CeLLaTE Datasets
Collection
Current data used for model train/test cycles
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7 items
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Updated
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CellTissue Data train/test
*** Data curation still in progress ***
Papers manually annotated and reviewed, for the following entity types, where applicable:
- Cell type
- Cell line
- Tissue
- Cell context
- Cell component
Dataset Sources [optional]
The following papers were annotated for use as training / testing text data:
PMCID | Journal | Year
PMC12115102 | Plants | 2025
PMC12101583 | Cancer Biology & Therapy | 2025
PMC12081701 | Nature Communications | 2025
PMC11075828 | PLoS Pathogens | 2024
PMC10442740 | Biomedical Reports | 2023
PMC12141184 | Saudi Pharmaceutical Journal | 2025
PMC12118871 | PLoS One | 2025
PMC12105127 | BMC Complementary Medicine and Therapies | 2025
PMC12072392 | International Journal of Molecular Sciences | 2025
PMC11699618 | Iscience | 2024
PMC11641291 | International Journal of Molecular Sciences | 2024
PMC11419360 | PLoS Pathogens | 2024
Uses
The aim for this data is for it to be used for the testing and correction of NER models generated in the OTAR3088 project.
Dataset Structure
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Curation Rationale
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Source Data
Data Collection and Processing
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Who are the source data producers?
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Annotations [optional]
Annotation process
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Who are the annotators?
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Personal and Sensitive Information
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Bias, Risks, and Limitations
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Recommendations
Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations.
Citation [optional]
BibTeX:
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APA:
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