_contains_deleted
def batch_contains_deleted(self): "Check if current batch contains already deleted images." if not self._duplicates: return False imgs = [self._all_images[:self._batch_size][0][1], self._all_images[:self._batch_size][1][1]] return any(img in self._deleted_fns for img in imgs)
python
def batch_contains_deleted(self): "Check if current batch contains already deleted images." if not self._duplicates: return False imgs = [self._all_images[:self._batch_size][0][1], self._all_images[:self._batch_size][1][1]] return any(img in self._deleted_fns for img in imgs)
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Check if current batch contains already deleted images.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L203-L207
train
fastai/fastai
fastai/widgets/image_cleaner.py
ImageCleaner.render
def render(self): "Re-render Jupyter cell for batch of images." clear_output() self.write_csv() if self.empty() and self._skipped>0: return display(f'No images to show :). {self._skipped} pairs were ' f'skipped since at least one of the images was deleted by the user.') elif self.empty(): return display('No images to show :)') if self.batch_contains_deleted(): self.next_batch(None) self._skipped += 1 else: display(self.make_horizontal_box(self.get_widgets(self._duplicates))) display(self.make_button_widget('Next Batch', handler=self.next_batch, style="primary"))
python
def render(self): "Re-render Jupyter cell for batch of images." clear_output() self.write_csv() if self.empty() and self._skipped>0: return display(f'No images to show :). {self._skipped} pairs were ' f'skipped since at least one of the images was deleted by the user.') elif self.empty(): return display('No images to show :)') if self.batch_contains_deleted(): self.next_batch(None) self._skipped += 1 else: display(self.make_horizontal_box(self.get_widgets(self._duplicates))) display(self.make_button_widget('Next Batch', handler=self.next_batch, style="primary"))
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Re-render Jupyter cell for batch of images.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/widgets/image_cleaner.py#L220-L234
train
fastai/fastai
fastai/text/models/transformer.py
_line_shift
def _line_shift(x:Tensor, mask:bool=False): "Shift the line i of `x` by p-i elements to the left, is `mask` puts 0s on the diagonal." bs,nh,n,p = x.size() x_pad = torch.cat([x.new_zeros(bs,nh,n,1), x], dim=3) x_shift = x_pad.view(bs,nh,p + 1,n)[:,:,1:].view_as(x) if mask: x_shift.mul_(torch.tril(x.new_ones(n,p), p-n)[None,None,]) return x_shift
python
def _line_shift(x:Tensor, mask:bool=False): "Shift the line i of `x` by p-i elements to the left, is `mask` puts 0s on the diagonal." bs,nh,n,p = x.size() x_pad = torch.cat([x.new_zeros(bs,nh,n,1), x], dim=3) x_shift = x_pad.view(bs,nh,p + 1,n)[:,:,1:].view_as(x) if mask: x_shift.mul_(torch.tril(x.new_ones(n,p), p-n)[None,None,]) return x_shift
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Shift the line i of `x` by p-i elements to the left, is `mask` puts 0s on the diagonal.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/text/models/transformer.py#L85-L91
train
fastai/fastai
fastai/text/models/transformer.py
tfmer_lm_split
def tfmer_lm_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0] n = len(encoder.layers)//3 groups = [list(encoder.layers[:n]), list(encoder.layers[n:2*n]), list(encoder.layers[2*n:])] return groups + [[encoder.encoder, model[1]]]
python
def tfmer_lm_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0] n = len(encoder.layers)//3 groups = [list(encoder.layers[:n]), list(encoder.layers[n:2*n]), list(encoder.layers[2*n:])] return groups + [[encoder.encoder, model[1]]]
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Split a RNN `model` in groups for differential learning rates.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/text/models/transformer.py#L255-L260
train
fastai/fastai
fastai/text/models/transformer.py
tfmer_clas_split
def tfmer_clas_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0].module n = len(encoder.layers)//3 groups = [[encoder.encoder], list(encoder.layers[:n]), list(encoder.layers[n:2*n]), list(encoder.layers[2*n:])] return groups + [[model[1]]]
python
def tfmer_clas_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0].module n = len(encoder.layers)//3 groups = [[encoder.encoder], list(encoder.layers[:n]), list(encoder.layers[n:2*n]), list(encoder.layers[2*n:])] return groups + [[model[1]]]
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Split a RNN `model` in groups for differential learning rates.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/text/models/transformer.py#L262-L267
train
fastai/fastai
fastai/text/models/transformer.py
tfmerXL_lm_split
def tfmerXL_lm_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0] n = len(encoder.layers)//3 groups = [list(encoder.layers[:n]) + [ParameterModule(encoder.u), ParameterModule(encoder.v)]] return groups + [list(encoder.layers[n:2*n]), list(encoder.layers[2*n:]), [encoder.encoder, model[1]]]
python
def tfmerXL_lm_split(model:nn.Module) -> List[nn.Module]: "Split a RNN `model` in groups for differential learning rates." encoder = model[0] n = len(encoder.layers)//3 groups = [list(encoder.layers[:n]) + [ParameterModule(encoder.u), ParameterModule(encoder.v)]] return groups + [list(encoder.layers[n:2*n]), list(encoder.layers[2*n:]), [encoder.encoder, model[1]]]
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Split a RNN `model` in groups for differential learning rates.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/text/models/transformer.py#L277-L282
train
fastai/fastai
fastai/text/models/transformer.py
TransformerXL.reset
def reset(self): "Reset the internal memory." self.hidden = [next(self.parameters()).data.new(0) for i in range(self.n_layers+1)]
python
def reset(self): "Reset the internal memory." self.hidden = [next(self.parameters()).data.new(0) for i in range(self.n_layers+1)]
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Reset the internal memory.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/text/models/transformer.py#L198-L200
train
fastai/fastai
docs_src/nbval/nbdime_reporter.py
NbdimeReporter.make_report
def make_report(self, outcome): """Make report in form of two notebooks. Use nbdime diff-web to present the difference between reference cells and test cells. """ failures = self.getreports('failed') if not failures: return for rep in failures: # Check if this is a notebook node msg = self._getfailureheadline(rep) lines = rep.longrepr.splitlines() if len(lines) > 1: self.section(msg, lines[1]) self._outrep_summary(rep) tmpdir = tempfile.mkdtemp() try: ref_file = os.path.join(tmpdir, 'reference.ipynb') test_file = os.path.join(tmpdir, 'test_result.ipynb') with io.open(ref_file, "w", encoding="utf8") as f: nbformat.write(self.nb_ref, f) with io.open(test_file, "w", encoding="utf8") as f: nbformat.write(self.nb_test, f) run_server( port=0, # Run on random port cwd=tmpdir, closable=True, on_port=lambda port: browse( port, ref_file, test_file, None)) finally: shutil.rmtree(tmpdir)
python
def make_report(self, outcome): """Make report in form of two notebooks. Use nbdime diff-web to present the difference between reference cells and test cells. """ failures = self.getreports('failed') if not failures: return for rep in failures: # Check if this is a notebook node msg = self._getfailureheadline(rep) lines = rep.longrepr.splitlines() if len(lines) > 1: self.section(msg, lines[1]) self._outrep_summary(rep) tmpdir = tempfile.mkdtemp() try: ref_file = os.path.join(tmpdir, 'reference.ipynb') test_file = os.path.join(tmpdir, 'test_result.ipynb') with io.open(ref_file, "w", encoding="utf8") as f: nbformat.write(self.nb_ref, f) with io.open(test_file, "w", encoding="utf8") as f: nbformat.write(self.nb_test, f) run_server( port=0, # Run on random port cwd=tmpdir, closable=True, on_port=lambda port: browse( port, ref_file, test_file, None)) finally: shutil.rmtree(tmpdir)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/nbdime_reporter.py#L76-L107
train
fastai/fastai
old/fastai/fp16.py
batchnorm_to_fp32
def batchnorm_to_fp32(module): ''' BatchNorm layers to have parameters in single precision. Find all layers and convert them back to float. This can't be done with built in .apply as that function will apply fn to all modules, parameters, and buffers. Thus we wouldn't be able to guard the float conversion based on the module type. ''' if isinstance(module, nn.modules.batchnorm._BatchNorm): module.float() for child in module.children(): batchnorm_to_fp32(child) return module
python
def batchnorm_to_fp32(module): ''' BatchNorm layers to have parameters in single precision. Find all layers and convert them back to float. This can't be done with built in .apply as that function will apply fn to all modules, parameters, and buffers. Thus we wouldn't be able to guard the float conversion based on the module type. ''' if isinstance(module, nn.modules.batchnorm._BatchNorm): module.float() for child in module.children(): batchnorm_to_fp32(child) return module
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/fp16.py#L31-L43
train
fastai/fastai
old/fastai/fp16.py
copy_model_to_fp32
def copy_model_to_fp32(m, optim): """ Creates a fp32 copy of model parameters and sets optimizer parameters """ fp32_params = [m_param.clone().type(torch.cuda.FloatTensor).detach() for m_param in trainable_params_(m)] optim_groups = [group['params'] for group in optim.param_groups] iter_fp32_params = iter(fp32_params) for group_params in optim_groups: for i in range(len(group_params)): if not group_params[i].requires_grad: continue # only update trainable_params_ fp32_param = next(iter_fp32_params) assert(fp32_param.shape == group_params[i].shape) fp32_param.requires_grad = group_params[i].requires_grad group_params[i] = fp32_param return fp32_params
python
def copy_model_to_fp32(m, optim): """ Creates a fp32 copy of model parameters and sets optimizer parameters """ fp32_params = [m_param.clone().type(torch.cuda.FloatTensor).detach() for m_param in trainable_params_(m)] optim_groups = [group['params'] for group in optim.param_groups] iter_fp32_params = iter(fp32_params) for group_params in optim_groups: for i in range(len(group_params)): if not group_params[i].requires_grad: continue # only update trainable_params_ fp32_param = next(iter_fp32_params) assert(fp32_param.shape == group_params[i].shape) fp32_param.requires_grad = group_params[i].requires_grad group_params[i] = fp32_param return fp32_params
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/old/fastai/fp16.py#L45-L58
train
fastai/fastai
docs_src/nbval/cover.py
setup_coverage
def setup_coverage(config, kernel, floc, output_loc=None): """Start coverage reporting in kernel. Currently supported kernel languages are: - Python """ language = kernel.language if language.startswith('python'): # Get the pytest-cov coverage object cov = get_cov(config) if cov: # If present, copy the data file location used by pytest-cov data_file = os.path.abspath(cov.config.data_file) else: # Fall back on output_loc and current dir if not data_file = os.path.abspath(os.path.join(output_loc or os.getcwd(), '.coverage')) # Get options from pytest-cov's command line arguments: source = config.option.cov_source config_file = config.option.cov_config if isinstance(config_file, str) and os.path.isfile(config_file): config_file = os.path.abspath(config_file) # Copy the suffix of plugin if available suffix = _make_suffix(cov) if suffix is True: # Cannot merge data with autogen suffix, so turn off warning # for missing data in pytest-cov collector cov._warn_no_data = False # Build setup command and execute in kernel: cmd = _python_setup % (data_file, source, config_file, suffix) msg_id = kernel.kc.execute(cmd, stop_on_error=False) kernel.await_idle(msg_id, 60) # A minute should be plenty to enable coverage else: config.warn( 'C1', 'Coverage currently not supported for language "%s".' % language, floc) return
python
def setup_coverage(config, kernel, floc, output_loc=None): """Start coverage reporting in kernel. Currently supported kernel languages are: - Python """ language = kernel.language if language.startswith('python'): # Get the pytest-cov coverage object cov = get_cov(config) if cov: # If present, copy the data file location used by pytest-cov data_file = os.path.abspath(cov.config.data_file) else: # Fall back on output_loc and current dir if not data_file = os.path.abspath(os.path.join(output_loc or os.getcwd(), '.coverage')) # Get options from pytest-cov's command line arguments: source = config.option.cov_source config_file = config.option.cov_config if isinstance(config_file, str) and os.path.isfile(config_file): config_file = os.path.abspath(config_file) # Copy the suffix of plugin if available suffix = _make_suffix(cov) if suffix is True: # Cannot merge data with autogen suffix, so turn off warning # for missing data in pytest-cov collector cov._warn_no_data = False # Build setup command and execute in kernel: cmd = _python_setup % (data_file, source, config_file, suffix) msg_id = kernel.kc.execute(cmd, stop_on_error=False) kernel.await_idle(msg_id, 60) # A minute should be plenty to enable coverage else: config.warn( 'C1', 'Coverage currently not supported for language "%s".' % language, floc) return
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L33-L73
train
fastai/fastai
docs_src/nbval/cover.py
teardown_coverage
def teardown_coverage(config, kernel, output_loc=None): """Finish coverage reporting in kernel. The coverage should previously have been started with setup_coverage. """ language = kernel.language if language.startswith('python'): # Teardown code does not require any input, simply execute: msg_id = kernel.kc.execute(_python_teardown) kernel.await_idle(msg_id, 60) # A minute should be plenty to write out coverage # Ensure we merge our data into parent data of pytest-cov, if possible cov = get_cov(config) _merge_nbval_coverage_data(cov) else: # Warnings should be given on setup, or there might be no teardown # for a specific language, so do nothing here pass
python
def teardown_coverage(config, kernel, output_loc=None): """Finish coverage reporting in kernel. The coverage should previously have been started with setup_coverage. """ language = kernel.language if language.startswith('python'): # Teardown code does not require any input, simply execute: msg_id = kernel.kc.execute(_python_teardown) kernel.await_idle(msg_id, 60) # A minute should be plenty to write out coverage # Ensure we merge our data into parent data of pytest-cov, if possible cov = get_cov(config) _merge_nbval_coverage_data(cov) else: # Warnings should be given on setup, or there might be no teardown # for a specific language, so do nothing here pass
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L76-L95
train
fastai/fastai
docs_src/nbval/cover.py
get_cov
def get_cov(config): """Returns the coverage object of pytest-cov.""" # Check with hasplugin to avoid getplugin exception in older pytest. if config.pluginmanager.hasplugin('_cov'): plugin = config.pluginmanager.getplugin('_cov') if plugin.cov_controller: return plugin.cov_controller.cov return None
python
def get_cov(config): """Returns the coverage object of pytest-cov.""" # Check with hasplugin to avoid getplugin exception in older pytest. if config.pluginmanager.hasplugin('_cov'): plugin = config.pluginmanager.getplugin('_cov') if plugin.cov_controller: return plugin.cov_controller.cov return None
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Returns the coverage object of pytest-cov.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L98-L106
train
fastai/fastai
docs_src/nbval/cover.py
_make_suffix
def _make_suffix(cov): """Create a suffix for nbval data file depending on pytest-cov config.""" # Check if coverage object has data_suffix: if cov and cov.data_suffix is not None: # If True, the suffix will be autogenerated by coverage.py. # The suffixed data files will be automatically combined later. if cov.data_suffix is True: return True # Has a suffix, but we add our own extension return cov.data_suffix + '.nbval' return 'nbval'
python
def _make_suffix(cov): """Create a suffix for nbval data file depending on pytest-cov config.""" # Check if coverage object has data_suffix: if cov and cov.data_suffix is not None: # If True, the suffix will be autogenerated by coverage.py. # The suffixed data files will be automatically combined later. if cov.data_suffix is True: return True # Has a suffix, but we add our own extension return cov.data_suffix + '.nbval' return 'nbval'
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L109-L119
train
fastai/fastai
docs_src/nbval/cover.py
_merge_nbval_coverage_data
def _merge_nbval_coverage_data(cov): """Merge nbval coverage data into pytest-cov data.""" if not cov: return suffix = _make_suffix(cov) if suffix is True: # Note: If suffix is true, we are running in parallel, so several # files will be generated. This will cause some warnings about "no coverage" # but is otherwise OK. Do nothing. return # Get the filename of the nbval coverage: filename = cov.data_files.filename + '.' + suffix # Read coverage generated by nbval in this run: nbval_data = coverage.CoverageData(debug=cov.debug) try: nbval_data.read_file(os.path.abspath(filename)) except coverage.CoverageException: return # Set up aliases (following internal coverage.py code here) aliases = None if cov.config.paths: aliases = coverage.files.PathAliases() for paths in cov.config.paths.values(): result = paths[0] for pattern in paths[1:]: aliases.add(pattern, result) # Merge nbval data into pytest-cov data: cov.data.update(nbval_data, aliases=aliases) # Delete our nbval coverage data coverage.misc.file_be_gone(filename)
python
def _merge_nbval_coverage_data(cov): """Merge nbval coverage data into pytest-cov data.""" if not cov: return suffix = _make_suffix(cov) if suffix is True: # Note: If suffix is true, we are running in parallel, so several # files will be generated. This will cause some warnings about "no coverage" # but is otherwise OK. Do nothing. return # Get the filename of the nbval coverage: filename = cov.data_files.filename + '.' + suffix # Read coverage generated by nbval in this run: nbval_data = coverage.CoverageData(debug=cov.debug) try: nbval_data.read_file(os.path.abspath(filename)) except coverage.CoverageException: return # Set up aliases (following internal coverage.py code here) aliases = None if cov.config.paths: aliases = coverage.files.PathAliases() for paths in cov.config.paths.values(): result = paths[0] for pattern in paths[1:]: aliases.add(pattern, result) # Merge nbval data into pytest-cov data: cov.data.update(nbval_data, aliases=aliases) # Delete our nbval coverage data coverage.misc.file_be_gone(filename)
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/docs_src/nbval/cover.py#L122-L156
train
fastai/fastai
fastai/core.py
chunks
def chunks(l:Collection, n:int)->Iterable: "Yield successive `n`-sized chunks from `l`." for i in range(0, len(l), n): yield l[i:i+n]
python
def chunks(l:Collection, n:int)->Iterable: "Yield successive `n`-sized chunks from `l`." for i in range(0, len(l), n): yield l[i:i+n]
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Yield successive `n`-sized chunks from `l`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L57-L59
train
fastai/fastai
fastai/core.py
to_int
def to_int(b:Any)->Union[int,List[int]]: "Convert `b` to an int or list of ints (if `is_listy`); raises exception if not convertible" if is_listy(b): return [to_int(x) for x in b] else: return int(b)
python
def to_int(b:Any)->Union[int,List[int]]: "Convert `b` to an int or list of ints (if `is_listy`); raises exception if not convertible" if is_listy(b): return [to_int(x) for x in b] else: return int(b)
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Convert `b` to an int or list of ints (if `is_listy`); raises exception if not convertible
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L61-L64
train
fastai/fastai
fastai/core.py
is1d
def is1d(a:Collection)->bool: "Return `True` if `a` is one-dimensional" return len(a.shape) == 1 if hasattr(a, 'shape') else True
python
def is1d(a:Collection)->bool: "Return `True` if `a` is one-dimensional" return len(a.shape) == 1 if hasattr(a, 'shape') else True
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Return `True` if `a` is one-dimensional
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L70-L72
train
fastai/fastai
fastai/core.py
uniqueify
def uniqueify(x:Series, sort:bool=False)->List: "Return sorted unique values of `x`." res = list(OrderedDict.fromkeys(x).keys()) if sort: res.sort() return res
python
def uniqueify(x:Series, sort:bool=False)->List: "Return sorted unique values of `x`." res = list(OrderedDict.fromkeys(x).keys()) if sort: res.sort() return res
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Return sorted unique values of `x`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L74-L78
train
fastai/fastai
fastai/core.py
find_classes
def find_classes(folder:Path)->FilePathList: "List of label subdirectories in imagenet-style `folder`." classes = [d for d in folder.iterdir() if d.is_dir() and not d.name.startswith('.')] assert(len(classes)>0) return sorted(classes, key=lambda d: d.name)
python
def find_classes(folder:Path)->FilePathList: "List of label subdirectories in imagenet-style `folder`." classes = [d for d in folder.iterdir() if d.is_dir() and not d.name.startswith('.')] assert(len(classes)>0) return sorted(classes, key=lambda d: d.name)
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List of label subdirectories in imagenet-style `folder`.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L84-L89
train
fastai/fastai
fastai/core.py
arrays_split
def arrays_split(mask:NPArrayMask, *arrs:NPArrayableList)->SplitArrayList: "Given `arrs` is [a,b,...] and `mask`index - return[(a[mask],a[~mask]),(b[mask],b[~mask]),...]." assert all([len(arr)==len(arrs[0]) for arr in arrs]), 'All arrays should have same length' mask = array(mask) return list(zip(*[(a[mask],a[~mask]) for a in map(np.array, arrs)]))
python
def arrays_split(mask:NPArrayMask, *arrs:NPArrayableList)->SplitArrayList: "Given `arrs` is [a,b,...] and `mask`index - return[(a[mask],a[~mask]),(b[mask],b[~mask]),...]." assert all([len(arr)==len(arrs[0]) for arr in arrs]), 'All arrays should have same length' mask = array(mask) return list(zip(*[(a[mask],a[~mask]) for a in map(np.array, arrs)]))
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Given `arrs` is [a,b,...] and `mask`index - return[(a[mask],a[~mask]),(b[mask],b[~mask]),...].
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L91-L95
train
fastai/fastai
fastai/core.py
random_split
def random_split(valid_pct:float, *arrs:NPArrayableList)->SplitArrayList: "Randomly split `arrs` with `valid_pct` ratio. good for creating validation set." assert (valid_pct>=0 and valid_pct<=1), 'Validation set percentage should be between 0 and 1' is_train = np.random.uniform(size=(len(arrs[0]),)) > valid_pct return arrays_split(is_train, *arrs)
python
def random_split(valid_pct:float, *arrs:NPArrayableList)->SplitArrayList: "Randomly split `arrs` with `valid_pct` ratio. good for creating validation set." assert (valid_pct>=0 and valid_pct<=1), 'Validation set percentage should be between 0 and 1' is_train = np.random.uniform(size=(len(arrs[0]),)) > valid_pct return arrays_split(is_train, *arrs)
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Randomly split `arrs` with `valid_pct` ratio. good for creating validation set.
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9fb84a5cdefe5a766cdb792b8f5d8971737b7e67
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/core.py#L97-L101
train